Query 009380
Match_columns 536
No_of_seqs 874 out of 3239
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 12:25:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3E-50 6.5E-55 367.4 29.4 329 177-534 109-479 (480)
2 KOG4328 WD40 protein [Function 100.0 4.5E-50 9.8E-55 374.5 30.9 311 224-535 176-494 (498)
3 KOG0271 Notchless-like WD40 re 100.0 8.6E-44 1.9E-48 325.2 26.1 287 228-535 109-438 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-43 2.5E-48 328.6 23.3 282 233-534 174-458 (459)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.8E-43 3.9E-48 327.2 20.5 293 170-489 162-458 (459)
6 KOG0286 G-protein beta subunit 100.0 3.8E-40 8.3E-45 291.7 30.4 292 224-534 45-343 (343)
7 KOG0286 G-protein beta subunit 100.0 3.4E-39 7.3E-44 285.8 28.1 292 173-489 45-343 (343)
8 KOG0279 G protein beta subunit 100.0 2.1E-38 4.5E-43 279.2 29.2 297 172-491 4-313 (315)
9 KOG0265 U5 snRNP-specific prot 100.0 1.1E-38 2.4E-43 283.6 27.6 296 226-536 39-338 (338)
10 KOG0279 G protein beta subunit 100.0 5.4E-38 1.2E-42 276.6 31.4 292 228-535 9-312 (315)
11 KOG0282 mRNA splicing factor [ 100.0 8.2E-40 1.8E-44 308.0 20.0 293 228-534 208-503 (503)
12 KOG0273 Beta-transducin family 100.0 2.1E-37 4.6E-42 290.6 32.4 321 180-535 175-522 (524)
13 KOG0315 G-protein beta subunit 100.0 2.9E-37 6.3E-42 267.5 29.1 288 210-510 15-307 (311)
14 KOG0284 Polyadenylation factor 100.0 1E-37 2.2E-42 287.8 18.3 281 234-535 96-379 (464)
15 KOG0285 Pleiotropic regulator 100.0 2.6E-36 5.7E-41 274.0 25.0 294 220-535 137-438 (460)
16 KOG0319 WD40-repeat-containing 100.0 8.5E-36 1.8E-40 293.9 28.8 336 178-536 99-577 (775)
17 KOG0284 Polyadenylation factor 100.0 5E-37 1.1E-41 283.3 17.0 279 184-490 97-379 (464)
18 KOG0291 WD40-repeat-containing 100.0 1.4E-34 3E-39 285.5 35.1 298 175-496 299-617 (893)
19 KOG0319 WD40-repeat-containing 100.0 3.4E-35 7.5E-40 289.6 29.0 337 174-534 138-617 (775)
20 KOG0315 G-protein beta subunit 100.0 1.2E-34 2.6E-39 251.3 27.8 273 249-536 11-288 (311)
21 KOG0318 WD40 repeat stress pro 100.0 5.5E-34 1.2E-38 271.0 34.7 339 173-536 180-602 (603)
22 KOG0266 WD40 repeat-containing 100.0 2.5E-34 5.5E-39 293.9 32.9 293 231-536 156-454 (456)
23 KOG0293 WD40 repeat-containing 100.0 4E-35 8.7E-40 270.8 23.6 295 224-535 214-512 (519)
24 KOG0295 WD40 repeat-containing 100.0 7.1E-35 1.5E-39 265.5 24.3 289 226-535 100-405 (406)
25 KOG0645 WD40 repeat protein [G 100.0 9.4E-34 2E-38 248.8 30.2 291 227-536 7-311 (312)
26 KOG0263 Transcription initiati 100.0 4.9E-35 1.1E-39 291.5 25.0 249 176-447 371-652 (707)
27 KOG0273 Beta-transducin family 100.0 3.6E-34 7.8E-39 268.9 28.4 280 183-491 235-523 (524)
28 KOG0296 Angio-associated migra 100.0 8.6E-34 1.9E-38 258.7 29.7 331 177-536 58-398 (399)
29 KOG0291 WD40-repeat-containing 100.0 3.9E-33 8.4E-38 275.4 36.3 340 170-535 132-507 (893)
30 cd00200 WD40 WD40 domain, foun 100.0 5.3E-33 1.2E-37 267.5 36.4 284 229-534 4-289 (289)
31 KOG0318 WD40 repeat stress pro 100.0 1.1E-32 2.5E-37 262.0 36.5 333 179-536 143-560 (603)
32 KOG0265 U5 snRNP-specific prot 100.0 5.2E-34 1.1E-38 253.9 25.3 289 178-489 42-336 (338)
33 KOG0295 WD40 repeat-containing 100.0 5.9E-34 1.3E-38 259.6 23.0 294 171-490 96-405 (406)
34 KOG0316 Conserved WD40 repeat- 100.0 3.3E-33 7.2E-38 240.4 25.9 284 227-533 10-296 (307)
35 KOG0285 Pleiotropic regulator 100.0 1.2E-33 2.7E-38 256.6 23.8 294 174-492 142-440 (460)
36 KOG0263 Transcription initiati 100.0 6E-34 1.3E-38 283.8 23.2 246 234-493 378-651 (707)
37 PLN00181 protein SPA1-RELATED; 100.0 8.6E-32 1.9E-36 295.4 40.2 291 231-535 480-792 (793)
38 PLN00181 protein SPA1-RELATED; 100.0 9.6E-32 2.1E-36 295.0 38.7 294 180-490 480-792 (793)
39 KOG0276 Vesicle coat complex C 100.0 1.9E-32 4.2E-37 265.1 28.5 284 176-485 6-293 (794)
40 KOG0277 Peroxisomal targeting 100.0 1.8E-32 3.9E-37 238.5 24.2 284 237-534 11-307 (311)
41 cd00200 WD40 WD40 domain, foun 100.0 1.6E-31 3.5E-36 257.2 33.7 285 177-489 3-289 (289)
42 KOG0645 WD40 repeat protein [G 100.0 8E-32 1.7E-36 236.7 27.5 289 174-491 5-311 (312)
43 KOG1407 WD40 repeat protein [F 100.0 6.4E-32 1.4E-36 236.0 26.3 287 229-535 15-310 (313)
44 KOG0266 WD40 repeat-containing 100.0 1E-31 2.2E-36 274.7 30.8 290 176-491 151-454 (456)
45 KOG0643 Translation initiation 100.0 1.7E-31 3.8E-36 234.0 27.3 286 229-535 5-316 (327)
46 KOG0281 Beta-TrCP (transducin 100.0 3.2E-33 7E-38 252.9 16.6 269 233-536 196-477 (499)
47 KOG0313 Microtubule binding pr 100.0 1.1E-31 2.4E-36 246.0 26.2 282 230-534 101-416 (423)
48 KOG0316 Conserved WD40 repeat- 100.0 6E-32 1.3E-36 232.7 22.9 248 272-535 7-256 (307)
49 KOG0313 Microtubule binding pr 100.0 6.6E-32 1.4E-36 247.5 24.5 287 181-491 103-418 (423)
50 KOG0276 Vesicle coat complex C 100.0 1.2E-31 2.5E-36 259.7 27.5 283 230-532 9-295 (794)
51 KOG0292 Vesicle coat complex C 100.0 3.1E-31 6.8E-36 265.7 29.0 283 181-490 7-320 (1202)
52 KOG0275 Conserved WD40 repeat- 100.0 3.1E-32 6.7E-37 244.5 16.9 288 233-534 212-507 (508)
53 KOG0278 Serine/threonine kinas 100.0 5.9E-32 1.3E-36 234.7 17.5 286 228-535 8-296 (334)
54 KOG0292 Vesicle coat complex C 100.0 4.4E-31 9.6E-36 264.6 26.1 284 234-536 9-321 (1202)
55 KOG0640 mRNA cleavage stimulat 100.0 3.5E-31 7.6E-36 236.5 21.5 295 228-534 106-424 (430)
56 KOG1446 Histone H3 (Lys4) meth 100.0 2.4E-29 5.3E-34 226.4 33.5 293 225-534 5-301 (311)
57 KOG0283 WD40 repeat-containing 100.0 3E-31 6.5E-36 266.8 23.1 253 231-493 264-578 (712)
58 KOG0772 Uncharacterized conser 100.0 1.2E-30 2.7E-35 247.5 24.8 297 227-533 160-484 (641)
59 KOG0306 WD40-repeat-containing 100.0 4.1E-30 8.9E-35 254.0 29.4 331 175-536 99-580 (888)
60 KOG0277 Peroxisomal targeting 100.0 1.8E-30 3.9E-35 226.1 22.1 266 212-490 35-308 (311)
61 KOG0281 Beta-TrCP (transducin 100.0 2E-31 4.3E-36 241.4 16.7 275 182-495 196-481 (499)
62 KOG0296 Angio-associated migra 100.0 1E-29 2.2E-34 232.2 26.4 289 227-535 57-355 (399)
63 KOG0268 Sof1-like rRNA process 100.0 6.3E-31 1.4E-35 239.6 17.4 282 230-535 62-344 (433)
64 KOG0268 Sof1-like rRNA process 100.0 7.3E-31 1.6E-35 239.2 17.1 288 179-497 62-351 (433)
65 KOG0288 WD40 repeat protein Ti 100.0 1.2E-30 2.7E-35 241.5 16.4 284 176-488 168-458 (459)
66 KOG0288 WD40 repeat protein Ti 100.0 1.4E-30 3E-35 241.2 15.8 290 227-534 168-459 (459)
67 KOG0282 mRNA splicing factor [ 100.0 1.9E-30 4.2E-35 244.9 16.7 253 272-535 204-461 (503)
68 KOG0306 WD40-repeat-containing 100.0 3.5E-29 7.7E-34 247.4 26.3 287 177-493 367-666 (888)
69 KOG0283 WD40 repeat-containing 100.0 1.5E-29 3.3E-34 254.6 23.7 248 277-536 261-576 (712)
70 PTZ00421 coronin; Provisional 100.0 3.4E-28 7.4E-33 247.8 32.5 229 276-515 69-313 (493)
71 KOG0310 Conserved WD40 repeat- 100.0 5.7E-29 1.2E-33 235.4 24.3 283 182-492 25-310 (487)
72 KOG0772 Uncharacterized conser 100.0 3.1E-29 6.8E-34 238.0 22.4 294 174-490 158-486 (641)
73 PTZ00421 coronin; Provisional 100.0 7.1E-28 1.5E-32 245.5 33.4 265 182-452 19-298 (493)
74 KOG0293 WD40 repeat-containing 100.0 4.8E-29 1E-33 230.7 22.2 290 174-492 215-514 (519)
75 PTZ00420 coronin; Provisional 100.0 2.3E-27 5E-32 242.7 34.5 249 254-517 50-318 (568)
76 KOG0274 Cdc4 and related F-box 100.0 3.9E-28 8.4E-33 247.6 28.5 273 233-536 207-482 (537)
77 KOG0275 Conserved WD40 repeat- 100.0 2.3E-29 5E-34 226.0 16.7 280 181-489 211-507 (508)
78 KOG0310 Conserved WD40 repeat- 100.0 2.8E-28 6.1E-33 230.7 24.4 279 234-532 26-305 (487)
79 KOG4283 Transcription-coupled 100.0 5.5E-28 1.2E-32 214.8 24.5 300 227-534 36-363 (397)
80 KOG0264 Nucleosome remodeling 100.0 2.5E-28 5.5E-33 229.5 22.6 255 231-492 121-405 (422)
81 KOG0299 U3 snoRNP-associated p 100.0 8.9E-28 1.9E-32 225.7 26.1 290 227-533 135-453 (479)
82 KOG0289 mRNA splicing factor [ 100.0 1E-27 2.2E-32 223.5 26.1 282 234-535 219-505 (506)
83 KOG0300 WD40 repeat-containing 100.0 2.4E-28 5.2E-33 219.0 21.0 301 172-493 137-478 (481)
84 KOG1407 WD40 repeat protein [F 100.0 1.9E-27 4E-32 208.2 25.5 275 179-482 16-293 (313)
85 KOG0305 Anaphase promoting com 100.0 1.5E-27 3.2E-32 234.5 27.6 271 239-535 182-460 (484)
86 KOG0289 mRNA splicing factor [ 100.0 2.1E-27 4.6E-32 221.4 25.5 268 206-490 232-505 (506)
87 KOG0274 Cdc4 and related F-box 100.0 2.5E-27 5.4E-32 241.8 28.2 266 210-500 223-491 (537)
88 KOG0294 WD40 repeat-containing 100.0 4.6E-27 1E-31 211.0 26.0 269 250-536 3-281 (362)
89 KOG0300 WD40 repeat-containing 100.0 1.3E-27 2.7E-32 214.4 21.8 285 228-536 142-476 (481)
90 KOG0973 Histone transcription 100.0 2.6E-27 5.7E-32 244.3 26.6 290 234-536 13-355 (942)
91 KOG1446 Histone H3 (Lys4) meth 100.0 2.1E-26 4.5E-31 207.6 28.4 251 273-536 5-262 (311)
92 KOG0641 WD40 repeat protein [G 100.0 6.2E-26 1.3E-30 194.5 29.6 289 234-536 32-349 (350)
93 KOG0647 mRNA export protein (c 100.0 2.2E-26 4.8E-31 205.4 27.4 281 231-524 24-311 (347)
94 KOG0305 Anaphase promoting com 100.0 4.9E-27 1.1E-31 230.9 25.7 262 212-493 194-463 (484)
95 KOG1036 Mitotic spindle checkp 100.0 4.1E-26 8.8E-31 204.6 28.9 275 232-525 11-293 (323)
96 KOG0264 Nucleosome remodeling 100.0 2.8E-27 6.2E-32 222.4 22.3 249 279-535 121-403 (422)
97 PTZ00420 coronin; Provisional 100.0 2.2E-26 4.8E-31 235.5 30.6 230 210-446 49-295 (568)
98 KOG2106 Uncharacterized conser 100.0 1.7E-25 3.6E-30 212.3 31.6 341 172-536 93-477 (626)
99 KOG0299 U3 snoRNP-associated p 100.0 2.4E-26 5.3E-31 216.1 24.2 282 176-480 135-444 (479)
100 KOG0301 Phospholipase A2-activ 100.0 1.9E-26 4.1E-31 226.6 24.0 281 174-492 5-289 (745)
101 KOG0308 Conserved WD40 repeat- 99.9 1.9E-26 4E-31 225.0 21.6 307 209-535 41-392 (735)
102 KOG0973 Histone transcription 99.9 5.4E-26 1.2E-30 234.6 26.0 296 178-494 7-358 (942)
103 KOG0278 Serine/threonine kinas 99.9 6.1E-27 1.3E-31 203.6 15.9 247 178-448 54-301 (334)
104 KOG2096 WD40 repeat protein [G 99.9 1.6E-25 3.5E-30 201.2 25.1 293 228-533 80-399 (420)
105 KOG0643 Translation initiation 99.9 1E-25 2.2E-30 197.9 23.3 288 178-492 5-318 (327)
106 KOG1332 Vesicle coat complex C 99.9 2.2E-26 4.7E-31 199.7 18.8 255 228-492 5-287 (299)
107 KOG0639 Transducin-like enhanc 99.9 3.3E-26 7.2E-31 216.7 20.8 282 232-535 417-703 (705)
108 KOG1273 WD40 repeat protein [G 99.9 1E-25 2.2E-30 202.1 22.5 279 237-535 26-321 (405)
109 KOG0269 WD40 repeat-containing 99.9 2.3E-26 5E-31 228.6 20.0 287 234-532 39-336 (839)
110 KOG1408 WD40 repeat protein [F 99.9 1.5E-25 3.3E-30 220.3 25.3 285 238-535 328-712 (1080)
111 KOG0640 mRNA cleavage stimulat 99.9 3.3E-26 7.1E-31 204.8 18.3 255 273-535 103-382 (430)
112 KOG1274 WD40 repeat protein [G 99.9 1.2E-24 2.6E-29 220.4 30.8 284 230-533 9-297 (933)
113 KOG1539 WD repeat protein [Gen 99.9 7.4E-25 1.6E-29 219.5 28.8 327 174-534 193-646 (910)
114 KOG0321 WD40 repeat-containing 99.9 3.3E-25 7.2E-30 215.9 25.1 293 238-535 53-390 (720)
115 KOG1036 Mitotic spindle checkp 99.9 1.1E-24 2.3E-29 195.6 24.9 272 182-481 12-294 (323)
116 KOG1063 RNA polymerase II elon 99.9 5.5E-25 1.2E-29 216.3 25.1 344 172-535 180-647 (764)
117 KOG0641 WD40 repeat protein [G 99.9 5.1E-24 1.1E-28 182.7 27.8 286 181-491 30-349 (350)
118 KOG0301 Phospholipase A2-activ 99.9 8.5E-25 1.8E-29 215.1 26.0 280 227-536 7-288 (745)
119 KOG0647 mRNA export protein (c 99.9 1.9E-24 4.2E-29 193.1 25.5 273 180-479 24-311 (347)
120 KOG4328 WD40 protein [Function 99.9 1.1E-24 2.3E-29 204.8 24.3 415 4-492 63-496 (498)
121 KOG0308 Conserved WD40 repeat- 99.9 1.3E-25 2.9E-30 219.0 18.9 280 239-535 29-326 (735)
122 KOG1332 Vesicle coat complex C 99.9 2.4E-25 5.3E-30 193.2 17.3 254 177-443 5-285 (299)
123 KOG0294 WD40 repeat-containing 99.9 3.8E-24 8.3E-29 192.3 24.8 247 225-493 34-283 (362)
124 KOG1063 RNA polymerase II elon 99.9 4.9E-24 1.1E-28 209.6 26.6 342 171-535 255-698 (764)
125 KOG2055 WD40 repeat protein [G 99.9 4.6E-24 9.9E-29 200.8 24.9 287 231-535 210-511 (514)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.5E-23 9.7E-28 201.2 32.3 270 249-536 2-279 (300)
127 KOG0270 WD40 repeat-containing 99.9 3.6E-24 7.9E-29 200.7 22.3 256 234-496 173-454 (463)
128 KOG0302 Ribosome Assembly prot 99.9 3.1E-24 6.7E-29 197.1 20.7 259 171-441 139-435 (440)
129 KOG2106 Uncharacterized conser 99.9 7E-23 1.5E-27 194.6 29.7 325 184-536 247-626 (626)
130 KOG1274 WD40 repeat protein [G 99.9 2E-23 4.4E-28 211.6 27.0 248 279-536 10-262 (933)
131 KOG0639 Transducin-like enhanc 99.9 2.4E-24 5.2E-29 204.2 19.0 280 181-490 417-703 (705)
132 KOG2055 WD40 repeat protein [G 99.9 9.6E-24 2.1E-28 198.6 22.9 301 171-491 201-512 (514)
133 KOG0307 Vesicle coat complex C 99.9 7.1E-25 1.5E-29 227.4 14.6 299 187-494 10-330 (1049)
134 KOG0269 WD40 repeat-containing 99.9 2E-24 4.4E-29 214.8 17.2 246 236-493 89-342 (839)
135 KOG1539 WD repeat protein [Gen 99.9 2.5E-22 5.4E-27 201.5 31.4 341 174-536 105-523 (910)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.3E-22 7.2E-27 195.1 32.1 275 210-501 6-289 (300)
137 KOG1408 WD40 repeat protein [F 99.9 2.7E-22 5.8E-27 197.6 29.7 242 287-535 329-670 (1080)
138 KOG0270 WD40 repeat-containing 99.9 1.2E-23 2.7E-28 197.2 19.4 230 210-449 197-454 (463)
139 KOG2096 WD40 repeat protein [G 99.9 1.3E-22 2.9E-27 182.5 24.5 293 175-489 78-400 (420)
140 KOG1445 Tumor-specific antigen 99.9 3.7E-23 7.9E-28 201.2 22.4 201 327-535 630-843 (1012)
141 KOG2048 WD40 repeat protein [G 99.9 1.4E-21 3E-26 192.3 33.4 238 182-444 24-275 (691)
142 KOG1188 WD40 repeat protein [G 99.9 5.6E-23 1.2E-27 186.8 21.4 278 249-535 41-345 (376)
143 KOG0646 WD40 repeat protein [G 99.9 3E-23 6.6E-28 195.7 20.0 230 216-454 62-317 (476)
144 KOG0302 Ribosome Assembly prot 99.9 3.3E-23 7.2E-28 190.3 18.7 213 231-445 148-379 (440)
145 KOG1034 Transcriptional repres 99.9 8.8E-23 1.9E-27 184.5 20.3 323 180-535 35-382 (385)
146 KOG0650 WD40 repeat nucleolar 99.9 2.4E-22 5.2E-27 194.6 24.6 288 227-534 393-733 (733)
147 KOG2445 Nuclear pore complex c 99.9 9.5E-22 2.1E-26 176.4 26.6 261 228-493 7-320 (361)
148 KOG0646 WD40 repeat protein [G 99.9 3.5E-22 7.5E-27 188.6 23.0 268 251-535 10-306 (476)
149 KOG0267 Microtubule severing p 99.9 2.8E-24 6.1E-29 212.2 9.0 234 180-436 25-260 (825)
150 KOG0267 Microtubule severing p 99.9 6.1E-24 1.3E-28 209.8 9.8 245 216-483 15-260 (825)
151 KOG2445 Nuclear pore complex c 99.9 8E-22 1.7E-26 176.9 22.4 259 175-444 5-318 (361)
152 KOG0650 WD40 repeat nucleolar 99.9 6.6E-22 1.4E-26 191.6 22.7 296 175-488 392-732 (733)
153 KOG2048 WD40 repeat protein [G 99.9 1.1E-20 2.4E-25 186.0 29.4 283 232-533 23-316 (691)
154 KOG4378 Nuclear protein COP1 [ 99.9 1.3E-21 2.7E-26 185.7 21.7 284 215-515 12-303 (673)
155 KOG0321 WD40 repeat-containing 99.9 2.3E-21 5E-26 189.3 22.4 271 210-493 69-393 (720)
156 KOG0307 Vesicle coat complex C 99.9 1.4E-22 3.1E-27 210.4 14.4 286 237-536 9-327 (1049)
157 KOG1273 WD40 repeat protein [G 99.9 1E-20 2.3E-25 170.2 24.1 283 186-492 26-323 (405)
158 KOG4283 Transcription-coupled 99.9 1.7E-20 3.6E-25 167.4 23.9 293 175-490 35-364 (397)
159 KOG2919 Guanine nucleotide-bin 99.9 1.3E-20 2.9E-25 170.1 23.4 275 237-526 52-360 (406)
160 KOG4227 WD40 repeat protein [G 99.9 1.7E-20 3.6E-25 173.2 23.1 294 230-534 52-385 (609)
161 KOG1007 WD repeat protein TSSC 99.9 1.6E-20 3.5E-25 167.0 21.3 295 213-534 38-359 (370)
162 KOG4378 Nuclear protein COP1 [ 99.9 6.1E-21 1.3E-25 181.1 19.0 231 211-453 53-289 (673)
163 KOG1587 Cytoplasmic dynein int 99.9 8.6E-20 1.9E-24 185.1 26.2 272 212-493 219-518 (555)
164 KOG1009 Chromatin assembly com 99.9 1.6E-19 3.4E-24 167.9 22.4 291 234-533 13-369 (434)
165 KOG1334 WD40 repeat protein [G 99.8 2.3E-20 4.9E-25 177.2 16.5 299 227-534 135-464 (559)
166 KOG2919 Guanine nucleotide-bin 99.8 3.1E-19 6.8E-24 161.3 22.6 274 185-483 51-362 (406)
167 COG2319 FOG: WD40 repeat [Gene 99.8 1.3E-17 2.9E-22 169.5 37.8 330 178-536 60-400 (466)
168 KOG0642 Cell-cycle nuclear pro 99.8 1.9E-20 4.2E-25 180.8 14.7 261 170-449 281-566 (577)
169 KOG0303 Actin-binding protein 99.8 4.1E-19 9E-24 164.5 22.2 213 273-495 72-298 (472)
170 KOG0303 Actin-binding protein 99.8 2.6E-19 5.7E-24 165.7 20.3 214 229-447 76-297 (472)
171 COG2319 FOG: WD40 repeat [Gene 99.8 3.1E-17 6.7E-22 166.8 38.0 303 211-536 130-442 (466)
172 KOG2110 Uncharacterized conser 99.8 2.2E-17 4.9E-22 152.2 30.4 235 236-492 7-249 (391)
173 KOG0290 Conserved WD40 repeat- 99.8 9.9E-19 2.2E-23 155.9 20.3 250 180-440 93-361 (364)
174 KOG0290 Conserved WD40 repeat- 99.8 6.8E-19 1.5E-23 156.9 19.1 245 231-482 93-357 (364)
175 KOG1538 Uncharacterized conser 99.8 7.4E-19 1.6E-23 172.4 21.1 273 236-535 14-292 (1081)
176 KOG0322 G-protein beta subunit 99.8 4.2E-19 9.2E-24 156.2 16.7 290 225-535 5-322 (323)
177 KOG1007 WD repeat protein TSSC 99.8 1.5E-18 3.3E-23 154.6 20.3 258 175-444 55-361 (370)
178 KOG1538 Uncharacterized conser 99.8 8.9E-19 1.9E-23 171.8 20.1 273 185-492 14-294 (1081)
179 KOG1034 Transcriptional repres 99.8 1.1E-18 2.3E-23 158.2 18.8 251 279-536 35-337 (385)
180 KOG1587 Cytoplasmic dynein int 99.8 1.3E-17 2.9E-22 169.2 28.6 266 258-535 222-515 (555)
181 KOG0649 WD40 repeat protein [G 99.8 1.5E-17 3.2E-22 144.8 24.0 276 235-534 11-314 (325)
182 KOG1517 Guanine nucleotide bin 99.8 7.5E-18 1.6E-22 173.3 24.7 293 185-494 1066-1384(1387)
183 KOG0642 Cell-cycle nuclear pro 99.8 1E-18 2.2E-23 169.0 16.1 262 229-500 289-570 (577)
184 PRK11028 6-phosphogluconolacto 99.8 1.3E-16 2.8E-21 157.9 31.2 278 251-536 5-304 (330)
185 KOG1517 Guanine nucleotide bin 99.8 1.2E-17 2.6E-22 171.8 23.7 288 234-535 1064-1380(1387)
186 KOG4497 Uncharacterized conser 99.8 1E-17 2.2E-22 151.9 18.7 311 188-535 13-390 (447)
187 KOG1188 WD40 repeat protein [G 99.8 4.1E-17 8.8E-22 148.9 20.1 276 210-490 45-345 (376)
188 PRK11028 6-phosphogluconolacto 99.8 4.2E-16 9.2E-21 154.2 29.4 271 212-491 9-304 (330)
189 KOG1445 Tumor-specific antigen 99.8 1.3E-17 2.8E-22 162.9 17.9 239 247-494 590-847 (1012)
190 KOG1524 WD40 repeat-containing 99.8 2.2E-17 4.8E-22 158.5 18.8 264 182-488 13-283 (737)
191 KOG0644 Uncharacterized conser 99.8 1.6E-18 3.4E-23 174.1 10.4 289 170-495 177-472 (1113)
192 KOG1240 Protein kinase contain 99.8 2.5E-16 5.4E-21 164.7 26.3 258 229-493 1043-1336(1431)
193 KOG1009 Chromatin assembly com 99.8 1.6E-16 3.5E-21 148.1 21.5 289 184-495 14-376 (434)
194 PRK01742 tolB translocation pr 99.8 1.1E-16 2.3E-21 163.6 22.3 236 257-516 183-426 (429)
195 KOG1963 WD40 repeat protein [G 99.8 1.5E-15 3.3E-20 154.6 30.1 312 216-536 182-538 (792)
196 KOG4227 WD40 repeat protein [G 99.7 2.9E-16 6.2E-21 145.4 20.8 295 174-491 47-387 (609)
197 KOG1523 Actin-related protein 99.7 7.6E-16 1.6E-20 139.5 22.3 211 231-447 7-239 (361)
198 KOG1524 WD40 repeat-containing 99.7 1.6E-16 3.5E-21 152.7 18.2 268 233-532 13-282 (737)
199 KOG0644 Uncharacterized conser 99.7 8.4E-18 1.8E-22 169.0 8.9 242 273-535 181-425 (1113)
200 KOG1310 WD40 repeat protein [G 99.7 1.5E-16 3.2E-21 153.3 15.8 218 224-447 40-306 (758)
201 KOG1963 WD40 repeat protein [G 99.7 6.8E-15 1.5E-19 149.9 28.3 279 240-535 22-374 (792)
202 KOG0322 G-protein beta subunit 99.7 3.1E-16 6.7E-21 138.3 15.9 288 176-490 7-322 (323)
203 KOG2139 WD40 repeat protein [G 99.7 1.9E-14 4.2E-19 132.4 27.6 272 210-490 115-430 (445)
204 KOG1334 WD40 repeat protein [G 99.7 1.7E-16 3.8E-21 151.0 14.6 308 169-493 128-468 (559)
205 PRK01742 tolB translocation pr 99.7 3.3E-15 7.2E-20 152.6 22.6 221 214-453 183-412 (429)
206 KOG1272 WD40-repeat-containing 99.7 1.7E-16 3.8E-21 150.1 11.4 268 236-528 131-401 (545)
207 KOG0771 Prolactin regulatory e 99.7 5.3E-15 1.2E-19 139.1 21.1 199 328-535 148-353 (398)
208 KOG0649 WD40 repeat protein [G 99.7 9.1E-15 2E-19 127.6 20.9 231 284-535 12-273 (325)
209 KOG2139 WD40 repeat protein [G 99.7 4.6E-14 1E-18 130.0 25.8 285 234-535 98-430 (445)
210 KOG1310 WD40 repeat protein [G 99.7 1.3E-15 2.8E-20 146.9 16.2 224 275-499 43-311 (758)
211 KOG1240 Protein kinase contain 99.7 1.1E-14 2.3E-19 152.7 23.2 263 263-535 1034-1333(1431)
212 KOG1272 WD40-repeat-containing 99.7 2.7E-16 5.8E-21 148.9 10.0 273 185-488 131-406 (545)
213 KOG2110 Uncharacterized conser 99.7 1.1E-13 2.4E-18 128.1 26.3 237 283-536 6-248 (391)
214 KOG2111 Uncharacterized conser 99.7 3.2E-13 7E-18 122.7 28.6 237 237-493 8-258 (346)
215 PRK03629 tolB translocation pr 99.7 7.1E-14 1.5E-18 142.5 27.7 236 258-515 179-427 (429)
216 KOG2321 WD40 repeat protein [G 99.7 3.5E-14 7.6E-19 138.0 23.2 280 232-533 49-340 (703)
217 KOG1523 Actin-related protein 99.6 4.5E-14 9.8E-19 128.2 21.5 213 277-494 5-239 (361)
218 KOG2394 WD40 protein DMR-N9 [G 99.6 2.7E-14 5.8E-19 137.8 20.2 236 247-514 134-383 (636)
219 PRK04922 tolB translocation pr 99.6 7.2E-14 1.6E-18 143.1 24.5 223 258-500 184-419 (433)
220 KOG1409 Uncharacterized conser 99.6 3.4E-14 7.4E-19 130.1 19.4 255 171-445 12-271 (404)
221 KOG2315 Predicted translation 99.6 2.1E-13 4.6E-18 132.7 25.4 310 186-535 37-389 (566)
222 KOG0771 Prolactin regulatory e 99.6 9.2E-15 2E-19 137.5 14.9 195 238-444 148-354 (398)
223 PRK02889 tolB translocation pr 99.6 1.3E-13 2.9E-18 140.7 24.7 225 258-500 176-411 (427)
224 PRK05137 tolB translocation pr 99.6 3.4E-13 7.3E-18 138.3 27.5 222 258-500 182-420 (435)
225 KOG3881 Uncharacterized conser 99.6 8.5E-14 1.8E-18 129.6 20.0 257 234-500 55-329 (412)
226 PRK03629 tolB translocation pr 99.6 3.9E-13 8.5E-18 137.1 26.8 220 215-452 179-413 (429)
227 PRK04922 tolB translocation pr 99.6 3E-13 6.4E-18 138.6 24.3 215 215-445 184-412 (433)
228 KOG1354 Serine/threonine prote 99.6 3.1E-13 6.8E-18 123.8 21.3 255 234-493 25-361 (433)
229 PRK05137 tolB translocation pr 99.6 4.7E-13 1E-17 137.3 25.4 216 215-447 182-415 (435)
230 PF02239 Cytochrom_D1: Cytochr 99.6 1.9E-12 4.1E-17 128.2 27.1 275 249-536 6-302 (369)
231 KOG3881 Uncharacterized conser 99.6 3.9E-13 8.5E-18 125.3 20.1 213 232-453 103-329 (412)
232 KOG2321 WD40 repeat protein [G 99.5 1.2E-12 2.7E-17 127.4 22.4 282 182-493 50-345 (703)
233 KOG4497 Uncharacterized conser 99.5 3.9E-14 8.5E-19 128.8 10.3 221 287-534 13-238 (447)
234 KOG0280 Uncharacterized conser 99.5 2.6E-12 5.5E-17 115.6 21.6 226 213-447 44-287 (339)
235 PRK02889 tolB translocation pr 99.5 3.7E-12 8E-17 130.1 25.1 220 215-452 176-410 (427)
236 PF02239 Cytochrom_D1: Cytochr 99.5 2.1E-11 4.5E-16 120.9 28.4 304 210-535 11-346 (369)
237 KOG2394 WD40 protein DMR-N9 [G 99.5 4.5E-13 9.7E-18 129.5 14.8 170 247-424 184-384 (636)
238 TIGR02800 propeller_TolB tol-p 99.5 1.1E-11 2.4E-16 127.0 26.4 215 258-491 170-397 (417)
239 PRK04792 tolB translocation pr 99.5 1.8E-11 4E-16 125.4 26.5 235 259-515 199-446 (448)
240 PF08662 eIF2A: Eukaryotic tra 99.5 2.1E-12 4.5E-17 116.4 16.9 157 328-499 9-186 (194)
241 COG5354 Uncharacterized protei 99.5 4.5E-11 9.9E-16 115.3 26.3 313 184-535 33-394 (561)
242 KOG2111 Uncharacterized conser 99.5 3.9E-11 8.5E-16 109.3 24.4 175 214-400 74-258 (346)
243 PRK00178 tolB translocation pr 99.5 4.1E-11 8.8E-16 123.1 27.6 222 259-500 180-414 (430)
244 PF10282 Lactonase: Lactonase, 99.5 5.8E-11 1.3E-15 117.8 27.4 279 251-536 2-322 (345)
245 PF10282 Lactonase: Lactonase, 99.5 1.4E-10 2.9E-15 115.2 29.8 276 213-494 11-327 (345)
246 KOG1354 Serine/threonine prote 99.5 3.7E-12 8.1E-17 116.8 16.8 247 183-447 25-362 (433)
247 TIGR02800 propeller_TolB tol-p 99.4 2.7E-11 6E-16 124.1 25.1 212 215-443 170-396 (417)
248 KOG0280 Uncharacterized conser 99.4 5.4E-12 1.2E-16 113.6 16.5 229 211-444 91-333 (339)
249 PF08662 eIF2A: Eukaryotic tra 99.4 1.2E-11 2.6E-16 111.5 17.2 162 188-362 10-185 (194)
250 PRK00178 tolB translocation pr 99.4 8.6E-11 1.9E-15 120.7 25.3 212 216-444 180-406 (430)
251 PRK04792 tolB translocation pr 99.4 1.2E-10 2.6E-15 119.4 24.9 221 216-452 199-432 (448)
252 KOG2314 Translation initiation 99.4 3.5E-10 7.5E-15 110.2 25.0 310 187-529 214-560 (698)
253 KOG2315 Predicted translation 99.4 3E-10 6.6E-15 111.0 23.8 236 187-444 129-390 (566)
254 PRK01029 tolB translocation pr 99.4 5.7E-10 1.2E-14 113.5 27.1 225 258-496 165-408 (428)
255 KOG4190 Uncharacterized conser 99.3 4.9E-12 1.1E-16 122.6 10.7 284 230-532 731-1032(1034)
256 KOG4547 WD40 repeat-containing 99.3 1.6E-10 3.4E-15 113.7 20.9 187 247-445 4-221 (541)
257 KOG0974 WD-repeat protein WDR6 99.3 7E-11 1.5E-15 123.1 18.8 197 232-445 85-289 (967)
258 KOG0309 Conserved WD40 repeat- 99.3 1.8E-11 3.8E-16 122.6 12.7 293 184-492 25-340 (1081)
259 KOG1064 RAVE (regulator of V-A 99.3 1.9E-11 4.2E-16 133.0 13.7 223 281-529 2207-2439(2439)
260 PRK01029 tolB translocation pr 99.3 8.8E-10 1.9E-14 112.1 25.3 224 215-451 165-410 (428)
261 COG2706 3-carboxymuconate cycl 99.3 9.7E-09 2.1E-13 96.0 29.4 276 210-491 11-321 (346)
262 COG2706 3-carboxymuconate cycl 99.3 9E-09 1.9E-13 96.2 29.0 272 257-536 15-321 (346)
263 TIGR03300 assembly_YfgL outer 99.3 4.9E-09 1.1E-13 105.8 29.4 256 247-533 104-376 (377)
264 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.5E-08 3.2E-13 98.5 30.4 255 258-536 27-330 (352)
265 PLN02919 haloacid dehalogenase 99.3 5E-09 1.1E-13 117.3 30.7 250 238-495 571-892 (1057)
266 TIGR03300 assembly_YfgL outer 99.3 3.8E-09 8.2E-14 106.6 27.0 265 247-536 64-338 (377)
267 KOG0974 WD-repeat protein WDR6 99.3 4.5E-10 9.8E-15 117.2 19.8 196 284-492 89-289 (967)
268 KOG0309 Conserved WD40 repeat- 99.2 1.3E-10 2.8E-15 116.6 15.0 284 233-536 23-339 (1081)
269 KOG1064 RAVE (regulator of V-A 99.2 3.6E-11 7.9E-16 130.9 11.9 197 234-455 2208-2409(2439)
270 KOG4532 WD40-like repeat conta 99.2 3.1E-09 6.8E-14 94.8 21.5 259 215-482 52-323 (344)
271 TIGR02658 TTQ_MADH_Hv methylam 99.2 3.1E-08 6.8E-13 96.2 30.2 267 214-500 26-339 (352)
272 KOG2041 WD40 repeat protein [G 99.2 1.5E-09 3.3E-14 108.6 21.2 282 234-532 14-333 (1189)
273 PF15492 Nbas_N: Neuroblastoma 99.2 3.8E-09 8.2E-14 95.8 21.6 242 189-457 3-272 (282)
274 COG5170 CDC55 Serine/threonine 99.2 7.6E-10 1.6E-14 100.5 16.6 252 234-490 26-366 (460)
275 KOG4714 Nucleoporin [Nuclear s 99.2 5.8E-10 1.3E-14 98.9 15.0 200 237-445 39-255 (319)
276 PLN02919 haloacid dehalogenase 99.2 1.6E-08 3.5E-13 113.3 30.3 247 286-536 571-888 (1057)
277 KOG4547 WD40 repeat-containing 99.2 5.9E-09 1.3E-13 102.9 23.2 181 212-400 12-222 (541)
278 PF04762 IKI3: IKI3 family; I 99.1 6.6E-08 1.4E-12 106.4 31.2 285 235-534 22-377 (928)
279 KOG4714 Nucleoporin [Nuclear s 99.1 1.1E-09 2.4E-14 97.2 13.6 205 188-399 41-255 (319)
280 PRK04043 tolB translocation pr 99.1 1.5E-07 3.3E-12 95.3 28.4 195 284-493 189-402 (419)
281 KOG0882 Cyclophilin-related pe 99.1 2.3E-09 5E-14 102.1 14.0 262 231-499 6-313 (558)
282 KOG2314 Translation initiation 99.1 7.2E-08 1.5E-12 94.4 24.4 292 217-536 192-525 (698)
283 COG5354 Uncharacterized protei 99.1 1.8E-07 3.9E-12 90.9 26.8 295 179-495 67-399 (561)
284 COG4946 Uncharacterized protei 99.1 3.3E-07 7.1E-12 88.3 28.1 176 242-433 327-507 (668)
285 KOG1409 Uncharacterized conser 99.1 8.5E-09 1.8E-13 95.2 16.2 249 272-536 14-270 (404)
286 KOG4190 Uncharacterized conser 99.1 3.1E-10 6.7E-15 110.3 7.1 245 272-533 725-985 (1034)
287 KOG3914 WD repeat protein WDR4 99.0 5E-09 1.1E-13 98.8 12.7 159 236-401 64-226 (390)
288 PF04762 IKI3: IKI3 family; I 99.0 5.2E-07 1.1E-11 99.5 30.5 331 182-534 208-562 (928)
289 KOG1645 RING-finger-containing 99.0 5.4E-08 1.2E-12 91.8 18.6 257 272-536 183-461 (463)
290 PRK04043 tolB translocation pr 98.9 6.1E-07 1.3E-11 90.9 26.2 194 235-444 188-400 (419)
291 KOG1912 WD40 repeat protein [G 98.9 7.2E-08 1.6E-12 97.9 18.9 248 234-492 15-305 (1062)
292 KOG2041 WD40 repeat protein [G 98.9 1.7E-07 3.6E-12 94.4 19.9 229 185-435 16-279 (1189)
293 PRK11138 outer membrane biogen 98.9 6.7E-07 1.4E-11 90.7 25.1 264 247-535 68-352 (394)
294 COG5170 CDC55 Serine/threonine 98.9 4E-08 8.7E-13 89.5 14.1 245 182-444 25-367 (460)
295 KOG2695 WD40 repeat protein [G 98.9 4.4E-09 9.5E-14 97.1 8.0 164 289-456 218-388 (425)
296 KOG2695 WD40 repeat protein [G 98.9 5E-09 1.1E-13 96.7 8.1 155 341-502 228-387 (425)
297 KOG1275 PAB-dependent poly(A) 98.9 4.9E-08 1.1E-12 100.8 15.9 183 295-490 147-341 (1118)
298 PRK11138 outer membrane biogen 98.9 1.8E-06 3.9E-11 87.6 27.3 262 247-535 119-393 (394)
299 COG4946 Uncharacterized protei 98.9 7.4E-07 1.6E-11 85.9 21.9 248 213-479 244-506 (668)
300 PF13360 PQQ_2: PQQ-like domai 98.9 1.4E-06 3E-11 81.8 24.0 220 257-498 2-237 (238)
301 PF08450 SGL: SMP-30/Gluconola 98.9 9.1E-06 2E-10 76.7 29.6 223 239-480 4-244 (246)
302 PF08450 SGL: SMP-30/Gluconola 98.8 7.3E-06 1.6E-10 77.4 28.6 211 287-513 4-232 (246)
303 KOG1832 HIV-1 Vpr-binding prot 98.8 2.1E-09 4.6E-14 110.0 4.5 223 224-479 1091-1319(1516)
304 KOG1912 WD40 repeat protein [G 98.8 2.6E-07 5.7E-12 93.9 18.4 246 281-534 14-302 (1062)
305 KOG4532 WD40-like repeat conta 98.8 8E-07 1.7E-11 79.7 19.3 224 257-499 51-290 (344)
306 KOG3914 WD repeat protein WDR4 98.8 1.1E-07 2.4E-12 89.9 13.9 158 287-453 67-232 (390)
307 PF13360 PQQ_2: PQQ-like domai 98.7 2.6E-06 5.6E-11 80.0 21.8 217 304-536 2-230 (238)
308 KOG2066 Vacuolar assembly/sort 98.7 4.9E-07 1.1E-11 92.6 17.5 187 234-444 39-233 (846)
309 PF15492 Nbas_N: Neuroblastoma 98.7 2.4E-05 5.2E-10 71.5 26.5 236 240-501 3-269 (282)
310 KOG1920 IkappaB kinase complex 98.6 1.8E-05 3.9E-10 85.0 26.4 237 282-534 68-363 (1265)
311 KOG1832 HIV-1 Vpr-binding prot 98.6 5E-08 1.1E-12 100.2 5.8 218 272-515 1091-1311(1516)
312 KOG1645 RING-finger-containing 98.6 3.1E-06 6.6E-11 80.2 17.1 253 221-491 180-461 (463)
313 KOG2066 Vacuolar assembly/sort 98.6 2.3E-06 5E-11 87.8 17.4 189 283-491 40-233 (846)
314 KOG0882 Cyclophilin-related pe 98.6 4.3E-07 9.4E-12 86.9 11.2 214 281-500 8-240 (558)
315 PF07433 DUF1513: Protein of u 98.6 0.00011 2.3E-09 69.3 26.9 209 234-454 4-257 (305)
316 PF07433 DUF1513: Protein of u 98.6 4.2E-05 9.1E-10 72.0 24.1 229 286-526 8-276 (305)
317 KOG1008 Uncharacterized conser 98.6 2.2E-08 4.8E-13 99.7 2.0 199 236-444 58-275 (783)
318 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00028 6.1E-09 63.6 26.3 118 231-357 49-167 (354)
319 KOG1275 PAB-dependent poly(A) 98.5 1.7E-06 3.8E-11 89.7 14.0 150 236-397 179-341 (1118)
320 PF11768 DUF3312: Protein of u 98.5 7.6E-05 1.7E-09 74.9 25.0 115 323-444 204-329 (545)
321 PRK02888 nitrous-oxide reducta 98.5 3.7E-05 8.1E-10 79.0 23.2 189 290-480 200-450 (635)
322 KOG2114 Vacuolar assembly/sort 98.5 3.9E-05 8.4E-10 79.7 23.2 200 241-453 30-252 (933)
323 KOG1920 IkappaB kinase complex 98.5 5.5E-05 1.2E-09 81.5 24.9 202 234-447 68-325 (1265)
324 PF00400 WD40: WD domain, G-be 98.5 4.7E-07 1E-11 58.1 5.5 38 358-396 2-39 (39)
325 PF00400 WD40: WD domain, G-be 98.5 5.3E-07 1.1E-11 57.9 5.7 38 273-311 2-39 (39)
326 PF14583 Pectate_lyase22: Olig 98.4 0.0002 4.4E-09 69.6 23.9 287 183-490 35-380 (386)
327 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00085 1.9E-08 60.5 24.7 143 247-398 22-165 (354)
328 KOG2114 Vacuolar assembly/sort 98.3 0.00011 2.4E-09 76.5 21.5 198 210-417 40-259 (933)
329 cd00216 PQQ_DH Dehydrogenases 98.3 0.00031 6.8E-09 73.1 25.5 263 249-536 62-424 (488)
330 KOG3621 WD40 repeat-containing 98.3 0.00016 3.4E-09 73.8 21.1 156 233-399 32-198 (726)
331 PF08596 Lgl_C: Lethal giant l 98.3 0.00028 6E-09 70.6 22.8 236 236-482 3-327 (395)
332 PF11768 DUF3312: Protein of u 98.3 3.4E-05 7.4E-10 77.4 16.1 111 285-399 208-330 (545)
333 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00027 5.8E-09 70.5 22.8 272 192-480 1-346 (353)
334 KOG1008 Uncharacterized conser 98.2 5.4E-07 1.2E-11 90.1 2.3 202 282-491 56-275 (783)
335 cd00216 PQQ_DH Dehydrogenases 98.2 0.00083 1.8E-08 70.0 26.0 234 249-501 111-434 (488)
336 KOG3617 WD40 and TPR repeat-co 98.2 1.3E-05 2.7E-10 82.8 11.2 188 286-492 19-221 (1416)
337 PF14583 Pectate_lyase22: Olig 98.2 0.0015 3.2E-08 63.7 24.5 277 241-535 42-380 (386)
338 COG3391 Uncharacterized conser 98.1 0.0025 5.5E-08 64.1 27.0 210 285-500 76-292 (381)
339 KOG3617 WD40 and TPR repeat-co 98.1 0.00013 2.7E-09 75.7 17.0 110 190-313 22-131 (1416)
340 COG0823 TolB Periplasmic compo 98.1 0.00022 4.7E-09 72.1 18.3 195 275-481 185-389 (425)
341 KOG3621 WD40 repeat-containing 98.1 0.00034 7.4E-09 71.5 19.3 155 184-356 34-198 (726)
342 PF14727 PHTB1_N: PTHB1 N-term 98.1 0.016 3.6E-07 58.0 30.9 278 247-532 36-356 (418)
343 COG3391 Uncharacterized conser 98.0 0.0083 1.8E-07 60.4 27.2 241 284-534 32-281 (381)
344 PF00780 CNH: CNH domain; Int 98.0 0.013 2.7E-07 56.3 27.4 228 247-503 6-267 (275)
345 PF06977 SdiA-regulated: SdiA- 97.9 0.0047 1E-07 57.5 22.5 194 232-441 19-247 (248)
346 PF08596 Lgl_C: Lethal giant l 97.9 0.0019 4E-08 64.7 20.9 209 284-501 3-300 (395)
347 PF04841 Vps16_N: Vps16, N-ter 97.9 0.013 2.7E-07 59.5 26.5 174 259-452 62-254 (410)
348 PRK02888 nitrous-oxide reducta 97.9 0.00049 1.1E-08 71.0 16.1 188 188-399 197-405 (635)
349 PF03178 CPSF_A: CPSF A subuni 97.8 0.0043 9.4E-08 61.0 21.9 215 305-532 2-261 (321)
350 PF08553 VID27: VID27 cytoplas 97.8 0.0036 7.8E-08 67.2 22.3 141 296-443 494-646 (794)
351 PF06433 Me-amine-dh_H: Methyl 97.8 0.012 2.6E-07 56.5 23.4 269 215-501 17-330 (342)
352 COG0823 TolB Periplasmic compo 97.8 0.00066 1.4E-08 68.6 15.8 188 234-434 192-389 (425)
353 PF06977 SdiA-regulated: SdiA- 97.8 0.013 2.9E-07 54.5 23.1 207 277-488 16-247 (248)
354 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.0048 1E-07 61.6 21.9 258 247-526 3-301 (353)
355 PF04053 Coatomer_WDAD: Coatom 97.8 0.0043 9.4E-08 63.0 21.5 223 236-493 34-264 (443)
356 PF08553 VID27: VID27 cytoplas 97.8 0.0013 2.9E-08 70.4 17.9 143 247-398 492-647 (794)
357 PF04053 Coatomer_WDAD: Coatom 97.8 0.019 4.2E-07 58.4 25.2 226 277-536 27-262 (443)
358 PF03178 CPSF_A: CPSF A subuni 97.7 0.014 3.1E-07 57.4 23.6 174 259-444 3-202 (321)
359 PF00780 CNH: CNH domain; Int 97.7 0.022 4.7E-07 54.6 24.1 220 296-536 8-255 (275)
360 PF02897 Peptidase_S9_N: Proly 97.7 0.014 3.1E-07 59.6 23.8 252 226-494 114-407 (414)
361 KOG1897 Damage-specific DNA bi 97.7 0.062 1.3E-06 57.7 27.8 284 234-532 583-894 (1096)
362 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0032 6.8E-08 49.8 13.7 102 285-393 2-109 (111)
363 KOG4640 Anaphase-promoting com 97.6 0.00027 5.9E-09 71.3 9.6 96 231-334 17-115 (665)
364 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.094 2E-06 55.1 28.8 189 249-449 70-338 (527)
365 PF06433 Me-amine-dh_H: Methyl 97.6 0.032 7E-07 53.6 21.8 263 258-535 17-319 (342)
366 PF02897 Peptidase_S9_N: Proly 97.5 0.032 6.9E-07 57.0 23.7 246 186-448 126-408 (414)
367 PF04841 Vps16_N: Vps16, N-ter 97.5 0.084 1.8E-06 53.6 25.8 182 306-501 62-256 (410)
368 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.011 2.4E-07 46.8 14.6 104 237-351 2-110 (111)
369 COG3386 Gluconolactonase [Carb 97.5 0.073 1.6E-06 51.4 23.4 200 241-455 31-253 (307)
370 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.18 3.9E-06 53.0 28.2 240 249-501 121-500 (527)
371 KOG2395 Protein involved in va 97.3 0.0081 1.8E-07 59.8 15.2 139 298-443 349-499 (644)
372 KOG1897 Damage-specific DNA bi 97.3 0.31 6.8E-06 52.6 27.6 289 231-535 527-855 (1096)
373 COG3386 Gluconolactonase [Carb 97.3 0.12 2.5E-06 50.0 22.5 205 288-505 30-256 (307)
374 KOG4640 Anaphase-promoting com 97.3 0.0014 3E-08 66.4 9.4 94 282-377 20-115 (665)
375 PF05096 Glu_cyclase_2: Glutam 97.2 0.17 3.7E-06 47.0 21.5 196 318-525 36-250 (264)
376 COG5276 Uncharacterized conser 97.1 0.23 5E-06 46.3 31.9 327 174-535 32-368 (370)
377 smart00320 WD40 WD40 repeats. 97.1 0.0012 2.7E-08 40.8 4.9 38 273-311 3-40 (40)
378 smart00320 WD40 WD40 repeats. 97.1 0.0013 2.9E-08 40.6 5.0 38 358-396 3-40 (40)
379 PHA02713 hypothetical protein; 97.1 0.032 7E-07 59.1 18.1 184 296-495 305-537 (557)
380 PF05694 SBP56: 56kDa selenium 97.1 0.051 1.1E-06 53.7 17.8 204 247-452 86-350 (461)
381 PF14727 PHTB1_N: PTHB1 N-term 97.1 0.41 8.9E-06 48.2 27.7 147 292-444 34-204 (418)
382 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.33 7.2E-06 48.7 23.4 88 413-500 306-407 (415)
383 COG3490 Uncharacterized protei 97.0 0.32 6.9E-06 45.2 23.0 236 287-533 72-345 (366)
384 KOG4441 Proteins containing BT 96.9 0.091 2E-06 55.7 19.8 232 247-493 284-548 (571)
385 PHA02713 hypothetical protein; 96.9 0.045 9.7E-07 58.0 17.3 187 247-447 303-536 (557)
386 PF10168 Nup88: Nuclear pore c 96.9 0.32 6.8E-06 52.7 23.4 74 325-400 85-181 (717)
387 KOG2444 WD40 repeat protein [G 96.9 0.0014 3.1E-08 58.3 4.7 144 296-445 31-178 (238)
388 TIGR03074 PQQ_membr_DH membran 96.8 0.2 4.2E-06 54.8 21.2 194 338-536 195-477 (764)
389 KOG2395 Protein involved in va 96.8 0.019 4.2E-07 57.2 12.0 139 250-398 348-500 (644)
390 PRK13616 lipoprotein LpqB; Pro 96.7 0.2 4.3E-06 53.2 19.9 152 282-443 349-524 (591)
391 KOG2079 Vacuolar assembly/sort 96.7 0.04 8.8E-07 59.6 14.3 97 247-348 98-198 (1206)
392 KOG2444 WD40 repeat protein [G 96.7 0.0023 5E-08 57.0 4.4 103 296-399 71-178 (238)
393 PRK13616 lipoprotein LpqB; Pro 96.7 0.18 3.8E-06 53.6 19.2 188 235-439 350-563 (591)
394 COG3204 Uncharacterized protei 96.6 0.44 9.5E-06 44.6 18.6 159 233-399 84-264 (316)
395 KOG4441 Proteins containing BT 96.6 0.1 2.2E-06 55.3 16.9 215 296-529 286-534 (571)
396 COG3490 Uncharacterized protei 96.5 0.18 4E-06 46.7 15.2 186 241-443 120-347 (366)
397 TIGR03074 PQQ_membr_DH membran 96.4 0.71 1.5E-05 50.5 22.4 190 296-500 261-486 (764)
398 PF05694 SBP56: 56kDa selenium 96.3 1.1 2.3E-05 44.8 20.7 185 210-401 93-345 (461)
399 PF15390 DUF4613: Domain of un 96.3 0.46 9.9E-06 48.7 18.5 143 280-423 54-211 (671)
400 PF14870 PSII_BNR: Photosynthe 96.2 1.2 2.6E-05 42.8 30.9 276 233-533 15-301 (302)
401 KOG2079 Vacuolar assembly/sort 96.2 0.029 6.3E-07 60.6 10.1 99 381-484 100-198 (1206)
402 KOG4499 Ca2+-binding protein R 96.1 0.45 9.8E-06 42.9 15.2 144 234-386 108-272 (310)
403 PF12894 Apc4_WD40: Anaphase-p 96.0 0.018 3.8E-07 38.1 4.9 34 231-266 8-41 (47)
404 PHA03098 kelch-like protein; P 95.9 0.36 7.8E-06 51.2 17.2 185 247-445 294-512 (534)
405 KOG3630 Nuclear pore complex, 95.9 0.099 2.1E-06 57.1 12.2 147 283-432 101-261 (1405)
406 COG5276 Uncharacterized conser 95.8 1.7 3.6E-05 40.8 23.3 196 280-492 84-286 (370)
407 PF12894 Apc4_WD40: Anaphase-p 95.8 0.034 7.4E-07 36.8 5.5 35 413-448 10-44 (47)
408 COG1520 FOG: WD40-like repeat 95.8 2.1 4.5E-05 43.0 21.1 195 296-502 69-279 (370)
409 TIGR02604 Piru_Ver_Nterm putat 95.7 2.6 5.7E-05 42.2 24.0 144 236-387 15-202 (367)
410 KOG3630 Nuclear pore complex, 95.7 0.14 3.1E-06 55.9 12.4 146 325-477 101-259 (1405)
411 PF14870 PSII_BNR: Photosynthe 95.7 2.2 4.8E-05 41.1 24.6 236 236-488 63-301 (302)
412 KOG2280 Vacuolar assembly/sort 95.6 0.7 1.5E-05 48.7 16.7 182 258-453 64-255 (829)
413 PF14655 RAB3GAP2_N: Rab3 GTPa 95.5 3.2 6.9E-05 41.9 24.2 53 235-292 57-118 (415)
414 PF15390 DUF4613: Domain of un 95.4 3.8 8.2E-05 42.3 20.4 151 180-344 53-220 (671)
415 KOG2280 Vacuolar assembly/sort 95.4 2.3 5E-05 45.0 19.3 184 304-500 63-255 (829)
416 KOG1916 Nuclear protein, conta 95.4 0.012 2.7E-07 62.1 3.3 122 211-336 107-236 (1283)
417 PHA03098 kelch-like protein; P 95.3 0.65 1.4E-05 49.2 16.3 184 296-493 296-513 (534)
418 PF07995 GSDH: Glucose / Sorbo 95.3 1.5 3.2E-05 43.3 17.6 241 187-439 5-330 (331)
419 PF12234 Rav1p_C: RAVE protein 95.2 0.74 1.6E-05 48.6 15.6 111 283-398 30-156 (631)
420 COG3204 Uncharacterized protei 95.2 2.9 6.3E-05 39.3 20.3 163 279-445 82-264 (316)
421 PF10214 Rrn6: RNA polymerase 94.9 7.9 0.00017 43.0 27.6 165 322-492 77-277 (765)
422 PHA02790 Kelch-like protein; P 94.8 1.2 2.5E-05 46.5 16.1 141 247-400 271-425 (480)
423 PRK10115 protease 2; Provision 94.7 8.2 0.00018 42.2 27.4 193 235-443 127-343 (686)
424 COG5290 IkappaB kinase complex 94.6 0.32 6.9E-06 51.3 10.7 100 285-387 249-356 (1243)
425 PF10647 Gmad1: Lipoprotein Lp 94.6 2.5 5.5E-05 39.8 16.3 149 284-436 25-187 (253)
426 PF10433 MMS1_N: Mono-function 94.4 6.9 0.00015 41.1 20.8 229 296-535 223-475 (504)
427 COG3823 Glutamine cyclotransfe 94.2 2.4 5.2E-05 37.7 13.8 178 338-525 57-248 (262)
428 PF08728 CRT10: CRT10; InterP 94.1 1.9 4.2E-05 46.1 15.5 101 296-397 115-245 (717)
429 TIGR03118 PEPCTERM_chp_1 conse 94.1 5.6 0.00012 37.8 19.4 207 326-535 24-278 (336)
430 PF12234 Rav1p_C: RAVE protein 94.0 1.7 3.6E-05 46.1 14.8 113 370-490 32-155 (631)
431 PHA02790 Kelch-like protein; P 94.0 2.1 4.5E-05 44.7 15.7 139 296-446 273-425 (480)
432 TIGR03548 mutarot_permut cycli 93.7 7.6 0.00017 38.0 18.9 101 296-400 74-196 (323)
433 PF10647 Gmad1: Lipoprotein Lp 93.7 6.3 0.00014 37.1 20.1 148 236-394 25-192 (253)
434 PF10313 DUF2415: Uncharacteri 93.3 0.29 6.2E-06 31.4 4.8 32 368-399 1-34 (43)
435 PLN02193 nitrile-specifier pro 93.2 9.5 0.00021 39.7 19.0 101 296-401 230-354 (470)
436 KOG1916 Nuclear protein, conta 93.2 0.033 7.2E-07 59.0 0.8 70 236-313 185-265 (1283)
437 PF14781 BBS2_N: Ciliary BBSom 93.0 3.9 8.4E-05 33.8 12.3 108 288-399 4-126 (136)
438 PF02333 Phytase: Phytase; In 92.9 11 0.00023 37.5 20.9 190 247-445 67-291 (381)
439 PLN02153 epithiospecifier prot 92.9 11 0.00023 37.4 18.9 61 296-358 87-170 (341)
440 TIGR02604 Piru_Ver_Nterm putat 92.8 6.3 0.00014 39.5 16.5 153 368-527 14-204 (367)
441 COG5167 VID27 Protein involved 92.8 4.2 9.1E-05 41.1 14.4 151 238-399 470-633 (776)
442 COG5167 VID27 Protein involved 92.7 2.8 6.2E-05 42.3 13.2 141 296-444 480-632 (776)
443 COG4257 Vgb Streptogramin lyas 92.5 9.2 0.0002 35.7 15.6 150 325-493 62-220 (353)
444 TIGR03118 PEPCTERM_chp_1 conse 92.5 10 0.00022 36.1 22.1 223 283-507 23-295 (336)
445 PRK14131 N-acetylneuraminic ac 92.5 13 0.00028 37.4 20.4 26 296-321 86-122 (376)
446 PRK13684 Ycf48-like protein; P 92.4 12 0.00026 36.9 28.5 278 234-534 45-329 (334)
447 PF10313 DUF2415: Uncharacteri 92.3 0.71 1.5E-05 29.6 5.7 32 325-356 1-34 (43)
448 PF10168 Nup88: Nuclear pore c 92.2 21 0.00045 39.1 23.9 74 283-358 85-182 (717)
449 TIGR03547 muta_rot_YjhT mutatr 92.1 13 0.00029 36.7 19.7 72 247-320 17-100 (346)
450 PRK10115 protease 2; Provision 91.8 23 0.00049 38.8 29.3 244 185-447 128-397 (686)
451 PRK13684 Ycf48-like protein; P 91.3 16 0.00035 36.0 25.1 157 324-490 172-330 (334)
452 PF14761 HPS3_N: Hermansky-Pud 91.3 11 0.00023 34.1 14.0 102 296-400 29-165 (215)
453 PF07995 GSDH: Glucose / Sorbo 91.2 16 0.00036 35.9 26.3 241 236-486 3-330 (331)
454 PF08728 CRT10: CRT10; InterP 90.9 1.4 3E-05 47.1 9.6 119 234-354 100-245 (717)
455 PF05096 Glu_cyclase_2: Glutam 90.6 15 0.00032 34.5 23.7 179 237-433 47-249 (264)
456 PF14761 HPS3_N: Hermansky-Pud 90.4 13 0.00028 33.5 15.0 139 249-397 29-213 (215)
457 PF14781 BBS2_N: Ciliary BBSom 90.0 9.9 0.00021 31.5 11.7 116 240-359 4-129 (136)
458 KOG2377 Uncharacterized conser 89.9 9.3 0.0002 38.2 13.4 139 256-399 41-186 (657)
459 KOG2247 WD40 repeat-containing 89.9 0.042 9.1E-07 54.5 -2.4 143 238-391 38-181 (615)
460 KOG2063 Vacuolar assembly/sort 89.8 24 0.00052 39.1 17.8 67 247-315 25-98 (877)
461 KOG4499 Ca2+-binding protein R 89.5 16 0.00036 33.3 19.9 197 296-507 28-257 (310)
462 COG4590 ABC-type uncharacteriz 89.5 7.1 0.00015 39.0 12.3 193 244-448 125-390 (733)
463 PF07569 Hira: TUP1-like enhan 89.3 2.8 6E-05 38.5 9.1 63 290-355 18-95 (219)
464 PLN02193 nitrile-specifier pro 89.1 31 0.00066 35.9 17.9 190 296-494 177-413 (470)
465 KOG2377 Uncharacterized conser 89.1 3.6 7.8E-05 41.0 10.0 118 233-356 65-186 (657)
466 KOG2247 WD40 repeat-containing 89.1 0.077 1.7E-06 52.7 -1.3 145 284-439 36-183 (615)
467 KOG1898 Splicing factor 3b, su 88.6 34 0.00074 38.2 17.5 174 306-490 854-1047(1205)
468 PF12768 Rax2: Cortical protei 88.6 9.7 0.00021 36.3 12.5 115 258-377 16-146 (281)
469 PF13449 Phytase-like: Esteras 88.3 27 0.00059 34.2 16.7 146 282-431 19-231 (326)
470 PLN02153 epithiospecifier prot 88.1 29 0.00062 34.3 18.4 101 296-400 34-169 (341)
471 TIGR03548 mutarot_permut cycli 87.8 29 0.00062 34.0 19.0 104 338-446 74-196 (323)
472 PF11635 Med16: Mediator compl 87.6 51 0.0011 36.6 19.2 179 213-393 70-345 (753)
473 COG1520 FOG: WD40-like repeat 87.5 33 0.00071 34.3 27.5 196 249-454 69-278 (370)
474 TIGR03547 muta_rot_YjhT mutatr 87.3 32 0.0007 34.0 20.6 12 390-401 168-179 (346)
475 PF07569 Hira: TUP1-like enhan 87.1 3.7 7.9E-05 37.7 8.5 63 381-444 23-95 (219)
476 PF05935 Arylsulfotrans: Aryls 86.3 35 0.00076 35.5 16.2 106 288-400 153-303 (477)
477 KOG1900 Nuclear pore complex, 86.0 11 0.00024 42.8 12.5 152 237-399 81-273 (1311)
478 smart00036 CNH Domain found in 85.8 36 0.00077 33.0 23.0 102 296-399 14-132 (302)
479 smart00036 CNH Domain found in 85.5 37 0.00079 32.9 25.6 235 248-500 13-279 (302)
480 PRK14131 N-acetylneuraminic ac 85.2 44 0.00095 33.5 17.7 11 391-401 190-200 (376)
481 PF10395 Utp8: Utp8 family; I 84.8 60 0.0013 34.8 20.2 213 219-443 63-304 (670)
482 COG5290 IkappaB kinase complex 84.8 31 0.00067 37.2 14.3 67 281-354 75-141 (1243)
483 KOG1983 Tomosyn and related SN 84.7 16 0.00035 41.6 13.5 35 230-266 31-65 (993)
484 PF11239 DUF3040: Protein of u 84.4 0.82 1.8E-05 34.5 2.3 15 6-20 3-17 (82)
485 KOG4460 Nuclear pore complex, 84.3 13 0.00029 37.9 11.1 88 414-501 103-208 (741)
486 KOG2714 SETA binding protein S 84.2 33 0.00072 34.2 13.5 125 296-447 236-374 (465)
487 KOG3522 Predicted guanine nucl 83.7 8.8 0.00019 41.4 10.1 155 234-399 514-698 (925)
488 COG4257 Vgb Streptogramin lyas 83.4 40 0.00087 31.7 22.6 196 236-446 63-264 (353)
489 KOG3616 Selective LIM binding 83.1 15 0.00032 39.2 11.2 69 235-313 15-83 (1636)
490 KOG4460 Nuclear pore complex, 83.1 60 0.0013 33.4 18.3 75 326-401 105-201 (741)
491 PF03022 MRJP: Major royal jel 82.7 47 0.001 31.9 18.2 170 306-479 35-253 (287)
492 TIGR03606 non_repeat_PQQ dehyd 82.4 43 0.00094 34.4 14.3 60 366-426 28-90 (454)
493 PF12657 TFIIIC_delta: Transcr 82.2 10 0.00023 33.2 8.9 30 415-444 86-121 (173)
494 KOG2006 WD40 repeat protein [G 82.1 12 0.00027 41.2 10.7 66 247-315 159-227 (1023)
495 COG3292 Predicted periplasmic 81.4 73 0.0016 33.3 16.0 270 234-532 164-443 (671)
496 KOG1900 Nuclear pore complex, 81.0 16 0.00035 41.6 11.3 158 281-445 77-273 (1311)
497 PF08801 Nucleoporin_N: Nup133 80.3 68 0.0015 32.8 15.4 31 415-445 190-220 (422)
498 KOG1898 Splicing factor 3b, su 80.3 1.1E+02 0.0023 34.6 16.7 170 349-533 855-1045(1205)
499 PF05935 Arylsulfotrans: Aryls 78.8 88 0.0019 32.6 21.2 147 345-502 126-312 (477)
500 PF12768 Rax2: Cortical protei 78.1 44 0.00096 31.9 12.1 97 347-449 16-128 (281)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-50 Score=367.37 Aligned_cols=329 Identities=17% Similarity=0.243 Sum_probs=290.8
Q ss_pred ceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEEe
Q 009380 177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGS 255 (536)
Q Consensus 177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~ 255 (536)
..+.||...|-|+.|+|+|+.++ +++-|.+++|||+..+ |....++|...|.|++|+| ||+.||+|+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~----------tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsP--Dgk~iASG~ 176 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLV----------TGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSP--DGKKIASGS 176 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEE----------ecCCCceEEeeccCCCCcceeecCCccEEEEEEECC--Ccchhhccc
Confidence 45789999999999999999999 5578889999998664 5567799999999999999 999999999
Q ss_pred CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC----CCEEEEEECCCeEEEEECCCCeEE-EeecCCCceeEE
Q 009380 256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC----LSKIFTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFSL 330 (536)
Q Consensus 256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~----~~~l~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~l 330 (536)
.||+|++||..++ ......+.+|...|++++|.|-. ..+|++++.||.|+|||+..+.+. .+.+|..+|+|+
T Consensus 177 ~dg~I~lwdpktg---~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCv 253 (480)
T KOG0271|consen 177 KDGSIRLWDPKTG---QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCV 253 (480)
T ss_pred cCCeEEEecCCCC---CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEE
Confidence 9999999999885 45667899999999999998732 268999999999999999987655 566899999999
Q ss_pred EecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEe-----------cCC--------------------
Q 009380 331 SQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFN-----------PRN-------------------- 379 (536)
Q Consensus 331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~-----------p~~-------------------- 379 (536)
+|--++ ++++|+.|++|++|+...|.+.+.+++|...|+.++++ |.+
T Consensus 254 rwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 254 RWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred EEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 998664 99999999999999999999999999999999999987 212
Q ss_pred ----CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe-c
Q 009380 380 ----PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH-H 454 (536)
Q Consensus 380 ----~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~-~ 454 (536)
+..|++|+.|.++.+|+....+ ..+..+.+|..-|+++.||||+++|++++.|..|++||.++++.+..++ |
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~k---kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH 408 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSK---KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH 408 (480)
T ss_pred hccCcceeEEecCCceEEEecccccc---cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc
Confidence 2359999999999999977643 2445667999999999999999999999999999999999999998885 3
Q ss_pred cCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 455 NNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 455 ~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
.. .++.++|+.|.++|++|+.|.+++||++.+.+....|.+|...+. .+.|+| ||..+++|+.|..+++|.
T Consensus 409 v~------~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf--~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 409 VA------AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVF--AVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cc------eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEE--EEEecC-CCceeecCCCceEEEeec
Confidence 22 456689999999999999999999999999999999998777665 688999 789999999999999995
No 2
>KOG4328 consensus WD40 protein [Function unknown]
Probab=100.00 E-value=4.5e-50 Score=374.48 Aligned_cols=311 Identities=35% Similarity=0.620 Sum_probs=275.4
Q ss_pred cCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC
Q 009380 224 LKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY 303 (536)
Q Consensus 224 ~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~ 303 (536)
..+..+.+.|.++|++++|||+++.+++|+|++-|+|.+||+.+.+.....+..+..|+++|.+|.|+|.+...+++.|+
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc
Confidence 34566789999999999999987778999999999999999975554567888999999999999999999899999999
Q ss_pred CCeEEEEECCCCeEEEeecC---CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCC
Q 009380 304 DGLIRLMDAEKEVFDLVYSS---EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRN 379 (536)
Q Consensus 304 dg~I~vwd~~~~~~~~~~~~---~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~ 379 (536)
||+|++-|+++.....++.. ...+.++.|+.+. ..++++..=|.+.+||++++.. ...+..|...|++|+++|..
T Consensus 256 DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC 334 (498)
T ss_pred CceeeeeeecchhhHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC
Confidence 99999999999877666544 3467788888887 4566666666999999998766 67778899999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeC----CCCCcceEEecc
Q 009380 380 PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG----VNFENTSMIHHN 455 (536)
Q Consensus 380 ~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~----~~~~~~~~~~~~ 455 (536)
+++|+|++.|++++|||+|....+....+....|...|.+++|||++-.|+|.+.|..|+|||. ....+..++.|+
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn 414 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN 414 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeecc
Confidence 9999999999999999999987554345777799999999999998777999999999999998 566788999999
Q ss_pred CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 456 NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 456 ~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
+.+++|++.+++.|.|+..+|++|..-..|.|||...++.+..+..+....+++...|||.+..+++.++..|.|+||.-
T Consensus 415 ~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 415 NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred CcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 99999999999999999999999999999999999999989999888888888999999988568888899999999964
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.6e-44 Score=325.16 Aligned_cols=287 Identities=16% Similarity=0.229 Sum_probs=247.5
Q ss_pred ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380 228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLI 307 (536)
Q Consensus 228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I 307 (536)
....+|.+.|.|+.|+| +|..|++|+.|.++++||+.+ ..+.++.++|...|.|++|+||+ ..|++|+.||+|
T Consensus 109 sS~~GH~e~Vl~~~fsp--~g~~l~tGsGD~TvR~WD~~T----eTp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I 181 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSP--TGSRLVTGSGDTTVRLWDLDT----ETPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSI 181 (480)
T ss_pred cccCCCCCcEEEEEecC--CCceEEecCCCceEEeeccCC----CCcceeecCCccEEEEEEECCCc-chhhccccCCeE
Confidence 34578999999999999 999999999999999999998 78899999999999999999999 999999999999
Q ss_pred EEEECCCCeEE--EeecCCCceeEEEecCCC----CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCC
Q 009380 308 RLMDAEKEVFD--LVYSSEYAVFSLSQQPNN----VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPN 381 (536)
Q Consensus 308 ~vwd~~~~~~~--~~~~~~~~i~~l~~~~~~----~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~ 381 (536)
++||..++... .+.+|...|++++|.|-. ..+|++++.||.|+|||+..+.++..+.+|..+|+||.|-.+ .
T Consensus 182 ~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~--g 259 (480)
T KOG0271|consen 182 RLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE--G 259 (480)
T ss_pred EEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC--c
Confidence 99999887653 566899999999997732 258999999999999999999999999999999999999854 5
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEc-----------cCCC-----------------------
Q 009380 382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFS-----------PSGS----------------------- 427 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~s-----------p~g~----------------------- 427 (536)
++++||.|++|++|+...+. .+..+.+|...|+.++.+ |.+.
T Consensus 260 liySgS~DrtIkvw~a~dG~----~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 260 LIYSGSQDRTIKVWRALDGK----LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred eEEecCCCceEEEEEccchh----HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 99999999999999998864 566677999999999877 3333
Q ss_pred --eEEEEeCCCcEEEEeCCCCC-cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCce
Q 009380 428 --SLATTSFDDTIGIWSGVNFE-NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYI 504 (536)
Q Consensus 428 --~l~t~s~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~ 504 (536)
.|++|+.|.++.+|+....+ ++... +++...+..+.||||++|+++++.|..|++|+..+|+.+.+|.+|-.
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~rm-----tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~ 410 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPITRM-----TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA 410 (480)
T ss_pred cceeEEecCCceEEEecccccccchhhh-----hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc
Confidence 49999999999999975443 33222 22222334488999999999999999999999999999999998766
Q ss_pred eeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 505 SAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 505 ~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
.+. .++|+. |.++|++|+.|.+|+||++
T Consensus 411 ~VY--qvawsa-DsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 411 AVY--QVAWSA-DSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred eeE--EEEecc-CccEEEEcCCCceEEEEEe
Confidence 655 567766 5689999999999999997
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-43 Score=328.56 Aligned_cols=282 Identities=20% Similarity=0.272 Sum_probs=253.9
Q ss_pred cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC-CCCEEEEEECCCeEEEEE
Q 009380 233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY-CLSKIFTSCYDGLIRLMD 311 (536)
Q Consensus 233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~s~s~dg~I~vwd 311 (536)
-..+|..+.|++ +++.|+||+.+|.++||+..+ ...+..|.+|...|.++.|+|. ....|+||+.||++++|+
T Consensus 174 d~rPis~~~fS~--ds~~laT~swsG~~kvW~~~~----~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 174 DTRPISGCSFSR--DSKHLATGSWSGLVKVWSVPQ----CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred CCCcceeeEeec--CCCeEEEeecCCceeEeecCC----cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence 467899999999 999999999999999999998 6889999999999999999998 347899999999999999
Q ss_pred CCCCe-EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380 312 AEKEV-FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG 390 (536)
Q Consensus 312 ~~~~~-~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg 390 (536)
+.+.. +..+.+|...|..++|+|+| .+|.+++.|.+-++||++++..+....+|...|.+++|+||| .+++||+.|.
T Consensus 248 ~~~e~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~ 325 (459)
T KOG0272|consen 248 LSQETPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG-SLAATGGLDS 325 (459)
T ss_pred cCCCcchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhcccccccceeEecCCC-ceeeccCccc
Confidence 99854 45566889999999999999 899999999999999999999998889999999999999998 6999999999
Q ss_pred cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEc
Q 009380 391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG 470 (536)
Q Consensus 391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s 470 (536)
.-+|||+|++. .++.+.+|...|.++.|+|+|..|+||+.|++++|||++....+.++..+.. .++ .+.|+
T Consensus 326 ~~RvWDlRtgr----~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n---lVS--~Vk~~ 396 (459)
T KOG0272|consen 326 LGRVWDLRTGR----CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN---LVS--QVKYS 396 (459)
T ss_pred hhheeecccCc----EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc---hhh--heEec
Confidence 99999999975 6677779999999999999999999999999999999998888777743221 223 36789
Q ss_pred C-CCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 471 W-DDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 471 ~-~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
| .|.+|++++.|++++||...+..++..+.+|...++.+ ..+| ++.++++++.|.++++|.
T Consensus 397 p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~--Dis~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 397 PQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISL--DISP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEE--Eecc-CCceEEEeccCceeeecc
Confidence 8 68899999999999999999999999999998888754 5555 679999999999999996
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-43 Score=327.24 Aligned_cols=293 Identities=21% Similarity=0.275 Sum_probs=260.5
Q ss_pred cccccccceecccccceeeeecCCCCcccccccccccccccccccceEEeccccc-CccccccccCCceEEEEEEecCCc
Q 009380 170 CKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL-KPENIARIMPGRITQMKFLPCSDV 248 (536)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~-~~~~~~~~~~~~I~~v~~~p~~~~ 248 (536)
.+...+..--.|....+..|.|+.|++.++ +++.+|.+++|+... .....+++|.+.|.++.|+|..++
T Consensus 162 ~~~~~l~~SQ~gd~rPis~~~fS~ds~~la----------T~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 162 LQSLELVCSQVGDTRPISGCSFSRDSKHLA----------TGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred hhhhhhhhhhccCCCcceeeEeecCCCeEE----------EeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCc
Confidence 344555555567788999999999999999 568999999999743 345567999999999999995346
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-EEeecCCCce
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-DLVYSSEYAV 327 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-~~~~~~~~~i 327 (536)
.-||+|+.||+|++|++++ ...+..+.+|...|..++|+|+| ++|+|+++|.+-++||++++.. ....+|...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~----e~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQ----ETPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCC----CcchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhccccccc
Confidence 7899999999999999997 57889999999999999999999 9999999999999999998754 4556899999
Q ss_pred eEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380 328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407 (536)
Q Consensus 328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~ 407 (536)
.+++|+++| .++++|+.|..-+|||+|++.++..+.+|...|.+|+|+|.| +.|||||.|++++|||++.-+ ..
T Consensus 307 ~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~----~l 380 (459)
T KOG0272|consen 307 FSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRS----EL 380 (459)
T ss_pred ceeEecCCC-ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccc----cc
Confidence 999999999 899999999999999999999999999999999999999977 899999999999999999843 56
Q ss_pred ceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEe-ccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380 408 MKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIH-HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV 485 (536)
Q Consensus 408 ~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I 485 (536)
..+.+|..-|+.+.|+| .|.+|+|+++|++++||...++.++..+. |.. .++.+..+++++++++++.|+++
T Consensus 381 y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~------kV~s~Dis~d~~~i~t~s~DRT~ 454 (459)
T KOG0272|consen 381 YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG------KVISLDISPDSQAIATSSFDRTI 454 (459)
T ss_pred eecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc------ceEEEEeccCCceEEEeccCcee
Confidence 67779999999999999 88999999999999999999999998874 332 34457789999999999999999
Q ss_pred EEEc
Q 009380 486 EVIS 489 (536)
Q Consensus 486 ~v~d 489 (536)
++|.
T Consensus 455 KLW~ 458 (459)
T KOG0272|consen 455 KLWR 458 (459)
T ss_pred eecc
Confidence 9995
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-40 Score=291.75 Aligned_cols=292 Identities=16% Similarity=0.212 Sum_probs=260.4
Q ss_pred cCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC
Q 009380 224 LKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY 303 (536)
Q Consensus 224 ~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~ 303 (536)
.....++++|.+.|+++.|++ |.++|++++.||.+.|||.-+ ...++.+.-....|..++|+|.+ +++++|+.
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~--Dsr~ivSaSqDGklIvWDs~T----tnK~haipl~s~WVMtCA~sPSg-~~VAcGGL 117 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWST--DSRRIVSASQDGKLIVWDSFT----TNKVHAIPLPSSWVMTCAYSPSG-NFVACGGL 117 (343)
T ss_pred eeeEEEecccccceeeeEecC--CcCeEEeeccCCeEEEEEccc----ccceeEEecCceeEEEEEECCCC-CeEEecCc
Confidence 445678999999999999999 999999999999999999988 56677777788999999999999 99999999
Q ss_pred CCeEEEEECCCC-------eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEe
Q 009380 304 DGLIRLMDAEKE-------VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFN 376 (536)
Q Consensus 304 dg~I~vwd~~~~-------~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~ 376 (536)
|+...||++.+. ....+.+|.+.+.|+.|.++ +.|++++.|.+..+||+++++.+..|.+|.+.|.++++.
T Consensus 118 dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~ 195 (343)
T KOG0286|consen 118 DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLS 195 (343)
T ss_pred CceeEEEecccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecC
Confidence 999999999853 23446689999999999986 589999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC
Q 009380 377 PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN 456 (536)
Q Consensus 377 p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~ 456 (536)
|..++.|++|+.|+..++||+|.+. ....+.+|...|+++.|.|+|.-|++|+.|++.++||++..+.+..+.+..
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~~----c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~ 271 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSGQ----CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS 271 (343)
T ss_pred CCCCCeEEecccccceeeeeccCcc----eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc
Confidence 9666999999999999999999964 566777999999999999999999999999999999999998888887654
Q ss_pred CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 457 QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 457 ~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
... .++ .+.||..|++|++|..|..+.|||.-.++.+..|.+|...+. .+..+| ||..|++|+.|..|+||.
T Consensus 272 ~~~-git--Sv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvS--cl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 272 IIC-GIT--SVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVS--CLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccC-Cce--eEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeE--EEEECC-CCcEEEecchhHheeecC
Confidence 433 233 378999999999999999999999999999999998776665 456667 789999999999999994
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.4e-39 Score=285.76 Aligned_cols=292 Identities=21% Similarity=0.203 Sum_probs=250.6
Q ss_pred ccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEE
Q 009380 173 ENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMV 251 (536)
Q Consensus 173 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l 251 (536)
+..+.+|+||.+.|.++.+++|.+.+. +.+.||.+-+||.... ....+..-...|..++|+| +|+++
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~iv----------SaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP--Sg~~V 112 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIV----------SASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP--SGNFV 112 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEE----------eeccCCeEEEEEcccccceeEEecCceeEEEEEECC--CCCeE
Confidence 455689999999999999999999998 5589999999996332 2233344578999999999 99999
Q ss_pred EEEeCCCcEEEEECCCCCC--CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCcee
Q 009380 252 VAGSKLGNITFWNLDSQQD--EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVF 328 (536)
Q Consensus 252 ~tg~~dg~v~iwd~~~~~~--~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~ 328 (536)
|+|+-|+...||++.+... .......+.+|++.+.|+.|.+| ..|+|+|.|.+..+||+++++....+ +|.+.|.
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~ 190 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM 190 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEecCCcccEE
Confidence 9999999999999986422 23455679999999999999986 69999999999999999999766554 7999999
Q ss_pred EEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc
Q 009380 329 SLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM 408 (536)
Q Consensus 329 ~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~ 408 (536)
+++++|..++.+++|+-|+..++||+|.+.++++|.+|+..|++|+|+|+| .-|++|+.|+++++||+|... .+
T Consensus 191 slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~-----~~ 264 (343)
T KOG0286|consen 191 SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQ-----EL 264 (343)
T ss_pred EEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCC-CeeeecCCCceeEEEeecCCc-----EE
Confidence 999999666999999999999999999999999999999999999999988 799999999999999999853 22
Q ss_pred eee---cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380 409 KVL---SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV 485 (536)
Q Consensus 409 ~~~---~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I 485 (536)
..+ .-..+|++++||..|++|++|..|.++.+||.-.++....+.. +...+++ +..+|||..|++|+.|..+
T Consensus 265 a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G---HeNRvSc--l~~s~DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 265 AVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG---HENRVSC--LGVSPDGMAVATGSWDSTL 339 (343)
T ss_pred eeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec---cCCeeEE--EEECCCCcEEEecchhHhe
Confidence 333 3456899999999999999999999999999988877777642 2224555 4469999999999999999
Q ss_pred EEEc
Q 009380 486 EVIS 489 (536)
Q Consensus 486 ~v~d 489 (536)
+||.
T Consensus 340 riW~ 343 (343)
T KOG0286|consen 340 RIWA 343 (343)
T ss_pred eecC
Confidence 9994
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-38 Score=279.19 Aligned_cols=297 Identities=16% Similarity=0.201 Sum_probs=254.2
Q ss_pred cccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC------ccccccccCCceEEEEEEec
Q 009380 172 DENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK------PENIARIMPGRITQMKFLPC 245 (536)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~------~~~~~~~~~~~I~~v~~~p~ 245 (536)
.+.++-++++|.++|..+...+.+.-+.. ..++|..+.+|++..+ +...+++|...|..+..++
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~---------sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~- 73 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILV---------SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS- 73 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEE---------EcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-
Confidence 35677889999999999999888654442 4688889999998543 2345688999999999999
Q ss_pred CCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC--
Q 009380 246 SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS-- 323 (536)
Q Consensus 246 ~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~-- 323 (536)
||++.++++.|+.+++||+.+ ++....|.+|..-|.+++|++++ .++++|+.|.+|.+|++..+....+..+
T Consensus 74 -dg~~alS~swD~~lrlWDl~~----g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~~~ 147 (315)
T KOG0279|consen 74 -DGNFALSASWDGTLRLWDLAT----GESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHEDSH 147 (315)
T ss_pred -CCceEEeccccceEEEEEecC----CcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecCCC
Confidence 999999999999999999998 78889999999999999999998 9999999999999999988766555544
Q ss_pred CCceeEEEecCCC-CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009380 324 EYAVFSLSQQPNN-VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT 402 (536)
Q Consensus 324 ~~~i~~l~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~ 402 (536)
..-|.|++|+|+. .-+|++++.|++|++||+++.+....+.+|.+.++.+.++||| .+.++|+.||.+.+||++.++
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k- 225 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGK- 225 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCc-
Confidence 6889999999984 3689999999999999999999999999999999999999998 799999999999999999864
Q ss_pred CCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC----CCCceeeeeEEEEcCCCCEEEE
Q 009380 403 DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN----QTGRWISSFRAIWGWDDSCVFI 478 (536)
Q Consensus 403 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~~g~~l~~ 478 (536)
.+....|...|.+++|+|+...|+.+. +..|+|||+.+...+..+.... .......++.++|+++|..|++
T Consensus 226 ----~lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~ 300 (315)
T KOG0279|consen 226 ----NLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA 300 (315)
T ss_pred ----eeEeccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence 466778999999999999876555544 5569999999888776664221 1122345667899999999999
Q ss_pred EcCCCcEEEEcCC
Q 009380 479 GNMTRTVEVISPA 491 (536)
Q Consensus 479 gs~dg~I~v~d~~ 491 (536)
|-.|+.|++|.+.
T Consensus 301 g~td~~irv~qv~ 313 (315)
T KOG0279|consen 301 GYTDNVIRVWQVA 313 (315)
T ss_pred eecCCcEEEEEee
Confidence 9999999999764
No 9
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=283.60 Aligned_cols=296 Identities=20% Similarity=0.321 Sum_probs=255.6
Q ss_pred ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC
Q 009380 226 PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG 305 (536)
Q Consensus 226 ~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg 305 (536)
|...+.+|.+.|+.+.|+| +|.+||+|+.|..|.+|++... .+....+++|++.|..+.|.+++ +.|++++.|.
T Consensus 39 p~m~l~gh~geI~~~~F~P--~gs~~aSgG~Dr~I~LWnv~gd---ceN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk 112 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHP--DGSCFASGGSDRAIVLWNVYGD---CENFWVLKGHSGAVMELHGMRDG-SHILSCGTDK 112 (338)
T ss_pred hhhhcCCCcceEEEEEECC--CCCeEeecCCcceEEEEecccc---ccceeeeccccceeEeeeeccCC-CEEEEecCCc
Confidence 4556788999999999999 9999999999999999998753 45667788999999999999999 9999999999
Q ss_pred eEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEE
Q 009380 306 LIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMA 384 (536)
Q Consensus 306 ~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~ 384 (536)
+|+.||+++|+....+ .|..-+.+++-...|+.++.+|+.||++++||+|+...++++. ..-.++++.|..++ ..+.
T Consensus 113 ~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s-~qv~ 190 (338)
T KOG0265|consen 113 TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTS-DQVI 190 (338)
T ss_pred eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccc-ccee
Confidence 9999999999876544 5778888888777788899999999999999999998888875 56789999999877 5788
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceE---EeccCCCCce
Q 009380 385 TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSM---IHHNNQTGRW 461 (536)
Q Consensus 385 s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~---~~~~~~~~~~ 461 (536)
+|+-|+.|++||++... ....+.+|...|+++..+|+|.++.+-+.|.++++||++-..+... +......+-.
T Consensus 191 sggIdn~ikvWd~r~~d----~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe 266 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKND----GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE 266 (338)
T ss_pred eccccCceeeeccccCc----ceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhh
Confidence 99999999999999854 5667779999999999999999999999999999999986543322 2222233445
Q ss_pred eeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 462 ISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 462 ~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
...+.+.|+|++.++.+|+.|+.+++||..+...++.+++|...+. .+.|||.. .+|.+++.|.+|++=++|
T Consensus 267 knlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn--~~~Fhp~e-~iils~~sdk~i~lgei~ 338 (338)
T KOG0265|consen 267 KNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVN--EVDFHPTE-PIILSCSSDKTIYLGEID 338 (338)
T ss_pred hhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEE--EeeecCCC-cEEEEeccCceeEeeccC
Confidence 5677899999999999999999999999999999999999877766 57899965 999999999999986554
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-38 Score=276.59 Aligned_cols=292 Identities=16% Similarity=0.208 Sum_probs=247.5
Q ss_pred ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC-CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD-EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
..+++|++.|+.++..+. +...|++++.|..+.+|++...+. .+..++.+.+|...|..+..++++ ++.++++.|++
T Consensus 9 ~tl~gh~d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~ 86 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIK-NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGT 86 (315)
T ss_pred eeecCCCceEEEEEeecC-CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC-ceEEeccccce
Confidence 346899999999999984 568999999999999999976432 356788999999999999999999 99999999999
Q ss_pred EEEEECCCCeE-EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec--cCCCeEEEEEecCC-CCE
Q 009380 307 IRLMDAEKEVF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL--HEARINTIDFNPRN-PNI 382 (536)
Q Consensus 307 I~vwd~~~~~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h~~~i~~i~~~p~~-~~~ 382 (536)
+++||+.+++. ..+.+|...|.+++|++++ ..+++|+.|.+|.+|++.. .+..++.. +.+.|.|++|+|.. .-+
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 99999999754 4566899999999999998 8999999999999999864 44455543 37899999999973 359
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCcee
Q 009380 383 MATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWI 462 (536)
Q Consensus 383 l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 462 (536)
|++++.|++|++||+++.+ ....+.+|.+.++.+.+||||.++++|+.||.+.+||++.++.+..+.+.. .+
T Consensus 165 Ivs~s~DktvKvWnl~~~~----l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~----~v 236 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQ----LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFD----IV 236 (315)
T ss_pred EEEccCCceEEEEccCCcc----hhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCC----eE
Confidence 9999999999999999853 555667999999999999999999999999999999999999988776544 23
Q ss_pred eeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCc-------eeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 463 SSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY-------ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 463 ~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~-------~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
..++|+|+...|+.+. +..|+|||+.++.++..+.... ..+.+..++|++ +|..|.+|-.|+.|++|.+
T Consensus 237 --~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 237 --NSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred --eeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcEEEeeecCCcEEEEEe
Confidence 3478999876666554 5569999999998888776432 245667889988 7899999999999999986
No 11
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8.2e-40 Score=308.00 Aligned_cols=293 Identities=18% Similarity=0.282 Sum_probs=254.8
Q ss_pred ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380 228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLI 307 (536)
Q Consensus 228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I 307 (536)
....+|+..|+++.|.|. .+.+|++|+.|+.|+||++... ..++++|.+|..+|.+++|++++ ..|+|+|+|+.|
T Consensus 208 ~~~~gH~kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~l 282 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFL 282 (503)
T ss_pred eeccCCccccchhhhccc-eeeEEEecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccC-Ceeeeeecceee
Confidence 345789999999999996 6789999999999999999874 78999999999999999999999 999999999999
Q ss_pred EEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380 308 RLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 308 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s 387 (536)
++||+++|++...+.....++|+.|+|++.+.+++|+.|+.|+.||+|+++.++.+..|-+.|..|.|-+.| ..+++.+
T Consensus 283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g-~rFissS 361 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEG-RRFISSS 361 (503)
T ss_pred eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCC-ceEeeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999977 7899999
Q ss_pred CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc---eEEeccCCCCceeee
Q 009380 388 TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT---SMIHHNNQTGRWISS 464 (536)
Q Consensus 388 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~---~~~~~~~~~~~~~~~ 464 (536)
.|++++||+.+..- ........+.....++..+|++.++++-+.|+.|.+|.+...-.. ..+......| ..
T Consensus 362 Ddks~riWe~~~~v---~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG---ys 435 (503)
T KOG0282|consen 362 DDKSVRIWENRIPV---PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG---YS 435 (503)
T ss_pred cCccEEEEEcCCCc---cchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC---ce
Confidence 99999999998742 111222234556778999999999999999999999987543222 2222222222 23
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 465 FRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 465 ~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
+.+.|||||.+|++|+.||.+.+||..+-+.+..++.|... ++.+.|||.....+|+|+.||.|++|+
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~--ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQP--CIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcc--eEEEEecCCCcceeEecccCceeEecC
Confidence 45889999999999999999999999999999999987443 357899999889999999999999996
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-37 Score=290.56 Aligned_cols=321 Identities=20% Similarity=0.285 Sum_probs=273.2
Q ss_pred cccccceeeeecCCCCc-ccccccccccccccccccceEEecccccCc-----ccccc----------ccCCceEEEEEE
Q 009380 180 KDEFNGFKTCKDEGLGV-GSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-----ENIAR----------IMPGRITQMKFL 243 (536)
Q Consensus 180 ~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-----~~~~~----------~~~~~I~~v~~~ 243 (536)
-.|...|.+|.+.|-.. ++++ ++.+...++|++.... ..+++ .....|++++|+
T Consensus 175 l~~~~~V~~~~WnP~~~~llas----------g~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn 244 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLAS----------GSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN 244 (524)
T ss_pred ccCCCceEEEecCchhhhhhhc----------cCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec
Confidence 34999999999999988 6663 4666788999985411 11111 114689999999
Q ss_pred ecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC
Q 009380 244 PCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS 323 (536)
Q Consensus 244 p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~ 323 (536)
. +|.+||+|+.||.++||+.. +..+.++..|.++|.++.|+..| ++|++++.|+++.+||..++.....+..
T Consensus 245 ~--~G~~LatG~~~G~~riw~~~-----G~l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 245 N--DGTLLATGSEDGEARIWNKD-----GNLISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEF 316 (524)
T ss_pred C--CCCeEEEeecCcEEEEEecC-----chhhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeee
Confidence 9 99999999999999999998 67889999999999999999999 9999999999999999999988777664
Q ss_pred -CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009380 324 -EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT 402 (536)
Q Consensus 324 -~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~ 402 (536)
..+-..+.|..+. -+++.+.||.|+++-+....++.++.+|.+.|.+|.|+|.+ .+|+++|.|++++||......
T Consensus 317 ~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~- 392 (524)
T KOG0273|consen 317 HSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSN- 392 (524)
T ss_pred ccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCc-
Confidence 4455889998764 79999999999999999999999999999999999999988 799999999999999987643
Q ss_pred CCCCcceeecccCceeEEEEccCC---------CeEEEEeCCCcEEEEeCCCCCcceEE-eccCCCCceeeeeEEEEcCC
Q 009380 403 DKPEPMKVLSHKRAVHSAYFSPSG---------SSLATTSFDDTIGIWSGVNFENTSMI-HHNNQTGRWISSFRAIWGWD 472 (536)
Q Consensus 403 ~~~~~~~~~~~~~~v~~l~~sp~g---------~~l~t~s~dg~I~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~ 472 (536)
....+..|...|..+.|+|.| ..+++++.|++|++||+..+.+++.+ .|.. .++.++|+|+
T Consensus 393 ---~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~------pVysvafS~~ 463 (524)
T KOG0273|consen 393 ---SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE------PVYSVAFSPN 463 (524)
T ss_pred ---chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC------ceEEEEecCC
Confidence 556677899999999999965 37999999999999999999999987 3332 2344889999
Q ss_pred CCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 473 DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 473 g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
|+|+++|+.||.|.+|++.+++.++.+.+... + ..++|+- +|+.|..+-.||.+++-|+
T Consensus 464 g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~--I-fel~Wn~-~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG--I-FELCWNA-AGDKLGACASDGSVCVLDL 522 (524)
T ss_pred CcEEEecCCCCeeEeccccchheeEeecCCCe--E-EEEEEcC-CCCEEEEEecCCCceEEEe
Confidence 99999999999999999999999888876432 2 4577776 5699999999999999875
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.9e-37 Score=267.54 Aligned_cols=288 Identities=17% Similarity=0.304 Sum_probs=244.6
Q ss_pred cccccceEEecccccCcccccccc-CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEE
Q 009380 210 KIEVGSCVDIGSLTLKPENIARIM-PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGI 288 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~~~~~~~~~~-~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l 288 (536)
+.++|-+|++|..........-.| .+.|+.+...| ++.+||+++. ..|++||+.+.. ..++.+|.+|+..|+++
T Consensus 15 sA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTp--dk~~LAaa~~-qhvRlyD~~S~n--p~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 15 SAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITP--DKKDLAAAGN-QHVRLYDLNSNN--PNPVATFEGHTKNVTAV 89 (311)
T ss_pred eccCcceeeeeehhcCeEEEEEecCccceeeEEEcC--CcchhhhccC-CeeEEEEccCCC--CCceeEEeccCCceEEE
Confidence 679999999999865544333334 67899999999 9999999885 589999999864 45899999999999999
Q ss_pred EEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccC
Q 009380 289 VTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHE 367 (536)
Q Consensus 289 ~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~ 367 (536)
.|..+| ..+++||.||+++|||++...+...+.+..+|+++..+|+. ..|++|..+|.|++||+....+...+. ...
T Consensus 90 gF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 90 GFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EEeecC-eEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 999999 99999999999999999999999999999999999999998 789999999999999999887766655 345
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC--CCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380 368 ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD--KPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 368 ~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~--~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~ 445 (536)
..|.++...|+| .+++.+...|.+++|++-..... ...+.++..|.+.+..+.+||++++|++++.|.+++||+..+
T Consensus 168 ~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 168 TSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred cceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 689999999998 68888999999999999774321 123344567999999999999999999999999999999988
Q ss_pred C-CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeee
Q 009380 446 F-ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCR 510 (536)
Q Consensus 446 ~-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~ 510 (536)
+ +....+. ...+|+.. ++||.||.||++|+.|+.+++|++..++.+..+.+|+...+++.
T Consensus 247 ~~kle~~l~---gh~rWvWd--c~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 247 FFKLELVLT---GHQRWVWD--CAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA 307 (311)
T ss_pred ceeeEEEee---cCCceEEe--eeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEE
Confidence 7 2222221 22346554 88999999999999999999999999999999999988877543
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1e-37 Score=287.79 Aligned_cols=281 Identities=20% Similarity=0.311 Sum_probs=249.5
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
.-.|..|.|.| +|+.|++|+..|.+.+|+... ......++.|..+|.++.|++++ .+++||+.+|.|++|+..
T Consensus 96 kc~V~~v~WtP--eGRRLltgs~SGEFtLWNg~~----fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpn 168 (464)
T KOG0284|consen 96 KCPVNVVRWTP--EGRRLLTGSQSGEFTLWNGTS----FNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPN 168 (464)
T ss_pred ccceeeEEEcC--CCceeEeecccccEEEecCce----eeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccc
Confidence 34799999999 999999999999999999875 45556678999999999999999 999999999999999998
Q ss_pred CCeEEEeecCC-CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380 314 KEVFDLVYSSE-YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTA 392 (536)
Q Consensus 314 ~~~~~~~~~~~-~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i 392 (536)
-.....+..|. ..|.+++|+|++ ..|++++.||+|+|||....+.-..+.+|.-.|.+++|||.. .++++||.|..|
T Consensus 169 mnnVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k-gLiasgskDnlV 246 (464)
T KOG0284|consen 169 MNNVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLV 246 (464)
T ss_pred hhhhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc-ceeEEccCCcee
Confidence 87777677665 899999999987 899999999999999999999888999999999999999976 699999999999
Q ss_pred EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe-ccCCCCceeeeeEEEEcC
Q 009380 393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH-HNNQTGRWISSFRAIWGW 471 (536)
Q Consensus 393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~ 471 (536)
++||.+++. .+..+..|+..|..+.|+|++++|+|+|.|..+++||+++.+.+..++ |.. .+ .++.|+|
T Consensus 247 KlWDprSg~----cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk----dv--~~~~WhP 316 (464)
T KOG0284|consen 247 KLWDPRSGS----CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK----DV--TSLTWHP 316 (464)
T ss_pred EeecCCCcc----hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh----hh--eeecccc
Confidence 999999975 566778999999999999999999999999999999999888887775 332 12 2367888
Q ss_pred C-CCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 472 D-DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 472 ~-g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
- ..+|.+|+.||.|..|.+...+++..+...|...+ .+++|||- |.+|++|+.|.++++|..
T Consensus 317 ~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~i-wsl~~hPl-Ghil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 317 LNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEI-WSLAYHPL-GHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccccceeeccCCCceEEEeccccccccCCCcccccce-eeeecccc-ceeEeecCCCcceeeecc
Confidence 4 56788999999999999997788888887777776 68999994 699999999999999964
No 15
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.6e-36 Score=274.00 Aligned_cols=294 Identities=18% Similarity=0.245 Sum_probs=249.1
Q ss_pred cccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEE
Q 009380 220 GSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIF 299 (536)
Q Consensus 220 w~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~ 299 (536)
|...++...++++|.+.|.|+++.| ...++++|+.|++|+|||+.+ +....++.+|-..|..+++++-. .||+
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP--~n~wf~tgs~DrtikIwDlat----g~LkltltGhi~~vr~vavS~rH-pYlF 209 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDP--GNEWFATGSADRTIKIWDLAT----GQLKLTLTGHIETVRGVAVSKRH-PYLF 209 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCC--CceeEEecCCCceeEEEEccc----CeEEEeecchhheeeeeeecccC-ceEE
Confidence 7777777889999999999999999 889999999999999999998 78889999999999999999998 9999
Q ss_pred EEECCCeEEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecC
Q 009380 300 TSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPR 378 (536)
Q Consensus 300 s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~ 378 (536)
+++.|+.|++||++..+++. .++|-..|.|++.+|.. ..|++|+.|.++++||+|+...+..+.+|..+|.++.+.|.
T Consensus 210 s~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT 288 (460)
T ss_pred EecCCCeeEEEechhhhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC
Confidence 99999999999999877654 55788999999999988 89999999999999999999999999999999999999998
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC
Q 009380 379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT 458 (536)
Q Consensus 379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~ 458 (536)
++ .+++||.|++|++||++.++ .......|...|.+++.+|....|++++.|+ |+-|++..+..+..+...+.
T Consensus 289 dp-qvit~S~D~tvrlWDl~agk----t~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~- 361 (460)
T KOG0285|consen 289 DP-QVITGSHDSTVRLWDLRAGK----TMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNA- 361 (460)
T ss_pred CC-ceEEecCCceEEEeeeccCc----eeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccc-
Confidence 86 68999999999999999975 6667778999999999999999999999876 99999988877766532222
Q ss_pred CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccC---C----ceeeeeeeEeecCCCCCEEEEEccCCeEE
Q 009380 459 GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS---P----YISAIPCRFHAHPHQVGTLAGATGGGQVY 531 (536)
Q Consensus 459 ~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~---~----~~~~~~~~~~~~p~~~~~lasgs~Dg~v~ 531 (536)
.+.. +.-.. ..++++|+.+|.+.+||..++-..+.++. + ....+ ...+|.- .+..|++|..|.+|+
T Consensus 362 --iint--l~~ns-D~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI-~as~fDk-tg~rlit~eadKtIk 434 (460)
T KOG0285|consen 362 --IINT--LSVNS-DGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGI-FASCFDK-TGSRLITGEADKTIK 434 (460)
T ss_pred --eeee--eeecc-CceEEEcCCceEEEEEecCcCcccccccccccCCccccccce-eEEeecc-cCceEEeccCCcceE
Confidence 2233 22233 44899999999999999998865554421 1 11112 2344544 358999999999999
Q ss_pred EEec
Q 009380 532 VWTS 535 (536)
Q Consensus 532 iW~~ 535 (536)
+|.-
T Consensus 435 ~~ke 438 (460)
T KOG0285|consen 435 MYKE 438 (460)
T ss_pred EEec
Confidence 9974
No 16
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.5e-36 Score=293.87 Aligned_cols=336 Identities=15% Similarity=0.194 Sum_probs=272.2
Q ss_pred eecc-cccceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCCccEEEEEe
Q 009380 178 VIKD-EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMVVAGS 255 (536)
Q Consensus 178 ~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l~tg~ 255 (536)
.++. |...|....|+|.+.+++ +++.||.+.+||+.... ...+++|++.|.++.|+|.....+|++|.
T Consensus 99 swKa~He~Pvi~ma~~~~g~LlA----------tggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~ 168 (775)
T KOG0319|consen 99 SWKAIHEAPVITMAFDPTGTLLA----------TGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGA 168 (775)
T ss_pred hHhhccCCCeEEEEEcCCCceEE----------eccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecC
Confidence 3455 999999999999997777 57999999999986554 34579999999999999966667799999
Q ss_pred CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe-------------------
Q 009380 256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV------------------- 316 (536)
Q Consensus 256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~------------------- 316 (536)
.|++|++||+.+. ..++..+..|...|++++|.+++ ..+++++.|..|.+||+.+.+
T Consensus 169 ~D~~v~vwnl~~~---~tcl~~~~~H~S~vtsL~~~~d~-~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~ 244 (775)
T KOG0319|consen 169 TDGTVRVWNLNDK---RTCLHTMILHKSAVTSLAFSEDS-LELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLRE 244 (775)
T ss_pred CCceEEEEEcccC---chHHHHHHhhhhheeeeeeccCC-ceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEech
Confidence 9999999999964 34788899999999999999998 888888888888888873210
Q ss_pred -------E------------------------------------------------------------------------
Q 009380 317 -------F------------------------------------------------------------------------ 317 (536)
Q Consensus 317 -------~------------------------------------------------------------------------ 317 (536)
.
T Consensus 245 ~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~nd 324 (775)
T KOG0319|consen 245 ELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYND 324 (775)
T ss_pred hcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCch
Confidence 0
Q ss_pred ----------------------------------EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc----c
Q 009380 318 ----------------------------------DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK----S 359 (536)
Q Consensus 318 ----------------------------------~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~----~ 359 (536)
..+.+|...|.+++...+| .+|++|+.|.++++|.++.+. +
T Consensus 325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~ 403 (775)
T KOG0319|consen 325 EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLC 403 (775)
T ss_pred hheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhh
Confidence 1122455567777744455 689999999999999885443 3
Q ss_pred ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc-c----eeecccCceeEEEEccCCCeEEEEeC
Q 009380 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP-M----KVLSHKRAVHSAYFSPSGSSLATTSF 434 (536)
Q Consensus 360 ~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~-~----~~~~~~~~v~~l~~sp~g~~l~t~s~ 434 (536)
+....+|...|.+|+++..+..+|+++|.|++|++|++...+.....+ + ....|...|++++++|+.++|+|||.
T Consensus 404 ~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq 483 (775)
T KOG0319|consen 404 VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ 483 (775)
T ss_pred hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc
Confidence 555679999999999998888899999999999999998833222211 1 22369999999999999999999999
Q ss_pred CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeec
Q 009380 435 DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAH 514 (536)
Q Consensus 435 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~ 514 (536)
|.+.+||++.+.....++..+ .+ ...++.|++..+.++++|.|.+|+||.+.+..++.+|.+|...+..+. |-
T Consensus 484 DktaKiW~le~~~l~~vLsGH---~R--Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~--F~ 556 (775)
T KOG0319|consen 484 DKTAKIWDLEQLRLLGVLSGH---TR--GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRAS--FI 556 (775)
T ss_pred ccceeeecccCceEEEEeeCC---cc--ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeee--ee
Confidence 999999999977666666422 22 234478999999999999999999999999999999999888777544 44
Q ss_pred CCCCCEEEEEccCCeEEEEecC
Q 009380 515 PHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 515 p~~~~~lasgs~Dg~v~iW~~d 536 (536)
. ++..|++++.||.|+||++.
T Consensus 557 ~-~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 557 R-NGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred e-CCcEEEeccCCCcEEEEecc
Confidence 3 46999999999999999974
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5e-37 Score=283.26 Aligned_cols=279 Identities=19% Similarity=0.249 Sum_probs=244.3
Q ss_pred cceeeeecCCCCcccccccccccccccccccceEEeccc-ccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEE
Q 009380 184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSL-TLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITF 262 (536)
Q Consensus 184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~-~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~i 262 (536)
..|..+.+.|+|+.|. ++...|.+.||+. .+.-+.+.+.|...|.++.|++ ++.++++|+.+|.|++
T Consensus 97 c~V~~v~WtPeGRRLl----------tgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~--~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLL----------TGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSH--NGTWMISGDKGGMIKY 164 (464)
T ss_pred cceeeEEEcCCCceeE----------eecccccEEEecCceeeHHHHhhhhcccceeEEEcc--CCCEEEEcCCCceEEe
Confidence 4678899999999888 4578889999996 3445677899999999999999 9999999999999999
Q ss_pred EECCCCCCCCCceEEeccCC-CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-EEeecCCCceeEEEecCCCCCEE
Q 009380 263 WNLDSQQDEDNGIYLFRTHL-GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-DLVYSSEYAVFSLSQQPNNVNTL 340 (536)
Q Consensus 263 wd~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-~~~~~~~~~i~~l~~~~~~~~~l 340 (536)
|+.. ...+..++.|. ..|.+++|+|+. ..|++||.||+|+|||....+. ..+.+|.-.|.+++|+|.. .+|
T Consensus 165 Wqpn-----mnnVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k-gLi 237 (464)
T KOG0284|consen 165 WQPN-----MNNVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK-GLI 237 (464)
T ss_pred cccc-----hhhhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc-cee
Confidence 9988 45566666665 899999999987 9999999999999999876544 3456899999999999997 799
Q ss_pred EEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEE
Q 009380 341 YFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSA 420 (536)
Q Consensus 341 ~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l 420 (536)
++|+.|..|++||.+++.++.++..|...|..+.|+|++ ++|+|+|.|..++++|+|+.+ .+....+|...|+++
T Consensus 238 asgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mk----El~~~r~Hkkdv~~~ 312 (464)
T KOG0284|consen 238 ASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMK----ELFTYRGHKKDVTSL 312 (464)
T ss_pred EEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhH----HHHHhhcchhhheee
Confidence 999999999999999999999999999999999999988 899999999999999999754 677777999999999
Q ss_pred EEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380 421 YFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 421 ~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
.|+| ...+|.+|+.||.|..|.+...+++..+...... .+..++|+|-|.+|++|+.|+++++|..
T Consensus 313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~----~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG----EIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccccccccceeeccCCCceEEEeccccccccCCCccccc----ceeeeeccccceeEeecCCCcceeeecc
Confidence 9999 7788999999999999999866666666443322 3334779999999999999999999975
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=285.55 Aligned_cols=298 Identities=17% Similarity=0.270 Sum_probs=245.1
Q ss_pred ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcccc-ccccCCceEEEEEEecCCccEEEE
Q 009380 175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENI-ARIMPGRITQMKFLPCSDVRMVVA 253 (536)
Q Consensus 175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~-~~~~~~~I~~v~~~p~~~~~~l~t 253 (536)
+..-+.--...|..+.|+..|..+|-. ++.=|.+-+|++..+.... .++|..+|++++++| ||.+|||
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g---------~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSp--Dgq~iaT 367 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFG---------CSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSP--DGQLIAT 367 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEc---------CCccceEEEEEeeccceeeeccccccceeeEEECC--CCcEEEe
Confidence 333344444566677777778877743 3334789999986654432 477999999999999 9999999
Q ss_pred EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC--CceeEEE
Q 009380 254 GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE--YAVFSLS 331 (536)
Q Consensus 254 g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~--~~i~~l~ 331 (536)
|+.||.|+|||... +-+..+|..|+..|+.+.|+..+ +.++++|-||+|+.||+.....-..+... ....|++
T Consensus 368 G~eDgKVKvWn~~S----gfC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscva 442 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQS----GFCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVA 442 (893)
T ss_pred ccCCCcEEEEeccC----ceEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEE
Confidence 99999999999998 78999999999999999999999 99999999999999999988766666544 4567888
Q ss_pred ecCCCCCEEEEEECCC-eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee
Q 009380 332 QQPNNVNTLYFGEGQG-GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV 410 (536)
Q Consensus 332 ~~~~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~ 410 (536)
..|.| .++++|+.|. .|.+|++.+|+.+..+.+|.++|.+++|+|++ ..|+++|.|.+|++||+-... .....
T Consensus 443 vD~sG-elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~----~~vEt 516 (893)
T KOG0291|consen 443 VDPSG-ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSS----GTVET 516 (893)
T ss_pred EcCCC-CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccC----ceeee
Confidence 88888 6888888774 69999999999999999999999999999988 699999999999999987632 45566
Q ss_pred ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe-----------------ccCCCCceeeeeEEEEcCCC
Q 009380 411 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH-----------------HNNQTGRWISSFRAIWGWDD 473 (536)
Q Consensus 411 ~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~s~~g 473 (536)
..+...+..++|+|+|+.|++++.||.|.+||.........+. .+...+...+. +++++||
T Consensus 517 l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftt--i~ySaDG 594 (893)
T KOG0291|consen 517 LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTT--ICYSADG 594 (893)
T ss_pred EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEE--EEEcCCC
Confidence 7788999999999999999999999999999987655443332 11122233333 6799999
Q ss_pred CEEEEEcCCCcEEEEcCCccccc
Q 009380 474 SCVFIGNMTRTVEVISPAQRRSV 496 (536)
Q Consensus 474 ~~l~~gs~dg~I~v~d~~~~~~~ 496 (536)
.+|++|+..+.|++|++.++-++
T Consensus 595 ~~IlAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 595 KCILAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred CEEEecCCcccEEEEECchhhee
Confidence 99999999999999999876443
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-35 Score=289.59 Aligned_cols=337 Identities=17% Similarity=0.162 Sum_probs=277.8
Q ss_pred cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc--cccccccCCceEEEEEEecCCccEE
Q 009380 174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP--ENIARIMPGRITQMKFLPCSDVRMV 251 (536)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~--~~~~~~~~~~I~~v~~~p~~~~~~l 251 (536)
+.-..++||..-|..+.|.|+..... +..+..|+.+++||+.... ....+.|...|++++|++ |+.-+
T Consensus 138 ~~th~fkG~gGvVssl~F~~~~~~~l--------L~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ 207 (775)
T KOG0319|consen 138 YCTHSFKGHGGVVSSLLFHPHWNRWL--------LASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLEL 207 (775)
T ss_pred EEEEEecCCCceEEEEEeCCccchhh--------eeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceE
Confidence 44457899999999999999987622 1257899999999986332 355688999999999999 88888
Q ss_pred EEEeCCCcEEEEECCCC---------------------------------------------------------------
Q 009380 252 VAGSKLGNITFWNLDSQ--------------------------------------------------------------- 268 (536)
Q Consensus 252 ~tg~~dg~v~iwd~~~~--------------------------------------------------------------- 268 (536)
++++.|..+.|||+.+.
T Consensus 208 ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~ 287 (775)
T KOG0319|consen 208 LSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHL 287 (775)
T ss_pred EEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcc
Confidence 88888888888887500
Q ss_pred ----------------------------------------------CC------------------CCCceEEeccCCCC
Q 009380 269 ----------------------------------------------QD------------------EDNGIYLFRTHLGP 284 (536)
Q Consensus 269 ----------------------------------------------~~------------------~~~~~~~~~~h~~~ 284 (536)
.. .......+.+|+..
T Consensus 288 ~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~ 367 (775)
T KOG0319|consen 288 LAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEA 367 (775)
T ss_pred eeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhh
Confidence 00 00111235678889
Q ss_pred EEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-----EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc
Q 009380 285 ISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-----DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359 (536)
Q Consensus 285 V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-----~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~ 359 (536)
|.++....+| .+|+|||.|.++++|.++++.. ....+|...|.+++++..+..+|++++.|+++++|++...+.
T Consensus 368 vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~ 446 (775)
T KOG0319|consen 368 VLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE 446 (775)
T ss_pred eeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccc
Confidence 9999865666 8999999999999999865432 233479999999999999989999999999999999986221
Q ss_pred ---------ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEE
Q 009380 360 ---------ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLA 430 (536)
Q Consensus 360 ---------~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 430 (536)
..+...|...|+|++.+|.+ .++||||.|.+.+||++..+ .....+.+|+..|+++.|+|..+.++
T Consensus 447 ~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~----~l~~vLsGH~RGvw~V~Fs~~dq~la 521 (775)
T KOG0319|consen 447 TAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQL----RLLGVLSGHTRGVWCVSFSKNDQLLA 521 (775)
T ss_pred ccccceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCc----eEEEEeeCCccceEEEEeccccceeE
Confidence 12234799999999999966 79999999999999999964 25556669999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeee
Q 009380 431 TTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCR 510 (536)
Q Consensus 431 t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~ 510 (536)
|+|.|.+|+||.+.++.++.++.. +...++++.|-.+|..|++++.||-|++|++.+++++.++..|...+. +
T Consensus 522 T~SgD~TvKIW~is~fSClkT~eG-----H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW--a 594 (775)
T KOG0319|consen 522 TCSGDKTVKIWSISTFSCLKTFEG-----HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW--A 594 (775)
T ss_pred eccCCceEEEEEeccceeeeeecC-----ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE--E
Confidence 999999999999999999999852 223678899999999999999999999999999999999999887766 6
Q ss_pred EeecCCCCCEEEEEccCCeEEEEe
Q 009380 511 FHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 511 ~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
++.+|. ..++++|+.||.|.+|.
T Consensus 595 L~~~~~-~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 595 LSVSPL-LDMFVTGGGDGRIIFWK 617 (775)
T ss_pred EeecCc-cceeEecCCCeEEEEee
Confidence 777774 47999999999999995
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=251.32 Aligned_cols=273 Identities=16% Similarity=0.221 Sum_probs=222.6
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE---EEeecCCC
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF---DLVYSSEY 325 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~---~~~~~~~~ 325 (536)
-+|++++.|.+|++|...+ +.+..+++...+.|+.+...|++ ..|++++. -.|++||++++.. ..+.+|..
T Consensus 11 viLvsA~YDhTIRfWqa~t----G~C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALT----GICSRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred eEEEeccCcceeeeeehhc----CeEEEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEccCCCCCceeEEeccCC
Confidence 5899999999999999998 89999999888999999999998 88888874 5699999998643 44557889
Q ss_pred ceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 009380 326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405 (536)
Q Consensus 326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~ 405 (536)
.|+++.|..+| +.+++|+.||+++|||+|...+.+.++ |..+|++|..+|.. ..|++|..+|.|++||++...+.
T Consensus 85 NVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~-- 159 (311)
T KOG0315|consen 85 NVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCT-- 159 (311)
T ss_pred ceEEEEEeecC-eEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCccc--
Confidence 99999999998 899999999999999999977666665 78999999999965 68999999999999999985321
Q ss_pred CcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe-ccCCCCceeeeeEEEEcCCCCEEEEEcCCCc
Q 009380 406 EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH-HNNQTGRWISSFRAIWGWDDSCVFIGNMTRT 484 (536)
Q Consensus 406 ~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~ 484 (536)
...+..-...|.++...|+|.+++.+...|..++|++-+......+. ......+.-..+++.+|||+++|++++.|.+
T Consensus 160 -~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt 238 (311)
T KOG0315|consen 160 -HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT 238 (311)
T ss_pred -cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce
Confidence 11122345789999999999999999999999999987644332221 1111111224566889999999999999999
Q ss_pred EEEEcCCcc-ccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 485 VEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 485 I~v~d~~~~-~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
++||+.++. +.-..+.+|..-...| .|+. |+.+|++|+.|+.+++|++.
T Consensus 239 v~iwn~~~~~kle~~l~gh~rWvWdc--~FS~-dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 239 VKIWNTDDFFKLELVLTGHQRWVWDC--AFSA-DGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred EEEEecCCceeeEEEeecCCceEEee--eecc-CccEEEecCCCCceeecccc
Confidence 999999988 4445667766556545 4444 78999999999999999974
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.5e-34 Score=271.00 Aligned_cols=339 Identities=13% Similarity=0.165 Sum_probs=268.6
Q ss_pred ccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccc-c---ccccCCceEEEEEEecCCc
Q 009380 173 ENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-I---ARIMPGRITQMKFLPCSDV 248 (536)
Q Consensus 173 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-~---~~~~~~~I~~v~~~p~~~~ 248 (536)
|.++..+..|..=|.|+.|+|||..++ +.+.||++.|||-...+.. . ...|.+.|+++.|+| |+
T Consensus 180 FKFk~s~r~HskFV~~VRysPDG~~Fa----------t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP--Ds 247 (603)
T KOG0318|consen 180 FKFKSSFREHSKFVNCVRYSPDGSRFA----------TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP--DS 247 (603)
T ss_pred eeeeecccccccceeeEEECCCCCeEE----------EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC--CC
Confidence 456677788999999999999999999 4589999999996443321 1 247999999999999 99
Q ss_pred cEEEEEeCCCcEEEEECCCCCC---------------------------------------CCCceEEeccCCCCEEEEE
Q 009380 249 RMVVAGSKLGNITFWNLDSQQD---------------------------------------EDNGIYLFRTHLGPISGIV 289 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~---------------------------------------~~~~~~~~~~h~~~V~~l~ 289 (536)
..+++++.|.+++|||+.+... ....+..+.+|...|+++.
T Consensus 248 ~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLt 327 (603)
T KOG0318|consen 248 TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALT 327 (603)
T ss_pred ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEE
Confidence 9999999999999999874210 1234456779999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEECCCCeEEEe--ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc--------
Q 009380 290 TQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV--YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-------- 359 (536)
Q Consensus 290 ~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~--~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-------- 359 (536)
.++++ .+|++|++||.|.-|+..++....+ ..|...|.+++.+..+ .+++.+.|.+|++.++.....
T Consensus 328 v~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l 404 (603)
T KOG0318|consen 328 VSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKL 404 (603)
T ss_pred EcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeec
Confidence 99999 9999999999999999999887766 4688999999998765 578888888999997743210
Q ss_pred -----------------------ceeEecc--------CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc
Q 009380 360 -----------------------ATEWLLH--------EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM 408 (536)
Q Consensus 360 -----------------------~~~~~~h--------~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~ 408 (536)
+..++.+ .-...+++++|++ ..++.|+.||.|+||.+..... ....
T Consensus 405 g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l--~ee~ 481 (603)
T KOG0318|consen 405 GSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDEL--KEEA 481 (603)
T ss_pred CCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcc--ccee
Confidence 0011111 1235688999977 7999999999999999987542 2334
Q ss_pred eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380 409 KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488 (536)
Q Consensus 409 ~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~ 488 (536)
....|.+.|++++||||+.+|++|...+.+.+||+.+.+..... . .-+...+.+++|+|+..+||+|+.|-.|.||
T Consensus 482 ~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~-w---~FHtakI~~~aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 482 KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR-W---AFHTAKINCVAWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce-e---eeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence 55689999999999999999999999999999999887652211 1 1111234558999999999999999999999
Q ss_pred cCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 489 SPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 489 d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
++........+++.|...+ ..+.|- +...|++.+.|..|++|++.
T Consensus 558 sv~kP~~~i~iknAH~~gV-n~v~wl--de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 558 SVKKPAKHIIIKNAHLGGV-NSVAWL--DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EccChhhheEeccccccCc-eeEEEe--cCceEEeccCcceeEEeccc
Confidence 9988766666666565554 567776 45899999999999999873
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=293.91 Aligned_cols=293 Identities=23% Similarity=0.340 Sum_probs=246.4
Q ss_pred cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM 310 (536)
Q Consensus 231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw 310 (536)
..+...|+++.|+| +|.++++++.++.+++|++..... .....+.+|...|.+++|+|++ .++++++.|++|++|
T Consensus 156 ~~~~~sv~~~~fs~--~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 156 GHECPSVTCVDFSP--DGRALAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIW 230 (456)
T ss_pred ccccCceEEEEEcC--CCCeEEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCC-cEEEEecCCceEEEe
Confidence 44578999999999 999999999999999999965210 2566678999999999999999 899999999999999
Q ss_pred ECC-CCeE-EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC
Q 009380 311 DAE-KEVF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST 388 (536)
Q Consensus 311 d~~-~~~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~ 388 (536)
|+. .+.. ..+.+|...|++++|+|++ +++++|+.|++|+|||+++++++..+.+|.+.|++++|++++ ++|++++.
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~-~~l~s~s~ 308 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDG-NLLVSASY 308 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCC-CEEEEcCC
Confidence 994 4344 4556899999999999999 999999999999999999999999999999999999999988 79999999
Q ss_pred CCcEEEEeCCCCCCCCCCcceeecccC--ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeE
Q 009380 389 DGTACIWDLRSMATDKPEPMKVLSHKR--AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFR 466 (536)
Q Consensus 389 dg~i~iwdl~~~~~~~~~~~~~~~~~~--~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 466 (536)
|+.|+|||+.++... ....+..+.. .++++.|+|++.+|++++.|+.+++||+..+.....+....... ...+.
T Consensus 309 d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~--~~~~~ 384 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLV--RCIFS 384 (456)
T ss_pred CccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcc--eeEec
Confidence 999999999986411 1122233333 59999999999999999999999999999888877774332221 23334
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEc--cCCeEEEEecC
Q 009380 467 AIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT--GGGQVYVWTSD 536 (536)
Q Consensus 467 ~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs--~Dg~v~iW~~d 536 (536)
...++.+.++++|+.|+.|++|+..++..+..+.+|.... ...+.+||. .+++++++ .|+.|++|..+
T Consensus 385 ~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~-~~~~~~~~~-~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 385 PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAA-VSDLSSHPT-ENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCc-eeccccCCC-cCeeeecCcCCCceEEEecCC
Confidence 5568899999999999999999999999999999874333 357888985 48999988 79999999754
No 23
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-35 Score=270.85 Aligned_cols=295 Identities=15% Similarity=0.201 Sum_probs=248.7
Q ss_pred cCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC
Q 009380 224 LKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY 303 (536)
Q Consensus 224 ~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~ 303 (536)
.....++..|.+.|+-+.|++ +|++||++++|.+..+|.+..... .+..+++.+|..+|..+.|+||. ++|++|+.
T Consensus 214 ~qt~qil~~htdEVWfl~FS~--nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~ 289 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSH--NGKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDD-RYLLACGF 289 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcC--CCeeEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCC-CeEEecCc
Confidence 344567788999999999999 999999999999999999876432 56678999999999999999999 99999999
Q ss_pred CCeEEEEECCCCeEEEeecCC--CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC-CCeEEEEEecCCC
Q 009380 304 DGLIRLMDAEKEVFDLVYSSE--YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE-ARINTIDFNPRNP 380 (536)
Q Consensus 304 dg~I~vwd~~~~~~~~~~~~~--~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-~~i~~i~~~p~~~ 380 (536)
|..+.+||+.+|.....+.+. ..+.+++|.|++ ..+++|+.|+++..||+. |..+..+++-. ..|.+++..+||
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dg- 366 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDG- 366 (519)
T ss_pred hHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCC-
Confidence 999999999999988888765 789999999999 789999999999999985 55566776443 569999999998
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCc
Q 009380 381 NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGR 460 (536)
Q Consensus 381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 460 (536)
.++++.+.|..|++++..+. ..........+|++++.|.+++++++.-.+..|++||+.....+..+....+ +
T Consensus 367 k~vl~v~~d~~i~l~~~e~~-----~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq-~- 439 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREAR-----VDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ-G- 439 (519)
T ss_pred cEEEEEecccceeeechhhh-----hhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc-c-
Confidence 57777778999999998873 2233455678999999999999999999999999999997766665533222 2
Q ss_pred eeeeeEEEEcC-CCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 461 WISSFRAIWGW-DDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 461 ~~~~~~~~~s~-~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
...++.+|.. +..++++|+.|+.|+||+..+++++..+.+|...+. .++|+|.+..++|+||+||+|+||..
T Consensus 440 -~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vN--cVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 440 -HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVN--CVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred -ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceee--EEecCCCCHHHhhccCCCCeEEEecC
Confidence 2334456654 458999999999999999999999999999775544 68999999999999999999999975
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.1e-35 Score=265.54 Aligned_cols=289 Identities=16% Similarity=0.205 Sum_probs=254.8
Q ss_pred ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC
Q 009380 226 PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG 305 (536)
Q Consensus 226 ~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg 305 (536)
......+|..+|+.+-|+| +-.++++++.|++|++||..+ +.....+++|...|..|.|+..| .+|++|+.|-
T Consensus 100 l~~~l~g~r~~vt~v~~hp--~~~~v~~as~d~tikv~D~~t----g~~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl 172 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHP--SEALVVSASEDATIKVFDTET----GELERSLRGHTDSVFDISFDASG-KYLATCSSDL 172 (406)
T ss_pred chhhhhccccceeeeeecc--CceEEEEecCCceEEEEEccc----hhhhhhhhccccceeEEEEecCc-cEEEecCCcc
Confidence 3444567899999999999 889999999999999999998 67789999999999999999999 9999999999
Q ss_pred eEEEEECCCC--eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEE
Q 009380 306 LIRLMDAEKE--VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIM 383 (536)
Q Consensus 306 ~I~vwd~~~~--~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l 383 (536)
.+.+||..+. .+....+|+..|.+++|-|.+ +++++++.|.+|+.|++.++-+++++.+|...|..+..+.|| .++
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG-ti~ 250 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG-TII 250 (406)
T ss_pred chhheeHHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCe-eEE
Confidence 9999999873 445667899999999999998 899999999999999999999999999999999999999988 799
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC---------------CCeEEEEeCCCcEEEEeCCCCCc
Q 009380 384 ATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS---------------GSSLATTSFDDTIGIWSGVNFEN 448 (536)
Q Consensus 384 ~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~---------------g~~l~t~s~dg~I~iwd~~~~~~ 448 (536)
++++.|.+|++|-+.+.+ ....+..|..+|-+++|.|. +.++.+++.|++|++||+.++.+
T Consensus 251 As~s~dqtl~vW~~~t~~----~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c 326 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQ----CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC 326 (406)
T ss_pred EecCCCceEEEEEeccch----hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE
Confidence 999999999999998853 33455689999999999773 25899999999999999999998
Q ss_pred ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCC
Q 009380 449 TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG 528 (536)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg 528 (536)
+.++.. ...|+.. ++|+|.|+||+++..|++++|||+.+++++..+..|..-+ ..+.||-+ ..++++|+-|.
T Consensus 327 L~tL~g---hdnwVr~--~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfv--t~lDfh~~-~p~VvTGsVdq 398 (406)
T KOG0295|consen 327 LFTLVG---HDNWVRG--VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFV--TSLDFHKT-APYVVTGSVDQ 398 (406)
T ss_pred EEEEec---ccceeee--eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCccee--EEEecCCC-CceEEeccccc
Confidence 888853 2336665 7799999999999999999999999999999998655444 46788764 47999999999
Q ss_pred eEEEEec
Q 009380 529 QVYVWTS 535 (536)
Q Consensus 529 ~v~iW~~ 535 (536)
.+++|..
T Consensus 399 t~KvwEc 405 (406)
T KOG0295|consen 399 TVKVWEC 405 (406)
T ss_pred eeeeeec
Confidence 9999974
No 25
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.4e-34 Score=248.81 Aligned_cols=291 Identities=15% Similarity=0.215 Sum_probs=231.8
Q ss_pred cccccccCCceEEEEEEecCC-ccEEEEEeCCCcEEEEECCCCCCCCCceEEe-ccCCCCEEEEEEecCCCCEEEEEECC
Q 009380 227 ENIARIMPGRITQMKFLPCSD-VRMVVAGSKLGNITFWNLDSQQDEDNGIYLF-RTHLGPISGIVTQQYCLSKIFTSCYD 304 (536)
Q Consensus 227 ~~~~~~~~~~I~~v~~~p~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~l~s~s~d 304 (536)
....++|.++|..++|+| . |.+||+|+.|..|+||+..... ...+...+ .+|+..|.+++|+|.| ++|+++|.|
T Consensus 7 ~~~~~gh~~r~W~~awhp--~~g~ilAscg~Dk~vriw~~~~~~-s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD 82 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHP--GKGVILASCGTDKAVRIWSTSSGD-SWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFD 82 (312)
T ss_pred EEeecCCCCcEEEEEecc--CCceEEEeecCCceEEEEecCCCC-cEEEEEeccccchheeeeeeecCCC-cEEEEeecc
Confidence 344688999999999999 5 7899999999999999998521 12333333 4799999999999999 999999999
Q ss_pred CeEEEEECCCCeE---EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC---ccceeEeccCCCeEEEEEecC
Q 009380 305 GLIRLMDAEKEVF---DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR---KSATEWLLHEARINTIDFNPR 378 (536)
Q Consensus 305 g~I~vwd~~~~~~---~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~---~~~~~~~~h~~~i~~i~~~p~ 378 (536)
.++.||.-..+.+ ..+.+|+..|.|++|+++| ++|++++.|..|-||.+..+ .++..++.|...|..+.|||.
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 9999998877654 3456899999999999999 89999999999999998754 457788899999999999997
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC
Q 009380 379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT 458 (536)
Q Consensus 379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~ 458 (536)
. .+|+++|.|.+|++|+-... ..-.....+.+|...|.+++|++.|..|++++.|++++||-..+ .+.+ ..
T Consensus 162 ~-dlL~S~SYDnTIk~~~~~~d-ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~--~~ 232 (312)
T KOG0645|consen 162 E-DLLFSCSYDNTIKVYRDEDD-DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSG--MH 232 (312)
T ss_pred c-ceeEEeccCCeEEEEeecCC-CCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Ccch--hc
Confidence 6 69999999999999987632 11234556668999999999999999999999999999998642 1111 11
Q ss_pred CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc------ccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEE
Q 009380 459 GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR------RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 532 (536)
Q Consensus 459 ~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~------~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~i 532 (536)
.+.+. .+.|. ...|++++.|+.|++|..... +.+....+.|...+ .++.|.|.-.+.|++|+.||.|++
T Consensus 233 sr~~Y--~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dV-NsV~w~p~~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 233 SRALY--DVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDV-NSVQWNPKVSNRLASGGDDGIVNF 307 (312)
T ss_pred ccceE--eeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccccc-ceEEEcCCCCCceeecCCCceEEE
Confidence 12222 25576 458999999999999976542 23343444454444 578999965689999999999999
Q ss_pred EecC
Q 009380 533 WTSD 536 (536)
Q Consensus 533 W~~d 536 (536)
|.++
T Consensus 308 W~l~ 311 (312)
T KOG0645|consen 308 WELE 311 (312)
T ss_pred EEec
Confidence 9874
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.9e-35 Score=291.54 Aligned_cols=249 Identities=21% Similarity=0.304 Sum_probs=219.2
Q ss_pred cceecccccceeeeecCCCCcccccccccccccccccccceEEeccccc-------------------------------
Q 009380 176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL------------------------------- 224 (536)
Q Consensus 176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~------------------------------- 224 (536)
.+++.-....+.|+.|++|+..+|.. =.|..|++|.+..
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~G----------f~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~ 440 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACG----------FVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDS 440 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhcc----------ccccEEEEEecchhhhccccchhhhccccccccchhhhhccccC
Confidence 45555666899999999999988833 2334555554431
Q ss_pred -CccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC
Q 009380 225 -KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY 303 (536)
Q Consensus 225 -~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~ 303 (536)
.....+.+|.++|+.+.|+| +.++|++++.|++|++|.+.+ ..++-.+++|..+|+++.|+|.| -+|+|||.
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsP--d~rfLlScSED~svRLWsl~t----~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~ 513 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSP--DRRFLLSCSEDSSVRLWSLDT----WSCLVIYKGHLAPVWDVQFAPRG-YYFATASH 513 (707)
T ss_pred CceeEEeecCCCceeeeeecc--cccceeeccCCcceeeeeccc----ceeEEEecCCCcceeeEEecCCc-eEEEecCC
Confidence 01123568999999999999 999999999999999999998 78999999999999999999999 99999999
Q ss_pred CCeEEEEECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCE
Q 009380 304 DGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNI 382 (536)
Q Consensus 304 dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~ 382 (536)
|++-++|.........+ .+|-..|.|+.|+|+. +++++|+.|.+|++||+.+|..++.|.+|.++|.+++|+|+| .+
T Consensus 514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~G-r~ 591 (707)
T KOG0263|consen 514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCG-RY 591 (707)
T ss_pred CceeeeeecccCCchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCC-ce
Confidence 99999999987665554 4788999999999998 999999999999999999999999999999999999999987 89
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 009380 383 MATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE 447 (536)
Q Consensus 383 l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~ 447 (536)
|++|+.||.|++||+.++. .+..+.+|.+.|.++.|+.+|..|++|+.|++|++||+....
T Consensus 592 LaSg~ed~~I~iWDl~~~~----~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGS----LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EeecccCCcEEEEEcCCCc----chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 9999999999999999964 667778999999999999999999999999999999986543
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.6e-34 Score=268.93 Aligned_cols=280 Identities=20% Similarity=0.247 Sum_probs=249.8
Q ss_pred ccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEE
Q 009380 183 FNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITF 262 (536)
Q Consensus 183 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~i 262 (536)
...|.++.++.+|..|+ ++..+|.+++|+........+..|.++|.++.|+. .|+||++++.||++.+
T Consensus 235 nkdVT~L~Wn~~G~~La----------tG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk--~G~yilS~~vD~ttil 302 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLA----------TGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNK--KGTYILSGGVDGTTIL 302 (524)
T ss_pred cCCcceEEecCCCCeEE----------EeecCcEEEEEecCchhhhhhhccCCceEEEEEcC--CCCEEEeccCCccEEE
Confidence 36899999999999999 55899999999998888888899999999999999 9999999999999999
Q ss_pred EECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-EEeecCCCceeEEEecCCCCCEEE
Q 009380 263 WNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-DLVYSSEYAVFSLSQQPNNVNTLY 341 (536)
Q Consensus 263 wd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-~~~~~~~~~i~~l~~~~~~~~~l~ 341 (536)
||..+ +.....+.-|..+-..+.|-.+ ..|++++.|+.|+|+.+....+ ..+.+|.+.|.++.|.|.+ .+|+
T Consensus 303 wd~~~----g~~~q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg-~LLa 375 (524)
T KOG0273|consen 303 WDAHT----GTVKQQFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG-SLLA 375 (524)
T ss_pred EeccC----ceEEEeeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC-ceEE
Confidence 99987 6777788889888788999866 6899999999999999976544 4566799999999999999 8999
Q ss_pred EEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCC--------CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc
Q 009380 342 FGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNP--------NIMATSSTDGTACIWDLRSMATDKPEPMKVLSH 413 (536)
Q Consensus 342 ~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~--------~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~ 413 (536)
+++.|++++||.+........+..|...|..+.|+|.|+ ..+++++.|++|++||+..+. .+..+..|
T Consensus 376 S~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv----~i~~f~kH 451 (524)
T KOG0273|consen 376 SCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV----PIHTLMKH 451 (524)
T ss_pred EecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc----eeEeeccC
Confidence 999999999999999999999999999999999999763 479999999999999999864 55556699
Q ss_pred cCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380 414 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA 491 (536)
Q Consensus 414 ~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~ 491 (536)
..+|++++|+|+|.|+++|+.||.|.||+.++++..+.+.... .++.++|+.+|.+|.++-.|+.+++.|+.
T Consensus 452 ~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~------~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 452 QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG------GIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC------eEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999999999999999999988887774433 25568899999999999999999998864
No 28
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8.6e-34 Score=258.69 Aligned_cols=331 Identities=11% Similarity=0.102 Sum_probs=271.6
Q ss_pred ceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccc-cccccCCceEEEEEEecCCccEEEEEe
Q 009380 177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-IARIMPGRITQMKFLPCSDVRMVVAGS 255 (536)
Q Consensus 177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-~~~~~~~~I~~v~~~p~~~~~~l~tg~ 255 (536)
..+..|.+.|.+|..+|+..+++ +++.|....||++...+.. .+.+|.+.|+++.|+. +|.+||||+
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~a----------TGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh--dgtlLATGd 125 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVA----------TGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH--DGTLLATGD 125 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEE----------ecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc--CceEEEecC
Confidence 35788999999999999777777 5678889999998766533 3578999999999999 999999999
Q ss_pred CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-CeEEEeecCCCceeEEEecC
Q 009380 256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-EVFDLVYSSEYAVFSLSQQP 334 (536)
Q Consensus 256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-~~~~~~~~~~~~i~~l~~~~ 334 (536)
.+|.|+||...+ +.....+...-..|.-+.|+|.+ ..|+.|+.||.|.+|.+.+ +.+..+.+|..++++=.|.|
T Consensus 126 msG~v~v~~~st----g~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p 200 (399)
T KOG0296|consen 126 MSGKVLVFKVST----GGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP 200 (399)
T ss_pred CCccEEEEEccc----CceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC
Confidence 999999999998 45555555556678889999988 9999999999999999998 56677778999999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCccceeEecc-CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC----CCcce
Q 009380 335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH-EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK----PEPMK 409 (536)
Q Consensus 335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h-~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~----~~~~~ 409 (536)
+| ..++++..||+|++||+.+++++..+... .....++.++..+ ..+++|+.++.+++-...+++... ..+..
T Consensus 201 dG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l 278 (399)
T KOG0296|consen 201 DG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGKVVNCNNGTVPEL 278 (399)
T ss_pred CC-ceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccc-ceeEeccCCccEEEEccccceEEEecCCCCccc
Confidence 98 89999999999999999999998887632 3456788888766 688999999999888877764211 11222
Q ss_pred eecccCceeEEEEcc---CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEE
Q 009380 410 VLSHKRAVHSAYFSP---SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVE 486 (536)
Q Consensus 410 ~~~~~~~v~~l~~sp---~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~ 486 (536)
...+...+.++.+.| .-.+.|+|+.||+|.|||+......+...|... ++++.|-+ ..+|++++.||.|+
T Consensus 279 ~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~------V~~l~w~~-t~~l~t~c~~g~v~ 351 (399)
T KOG0296|consen 279 KPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG------VTKLKWLN-TDYLLTACANGKVR 351 (399)
T ss_pred cccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc------eEEEEEcC-cchheeeccCceEE
Confidence 224555555655555 556889999999999999998887777766543 44577887 67999999999999
Q ss_pred EEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 487 VISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 487 v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
.||.++|+++.++.+|...+. .|+.+| +.+.++++|.|++.+||++.
T Consensus 352 ~wDaRtG~l~~~y~GH~~~Il--~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 352 QWDARTGQLKFTYTGHQMGIL--DFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeeccccceEEEEecCchhee--EEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999999877765 677778 56999999999999999863
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-33 Score=275.37 Aligned_cols=340 Identities=15% Similarity=0.159 Sum_probs=283.3
Q ss_pred cccccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc---ccccccCCceEEEEEEecC
Q 009380 170 CKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE---NIARIMPGRITQMKFLPCS 246 (536)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~---~~~~~~~~~I~~v~~~p~~ 246 (536)
...|.+..++.||.+.|.++.|+.|.+.+. +++.|-.++||.+..... ..+.+|.+.|..+-|..
T Consensus 132 ~~pFvl~r~~~g~fddi~si~Ws~DSr~l~----------~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~-- 199 (893)
T KOG0291|consen 132 FNPFVLHRTYLGHFDDITSIDWSDDSRLLV----------TGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA-- 199 (893)
T ss_pred cCcceEeeeecCCccceeEEEeccCCceEE----------eccccceEEEEEeccccccceEeccCCCcceEEEEecc--
Confidence 346788899999999999999999999998 457778899998754333 34678999999999999
Q ss_pred CccEEEEEeCCCcEEEEECCCCCC-------------------CCCc-----------eEEeccCCCCEEEEEEecCCCC
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQD-------------------EDNG-----------IYLFRTHLGPISGIVTQQYCLS 296 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~-------------------~~~~-----------~~~~~~h~~~V~~l~~~~~~~~ 296 (536)
+..-+.+-++||.+.+|....... .++. .+-+......|++.+|++.. +
T Consensus 200 ~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t-~ 278 (893)
T KOG0291|consen 200 NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT-N 278 (893)
T ss_pred CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc-e
Confidence 888899999999999998872100 0011 11122233679999999987 9
Q ss_pred EEEEEECCCeEEEEECCCCeEEEeec-CCCceeEEEecCCCCCEEEEEECC-CeEEEEECCCCccceeEeccCCCeEEEE
Q 009380 297 KIFTSCYDGLIRLMDAEKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQ-GGLNIWDVRSRKSATEWLLHEARINTID 374 (536)
Q Consensus 297 ~l~s~s~dg~I~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~d-g~i~i~d~~~~~~~~~~~~h~~~i~~i~ 374 (536)
.|+++-..|...+|.+..-.++.... .+.+|..+.|+..| ..|+.|+.. |.+.+|+.++...+...++|...+++++
T Consensus 279 ~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~ 357 (893)
T KOG0291|consen 279 LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLA 357 (893)
T ss_pred EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC-CEEEEcCCccceEEEEEeeccceeeeccccccceeeEE
Confidence 99999999999999999877766555 45899999999998 788888765 8999999999988889999999999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEec
Q 009380 375 FNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHH 454 (536)
Q Consensus 375 ~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~ 454 (536)
++||| +++|||+.||.|+|||...+- ....+..|...|+.+.|+..|+.+++.|.||+|+.||+....+.+++..
T Consensus 358 YSpDg-q~iaTG~eDgKVKvWn~~Sgf----C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~ 432 (893)
T KOG0291|consen 358 YSPDG-QLIATGAEDGKVKVWNTQSGF----CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS 432 (893)
T ss_pred ECCCC-cEEEeccCCCcEEEEeccCce----EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC
Confidence 99998 799999999999999999853 4555668999999999999999999999999999999999888888854
Q ss_pred cCCCCceeeeeEEEEcCCCCEEEEEcCCC-cEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380 455 NNQTGRWISSFRAIWGWDDSCVFIGNMTR-TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533 (536)
Q Consensus 455 ~~~~~~~~~~~~~~~s~~g~~l~~gs~dg-~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW 533 (536)
..+ +..-+++-.|.|..+++|+.|. .|.||++++|+.+..+.+|...+. .++|+| .+..|++|++|.+|++|
T Consensus 433 P~p----~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs--~l~f~~-~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 433 PEP----IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVS--GLSFSP-DGSLLASGSWDKTVRIW 505 (893)
T ss_pred CCc----eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcce--eeEEcc-ccCeEEeccccceEEEE
Confidence 332 3333466788899999999985 499999999999999998777665 466777 46899999999999999
Q ss_pred ec
Q 009380 534 TS 535 (536)
Q Consensus 534 ~~ 535 (536)
|+
T Consensus 506 ~i 507 (893)
T KOG0291|consen 506 DI 507 (893)
T ss_pred Ee
Confidence 96
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.3e-33 Score=267.53 Aligned_cols=284 Identities=25% Similarity=0.384 Sum_probs=241.8
Q ss_pred cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380 229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR 308 (536)
Q Consensus 229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~ 308 (536)
.++.|.++|++++|+| ++.+|++++.+|.|.+|++.+ ......+..|...+..+.|+|++ ++|++++.||.|+
T Consensus 4 ~~~~h~~~i~~~~~~~--~~~~l~~~~~~g~i~i~~~~~----~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~ 76 (289)
T cd00200 4 TLKGHTGGVTCVAFSP--DGKLLATGSGDGTIKVWDLET----GELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIR 76 (289)
T ss_pred HhcccCCCEEEEEEcC--CCCEEEEeecCcEEEEEEeeC----CCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEE
Confidence 3468999999999999 899999999999999999987 55777888999999999999998 8999999999999
Q ss_pred EEECCCCeE-EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380 309 LMDAEKEVF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 309 vwd~~~~~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s 387 (536)
+||+.++.. .....+...+.++.|++++ .++++++.+|.|.+||+++++....+..|...|.+++|+|++ .++++++
T Consensus 77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~ 154 (289)
T cd00200 77 LWDLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG-TFVASSS 154 (289)
T ss_pred EEEcCcccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC-CEEEEEc
Confidence 999998543 3445677799999999986 788888889999999999888888888899999999999975 6888888
Q ss_pred CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe-ccCCCCceeeeeE
Q 009380 388 TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH-HNNQTGRWISSFR 466 (536)
Q Consensus 388 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~ 466 (536)
.|+.|++||++.++ ....+..|...+.++.|+|+++.+++++.|+.|++||+..++....+. +.. .+ ..
T Consensus 155 ~~~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~i--~~ 224 (289)
T cd00200 155 QDGTIKLWDLRTGK----CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN----GV--NS 224 (289)
T ss_pred CCCcEEEEEccccc----cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC----ce--EE
Confidence 89999999998753 344455788899999999999999999999999999998877666652 221 23 33
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 467 AIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 467 ~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
+.|++++.++++++.++.|++|++.+++.+..+..+.... ..+.|+| ++.+|++++.||.|++|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i--~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSV--TSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcE--EEEEECC-CCCEEEEecCCCeEEecC
Confidence 7799998889888889999999999888888887554333 4678888 468999999999999996
No 31
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-32 Score=262.04 Aligned_cols=333 Identities=15% Similarity=0.133 Sum_probs=262.9
Q ss_pred ecccccceeeeecCCCCcccccccccccccccccccceEEeccc-ccCccccccccCCceEEEEEEecCCccEEEEEeCC
Q 009380 179 IKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSL-TLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL 257 (536)
Q Consensus 179 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~-~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d 257 (536)
+.||...|.+|.|-|.--+ ++.+++.|+.|.+|+- .++-....+.|..-|+|+.|+| ||.++++.+.|
T Consensus 143 i~GhSr~ins~~~KpsRPf---------Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP--DG~~Fat~gsD 211 (603)
T KOG0318|consen 143 ITGHSRRINSVDFKPSRPF---------RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP--DGSRFATAGSD 211 (603)
T ss_pred eeccceeEeeeeccCCCce---------EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC--CCCeEEEecCC
Confidence 5788889999988887643 3347899999999983 2233344577899999999999 99999999999
Q ss_pred CcEEEEECCCCCCCCCceEEec---cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC----CceeEE
Q 009380 258 GNITFWNLDSQQDEDNGIYLFR---THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE----YAVFSL 330 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~----~~i~~l 330 (536)
|.|.+||-.+ ++.+..+. +|.+.|.+|+|+||+ ..|+|+|.|.+++|||+.+..+...+... ..-..+
T Consensus 212 gki~iyDGkt----ge~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~ 286 (603)
T KOG0318|consen 212 GKIYIYDGKT----GEKVGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC 286 (603)
T ss_pred ccEEEEcCCC----ccEEEEecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEE
Confidence 9999999988 66777776 899999999999999 99999999999999999998777665432 334455
Q ss_pred EecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC-----
Q 009380 331 SQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP----- 405 (536)
Q Consensus 331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~----- 405 (536)
-|. . ..|++.+.+|+|.+++...+..+..+.+|...|+++..+|++ .+|++|+.||.|.-||..++.....
T Consensus 287 lWq-k--d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h 362 (603)
T KOG0318|consen 287 LWQ-K--DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGH 362 (603)
T ss_pred EEe-C--CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccc
Confidence 565 2 478999999999999999999999999999999999999988 7999999999999999877531100
Q ss_pred --------------------------------------------Ccce--------------------e--------ecc
Q 009380 406 --------------------------------------------EPMK--------------------V--------LSH 413 (536)
Q Consensus 406 --------------------------------------------~~~~--------------------~--------~~~ 413 (536)
++.. + ..-
T Consensus 363 ~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~ 442 (603)
T KOG0318|consen 363 TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPI 442 (603)
T ss_pred cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecc
Confidence 0000 0 001
Q ss_pred cCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 414 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 414 ~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
.....+++++|+++.+++|+.|+.|+||.+............... ..++. ++||||+.||++|...+.|.+||+.+.
T Consensus 443 ~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~-a~iT~--vaySpd~~yla~~Da~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 443 GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR-AAITD--VAYSPDGAYLAAGDASRKVVLYDVASR 519 (603)
T ss_pred ccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc-CCceE--EEECCCCcEEEEeccCCcEEEEEcccC
Confidence 223567889999999999999999999999875543322111111 12343 779999999999999999999999998
Q ss_pred ccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 494 RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 494 ~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
+.......-|...+ ..++|+|++ .+||+|+-|-.|.||+++
T Consensus 520 ~~~~~~w~FHtakI-~~~aWsP~n-~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 520 EVKTNRWAFHTAKI-NCVAWSPNN-KLVATGSLDTNVIIYSVK 560 (603)
T ss_pred ceecceeeeeeeeE-EEEEeCCCc-eEEEeccccceEEEEEcc
Confidence 76433334344444 468999954 899999999999999985
No 32
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.2e-34 Score=253.89 Aligned_cols=289 Identities=13% Similarity=0.208 Sum_probs=251.0
Q ss_pred eecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccc--cccccCCceEEEEEEecCCccEEEEEe
Q 009380 178 VIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN--IARIMPGRITQMKFLPCSDVRMVVAGS 255 (536)
Q Consensus 178 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~--~~~~~~~~I~~v~~~p~~~~~~l~tg~ 255 (536)
.+.+|...|..++|+|+|..++ ++++|..|.||+...+.+. +.++|.+.|..+.|.+ |+..|++++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~a----------SgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~--d~s~i~S~g 109 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFA----------SGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR--DGSHILSCG 109 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEe----------ecCCcceEEEEeccccccceeeeccccceeEeeeecc--CCCEEEEec
Confidence 4689999999999999999999 5699999999997555443 5689999999999999 999999999
Q ss_pred CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCC
Q 009380 256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPN 335 (536)
Q Consensus 256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~ 335 (536)
.|.+|+.||+++ ++.++.+++|..-|+.+.-+.-|+.++.+++.|+++++||+++......+....+++++.|...
T Consensus 110 tDk~v~~wD~~t----G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~ 185 (338)
T KOG0265|consen 110 TDKTVRGWDAET----GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDT 185 (338)
T ss_pred CCceEEEEeccc----ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccc
Confidence 999999999999 8899999999999999997777878899999999999999999988888888899999999988
Q ss_pred CCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc--
Q 009380 336 NVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSH-- 413 (536)
Q Consensus 336 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~-- 413 (536)
+ ..+.+|+-|+.|++||++.+..++.+.+|.+.|+.|..+|+| .++.+-+.|.++++||++-.......+..+.+|
T Consensus 186 s-~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~h 263 (338)
T KOG0265|consen 186 S-DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIH 263 (338)
T ss_pred c-cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchh
Confidence 7 789999999999999999999999999999999999999988 699999999999999999765444333334443
Q ss_pred c--CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEc
Q 009380 414 K--RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVIS 489 (536)
Q Consensus 414 ~--~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d 489 (536)
. .....++|+|++..+.+|+.|..+++||......+..++ |....+..+.|+|...+|.+++.|.+|++=.
T Consensus 264 nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp-----Gh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 264 NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP-----GHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred hhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC-----CcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 2 344578999999999999999999999987766665553 2233455588999999999999999988743
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-34 Score=259.58 Aligned_cols=294 Identities=15% Similarity=0.200 Sum_probs=259.7
Q ss_pred ccccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCCcc
Q 009380 171 KDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVR 249 (536)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~ 249 (536)
.++++...+.+|...|..+.|.|+.-+++. ...|++|++||..... ..-+++|.+.|.+|+|+. .|+
T Consensus 96 pRp~l~~~l~g~r~~vt~v~~hp~~~~v~~----------as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a--~Gk 163 (406)
T KOG0295|consen 96 PRPNLVQKLAGHRSSVTRVIFHPSEALVVS----------ASEDATIKVFDTETGELERSLRGHTDSVFDISFDA--SGK 163 (406)
T ss_pred CCCCchhhhhccccceeeeeeccCceEEEE----------ecCCceEEEEEccchhhhhhhhccccceeEEEEec--Ccc
Confidence 456677788999999999999999998884 4678899999985443 455799999999999999 999
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCcee
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVF 328 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~ 328 (536)
+|++++.|=.+.+||.++. ..++....+|...|.++.|-|.| ++|++++.|.+|+.|++.++-+...+ +|..-|.
T Consensus 164 ~l~tcSsDl~~~LWd~~~~---~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr 239 (406)
T KOG0295|consen 164 YLATCSSDLSAKLWDFDTF---FRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR 239 (406)
T ss_pred EEEecCCccchhheeHHHH---HHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEE
Confidence 9999999999999999864 57788899999999999999999 99999999999999999999777655 6788999
Q ss_pred EEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecC--------------CCCEEEEEeCCCcEEE
Q 009380 329 SLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPR--------------NPNIMATSSTDGTACI 394 (536)
Q Consensus 329 ~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~--------------~~~~l~s~s~dg~i~i 394 (536)
.++.+.+| .++++++.|.+|++|-+.++++...+..|+.+|.+++|.|. +.+++.+++.|++|++
T Consensus 240 ~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~ 318 (406)
T KOG0295|consen 240 MVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI 318 (406)
T ss_pred EEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence 99999998 89999999999999999999999999999999999999874 2369999999999999
Q ss_pred EeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC
Q 009380 395 WDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS 474 (536)
Q Consensus 395 wdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 474 (536)
||+.++. .++.+.+|...|..++|+|.|+||+++..|+++++||+.+.++..++.. ....+++ ..|..+-.
T Consensus 319 wdv~tg~----cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a---h~hfvt~--lDfh~~~p 389 (406)
T KOG0295|consen 319 WDVSTGM----CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA---HEHFVTS--LDFHKTAP 389 (406)
T ss_pred EeccCCe----EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC---CcceeEE--EecCCCCc
Confidence 9999974 6677789999999999999999999999999999999999998888752 2234444 56788888
Q ss_pred EEEEEcCCCcEEEEcC
Q 009380 475 CVFIGNMTRTVEVISP 490 (536)
Q Consensus 475 ~l~~gs~dg~I~v~d~ 490 (536)
++++|+-|..+++|..
T Consensus 390 ~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 390 YVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEeccccceeeeeec
Confidence 9999999999999964
No 34
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-33 Score=240.44 Aligned_cols=284 Identities=17% Similarity=0.197 Sum_probs=241.7
Q ss_pred cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
..++..+.++|..+.|+- +|+|.++++.|.+|++|+... +..++++.+|...|..++.+.|+ ..|++|+.|..
T Consensus 10 ~~~l~~~qgaV~avryN~--dGnY~ltcGsdrtvrLWNp~r----g~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~ 82 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNV--DGNYCLTCGSDRTVRLWNPLR----GALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKA 82 (307)
T ss_pred ceeecccccceEEEEEcc--CCCEEEEcCCCceEEeecccc----cceeeeecCCCceeeeccccccc-cccccCCCCce
Confidence 345688999999999999 999999999999999999987 88999999999999999999998 99999999999
Q ss_pred EEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC--ccceeEeccCCCeEEEEEecCCCCEE
Q 009380 307 IRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR--KSATEWLLHEARINTIDFNPRNPNIM 383 (536)
Q Consensus 307 I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~--~~~~~~~~h~~~i~~i~~~p~~~~~l 383 (536)
|.+||+++|+... +.+|...|..+.|+.+. ..+++|+.|..+++||-++. ++++.+....+.|.+|.... +.+
T Consensus 83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~---heI 158 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE---HEI 158 (307)
T ss_pred EEEEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc---cEE
Confidence 9999999998765 45789999999999987 89999999999999999864 66888888899999999984 689
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceee
Q 009380 384 ATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWIS 463 (536)
Q Consensus 384 ~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 463 (536)
++|+.||+++.||+|.+. . .......+|++++|+++++..+.++.|++|++.|-.+++.+..+...... -.
T Consensus 159 vaGS~DGtvRtydiR~G~----l--~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~---ey 229 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRKGT----L--SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM---EY 229 (307)
T ss_pred EeeccCCcEEEEEeecce----e--ehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc---ee
Confidence 999999999999999974 2 22234568999999999999999999999999999999988877533222 23
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380 464 SFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533 (536)
Q Consensus 464 ~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW 533 (536)
-+.+++......+++|+.||.|++||+....++..+.. +..++...+++||.. ..|+++... .+.+|
T Consensus 230 kldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~-~~~v~v~dl~~hp~~-~~f~~A~~~-~~~~~ 296 (307)
T KOG0316|consen 230 KLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV-VSTVIVTDLSCHPTM-DDFITATGH-GDLFW 296 (307)
T ss_pred eeeeeecccceeEEeccCCceEEEEEeccceeeeeecc-CCceeEEeeecccCc-cceeEecCC-ceece
Confidence 34577788888999999999999999999988888875 444545789999976 445555543 34555
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=256.63 Aligned_cols=294 Identities=15% Similarity=0.194 Sum_probs=254.8
Q ss_pred cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccc-cccccCCceEEEEEEecCCccEEE
Q 009380 174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-IARIMPGRITQMKFLPCSDVRMVV 252 (536)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-~~~~~~~~I~~v~~~p~~~~~~l~ 252 (536)
.+-..+.||..+|.|+.+.|-...++ ++++|+++.|||+...... .+.+|-..|..+++++ -..||+
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~----------tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~--rHpYlF 209 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFA----------TGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK--RHPYLF 209 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEE----------ecCCCceeEEEEcccCeEEEeecchhheeeeeeecc--cCceEE
Confidence 34567899999999999999999999 5699999999999765543 3567999999999999 889999
Q ss_pred EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE-EeecCCCceeEEE
Q 009380 253 AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFSLS 331 (536)
Q Consensus 253 tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~l~ 331 (536)
+++.|++|+.||+.. .+.++.+.+|-..|.|++.+|.- +.|++|+.|.+++|||+++.... .+.+|..+|.++.
T Consensus 210 s~gedk~VKCwDLe~----nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLEY----NKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM 284 (460)
T ss_pred EecCCCeeEEEechh----hhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence 999999999999998 78999999999999999999998 99999999999999999987554 4557999999999
Q ss_pred ecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee
Q 009380 332 QQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL 411 (536)
Q Consensus 332 ~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~ 411 (536)
+.|.+ -.+++|+.|++|++||++.++...++..|...|.+++.+|.. +.||+++.| .|+-|++..+. .+..+.
T Consensus 285 ~~~~d-pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~----f~~nls 357 (460)
T KOG0285|consen 285 CQPTD-PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGE----FLQNLS 357 (460)
T ss_pred eecCC-CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCch-hhhhccCCc-cceeccCCccc----hhhccc
Confidence 99988 589999999999999999999999999999999999999966 789999877 59999999864 555677
Q ss_pred cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCc---eeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380 412 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGR---WISSFRAIWGWDDSCVFIGNMTRTVEVI 488 (536)
Q Consensus 412 ~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~g~~l~~gs~dg~I~v~ 488 (536)
+|..-|++++.+.|| ++++|+..|.|.+||.+++...+......+.|. ...++..+|...|..|++|..|.+|++|
T Consensus 358 gh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 358 GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMY 436 (460)
T ss_pred cccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEE
Confidence 999999999999776 688999999999999998766655532223222 2234668899999999999999999999
Q ss_pred cCCc
Q 009380 489 SPAQ 492 (536)
Q Consensus 489 d~~~ 492 (536)
.-..
T Consensus 437 keDe 440 (460)
T KOG0285|consen 437 KEDE 440 (460)
T ss_pred eccc
Confidence 7543
No 36
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6e-34 Score=283.77 Aligned_cols=246 Identities=20% Similarity=0.311 Sum_probs=216.5
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCC---------------------------CCCCceEEeccCCCCEE
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQ---------------------------DEDNGIYLFRTHLGPIS 286 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~---------------------------~~~~~~~~~~~h~~~V~ 286 (536)
...++|..|++ |+.+||.|-.|..|++|.+.... ........+.+|.++|.
T Consensus 378 ~~~v~ca~fSd--dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 378 YQGVTCAEFSD--DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred CCcceeEeecC--CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence 56799999999 99999999999999999987310 01233456889999999
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec
Q 009380 287 GIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL 365 (536)
Q Consensus 287 ~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 365 (536)
.+.|+|+. ++|++||.|++||+|.+.+......+ +|..+|+++.|+|.| .++++++.|++-++|......+++.+.+
T Consensus 456 g~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 456 GCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeeecccc-cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhhhcc
Confidence 99999998 99999999999999999998665544 788999999999998 8999999999999999999999999999
Q ss_pred cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 366 h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~ 445 (536)
|...|.|+.|||.. +++++||.|.+|++||+.++. .+..+.+|.++|.+++|||+|.+|++|+.||.|.|||+.+
T Consensus 534 hlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~----~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGN----SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred cccccceEEECCcc-cccccCCCCceEEEEEcCCCc----EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 99999999999955 899999999999999999975 4556669999999999999999999999999999999999
Q ss_pred CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 446 FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
+..+..+..+. + +...+.||.+|..|++|+.|++|++||+..-
T Consensus 609 ~~~v~~l~~Ht--~---ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 609 GSLVKQLKGHT--G---TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred Ccchhhhhccc--C---ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 98887774332 2 2333779999999999999999999998653
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=8.6e-32 Score=295.39 Aligned_cols=291 Identities=18% Similarity=0.212 Sum_probs=227.7
Q ss_pred cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC----CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE----DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~----~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
..|.+.|++++|+| ++++||+|+.|+.|+||++...... ......+. +...|.+++|++....+|++++.||+
T Consensus 480 ~~~~~~V~~i~fs~--dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 480 LNSSNLVCAIGFDR--DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 45899999999999 9999999999999999998642100 11223333 34679999999865489999999999
Q ss_pred EEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEE
Q 009380 307 IRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMAT 385 (536)
Q Consensus 307 I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s 385 (536)
|++||+.++.... +..|...|++++|+|.++.+|++|+.||.|++||++++..+..+.. ...|.++.|++.++++|++
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-CCCeEEEEEeCCCCCEEEE
Confidence 9999999876544 4478899999999985558999999999999999999988888874 4689999997655689999
Q ss_pred EeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC------CcceEEeccCCCC
Q 009380 386 SSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF------ENTSMIHHNNQTG 459 (536)
Q Consensus 386 ~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~------~~~~~~~~~~~~~ 459 (536)
|+.||.|++||+++.. .......+|...|.++.|. ++.+|++++.|++|+|||+... ..+..+.. ..
T Consensus 636 gs~dg~I~iwD~~~~~---~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g---h~ 708 (793)
T PLN00181 636 GSADHKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG---HT 708 (793)
T ss_pred EeCCCeEEEEECCCCC---ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC---CC
Confidence 9999999999998743 1234556899999999997 6789999999999999999743 23333321 11
Q ss_pred ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccC-----------CceeeeeeeEeecCCCCCEEEEEccCC
Q 009380 460 RWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS-----------PYISAIPCRFHAHPHQVGTLAGATGGG 528 (536)
Q Consensus 460 ~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~-----------~~~~~~~~~~~~~p~~~~~lasgs~Dg 528 (536)
..+.. +.|++++.+|++|+.|+.|.+|+......+..+.. .+.......++|+| ++.+|++|+.||
T Consensus 709 ~~i~~--v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG 785 (793)
T PLN00181 709 NVKNF--VGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTG 785 (793)
T ss_pred CCeeE--EEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCC
Confidence 12232 66899999999999999999999876544322211 11122335788998 569999999999
Q ss_pred eEEEEec
Q 009380 529 QVYVWTS 535 (536)
Q Consensus 529 ~v~iW~~ 535 (536)
.|+||++
T Consensus 786 ~I~i~~~ 792 (793)
T PLN00181 786 NIKILEM 792 (793)
T ss_pred cEEEEec
Confidence 9999986
No 38
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9.6e-32 Score=295.02 Aligned_cols=294 Identities=13% Similarity=0.113 Sum_probs=236.1
Q ss_pred cccccceeeeecCCCCcccccccccccccccccccceEEecccccCc---c-----ccccccCCceEEEEEEecCCccEE
Q 009380 180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP---E-----NIARIMPGRITQMKFLPCSDVRMV 251 (536)
Q Consensus 180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~---~-----~~~~~~~~~I~~v~~~p~~~~~~l 251 (536)
..|.+.|.++.|+++|++++ +++.|+.|+||+..... . .....+...|.+++|+|. ++.+|
T Consensus 480 ~~~~~~V~~i~fs~dg~~la----------tgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l 548 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFA----------TAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSY-IKSQV 548 (793)
T ss_pred cCCCCcEEEEEECCCCCEEE----------EEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccC-CCCEE
Confidence 45889999999999999988 45889999999964211 0 011123568999999984 47899
Q ss_pred EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEE
Q 009380 252 VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLS 331 (536)
Q Consensus 252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~ 331 (536)
++++.||+|+|||+.+ ...+..+.+|.+.|++++|+|..+.+|++|+.||+|++||+.++.....+.+...+.++.
T Consensus 549 as~~~Dg~v~lWd~~~----~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~ 624 (793)
T PLN00181 549 ASSNFEGVVQVWDVAR----SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQ 624 (793)
T ss_pred EEEeCCCeEEEEECCC----CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEE
Confidence 9999999999999987 677888999999999999997443899999999999999999887766666667899999
Q ss_pred ecCCCCCEEEEEECCCeEEEEECCCCc-cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC--CCCcc
Q 009380 332 QQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD--KPEPM 408 (536)
Q Consensus 332 ~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~--~~~~~ 408 (536)
|++.++.+|++|+.||.|++||+++++ .+..+.+|...|.++.|.+ + .+|++++.|++|++||++..... ...+.
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~ 702 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-S-STLVSSSTDNTLKLWDLSMSISGINETPLH 702 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-C-CEEEEEECCCEEEEEeCCCCccccCCcceE
Confidence 976555899999999999999999876 4677889999999999974 4 68999999999999999864211 12334
Q ss_pred eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC--------CCceeeeeEEEEcCCCCEEEEEc
Q 009380 409 KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ--------TGRWISSFRAIWGWDDSCVFIGN 480 (536)
Q Consensus 409 ~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~s~~g~~l~~gs 480 (536)
.+.+|...+.+++|+|++.+|++|+.|+.|++|+.....+...+..... ......+..++|++++.+|++|+
T Consensus 703 ~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~ 782 (793)
T PLN00181 703 SFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN 782 (793)
T ss_pred EEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEec
Confidence 5568999999999999999999999999999999876554433221100 01111234588999999999999
Q ss_pred CCCcEEEEcC
Q 009380 481 MTRTVEVISP 490 (536)
Q Consensus 481 ~dg~I~v~d~ 490 (536)
.+|.|+||++
T Consensus 783 ~dG~I~i~~~ 792 (793)
T PLN00181 783 STGNIKILEM 792 (793)
T ss_pred CCCcEEEEec
Confidence 9999999986
No 39
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-32 Score=265.14 Aligned_cols=284 Identities=17% Similarity=0.195 Sum_probs=236.3
Q ss_pred cceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc-ccccccCCceEEEEEEecCCccEEEEE
Q 009380 176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRMVVAG 254 (536)
Q Consensus 176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~l~tg 254 (536)
+..+..+.+.|.++.++|..-.+.. +-+.|.|.||+.+.... ....+..-+|.+..|-+ -.+++++|
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la----------~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia--RknWiv~G 73 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILA----------ALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA--RKNWIVTG 73 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEE----------eeecCeeEEEecccceeeeeeeecccchhhheeee--ccceEEEe
Confidence 3445668899999999999987763 35788999999754432 22345578999999999 88999999
Q ss_pred eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC--eEEEeecCCCceeEEEe
Q 009380 255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE--VFDLVYSSEYAVFSLSQ 332 (536)
Q Consensus 255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~--~~~~~~~~~~~i~~l~~ 332 (536)
+.|.+|+||+..+ ...+..|..|...|.+|+.+|.. .+++|+|.|-+|++||.+.+ ......+|..-|.+++|
T Consensus 74 sDD~~IrVfnynt----~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 74 SDDMQIRVFNYNT----GEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred cCCceEEEEeccc----ceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence 9999999999998 88999999999999999999998 99999999999999999986 33445589999999999
Q ss_pred cCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCC-CEEEEEeCCCcEEEEeCCCCCCCCCCcceee
Q 009380 333 QPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNP-NIMATSSTDGTACIWDLRSMATDKPEPMKVL 411 (536)
Q Consensus 333 ~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~-~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~ 411 (536)
+|.+++.+++++.|++|++|.+.+..+..++.+|...|+||++-+.|. -+|++|+.|.+|+|||..+.. .+..+.
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~----CV~TLe 224 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS----CVQTLE 224 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH----HHHHhh
Confidence 999999999999999999999999999999999999999999998442 399999999999999999843 445566
Q ss_pred cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380 412 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV 485 (536)
Q Consensus 412 ~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I 485 (536)
+|...|+.+.|+|.-..|++|+.||+++||+..+.+...++.... ..+.+ +.-.+.+..+++|..+|.|
T Consensus 225 GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl---eRvW~--I~~~k~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 225 GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL---ERVWC--IAAHKGDGKIAVGFDEGSV 293 (794)
T ss_pred cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC---ceEEE--EeecCCCCeEEEeccCCcE
Confidence 899999999999999999999999999999988776665553221 12222 3334455556666555544
No 40
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-32 Score=238.53 Aligned_cols=284 Identities=19% Similarity=0.300 Sum_probs=228.4
Q ss_pred eEEEEEEecCCccEEEEE------eCCCcEEEEECCCCCCCCCceEEec--cCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380 237 ITQMKFLPCSDVRMVVAG------SKLGNITFWNLDSQQDEDNGIYLFR--THLGPISGIVTQQYCLSKIFTSCYDGLIR 308 (536)
Q Consensus 237 I~~v~~~p~~~~~~l~tg------~~dg~v~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg~I~ 308 (536)
=+++.|+|..++++.++. ...|.+.|.++.. ...+..+. .-...+..++|++...+.+++++.||+++
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~----~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLr 86 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTD----PKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLR 86 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCC----CCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEE
Confidence 368899997555444333 2358899999874 23333222 24577999999999889999999999999
Q ss_pred EEECCCC--eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380 309 LMDAEKE--VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386 (536)
Q Consensus 309 vwd~~~~--~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~ 386 (536)
+||+... .+.....|...|.++.|++.....+++++.||+|++||...++.+.++.+|...|....|+|..+++|+++
T Consensus 87 l~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~ 166 (311)
T KOG0277|consen 87 LFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASA 166 (311)
T ss_pred EeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEc
Confidence 9996532 33445578999999999998878899999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcc-eEEeccCCCCceeee
Q 009380 387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENT-SMIHHNNQTGRWISS 464 (536)
Q Consensus 387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~ 464 (536)
|.|+++++||++... ..+.+..|...|.++.|+. +.+.++||+.|+.|++||+++.+.. ..+ .++...+
T Consensus 167 Sgd~~l~lwdvr~~g----k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL-----~gh~~AV 237 (311)
T KOG0277|consen 167 SGDGTLRLWDVRSPG----KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL-----NGHGLAV 237 (311)
T ss_pred cCCceEEEEEecCCC----ceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee-----cCCceEE
Confidence 999999999999852 4555778999999999998 7788999999999999999987633 222 2233455
Q ss_pred eEEEEcCC-CCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 465 FRAIWGWD-DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 465 ~~~~~s~~-g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
-++.|||. ...|++++.|-+++|||...+.....-..+|..-+ +.+.|++.++.++|+++.|+.++||+
T Consensus 238 Rkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv-~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 238 RKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFV-CGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred EEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEE-eccccccccCceeeecccccceeeec
Confidence 56789986 45699999999999999985544333333454444 67889888999999999999999997
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.6e-31 Score=257.20 Aligned_cols=285 Identities=20% Similarity=0.264 Sum_probs=240.0
Q ss_pred ceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEEe
Q 009380 177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGS 255 (536)
Q Consensus 177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~ 255 (536)
..+.+|.+.|.++.++++++.++.. ..+|.+.+|++... .......|...+..+.|+| ++++|++++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~----------~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~ 70 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATG----------SGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA--DGTYLASGS 70 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEe----------ecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC--CCCEEEEEc
Confidence 3567999999999999999988844 56889999998543 2344567888999999999 889999999
Q ss_pred CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCceeEEEecC
Q 009380 256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQP 334 (536)
Q Consensus 256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~ 334 (536)
.+|.|.+|++.. ...+..+..|...|.++.|++++ .++++++.||.|.+||+.++.....+ .|...+.+++|+|
T Consensus 71 ~~~~i~i~~~~~----~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 71 SDKTIRLWDLET----GECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred CCCeEEEEEcCc----ccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence 999999999987 56777888999999999999997 88888888999999999976655444 4778999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc
Q 009380 335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK 414 (536)
Q Consensus 335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~ 414 (536)
++ .++++++.+|.|.+||+++++.+..+..|...|.++.|+|++ ..+++++.|+.|++||++.++ .......|.
T Consensus 146 ~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~ 219 (289)
T cd00200 146 DG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK----CLGTLRGHE 219 (289)
T ss_pred cC-CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCc----eecchhhcC
Confidence 86 788888879999999999999888998999999999999987 578888889999999998743 233333788
Q ss_pred CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEc
Q 009380 415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVIS 489 (536)
Q Consensus 415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d 489 (536)
..+.++.|+|++.++++++.|+.|++||+.+++....+... .. ....+.|++++.+|++++.|+.|++|+
T Consensus 220 ~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~---~~--~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 220 NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH---TN--SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc---CC--cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 89999999999888888888999999999887766666421 11 233477999999999999999999996
No 42
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8e-32 Score=236.71 Aligned_cols=289 Identities=13% Similarity=0.156 Sum_probs=235.0
Q ss_pred cccceecccccceeeeecCCC-CcccccccccccccccccccceEEeccccc----Cccc-cccccCCceEEEEEEecCC
Q 009380 174 NLGFVIKDEFNGFKTCKDEGL-GVGSCDLIKGVVKTEKIEVGSCVDIGSLTL----KPEN-IARIMPGRITQMKFLPCSD 247 (536)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~----~~~~-~~~~~~~~I~~v~~~p~~~ 247 (536)
.+...+.+|.+.+..+.++|- |.++++ ++.|..|++|+... .... +-.+|...|.+++|+| .
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAs----------cg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp--~ 72 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILAS----------CGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP--H 72 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEe----------ecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC--C
Confidence 344568999999999999999 888884 48888999999862 1111 2246899999999999 9
Q ss_pred ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC----eEEEeecC
Q 009380 248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE----VFDLVYSS 323 (536)
Q Consensus 248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~----~~~~~~~~ 323 (536)
|++|++|+.|.++.||.-...+ .+++..+.+|...|.|++|+++| ++|++|+.|++|-||.+..+ ....+..|
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~e--fecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~H 149 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDGE--FECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEH 149 (312)
T ss_pred CcEEEEeeccceEEEeecCCCc--eeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence 9999999999999999877544 78899999999999999999999 99999999999999998753 22345679
Q ss_pred CCceeEEEecCCCCCEEEEEECCCeEEEEECCC---CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 009380 324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS---RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSM 400 (536)
Q Consensus 324 ~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~---~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~ 400 (536)
...|..+.|+|.. .+|++++.|.+|++|+-.. -.+++++.+|...|.+++|++.| ..|++++.|++++||-+...
T Consensus 150 tqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 150 TQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred cccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeeccC
Confidence 9999999999987 7999999999999998763 35688999999999999999988 78999999999999987642
Q ss_pred CCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC--CcceEE--eccCCCCceeeeeEEEEcCC-CCE
Q 009380 401 ATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF--ENTSMI--HHNNQTGRWISSFRAIWGWD-DSC 475 (536)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~--~~~~~~--~~~~~~~~~~~~~~~~~s~~-g~~ 475 (536)
-...|...++.+.|. +| .|++++.|+.|+||.-... .+...+ .....++..+.. +.|.|. ...
T Consensus 228 --------~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNs--V~w~p~~~~~ 295 (312)
T KOG0645|consen 228 --------LSGMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNS--VQWNPKVSNR 295 (312)
T ss_pred --------cchhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccce--EEEcCCCCCc
Confidence 123478899999998 44 6999999999999976532 111111 112222323333 789995 678
Q ss_pred EEEEcCCCcEEEEcCC
Q 009380 476 VFIGNMTRTVEVISPA 491 (536)
Q Consensus 476 l~~gs~dg~I~v~d~~ 491 (536)
|++|+.||.|++|.+.
T Consensus 296 L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 296 LASGGDDGIVNFWELE 311 (312)
T ss_pred eeecCCCceEEEEEec
Confidence 9999999999999764
No 43
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=6.4e-32 Score=236.03 Aligned_cols=287 Identities=16% Similarity=0.199 Sum_probs=240.6
Q ss_pred cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380 229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR 308 (536)
Q Consensus 229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~ 308 (536)
-.+.|...|.+|+|+. +|..|++|+.|+++.+|+++... ...-....+|.+.|-.++|+|..+++|++++.|.+|+
T Consensus 15 ~~~~~~~~v~Sv~wn~--~g~~lasgs~dktv~v~n~e~~r--~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNC--DGTKLASGSFDKTVSVWNLERDR--FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred HhhhhhhcceEEEEcc--cCceeeecccCCceEEEEecchh--hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence 3578889999999999 99999999999999999998631 2333467889999999999999999999999999999
Q ss_pred EEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC
Q 009380 309 LMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST 388 (536)
Q Consensus 309 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~ 388 (536)
+||++.+++.........-.-+.|+|++ .++++++.|..|.+.|.++.+.+...+ ....++-++|+.++ ++|+....
T Consensus 91 ~wd~r~~k~~~~i~~~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~n-d~Fflt~G 167 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETKGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSN-DLFFLTNG 167 (313)
T ss_pred EEEeccCcEEEEeeccCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCC-CEEEEecC
Confidence 9999999988887777777789999999 899999999999999999988776665 55677889999766 45555555
Q ss_pred CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEE
Q 009380 389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAI 468 (536)
Q Consensus 389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (536)
.|+|.|......+ .+..+..|.....||.|+|+|++||+|+.|..+.+||+...-+...+....-. +.. +.
T Consensus 168 lG~v~ILsypsLk----pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp---VRT--lS 238 (313)
T KOG1407|consen 168 LGCVEILSYPSLK----PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP---VRT--LS 238 (313)
T ss_pred CceEEEEeccccc----cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc---eEE--EE
Confidence 7999999988764 56677799999999999999999999999999999999988888887544332 333 66
Q ss_pred EcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccC---------CeEEEEec
Q 009380 469 WGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG---------GQVYVWTS 535 (536)
Q Consensus 469 ~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D---------g~v~iW~~ 535 (536)
||.+|++|++|+.|..|.|=++.+|..+..++... .. ..++|||.. .+||-+++| |.|++|-+
T Consensus 239 FS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~--~t-~tVAWHPk~-~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 239 FSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG--PT-FTVAWHPKR-PLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred eccCcceeeccCccceEEeEecccCCeEEEeeccC--Cc-eeEEecCCC-ceeeEEecCCCCccccccceeEEecC
Confidence 99999999999999999999999999999887432 22 468999965 788877644 66777643
No 44
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1e-31 Score=274.74 Aligned_cols=290 Identities=14% Similarity=0.177 Sum_probs=240.7
Q ss_pred cceeccc-ccceeeeecCCCCcccccccccccccccccccceEEecccccCc---cccccccCCceEEEEEEecCCccEE
Q 009380 176 GFVIKDE-FNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP---ENIARIMPGRITQMKFLPCSDVRMV 251 (536)
Q Consensus 176 ~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~---~~~~~~~~~~I~~v~~~p~~~~~~l 251 (536)
...+.+| ...|.++.|+++|+.++.. ..++.+.+|+..... ......|...|++++|+| ++.++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~----------~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~--d~~~l 218 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAA----------SSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP--DGSYL 218 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEc----------cCCCcEEEeecccccchhhccccccccceeeeEECC--CCcEE
Confidence 4445554 7999999999999998854 677889999873333 333467999999999999 99999
Q ss_pred EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEE
Q 009380 252 VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSL 330 (536)
Q Consensus 252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l 330 (536)
++|+.|++|+|||+... ...+..+.+|...|++++|+|++ +++++|+.|++|++||++++++.. +..|...|+++
T Consensus 219 ~s~s~D~tiriwd~~~~---~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~ 294 (456)
T KOG0266|consen 219 LSGSDDKTLRIWDLKDD---GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGL 294 (456)
T ss_pred EEecCCceEEEeeccCC---CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEE
Confidence 99999999999999432 57889999999999999999999 999999999999999999977655 45688999999
Q ss_pred EecCCCCCEEEEEECCCeEEEEECCCCc--cceeEeccCCC--eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 009380 331 SQQPNNVNTLYFGEGQGGLNIWDVRSRK--SATEWLLHEAR--INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPE 406 (536)
Q Consensus 331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~h~~~--i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~ 406 (536)
+|++++ ++|++++.|+.|++||+.++. ++..+..+... +++++|+|++ .++++++.|+.+++||++.+. .
T Consensus 295 ~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~----~ 368 (456)
T KOG0266|consen 295 AFSPDG-NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGK----S 368 (456)
T ss_pred EECCCC-CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCc----c
Confidence 999999 899999999999999999998 56777766655 9999999977 799999999999999999864 4
Q ss_pred cceeecccCc---eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc--C
Q 009380 407 PMKVLSHKRA---VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN--M 481 (536)
Q Consensus 407 ~~~~~~~~~~---v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs--~ 481 (536)
+....+|... +.+..+++.+.++++|+.|+.|.+||+.++..+..+.... ......+.|++...++++++ .
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~----~~~~~~~~~~~~~~~~~s~s~~~ 444 (456)
T KOG0266|consen 369 VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS----KAAVSDLSSHPTENLIASSSFEG 444 (456)
T ss_pred eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC----CCceeccccCCCcCeeeecCcCC
Confidence 4445556553 4455567789999999999999999999877776664331 11233477899999999998 6
Q ss_pred CCcEEEEcCC
Q 009380 482 TRTVEVISPA 491 (536)
Q Consensus 482 dg~I~v~d~~ 491 (536)
|+.|++|...
T Consensus 445 d~~~~~w~~~ 454 (456)
T KOG0266|consen 445 DGLIRLWKYD 454 (456)
T ss_pred CceEEEecCC
Confidence 8889999754
No 45
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-31 Score=234.01 Aligned_cols=286 Identities=14% Similarity=0.141 Sum_probs=240.1
Q ss_pred cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380 229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR 308 (536)
Q Consensus 229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~ 308 (536)
.+++|..+|+.+.|+. +|.+|+++++|.++.||-..+ ++.+-++.+|++.|+|+...-+. ..+++|+.|.+++
T Consensus 5 ~l~GHERplTqiKyN~--eGDLlFscaKD~~~~vw~s~n----GerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~k 77 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNR--EGDLLFSCAKDSTPTVWYSLN----GERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAK 77 (327)
T ss_pred ccccCccccceEEecC--CCcEEEEecCCCCceEEEecC----CceeeeecCCCceEEEEEecCCc-ceeeeccccceeE
Confidence 4688999999999999 999999999999999998876 78999999999999999999988 9999999999999
Q ss_pred EEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEEC-----CCeEEEEECC-------CCccceeEeccCCCeEEEEEe
Q 009380 309 LMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEG-----QGGLNIWDVR-------SRKSATEWLLHEARINTIDFN 376 (536)
Q Consensus 309 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~-----dg~i~i~d~~-------~~~~~~~~~~h~~~i~~i~~~ 376 (536)
+||+++|+.........+|..+.|++++ +++++.+. .+.|.++|++ ..++...+..+.+.++.+-|.
T Consensus 78 LWDv~tGk~la~~k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 78 LWDVETGKQLATWKTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EEEcCCCcEEEEeecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9999999999999999999999999998 67666654 3689999998 345677788889999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC
Q 009380 377 PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN 456 (536)
Q Consensus 377 p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~ 456 (536)
|.+ .+|++|..||.|.+||++++. ..+.....|...|+.+.++|+..+++|+|.|.+-++||+.+.+.+.++....
T Consensus 157 ~l~-~~ii~Ghe~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~ 232 (327)
T KOG0643|consen 157 PLG-ETIIAGHEDGSISIYDARTGK---ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER 232 (327)
T ss_pred ccC-CEEEEecCCCcEEEEEcccCc---eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc
Confidence 987 799999999999999999974 2333334689999999999999999999999999999999999998886544
Q ss_pred CCCceeeeeEEEEcCCCCEEEEEcCCCcEE--------------EEcCCccccceeccCCceeeeeeeEeecCCCCCEEE
Q 009380 457 QTGRWISSFRAIWGWDDSCVFIGNMTRTVE--------------VISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLA 522 (536)
Q Consensus 457 ~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~--------------v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~la 522 (536)
+ +.+ ++++|....++.|+...... +|++-..+.+..+++|..... .+++|| +|...+
T Consensus 233 P----vN~--aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPIN--svAfhP-dGksYs 303 (327)
T KOG0643|consen 233 P----VNT--AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPIN--SVAFHP-DGKSYS 303 (327)
T ss_pred c----ccc--eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcc--eeEECC-CCcccc
Confidence 3 333 66788777777765443222 223323345666777665554 789999 689999
Q ss_pred EEccCCeEEEEec
Q 009380 523 GATGGGQVYVWTS 535 (536)
Q Consensus 523 sgs~Dg~v~iW~~ 535 (536)
+|++||.|+|.-.
T Consensus 304 SGGEDG~VR~h~F 316 (327)
T KOG0643|consen 304 SGGEDGYVRLHHF 316 (327)
T ss_pred cCCCCceEEEEEe
Confidence 9999999998654
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.2e-33 Score=252.94 Aligned_cols=269 Identities=16% Similarity=0.241 Sum_probs=223.9
Q ss_pred cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380 233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA 312 (536)
Q Consensus 233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~ 312 (536)
....|+|+.+ |...+++|..|++|+|||..+ ..+...+.+|++.|.|+.|.. ..|++||.|.+|++||+
T Consensus 196 ~skgVYClQY----DD~kiVSGlrDnTikiWD~n~----~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv 264 (499)
T KOG0281|consen 196 NSKGVYCLQY----DDEKIVSGLRDNTIKIWDKNS----LECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDV 264 (499)
T ss_pred cCCceEEEEe----cchhhhcccccCceEEecccc----HHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEec
Confidence 4678999999 557899999999999999997 788999999999999999965 68999999999999999
Q ss_pred CCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc---ceeEeccCCCeEEEEEecCCCCEEEEEeC
Q 009380 313 EKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS---ATEWLLHEARINTIDFNPRNPNIMATSST 388 (536)
Q Consensus 313 ~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~h~~~i~~i~~~p~~~~~l~s~s~ 388 (536)
+++++.. ++.|...|..+.|+. +++++++.|.++.+||+..... .+.+.+|...|+.+.|.. .++++++.
T Consensus 265 ~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASg 338 (499)
T KOG0281|consen 265 NTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASG 338 (499)
T ss_pred cCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecC
Confidence 9998765 457789999999984 5899999999999999987653 456779999999999974 69999999
Q ss_pred CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEE
Q 009380 389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAI 468 (536)
Q Consensus 389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (536)
|.+|++|++.++. .+..+.+|...|.|+.+ .|+++++|+.|.+|++||+..+.++..+....... .+ +.
T Consensus 339 DRTikvW~~st~e----fvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLv---Rc--iR 407 (499)
T KOG0281|consen 339 DRTIKVWSTSTCE----FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV---RC--IR 407 (499)
T ss_pred CceEEEEecccee----eehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhh---hh--ee
Confidence 9999999999964 55666799999999988 58999999999999999999999998885433332 22 22
Q ss_pred EcCCCCEEEEEcCCCcEEEEcCCccccc---------eeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 469 WGWDDSCVFIGNMTRTVEVISPAQRRSV---------ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 469 ~s~~g~~l~~gs~dg~I~v~d~~~~~~~---------~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
| |.+.+++|..||.|+|||+..+... .++.. |.+.+ ..+.| |...+++++.|.+|.|||..
T Consensus 408 F--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~-hsgRV-FrLQF---D~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 408 F--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE-HSGRV-FRLQF---DEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred e--cCceeeeccccceEEEEecccccCCcccccchHHHhhhh-cccee-EEEee---cceEEEeccCCCeEEEEEcC
Confidence 3 5678999999999999999876432 22222 22222 46677 56889999999999999963
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.1e-31 Score=246.02 Aligned_cols=282 Identities=17% Similarity=0.270 Sum_probs=233.7
Q ss_pred ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC--CCEEEEEECCCeE
Q 009380 230 ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC--LSKIFTSCYDGLI 307 (536)
Q Consensus 230 ~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~~l~s~s~dg~I 307 (536)
.-.|++.|.+|...+ .+|++|++||.+++|+.. ++....+.+|+++|.+++|.-.+ ...|++++.|.++
T Consensus 101 ~~~hdDWVSsv~~~~----~~IltgsYDg~~riWd~~-----Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl 171 (423)
T KOG0313|consen 101 CFLHDDWVSSVKGAS----KWILTGSYDGTSRIWDLK-----GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL 171 (423)
T ss_pred cccchhhhhhhcccC----ceEEEeecCCeeEEEecC-----CceEEEEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence 356899999998865 799999999999999998 78999999999999988886544 1359999999999
Q ss_pred EEEECCCCeE-----EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC-------------------------C
Q 009380 308 RLMDAEKEVF-----DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS-------------------------R 357 (536)
Q Consensus 308 ~vwd~~~~~~-----~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~-------------------------~ 357 (536)
++|-++.+.. ....+|...|-+++..+++ ..+++|+.|.+|.||+..+ +
T Consensus 172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred EEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 9999987643 2233899999999999998 8999999999999999321 1
Q ss_pred ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCc
Q 009380 358 KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDT 437 (536)
Q Consensus 358 ~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~ 437 (536)
.++.++.+|..+|.+|.|++ . ..+++++.|.+|+.||+.++. ..........++++.++|..++|++|+.|..
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d-~-~v~yS~SwDHTIk~WDletg~-----~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~ 323 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSD-A-TVIYSVSWDHTIKVWDLETGG-----LKSTLTTNKSLNCISYSPLSKLLASGSSDRH 323 (423)
T ss_pred CceEEecccccceeeEEEcC-C-CceEeecccceEEEEEeeccc-----ceeeeecCcceeEeecccccceeeecCCCCc
Confidence 24567789999999999998 3 589999999999999999964 3444556788999999999999999999999
Q ss_pred EEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCE-EEEEcCCCcEEEEcCCccc-cceeccCCceeeeeeeEeecC
Q 009380 438 IGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC-VFIGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHP 515 (536)
Q Consensus 438 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-l~~gs~dg~I~v~d~~~~~-~~~~l~~~~~~~~~~~~~~~p 515 (536)
|++||.+++.-.........+..|+.. +.|+|...+ |++|+.|+++++||+++.. +++.+.+|...+. ++.|.
T Consensus 324 irl~DPR~~~gs~v~~s~~gH~nwVss--vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl--~vdW~- 398 (423)
T KOG0313|consen 324 IRLWDPRTGDGSVVSQSLIGHKNWVSS--VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVL--SVDWN- 398 (423)
T ss_pred eeecCCCCCCCceeEEeeecchhhhhh--eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEE--EEecc-
Confidence 999999987543333222233336666 679997655 8899999999999999887 8999998866655 67776
Q ss_pred CCCCEEEEEccCCeEEEEe
Q 009380 516 HQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 516 ~~~~~lasgs~Dg~v~iW~ 534 (536)
++..|++||.|.+|+|+.
T Consensus 399 -~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 399 -EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred -CCceEEeccCcceEEEec
Confidence 567999999999999986
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-32 Score=232.72 Aligned_cols=248 Identities=19% Similarity=0.298 Sum_probs=216.7
Q ss_pred CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEE
Q 009380 272 DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLN 350 (536)
Q Consensus 272 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~ 350 (536)
.+....+..|.++|..+.|+-+| ++.++|+.|.+|++|+...+.++..+ +|...|..++.+.++ ..|++|+.|..+.
T Consensus 7 tkr~~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~ 84 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQ 84 (307)
T ss_pred chhceeecccccceEEEEEccCC-CEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-cccccCCCCceEE
Confidence 34667788999999999999999 99999999999999999998877666 688899999999988 7899999999999
Q ss_pred EEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeE
Q 009380 351 IWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSL 429 (536)
Q Consensus 351 i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l 429 (536)
+||+.+|+.++.|.+|...|+.|.|+.+. .++++|+.|.++++||.|+.. ..++++. .....|.++..+ +..|
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s---~ePiQildea~D~V~Si~v~--~heI 158 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRS---FEPIQILDEAKDGVSSIDVA--EHEI 158 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCC---CCccchhhhhcCceeEEEec--ccEE
Confidence 99999999999999999999999999866 799999999999999999864 2344444 677899999885 6789
Q ss_pred EEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeee
Q 009380 430 ATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPC 509 (536)
Q Consensus 430 ~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~ 509 (536)
++|+.||+++.||++.+....- ..+.++++ +.|+++++++++++.|+++++.|-.+|++++.+.+|.......
T Consensus 159 vaGS~DGtvRtydiR~G~l~sD-----y~g~pit~--vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykl 231 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRKGTLSSD-----YFGHPITS--VSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKL 231 (307)
T ss_pred EeeccCCcEEEEEeecceeehh-----hcCCccee--EEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeee
Confidence 9999999999999998765433 23444555 6799999999999999999999999999999999988777766
Q ss_pred eEeecCCCCCEEEEEccCCeEEEEec
Q 009380 510 RFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 510 ~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
..++...+ ..+++|++||.|++||+
T Consensus 232 dc~l~qsd-thV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 232 DCCLNQSD-THVFSGSEDGKVYFWDL 256 (307)
T ss_pred eeeecccc-eeEEeccCCceEEEEEe
Confidence 66666545 89999999999999997
No 49
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=6.6e-32 Score=247.49 Aligned_cols=287 Identities=15% Similarity=0.233 Sum_probs=235.1
Q ss_pred ccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEec-CCccEEEEEeCCCc
Q 009380 181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPC-SDVRMVVAGSKLGN 259 (536)
Q Consensus 181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~-~~~~~l~tg~~dg~ 259 (536)
.|.|+|.+++.. ++.+ +++.+||.+++|+...+......+|.++|.+++|.-. .....+++++.|.+
T Consensus 103 ~hdDWVSsv~~~--~~~I----------ltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqt 170 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWI----------LTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQT 170 (423)
T ss_pred cchhhhhhhccc--CceE----------EEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCce
Confidence 467788887777 3333 3678999999999988888888999999999888752 22346999999999
Q ss_pred EEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC------------------------
Q 009380 260 ITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE------------------------ 315 (536)
Q Consensus 260 v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~------------------------ 315 (536)
+++|..+.+......+..-++|...|.++...+++ ..+++||.|.+|.+|+....
T Consensus 171 l~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~ 249 (423)
T KOG0313|consen 171 LRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT 249 (423)
T ss_pred EEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence 99999987654344555556999999999999999 99999999999999994221
Q ss_pred --eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 009380 316 --VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTAC 393 (536)
Q Consensus 316 --~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~ 393 (536)
....+.+|..+|.++.|++. ..+++++.|.+|+.||+.++..+.++. ....++||..+|.. ++|++|+.|..|+
T Consensus 250 r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~-~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 250 RTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLS-KLLASGSSDRHIR 325 (423)
T ss_pred cCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeee-cCcceeEeeccccc-ceeeecCCCCcee
Confidence 12445689999999999984 689999999999999999999988887 46789999999966 8999999999999
Q ss_pred EEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCC-cceEEeccCCCCceeeeeEEEEcC
Q 009380 394 IWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFE-NTSMIHHNNQTGRWISSFRAIWGW 471 (536)
Q Consensus 394 iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~ 471 (536)
+||.|++.. ......+.+|.+.|.++.|+| +..+|++++.|+++++||+++.+ ++..+... .-..+++.|.
T Consensus 326 l~DPR~~~g-s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-----~DKvl~vdW~- 398 (423)
T KOG0313|consen 326 LWDPRTGDG-SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-----NDKVLSVDWN- 398 (423)
T ss_pred ecCCCCCCC-ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-----CceEEEEecc-
Confidence 999999742 234456679999999999999 55678999999999999999876 77776432 2245667786
Q ss_pred CCCEEEEEcCCCcEEEEcCC
Q 009380 472 DDSCVFIGNMTRTVEVISPA 491 (536)
Q Consensus 472 ~g~~l~~gs~dg~I~v~d~~ 491 (536)
++.+|++|+.|..|+|+...
T Consensus 399 ~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 399 EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCceEEeccCcceEEEeccc
Confidence 46699999999999998643
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-31 Score=259.74 Aligned_cols=283 Identities=18% Similarity=0.246 Sum_probs=243.7
Q ss_pred ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEE
Q 009380 230 ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRL 309 (536)
Q Consensus 230 ~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~v 309 (536)
+..++.+|-+|.||| ...+++++-.+|+|.||+.++ ...+..+.-..-+|.+..|-+.. +++++|+.|..|+|
T Consensus 9 ~~~rSdRVKsVd~HP--tePw~la~LynG~V~IWnyet----qtmVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHP--TEPWILAALYNGDVQIWNYET----QTMVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRV 81 (794)
T ss_pred hhccCCceeeeecCC--CCceEEEeeecCeeEEEeccc----ceeeeeeeecccchhhheeeecc-ceEEEecCCceEEE
Confidence 345889999999999 889999999999999999998 78888998889999999999987 99999999999999
Q ss_pred EECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC-ccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380 310 MDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR-KSATEWLLHEARINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 310 wd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s 387 (536)
|+.+++... .+..|..-|.+++.+|.. -++++++.|-+|++||.... .+.+++.+|...|.+|+|+|.+++.||+++
T Consensus 82 fnynt~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 82 FNYNTGEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred EecccceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 999997655 455799999999999998 59999999999999999865 568899999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee
Q 009380 388 TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF 465 (536)
Q Consensus 388 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 465 (536)
.|++|+||.+.... ....+.+|...|+++.|-+ +..+|++|+.|.+|+|||..+..++.++..+.. .++.
T Consensus 161 LDrTVKVWslgs~~----~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~---Nvs~- 232 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPH----PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN---NVSF- 232 (794)
T ss_pred ccccEEEEEcCCCC----CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc---cceE-
Confidence 99999999998743 5566779999999999998 446999999999999999999999998853222 1232
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEE
Q 009380 466 RAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 532 (536)
Q Consensus 466 ~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~i 532 (536)
+.|+|.-.++++|+.||+|+||+..+.++..++.-....+. ++..++.+ +.++.|.+.|.|.|
T Consensus 233 -v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW--~I~~~k~~-~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 233 -VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVW--CIAAHKGD-GKIAVGFDEGSVTV 295 (794)
T ss_pred -EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEE--EEeecCCC-CeEEEeccCCcEEE
Confidence 67899999999999999999999999887777765444443 45666644 67888888887754
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-31 Score=265.71 Aligned_cols=283 Identities=14% Similarity=0.184 Sum_probs=232.0
Q ss_pred ccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc-ccccccCCceEEEEEEecCCccEEEEEeCCCc
Q 009380 181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRMVVAGSKLGN 259 (536)
Q Consensus 181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~ 259 (536)
.....|..+.|.|.--.+.. +-.+|.|+|||...... .....|.++|..++||| .+.++++|+.|-.
T Consensus 7 skSsRvKglsFHP~rPwILt----------slHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~--~qplFVSGGDDyk 74 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILT----------SLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHP--TQPLFVSGGDDYK 74 (1202)
T ss_pred cccccccceecCCCCCEEEE----------eecCceeeeehhhhhhHHhhhhccCCccceeeecC--CCCeEEecCCccE
Confidence 34467788899999887773 46788999999865432 33567999999999999 9999999999999
Q ss_pred EEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEEEecCCCCC
Q 009380 260 ITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVN 338 (536)
Q Consensus 260 v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~ 338 (536)
|+||+..+ ..++.++.+|-..|..+.|++.- .+|+|+|.|.+|+||+..+..++. +.+|...|.|..|+|.. .
T Consensus 75 IkVWnYk~----rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE-D 148 (1202)
T KOG0292|consen 75 IKVWNYKT----RRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE-D 148 (1202)
T ss_pred EEEEeccc----ceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc-c
Confidence 99999998 89999999999999999999998 999999999999999999987664 55899999999999987 7
Q ss_pred EEEEEECCCeEEEEECCCCc---------------------------c--ceeEeccCCCeEEEEEecCCCCEEEEEeCC
Q 009380 339 TLYFGEGQGGLNIWDVRSRK---------------------------S--ATEWLLHEARINTIDFNPRNPNIMATSSTD 389 (536)
Q Consensus 339 ~l~~g~~dg~i~i~d~~~~~---------------------------~--~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d 389 (536)
++++++.|-+|++||+..-+ . -+.+.+|...|+-++|+|.-+ ++++|+.|
T Consensus 149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DD 227 (1202)
T KOG0292|consen 149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADD 227 (1202)
T ss_pred eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCc
Confidence 99999999999999975210 0 134568999999999999875 99999999
Q ss_pred CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEE
Q 009380 390 GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIW 469 (536)
Q Consensus 390 g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (536)
+.|++|.+...+ .-.+-...+|.+.|.++-|+|..++|++.|.|++|+|||+...+.+.++++.+.. .++ ++-
T Consensus 228 RqVKlWrmnetK--aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendR---FW~--laa 300 (1202)
T KOG0292|consen 228 RQVKLWRMNETK--AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDR---FWI--LAA 300 (1202)
T ss_pred ceeeEEEecccc--ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCe---EEE--EEe
Confidence 999999988643 2233345589999999999999999999999999999999999999888765432 233 334
Q ss_pred cCCCCEEEEEcCCCcEEEEcC
Q 009380 470 GWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 470 s~~g~~l~~gs~dg~I~v~d~ 490 (536)
+|..+++++|- |+.+.||.+
T Consensus 301 hP~lNLfAAgH-DsGm~VFkl 320 (1202)
T KOG0292|consen 301 HPELNLFAAGH-DSGMIVFKL 320 (1202)
T ss_pred cCCcceeeeec-CCceEEEEE
Confidence 66666655553 333444444
No 52
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.1e-32 Score=244.48 Aligned_cols=288 Identities=19% Similarity=0.233 Sum_probs=243.4
Q ss_pred cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC----CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380 233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE----DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR 308 (536)
Q Consensus 233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~----~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~ 308 (536)
....+-|..|+| ||.+|++|+.||-|.+|+..++... .+..-.|.-|..+|.|+.|+.|. ..|++|+.||.|+
T Consensus 212 ~KSh~EcA~FSP--DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIK 288 (508)
T KOG0275|consen 212 QKSHVECARFSP--DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIK 288 (508)
T ss_pred cccchhheeeCC--CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEE
Confidence 356788999999 9999999999999999999874321 12223455688999999999998 9999999999999
Q ss_pred EEECCCCeEEEee--cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380 309 LMDAEKEVFDLVY--SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386 (536)
Q Consensus 309 vwd~~~~~~~~~~--~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~ 386 (536)
+|.+++|.+...+ .|...|+|+.|+.++ ..+++++.|.++++.-+.+|+++..+.+|...|+...|.++| +.++++
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG-~~iisa 366 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDG-HHIISA 366 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCC-CeEEEe
Confidence 9999999887666 488999999999998 788999999999999999999999999999999999999988 799999
Q ss_pred eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC-CCceeee
Q 009380 387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ-TGRWISS 464 (536)
Q Consensus 387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~~ 464 (536)
+.||+|++|+..+.++. ......+...+|+++..-| +...+++|...++|.|.++. ++.+..+..... .+..+.
T Consensus 367 SsDgtvkvW~~KtteC~--~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~- 442 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECL--STFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFIN- 442 (508)
T ss_pred cCCccEEEecCcchhhh--hhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEE-
Confidence 99999999999986532 2223335678899999888 66789999999999999984 555666643333 333333
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 465 FRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 465 ~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
++.+|.|.++++.+.|+.++.|.+.+|..-.++.-|...++ .++.||+. +.||+=+.||.+++|.
T Consensus 443 --~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvI--Gl~HHPHq-NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 443 --AILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVI--GLTHHPHQ-NLLASYSEDGLLKLWK 507 (508)
T ss_pred --EEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccccc--ccccCccc-chhhhhcccchhhhcC
Confidence 67899999999999999999999999998888887776665 67889976 9999999999999996
No 53
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5.9e-32 Score=234.67 Aligned_cols=286 Identities=17% Similarity=0.206 Sum_probs=247.0
Q ss_pred ccccccCCceEEEEEEec-CCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 228 NIARIMPGRITQMKFLPC-SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 228 ~~~~~~~~~I~~v~~~p~-~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
.+..+|..+|..++|+|. .+|-+|+++++||.-.+-+-++ +.-+-+|.+|.+.|+....+.+. ..-++++.|-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t----gdwigtfeghkgavw~~~l~~na-~~aasaaadft 82 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT----GDWIGTFEGHKGAVWSATLNKNA-TRAASAAADFT 82 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC----CCcEEeeeccCcceeeeecCchh-hhhhhhcccch
Confidence 446889999999999973 4788999999999988877777 78899999999999999998887 78899999999
Q ss_pred EEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc-cceeEeccCCCeEEEEEecCCCCEEEE
Q 009380 307 IRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWLLHEARINTIDFNPRNPNIMAT 385 (536)
Q Consensus 307 I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~i~~~p~~~~~l~s 385 (536)
-++||.-++.....+.|..-|.+++|+.+. +.|++|+.+.-++|||++..+ +...+.+|.+.|..+.|+... +.|++
T Consensus 83 akvw~a~tgdelhsf~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD-~~iLS 160 (334)
T KOG0278|consen 83 AKVWDAVTGDELHSFEHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHED-KCILS 160 (334)
T ss_pred hhhhhhhhhhhhhhhhhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccC-ceEEe
Confidence 999999999988899999999999999998 899999999999999998765 467888999999999999855 78888
Q ss_pred EeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee
Q 009380 386 SSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF 465 (536)
Q Consensus 386 ~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 465 (536)
++.|++|++||.+++. .........+|+++.++++|.+| |....+.|.+||..+...+..+.... .+-
T Consensus 161 Sadd~tVRLWD~rTgt-----~v~sL~~~s~VtSlEvs~dG~il-Tia~gssV~Fwdaksf~~lKs~k~P~------nV~ 228 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGT-----EVQSLEFNSPVTSLEVSQDGRIL-TIAYGSSVKFWDAKSFGLLKSYKMPC------NVE 228 (334)
T ss_pred eccCCceEEEEeccCc-----EEEEEecCCCCcceeeccCCCEE-EEecCceeEEeccccccceeeccCcc------ccc
Confidence 8999999999999974 45556678899999999999855 55667789999999988877664332 222
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEcCCccccceec-cCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 466 RAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATL-QSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 466 ~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l-~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
.+..+|+...+++|+.|..++.||..+++.+..+ ++|+..+. ++.|+| +|...++|+.||+|+||..
T Consensus 229 SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVh--cVrFSP-dGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 229 SASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVH--CVRFSP-DGELYASGSEDGTIRLWQT 296 (334)
T ss_pred cccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceE--EEEECC-CCceeeccCCCceEEEEEe
Confidence 2667899999999999999999999999998886 66666655 578888 7899999999999999975
No 54
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-31 Score=264.64 Aligned_cols=284 Identities=18% Similarity=0.270 Sum_probs=237.4
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
+.+|-.++||| ...+|+++-..|.|++||..- +..+..|..|.++|..++|+|+. .+++||+.|-.|+||+..
T Consensus 9 SsRvKglsFHP--~rPwILtslHsG~IQlWDYRM----~tli~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 9 SSRVKGLSFHP--KRPWILTSLHSGVIQLWDYRM----GTLIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred cccccceecCC--CCCEEEEeecCceeeeehhhh----hhHHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEecc
Confidence 56789999999 999999999999999999997 78899999999999999999998 999999999999999999
Q ss_pred CCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380 314 KEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTA 392 (536)
Q Consensus 314 ~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i 392 (536)
+.++. .+.+|-..|..+.|++.- -.+++++.|-+|+||+..+++++..+.+|...|.|..|+|.. .+++++|.|.+|
T Consensus 82 ~rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTV 159 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTV 159 (1202)
T ss_pred cceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc-ceEEEecccceE
Confidence 87765 456899999999999998 589999999999999999999999999999999999999966 699999999999
Q ss_pred EEEeCCCCCCCCC-------------------------CcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 009380 393 CIWDLRSMATDKP-------------------------EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE 447 (536)
Q Consensus 393 ~iwdl~~~~~~~~-------------------------~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~ 447 (536)
+|||+.....+.. ....+.+|...|+-++|+|.-.+|++|+.|..|++|.+...+
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence 9999875432110 011234799999999999999999999999999999986433
Q ss_pred cc---eEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEE
Q 009380 448 NT---SMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA 524 (536)
Q Consensus 448 ~~---~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasg 524 (536)
-- ....|.+ .+++ +.|+|....+++.+.|+.|+|||+...+.++++.-.+..-+ .++.||. .+++|.|
T Consensus 240 aWEvDtcrgH~n----nVss--vlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW--~laahP~-lNLfAAg 310 (1202)
T KOG0292|consen 240 AWEVDTCRGHYN----NVSS--VLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW--ILAAHPE-LNLFAAG 310 (1202)
T ss_pred ceeehhhhcccC----Ccce--EEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE--EEEecCC-cceeeee
Confidence 21 1112322 2333 77999999999999999999999999999999976555444 6788994 4666665
Q ss_pred ccCCeEEEEecC
Q 009380 525 TGGGQVYVWTSD 536 (536)
Q Consensus 525 s~Dg~v~iW~~d 536 (536)
- |+-+.||.++
T Consensus 311 H-DsGm~VFkle 321 (1202)
T KOG0292|consen 311 H-DSGMIVFKLE 321 (1202)
T ss_pred c-CCceEEEEEc
Confidence 5 4556666553
No 55
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=3.5e-31 Score=236.50 Aligned_cols=295 Identities=18% Similarity=0.246 Sum_probs=245.7
Q ss_pred ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCC--------------CCCCCceEEeccCCCCEEEEEEecC
Q 009380 228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQ--------------QDEDNGIYLFRTHLGPISGIVTQQY 293 (536)
Q Consensus 228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~--------------~~~~~~~~~~~~h~~~V~~l~~~~~ 293 (536)
..+..|.+.+.+.+|+| ||.++|+|+.|-.|+|.|++.. +.....++++-.|...|+++.|+|.
T Consensus 106 ~ylt~HK~~cR~aafs~--DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSP--DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred EEEeecccceeeeeeCC--CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 34578999999999999 9999999999999999998710 1113567889999999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeE---EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE---eccC
Q 009380 294 CLSKIFTSCYDGLIRLMDAEKEVF---DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW---LLHE 367 (536)
Q Consensus 294 ~~~~l~s~s~dg~I~vwd~~~~~~---~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---~~h~ 367 (536)
. ..|++++.|++|++||+.+... ...+....+|.++.|+|.| .+|++|+....+++||+.+.++...- ..|.
T Consensus 184 e-~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 184 E-TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred h-heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 8 9999999999999999987533 2345566899999999999 89999999999999999998774332 3799
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--cc-cCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380 368 ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SH-KRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 368 ~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~-~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~ 444 (536)
+.|++|.+++.+ .+.++|+.||.|++||--++. ++... .| ...|.++.|..+|+||++.+.|..+++|.+.
T Consensus 262 ~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~r-----Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 262 GAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNR-----CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred cceeEEEecCCc-cEEEEeccCCcEEeeccccHH-----HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 999999999977 799999999999999977643 33333 34 4579999999999999999999999999999
Q ss_pred CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC-CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEE
Q 009380 445 NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM-TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG 523 (536)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~-dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las 523 (536)
++..+..+.....+++......+.|+....|++.-.. .+.+.-||.++...+..+...|.+.+.+ +..+|. +..+++
T Consensus 336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~-i~HSP~-~p~FmT 413 (430)
T KOG0640|consen 336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRW-IVHSPV-EPAFMT 413 (430)
T ss_pred CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceE-EEeCCC-CCceee
Confidence 9999988876655666555556788888888776644 3779999999998888888777777644 556674 589999
Q ss_pred EccCCeEEEEe
Q 009380 524 ATGGGQVYVWT 534 (536)
Q Consensus 524 gs~Dg~v~iW~ 534 (536)
|+.|-.+++|-
T Consensus 414 csdD~raRFWy 424 (430)
T KOG0640|consen 414 CSDDFRARFWY 424 (430)
T ss_pred ecccceeeeee
Confidence 99999999995
No 56
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.4e-29 Score=226.41 Aligned_cols=293 Identities=18% Similarity=0.264 Sum_probs=237.2
Q ss_pred CccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC-
Q 009380 225 KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY- 303 (536)
Q Consensus 225 ~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~- 303 (536)
++..+.+...+.|+++.|++ +|.+|++++.|.+++|||..+ +..+.++..+.-.|..++|.... +.++.++.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~--~G~~litss~dDsl~LYd~~~----g~~~~ti~skkyG~~~~~Fth~~-~~~i~sStk 77 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSD--DGLLLITSSEDDSLRLYDSLS----GKQVKTINSKKYGVDLACFTHHS-NTVIHSSTK 77 (311)
T ss_pred ccccccccCCCceeEEEecC--CCCEEEEecCCCeEEEEEcCC----CceeeEeecccccccEEEEecCC-ceEEEccCC
Confidence 34445555778999999999 999999999999999999998 78888888888889999998776 66776666
Q ss_pred -CCeEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCC
Q 009380 304 -DGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPN 381 (536)
Q Consensus 304 -dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~ 381 (536)
|.+|+..++.+.+....+ +|...|.+|+.+|-+ ..+++++.|++|++||++..++...+.....+ .++|.|+| -
T Consensus 78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~G-L 153 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEG-L 153 (311)
T ss_pred CCCceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCC-c
Confidence 899999999998877665 789999999999998 89999999999999999988887766543333 47899988 7
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCc
Q 009380 382 IMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGR 460 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 460 (536)
++|++.....|++||+|...........+. ......+.+.|+|+|++|+.++..+.+++.|.-++.....+......+.
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~ 233 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN 233 (311)
T ss_pred EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence 888888777999999998753222222222 3467889999999999999999999999999999988877754333222
Q ss_pred eeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 461 WISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 461 ~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
..+.++|+||++++++|+.||+|.+|++.++..+..+.+.+...+ ..+.|+|. ..+++++ +..+.+|-
T Consensus 234 --~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~-~~~~fnP~-~~mf~sa--~s~l~fw~ 301 (311)
T KOG1446|consen 234 --LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPV-SCVRFNPR-YAMFVSA--SSNLVFWL 301 (311)
T ss_pred --cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCc-cccccCCc-eeeeeec--CceEEEEe
Confidence 225588999999999999999999999999999999998755555 34679883 2455554 45788884
No 57
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3e-31 Score=266.82 Aligned_cols=253 Identities=16% Similarity=0.211 Sum_probs=209.4
Q ss_pred cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCC--------------------------------CCC--------
Q 009380 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDS--------------------------------QQD-------- 270 (536)
Q Consensus 231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~--------------------------------~~~-------- 270 (536)
..|.+.|+++.|++ ||+|||+|+.||.|+||.+.. ...
T Consensus 264 ~ah~gaIw~mKFS~--DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSH--DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccCCcEEEEEeCC--CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 38999999999999 999999999999999998865 000
Q ss_pred ----------------CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380 271 ----------------EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQP 334 (536)
Q Consensus 271 ----------------~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~ 334 (536)
...++..|.+|.+.|.+|.|+.+ ++|+++|.|.+|++|++....+..++.|..-|+|++|+|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnP 419 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNP 419 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecc
Confidence 12344567899999999999987 699999999999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee---
Q 009380 335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--- 411 (536)
Q Consensus 335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--- 411 (536)
.+.++|++|+.||.|+||++...+.+.-.. -..-|++++|.|+| +..+.|+.+|.+++|+....+......+...
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 999999999999999999998776554444 45899999999997 7999999999999999987642111111111
Q ss_pred --cccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380 412 --SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488 (536)
Q Consensus 412 --~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~ 488 (536)
.|. .|+.+.|.| +...+++.+.|..|+|||.++...+..+......... +.+.|+.||++|++++.|..|+||
T Consensus 498 k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ---~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 498 KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQ---ISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcc---eeeeEccCCCEEEEeecCceEEEE
Confidence 133 899999998 4446888899999999999888888888644333332 347899999999999999999999
Q ss_pred cCCcc
Q 009380 489 SPAQR 493 (536)
Q Consensus 489 d~~~~ 493 (536)
+....
T Consensus 574 ~~~~~ 578 (712)
T KOG0283|consen 574 KNDSF 578 (712)
T ss_pred eCCCC
Confidence 97443
No 58
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.98 E-value=1.2e-30 Score=247.51 Aligned_cols=297 Identities=19% Similarity=0.245 Sum_probs=229.9
Q ss_pred cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEECCC
Q 009380 227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCYDG 305 (536)
Q Consensus 227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg 305 (536)
+..++.|...|+++++.| .|..|++|+.|.+|++||+............+. .....|.++.|++.+ ..|++.+...
T Consensus 160 Ei~l~hgtk~Vsal~~Dp--~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg-~~iLvvsg~a 236 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDP--SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG-DQILVVSGSA 236 (641)
T ss_pred eEeccCCceEEEEeeecC--CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC-CeEEEEecCc
Confidence 444677889999999999 999999999999999999986432222222222 234579999999999 8888888888
Q ss_pred eEEEEECCCCeEE-------------EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEe-----cc
Q 009380 306 LIRLMDAEKEVFD-------------LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWL-----LH 366 (536)
Q Consensus 306 ~I~vwd~~~~~~~-------------~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~-----~h 366 (536)
..+|+|-..-... ...+|...++|-+|+|.....+++++.||+++|||+...+. +..+. +.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 9999998764332 23368889999999999989999999999999999986543 33333 23
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC--ceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380 367 EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR--AVHSAYFSPSGSSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 367 ~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~--~v~~l~~sp~g~~l~t~s~dg~I~iwd~~ 444 (536)
.-.+++++|+|++ .+||+|+.||.|.+||.+... ..+.......|.. .|+||.||++|++|++-+.|+++++||++
T Consensus 317 Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 317 RVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred ccCceeeecCCCc-chhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 3468899999998 689999999999999986643 1222223336777 99999999999999999999999999999
Q ss_pred CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC------CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCC
Q 009380 445 NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQV 518 (536)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~------dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~ 518 (536)
+.+..........+. .....++|||+.++|++|+. .|.+.+||..+.+.++++.-...+++ .+.|||.-
T Consensus 395 q~kkpL~~~tgL~t~--~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv--~~~WhpkL- 469 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTP--FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVV--RCLWHPKL- 469 (641)
T ss_pred ccccchhhhcCCCcc--CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEE--EEeecchh-
Confidence 876543332221111 12234889999999999854 36799999999999998876544444 67999954
Q ss_pred CEEEEEccCCeEEEE
Q 009380 519 GTLAGATGGGQVYVW 533 (536)
Q Consensus 519 ~~lasgs~Dg~v~iW 533 (536)
++|..|+.||.++||
T Consensus 470 NQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 470 NQIFAGSGDGTAHVY 484 (641)
T ss_pred hheeeecCCCceEEE
Confidence 888888999999986
No 59
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=4.1e-30 Score=253.96 Aligned_cols=331 Identities=18% Similarity=0.188 Sum_probs=269.0
Q ss_pred ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc-ccccccCCceEEEEEEecCCccEEEE
Q 009380 175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRMVVA 253 (536)
Q Consensus 175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~l~t 253 (536)
.-.++.||...|.++.|+..|..++ +++.|+.|.+||+..+.. ..+++|.+.|+..-|.. +.++|++
T Consensus 99 ~~~tfngHK~AVt~l~fd~~G~rla----------SGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~--~~~~lvS 166 (888)
T KOG0306|consen 99 ILITFNGHKAAVTTLKFDKIGTRLA----------SGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN--GDSFLVS 166 (888)
T ss_pred eeeeecccccceEEEEEcccCceEe----------ecCCCccEEEEEeccceeeEEeecchHHHhHHhccC--CCeEEEE
Confidence 4457889999999999999999999 569999999999855443 34689999999999998 7899999
Q ss_pred EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC----------------CeE
Q 009380 254 GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK----------------EVF 317 (536)
Q Consensus 254 g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~----------------~~~ 317 (536)
.++|+.|++||+.+ ..+..+...|.+.|+.+++.+ +.+++++.|+.+.+|++.. |.+
T Consensus 167 ~sKDs~iK~WdL~t----qhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 167 VSKDSMIKFWDLET----QHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred eccCceEEEEeccc----ceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence 99999999999998 789999999999999999987 6899999999999999810 000
Q ss_pred --------------------------------------------------------------------------------
Q 009380 318 -------------------------------------------------------------------------------- 317 (536)
Q Consensus 318 -------------------------------------------------------------------------------- 317 (536)
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence
Q ss_pred -----------------------------------------------EEeecCCCceeEEEecCCCCCEEEEEECCCeEE
Q 009380 318 -----------------------------------------------DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLN 350 (536)
Q Consensus 318 -----------------------------------------------~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~ 350 (536)
....+|...|.+++++.+. .++..+..+.|.
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~--~~~~Sga~~Sik 397 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS--ILLASGAGESIK 397 (888)
T ss_pred hhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc--eeeeecCCCcEE
Confidence 0011355567888888775 455555567999
Q ss_pred EEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEE
Q 009380 351 IWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLA 430 (536)
Q Consensus 351 i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 430 (536)
+|+..+.++++++.. +.+.+.+|.| |..++++|...|.+.+||+.+.. .+-.+..|.+.|++++.+||+..++
T Consensus 398 iWn~~t~kciRTi~~--~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~----l~Eti~AHdgaIWsi~~~pD~~g~v 470 (888)
T KOG0306|consen 398 IWNRDTLKCIRTITC--GYILASKFVP-GDRYIVLGTKNGELQVFDLASAS----LVETIRAHDGAIWSISLSPDNKGFV 470 (888)
T ss_pred EEEccCcceeEEecc--ccEEEEEecC-CCceEEEeccCCceEEEEeehhh----hhhhhhccccceeeeeecCCCCceE
Confidence 999999999999874 3889999999 44899999999999999999853 4445558999999999999999999
Q ss_pred EEeCCCcEEEEeCCC-----CC--cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCc
Q 009380 431 TTSFDDTIGIWSGVN-----FE--NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY 503 (536)
Q Consensus 431 t~s~dg~I~iwd~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~ 503 (536)
|+|.|.+|++||..- +. ....+.|.....-.-.++++.+||||++|+++--|++|+||-+++.+..-.+.+|.
T Consensus 471 T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHk 550 (888)
T KOG0306|consen 471 TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK 550 (888)
T ss_pred EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccc
Confidence 999999999999641 11 11222222211112234668899999999999999999999999999888999988
Q ss_pred eeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 504 ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 504 ~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
-.+.+. ..+| |+.+++|||.|..|+||-+|
T Consensus 551 LPV~sm--DIS~-DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 551 LPVLSM--DISP-DSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred cceeEE--eccC-CcCeEEeccCCCceEEeccc
Confidence 887754 4455 67999999999999999775
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-30 Score=226.12 Aligned_cols=266 Identities=23% Similarity=0.338 Sum_probs=216.1
Q ss_pred cccceEEecccccCccccc----cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380 212 EVGSCVDIGSLTLKPENIA----RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISG 287 (536)
Q Consensus 212 ~~dg~v~lw~~~~~~~~~~----~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~ 287 (536)
...|.+.|-++. ++..+. ....+.++.|+|+++ ..+.+++++.||.++|||+... ..++..++.|...|.+
T Consensus 35 ~G~G~L~ile~~-~~~gi~e~~s~d~~D~LfdV~Wse~-~e~~~~~a~GDGSLrl~d~~~~---s~Pi~~~kEH~~EV~S 109 (311)
T KOG0277|consen 35 AGNGRLFILEVT-DPKGIQECQSYDTEDGLFDVAWSEN-HENQVIAASGDGSLRLFDLTMP---SKPIHKFKEHKREVYS 109 (311)
T ss_pred ccCceEEEEecC-CCCCeEEEEeeecccceeEeeecCC-CcceEEEEecCceEEEeccCCC---CcchhHHHhhhhheEE
Confidence 344678877764 222221 123789999999996 4578888899999999997653 5789999999999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEECCCCeE-EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc
Q 009380 288 IVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH 366 (536)
Q Consensus 288 l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h 366 (536)
+.|++.....++++|.|++|++|+...+.. ....+|...|....|+|..++++++++.||++++||++.......+..|
T Consensus 110 vdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah 189 (311)
T KOG0277|consen 110 VDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH 189 (311)
T ss_pred eccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEec
Confidence 999998768899999999999999887654 4455789999999999999999999999999999999976555558899
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCC
Q 009380 367 EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 367 ~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~ 445 (536)
...|.|+.|+.-+.++++||+.|+.|++||+|+.+ ..+..+.+|...|..+.||| ....|+++++|-+++|||...
T Consensus 190 ~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 190 NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER 266 (311)
T ss_pred cceeEeecccccCCcEEEecCCCceEEEEehhhcc---ccceeecCCceEEEEEecCcchhhHhhhccccceEEeccccc
Confidence 99999999999888999999999999999999975 34566679999999999999 457899999999999999874
Q ss_pred CC-cceEEeccCCCCceeeeeEEEEcC-CCCEEEEEcCCCcEEEEcC
Q 009380 446 FE-NTSMIHHNNQTGRWISSFRAIWGW-DDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 446 ~~-~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~~gs~dg~I~v~d~ 490 (536)
.. .+.+..++.. .+. .+.|++ ++.++++.+.|..++||+.
T Consensus 267 ~ds~~e~~~~HtE---Fv~--g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 267 QDSAIETVDHHTE---FVC--GLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred chhhhhhhhccce---EEe--ccccccccCceeeecccccceeeecc
Confidence 43 3333333221 222 244655 5678999999999999984
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2e-31 Score=241.40 Aligned_cols=275 Identities=14% Similarity=0.207 Sum_probs=222.8
Q ss_pred cccceeeeecCCCCcccccccccccccccccccceEEeccccc-CccccccccCCceEEEEEEecCCccEEEEEeCCCcE
Q 009380 182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL-KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNI 260 (536)
Q Consensus 182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~-~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v 260 (536)
..++|.|+++.. + ++.++..|++|.+||... ....++.+|.+.|.|+.| +.+.|++|+.|.+|
T Consensus 196 ~skgVYClQYDD-~-----------kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy----d~rviisGSSDsTv 259 (499)
T KOG0281|consen 196 NSKGVYCLQYDD-E-----------KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY----DERVIVSGSSDSTV 259 (499)
T ss_pred cCCceEEEEecc-h-----------hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec----cceEEEecCCCceE
Confidence 446666666542 2 234567889999999743 344567899999999999 45799999999999
Q ss_pred EEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE----EEeecCCCceeEEEecCCC
Q 009380 261 TFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF----DLVYSSEYAVFSLSQQPNN 336 (536)
Q Consensus 261 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~----~~~~~~~~~i~~l~~~~~~ 336 (536)
+|||+++ +.++.++.+|...|..+.|+. .+++++|.|.+|.+||+....- ..+.+|...|..+.|+.
T Consensus 260 rvWDv~t----ge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~-- 330 (499)
T KOG0281|consen 260 RVWDVNT----GEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD-- 330 (499)
T ss_pred EEEeccC----CchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--
Confidence 9999999 889999999999999999985 6999999999999999987542 23457889999999974
Q ss_pred CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCc
Q 009380 337 VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRA 416 (536)
Q Consensus 337 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~ 416 (536)
.++++++.|.+|++|++.+++.++++.+|...|-|+.+. + .++++|+.|.+|++||+..+. ....+.+|..-
T Consensus 331 -kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~----cLRvLeGHEeL 402 (499)
T KOG0281|consen 331 -KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA----CLRVLEGHEEL 402 (499)
T ss_pred -ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--C-eEEEecCCCceEEEEeccccH----HHHHHhchHHh
Confidence 599999999999999999999999999999999999886 3 799999999999999999874 44455699999
Q ss_pred eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE------eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380 417 VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI------HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 417 v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
|.++.|+ .+.|++|++||+|+|||+......... .+..... -..|++.| |...+++++.|.+|.|||.
T Consensus 403 vRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hs--gRVFrLQF--D~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 403 VRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS--GRVFRLQF--DEFQIISSSHDDTILIWDF 476 (499)
T ss_pred hhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhcc--ceeEEEee--cceEEEeccCCCeEEEEEc
Confidence 9999995 677999999999999999765433211 1111111 13445556 4457999999999999999
Q ss_pred Ccccc
Q 009380 491 AQRRS 495 (536)
Q Consensus 491 ~~~~~ 495 (536)
..+-.
T Consensus 477 l~~~~ 481 (499)
T KOG0281|consen 477 LNGPP 481 (499)
T ss_pred CCCCc
Confidence 87643
No 62
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1e-29 Score=232.15 Aligned_cols=289 Identities=12% Similarity=0.107 Sum_probs=237.7
Q ss_pred cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
...+..|.+.|++++.+| +.++++||+.|..-.||++.+ +.....+.+|...|+++.|+.++ .+|+||+.+|.
T Consensus 57 ~~tF~~H~~svFavsl~P--~~~l~aTGGgDD~AflW~~~~----ge~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~ 129 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHP--NNNLVATGGGDDLAFLWDIST----GEFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGK 129 (399)
T ss_pred eeehhhcCCceEEEEeCC--CCceEEecCCCceEEEEEccC----CcceeEecCCCCceEEEEEccCc-eEEEecCCCcc
Confidence 344688999999999999 899999999999999999998 67888999999999999999999 99999999999
Q ss_pred EEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEE
Q 009380 307 IRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMAT 385 (536)
Q Consensus 307 I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s 385 (536)
|+||...++.....+ ..-..|.-+.|+|.+ .+|++|+.||.|.+|.+.++...+.+.+|..++++=.|.|+| ..+++
T Consensus 130 v~v~~~stg~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG-Kr~~t 207 (399)
T KOG0296|consen 130 VLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDG-KRILT 207 (399)
T ss_pred EEEEEcccCceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCC-ceEEE
Confidence 999999988665444 356788999999987 899999999999999999988888999999999999999998 68999
Q ss_pred EeCCCcEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC--------
Q 009380 386 SSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN-------- 456 (536)
Q Consensus 386 ~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~-------- 456 (536)
+..||+|++|++.++. ....+. .......++.++..+..++.|+.++.+++-+..+++.+.......
T Consensus 208 gy~dgti~~Wn~ktg~----p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e 283 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQ----PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQE 283 (399)
T ss_pred EecCceEEEEecCCCc----eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccch
Confidence 9999999999999974 333332 234567888999999999999999999998877776554442100
Q ss_pred CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 457 QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 457 ~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
.....+. .+.|+..-.+.|+|+.||+|.|||....+....+. |...+ +.+.|.+ . .+|++++.+|.|++||.
T Consensus 284 ~~~esve--~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V--~~l~w~~-t-~~l~t~c~~g~v~~wDa 355 (399)
T KOG0296|consen 284 ELDESVE--SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGV--TKLKWLN-T-DYLLTACANGKVRQWDA 355 (399)
T ss_pred hhhhhhh--hcccccccchhhcccccceEEEEecccchhheecc-CCCce--EEEEEcC-c-chheeeccCceEEeeec
Confidence 0001111 13456666789999999999999999886665554 33333 4678876 3 79999999999999995
No 63
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.3e-31 Score=239.61 Aligned_cols=282 Identities=15% Similarity=0.279 Sum_probs=233.0
Q ss_pred ccccCCceEEEEEEecCCc-cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380 230 ARIMPGRITQMKFLPCSDV-RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR 308 (536)
Q Consensus 230 ~~~~~~~I~~v~~~p~~~~-~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~ 308 (536)
+.+|.+.|.|++=+| .. ..+++|+.||.|+|||+.. ..+..++..|.+.|..|++.. ..+++++.|.+|+
T Consensus 62 L~gHrdGV~~lakhp--~~ls~~aSGs~DG~VkiWnlsq----R~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHP--NKLSTVASGSCDGEVKIWNLSQ----RECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVK 132 (433)
T ss_pred ccccccccchhhcCc--chhhhhhccccCceEEEEehhh----hhhhheeecccCceeeEEecc---cceEEecCCccee
Confidence 478999999999999 54 7899999999999999997 788999999999999999987 5699999999999
Q ss_pred EEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC
Q 009380 309 LMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST 388 (536)
Q Consensus 309 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~ 388 (536)
.|.++.. ....+..+..+..|..+..+ +.+++++. .|.|||.....++..+.--.+.|.++.|+|-...+|++|+.
T Consensus 133 ~wk~~~~-p~~tilg~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s 208 (433)
T KOG0268|consen 133 QWKIDGP-PLHTILGKSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS 208 (433)
T ss_pred eeeccCC-cceeeecccccccccccccc-ccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeecc
Confidence 9998874 55555667778888887766 67888776 59999999889999998778899999999988889999999
Q ss_pred CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEE
Q 009380 389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAI 468 (536)
Q Consensus 389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (536)
|+.|.+||+|... ++........-+.|+|+|.+-.|++++.|..++.||++..+....... ++.-..+.+.
T Consensus 209 DrsIvLyD~R~~~-----Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~----dhvsAV~dVd 279 (433)
T KOG0268|consen 209 DRSIVLYDLRQAS-----PLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK----DHVSAVMDVD 279 (433)
T ss_pred CCceEEEecccCC-----ccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhc----ccceeEEEec
Confidence 9999999999964 333333455668899999888899999999999999987765443321 1122456688
Q ss_pred EcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 469 WGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 469 ~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
|||.|+-|++||.|.+|+||....+..-..+....+..+ .++.|+- |..++++||+|+.|++|..
T Consensus 280 fsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V-~~Vk~S~-Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 280 FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHV-FCVKYSM-DSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred cCCCcchhccccccceEEEeecCCCcchhhhhHhhhhee-eEEEEec-cccEEEecCCCcceeeeec
Confidence 999999999999999999999988765544444344444 4566765 6699999999999999974
No 64
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7.3e-31 Score=239.21 Aligned_cols=288 Identities=16% Similarity=0.200 Sum_probs=233.6
Q ss_pred ecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCCccEEEEEeCC
Q 009380 179 IKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMVVAGSKL 257 (536)
Q Consensus 179 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d 257 (536)
|.||.++|.|+.=.|..-..+ ++++.||.|+|||+.... ...++.|.+.|..+++.. ..+++++.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~---------aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdD 128 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTV---------ASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDD 128 (433)
T ss_pred ccccccccchhhcCcchhhhh---------hccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCC
Confidence 689999999999888773322 368999999999996543 445788999999999975 678899999
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-CCCceeEEEecCCC
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-SEYAVFSLSQQPNN 336 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~ 336 (536)
.+|+.|.++ +..+.++.+. ..+..|.-+..+ +.++||+.+ |.|||.+...+...+. ....|.++.|+|..
T Consensus 129 KtvK~wk~~-----~~p~~tilg~-s~~~gIdh~~~~-~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvE 199 (433)
T KOG0268|consen 129 KTVKQWKID-----GPPLHTILGK-SVYLGIDHHRKN-SVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVE 199 (433)
T ss_pred cceeeeecc-----CCcceeeecc-cccccccccccc-ccccccCce--eeecccccCCccceeecCCCceeEEecCCCc
Confidence 999999998 4566666553 456777777666 889999755 8899998776655554 34679999999998
Q ss_pred CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCc
Q 009380 337 VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRA 416 (536)
Q Consensus 337 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~ 416 (536)
..+|++++.|+.|.+||++++.++..+. ..-.-+.|+|+| ....|++|++|..++.||+|... ..+....+|...
T Consensus 200 TsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~---~p~~v~~dhvsA 274 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLS---RPLNVHKDHVSA 274 (433)
T ss_pred chheeeeccCCceEEEecccCCccceee-eeccccceecCc-cccceeeccccccceehhhhhhc---ccchhhccccee
Confidence 8899999999999999999999988776 355668899999 55789999999999999999975 234444589999
Q ss_pred eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccc
Q 009380 417 VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSV 496 (536)
Q Consensus 417 v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~ 496 (536)
|.++.|||.|+-|++||.|.+|+||..+.+.....+ | +.+-..++++.||.|.+|+++||.|+.|++|.....+.+
T Consensus 275 V~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY-h---tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 275 VMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY-H---TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred EEEeccCCCcchhccccccceEEEeecCCCcchhhh-h---HhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 999999999999999999999999999876554443 2 222335667899999999999999999999987655443
Q ss_pred e
Q 009380 497 A 497 (536)
Q Consensus 497 ~ 497 (536)
.
T Consensus 351 g 351 (433)
T KOG0268|consen 351 G 351 (433)
T ss_pred C
Confidence 3
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=241.49 Aligned_cols=284 Identities=18% Similarity=0.188 Sum_probs=239.0
Q ss_pred cceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc---ccccccCCceEEEEEEecCCccEEE
Q 009380 176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE---NIARIMPGRITQMKFLPCSDVRMVV 252 (536)
Q Consensus 176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~---~~~~~~~~~I~~v~~~p~~~~~~l~ 252 (536)
.+.+.-|..+|+.+.|-++...++ ++++|..|.+|+...... ..+.+..+.|+++.|.+ ++..++
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtla----------tgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~--~~~~~i 235 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLA----------TGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS--DNKHVI 235 (459)
T ss_pred hhhhhccccccceeEEccCcchhh----------hcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC--CCceEE
Confidence 456778999999999999988888 668999999999755442 23344567799999999 999999
Q ss_pred EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEe
Q 009380 253 AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQ 332 (536)
Q Consensus 253 tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~ 332 (536)
+++.|+.+++|+++. .....++.+|++.|+++.|.... ..+++|+.|.+|++||+.+..+....-....+..|+.
T Consensus 236 Aas~d~~~r~Wnvd~----~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~ 310 (459)
T KOG0288|consen 236 AASNDKNLRLWNVDS----LRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVC 310 (459)
T ss_pred eecCCCceeeeeccc----hhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccccccccccceEe
Confidence 999999999999998 78889999999999999999886 5699999999999999999888777666677888887
Q ss_pred cCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-
Q 009380 333 QPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL- 411 (536)
Q Consensus 333 ~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~- 411 (536)
.+ ..+++|..|+.|++||+++..+......+. .|+++..++++ ..+++++.|.++.+.|+++.. ....+.
T Consensus 311 ~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~e----I~~~~sA 381 (459)
T KOG0288|consen 311 SI---SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKE----IRQTFSA 381 (459)
T ss_pred cc---eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeeccccc----EEEEeec
Confidence 73 579999999999999999999998888665 99999999977 677778999999999999853 222221
Q ss_pred ---cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380 412 ---SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488 (536)
Q Consensus 412 ---~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~ 488 (536)
......+.+.|||++.|+++||.||.|+||++.+++....+....... .++.+.|+|.|.++++++.++.+.+|
T Consensus 382 ~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~---aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA---AITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCc---ceEEEEEcCCCchhhcccCCcceEec
Confidence 123458899999999999999999999999999998887775433221 34558899999999999999999998
No 66
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=241.18 Aligned_cols=290 Identities=18% Similarity=0.210 Sum_probs=244.1
Q ss_pred cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
..++..|.+.+..+.|-+ +...|++|+.|..|++|++.... ...+.++.+..++|+.+.|.+++ .++++++.|+.
T Consensus 168 ~~~ld~h~gev~~v~~l~--~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~ 242 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLR--NSDTLATGGSDRIIKLWNVLGEK--SELISTLAGSLGNITSIDFDSDN-KHVIAASNDKN 242 (459)
T ss_pred hhhhhccccccceeEEcc--Ccchhhhcchhhhhhhhhcccch--hhhhhhhhccCCCcceeeecCCC-ceEEeecCCCc
Confidence 456688999999999999 87899999999999999998632 34677888888999999999999 99999999999
Q ss_pred EEEEECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEE
Q 009380 307 IRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMAT 385 (536)
Q Consensus 307 I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s 385 (536)
+++|++...... .+.+|...|+++.|.... ..+++|+.|.+|++||+....+..++. ....++.|+..+ ..+++
T Consensus 243 ~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~~---~~~~S 317 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCSI---SDVIS 317 (459)
T ss_pred eeeeeccchhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheecccc-ccccccceEecc---eeeee
Confidence 999999987554 455799999999998876 459999999999999999988877765 456777888763 67999
Q ss_pred EeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC-CCCceeee
Q 009380 386 SSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN-QTGRWISS 464 (536)
Q Consensus 386 ~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~~ 464 (536)
|..|+.|++||.+... +.....-.+.|+++..+++|..|++++.|+++.++|+++.+....+.... ..+.. .
T Consensus 318 gH~DkkvRfwD~Rs~~-----~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD--w 390 (459)
T KOG0288|consen 318 GHFDKKVRFWDIRSAD-----KTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD--W 390 (459)
T ss_pred cccccceEEEeccCCc-----eeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc--c
Confidence 9999999999999853 33334445599999999999999999999999999999988877775332 22222 2
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 465 FRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 465 ~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
.+++|||++.|+++|++||.|+||++.++++...+...+...-..+++|+|. |..|++++.++.+.+|.
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s-G~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS-GSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC-CchhhcccCCcceEecC
Confidence 3488999999999999999999999999999888887666633367899994 69999999999999994
No 67
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.9e-30 Score=244.90 Aligned_cols=253 Identities=16% Similarity=0.187 Sum_probs=215.6
Q ss_pred CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-CeE-EEeecCCCceeEEEecCCCCCEEEEEECCCeE
Q 009380 272 DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-EVF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGL 349 (536)
Q Consensus 272 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-~~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i 349 (536)
...++++.+|+..|+++.|.|....+|++++.|+.|+||++.. +.+ ....+|..+|.+++|+.++ ..+++++.|+.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC-Ceeeeeecceee
Confidence 4577899999999999999994449999999999999999876 444 4556899999999999998 899999999999
Q ss_pred EEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeE
Q 009380 350 NIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSL 429 (536)
Q Consensus 350 ~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 429 (536)
++||+++|+++..+. ....++|+.|+|+++++|++|+.|+.|+.||+|+++ .+.....|-+.|..+.|-++|.++
T Consensus 283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k----vvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK----VVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred eeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH----HHHHHHhhhhheeeeEEccCCceE
Confidence 999999999998887 567789999999999999999999999999999974 444455789999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc---cceeccCCceee
Q 009380 430 ATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR---SVATLQSPYISA 506 (536)
Q Consensus 430 ~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~---~~~~l~~~~~~~ 506 (536)
++++.|++++||+.+..-++..+...... +.-++..+|++.++++-++|+.|.+|.+...- .-..+.+|....
T Consensus 358 issSDdks~riWe~~~~v~ik~i~~~~~h----smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 358 ISSSDDKSVRIWENRIPVPIKNIADPEMH----TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred eeeccCccEEEEEcCCCccchhhcchhhc----cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence 99999999999999887666655322221 22235568999999999999999999875432 335677887778
Q ss_pred eeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 507 IPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 507 ~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
..+.+.|+| ||.+|++|+.||.+.+||-
T Consensus 434 ys~~v~fSp-DG~~l~SGdsdG~v~~wdw 461 (503)
T KOG0282|consen 434 YSCQVDFSP-DGRTLCSGDSDGKVNFWDW 461 (503)
T ss_pred ceeeEEEcC-CCCeEEeecCCccEEEeec
Confidence 888999999 7899999999999999985
No 68
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.5e-29 Score=247.39 Aligned_cols=287 Identities=18% Similarity=0.232 Sum_probs=245.3
Q ss_pred ceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeC
Q 009380 177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSK 256 (536)
Q Consensus 177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~ 256 (536)
..+-||...|..+.++.+...+++. ..+.+.+|+.+.. ..+.....+-+.+..|.| .+.++++|.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sg-----------a~~SikiWn~~t~-kciRTi~~~y~l~~~Fvp--gd~~Iv~G~k 432 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASG-----------AGESIKIWNRDTL-KCIRTITCGYILASKFVP--GDRYIVLGTK 432 (888)
T ss_pred eeeccchhheeEEEeecCceeeeec-----------CCCcEEEEEccCc-ceeEEeccccEEEEEecC--CCceEEEecc
Confidence 3467899999999999999988854 3457888986532 333455567899999999 8999999999
Q ss_pred CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-----C---eE-----EEeecC
Q 009380 257 LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-----E---VF-----DLVYSS 323 (536)
Q Consensus 257 dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-----~---~~-----~~~~~~ 323 (536)
.|.+.+||+.. ...+.+.+.|.+.|+.++.+|++ ..+++||.|.+|++||..- + +. ......
T Consensus 433 ~Gel~vfdlaS----~~l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel 507 (888)
T KOG0306|consen 433 NGELQVFDLAS----ASLVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL 507 (888)
T ss_pred CCceEEEEeeh----hhhhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec
Confidence 99999999998 67778888999999999999999 9999999999999999742 1 11 123345
Q ss_pred CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 009380 324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD 403 (536)
Q Consensus 324 ~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~ 403 (536)
...|.|+.++|++ .+|+++-.|.+|++|-+.+.+..-.+.+|.-+|.||..+||+ .+++|||.|.+|+||-+.-|.
T Consensus 508 ~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGD-- 583 (888)
T KOG0306|consen 508 EDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGD-- 583 (888)
T ss_pred cccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCc-CeEEeccCCCceEEeccccch--
Confidence 6889999999999 899999999999999999999888889999999999999987 799999999999999998875
Q ss_pred CCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380 404 KPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR 483 (536)
Q Consensus 404 ~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg 483 (536)
.-..+++|...|+++.|.|....+.+++.|+.|+-||-..++.+..+..+.. -+.+.+.+|+|.++++++.|.
T Consensus 584 --CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~-----ev~cLav~~~G~~vvs~shD~ 656 (888)
T KOG0306|consen 584 --CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS-----EVWCLAVSPNGSFVVSSSHDK 656 (888)
T ss_pred --hhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchh-----eeeeeEEcCCCCeEEeccCCc
Confidence 3345679999999999999999999999999999999999888888753322 233356789999999999999
Q ss_pred cEEEEcCCcc
Q 009380 484 TVEVISPAQR 493 (536)
Q Consensus 484 ~I~v~d~~~~ 493 (536)
+|++|.....
T Consensus 657 sIRlwE~tde 666 (888)
T KOG0306|consen 657 SIRLWERTDE 666 (888)
T ss_pred eeEeeeccCc
Confidence 9999987653
No 69
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=254.61 Aligned_cols=248 Identities=15% Similarity=0.264 Sum_probs=207.8
Q ss_pred Eec-cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC--------------------------------Ce-------
Q 009380 277 LFR-THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK--------------------------------EV------- 316 (536)
Q Consensus 277 ~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~--------------------------------~~------- 316 (536)
.+. .|.+.|+++.|++|| .|||+|+.|+.|+||.+.. ..
T Consensus 261 e~~~ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred ccccccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 344 899999999999999 9999999999999998754 00
Q ss_pred ----------------------EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEE
Q 009380 317 ----------------------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTID 374 (536)
Q Consensus 317 ----------------------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~ 374 (536)
+..+.+|.+.|.+|.|+.+ ++|++++.|.+|++|++....++..|. |.+.|+||+
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA 416 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence 0112368889999999987 499999999999999999999999997 999999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEec
Q 009380 375 FNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHH 454 (536)
Q Consensus 375 ~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~ 454 (536)
|+|-+.++|++|+.||.|+||++... .+........-|++++|.|+|++.++|+.+|.+++|+....+.......
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~-----~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDK-----KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcC-----eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 99988899999999999999999873 4555666779999999999999999999999999999987766554431
Q ss_pred c-----CCCCceeeeeEEEEcCC-CCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCC
Q 009380 455 N-----NQTGRWISSFRAIWGWD-DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG 528 (536)
Q Consensus 455 ~-----~~~~~~~~~~~~~~s~~-g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg 528 (536)
. +..+..|+.+. |.|. ...|++.+.|..|+|||.....++..|++.+...-....+|.. ||.+|+++++|.
T Consensus 492 ~~~~~Kk~~~~rITG~Q--~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs 568 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQ--FFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDS 568 (712)
T ss_pred eeccCccccCceeeeeE--ecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecCc
Confidence 1 22233566644 4443 2357888889999999999999999999887776667788888 889999999999
Q ss_pred eEEEEecC
Q 009380 529 QVYVWTSD 536 (536)
Q Consensus 529 ~v~iW~~d 536 (536)
.|+||+.+
T Consensus 569 ~VYiW~~~ 576 (712)
T KOG0283|consen 569 WVYIWKND 576 (712)
T ss_pred eEEEEeCC
Confidence 99999964
No 70
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.4e-28 Score=247.81 Aligned_cols=229 Identities=18% Similarity=0.221 Sum_probs=179.8
Q ss_pred EEeccCCCCEEEEEEec-CCCCEEEEEECCCeEEEEECCCCe--------EEEeecCCCceeEEEecCCCCCEEEEEECC
Q 009380 276 YLFRTHLGPISGIVTQQ-YCLSKIFTSCYDGLIRLMDAEKEV--------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ 346 (536)
Q Consensus 276 ~~~~~h~~~V~~l~~~~-~~~~~l~s~s~dg~I~vwd~~~~~--------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d 346 (536)
..+.+|.+.|.+++|+| ++ ++|++|+.|++|++||+.++. ...+.+|...|.+++|+|++.++|++|+.|
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D 147 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD 147 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCC-CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence 35789999999999999 55 899999999999999997642 334567899999999999876899999999
Q ss_pred CeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCc-eeEEEEccC
Q 009380 347 GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRA-VHSAYFSPS 425 (536)
Q Consensus 347 g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~-v~~l~~sp~ 425 (536)
+.|++||+++++.+..+..|...|.+++|+|++ .+|++++.|+.|+|||+++++ .......|... +..+.|.++
T Consensus 148 gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~----~v~tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 148 MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGT----IVSSVEAHASAKSQRCLWAKR 222 (493)
T ss_pred CEEEEEECCCCeEEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCc----EEEEEecCCCCcceEEEEcCC
Confidence 999999999999888999999999999999987 799999999999999999864 34455567654 457889998
Q ss_pred CCeEEEEe----CCCcEEEEeCCCCCcceEE-eccCCCCceeeeeEEEEcCCCCEEEEEc-CCCcEEEEcCCccccceec
Q 009380 426 GSSLATTS----FDDTIGIWSGVNFENTSMI-HHNNQTGRWISSFRAIWGWDDSCVFIGN-MTRTVEVISPAQRRSVATL 499 (536)
Q Consensus 426 g~~l~t~s----~dg~I~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~gs-~dg~I~v~d~~~~~~~~~l 499 (536)
+..|++++ .|+.|++||+++....... ...... ..+.+.|++++.+|++|+ .|+.|++||+.+++.+..+
T Consensus 223 ~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~----~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 223 KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS----ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred CCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC----ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 88787765 4789999999876543322 221111 122366899999998887 5999999999998876655
Q ss_pred cCCceeeeeeeEeecC
Q 009380 500 QSPYISAIPCRFHAHP 515 (536)
Q Consensus 500 ~~~~~~~~~~~~~~~p 515 (536)
...+.... ..+++.|
T Consensus 299 ~~~s~~~~-~g~~~~p 313 (493)
T PTZ00421 299 SYSSVEPH-KGLCMMP 313 (493)
T ss_pred eccCCCCC-cceEecc
Confidence 43322222 2455555
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.7e-29 Score=235.40 Aligned_cols=283 Identities=15% Similarity=0.204 Sum_probs=231.5
Q ss_pred cccceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCCccEEEEEeCCCcE
Q 009380 182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNI 260 (536)
Q Consensus 182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v 260 (536)
..+.|.++.|+|..-.-... +++ -.+.||+..... ...+.-+...|+++.|-. ||.+||+|+..|.|
T Consensus 25 e~~~vssl~fsp~~P~d~aV--------t~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~--DG~LlaaGD~sG~V 92 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAV--------TSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRS--DGRLLAAGDESGHV 92 (487)
T ss_pred ccCcceeEecCCCCCCceEE--------ecc--cEEEEEecchhhhhhhHHhhccceeEEEeec--CCeEEEccCCcCcE
Confidence 34788999999955433322 112 267888864332 222344688999999999 99999999999999
Q ss_pred EEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE-EeecCCCceeEEEecCCCCCE
Q 009380 261 TFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNT 339 (536)
Q Consensus 261 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~ 339 (536)
+|||..+ ...+..+.+|+.+|..+.|+|.+...|++|+.|+.+++||+.+.... .+.+|...|.|.+|+|..+++
T Consensus 93 ~vfD~k~----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hi 168 (487)
T KOG0310|consen 93 KVFDMKS----RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHI 168 (487)
T ss_pred EEecccc----HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeE
Confidence 9999665 56788899999999999999998788999999999999999988654 566899999999999998889
Q ss_pred EEEEECCCeEEEEECCCC-ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCcee
Q 009380 340 LYFGEGQGGLNIWDVRSR-KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVH 418 (536)
Q Consensus 340 l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~ 418 (536)
+++|+.||.|++||+++. ..+.++. |..+|..|.+.|.| .++++++. ..|+|||+-++. ..+.....|...|+
T Consensus 169 vvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~G~---qll~~~~~H~KtVT 242 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSG-SLIASAGG-NSVKVWDLTTGG---QLLTSMFNHNKTVT 242 (487)
T ss_pred EEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCC-CEEEEcCC-CeEEEEEecCCc---eehhhhhcccceEE
Confidence 999999999999999987 5566665 99999999999976 68888874 579999999764 23444445999999
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380 419 SAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 419 ~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~ 492 (536)
|+.+..++..|++++.|+.+++||+.+.+.+..+....+ ++.+..+|+++.+++|-.||.+.+-....
T Consensus 243 cL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~p------vLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 243 CLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGP------VLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred EEEeecCCceEeecccccceEEEEccceEEEEeeecccc------eeeEEecCCCceEEEecccceeeeehhhc
Confidence 999999999999999999999999988888777755442 34477899999999999999887775433
No 72
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=3.1e-29 Score=238.01 Aligned_cols=294 Identities=17% Similarity=0.195 Sum_probs=228.4
Q ss_pred cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc------ccccccCCceEEEEEEecCC
Q 009380 174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE------NIARIMPGRITQMKFLPCSD 247 (536)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~------~~~~~~~~~I~~v~~~p~~~ 247 (536)
+....+++|...|.++.+.|.|-.++ +++.|..|++||+..-.. .+.-.-...|.++.|++ .
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~----------sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~--T 225 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFV----------SGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV--T 225 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceee----------eccccceEEEEecccccccchhhhccCcccccccceeeecC--C
Confidence 34456788889999999999998888 568999999999742111 11122256899999999 7
Q ss_pred ccEEEEEeCCCcEEEEECCCCCC--------CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-E
Q 009380 248 VRMVVAGSKLGNITFWNLDSQQD--------EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-D 318 (536)
Q Consensus 248 ~~~l~tg~~dg~v~iwd~~~~~~--------~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-~ 318 (536)
|..|++.+..-+.+|+|-+.... --.-+...++|...++|.+|+|.....|+||++||++++||++..+. .
T Consensus 226 g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~ 305 (641)
T KOG0772|consen 226 GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL 305 (641)
T ss_pred CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence 88888888788999999774211 00122345789999999999999889999999999999999986432 2
Q ss_pred Eee------cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc--c-eeEeccCC--CeEEEEEecCCCCEEEEEe
Q 009380 319 LVY------SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS--A-TEWLLHEA--RINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 319 ~~~------~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~--~-~~~~~h~~--~i~~i~~~p~~~~~l~s~s 387 (536)
.++ +..-++++++|++++ .+|++|+.||.|.+|+.+.... . ..-..|.. .|+||.|+++| ++|++-+
T Consensus 306 qVik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg 383 (641)
T KOG0772|consen 306 QVIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-NYLLSRG 383 (641)
T ss_pred eEEeeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc-chhhhcc
Confidence 222 223578999999999 7899999999999999865432 2 22347877 89999999988 7999999
Q ss_pred CCCcEEEEeCCCCCCCCCCcceee---cccCceeEEEEccCCCeEEEEeC------CCcEEEEeCCCCCcceEEeccCCC
Q 009380 388 TDGTACIWDLRSMATDKPEPMKVL---SHKRAVHSAYFSPSGSSLATTSF------DDTIGIWSGVNFENTSMIHHNNQT 458 (536)
Q Consensus 388 ~dg~i~iwdl~~~~~~~~~~~~~~---~~~~~v~~l~~sp~g~~l~t~s~------dg~I~iwd~~~~~~~~~~~~~~~~ 458 (536)
.|+++++||++..+ .++... ....+-+.++|||+.++|+||+. .|++.+||..+...+..+...
T Consensus 384 ~D~tLKvWDLrq~k----kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--- 456 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFK----KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--- 456 (641)
T ss_pred CCCceeeeeccccc----cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC---
Confidence 99999999999865 232222 34556788999999999999863 567999999998888887554
Q ss_pred CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380 459 GRWISSFRAIWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 459 ~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
..++.++.|+|.-+.|++|+.||.++||--
T Consensus 457 --~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 457 --TASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred --CceEEEEeecchhhheeeecCCCceEEEEC
Confidence 235666899999889999999999998744
No 73
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=7.1e-28 Score=245.48 Aligned_cols=265 Identities=17% Similarity=0.154 Sum_probs=195.0
Q ss_pred cccceeeeecCCCCcccccccccccccccccccceEEecccccC----ccccccccCCceEEEEEEecCCccEEEEEeCC
Q 009380 182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK----PENIARIMPGRITQMKFLPCSDVRMVVAGSKL 257 (536)
Q Consensus 182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~----~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d 257 (536)
+...|.....++++..++......+.+.-...+|...++.-... ....+.+|.+.|++++|+|. ++.+|++|+.|
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~-d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF-DPQKLFTASED 97 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC-CCCEEEEEeCC
Confidence 34555566666675444433223322211112233334332111 11245789999999999995 56799999999
Q ss_pred CcEEEEECCCCCC---CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCceeEEEec
Q 009380 258 GNITFWNLDSQQD---EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQ 333 (536)
Q Consensus 258 g~v~iwd~~~~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~ 333 (536)
|+|+|||+..... ....+..+.+|...|.+++|+|++.++|++++.|++|++||++++.....+ .|...|.+++|+
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence 9999999976321 124567889999999999999986579999999999999999988765444 588899999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCccceeEeccCCC-eEEEEEecCCCCEEEEE---eCCCcEEEEeCCCCCCCCCCcce
Q 009380 334 PNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEAR-INTIDFNPRNPNIMATS---STDGTACIWDLRSMATDKPEPMK 409 (536)
Q Consensus 334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~-i~~i~~~p~~~~~l~s~---s~dg~i~iwdl~~~~~~~~~~~~ 409 (536)
|++ .+|++++.||.|++||+++++.+..+.+|.+. +..+.|.+++..++.+| +.|+.|++||+++.. .+..
T Consensus 178 pdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~----~p~~ 252 (493)
T PTZ00421 178 LDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA----SPYS 252 (493)
T ss_pred CCC-CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC----Ccee
Confidence 998 89999999999999999999998888888765 45678888774444443 247999999999754 2333
Q ss_pred ee--cccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEE
Q 009380 410 VL--SHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMI 452 (536)
Q Consensus 410 ~~--~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~ 452 (536)
.. .+...+....|++++++|++++ .|+.|++||+.+++.....
T Consensus 253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 253 TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 22 3345566778999999999888 5999999999988765554
No 74
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.8e-29 Score=230.75 Aligned_cols=290 Identities=13% Similarity=0.132 Sum_probs=231.2
Q ss_pred cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc----cccccccCCceEEEEEEecCCcc
Q 009380 174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP----ENIARIMPGRITQMKFLPCSDVR 249 (536)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~----~~~~~~~~~~I~~v~~~p~~~~~ 249 (536)
+...++..|.++|+.++||++|++||+. +.|.+.-+|.+..+. ...+.+|..+|.-+.|+| |.+
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsa----------SkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP--Ddr 282 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASA----------SKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP--DDR 282 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeec----------cCCceEEEEEEecCcceeeeeeeecccCceEEEEECC--CCC
Confidence 4456789999999999999999999954 566677778764332 344567899999999999 999
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC-CCce
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS-EYAV 327 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~-~~~i 327 (536)
+|++++.+..+.+||+.+ +...+.+. +|...+.+++|.||+ ..+++|+.|++|..||++........+. ...|
T Consensus 283 yLlaCg~~e~~~lwDv~t----gd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v 357 (519)
T KOG0293|consen 283 YLLACGFDEVLSLWDVDT----GDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKV 357 (519)
T ss_pred eEEecCchHheeeccCCc----chhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhhccccccccee
Confidence 999999999999999998 44444443 356889999999999 9999999999999999987654433332 3579
Q ss_pred eEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380 328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407 (536)
Q Consensus 328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~ 407 (536)
.+++..++| ..+++.+.|..|++|+..+......+. ...+|++++.+.++ +++++.-.+..|++||+... ..+
T Consensus 358 ~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~----~lv 430 (519)
T KOG0293|consen 358 HDLAITYDG-KYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDG-KLALVNLQDQEIHLWDLEEN----KLV 430 (519)
T ss_pred EEEEEcCCC-cEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCC-cEEEEEcccCeeEEeecchh----hHH
Confidence 999999999 788888899999999988765554443 56789999999987 68888888999999999963 356
Q ss_pred ceeecccCc--eeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCC-CEEEEEcCCC
Q 009380 408 MKVLSHKRA--VHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDD-SCVFIGNMTR 483 (536)
Q Consensus 408 ~~~~~~~~~--v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~gs~dg 483 (536)
....+|... +-.-+|-- +..++++|+.|+.|+||+..+++++..+..+. -++-+++|+|.. .++|+++.||
T Consensus 431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs-----~~vNcVswNP~~p~m~ASasDDg 505 (519)
T KOG0293|consen 431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS-----KTVNCVSWNPADPEMFASASDDG 505 (519)
T ss_pred HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc-----ceeeEEecCCCCHHHhhccCCCC
Confidence 666777654 33334543 55799999999999999999999998874322 233448899965 5699999999
Q ss_pred cEEEEcCCc
Q 009380 484 TVEVISPAQ 492 (536)
Q Consensus 484 ~I~v~d~~~ 492 (536)
+|+||-...
T Consensus 506 tIRIWg~~~ 514 (519)
T KOG0293|consen 506 TIRIWGPSD 514 (519)
T ss_pred eEEEecCCc
Confidence 999997654
No 75
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=2.3e-27 Score=242.71 Aligned_cols=249 Identities=13% Similarity=0.156 Sum_probs=190.8
Q ss_pred EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe---------EEEeecCC
Q 009380 254 GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV---------FDLVYSSE 324 (536)
Q Consensus 254 g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~---------~~~~~~~~ 324 (536)
|+.++.|++|+... ...+..+.+|.+.|.+++|+|+.+.+|++|+.||+|++||+.++. ...+.+|.
T Consensus 50 GG~~gvI~L~~~~r----~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 50 GGLIGAIRLENQMR----KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred CCceeEEEeeecCC----CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence 66788999999876 567888999999999999999844899999999999999997532 12345788
Q ss_pred CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 009380 325 YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK 404 (536)
Q Consensus 325 ~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~ 404 (536)
..|.+++|+|++..+|++++.|+.|++||+++++.+..+. |...|.+++|+|+| .+|++++.|+.|+|||++++.
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~--- 200 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQE--- 200 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCc---
Confidence 9999999999986667899999999999999998777775 66889999999988 689999999999999999864
Q ss_pred CCcceeecccCceeE-----EEEccCCCeEEEEeCCC----cEEEEeCCC-CCcceEEeccCCCCceeeeeEEEEc-CCC
Q 009380 405 PEPMKVLSHKRAVHS-----AYFSPSGSSLATTSFDD----TIGIWSGVN-FENTSMIHHNNQTGRWISSFRAIWG-WDD 473 (536)
Q Consensus 405 ~~~~~~~~~~~~v~~-----l~~sp~g~~l~t~s~dg----~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~s-~~g 473 (536)
.+..+.+|.+.+.+ ..|++++.+|++++.|+ +|+|||+++ .+++..+.+....+. +...|. ++|
T Consensus 201 -~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~----L~p~~D~~tg 275 (568)
T PTZ00420 201 -IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAP----LIPHYDESTG 275 (568)
T ss_pred -EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccc----eEEeeeCCCC
Confidence 44455678765433 34568889999988775 799999996 455555544433322 223344 458
Q ss_pred CEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCC
Q 009380 474 SCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQ 517 (536)
Q Consensus 474 ~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~ 517 (536)
.++++|+.|+.|++|++..+. +..+...........++|.|..
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 889999999999999998763 3444332222222356777743
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=3.9e-28 Score=247.63 Aligned_cols=273 Identities=17% Similarity=0.261 Sum_probs=231.2
Q ss_pred cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEE-eccCCCCEEEEEEecCCCCEEEEEECCCeEEEEE
Q 009380 233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYL-FRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD 311 (536)
Q Consensus 233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd 311 (536)
+...+.+..|+. .++++++.+++|.+|+..+ ...+.. +.+|.+.|+++++..-+ .+|++|+.|.++++||
T Consensus 207 ~~~~~~~~q~~~----~~~~~~s~~~tl~~~~~~~----~~~i~~~l~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 207 DDHVVLCLQLHD----GFFKSGSDDSTLHLWDLNN----GYLILTRLVGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWD 277 (537)
T ss_pred Ccchhhhheeec----CeEEecCCCceeEEeeccc----ceEEEeeccCCCCCceeEEEecCC-CEEEEEecCCcEEeEe
Confidence 567788888874 6899999999999999998 666666 99999999999998744 9999999999999999
Q ss_pred CCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380 312 AEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG 390 (536)
Q Consensus 312 ~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg 390 (536)
..++.+...+ +|...|.++...+ ..+++|+.|.+|++|++.++..+..+.+|..+|++|..+ + .++++|+.|+
T Consensus 278 ~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~ 351 (537)
T KOG0274|consen 278 CSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--E-PLLVSGSYDG 351 (537)
T ss_pred cCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--C-CEEEEEecCc
Confidence 9999887666 5889999998865 478889999999999999999999999999999999998 3 6999999999
Q ss_pred cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC-CcceEEeccCCCCceeeeeEEEE
Q 009380 391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF-ENTSMIHHNNQTGRWISSFRAIW 469 (536)
Q Consensus 391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 469 (536)
+|++||+.+++ .+..+.+|...|.++.+.+. .++++|+.|++|++||+.+. +++.++.+..... .. .
T Consensus 352 ~v~VW~~~~~~----cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v---~~----l 419 (537)
T KOG0274|consen 352 TVKVWDPRTGK----CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV---SS----L 419 (537)
T ss_pred eEEEEEhhhce----eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc---cc----c
Confidence 99999999864 55566689999999988765 88999999999999999999 8888776544322 11 2
Q ss_pred cCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 470 GWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 470 s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
...+++|++++.|+.|++||..+++++..+.+.+...+ ..+.+. ...+++++.||.+.+||+.
T Consensus 420 ~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v-~~l~~~---~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 420 LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGV-SALALG---KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred ccccceeEeccccccEEEeecccCceeeeeccCCcccE-EEeecC---cceEEEEecCCeeEEEecc
Confidence 33567999999999999999999999999998533333 233432 3789999999999999974
No 77
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.3e-29 Score=226.03 Aligned_cols=280 Identities=12% Similarity=0.175 Sum_probs=237.4
Q ss_pred ccccceeeeecCCCCcccccccccccccccccccceEEecccccCc---------cccccccCCceEEEEEEecCCccEE
Q 009380 181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP---------ENIARIMPGRITQMKFLPCSDVRMV 251 (536)
Q Consensus 181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~---------~~~~~~~~~~I~~v~~~p~~~~~~l 251 (536)
|...-++|..|+|||.+|+ +++.||.|.+|++.... ..-+-.+.+.|.|+.|+. |..+|
T Consensus 211 g~KSh~EcA~FSPDgqyLv----------sgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR--DsEMl 278 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLV----------SGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR--DSEML 278 (508)
T ss_pred ccccchhheeeCCCCceEe----------eccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc--cHHHh
Confidence 4456789999999999999 55899999999973321 222345689999999999 99999
Q ss_pred EEEeCCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE-EeecCCCceeE
Q 009380 252 VAGSKLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFS 329 (536)
Q Consensus 252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~ 329 (536)
|+|+.||.|++|.+.+ +.++..|. .|+..|+|+.|+.|+ ..+++++.|.++++.-+.+|++. .+.+|...|+.
T Consensus 279 AsGsqDGkIKvWri~t----G~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIET----GQCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred hccCcCCcEEEEEEec----chHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 9999999999999998 78888887 899999999999999 99999999999999999998765 45689999999
Q ss_pred EEecCCCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380 330 LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407 (536)
Q Consensus 330 l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~ 407 (536)
..|.++| +.+++++.||+|++|+..+.+++.+++ +..-+|+++...|.++..++.|....+|+|.++.. ++
T Consensus 354 a~ft~dG-~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------Qv 426 (508)
T KOG0275|consen 354 ATFTDDG-HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------QV 426 (508)
T ss_pred eEEcCCC-CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------eE
Confidence 9999999 899999999999999999999999987 45568999999999999999999999999999875 33
Q ss_pred ceee----cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380 408 MKVL----SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR 483 (536)
Q Consensus 408 ~~~~----~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg 483 (536)
...+ ...+...++..+|.|.++++.+.|+.++.|.+.+++...++...... .+.+.-+|..+.|++-+.||
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd-----vIGl~HHPHqNllAsYsEDg 501 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD-----VIGLTHHPHQNLLASYSEDG 501 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc-----ccccccCcccchhhhhcccc
Confidence 3333 23456778889999999999999999999999999887777532221 11244578888999999999
Q ss_pred cEEEEc
Q 009380 484 TVEVIS 489 (536)
Q Consensus 484 ~I~v~d 489 (536)
.+++|.
T Consensus 502 llKLWk 507 (508)
T KOG0275|consen 502 LLKLWK 507 (508)
T ss_pred hhhhcC
Confidence 999995
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.8e-28 Score=230.75 Aligned_cols=279 Identities=18% Similarity=0.267 Sum_probs=227.4
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
.+.|++++|+|..--++.+|++ -.|.||+..+ .....++......|.+++|..|| .+|++|...|.|+|||+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~----~~~~k~~srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVT----RSVRKTFSRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMK 98 (487)
T ss_pred cCcceeEecCCCCCCceEEecc--cEEEEEecch----hhhhhhHHhhccceeEEEeecCC-eEEEccCCcCcEEEeccc
Confidence 5789999999953334555555 4799999987 56667777788899999999999 999999999999999965
Q ss_pred CC-eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380 314 KE-VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTA 392 (536)
Q Consensus 314 ~~-~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i 392 (536)
+. .+..+..|..++..+.|+|.+..++++|+.|+.+++||+.+......+.+|++.|.|.+|+|.++++++|||.||.|
T Consensus 99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 99 SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV 178 (487)
T ss_pred cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence 53 33456689999999999999988999999999999999999887668889999999999999988999999999999
Q ss_pred EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCC
Q 009380 393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD 472 (536)
Q Consensus 393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 472 (536)
++||+|... .......|..+|.++.+-|.|..|++++. +.|+|||+.++........ .+...+++ +.+..+
T Consensus 179 rl~DtR~~~----~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~--~H~KtVTc--L~l~s~ 249 (487)
T KOG0310|consen 179 RLWDTRSLT----SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF--NHNKTVTC--LRLASD 249 (487)
T ss_pred EEEEeccCC----ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhh--cccceEEE--EEeecC
Confidence 999999853 45566789999999999999999998874 5699999986544333221 12223555 456778
Q ss_pred CCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEE
Q 009380 473 DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 532 (536)
Q Consensus 473 g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~i 532 (536)
+..|++|+-|+.|++||+.+.+.+..+.-. . .+ .+++.+| +++.++.|-.||.+.+
T Consensus 250 ~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~-~-pv-Lsiavs~-dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 250 STRLLSGSLDRHVKVFDTTNYKVVHSWKYP-G-PV-LSIAVSP-DDQTVVIGMSNGLVSI 305 (487)
T ss_pred CceEeecccccceEEEEccceEEEEeeecc-c-ce-eeEEecC-CCceEEEecccceeee
Confidence 899999999999999999888888777532 2 22 4677778 4589999999998765
No 79
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=5.5e-28 Score=214.76 Aligned_cols=300 Identities=18% Similarity=0.266 Sum_probs=235.8
Q ss_pred cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC---C-----Cce---EEeccCCCCEEEEEEecCCC
Q 009380 227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE---D-----NGI---YLFRTHLGPISGIVTQQYCL 295 (536)
Q Consensus 227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~---~-----~~~---~~~~~h~~~V~~l~~~~~~~ 295 (536)
..+.+.|.+.|+++...+. .|+++++|+.||.|.+||++..... + .++ ..-.+|.-.|..+.|.|-..
T Consensus 36 ~d~~r~HgGsvNsL~id~t-egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 36 KDFVRPHGGSVNSLQIDLT-EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred cceeccCCCccceeeeccc-cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence 4556889999999999997 7899999999999999999864310 1 111 12236778899999999876
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCC--CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEE
Q 009380 296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNN--VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTI 373 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~--~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i 373 (536)
.++.+++.|.+++|||.++.+....+..++.|.+-+++|-. ..++++|..+-.|++.|+.+|...+++.+|.+.|.+|
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV 194 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAV 194 (397)
T ss_pred ceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEE
Confidence 89999999999999999999998899999999999998854 2577888899999999999999999999999999999
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCCC----------CCCCcce-eecccCceeEEEEccCCCeEEEEeCCCcEEEEe
Q 009380 374 DFNPRNPNIMATSSTDGTACIWDLRSMAT----------DKPEPMK-VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 442 (536)
Q Consensus 374 ~~~p~~~~~l~s~s~dg~i~iwdl~~~~~----------~~~~~~~-~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd 442 (536)
.|+|....+|++|+.||.|++||+|.... +.+..+. ...|.+.|+.++|..+|.++++++.|..+++|+
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 99999989999999999999999997521 2223333 346899999999999999999999999999999
Q ss_pred CCCCCcceEE----eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCC
Q 009380 443 GVNFENTSMI----HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQV 518 (536)
Q Consensus 443 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~ 518 (536)
..+++....- .++...+..+. +. +.+...++---.++.+.++++-++..+..+..|..... | ..+.| +-
T Consensus 275 ~~~G~ntl~~~g~~~~n~~~~~~~~---~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~-c-~~~~~-~f 347 (397)
T KOG4283|consen 275 MESGRNTLREFGPIIHNQTTSFAVH---IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRIN-C-AAYRP-DF 347 (397)
T ss_pred cccCcccccccccccccccccceEE---Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceee-E-EeecC-ch
Confidence 9877644322 22222222222 11 22333344334458899999999999999988744333 3 34555 44
Q ss_pred CEEEEEccCCeEEEEe
Q 009380 519 GTLAGATGGGQVYVWT 534 (536)
Q Consensus 519 ~~lasgs~Dg~v~iW~ 534 (536)
+...+|..|+.|..|-
T Consensus 348 q~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 348 EQCFTGDMNGNIYMWS 363 (397)
T ss_pred hhhhccccCCcccccc
Confidence 7899999999999985
No 80
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=2.5e-28 Score=229.49 Aligned_cols=255 Identities=20% Similarity=0.305 Sum_probs=210.3
Q ss_pred cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC------CCceEEeccCCCCEEEEEEecCCCCEEEEEECC
Q 009380 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE------DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD 304 (536)
Q Consensus 231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~------~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d 304 (536)
-.|.+.|+.+.+.|. +..+||+++..+.|.|||....... ..+-..+.+|...-.+++|++.....|++++.|
T Consensus 121 i~h~gEVnRaRymPQ-np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQ-NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCC-CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 458999999999996 6678888999999999999764321 233347889998888999999887899999999
Q ss_pred CeEEEEECCCCe--------EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC--CCccceeEeccCCCeEEEE
Q 009380 305 GLIRLMDAEKEV--------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR--SRKSATEWLLHEARINTID 374 (536)
Q Consensus 305 g~I~vwd~~~~~--------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~--~~~~~~~~~~h~~~i~~i~ 374 (536)
++|++||+.... ...+.+|...|..++|++....+|++++.|+.+.|||+| +.++.....+|...|+|++
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence 999999997532 234457899999999999988999999999999999999 5566777789999999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcc----
Q 009380 375 FNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENT---- 449 (536)
Q Consensus 375 ~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~---- 449 (536)
|+|.+..+|||||.|++|++||+|+.+ ..+..+.+|...|.+|.|+| ....|++++.|+.+.|||+......
T Consensus 280 fnp~~~~ilAT~S~D~tV~LwDlRnL~---~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 280 FNPFNEFILATGSADKTVALWDLRNLN---KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred eCCCCCceEEeccCCCcEEEeechhcc---cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 999999999999999999999999975 36667779999999999999 5578899999999999998643222
Q ss_pred --------eEEeccCCCCceeeeeEEEEcCCCCE-EEEEcCCCcEEEEcCCc
Q 009380 450 --------SMIHHNNQTGRWISSFRAIWGWDDSC-VFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 450 --------~~~~~~~~~~~~~~~~~~~~s~~g~~-l~~gs~dg~I~v~d~~~ 492 (536)
..|.|...+. .+..+.|+|+... |++.+.|+.+.||....
T Consensus 357 da~dgppEllF~HgGH~~---kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTA---KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhccCCcceeEEecCccc---ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 2244443332 3344779998776 77888999999998764
No 81
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=8.9e-28 Score=225.68 Aligned_cols=290 Identities=16% Similarity=0.194 Sum_probs=229.8
Q ss_pred cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC-------------CCceEEe-ccCCCCEEEEEEec
Q 009380 227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE-------------DNGIYLF-RTHLGPISGIVTQQ 292 (536)
Q Consensus 227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~-------------~~~~~~~-~~h~~~V~~l~~~~ 292 (536)
..+...|.-+|++|+++| +..++++++++|+|.-|++.++... +.....- ..|...|.+++.++
T Consensus 135 ~~~~~~H~~s~~~vals~--d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~ 212 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSP--DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS 212 (479)
T ss_pred ceeeccccCcceEEEeec--cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence 355678999999999999 9999999999999999999875321 0011111 37889999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeE
Q 009380 293 YCLSKIFTSCYDGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARIN 371 (536)
Q Consensus 293 ~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~ 371 (536)
|+ .+|++|+.|..|.||+.++...... .+|.+.|.+++|.... +.+++++.|+.|++|++.....+.++.+|.+.|.
T Consensus 213 Dg-kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 213 DG-KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYGHQDGVL 290 (479)
T ss_pred CC-cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhCCcccee
Confidence 99 9999999999999999999877665 5788999999998765 7899999999999999999999999999999999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceE
Q 009380 372 TIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSM 451 (536)
Q Consensus 372 ~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~ 451 (536)
+|....-+ ..+.+|+.|+++++|++.. ...+.+.+|.+.+.|++|-.+ ..|++|+.+|.|.+|++...+++.+
T Consensus 291 ~IdaL~re-R~vtVGgrDrT~rlwKi~e-----esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 291 GIDALSRE-RCVTVGGRDRTVRLWKIPE-----ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFT 363 (479)
T ss_pred eechhccc-ceEEeccccceeEEEeccc-----cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeE
Confidence 99888654 5777777999999999955 244556689999999999854 5699999999999999999888887
Q ss_pred Ee--ccCCCC-------ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc----ccceeccCCceeeeeeeEeecCCCC
Q 009380 452 IH--HNNQTG-------RWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR----RSVATLQSPYISAIPCRFHAHPHQV 518 (536)
Q Consensus 452 ~~--~~~~~~-------~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~----~~~~~l~~~~~~~~~~~~~~~p~~~ 518 (536)
.. |..... .|++. ++-.|...++++|+.+|.|++|-+..+ +++..+. .....+.++|.++ +
T Consensus 364 ~~~AHgv~~~~~~~~~~~Wits--la~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~s-g 437 (479)
T KOG0299|consen 364 SRLAHGVIPELDPVNGNFWITS--LAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLAFSNS-G 437 (479)
T ss_pred eeccccccCCccccccccceee--eEecccCceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEEEccC-C
Confidence 74 322222 26666 445688889999999999999999887 2333333 2233467788774 4
Q ss_pred C-EEEEEccCCeEEEE
Q 009380 519 G-TLAGATGGGQVYVW 533 (536)
Q Consensus 519 ~-~lasgs~Dg~v~iW 533 (536)
. +++..+....+-=|
T Consensus 438 k~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 438 KRIVAGIGKEHRLGRW 453 (479)
T ss_pred CEEEEeccccccccee
Confidence 5 55555555444444
No 82
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1e-27 Score=223.46 Aligned_cols=282 Identities=18% Similarity=0.249 Sum_probs=233.3
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
...|+++...| ....+++|+.|.++.++|... ...+..+.||...|+.+.|+|+. ..+++++.|..|+||...
T Consensus 219 ~pgi~ald~~~--s~~~ilTGG~d~~av~~d~~s----~q~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~ 291 (506)
T KOG0289|consen 219 TPGITALDIIP--SSSKILTGGEDKTAVLFDKPS----NQILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVP 291 (506)
T ss_pred CCCeeEEeecC--CCCcceecCCCCceEEEecch----hhhhhhccCcceEEEEEEeccch-hheeecCCcceEEeeccc
Confidence 35688888888 678999999999999999998 78899999999999999999998 999999999999999987
Q ss_pred CC-eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec--cCCCeEEEEEecCCCCEEEEEeCCC
Q 009380 314 KE-VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL--HEARINTIDFNPRNPNIMATSSTDG 390 (536)
Q Consensus 314 ~~-~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h~~~i~~i~~~p~~~~~l~s~s~dg 390 (536)
.. .......|+.+|+.+..+|.+ .+|++++.||+..+.|++++..+..... ..-.+++..||||| .+|.+|..||
T Consensus 292 ~~s~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~ 369 (506)
T KOG0289|consen 292 LSSEPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDG 369 (506)
T ss_pred cccCccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCc
Confidence 65 444566799999999999999 8999999999999999999988766552 23458999999998 8999999999
Q ss_pred cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEc
Q 009380 391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG 470 (536)
Q Consensus 391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s 470 (536)
.|+|||+.... ....+.+|.++|..++|+.+|-+|++++.|+.|++||++..+...++...... .+.. +.|.
T Consensus 370 ~vkiwdlks~~----~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~--~v~s--~~fD 441 (506)
T KOG0289|consen 370 VVKIWDLKSQT----NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK--EVNS--LSFD 441 (506)
T ss_pred eEEEEEcCCcc----ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc--ccee--EEEc
Confidence 99999999853 56677789999999999999999999999999999999998888777543322 2333 6789
Q ss_pred CCCCEEEEEcCCCcEEEEcCC--ccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 471 WDDSCVFIGNMTRTVEVISPA--QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 471 ~~g~~l~~gs~dg~I~v~d~~--~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
+.|.+|++++.+=.|++++-. +...+..+..|. .....+.|... ..++++++.|..++|+.+
T Consensus 442 ~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg~~-aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 442 QSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS--GLSTGVRFGEH-AQYLASTSMDAILRLYAL 505 (506)
T ss_pred CCCCeEEeecceeEEEEEecccccceeeehhhhcc--cccceeeeccc-ceEEeeccchhheEEeec
Confidence 999999999877666666633 344555554433 22234556543 489999999999999865
No 83
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.4e-28 Score=218.98 Aligned_cols=301 Identities=14% Similarity=0.172 Sum_probs=244.6
Q ss_pred cccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc-ccccccCCceEEEEEEecCCccE
Q 009380 172 DENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRM 250 (536)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~ 250 (536)
.+.+..-+.||.|+|+.+.......++. +.+.|.+..||.+..... ....+|.+.|++++|++ .+.+
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~g----------tASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~--s~~L 204 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICG----------TASADHTARIWSLESGACLATYTGHTGSVNSIKFHN--SGLL 204 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCccee----------ecccccceeEEeeccccceeeecccccceeeEEecc--ccce
Confidence 4677888999999999998877776555 457888999999866544 34688999999999999 9999
Q ss_pred EEEEeCCCcEEEEECC------CC--------CC----------------------CCCceEEeccCCCCEEEEEEecCC
Q 009380 251 VVAGSKLGNITFWNLD------SQ--------QD----------------------EDNGIYLFRTHLGPISGIVTQQYC 294 (536)
Q Consensus 251 l~tg~~dg~v~iwd~~------~~--------~~----------------------~~~~~~~~~~h~~~V~~l~~~~~~ 294 (536)
+++++.|++..||... .. ++ ...++..+.+|.+.|.+..|...+
T Consensus 205 ~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg 284 (481)
T KOG0300|consen 205 LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG 284 (481)
T ss_pred EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc
Confidence 9999999999999721 10 00 012456788999999999999888
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC-ccceeEeccCCCeEE
Q 009380 295 LSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR-KSATEWLLHEARINT 372 (536)
Q Consensus 295 ~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~ 372 (536)
+.+++++.|.+-.+||++++.... +.+|+...+.++-+|.. .++++.+.|.+.++||++.. ..+..|++|.+.|++
T Consensus 285 -~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 285 -QQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS 362 (481)
T ss_pred -ceeeeeeccccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence 999999999999999999997765 45799999999999997 89999999999999999953 337789999999999
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE
Q 009380 373 IDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI 452 (536)
Q Consensus 373 i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~ 452 (536)
+.|.-+. .+++|+.|.+|+|||++++. .++.......+++.++.+..+..|+.-..+..|++||+.... +..+
T Consensus 363 ~vF~~dd--~vVSgSDDrTvKvWdLrNMR----splATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRl 435 (481)
T KOG0300|consen 363 VVFNTDD--RVVSGSDDRTVKVWDLRNMR----SPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARL 435 (481)
T ss_pred EEEecCC--ceeecCCCceEEEeeecccc----CcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCc-cccC
Confidence 9999854 69999999999999999975 566677788899999999888888888888899999996543 4444
Q ss_pred eccCCCCceeeeeEEEEcCCCC--EEEEEcCCCcEEEEcCCcc
Q 009380 453 HHNNQTGRWISSFRAIWGWDDS--CVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 453 ~~~~~~~~~~~~~~~~~s~~g~--~l~~gs~dg~I~v~d~~~~ 493 (536)
+.....++.-...+++|..+.. -|++++.|+.+.-|.+...
T Consensus 436 PrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 436 PRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 4333444444455578876543 4888999999999988654
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.9e-27 Score=208.17 Aligned_cols=275 Identities=19% Similarity=0.183 Sum_probs=238.2
Q ss_pred ecccccceeeeecCCCCcccccccccccccccccccceEEecccccC---ccccccccCCceEEEEEEecCCccEEEEEe
Q 009380 179 IKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK---PENIARIMPGRITQMKFLPCSDVRMVVAGS 255 (536)
Q Consensus 179 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~---~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~ 255 (536)
+.+|...|..+.+.-+|..++ ++..|+.+.+|++... .....++|.+.|-.++|+|. ..+++++++
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~la----------sgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~-~~d~~atas 84 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLA----------SGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK-HPDLFATAS 84 (313)
T ss_pred hhhhhhcceEEEEcccCceee----------ecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC-CCcceEEec
Confidence 578889999999999999999 4588899999997543 23456789999999999986 567999999
Q ss_pred CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCC
Q 009380 256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPN 335 (536)
Q Consensus 256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~ 335 (536)
.|.+|++||... .++........+.| -+.|+|+| .+++.++.|..|...|.++.+....+.....+..++|+.+
T Consensus 85 ~dk~ir~wd~r~----~k~~~~i~~~~eni-~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~ 158 (313)
T KOG1407|consen 85 GDKTIRIWDIRS----GKCTARIETKGENI-NITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNS 158 (313)
T ss_pred CCceEEEEEecc----CcEEEEeeccCcce-EEEEcCCC-CEEEEecCcccEEEEEecccceeehhcccceeeeeeecCC
Confidence 999999999998 77887777666666 47899999 9999999999999999999888888888888999999965
Q ss_pred CCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC
Q 009380 336 NVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR 415 (536)
Q Consensus 336 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~ 415 (536)
+ ++++.....|+|.|.....-+++..++.|.....||.|.|+| .+||+|+.|-.+.+||+...- ....+..+.-
T Consensus 159 n-d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELi----C~R~isRldw 232 (313)
T KOG1407|consen 159 N-DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELI----CERCISRLDW 232 (313)
T ss_pred C-CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhh----hheeeccccC
Confidence 5 777777788999999999999999999999999999999988 799999999999999998752 2233447889
Q ss_pred ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC
Q 009380 416 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT 482 (536)
Q Consensus 416 ~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d 482 (536)
+|..++|+.+|++||+++.|..|-|=++.++..+..+++..++ +.++|+|...+|+-+..|
T Consensus 233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t------~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPT------FTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCc------eeEEecCCCceeeEEecC
Confidence 9999999999999999999999999999999999999776643 448999999888877655
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-27 Score=234.51 Aligned_cols=271 Identities=17% Similarity=0.236 Sum_probs=224.7
Q ss_pred EEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE
Q 009380 239 QMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD 318 (536)
Q Consensus 239 ~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~ 318 (536)
-+.|+. .+.|++|.. ..|++|+..+ +........+...|+++.|+++| .+|++|..+|.|.|||..+.+..
T Consensus 182 lldWss---~n~laValg-~~vylW~~~s----~~v~~l~~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~ 252 (484)
T KOG0305|consen 182 LLDWSS---ANVLAVALG-QSVYLWSASS----GSVTELCSFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKT 252 (484)
T ss_pred Hhhccc---CCeEEEEec-ceEEEEecCC----CceEEeEecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhcccc
Confidence 466774 356777653 5899999987 44444444458899999999999 99999999999999999876443
Q ss_pred -Eeec-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee-EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380 319 -LVYS-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE-WLLHEARINTIDFNPRNPNIMATSSTDGTACIW 395 (536)
Q Consensus 319 -~~~~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw 395 (536)
.+.. |...|.+++|.. ..+.+|+.+|.|..+|++..+.... +.+|...|..+.|++++ +++|+|+.|+.+.||
T Consensus 253 ~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iw 328 (484)
T KOG0305|consen 253 RTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIW 328 (484)
T ss_pred ccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC-CeeccCCCccceEec
Confidence 3334 789999999983 6899999999999999998877544 88999999999999988 799999999999999
Q ss_pred eCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEe--CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCC
Q 009380 396 DLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTS--FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD 472 (536)
Q Consensus 396 dl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 472 (536)
|.... ...+.+..|...|..++|+| ...+||+|+ .|++|++||..++..+..+ .++..+.. +.|++.
T Consensus 329 d~~~~----~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v----dtgsQVcs--L~Wsk~ 398 (484)
T KOG0305|consen 329 DGLSP----EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV----DTGSQVCS--LIWSKK 398 (484)
T ss_pred cCCCc----cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc----ccCCceee--EEEcCC
Confidence 99653 46777889999999999999 667888875 6999999999988888777 34444555 779998
Q ss_pred CCEEEE--EcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 473 DSCVFI--GNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 473 g~~l~~--gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
.+-|++ |..++.|.||+..+.+.+..+.+|...+ ..++++| ++..+++|+.|.+|++|++
T Consensus 399 ~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RV--l~la~SP-dg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 399 YKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRV--LYLALSP-DGETIVTGAADETLRFWNL 460 (484)
T ss_pred CCEEEEecCCCCCcEEEEeccccceeeeecCCccee--EEEEECC-CCCEEEEecccCcEEeccc
Confidence 766555 4556789999999999999998877664 4788999 6899999999999999986
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.1e-27 Score=221.35 Aligned_cols=268 Identities=19% Similarity=0.265 Sum_probs=220.2
Q ss_pred cccccccccceEEecccccCc-cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCC
Q 009380 206 VKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGP 284 (536)
Q Consensus 206 ~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~ 284 (536)
.++++++.|..+.++|...+. ..++++|...|+.+.|+| +...+++++.|-.|+||.... .........|..+
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~--~~~~v~~aSad~~i~vws~~~----~s~~~~~~~h~~~ 305 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHK--DLDTVITASADEIIRVWSVPL----SSEPTSSRPHEEP 305 (506)
T ss_pred CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEecc--chhheeecCCcceEEeecccc----ccCcccccccccc
Confidence 445678888889999975443 356789999999999999 889999999999999999987 5677788899999
Q ss_pred EEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC---CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccce
Q 009380 285 ISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE---YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSAT 361 (536)
Q Consensus 285 V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~---~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~ 361 (536)
|+.+..+|.| .||++++.||+..+.|++++.......++ -.+++.+|+||| .+|.+|+.||.|+|||+.++..+.
T Consensus 306 V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a 383 (506)
T KOG0289|consen 306 VTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVA 383 (506)
T ss_pred ceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccc
Confidence 9999999999 99999999999999999999877666553 458999999999 899999999999999999999999
Q ss_pred eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEE
Q 009380 362 EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441 (536)
Q Consensus 362 ~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iw 441 (536)
.|.+|.++|..|+|+.+| ++|++++.|+.|++||+|+.+.. ..+ .......+.++.|++.|.+|+.++.|=+|+++
T Consensus 384 ~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~--kt~-~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 384 KFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNF--KTI-QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred cCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhccc--cee-eccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 999999999999999866 99999999999999999996521 111 11334479999999999999999887777777
Q ss_pred eCC--CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380 442 SGV--NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 442 d~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
+-. ++..+..+... .+ ..+ .+.|....++++++++|..++++.+
T Consensus 460 ~k~~k~W~~~~~~~~~--sg-~st--~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 460 KKKTKSWTEIKELADH--SG-LST--GVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecccccceeeehhhhc--cc-ccc--eeeecccceEEeeccchhheEEeec
Confidence 633 33333333211 11 112 2668888899999999999988864
No 87
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.5e-27 Score=241.76 Aligned_cols=266 Identities=17% Similarity=0.185 Sum_probs=224.9
Q ss_pred cccccceEEecccccCc-ccc-ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380 210 KIEVGSCVDIGSLTLKP-ENI-ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISG 287 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~~~-~~~-~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~ 287 (536)
.+..++.|++|+..... ... +.+|.+.|.++++.. .+.+|++|+.|.++++||..+ +.+...+.+|...|.+
T Consensus 223 ~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~--~~~~lvsgS~D~t~rvWd~~s----g~C~~~l~gh~stv~~ 296 (537)
T KOG0274|consen 223 SGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS--GGDKLVSGSTDKTERVWDCST----GECTHSLQGHTSSVRC 296 (537)
T ss_pred ecCCCceeEEeecccceEEEeeccCCCCCceeEEEec--CCCEEEEEecCCcEEeEecCC----CcEEEEecCCCceEEE
Confidence 45677899999974332 233 578999999999986 688999999999999999888 8999999999999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc
Q 009380 288 IVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH 366 (536)
Q Consensus 288 l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h 366 (536)
+...+ .++++|+.|.+|++|+++++.+..+.. |..+|.++..+ + .++++|+.||+|.+||+.+++++..+.+|
T Consensus 297 ~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~sl~gH 370 (537)
T KOG0274|consen 297 LTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLKSLSGH 370 (537)
T ss_pred EEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceeeeeecCC
Confidence 98876 678999999999999999998888877 99999999998 3 69999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 009380 367 EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF 446 (536)
Q Consensus 367 ~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~ 446 (536)
...|.++.+.+. ..+++|+.|++|++||+++.. .....+.+|..-+..+.+ .+++|++++.|++|++||..++
T Consensus 371 ~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 371 TGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred cceEEEEEecCc--ceEEeeeeccceEeecCCchh---hhhhhhcCCccccccccc--ccceeEeccccccEEEeecccC
Confidence 999999988753 689999999999999999852 245555678888876666 5788999999999999999999
Q ss_pred CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380 447 ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~ 500 (536)
++..++.... ...+.. +++. ...+++++.++.+.+||+.++.....+-
T Consensus 444 ~~~~~~~~~~--~~~v~~--l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 444 ECLRTLEGRH--VGGVSA--LALG--KEEILCSSDDGSVKLWDLRSGTLIRTLL 491 (537)
T ss_pred ceeeeeccCC--cccEEE--eecC--cceEEEEecCCeeEEEecccCchhhhhh
Confidence 9999886541 112232 2222 4678999999999999999998887763
No 88
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.6e-27 Score=210.98 Aligned_cols=269 Identities=18% Similarity=0.270 Sum_probs=211.0
Q ss_pred EEEEEeCCCcEEEEECCCCC----C----CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe-EEEe
Q 009380 250 MVVAGSKLGNITFWNLDSQQ----D----EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV-FDLV 320 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~----~----~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~-~~~~ 320 (536)
.|++|++...|.=+++.... . ...+++.+..|.++|++++.+. .++++||.|-+|+|||+.+.. ...+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSG---PYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecc---eeEeccCCCCcEEEEeccchhhhcce
Confidence 36778888777777765432 0 1234678889999999999974 899999999999999998764 4566
Q ss_pred ecCCCceeEEEecCCC-CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380 321 YSSEYAVFSLSQQPNN-VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS 399 (536)
Q Consensus 321 ~~~~~~i~~l~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~ 399 (536)
..|.+.|+++.|.+.- .+.|++|+.||.|.+|+.....++..+++|.+.|+.++.||.+ .+.++.+.|+.++.|++-.
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhc
Confidence 7889999999998764 2379999999999999999999999999999999999999987 7888999999999999998
Q ss_pred CCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE
Q 009380 400 MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG 479 (536)
Q Consensus 400 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g 479 (536)
++... ........+.+.|+|.|.+++.++.++ |-||.+.+-.....+... ...+++.|- ++.+|++|
T Consensus 159 Gr~a~-----v~~L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~~------~r~l~~~~l-~~~~L~vG 225 (362)
T KOG0294|consen 159 GRVAF-----VLNLKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIENP------KRILCATFL-DGSELLVG 225 (362)
T ss_pred Cccce-----eeccCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhcc------ccceeeeec-CCceEEEe
Confidence 75221 122223334499999999999988765 999988766555444322 122224343 56789999
Q ss_pred cCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 480 NMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 480 s~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
..|+.|.+||..+..++..+.+|...+....+.-.| ++.+|+++++||.|+|||++
T Consensus 226 ~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~-~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 226 GDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNP-EHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred cCCceEEEeccCCCccceeeecchhheeeeEEEecC-CceEEEEeccCceEEEEEcc
Confidence 999999999999988888888877666543333344 56899999999999999985
No 89
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=214.37 Aligned_cols=285 Identities=17% Similarity=0.194 Sum_probs=232.6
Q ss_pred ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380 228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLI 307 (536)
Q Consensus 228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I 307 (536)
..+.+|.+.|+.++... ..+++.+++.|.+.+||.+++ +.++..+.+|.+.|++|.|++.+ .++++++.|++-
T Consensus 142 re~~GHkDGiW~Vaa~~--tqpi~gtASADhTA~iWs~Es----g~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~ta 214 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADS--TQPICGTASADHTARIWSLES----GACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETA 214 (481)
T ss_pred hhhcccccceeeehhhc--CCcceeecccccceeEEeecc----ccceeeecccccceeeEEecccc-ceEEEccCCcch
Confidence 34578999999999987 778999999999999999998 89999999999999999999998 999999999999
Q ss_pred EEEEC------CCC-----------------------------------eEEEeecCCCceeEEEecCCCCCEEEEEECC
Q 009380 308 RLMDA------EKE-----------------------------------VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ 346 (536)
Q Consensus 308 ~vwd~------~~~-----------------------------------~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d 346 (536)
.||.. ... .+..+.+|...|.+..|...+ ..++++++|
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSWD 293 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVTASWD 293 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeeeeecc
Confidence 99972 110 012344678889999999877 899999999
Q ss_pred CeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCC
Q 009380 347 GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSG 426 (536)
Q Consensus 347 g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g 426 (536)
.+-.+||++++..+..+.+|....+.++-+|.. .++++++.|-+.++||++.. -..+..+.+|...|+++.|.-+.
T Consensus 294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFRea---I~sV~VFQGHtdtVTS~vF~~dd 369 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREA---IQSVAVFQGHTDTVTSVVFNTDD 369 (481)
T ss_pred ccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhh---cceeeeecccccceeEEEEecCC
Confidence 999999999999999999999999999999966 79999999999999999953 23445566999999999999765
Q ss_pred CeEEEEeCCCcEEEEeCCCCC-cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc-----
Q 009380 427 SSLATTSFDDTIGIWSGVNFE-NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ----- 500 (536)
Q Consensus 427 ~~l~t~s~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~----- 500 (536)
+ +++|+.|.+|+|||++++. ++.++.......+ ++.+..+..|+.--.++.|++||+++.+ +..++
T Consensus 370 ~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NR------vavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRq 441 (481)
T KOG0300|consen 370 R-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANR------VAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQ 441 (481)
T ss_pred c-eeecCCCceEEEeeeccccCcceeeecCCccce------eEeecCCceEEeccCCceEEEEecCCCc-cccCCccccc
Confidence 4 9999999999999999874 5666655443322 4446667788888888999999998764 44443
Q ss_pred CCceeeeeeeEee---cCCCCCEEEEEccCCeEEEEecC
Q 009380 501 SPYISAIPCRFHA---HPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 501 ~~~~~~~~~~~~~---~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
+|...+. +.+| ||- .-|.+++.|..+.=|+++
T Consensus 442 gHrRMV~--c~AW~eehp~--cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 442 GHRRMVT--CCAWLEEHPA--CNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred ccceeee--eeeccccCcc--cccccccccceeeeeEec
Confidence 3433333 3444 342 468899999999999874
No 90
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.6e-27 Score=244.29 Aligned_cols=290 Identities=17% Similarity=0.256 Sum_probs=230.0
Q ss_pred CCceEEEEEEecCCccEEEEEe--CCCcEEEEECCCCCC--------CCCceEEeccCCCCEEEEEEecCCCCEEEEEEC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGS--KLGNITFWNLDSQQD--------EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY 303 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~--~dg~v~iwd~~~~~~--------~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~ 303 (536)
...|+++..+| ++..++||+ .||.++||+.+.-.. ....+.....|.+.|+|+.|+||| .+||+||.
T Consensus 13 ~~~IfSIdv~p--dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSD 89 (942)
T KOG0973|consen 13 EKSIFSIDVHP--DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSD 89 (942)
T ss_pred CeeEEEEEecC--CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-CeEeeccC
Confidence 56699999999 999999999 999999999864210 134566778899999999999999 99999999
Q ss_pred CCeEEEEECCC----C---------------eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe
Q 009380 304 DGLIRLMDAEK----E---------------VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL 364 (536)
Q Consensus 304 dg~I~vwd~~~----~---------------~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 364 (536)
|+.|.||.... . .+..+.+|+..|..++|+|++ .+|++++.|++|.+||.++.+.+..+.
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeeee
Confidence 99999999872 0 234456899999999999988 899999999999999999999999999
Q ss_pred ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC--CCcceeecccCceeEEEEccCCCeEEEEeC----CCcE
Q 009380 365 LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK--PEPMKVLSHKRAVHSAYFSPSGSSLATTSF----DDTI 438 (536)
Q Consensus 365 ~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~--~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~----dg~I 438 (536)
+|...|..+.|.|-| ++||+-+.|++|+||++.+..... ..+.........+..+.|||||++|++... -.++
T Consensus 169 ~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred cccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 999999999999988 799999999999999976632111 111111223456788999999999998753 3458
Q ss_pred EEEeCCCCCcceEE-eccCCCCceeeeeEEEEcC-----C--------CC----EEEEEcCCCcEEEEcCCccccceecc
Q 009380 439 GIWSGVNFENTSMI-HHNNQTGRWISSFRAIWGW-----D--------DS----CVFIGNMTRTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 439 ~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~-----~--------g~----~l~~gs~dg~I~v~d~~~~~~~~~l~ 500 (536)
.|.+-.+++.-..+ .|..+ +.+ +.|+| . .. .+|+|+.|++|.||.....+++..+.
T Consensus 248 ~IieR~tWk~~~~LvGH~~p----~ev--vrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~ 321 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLVGHSAP----VEV--VRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH 321 (942)
T ss_pred EEEecCCceeeeeeecCCCc----eEE--EEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh
Confidence 88887777654444 44332 222 44555 1 11 68899999999999998888876665
Q ss_pred CCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 501 SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 501 ~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
.-....+ ..++|+| ||-.|..+|.||+|.+..++
T Consensus 322 ~lf~~SI-~DmsWsp-dG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 322 NLFNKSI-VDMSWSP-DGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred hhhcCce-eeeeEcC-CCCeEEEEecCCeEEEEEcc
Confidence 4344444 5899999 78999999999999998764
No 91
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-26 Score=207.55 Aligned_cols=251 Identities=18% Similarity=0.252 Sum_probs=203.5
Q ss_pred CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-CCCceeEEEecCCCCCEEEEEEC--CCeE
Q 009380 273 NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEG--QGGL 349 (536)
Q Consensus 273 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~--dg~i 349 (536)
.....+....+.|.++.|+++| ..|++++.|.+|++||..+++...... ....+..++|.... +.++.++. |.+|
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~-~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS-NTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccCCCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC-ceEEEccCCCCCce
Confidence 3445566667889999999999 999999999999999999987765554 55688888887766 55655555 7899
Q ss_pred EEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeE
Q 009380 350 NIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSL 429 (536)
Q Consensus 350 ~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 429 (536)
+..++.+.+.++.|.+|...|++++.+|-+ ..|++++.|++|++||+|..+ +.... +...-..++|+|.|-++
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~-----cqg~l-~~~~~pi~AfDp~GLif 155 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKK-----CQGLL-NLSGRPIAAFDPEGLIF 155 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCC-----CceEE-ecCCCcceeECCCCcEE
Confidence 999999999999999999999999999976 799999999999999999743 22222 22333458999999999
Q ss_pred EEEeCCCcEEEEeCCCC--CcceEEecc-CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceee
Q 009380 430 ATTSFDDTIGIWSGVNF--ENTSMIHHN-NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISA 506 (536)
Q Consensus 430 ~t~s~dg~I~iwd~~~~--~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~ 506 (536)
|++...+.|++||++.. .+..++... .....|-. +.|||||++++.++..+.+++.|.-+|..+.++..+....
T Consensus 156 A~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~---l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~ 232 (311)
T KOG1446|consen 156 ALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTD---LEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG 232 (311)
T ss_pred EEecCCCeEEEEEecccCCCCceeEccCCCCccceee---eEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC
Confidence 99998889999999976 345555443 22233322 7799999999999999999999999999988888754433
Q ss_pred -eeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 507 -IPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 507 -~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
.+...+|.| |+.++++|+.||+|++|+++
T Consensus 233 ~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 233 NLPLSATFTP-DSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred CcceeEEECC-CCcEEEEecCCCcEEEEEcC
Confidence 456788889 78999999999999999974
No 92
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.2e-26 Score=194.46 Aligned_cols=289 Identities=15% Similarity=0.138 Sum_probs=221.2
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCC------C--CCC---ceEEeccCCCCEEEEEEecCCCCEEEEEE
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQ------D--EDN---GIYLFRTHLGPISGIVTQQYCLSKIFTSC 302 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~------~--~~~---~~~~~~~h~~~V~~l~~~~~~~~~l~s~s 302 (536)
...|.+++|+| .|.+.++|+...+++|-....-. + ... ....-+.|.+.|.|.+|+|+| .+|++|+
T Consensus 32 sqairav~fhp--~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g-eliatgs 108 (350)
T KOG0641|consen 32 SQAIRAVAFHP--AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG-ELIATGS 108 (350)
T ss_pred hhheeeEEecC--CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc-CeEEecC
Confidence 45699999999 99999999999999987543210 0 011 123445789999999999999 9999999
Q ss_pred CCCeEEEEECCCCe------EEEeecCCCceeEEEecCC---CCCEEEEEE-CCCeEEEEECCCCccceeEeccCCCeEE
Q 009380 303 YDGLIRLMDAEKEV------FDLVYSSEYAVFSLSQQPN---NVNTLYFGE-GQGGLNIWDVRSRKSATEWLLHEARINT 372 (536)
Q Consensus 303 ~dg~I~vwd~~~~~------~~~~~~~~~~i~~l~~~~~---~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~h~~~i~~ 372 (536)
.|.+|++.-++... -..+.-|++.|..++|..+ +..+|++++ .|..|++-|-..|+..+.+.+|.+.|.+
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila 188 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA 188 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence 99999998776533 2345568899999999643 335666654 5788999999999999999999999987
Q ss_pred E-EEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec---ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc
Q 009380 373 I-DFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS---HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN 448 (536)
Q Consensus 373 i-~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~---~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~ 448 (536)
+ .|+ + .+|++|+.|.+|++||+|-..+....-..+.+ ....|.+++..|.|++|++|..|....+||++.+..
T Consensus 189 lyswn--~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 189 LYSWN--G-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred EEEec--C-cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence 7 454 4 69999999999999999975432211111111 235789999999999999999999999999999988
Q ss_pred ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc----cceeccCCceeeeeeeEeecCCCCCEEEEE
Q 009380 449 TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR----SVATLQSPYISAIPCRFHAHPHQVGTLAGA 524 (536)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~----~~~~l~~~~~~~~~~~~~~~p~~~~~lasg 524 (536)
++.+.... ..+.+ +.|+|...|+++++.|..|++-|+...- .+..+..|...++ .+.|||.+ --+++.
T Consensus 266 iq~f~phs---adir~--vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i--~~rwh~~d-~sfiss 337 (350)
T KOG0641|consen 266 IQRFHPHS---ADIRC--VRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAI--QCRWHPQD-FSFISS 337 (350)
T ss_pred eeeeCCCc---cceeE--EEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceE--EEEecCcc-ceeeec
Confidence 88774322 23343 6699999999999999999999987641 1222233444454 56899976 778999
Q ss_pred ccCCeEEEEecC
Q 009380 525 TGGGQVYVWTSD 536 (536)
Q Consensus 525 s~Dg~v~iW~~d 536 (536)
+.|.++.+|-++
T Consensus 338 sadkt~tlwa~~ 349 (350)
T KOG0641|consen 338 SADKTATLWALN 349 (350)
T ss_pred cCcceEEEeccC
Confidence 999999999763
No 93
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.2e-26 Score=205.45 Aligned_cols=281 Identities=15% Similarity=0.139 Sum_probs=219.6
Q ss_pred cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM 310 (536)
Q Consensus 231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw 310 (536)
..-.+.|.+|+|||. ...++++|+.||+|++|+++... ...-.....|.++|.+++|+.+| ..+++|+.|+.+++|
T Consensus 24 ~pP~DsIS~l~FSP~-~~~~~~A~SWD~tVR~wevq~~g--~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQ-ADNLLAAGSWDGTVRIWEVQNSG--QLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLW 99 (347)
T ss_pred CCcccchheeEeccc-cCceEEecccCCceEEEEEecCC--cccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEE
Confidence 344678999999994 55678899999999999998742 12225667799999999999999 999999999999999
Q ss_pred ECCCCeEEEeecCCCceeEEEecCCCC-CEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC
Q 009380 311 DAEKEVFDLVYSSEYAVFSLSQQPNNV-NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD 389 (536)
Q Consensus 311 d~~~~~~~~~~~~~~~i~~l~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d 389 (536)
|+.+++...+-.|+.+|.++.|-+... .+|++|++|.+|+.||+|...++.+++ ..+.++++..-. -+++.+..+
T Consensus 100 DL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~ 175 (347)
T KOG0647|consen 100 DLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLY---PMAVVATAE 175 (347)
T ss_pred EccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccC---ceeEEEecC
Confidence 999999999999999999999987651 389999999999999999999998887 467788887753 367778889
Q ss_pred CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC--CcceEEeccCC---CCc-eee
Q 009380 390 GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF--ENTSMIHHNNQ---TGR-WIS 463 (536)
Q Consensus 390 g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~--~~~~~~~~~~~---~~~-~~~ 463 (536)
+.|.+|+|+++.... ........-.+.||+..++....+.|+-.|.+.|..+... +.-..++.+.. ... ...
T Consensus 176 r~i~vynL~n~~te~--k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEF--KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred CcEEEEEcCCCcchh--hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 999999998753111 1111234567899999998888899999999999999876 33344432221 111 233
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEE
Q 009380 464 SFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA 524 (536)
Q Consensus 464 ~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasg 524 (536)
+-.++|+|.-..|++.+.||++.+||-.....+.+.+.+...+.+| +|+. +|.++|-+
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc--~fn~-~G~ifaYA 311 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCC--SFNR-NGSIFAYA 311 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCcccee--EecC-CCCEEEEE
Confidence 3457899998899999999999999998888888877766666544 4443 46666644
No 94
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.9e-27 Score=230.86 Aligned_cols=262 Identities=17% Similarity=0.244 Sum_probs=222.2
Q ss_pred cccceEEecccccCccc-cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEecc-CCCCEEEEE
Q 009380 212 EVGSCVDIGSLTLKPEN-IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT-HLGPISGIV 289 (536)
Q Consensus 212 ~~dg~v~lw~~~~~~~~-~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~ 289 (536)
+.+..|+||+-...... +...+.+.|+++.|++ +|.+|++|..+|.|.|||... ...+..+.+ |...|.+++
T Consensus 194 alg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~--~G~~LavG~~~g~v~iwD~~~----~k~~~~~~~~h~~rvg~la 267 (484)
T KOG0305|consen 194 ALGQSVYLWSASSGSVTELCSFGEELVTSVKWSP--DGSHLAVGTSDGTVQIWDVKE----QKKTRTLRGSHASRVGSLA 267 (484)
T ss_pred EecceEEEEecCCCceEEeEecCCCceEEEEECC--CCCEEEEeecCCeEEEEehhh----ccccccccCCcCceeEEEe
Confidence 34458999997555532 3344489999999999 999999999999999999987 677888888 999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEECCCCeEE--EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC
Q 009380 290 TQQYCLSKIFTSCYDGLIRLMDAEKEVFD--LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE 367 (536)
Q Consensus 290 ~~~~~~~~l~s~s~dg~I~vwd~~~~~~~--~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~ 367 (536)
|+. ..+.+|+.|+.|..+|++..... ...+|...|..+.|++++ +++++|+.|+.+.|||.....+...+..|.
T Consensus 268 W~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~ 343 (484)
T KOG0305|consen 268 WNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHT 343 (484)
T ss_pred ccC---ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccc
Confidence 993 78999999999999999875432 255789999999999999 899999999999999998888999999999
Q ss_pred CCeEEEEEecCCCCEEEEEe--CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe--CCCcEEEEeC
Q 009380 368 ARINTIDFNPRNPNIMATSS--TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS--FDDTIGIWSG 443 (536)
Q Consensus 368 ~~i~~i~~~p~~~~~l~s~s--~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s--~dg~I~iwd~ 443 (536)
..|..++|+|....+||+|+ .|+.|++||..++ ..+........|.++.|++..+-|+++. .++.|.||+.
T Consensus 344 aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-----~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 344 AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-----ARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-----cEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence 99999999999888999986 5899999999986 3455556788999999999887777654 5678999999
Q ss_pred CCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 444 VNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
.+.+.+..+.. +...++.++++|||..+++|+.|.++++|++-+.
T Consensus 419 ps~~~~~~l~g-----H~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 419 PSMKLVAELLG-----HTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cccceeeeecC-----CcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 98777766532 1223556889999999999999999999998775
No 95
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4.1e-26 Score=204.64 Aligned_cols=275 Identities=16% Similarity=0.179 Sum_probs=218.2
Q ss_pred ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEE
Q 009380 232 IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD 311 (536)
Q Consensus 232 ~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd 311 (536)
...+.|++|.|+| .+..|++++.||.+++|++.. . .+...-.|..++.+++|.++ ..+++|+.||.|+.+|
T Consensus 11 pP~d~IS~v~f~~--~~~~LLvssWDgslrlYdv~~----~-~l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 11 PPEDGISSVKFSP--SSSDLLVSSWDGSLRLYDVPA----N-SLKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYD 81 (323)
T ss_pred CChhceeeEEEcC--cCCcEEEEeccCcEEEEeccc----h-hhhhheecCCceeeeeccCC--ceEEEeccCceEEEEE
Confidence 3357899999998 778888899999999999986 3 33444458999999999985 6899999999999999
Q ss_pred CCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380 312 AEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGT 391 (536)
Q Consensus 312 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~ 391 (536)
++++....+-.|..+|.||.+.+.. +.+++|++|++|++||.+.......+. ....|.++... + +.|+.|+.|..
T Consensus 82 ln~~~~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g-~~LvVg~~~r~ 156 (323)
T KOG1036|consen 82 LNTGNEDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--G-NRLVVGTSDRK 156 (323)
T ss_pred ecCCcceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--C-CEEEEeecCce
Confidence 9999999999999999999999876 799999999999999999866666665 45589999887 3 67888889999
Q ss_pred EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC----CcceEEe-ccC---CCCceee
Q 009380 392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF----ENTSMIH-HNN---QTGRWIS 463 (536)
Q Consensus 392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~----~~~~~~~-~~~---~~~~~~~ 463 (536)
|.+||+|+... .........+..+.++++-|++.=+++++-||.|.+=.+... +....+. |.. .......
T Consensus 157 v~iyDLRn~~~--~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 157 VLIYDLRNLDE--PFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred EEEEEcccccc--hhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 99999999752 222233356778999999998888999999999888666544 2333332 211 1111122
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEc
Q 009380 464 SFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT 525 (536)
Q Consensus 464 ~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs 525 (536)
+-.++|+|-...|++|+.||.|.+||..+.+.+.++.....++. .++|+- +|..||.++
T Consensus 235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~--slsfs~-dG~~LAia~ 293 (323)
T KOG1036|consen 235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSIS--SLSFSM-DGSLLAIAS 293 (323)
T ss_pred eceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceE--EEEecc-CCCeEEEEe
Confidence 23478999988999999999999999999999988876544443 566665 688999886
No 96
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=2.8e-27 Score=222.42 Aligned_cols=249 Identities=19% Similarity=0.287 Sum_probs=202.7
Q ss_pred ccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe--E---------EEeecCCCceeEEEecCCCCCEEEEEECCC
Q 009380 279 RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV--F---------DLVYSSEYAVFSLSQQPNNVNTLYFGEGQG 347 (536)
Q Consensus 279 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~--~---------~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg 347 (536)
..|.+.|+.+.+.|+.+..+++.+..+.|.|||..+.. . ..+.+|...-.+++|++...-.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 46899999999999998999999999999999986521 1 256678877888999999888999999999
Q ss_pred eEEEEECCCCcc-------ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEE
Q 009380 348 GLNIWDVRSRKS-------ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSA 420 (536)
Q Consensus 348 ~i~i~d~~~~~~-------~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l 420 (536)
+|++||+..... ...+.+|...|..++|++....+|++++.|+.+.|||+|++ .........+|.+.|+|+
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--TSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--CCCCcccccccCCceeEE
Confidence 999999985422 45567999999999999998899999999999999999973 233555666899999999
Q ss_pred EEcc-CCCeEEEEeCCCcEEEEeCCCCCc-ceEEeccCCCCceeeeeEEEEcCCC-CEEEEEcCCCcEEEEcCCcccc--
Q 009380 421 YFSP-SGSSLATTSFDDTIGIWSGVNFEN-TSMIHHNNQTGRWISSFRAIWGWDD-SCVFIGNMTRTVEVISPAQRRS-- 495 (536)
Q Consensus 421 ~~sp-~g~~l~t~s~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~gs~dg~I~v~d~~~~~~-- 495 (536)
+|+| ++..|||||.|++|.+||+++... +..+... .-.++++.|+|.. ..|++++.|+.+.|||+..-..
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-----~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-----EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-----CcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 9999 778899999999999999998754 3333221 2245668999974 5688999999999999854211
Q ss_pred -----------ceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 496 -----------VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 496 -----------~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
+..+.++|...+ ..++|+|++...|++.++|+.+.||+.
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV-~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKV-SDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred ChhhhccCCcceeEEecCccccc-ccccCCCCCCeEEEEecCCceEEEeec
Confidence 123344455554 689999999889999999999999985
No 97
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.2e-26 Score=235.51 Aligned_cols=230 Identities=17% Similarity=0.199 Sum_probs=179.7
Q ss_pred cccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC----CCceEEeccCCCC
Q 009380 210 KIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE----DNGIYLFRTHLGP 284 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~----~~~~~~~~~h~~~ 284 (536)
.++..+.+.||++... +...+.+|.+.|.+++|+|. ++.+|++|+.||+|+||++.+.... ...+..+.+|...
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~-~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPC-FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 3566788999987433 33446789999999999993 2789999999999999999753210 1244567899999
Q ss_pred EEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe
Q 009380 285 ISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL 364 (536)
Q Consensus 285 V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 364 (536)
|.+++|+|++..+|++++.|++|++||++++.....+.+...|.+++|++++ .+|++++.|+.|++||+++++.+.++.
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 9999999998445689999999999999998766656677889999999998 799999999999999999999999999
Q ss_pred ccCCCeEEEE-----EecCCCCEEEEEeCCC----cEEEEeCCCCCCCCCCcceeecc---cCceeEEEEccCCCeEEEE
Q 009380 365 LHEARINTID-----FNPRNPNIMATSSTDG----TACIWDLRSMATDKPEPMKVLSH---KRAVHSAYFSPSGSSLATT 432 (536)
Q Consensus 365 ~h~~~i~~i~-----~~p~~~~~l~s~s~dg----~i~iwdl~~~~~~~~~~~~~~~~---~~~v~~l~~sp~g~~l~t~ 432 (536)
+|.+.+.+.. |++++ .+|++++.|+ .|+|||++... .++....+ .+.+......++|.++++|
T Consensus 207 gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~----~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTT----SALVTMSIDNASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred cccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCC----CceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence 9988754433 34666 5777777664 79999999743 33333333 3333344445568899999
Q ss_pred eCCCcEEEEeCCCC
Q 009380 433 SFDDTIGIWSGVNF 446 (536)
Q Consensus 433 s~dg~I~iwd~~~~ 446 (536)
+.|++|++|++..+
T Consensus 282 kGD~tIr~~e~~~~ 295 (568)
T PTZ00420 282 KGDGNCRYYQHSLG 295 (568)
T ss_pred ECCCeEEEEEccCC
Confidence 99999999999765
No 98
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=1.7e-25 Score=212.31 Aligned_cols=341 Identities=12% Similarity=0.116 Sum_probs=258.3
Q ss_pred cccccceecccccceeeeecCCCCcccccccccccccccccccceEEeccc-ccCccccccccCCceEEEEEEecCCccE
Q 009380 172 DENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSL-TLKPENIARIMPGRITQMKFLPCSDVRM 250 (536)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~-~~~~~~~~~~~~~~I~~v~~~p~~~~~~ 250 (536)
+...+..+.||.+.|.|+.++|+--.++........ .....-.+++||. .+....++-.....|+|++|++...|.+
T Consensus 93 ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~--g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~ 170 (626)
T KOG2106|consen 93 EERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTS--GRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSL 170 (626)
T ss_pred hhhhcccccCCCCceEEEeecCCceeeccCcccccC--CCcCCCeeeecccccceeeeeeccccccceeeeecccCCCce
Confidence 345677889999999999999998888844222111 1122247899994 4444555556688999999999877888
Q ss_pred EEEEe--CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-----C
Q 009380 251 VVAGS--KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-----S 323 (536)
Q Consensus 251 l~tg~--~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-----~ 323 (536)
|+.-+ .+..+.+||... .......+.....|....|+|.+++++++++ .|.+.+|+++++.+....+ .
T Consensus 171 l~~vD~s~~h~lSVWdWqk----~~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~e 245 (626)
T KOG2106|consen 171 LCAVDDSNPHMLSVWDWQK----KAKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKRE 245 (626)
T ss_pred EEEecCCCccccchhhchh----hhccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeecccccc
Confidence 87764 345688999987 4445555666778999999999978888887 6789999999876544331 2
Q ss_pred CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC-
Q 009380 324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT- 402 (536)
Q Consensus 324 ~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~- 402 (536)
..-|.|++|.+++ -+++|..+|.|.||+..+.+..+....|.+.|.+++...+| .|++|+.|+.|..||-.-.+.
T Consensus 246 kk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r 321 (626)
T KOG2106|consen 246 KKFVLCVTFLENG--DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLR 321 (626)
T ss_pred ceEEEEEEEcCCC--CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccccccc
Confidence 3689999999998 58999999999999998888877777999999999999877 577799999999998321110
Q ss_pred -----------------------------------CCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 009380 403 -----------------------------------DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE 447 (536)
Q Consensus 403 -----------------------------------~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~ 447 (536)
.....+...+|....+.++.+|+...++|++.|+.+++|+ ..+
T Consensus 322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k 399 (626)
T KOG2106|consen 322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK 399 (626)
T ss_pred cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc
Confidence 0111223456888899999999999999999999999999 344
Q ss_pred cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccC
Q 009380 448 NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG 527 (536)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D 527 (536)
......... .. -++.|+|.| .+++|+..|...|.|.++.. +-++... ...+ ..+.++| +|.+||.|+.|
T Consensus 400 ~~wt~~~~d----~~--~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~-lv~~~~d-~~~l-s~v~ysp-~G~~lAvgs~d 468 (626)
T KOG2106|consen 400 LEWTKIIED----PA--ECADFHPSG-VVAVGTATGRWFVLDTETQD-LVTIHTD-NEQL-SVVRYSP-DGAFLAVGSHD 468 (626)
T ss_pred eeEEEEecC----ce--eEeeccCcc-eEEEeeccceEEEEecccce-eEEEEec-CCce-EEEEEcC-CCCEEEEecCC
Confidence 443332222 12 237799999 99999999999999999954 4444443 3333 4688999 78999999999
Q ss_pred CeEEEEecC
Q 009380 528 GQVYVWTSD 536 (536)
Q Consensus 528 g~v~iW~~d 536 (536)
+.|+||.++
T Consensus 469 ~~iyiy~Vs 477 (626)
T KOG2106|consen 469 NHIYIYRVS 477 (626)
T ss_pred CeEEEEEEC
Confidence 999999864
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.4e-26 Score=216.05 Aligned_cols=282 Identities=12% Similarity=0.188 Sum_probs=219.2
Q ss_pred cceecccccceeeeecCCCCcccccccccccccccccccceEEeccccc------------------Cccccc-cccCCc
Q 009380 176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL------------------KPENIA-RIMPGR 236 (536)
Q Consensus 176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~------------------~~~~~~-~~~~~~ 236 (536)
...+..|.-.+.+|.++++.+..... +.+|.|.=|+... .+.... +.|...
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsa----------sk~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~ke 204 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSA----------SKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKE 204 (479)
T ss_pred ceeeccccCcceEEEeeccccceeec----------CCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccce
Confidence 45677899999999999999877743 4444555454311 112222 378889
Q ss_pred eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe
Q 009380 237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV 316 (536)
Q Consensus 237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~ 316 (536)
|.+++.+| ||+||++|+.|..|.||+.++ ...+..+.+|.+.|.+++|-... +.|++++.|.+|++|+++...
T Consensus 205 il~~avS~--Dgkylatgg~d~~v~Iw~~~t----~ehv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 205 ILTLAVSS--DGKYLATGGRDRHVQIWDCDT----LEHVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred eEEEEEcC--CCcEEEecCCCceEEEecCcc----cchhhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhH
Confidence 99999999 999999999999999999998 77888899999999999998765 899999999999999998754
Q ss_pred -EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380 317 -FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIW 395 (536)
Q Consensus 317 -~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw 395 (536)
...+++|...|.+|...... ..+.+|+.|+++++|++. ......+.+|.+.+-|++|..+ ..|++|+.+|.|.+|
T Consensus 278 ~vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLW 353 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALW 353 (479)
T ss_pred HHHHHhCCccceeeechhccc-ceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc--cceeeccCCceEEEe
Confidence 45678999999999998877 788888899999999993 3334566789999999999964 479999999999999
Q ss_pred eCCCCCCCCCC-----cc---eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEE
Q 009380 396 DLRSMATDKPE-----PM---KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRA 467 (536)
Q Consensus 396 dl~~~~~~~~~-----~~---~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (536)
++-+.+..... +. ....+...|++++..|...++++|+.+|.|++|-+.++-....+-.......++.. +
T Consensus 354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNs--l 431 (479)
T KOG0299|consen 354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNS--L 431 (479)
T ss_pred eecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEE--E
Confidence 99875421100 00 00122348999999999999999999999999998876332222222234445555 6
Q ss_pred EEcCCCCEEEEEc
Q 009380 468 IWGWDDSCVFIGN 480 (536)
Q Consensus 468 ~~s~~g~~l~~gs 480 (536)
+|+++|+.|++|-
T Consensus 432 ~f~~sgk~ivagi 444 (479)
T KOG0299|consen 432 AFSNSGKRIVAGI 444 (479)
T ss_pred EEccCCCEEEEec
Confidence 6899999777763
No 100
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.9e-26 Score=226.61 Aligned_cols=281 Identities=16% Similarity=0.213 Sum_probs=228.6
Q ss_pred cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc---cccccccCCceEE-EEEEecCCcc
Q 009380 174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP---ENIARIMPGRITQ-MKFLPCSDVR 249 (536)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~---~~~~~~~~~~I~~-v~~~p~~~~~ 249 (536)
.+...+.||.+.|..|.+..... +..++.||++++|+-..+. ......|.+-|.+ ++|.+. ++-
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~~-----------i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~-~~~ 72 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGVC-----------IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES-DKG 72 (745)
T ss_pred eeEEEeccCccchheeEecCCeE-----------EeecCCCCceeeeeccCcccccceecccCcceeeccceeccc-cCc
Confidence 45567899999998887655553 3356788999999863332 2345667777877 888873 667
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeE
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFS 329 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~ 329 (536)
.|++|+.|++|.+|.+.. ..++..+.+|...|+|+....++ . ++|||.|.++++|-...-... ..+|...|++
T Consensus 73 ~l~~g~~D~~i~v~~~~~----~~P~~~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l~~~-l~gH~asVWA 145 (745)
T KOG0301|consen 73 RLVVGGMDTTIIVFKLSQ----AEPLYTLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGELVYS-LQGHTASVWA 145 (745)
T ss_pred ceEeecccceEEEEecCC----CCchhhhhccccceeeeecCCcC-c-eEecccccceEEecchhhhcc-cCCcchheee
Confidence 799999999999999998 78999999999999999988876 4 999999999999987654333 6789999999
Q ss_pred EEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcce
Q 009380 330 LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMK 409 (536)
Q Consensus 330 l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~ 409 (536)
+...|.+ .+++|+.|.+|++|.- ++.+++|.+|.+.|+.+++.+++ .|++|+.||.|++|++.. ..+..
T Consensus 146 v~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~g-----e~l~~ 214 (745)
T KOG0301|consen 146 VASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLDG-----EVLLE 214 (745)
T ss_pred eeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC--CeEeecCCceEEEEeccC-----ceeee
Confidence 9999986 8999999999999974 78899999999999999999965 589999999999999943 36778
Q ss_pred eecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEc
Q 009380 410 VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVIS 489 (536)
Q Consensus 410 ~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d 489 (536)
..+|..-|.+++..+++..|++++.|++++||+.. ++...+.+... .++. +.+-++| -|++|+.||.|+||.
T Consensus 215 ~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt---siWs--a~~L~Ng-DIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 215 MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT---SIWS--AKVLLNG-DIVVGGSDGRVRVFT 286 (745)
T ss_pred eeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc---ceEE--EEEeeCC-CEEEeccCceEEEEE
Confidence 88999999999988888899999999999999876 66666655331 1222 3333445 478888899999998
Q ss_pred CCc
Q 009380 490 PAQ 492 (536)
Q Consensus 490 ~~~ 492 (536)
...
T Consensus 287 ~~k 289 (745)
T KOG0301|consen 287 VDK 289 (745)
T ss_pred ecc
Confidence 763
No 101
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.9e-26 Score=225.02 Aligned_cols=307 Identities=15% Similarity=0.167 Sum_probs=233.0
Q ss_pred ccccccceEEecccccCcc-------ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC
Q 009380 209 EKIEVGSCVDIGSLTLKPE-------NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH 281 (536)
Q Consensus 209 ~~~~~dg~v~lw~~~~~~~-------~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h 281 (536)
++++.||.|++|+...... ...+.|.+.|+.++... +++.|++++.|-+|++|+..... ..+..++..|
T Consensus 41 fTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~--~~~tlIS~SsDtTVK~W~~~~~~--~~c~stir~H 116 (735)
T KOG0308|consen 41 FTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG--NGKTLISASSDTTVKVWNAHKDN--TFCMSTIRTH 116 (735)
T ss_pred EecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc--CCCceEEecCCceEEEeecccCc--chhHhhhhcc
Confidence 4789999999999744322 23467999999999998 89999999999999999998742 3678889999
Q ss_pred CCCEEEEEE-ecCCCCEEEEEECCCeEEEEECCCCeE------------EEeecCCCceeEEEecCCCCCEEEEEECCCe
Q 009380 282 LGPISGIVT-QQYCLSKIFTSCYDGLIRLMDAEKEVF------------DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG 348 (536)
Q Consensus 282 ~~~V~~l~~-~~~~~~~l~s~s~dg~I~vwd~~~~~~------------~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~ 348 (536)
...|.|+++ -++. .++++|+.|+.|.+||++++.. ....++...|++++.++.+ ..|++|+..+.
T Consensus 117 ~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~ 194 (735)
T KOG0308|consen 117 KDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKD 194 (735)
T ss_pred cchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccc
Confidence 999999999 6665 8999999999999999997622 1112567899999999998 89999999999
Q ss_pred EEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCe
Q 009380 349 LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSS 428 (536)
Q Consensus 349 i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~ 428 (536)
|++||.++.+.+..+.+|...|.++-.++|| ..++++|.||+|++||+..- ..+..+..|...|+++..+|+-.+
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQ----rCl~T~~vH~e~VWaL~~~~sf~~ 269 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQ----RCLATYIVHKEGVWALQSSPSFTH 269 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeecccc----ceeeeEEeccCceEEEeeCCCcce
Confidence 9999999999999999999999999999988 68999999999999999873 244456689999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc-------c------
Q 009380 429 LATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR-------S------ 495 (536)
Q Consensus 429 l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~-------~------ 495 (536)
+++|+.||.|..=|+++......+...... +.. ...+...+-+.+++.|+.|+-|...-.- .
T Consensus 270 vYsG~rd~~i~~Tdl~n~~~~tlick~daP---v~~--l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~ 344 (735)
T KOG0308|consen 270 VYSGGRDGNIYRTDLRNPAKSTLICKEDAP---VLK--LHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTD 344 (735)
T ss_pred EEecCCCCcEEecccCCchhheEeecCCCc---hhh--hhhccccCCceeeeccccceecCCccccccccCCCCCccccc
Confidence 999999999999999986443333211110 111 1112222233566667777777543211 0
Q ss_pred ------------ceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 496 ------------VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 496 ------------~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
-..++|.+. ...+.+ - ++.++++|-...|.+.+||+
T Consensus 345 ~~~~~~~~~~tp~~vi~Gg~a-i~k~~m--L-~dkRhVlTkDa~gnv~lwDI 392 (735)
T KOG0308|consen 345 SNNHSCDLTNTPDSVIPGGAA-IKKHAM--L-NDKRHVLTKDAKGNVALWDI 392 (735)
T ss_pred CCCccccccCCCceeccCchh-hhhhhh--h-cCcceEeeecCCCCEEEEEe
Confidence 001111100 000111 1 14579999999999999996
No 102
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=5.4e-26 Score=234.64 Aligned_cols=296 Identities=15% Similarity=0.163 Sum_probs=231.7
Q ss_pred eecccc-cceeeeecCCCCcccccccccccccccccccceEEeccccc--------C---cc--ccccccCCceEEEEEE
Q 009380 178 VIKDEF-NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL--------K---PE--NIARIMPGRITQMKFL 243 (536)
Q Consensus 178 ~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~--------~---~~--~~~~~~~~~I~~v~~~ 243 (536)
.+.+|. ..|-.+..+|||..++++ ...+||.+.+|+... . +. -....|.+.|+|+.|+
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTg--------Gq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S 78 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATG--------GQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS 78 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecC--------CccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEEC
Confidence 344554 346788999999999955 223888888997621 0 11 1224579999999999
Q ss_pred ecCCccEEEEEeCCCcEEEEECCCC--------------CCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEE
Q 009380 244 PCSDVRMVVAGSKLGNITFWNLDSQ--------------QDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRL 309 (536)
Q Consensus 244 p~~~~~~l~tg~~dg~v~iwd~~~~--------------~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~v 309 (536)
| ||.+||+|+.|+.|.||..... .+....+..+.+|...|..++|+|++ .+|++++.|++|.+
T Consensus 79 ~--dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsVii 155 (942)
T KOG0973|consen 79 P--DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVII 155 (942)
T ss_pred C--CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEE
Confidence 9 9999999999999999998730 01234778899999999999999998 99999999999999
Q ss_pred EECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc------CCCeEEEEEecCCCCE
Q 009380 310 MDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH------EARINTIDFNPRNPNI 382 (536)
Q Consensus 310 wd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h------~~~i~~i~~~p~~~~~ 382 (536)
|+..+.... .+.+|.+.|-.+.|.|-| .+|++-+.|++|++|++.+....+.+..+ ...+..+.|+||| ++
T Consensus 156 wn~~tF~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG-~~ 233 (942)
T KOG0973|consen 156 WNAKTFELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG-HH 233 (942)
T ss_pred EccccceeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc-Ce
Confidence 999987544 556899999999999999 89999999999999998776565555433 2357889999998 67
Q ss_pred EEEEeC----CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC-----CC------------eEEEEeCCCcEEEE
Q 009380 383 MATSST----DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS-----GS------------SLATTSFDDTIGIW 441 (536)
Q Consensus 383 l~s~s~----dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~-----g~------------~l~t~s~dg~I~iw 441 (536)
|++... -.++.|.+-.+.+ .-..+.+|..++.++.|+|. .+ .+|+|+.|++|.||
T Consensus 234 las~nA~n~~~~~~~IieR~tWk----~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW 309 (942)
T KOG0973|consen 234 LASPNAVNGGKSTIAIIERGTWK----VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW 309 (942)
T ss_pred ecchhhccCCcceeEEEecCCce----eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence 777542 2457777765532 45567799999999999982 11 67889999999999
Q ss_pred eCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc
Q 009380 442 SGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR 494 (536)
Q Consensus 442 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~ 494 (536)
.....+++..+.+- .+ ..++.++|+|||..|+++|.||+|.++.+...+
T Consensus 310 ~T~~~RPl~vi~~l--f~--~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 310 NTALPRPLFVIHNL--FN--KSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred ecCCCCchhhhhhh--hc--CceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 99777777666332 22 245568899999999999999999999987653
No 103
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=6.1e-27 Score=203.59 Aligned_cols=247 Identities=15% Similarity=0.147 Sum_probs=211.4
Q ss_pred eecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC
Q 009380 178 VIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL 257 (536)
Q Consensus 178 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d 257 (536)
++.||...|+.+....+.-.-+. +..|=+.++||.........-.|..-|.+++|+. |.++|++|+.+
T Consensus 54 tfeghkgavw~~~l~~na~~aas----------aaadftakvw~a~tgdelhsf~hkhivk~~af~~--ds~~lltgg~e 121 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAAS----------AAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQ--DSNYLLTGGQE 121 (334)
T ss_pred eeeccCcceeeeecCchhhhhhh----------hcccchhhhhhhhhhhhhhhhhhhheeeeEEecc--cchhhhccchH
Confidence 57899999999988887766553 3455577889975555555567888899999999 99999999999
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCC
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNV 337 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~ 337 (536)
..++|||++.. ..+...+.+|.+.|..+.|.... +.|+++++|++||+||.+++..........+|+++.++++|
T Consensus 122 kllrvfdln~p---~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG- 196 (334)
T KOG0278|consen 122 KLLRVFDLNRP---KAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG- 196 (334)
T ss_pred HHhhhhhccCC---CCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCC-
Confidence 99999999875 46677899999999999999887 89999999999999999999999999999999999999998
Q ss_pred CEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcce-eecccCc
Q 009380 338 NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMK-VLSHKRA 416 (536)
Q Consensus 338 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~-~~~~~~~ 416 (536)
.+ ++-...+.|.+||..+...+..+. -...|.+..++|.. .++++|+.|..++.||..++. .+-. ..+|.++
T Consensus 197 ~i-lTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~Tge----Ei~~~nkgh~gp 269 (334)
T KOG0278|consen 197 RI-LTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGE----EIGSYNKGHFGP 269 (334)
T ss_pred CE-EEEecCceeEEeccccccceeecc-CccccccccccCCC-ceEEecCcceEEEEEeccCCc----eeeecccCCCCc
Confidence 44 455556799999999988888776 45778999999976 799999999999999999975 3333 4689999
Q ss_pred eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc
Q 009380 417 VHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN 448 (536)
Q Consensus 417 v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~ 448 (536)
|.|+.|+|+|...++|+.||+|+||-+..++.
T Consensus 270 VhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 270 VHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred eEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 99999999999999999999999998765443
No 104
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=201.18 Aligned_cols=293 Identities=13% Similarity=0.124 Sum_probs=220.1
Q ss_pred ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC-CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE-DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
..+++|.+.|++++|+. ||++|++++.|+.|+||++.+-... ..+++.- -.-+.-+.+.|.||....++++-...+
T Consensus 80 ~~LKgH~~~vt~~~FsS--dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS--DGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEEcC--CCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCE
Confidence 45799999999999999 9999999999999999999863211 1111111 112356789999998777888888889
Q ss_pred EEEEECCCC---eEE----------EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEE
Q 009380 307 IRLMDAEKE---VFD----------LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTI 373 (536)
Q Consensus 307 I~vwd~~~~---~~~----------~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i 373 (536)
+++|.+.+. ... .-..|.-.+..+-...++ .+|++++.|..|.+||++ |+.+..+......-+..
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 999987542 111 111345566666666555 899999999999999998 88888888777777888
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCCCC----CCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC----
Q 009380 374 DFNPRNPNIMATSSTDGTACIWDLRSMATD----KPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN---- 445 (536)
Q Consensus 374 ~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~----~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~---- 445 (536)
+.+|+| .++++++.--.|++|.+--.+.. ....+.+.+|...|..++|+++...++|.+.||+++|||..-
T Consensus 235 avSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 235 AVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 999988 79999998889999997543321 134566779999999999999999999999999999999752
Q ss_pred CC---cceEEe--ccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCE
Q 009380 446 FE---NTSMIH--HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGT 520 (536)
Q Consensus 446 ~~---~~~~~~--~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~ 520 (536)
++ .+.... .....+ ..+++..+|+|+.|+++. ...+.+|..++++...+++..|...+ ..++|.| +|.+
T Consensus 314 ~qDpk~Lk~g~~pl~aag~---~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~I-s~is~~~-~g~~ 387 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGS---EPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTI-SSISYSS-DGKY 387 (420)
T ss_pred CCCchHhhcCCcchhhcCC---CceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCce-eeEEecC-CCcE
Confidence 11 122211 111111 223577899999888775 45799999999998888887777777 5689998 6799
Q ss_pred EEEEccCCeEEEE
Q 009380 521 LAGATGGGQVYVW 533 (536)
Q Consensus 521 lasgs~Dg~v~iW 533 (536)
++++++ ..+++.
T Consensus 388 ~atcGd-r~vrv~ 399 (420)
T KOG2096|consen 388 IATCGD-RYVRVI 399 (420)
T ss_pred Eeeecc-eeeeee
Confidence 999884 566654
No 105
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=1e-25 Score=197.91 Aligned_cols=288 Identities=17% Similarity=0.154 Sum_probs=226.9
Q ss_pred eecccccceeeeecCCCCcccccccccccccccccccceEEeccc-ccCccccccccCCceEEEEEEecCCccEEEEEeC
Q 009380 178 VIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSL-TLKPENIARIMPGRITQMKFLPCSDVRMVVAGSK 256 (536)
Q Consensus 178 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~-~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~ 256 (536)
.+.||+..+..+++..+|.+|.++ ..|....+|-. +.+..-...+|.+.|+|+.... +.+.+++|+.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFsc----------aKD~~~~vw~s~nGerlGty~GHtGavW~~Did~--~s~~liTGSA 72 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSC----------AKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW--DSKHLITGSA 72 (327)
T ss_pred ccccCccccceEEecCCCcEEEEe----------cCCCCceEEEecCCceeeeecCCCceEEEEEecC--Ccceeeeccc
Confidence 468999999999999999999965 66778888875 3344455789999999999998 8899999999
Q ss_pred CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC-----CCeEEEEECCC-------Ce-EEEeecC
Q 009380 257 LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY-----DGLIRLMDAEK-------EV-FDLVYSS 323 (536)
Q Consensus 257 dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~-----dg~I~vwd~~~-------~~-~~~~~~~ 323 (536)
|.++++||+.+ ++++..++. ..+|..+.|++++ ++++.+.. .+.|.++|++. .. ...+..+
T Consensus 73 D~t~kLWDv~t----Gk~la~~k~-~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 73 DQTAKLWDVET----GKQLATWKT-NSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP 146 (327)
T ss_pred cceeEEEEcCC----CcEEEEeec-CCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence 99999999998 778887764 5789999999998 77776643 47899999983 23 4556667
Q ss_pred CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009380 324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT 402 (536)
Q Consensus 324 ~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~ 402 (536)
+..++.+-|.|-+ .+|++|..||.|.+||.++++. +..-..|...|+.|+++|+. .+|+++|.|.+-++||+++.
T Consensus 147 ~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl-- 222 (327)
T KOG0643|consen 147 DSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTL-- 222 (327)
T ss_pred ccceeeeeecccC-CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc-ceEEecccCccceeeeccce--
Confidence 8999999999998 8999999999999999999855 55557899999999999987 79999999999999999985
Q ss_pred CCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEE--EeCCCCCcceEEec---------cCCCCceeeeeEEEEcC
Q 009380 403 DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI--WSGVNFENTSMIHH---------NNQTGRWISSFRAIWGW 471 (536)
Q Consensus 403 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~i--wd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~s~ 471 (536)
.++..+....+|++.+++|....++.|+.-...-| =+.+.++-...+.| ...+-.++.. ++|+|
T Consensus 223 ---~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINs--vAfhP 297 (327)
T KOG0643|consen 223 ---EVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINS--VAFHP 297 (327)
T ss_pred ---eeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcce--eEECC
Confidence 56777788899999999997776776654322222 22222221111111 0111112333 78999
Q ss_pred CCCEEEEEcCCCcEEEEcCCc
Q 009380 472 DDSCVFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 472 ~g~~l~~gs~dg~I~v~d~~~ 492 (536)
+|+..++|+.||.|++.....
T Consensus 298 dGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 298 DGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CCcccccCCCCceEEEEEecc
Confidence 999999999999999986544
No 106
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.2e-26 Score=199.65 Aligned_cols=255 Identities=16% Similarity=0.235 Sum_probs=202.1
Q ss_pred ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec--CCCCEEEEEECCC
Q 009380 228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ--YCLSKIFTSCYDG 305 (536)
Q Consensus 228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~~l~s~s~dg 305 (536)
.+...|.+.|.++...- .|+.|||++.|++|+|+.+..... ...+..+.+|.++|+.++|.. .| .+|++|++||
T Consensus 5 ~idt~H~D~IHda~lDy--ygkrlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDg 80 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDY--YGKRLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDG 80 (299)
T ss_pred ehhhhhhhhhhHhhhhh--hcceeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccC-cEeeEeecCc
Confidence 34567888888888777 889999999999999999987532 367889999999999999965 45 9999999999
Q ss_pred eEEEEECCCCeEEEee---cCCCceeEEEecCCCC-CEEEEEECCCeEEEEECCCC-c--cceeEeccCCCeEEEEEecC
Q 009380 306 LIRLMDAEKEVFDLVY---SSEYAVFSLSQQPNNV-NTLYFGEGQGGLNIWDVRSR-K--SATEWLLHEARINTIDFNPR 378 (536)
Q Consensus 306 ~I~vwd~~~~~~~~~~---~~~~~i~~l~~~~~~~-~~l~~g~~dg~i~i~d~~~~-~--~~~~~~~h~~~i~~i~~~p~ 378 (536)
.|.||.-+++.....+ .|...|++++|.|.+. -+|++++.||.|.|++.+.. . .......|.-.|++++|.|.
T Consensus 81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence 9999999998665444 5788999999998753 46788999999999998864 2 13345589999999999985
Q ss_pred ---C----------CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCC----CeEEEEeCCCcEEEE
Q 009380 379 ---N----------PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSG----SSLATTSFDDTIGIW 441 (536)
Q Consensus 379 ---~----------~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g----~~l~t~s~dg~I~iw 441 (536)
| .+.|++|+.|..|+||+...+. -..-..+.+|...|..++|.|.- .+|++++.||++.||
T Consensus 161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred CCCccccccCcccccceeeccCCccceeeeecCCcc--hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 2 1469999999999999998853 11223366899999999999943 589999999999999
Q ss_pred eCCCCCcce--EEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380 442 SGVNFENTS--MIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 442 d~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~ 492 (536)
..+...... ++.+. .. -...++.||..|++|++++.|+.|.+|.-..
T Consensus 239 t~~~e~e~wk~tll~~--f~--~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEE--FP--DVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EecCccCccccccccc--CC--cceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 876321111 12121 11 2345588999999999999999999997543
No 107
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=3.3e-26 Score=216.70 Aligned_cols=282 Identities=13% Similarity=0.206 Sum_probs=227.0
Q ss_pred ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec--cCCCCEEEEEEecCCCCEEEEEECCCeEEE
Q 009380 232 IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR--THLGPISGIVTQQYCLSKIFTSCYDGLIRL 309 (536)
Q Consensus 232 ~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg~I~v 309 (536)
.|.+-|.++.++. ..+.+.||++ |.|+|||+..... ...+..+. .....|.++...|++ +.|++|++-.++.|
T Consensus 417 ~HGEvVcAvtIS~--~trhVyTgGk-gcVKVWdis~pg~-k~PvsqLdcl~rdnyiRSckL~pdg-rtLivGGeastlsi 491 (705)
T KOG0639|consen 417 AHGEVVCAVTISN--PTRHVYTGGK-GCVKVWDISQPGN-KSPVSQLDCLNRDNYIRSCKLLPDG-RTLIVGGEASTLSI 491 (705)
T ss_pred ccCcEEEEEEecC--CcceeEecCC-CeEEEeeccCCCC-CCccccccccCcccceeeeEecCCC-ceEEeccccceeee
Confidence 3566788888888 7889999986 7999999986432 23333332 235679999999999 99999999999999
Q ss_pred EECCCCeEEEee---cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380 310 MDAEKEVFDLVY---SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386 (536)
Q Consensus 310 wd~~~~~~~~~~---~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~ 386 (536)
||+.......-. ...-.+.+++.+||. ++.++++.||.|.|||+.+...++.|++|.+.+.||.++++| ..|.||
T Consensus 492 WDLAapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG-tklWTG 569 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG-TKLWTG 569 (705)
T ss_pred eeccCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC-ceeecC
Confidence 999876443222 223467889999998 899999999999999999999999999999999999999988 689999
Q ss_pred eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeE
Q 009380 387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFR 466 (536)
Q Consensus 387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 466 (536)
+.|.+|+.||+|.+. .+........|.++.++|++.++++|-.++.+.|......+....-.| .. .++.
T Consensus 570 GlDntvRcWDlregr-----qlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlh----eS--cVLS 638 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGR-----QLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLH----ES--CVLS 638 (705)
T ss_pred CCccceeehhhhhhh-----hhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeeccc----cc--EEEE
Confidence 999999999999863 233345678899999999999999999999999987755443332222 22 3445
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 467 AIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 467 ~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
+.|.+.|+++++.+.|+.+..|...-|..+.+.+. ...+.+|.+++ +..+|+||+.|.+..||.+
T Consensus 639 lKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~---ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 639 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISF---DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeecc---CceEEEecCCCcceEEEEE
Confidence 77999999999999999999999998877776653 45566677776 4589999999999999876
No 108
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1e-25 Score=202.14 Aligned_cols=279 Identities=16% Similarity=0.202 Sum_probs=215.9
Q ss_pred eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe
Q 009380 237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV 316 (536)
Q Consensus 237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~ 316 (536)
-.|+.|++ -|.+||+|..||.|.|||+.+ ......+.+|..+|++++|+++| .+|+|+|.|..|.+||+..|.
T Consensus 26 a~~~~Fs~--~G~~lAvGc~nG~vvI~D~~T----~~iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSR--WGDYLAVGCANGRVVIYDFDT----FRIARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEecc--CcceeeeeccCCcEEEEEccc----cchhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCC
Confidence 78999999 999999999999999999998 67778899999999999999999 999999999999999999999
Q ss_pred EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec--cC----CCeEEEEEecCCCCEEEEEeCCC
Q 009380 317 FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL--HE----ARINTIDFNPRNPNIMATSSTDG 390 (536)
Q Consensus 317 ~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h~----~~i~~i~~~p~~~~~l~s~s~dg 390 (536)
+...+....+|+.+.|+|...+.+++.-.+..-.+.++..+.. .+-. .. ..-.+..|.+.| +++++|...|
T Consensus 99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~Lp~d~d~dln~sas~~~fdr~g-~yIitGtsKG 175 (405)
T KOG1273|consen 99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVLPKDDDGDLNSSASHGVFDRRG-KYIITGTSKG 175 (405)
T ss_pred ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCce--eeccCCCccccccccccccccCCC-CEEEEecCcc
Confidence 8888889999999999998877777776665566666554322 2110 11 112234577866 7999999999
Q ss_pred cEEEEeCCCCCCCCCCcceeec-ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC-------c--ceEEeccCCCCc
Q 009380 391 TACIWDLRSMATDKPEPMKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE-------N--TSMIHHNNQTGR 460 (536)
Q Consensus 391 ~i~iwdl~~~~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~-------~--~~~~~~~~~~~~ 460 (536)
.+.++|..+.+ .+..... ....|.++.|+..|..|+.-+.|..|+.|++...- . .+.+...-....
T Consensus 176 kllv~~a~t~e----~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~ 251 (405)
T KOG1273|consen 176 KLLVYDAETLE----CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ 251 (405)
T ss_pred eEEEEecchhe----eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence 99999999864 2222222 24688999999999999999999999999986321 1 111110001111
Q ss_pred eeeeeEEEEcCCCCEEEEEcCC-CcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 461 WISSFRAIWGWDDSCVFIGNMT-RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 461 ~~~~~~~~~s~~g~~l~~gs~d-g~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
|- +++|+.+|.|+++|+.. ..++||....|.++..|.+..+... ..+.|||.. ..+++- ..|.|+||..
T Consensus 252 Wk---~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l-~DV~whp~r-p~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 252 WK---KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEEL-LDVNWHPVR-PIIASI-ASGVVYIWAV 321 (405)
T ss_pred hh---heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhhe-eecccccce-eeeeec-cCCceEEEEe
Confidence 21 37799999999888754 6799999999999999988665544 578999965 556655 7899999975
No 109
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-26 Score=228.56 Aligned_cols=287 Identities=19% Similarity=0.246 Sum_probs=220.2
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC---CCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL---GPISGIVTQQYCLSKIFTSCYDGLIRLM 310 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~~~~~~~~l~s~s~dg~I~vw 310 (536)
...+..|...+ +-..|+.++. ..+.||.+........+...+.... -.+..+.|+.-..++|+|++..|.|.+|
T Consensus 39 k~~~nAIs~nr--~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW 115 (839)
T KOG0269|consen 39 KAKANAISVNR--DINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW 115 (839)
T ss_pred ccccceEeecC--CcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence 34567777778 7777777775 4788888876443333433332221 2356778886556899999999999999
Q ss_pred ECCC---CeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380 311 DAEK---EVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386 (536)
Q Consensus 311 d~~~---~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~ 386 (536)
|+.. .+.. .+..|...+.+++|++..+++|++|+.||+|++||++..+...++.+....|..|.|+|..++.|+++
T Consensus 116 dlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~ 195 (839)
T KOG0269|consen 116 DLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI 195 (839)
T ss_pred ecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe
Confidence 9987 3333 33468999999999999999999999999999999999999999999999999999999888999999
Q ss_pred eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeE
Q 009380 387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFR 466 (536)
Q Consensus 387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 466 (536)
...|.+.+||+|... .....+..|.++|.++.|+|++.+|||||.|+.|+|||+.+.+....... .+...+. +
T Consensus 196 ~dsG~lqlWDlRqp~---r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI--nTiapv~--r 268 (839)
T KOG0269|consen 196 HDSGYLQLWDLRQPD---RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI--NTIAPVG--R 268 (839)
T ss_pred cCCceEEEeeccCch---hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--eecceee--e
Confidence 999999999999864 34455668999999999999999999999999999999986543332211 2233333 3
Q ss_pred EEEcCCCCE-EEEEcC--CCcEEEEcCCccccc-eeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEE
Q 009380 467 AIWGWDDSC-VFIGNM--TRTVEVISPAQRRSV-ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 532 (536)
Q Consensus 467 ~~~s~~g~~-l~~gs~--dg~I~v~d~~~~~~~-~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~i 532 (536)
+.|-|...+ |+++++ |-.|+|||+...-+- .++.. |...+ ..++|...+...|.+++.||.|..
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e-H~~~v-t~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE-HTDSV-TGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeeccccccceeeec-cCccc-cceeccCCCceeeEeecCccHHHH
Confidence 779998766 666654 567999999876544 44444 44444 457776666678999999998753
No 110
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.5e-25 Score=220.30 Aligned_cols=285 Identities=15% Similarity=0.180 Sum_probs=225.0
Q ss_pred EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC----------CCEEEEEECCCeE
Q 009380 238 TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC----------LSKIFTSCYDGLI 307 (536)
Q Consensus 238 ~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~----------~~~l~s~s~dg~I 307 (536)
.++.|.| ....|.+...|..++|||+.+... ......+.-|+..|+.+.-.|.+ +..|+||+.|++|
T Consensus 328 IA~~Fde--t~~klscVYndhSlYvWDvrD~~k-vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TI 404 (1080)
T KOG1408|consen 328 IACQFDE--TTDKLSCVYNDHSLYVWDVRDVNK-VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTI 404 (1080)
T ss_pred eEEEecC--CCceEEEEEcCceEEEEecccccc-ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcE
Confidence 4677888 778899999999999999997543 33455666799999988876621 2469999999999
Q ss_pred EEEECCCCe---E-----------------------------------EEeecCCCceeEEEecCCCCCEEEEEECCCeE
Q 009380 308 RLMDAEKEV---F-----------------------------------DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGL 349 (536)
Q Consensus 308 ~vwd~~~~~---~-----------------------------------~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i 349 (536)
++||+..+. . ...+.....+.+++.+|++ .+|++|..-|+|
T Consensus 405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr~Gnl 483 (1080)
T KOG1408|consen 405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDRGGNL 483 (1080)
T ss_pred EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCccCce
Confidence 999997521 0 0011223468999999999 899999999999
Q ss_pred EEEECCCCccceeEeccCCCeEEEEEecC--CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc-------------
Q 009380 350 NIWDVRSRKSATEWLLHEARINTIDFNPR--NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK------------- 414 (536)
Q Consensus 350 ~i~d~~~~~~~~~~~~h~~~i~~i~~~p~--~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~------------- 414 (536)
++||+..-+....+..|...|.|+.|+.- +..+||+++.|+.|+|||+...- .....+.+|.
T Consensus 484 rVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny---~l~qtld~HSssITsvKFa~~gl 560 (1080)
T KOG1408|consen 484 RVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY---DLVQTLDGHSSSITSVKFACNGL 560 (1080)
T ss_pred EEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc---chhhhhcccccceeEEEEeecCC
Confidence 99999998888899999999999999842 23589999999999999986531 0111111222
Q ss_pred ------------------------------------CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC
Q 009380 415 ------------------------------------RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT 458 (536)
Q Consensus 415 ------------------------------------~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~ 458 (536)
..++.++..|+.+++++++.|..|+|||+.+++....|+.....
T Consensus 561 n~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~ 640 (1080)
T KOG1408|consen 561 NRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH 640 (1080)
T ss_pred ceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC
Confidence 34566677777789999999999999999999999998654333
Q ss_pred -CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 459 -GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 459 -~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
|.. +++...|.|.||++...|+++.+||..+++++++..+|..-+ +.+.|.+ |...|++.+.||.|.||.+
T Consensus 641 eG~l---IKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~V--TG~kF~n-DCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 641 EGDL---IKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAV--TGVKFLN-DCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred CCce---EEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchhe--eeeeecc-cchhheeecCCceEEEEEC
Confidence 433 347789999999999999999999999999999998865443 4678887 5699999999999999986
No 111
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=3.3e-26 Score=204.81 Aligned_cols=255 Identities=16% Similarity=0.246 Sum_probs=198.2
Q ss_pred CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-------------------CeEEEeecCCCceeEEEec
Q 009380 273 NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-------------------EVFDLVYSSEYAVFSLSQQ 333 (536)
Q Consensus 273 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-------------------~~~~~~~~~~~~i~~l~~~ 333 (536)
.....+..|.+++.+.+|++|| .++++|+.|.+|+|+|++. ..+..++.|..+|+++.|+
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred cceEEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 4455677899999999999999 9999999999999999872 1235667899999999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee
Q 009380 334 PNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL 411 (536)
Q Consensus 334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~ 411 (536)
|.. .+|++|+.|++|++||+......+.++ ....+|.+|.|+|.| .+|+.|....++++||+.+.++-. ......
T Consensus 182 Pre-~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfv-sanPd~ 258 (430)
T KOG0640|consen 182 PRE-TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFV-SANPDD 258 (430)
T ss_pred chh-heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEee-ecCccc
Confidence 998 899999999999999997654322222 356789999999977 699999999999999999865321 112334
Q ss_pred cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380 412 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA 491 (536)
Q Consensus 412 ~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~ 491 (536)
+|...|+++.+++.|++.+|++.||.|+|||--+.+++.++..... +..+.. +.|..+|+||++.++|..|++|.+.
T Consensus 259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~-gsevcS--a~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG-GSEVCS--AVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred ccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC-Cceeee--EEEccCCeEEeecCCcceeeeeeec
Confidence 7999999999999999999999999999999988899888864332 333333 7799999999999999999999999
Q ss_pred ccccceeccCCcee---eeeeeEeecCCCCCEEEEEc-cCCeEEEEec
Q 009380 492 QRRSVATLQSPYIS---AIPCRFHAHPHQVGTLAGAT-GGGQVYVWTS 535 (536)
Q Consensus 492 ~~~~~~~l~~~~~~---~~~~~~~~~p~~~~~lasgs-~Dg~v~iW~~ 535 (536)
+++.+..+.+.... .......|+-+. ++++.-. ..+.++-||.
T Consensus 336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtE-dyVl~pDEas~slcsWda 382 (430)
T KOG0640|consen 336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTE-DYVLFPDEASNSLCSWDA 382 (430)
T ss_pred CCceEEEEecCCcccchhhhhhhhhcCcc-ceEEccccccCceeeccc
Confidence 99999888764211 112223343322 4444432 3455666663
No 112
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=220.41 Aligned_cols=284 Identities=16% Similarity=0.229 Sum_probs=223.7
Q ss_pred ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEE
Q 009380 230 ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRL 309 (536)
Q Consensus 230 ~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~v 309 (536)
...|.+.-+.|+|.| +|.+|++++.||.|++|+..... .....+..|...|.+++... ++|++|+.+++|.+
T Consensus 9 Ryaht~G~t~i~~d~--~gefi~tcgsdg~ir~~~~~sd~---e~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 9 RYAHTGGLTLICYDP--DGEFICTCGSDGDIRKWKTNSDE---EEPETIDISGELVSSIACYS---NHFLTGSEQNTVLR 80 (933)
T ss_pred hhhccCceEEEEEcC--CCCEEEEecCCCceEEeecCCcc---cCCchhhccCceeEEEeecc---cceEEeeccceEEE
Confidence 457888999999999 99999999999999999987642 12222233778888887654 68999999999999
Q ss_pred EECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC
Q 009380 310 MDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST 388 (536)
Q Consensus 310 wd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~ 388 (536)
|.+..+... .+.....++.+++|+.+| ++++.|+.|-.|++.++.+......+.+|..+|.++.|+|.+ ++||+.+.
T Consensus 81 y~fps~~~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~-~fLAvss~ 158 (933)
T KOG1274|consen 81 YKFPSGEEDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG-NFLAVSSC 158 (933)
T ss_pred eeCCCCCccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC-CEEEEEec
Confidence 999988766 444567899999999998 899999999999999999999999999999999999999977 79999999
Q ss_pred CCcEEEEeCCCCCCCCCC--ccee--ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeee
Q 009380 389 DGTACIWDLRSMATDKPE--PMKV--LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISS 464 (536)
Q Consensus 389 dg~i~iwdl~~~~~~~~~--~~~~--~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 464 (536)
||.|+|||+.++...... +... ......+..++|+|+|..++..+.|+.|++|+..+++....+........ +.
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~-~~- 236 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK-FS- 236 (933)
T ss_pred CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccc-eE-
Confidence 999999999986421100 0011 11245678899999988899999999999999999999888865443332 33
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380 465 FRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533 (536)
Q Consensus 465 ~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW 533 (536)
.+.|+|+|.|||+++.||.|.|||+.+-+. |......|..+|.|+. +.+-.-..-|...+|
T Consensus 237 -~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~-n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 237 -DLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNA-NAITLITALGTLGVS 297 (933)
T ss_pred -EEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCC-CeeEEEeeccccccC
Confidence 378999999999999999999999998322 2222334678999954 555544444444433
No 113
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=7.4e-25 Score=219.49 Aligned_cols=327 Identities=16% Similarity=0.234 Sum_probs=249.7
Q ss_pred cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccC-CceEEEEEEecCCcc-EE
Q 009380 174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMP-GRITQMKFLPCSDVR-MV 251 (536)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~-~~I~~v~~~p~~~~~-~l 251 (536)
...+.+.++.+.|.++.-+|-=++++ -+-.+|.|.|+++..+.....-.|. ++|+++.|.. ||. .+
T Consensus 193 K~v~~f~~~~s~IT~ieqsPaLDVVa----------iG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrt--DG~p~l 260 (910)
T KOG1539|consen 193 KVVYTFQEFFSRITAIEQSPALDVVA----------IGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRT--DGNPLL 260 (910)
T ss_pred cEEEEecccccceeEeccCCcceEEE----------EeccCceEEEEEcccCcEEEEEEccccceeEEEecc--CCCeeE
Confidence 34567788889999999999888888 3568899999999888777666674 9999999998 774 66
Q ss_pred EEEeCCCcEEEEECCCCCCCCCceEEe-ccCCCCEEEEEEecCCCCEEEEEECCCeEEEE--------------------
Q 009380 252 VAGSKLGNITFWNLDSQQDEDNGIYLF-RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM-------------------- 310 (536)
Q Consensus 252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw-------------------- 310 (536)
++|+..|.+.+||++.. ..+... ..|.+.|..+.|.|.. ..+++++.|+.+++|
T Consensus 261 as~~~~G~m~~wDLe~k----kl~~v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~ 335 (910)
T KOG1539|consen 261 ASGRSNGDMAFWDLEKK----KLINVTRNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA 335 (910)
T ss_pred EeccCCceEEEEEcCCC----eeeeeeeccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchheeeccCCCC
Confidence 77888899999999862 222222 2444444444444443 444444444444444
Q ss_pred ---------------------------ECCCC-------e---------E------------------------------
Q 009380 311 ---------------------------DAEKE-------V---------F------------------------------ 317 (536)
Q Consensus 311 ---------------------------d~~~~-------~---------~------------------------------ 317 (536)
++... . .
T Consensus 336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence 32100 0 0
Q ss_pred --------------------EEeecC------CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE---eccCC
Q 009380 318 --------------------DLVYSS------EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW---LLHEA 368 (536)
Q Consensus 318 --------------------~~~~~~------~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---~~h~~ 368 (536)
...+.+ ...+++++.++-| |+.+.|...|.|-+|++.+|-....+ ..|..
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~ 494 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG 494 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeecccccCccccC
Confidence 001112 2457888899888 89999999999999999999888777 48999
Q ss_pred CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc
Q 009380 369 RINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN 448 (536)
Q Consensus 369 ~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~ 448 (536)
+|++++....+ +.+++++.+|.+++||..+. ...........+.++.++.....++++..|-.|+++|..+.+.
T Consensus 495 ~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k-----~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv 568 (910)
T KOG1539|consen 495 EVTGLAVDGTN-RLLVSAGADGILKFWDFKKK-----VLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV 568 (910)
T ss_pred ceeEEEecCCC-ceEEEccCcceEEEEecCCc-----ceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence 99999998876 68999999999999999874 3445556677889999999888999999999999999998887
Q ss_pred ceEEe-ccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccC
Q 009380 449 TSMIH-HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG 527 (536)
Q Consensus 449 ~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D 527 (536)
.+.+. |.+ .++. ..|||||++|+++++|++|++||+.++.++..+.- ...+..++++| ++++||+...|
T Consensus 569 vR~f~gh~n----ritd--~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v---d~~~~sls~SP-ngD~LAT~Hvd 638 (910)
T KOG1539|consen 569 VREFWGHGN----RITD--MTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV---DSPCTSLSFSP-NGDFLATVHVD 638 (910)
T ss_pred hHHhhcccc----ceee--eEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec---CCcceeeEECC-CCCEEEEEEec
Confidence 77774 333 3444 67999999999999999999999999988876643 34456899999 57999999988
Q ss_pred -CeEEEEe
Q 009380 528 -GQVYVWT 534 (536)
Q Consensus 528 -g~v~iW~ 534 (536)
.-|++|-
T Consensus 639 ~~gIylWs 646 (910)
T KOG1539|consen 639 QNGIYLWS 646 (910)
T ss_pred CceEEEEE
Confidence 6799994
No 114
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=3.3e-25 Score=215.90 Aligned_cols=293 Identities=16% Similarity=0.186 Sum_probs=215.9
Q ss_pred EEEEEEecC-CccEEEEEeCCCcEEEEECCCCCCC--CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380 238 TQMKFLPCS-DVRMVVAGSKLGNITFWNLDSQQDE--DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK 314 (536)
Q Consensus 238 ~~v~~~p~~-~~~~l~tg~~dg~v~iwd~~~~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~ 314 (536)
.+..|++.. ...+|+.+..||.|.++|....... ...+..+..|...|..+.|-| +...|++++.|.++++||+.+
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc
Confidence 456676542 3467889999999999998763221 233567788999999999999 558999999999999999998
Q ss_pred CeEE---EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc---------------------------cceeEe
Q 009380 315 EVFD---LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK---------------------------SATEWL 364 (536)
Q Consensus 315 ~~~~---~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~---------------------------~~~~~~ 364 (536)
..+. ..++|...|.++||.+.++..|++|+.||.|.|||++-.. .+....
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 7654 3578999999999999999999999999999999987432 011222
Q ss_pred ccCCCeEE---EEEecCCCCEEEEEeC-CCcEEEEeCCCCCCCC----CCcceeecc---cCceeEEEEccCCCeEEEEe
Q 009380 365 LHEARINT---IDFNPRNPNIMATSST-DGTACIWDLRSMATDK----PEPMKVLSH---KRAVHSAYFSPSGSSLATTS 433 (536)
Q Consensus 365 ~h~~~i~~---i~~~p~~~~~l~s~s~-dg~i~iwdl~~~~~~~----~~~~~~~~~---~~~v~~l~~sp~g~~l~t~s 433 (536)
.+...|.+ +.+..|. +.||+++. |+.|+|||+++..... .....+..| ...+.++..+..|.+|++.|
T Consensus 212 A~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC 290 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC 290 (720)
T ss_pred cccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence 34444555 5555555 68888887 9999999999864311 112222233 45678888888899999999
Q ss_pred CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccc-eeccCCceeeeeeeEe
Q 009380 434 FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSV-ATLQSPYISAIPCRFH 512 (536)
Q Consensus 434 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~-~~l~~~~~~~~~~~~~ 512 (536)
.|+.|++|++..........+.......+ ..+-..+|++.+|++|+.|...++|.+.+.+.- ..+.+|...+. .+.
T Consensus 291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf-~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt--~V~ 367 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISPVAEFSGKLNSSF-YVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVT--TVR 367 (720)
T ss_pred cCCcEEEEeccccCcCchhhccCccccee-eeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEE--EEe
Confidence 99999999998765433332222222111 123456899999999999999999999887653 34445544444 466
Q ss_pred ecCCCCCEEEEEccCCeEEEEec
Q 009380 513 AHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 513 ~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
|.|..-.-++++++|-.++||++
T Consensus 368 w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 368 WLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred eccccCCCceeeccCcceEEEec
Confidence 76665567888899999999987
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.1e-24 Score=195.58 Aligned_cols=272 Identities=15% Similarity=0.181 Sum_probs=214.9
Q ss_pred cccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEE
Q 009380 182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNIT 261 (536)
Q Consensus 182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~ 261 (536)
..+.|..+.|++....|.. .+.||.++||+.........-.|..++.+++|.+ ...+++|+.||.|+
T Consensus 12 P~d~IS~v~f~~~~~~LLv----------ssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d---~~~~~~G~~dg~vr 78 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLV----------SSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD---ESTIVTGGLDGQVR 78 (323)
T ss_pred ChhceeeEEEcCcCCcEEE----------EeccCcEEEEeccchhhhhheecCCceeeeeccC---CceEEEeccCceEE
Confidence 4578889999988877763 3689999999997776666677899999999996 35789999999999
Q ss_pred EEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEE
Q 009380 262 FWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLY 341 (536)
Q Consensus 262 iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~ 341 (536)
++|+.+ .....+..|..+|.||.+++-. +.+++||+|++|++||.+.......+.....|.++.... +.|+
T Consensus 79 ~~Dln~-----~~~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g---~~Lv 149 (323)
T KOG1036|consen 79 RYDLNT-----GNEDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSG---NRLV 149 (323)
T ss_pred EEEecC-----CcceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccccccCceEEEEeccC---CEEE
Confidence 999996 3455677899999999999877 899999999999999999866666666667898888763 6899
Q ss_pred EEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc-----
Q 009380 342 FGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK----- 414 (536)
Q Consensus 342 ~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~----- 414 (536)
+|+.+..|.+||+++.....+.. ...-.+.||++.|.+ .=+++++-||.|.+=.+............+..|.
T Consensus 150 Vg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~ 228 (323)
T KOG1036|consen 150 VGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKD 228 (323)
T ss_pred EeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCC
Confidence 99999999999999876533222 345678999999955 4577788899998866655322222333444443
Q ss_pred ----CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC
Q 009380 415 ----RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM 481 (536)
Q Consensus 415 ----~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~ 481 (536)
.+|++++|+|-...|+||+.||.|.+||+.+.+.+..+... ...+.. ++|+.+|..||+++.
T Consensus 229 ~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~---~~SI~s--lsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 229 TEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY---ETSISS--LSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC---CCceEE--EEeccCCCeEEEEec
Confidence 47999999998888999999999999999988877776432 112333 779999999999964
No 116
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=5.5e-25 Score=216.28 Aligned_cols=344 Identities=14% Similarity=0.137 Sum_probs=258.0
Q ss_pred cccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-------------------------
Q 009380 172 DENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP------------------------- 226 (536)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~------------------------- 226 (536)
.|+...-++||.|+|+.+.|...+..- +-..+++.|..|+||.+....
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~-------~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~ 252 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDD-------LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEE 252 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCc-------EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeee
Confidence 456667789999999999998877611 111256777788888763322
Q ss_pred -------cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCC---ceEEeccCCCCEEEEEEecCCCC
Q 009380 227 -------ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDN---GIYLFRTHLGPISGIVTQQYCLS 296 (536)
Q Consensus 227 -------~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~---~~~~~~~h~~~V~~l~~~~~~~~ 296 (536)
..+..+|.+.|+++.|+| ++..|++++.|.++.+|..++...... .+-...+..+......|+|++ +
T Consensus 253 i~~~is~eall~GHeDWV~sv~W~p--~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~ 329 (764)
T KOG1063|consen 253 IQYRISFEALLMGHEDWVYSVWWHP--EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-N 329 (764)
T ss_pred EEEEEehhhhhcCcccceEEEEEcc--chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC-C
Confidence 023458999999999999 999999999999999999886421111 122233445568899999998 9
Q ss_pred EEEEEECCCeEEEEECCCC-e---EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc----ceeEeccCC
Q 009380 297 KIFTSCYDGLIRLMDAEKE-V---FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS----ATEWLLHEA 368 (536)
Q Consensus 297 ~l~s~s~dg~I~vwd~~~~-~---~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~----~~~~~~h~~ 368 (536)
.+++-++-|..++|..... . ...+.+|-..|.+++|+|.| .+|++.+.|-+-++|-.-..+. +..-+-|..
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy 408 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY 408 (764)
T ss_pred EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCC-CEEEEeccccceeeecccccccceeeecccccccc
Confidence 9999999999999994332 2 22345788999999999999 7999999999999987542211 222346888
Q ss_pred CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC--------------------------------C---------------
Q 009380 369 RINTIDFNPRNPNIMATSSTDGTACIWDLRSM--------------------------------A--------------- 401 (536)
Q Consensus 369 ~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~--------------------------------~--------------- 401 (536)
.++|++|-+. ...|++|.....+++|+.... +
T Consensus 409 Dl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~ 487 (764)
T KOG1063|consen 409 DLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAV 487 (764)
T ss_pred cceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccce
Confidence 9999999984 478999999999999986531 0
Q ss_pred -------------------------CCCCCcceeecccCceeEEEEccCCCeEEEEeCCC-----cEEEEeCCCCCcceE
Q 009380 402 -------------------------TDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD-----TIGIWSGVNFENTSM 451 (536)
Q Consensus 402 -------------------------~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg-----~I~iwd~~~~~~~~~ 451 (536)
...+...++++|...|.+++.+|+|+++++++... .|++|+..+......
T Consensus 488 ~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~ 567 (764)
T KOG1063|consen 488 CAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQE 567 (764)
T ss_pred eeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhe
Confidence 00112335678999999999999999999998654 499999988877765
Q ss_pred EeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc----ceeccCCceeeeeeeEeecCCCCCEEEEEccC
Q 009380 452 IHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS----VATLQSPYISAIPCRFHAHPHQVGTLAGATGG 527 (536)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~----~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D 527 (536)
+. ++.+++.++.|||||++|++.+.|+++.+|....... ...++. |..++ ...+|+| ++.+++|+|.|
T Consensus 568 L~-----~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~-HtRII-WdcsW~p-de~~FaTaSRD 639 (764)
T KOG1063|consen 568 LE-----GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKA-HTRII-WDCSWSP-DEKYFATASRD 639 (764)
T ss_pred ec-----ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccc-cceEE-EEcccCc-ccceeEEecCC
Confidence 53 2345777799999999999999999999998855422 222333 33333 6778999 56889999999
Q ss_pred CeEEEEec
Q 009380 528 GQVYVWTS 535 (536)
Q Consensus 528 g~v~iW~~ 535 (536)
.+|.||..
T Consensus 640 K~VkVW~~ 647 (764)
T KOG1063|consen 640 KKVKVWEE 647 (764)
T ss_pred ceEEEEec
Confidence 99999975
No 117
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.1e-24 Score=182.75 Aligned_cols=286 Identities=16% Similarity=0.212 Sum_probs=215.5
Q ss_pred ccccceeeeecCCCCcccccccccccccccccccceEEec------cc------ccCc-c---ccccccCCceEEEEEEe
Q 009380 181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIG------SL------TLKP-E---NIARIMPGRITQMKFLP 244 (536)
Q Consensus 181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw------~~------~~~~-~---~~~~~~~~~I~~v~~~p 244 (536)
.+...|.++.|.|.|.+.+...+ ..++++- ++ ...| . ...+-|.+.|+|++|+|
T Consensus 30 ~dsqairav~fhp~g~lyavgsn----------skt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSN----------SKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred cchhheeeEEecCCCceEEeccC----------CceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 35678999999999999985422 2222222 11 1112 1 12256799999999999
Q ss_pred cCCccEEEEEeCCCcEEEEECCCCCC-CCCceEEeccCCCCEEEEEEecC---CCCEEEEEE-CCCeEEEEECCCCe-EE
Q 009380 245 CSDVRMVVAGSKLGNITFWNLDSQQD-EDNGIYLFRTHLGPISGIVTQQY---CLSKIFTSC-YDGLIRLMDAEKEV-FD 318 (536)
Q Consensus 245 ~~~~~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~---~~~~l~s~s-~dg~I~vwd~~~~~-~~ 318 (536)
+|.+|++|+.|.+|++........ ....-..|.-|.+.|..++|..+ ++.+|++++ .|..|++-|..+++ +.
T Consensus 100 --~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 100 --CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred --ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce
Confidence 999999999999999977654221 01233567789999999999754 335677765 36778888887765 45
Q ss_pred EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec--c-----CCCeEEEEEecCCCCEEEEEeCCCc
Q 009380 319 LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL--H-----EARINTIDFNPRNPNIMATSSTDGT 391 (536)
Q Consensus 319 ~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h-----~~~i~~i~~~p~~~~~l~s~s~dg~ 391 (536)
.+.+|.+-|.++--- ++ .++++|+.|.+|++||++-..++.++.. | ...|.+++..|.| .+|++|-.|..
T Consensus 178 a~sghtghilalysw-n~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~dss 254 (350)
T KOG0641|consen 178 ALSGHTGHILALYSW-NG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHADSS 254 (350)
T ss_pred eecCCcccEEEEEEe-cC-cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCCCc
Confidence 566788888887432 23 6899999999999999999888877641 2 3579999999987 79999999999
Q ss_pred EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC---CcceEE--eccCCCCceeeeeE
Q 009380 392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF---ENTSMI--HHNNQTGRWISSFR 466 (536)
Q Consensus 392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~---~~~~~~--~~~~~~~~~~~~~~ 466 (536)
..+||+|.+. .+..+..|...|.++.|+|...|+++|++|..|++-|+... +....+ .|.. ..+.
T Consensus 255 c~lydirg~r----~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkd------k~i~ 324 (350)
T KOG0641|consen 255 CMLYDIRGGR----MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD------KAIQ 324 (350)
T ss_pred eEEEEeeCCc----eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccC------ceEE
Confidence 9999999864 56677799999999999999999999999999999998632 111111 1221 2344
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380 467 AIWGWDDSCVFIGNMTRTVEVISPA 491 (536)
Q Consensus 467 ~~~s~~g~~l~~gs~dg~I~v~d~~ 491 (536)
+.|+|..-.+++.+.|.++.+|-+.
T Consensus 325 ~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 325 CRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEecCccceeeeccCcceEEEeccC
Confidence 7899998889999999999999764
No 118
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=8.5e-25 Score=215.07 Aligned_cols=280 Identities=18% Similarity=0.192 Sum_probs=221.2
Q ss_pred cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEE-EEEecCCCCEEEEEECCC
Q 009380 227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISG-IVTQQYCLSKIFTSCYDG 305 (536)
Q Consensus 227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~l~s~s~dg 305 (536)
...+.+|...|..+++.+ +..+++++.||++++|+-...+ ....+.+.+|.+.|.+ +++.+.....|++|+.|.
T Consensus 7 s~~l~gH~~DVr~v~~~~---~~~i~s~sRd~t~~vw~~~~~~--~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTD---GVCIISGSRDGTVKVWAKKGKQ--YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred EEEeccCccchheeEecC---CeEEeecCCCCceeeeeccCcc--cccceecccCcceeeccceeccccCcceEeecccc
Confidence 345688999998888775 4589999999999999986532 4455678888888887 888864325699999999
Q ss_pred eEEEEECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEE
Q 009380 306 LIRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMA 384 (536)
Q Consensus 306 ~I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~ 384 (536)
+|.+|.+.+.... .+.+|...|.+++...++ .+++|++|.++++|-+ +++...+.+|+..|.++...|.+ .++
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~--~~v 155 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN--TYV 155 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcC--ceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC--cEE
Confidence 9999999887654 556899999999988776 4999999999999964 66777899999999999999965 799
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeee
Q 009380 385 TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISS 464 (536)
Q Consensus 385 s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 464 (536)
|||.|.+|++|.-.+ ....+.+|..-|..+++-+++. |++++.||.|++|++ +++.+.... .+...+.+
T Consensus 156 TgsaDKtIklWk~~~------~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~---ghtn~vYs 224 (745)
T KOG0301|consen 156 TGSADKTIKLWKGGT------LLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMH---GHTNFVYS 224 (745)
T ss_pred eccCcceeeeccCCc------hhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeee---ccceEEEE
Confidence 999999999998644 5566779999999999998754 889999999999999 555555442 11223333
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 465 FRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 465 ~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
+....++..+++++.|++++||+.. ++.+.+.-+..+.+ ++.+-+ + .-+++|++||.|+||..+
T Consensus 225 --is~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiW--sa~~L~-N-gDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 225 --ISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIW--SAKVLL-N-GDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred --EEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceE--EEEEee-C-CCEEEeccCceEEEEEec
Confidence 4456677899999999999999987 56666655444444 334433 2 468899999999999753
No 119
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.9e-24 Score=193.10 Aligned_cols=273 Identities=12% Similarity=0.095 Sum_probs=212.6
Q ss_pred cccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc---ccccccCCceEEEEEEecCCccEEEEEeC
Q 009380 180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE---NIARIMPGRITQMKFLPCSDVRMVVAGSK 256 (536)
Q Consensus 180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~---~~~~~~~~~I~~v~~~p~~~~~~l~tg~~ 256 (536)
....|.|.++.|||....+.. .++.||+|++|++..... .....|.++|.+++|+. ||..+++|+.
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~---------A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd--dgskVf~g~~ 92 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLA---------AGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD--DGSKVFSGGC 92 (347)
T ss_pred CCcccchheeEeccccCceEE---------ecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc--CCceEEeecc
Confidence 345688999999995554442 258999999999865322 34467899999999999 9999999999
Q ss_pred CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC-CEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCC
Q 009380 257 LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL-SKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPN 335 (536)
Q Consensus 257 dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~ 335 (536)
|+.+++||+.+ ..+..+..|.++|.++.|-+... ..|+|||.|++|+.||.+...........+.+.++..-.
T Consensus 93 Dk~~k~wDL~S-----~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~- 166 (347)
T KOG0647|consen 93 DKQAKLWDLAS-----GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY- 166 (347)
T ss_pred CCceEEEEccC-----CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC-
Confidence 99999999997 36778889999999999988651 379999999999999999988887777788888888754
Q ss_pred CCCEEEEEECCCeEEEEECCCCcccee-Ee-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc
Q 009380 336 NVNTLYFGEGQGGLNIWDVRSRKSATE-WL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSH 413 (536)
Q Consensus 336 ~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~ 413 (536)
.++++++.+..|.+|+++.+..... .. ...-.+.||+..++.. -.+.|+-+|.+.|..+..+.. ..-..+..|
T Consensus 167 --pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~~~--~~nFtFkCH 241 (347)
T KOG0647|consen 167 --PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQYIDDPNP--KDNFTFKCH 241 (347)
T ss_pred --ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeeecceEEEEecCCCCc--cCceeEEEe
Confidence 4789999999999999987643221 11 2345689999999874 568999999999999887542 223334444
Q ss_pred c---------CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE
Q 009380 414 K---------RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG 479 (536)
Q Consensus 414 ~---------~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g 479 (536)
+ ..|++|+|+|....|+|++.||+..+||-.....+....... ..+++ +.|+.+|.+++-+
T Consensus 242 R~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~---qpItc--c~fn~~G~ifaYA 311 (347)
T KOG0647|consen 242 RSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP---QPITC--CSFNRNGSIFAYA 311 (347)
T ss_pred ccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC---Cccce--eEecCCCCEEEEE
Confidence 4 368899999988889999999999999987666655543222 23333 7789898887654
No 120
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=1.1e-24 Score=204.82 Aligned_cols=415 Identities=13% Similarity=0.109 Sum_probs=273.5
Q ss_pred ccCCHHHHHHHHhHHHHHHHHHhcCccccccccccccccCcccccccCCCCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 009380 4 EKLTEYERKRLENIKRNEEMLAALKVHAKASDLSAASKRQRVEIKAYKVSPQKKSKPETPIVLRRSLRTQGMQPDSKGLS 83 (536)
Q Consensus 4 ~~~~~~e~~r~~~i~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rrs~r~~~~~~~~~~~~ 83 (536)
+++..|+|+|..++.++..+..++.+. |++|.++..+-.. ++-- .. .=+..|.+-|+|..-..+--
T Consensus 63 sg~~P~~r~~~kk~s~~~~~~~s~~~~--~~rll~~~~~~~~--~~~~---i~---~l~~K~~~~s~~~~~~~~~~---- 128 (498)
T KOG4328|consen 63 SGMAPKKRKRTKKGSEIADFKGSPQSS--AARLLESRSPLPL--EPNF---ID---LLKAKPSGGSLRCDSTCLWK---- 128 (498)
T ss_pred cCCCCcchhhhcccchhhcccCCcccc--hhhhhhhcCCCCc--chhh---hh---hcccCCCccceeecccccee----
Confidence 568899999999999999999999884 7777552110000 0000 00 01123556666665332110
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCcccccccccCCchhhHHHHHHHhccCCCCCcchhhhccccccccccccccceeee
Q 009380 84 DHSVASDPKTSKSVSPKKSSAMTGPLSFKNAYVETGTFVSLVDVFLSVAKKPHFGEIKEEFNASLDYEMKPKVGVSVSVK 163 (536)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (536)
.+.+.+..+..+..+...++.++ +...|..+.+.-+. .-+ |+
T Consensus 129 -------------de~et~ll~~~~s~~~t~~~~~~----~f~~~~~~q~~i~~---~~~------------------~d 170 (498)
T KOG4328|consen 129 -------------DEDETPLLPPCRSIRNTKNQHKD----FFASWPSVQQGIPQ---SIK------------------FD 170 (498)
T ss_pred -------------ccCCCcccCCccccccccccccc----hhhcchhccCCCCc---ccc------------------cc
Confidence 01122333344555555554442 22444443321111 000 11
Q ss_pred ccCccccccccccceecccccceeeeecCCCCc-ccccccccccccccccccceEEecccccC-----ccccccccCCce
Q 009380 164 EDGVKACKDENLGFVIKDEFNGFKTCKDEGLGV-GSCDLIKGVVKTEKIEVGSCVDIGSLTLK-----PENIARIMPGRI 237 (536)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-----~~~~~~~~~~~I 237 (536)
-+. -+....+.++-+...|.++.|.|... .+.. .+...|.|-+||+..+ ...+...|.++|
T Consensus 171 l~l----~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva---------~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~V 237 (498)
T KOG4328|consen 171 LDL----DDYRILNVAKVTDRRITSLAFHPTENRKLVA---------VGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPV 237 (498)
T ss_pred ccc----ccceecceeEecccceEEEEecccCcceEEE---------EccCCCcEEEEecCCCCCccCceEEeccCCccc
Confidence 110 01233455677888999999999987 3332 4677789999998422 223456789999
Q ss_pred EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe-
Q 009380 238 TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV- 316 (536)
Q Consensus 238 ~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~- 316 (536)
.++.|+|. +...+++.+.||+|++-|+.... ...+.....-...+..+.|+... ..++.+..=|...+||++++.
T Consensus 238 s~l~F~P~-n~s~i~ssSyDGtiR~~D~~~~i--~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s 313 (498)
T KOG4328|consen 238 SGLKFSPA-NTSQIYSSSYDGTIRLQDFEGNI--SEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGS 313 (498)
T ss_pred cceEecCC-ChhheeeeccCceeeeeeecchh--hHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCc
Confidence 99999997 55788889999999999998643 34445554455667888998887 677777777799999998754
Q ss_pred -EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc----ceeEeccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380 317 -FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS----ATEWLLHEARINTIDFNPRNPNIMATSSTDGT 391 (536)
Q Consensus 317 -~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~----~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~ 391 (536)
...+.-|...|.+++++|..+.+|++++.|++++|||+|.-.. +.....|...|.+..|+|.+.. |+|.+.|..
T Consensus 314 ~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~ 392 (498)
T KOG4328|consen 314 EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNE 392 (498)
T ss_pred cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCc
Confidence 3445567789999999999999999999999999999986322 2223369999999999999976 889999999
Q ss_pred EEEEeCCCCCCCCCCcceeecccC------ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee
Q 009380 392 ACIWDLRSMATDKPEPMKVLSHKR------AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF 465 (536)
Q Consensus 392 i~iwdl~~~~~~~~~~~~~~~~~~------~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 465 (536)
|+|||..-.... ..+.....|.. ......|.|+..+|++|-.-..|-|||-..++.+..+...... .+.++
T Consensus 393 IRv~dss~~sa~-~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~--tI~~v 469 (498)
T KOG4328|consen 393 IRVFDSSCISAK-DEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS--TIPSV 469 (498)
T ss_pred eEEeeccccccc-CCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc--ccccc
Confidence 999998522111 12333333332 2345789999999999999999999998777766655332221 12221
Q ss_pred EEEEcCCCCEEEEE-cCCCcEEEEcCCc
Q 009380 466 RAIWGWDDSCVFIG-NMTRTVEVISPAQ 492 (536)
Q Consensus 466 ~~~~s~~g~~l~~g-s~dg~I~v~d~~~ 492 (536)
..|+|-+..+++| +..|.|+||--..
T Consensus 470 -n~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 470 -NEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred -eeecccccceeccCCccceEEEEecCC
Confidence 5689988755554 5558888886443
No 121
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=219.05 Aligned_cols=280 Identities=16% Similarity=0.240 Sum_probs=217.5
Q ss_pred EEEEEecCCccEEEEEeCCCcEEEEECCCCCCC--CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe
Q 009380 239 QMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE--DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV 316 (536)
Q Consensus 239 ~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~ 316 (536)
.+..++. .+++|++|+.||.|++|++...... ...+..++.|...|+.+....++ +.|++||.|-+|++|+...+.
T Consensus 29 ~Lq~da~-~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAP-NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCC-CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCc
Confidence 4444442 6678999999999999999764321 23467889999999999999888 899999999999999998763
Q ss_pred ---EEEeecCCCceeEEEe-cCCCCCEEEEEECCCeEEEEECCCCc--cc--------eeEe-ccCCCeEEEEEecCCCC
Q 009380 317 ---FDLVYSSEYAVFSLSQ-QPNNVNTLYFGEGQGGLNIWDVRSRK--SA--------TEWL-LHEARINTIDFNPRNPN 381 (536)
Q Consensus 317 ---~~~~~~~~~~i~~l~~-~~~~~~~l~~g~~dg~i~i~d~~~~~--~~--------~~~~-~h~~~i~~i~~~p~~~~ 381 (536)
...+..|...|.|+++ .++. .++++|+.|+.|.+||+.++. .+ ..+. ++...|++++.++.+ .
T Consensus 107 ~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t 184 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-T 184 (735)
T ss_pred chhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-e
Confidence 3345578999999999 5554 899999999999999999772 22 2233 788899999999977 7
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCce
Q 009380 382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRW 461 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 461 (536)
+|++|+..+.|++||.++.+ ....+.+|...|..+..++||..+++++.||+|++||+...+++.++..+.. +
T Consensus 185 ~ivsGgtek~lr~wDprt~~----kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-~-- 257 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRTCK----KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-G-- 257 (735)
T ss_pred EEEecCcccceEEecccccc----ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC-c--
Confidence 99999999999999999964 7788889999999999999999999999999999999999999888754332 2
Q ss_pred eeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccc-eeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 462 ISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSV-ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 462 ~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~-~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
+.. ..-+|+=..+++|+.||.|..-|+.+.... ..++.. ..+ ..+..+-.+ +-+-+++.|+.|.-|..
T Consensus 258 VWa--L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d-aPv--~~l~~~~~~-~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 258 VWA--LQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED-APV--LKLHLHEHD-NSVWVTTTDSSIKRWKL 326 (735)
T ss_pred eEE--EeeCCCcceEEecCCCCcEEecccCCchhheEeecCC-Cch--hhhhhcccc-CCceeeeccccceecCC
Confidence 333 333577788999999999999999885322 222211 111 122333223 34467778888888865
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.4e-25 Score=193.15 Aligned_cols=254 Identities=16% Similarity=0.195 Sum_probs=206.6
Q ss_pred ceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc----cccccccCCceEEEEEEecCCccEEE
Q 009380 177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP----ENIARIMPGRITQMKFLPCSDVRMVV 252 (536)
Q Consensus 177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~----~~~~~~~~~~I~~v~~~p~~~~~~l~ 252 (536)
.+-..|.|-|+.++..-.|+.|+++ +.|+.|+++...... ...+.+|.++|+.++|....-|.+||
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATc----------sSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLA 74 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATC----------SSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILA 74 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeee----------cCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEee
Confidence 3456799999999999999999954 788888888874432 34568999999999997655889999
Q ss_pred EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC-CEEEEEECCCeEEEEECCCC----eEEEeecCCCce
Q 009380 253 AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL-SKIFTSCYDGLIRLMDAEKE----VFDLVYSSEYAV 327 (536)
Q Consensus 253 tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~~l~s~s~dg~I~vwd~~~~----~~~~~~~~~~~i 327 (536)
+++.||.|.||.-..+. ....+.+..|...|++++|.|... -.|++++.||.|.|++.+.. .......|.-.|
T Consensus 75 ScsYDgkVIiWke~~g~--w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 75 SCSYDGKVIIWKEENGR--WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV 152 (299)
T ss_pred EeecCceEEEEecCCCc--hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence 99999999999988753 567778889999999999999753 46888999999999998764 234456788999
Q ss_pred eEEEecCCC-------------CCEEEEEECCCeEEEEECCCCcc--ceeEeccCCCeEEEEEecCC---CCEEEEEeCC
Q 009380 328 FSLSQQPNN-------------VNTLYFGEGQGGLNIWDVRSRKS--ATEWLLHEARINTIDFNPRN---PNIMATSSTD 389 (536)
Q Consensus 328 ~~l~~~~~~-------------~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~i~~~p~~---~~~l~s~s~d 389 (536)
++++|.|.. ...|++|+.|..|+||+...+.- -.++.+|.+.|+.++|.|.. ..++|+++.|
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence 999999862 14599999999999999987643 45588999999999999964 3489999999
Q ss_pred CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeC
Q 009380 390 GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG 443 (536)
Q Consensus 390 g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~ 443 (536)
|+|.||-.+... ..-....+......+.+++||+.|+.|++++.|+.|.+|.-
T Consensus 233 g~viIwt~~~e~-e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 233 GTVIIWTKDEEY-EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred CcEEEEEecCcc-CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 999999877421 11122222346778999999999999999999999999964
No 123
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.8e-24 Score=192.30 Aligned_cols=247 Identities=15% Similarity=0.190 Sum_probs=195.5
Q ss_pred CccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC-CCEEEEEEC
Q 009380 225 KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC-LSKIFTSCY 303 (536)
Q Consensus 225 ~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~s~s~ 303 (536)
.|.-....|.+.|++++. ++.++|+|+.|-+|+|||+.. ...+..+..|.+.|+++.|.+.. .+.|++|+.
T Consensus 34 ~~lF~~~aH~~sitavAV----s~~~~aSGssDetI~IYDm~k----~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAV----SGPYVASGSSDETIHIYDMRK----RKQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred eccccccccccceeEEEe----cceeEeccCCCCcEEEEeccc----hhhhcceeccccceEEEEecCCcchhheeeecC
Confidence 344456789999999999 668999999999999999998 67788888999999999999875 138999999
Q ss_pred CCeEEEEECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCE
Q 009380 304 DGLIRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNI 382 (536)
Q Consensus 304 dg~I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~ 382 (536)
||.|.+|+...=.+. .+..|.+.|+.++.+|.+ .+.++.+.|+.+++||+-.|+.-..+.. ...-+.|.|+|.|. +
T Consensus 106 DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd-~ 182 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGD-H 182 (362)
T ss_pred CCcEEEEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCC-E
Confidence 999999999875443 455788899999999998 8888999999999999999987665552 22234499999885 5
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe-ccCCCCce
Q 009380 383 MATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH-HNNQTGRW 461 (536)
Q Consensus 383 l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~ 461 (536)
|+.++.+ .|-||.+.+. .++........+.++.|. ++.+|++|+.|+.|.+||..+..+...+. |.+.
T Consensus 183 F~v~~~~-~i~i~q~d~A-----~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~R---- 251 (362)
T KOG0294|consen 183 FVVSGRN-KIDIYQLDNA-----SVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENR---- 251 (362)
T ss_pred EEEEecc-EEEEEecccH-----hHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhh----
Confidence 6666554 5899998874 233333444667777776 56789999999999999999877777664 3332
Q ss_pred eeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 462 ISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 462 ~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
+..+...-.|++.||++++.||.|+|||+...
T Consensus 252 VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 252 VKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 33333334678899999999999999999765
No 124
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=4.9e-24 Score=209.61 Aligned_cols=342 Identities=12% Similarity=0.149 Sum_probs=253.1
Q ss_pred ccccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc----ccc----cccCCceEEEEE
Q 009380 171 KDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE----NIA----RIMPGRITQMKF 242 (536)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~----~~~----~~~~~~I~~v~~ 242 (536)
-+.++...+-||.|+|.++.+.|.+..|. +.++|.++.+|.-..... .+. .+..+.-+...|
T Consensus 255 ~~is~eall~GHeDWV~sv~W~p~~~~LL----------SASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw 324 (764)
T KOG1063|consen 255 YRISFEALLMGHEDWVYSVWWHPEGLDLL----------SASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLW 324 (764)
T ss_pred EEEehhhhhcCcccceEEEEEccchhhhe----------ecccCcceEEEecCCccceEEEEEEeecccccccceeeEEE
Confidence 34566677889999999999999995554 457888889998543311 111 122456889999
Q ss_pred EecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe-----E
Q 009380 243 LPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV-----F 317 (536)
Q Consensus 243 ~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~-----~ 317 (536)
+| +++.+++-+..|..++|...+.. .........+|.+.|.+++|+|.| .+|+++|.|.+-|++-.-..+ +
T Consensus 325 ~~--n~~~ii~~g~~Gg~hlWkt~d~~-~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEi 400 (764)
T KOG1063|consen 325 SP--NSNVIIAHGRTGGFHLWKTKDKT-FWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEI 400 (764)
T ss_pred cC--CCCEEEEecccCcEEEEeccCcc-ceeeccccccccccceeeeecCCC-CEEEEeccccceeeecccccccceeee
Confidence 99 88999999999999999933211 134555678999999999999999 999999999999998765221 2
Q ss_pred EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC-----------------------------------------
Q 009380 318 DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS----------------------------------------- 356 (536)
Q Consensus 318 ~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~----------------------------------------- 356 (536)
....-|...++|++|-+.. ..+++|.....+++|+...
T Consensus 401 aRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~ 479 (764)
T KOG1063|consen 401 ARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGET 479 (764)
T ss_pred cccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccc
Confidence 2233477889999998853 6788888888888887320
Q ss_pred --Cc---------------------------------cceeEeccCCCeEEEEEecCCCCEEEEEeCC-----CcEEEEe
Q 009380 357 --RK---------------------------------SATEWLLHEARINTIDFNPRNPNIMATSSTD-----GTACIWD 396 (536)
Q Consensus 357 --~~---------------------------------~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-----g~i~iwd 396 (536)
|. .++.+.+|...|++++.+|++ +++|+++.. -.|++|+
T Consensus 480 ~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~ 558 (764)
T KOG1063|consen 480 NTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWN 558 (764)
T ss_pred ccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEe
Confidence 00 122234688899999999977 899999864 3589999
Q ss_pred CCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc-ceEEeccCCCCceeeeeEEEEcCCCCE
Q 009380 397 LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN-TSMIHHNNQTGRWISSFRAIWGWDDSC 475 (536)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~ 475 (536)
..+.. +...+..|.-.|+.++|||||++|++.|.|.++.+|....... ...+.....+.+.+. .+.|+|++.+
T Consensus 559 t~~W~----~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIW--dcsW~pde~~ 632 (764)
T KOG1063|consen 559 TANWL----QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIW--DCSWSPDEKY 632 (764)
T ss_pred ccchh----hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEE--EcccCcccce
Confidence 88753 4556779999999999999999999999999999998743321 122222334444444 4889999999
Q ss_pred EEEEcCCCcEEEEcCCcc--ccceeccC-CceeeeeeeEeecCCC----CCEEEEEccCCeEEEEec
Q 009380 476 VFIGNMTRTVEVISPAQR--RSVATLQS-PYISAIPCRFHAHPHQ----VGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 476 l~~gs~dg~I~v~d~~~~--~~~~~l~~-~~~~~~~~~~~~~p~~----~~~lasgs~Dg~v~iW~~ 535 (536)
|+++|.|.+|.||..... +.+..+.. .+...+ +.++++|.+ +..++.|-..|.|.||..
T Consensus 633 FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aV-TAv~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAV-TAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred eEEecCCceEEEEeccCchhhhhhhhchhccCCce-eeEEeeccccccccceEEEEecccEEEEEec
Confidence 999999999999998877 44444322 122233 456665543 348899999999999974
No 125
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.6e-24 Score=200.76 Aligned_cols=287 Identities=16% Similarity=0.231 Sum_probs=225.1
Q ss_pred cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM 310 (536)
Q Consensus 231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw 310 (536)
....+.|++|.||| ...+|++++.||+++||.++... ...+..+.-...+|.+.+|.|+|...+++++....++.|
T Consensus 210 ~ps~~~I~sv~FHp--~~plllvaG~d~~lrifqvDGk~--N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 210 HPSHGGITSVQFHP--TAPLLLVAGLDGTLRIFQVDGKV--NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSY 285 (514)
T ss_pred CcCcCCceEEEecC--CCceEEEecCCCcEEEEEecCcc--ChhheeeeeccCccceeeecCCCceEEEecccceEEEEe
Confidence 33468999999999 89999999999999999998643 456666666778999999999995599999999999999
Q ss_pred ECCCCeEEEee---cCC-CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380 311 DAEKEVFDLVY---SSE-YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386 (536)
Q Consensus 311 d~~~~~~~~~~---~~~-~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~ 386 (536)
|+.+.+...+. ++. ..+.....++++ ++|+..+..|.|.+....+++.+..++ -.+.|..++|+.++ ..|+++
T Consensus 286 Dle~ak~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSds-k~l~~~ 362 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDS-KELLAS 362 (514)
T ss_pred eccccccccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCC-cEEEEE
Confidence 99988765443 333 456778889998 799999999999999999999998887 57889999999988 566666
Q ss_pred eCCCcEEEEeCCCCCCCCCCcceeecccCce--eEEEEccCCCeEEEEeCCCcEEEEeCCC------CCcceEEeccCCC
Q 009380 387 STDGTACIWDLRSMATDKPEPMKVLSHKRAV--HSAYFSPSGSSLATTSFDDTIGIWSGVN------FENTSMIHHNNQT 458 (536)
Q Consensus 387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v--~~l~~sp~g~~l~t~s~dg~I~iwd~~~------~~~~~~~~~~~~~ 458 (536)
+.+|.|.+||++.. .++....-.+.| ++++.+++|.|||+|+..|.|.|||..+ .+++..+ ...
T Consensus 363 ~~~GeV~v~nl~~~-----~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~---dNL 434 (514)
T KOG2055|consen 363 GGTGEVYVWNLRQN-----SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV---DNL 434 (514)
T ss_pred cCCceEEEEecCCc-----ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh---hhh
Confidence 67899999999985 344444444444 5677778999999999999999999653 2222222 111
Q ss_pred CceeeeeEEEEcCCCCEEEEEcC--CCcEEEEcCCccccceeccCCcee-eeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 459 GRWISSFRAIWGWDDSCVFIGNM--TRTVEVISPAQRRSVATLQSPYIS-AIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 459 ~~~~~~~~~~~s~~g~~l~~gs~--dg~I~v~d~~~~~~~~~l~~~~~~-~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
...++ .+.|++++++|+++|. +..+++-.+.+......++..... ....+++|+| .+.+||.|..+|+|.+|.+
T Consensus 435 tt~It--sl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 435 TTAIT--SLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred heeee--eeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC-CCceEEeecCCCceeeEee
Confidence 22233 3779999999888875 467999998888777776643221 2235689999 4699999999999999986
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=4.5e-23 Score=201.22 Aligned_cols=270 Identities=14% Similarity=0.113 Sum_probs=195.2
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEE-EEEECCCeEEEEECCCCeEEEeecCCCce
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKI-FTSCYDGLIRLMDAEKEVFDLVYSSEYAV 327 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l-~s~s~dg~I~vwd~~~~~~~~~~~~~~~i 327 (536)
.++++++.|+.|.+||+.+ ...+..+..|.. +.+++|+|++ ..+ ++++.++.|++||+.++...........+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t----~~~~~~~~~~~~-~~~l~~~~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 75 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTAT----LEVTRTFPVGQR-PRGITLSKDG-KLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP 75 (300)
T ss_pred cEEEEecCCCEEEEEECCC----CceEEEEECCCC-CCceEECCCC-CEEEEEECCCCeEEEEECCCCcEEEeccCCCCc
Confidence 5788999999999999987 566777766544 6789999998 665 66778999999999988766544444456
Q ss_pred eEEEecCCCCCEEEE-EECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC-cEEEEeCCCCCCCCC
Q 009380 328 FSLSQQPNNVNTLYF-GEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG-TACIWDLRSMATDKP 405 (536)
Q Consensus 328 ~~l~~~~~~~~~l~~-g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg-~i~iwdl~~~~~~~~ 405 (536)
..++|+|++ +.+++ +..++.|.+||+.+.+.+..+. +...+.+++|+|++ .++++++.++ .+.+||..++.
T Consensus 76 ~~~~~~~~g-~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~---- 148 (300)
T TIGR03866 76 ELFALHPNG-KILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYE---- 148 (300)
T ss_pred cEEEECCCC-CEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCe----
Confidence 788999998 55554 4568999999999887776665 33456889999988 6777777664 56788987642
Q ss_pred CcceeecccCceeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCcceEEeccCC--CCceeeeeEEEEcCCCCEEEEE-cC
Q 009380 406 EPMKVLSHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFENTSMIHHNNQ--TGRWISSFRAIWGWDDSCVFIG-NM 481 (536)
Q Consensus 406 ~~~~~~~~~~~v~~l~~sp~g~~l~t~-s~dg~I~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~g~~l~~g-s~ 481 (536)
..........+.+++|+|+|++|+++ ..++.|++||+.+++....+..... .........+.|+|++++++++ ..
T Consensus 149 -~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 149 -IVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP 227 (300)
T ss_pred -EEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC
Confidence 22222233456789999999988655 4689999999998876665542211 1111223346789999986554 45
Q ss_pred CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEE-ccCCeEEEEecC
Q 009380 482 TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA-TGGGQVYVWTSD 536 (536)
Q Consensus 482 dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasg-s~Dg~v~iW~~d 536 (536)
++.|.+||..+++.+..+..++ ....++|+| ++.+|+++ +.+|.|.|||++
T Consensus 228 ~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 228 ANRVAVVDAKTYEVLDYLLVGQ---RVWQLAFTP-DEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred CCeEEEEECCCCcEEEEEEeCC---CcceEEECC-CCCEEEEEcCCCCeEEEEECC
Confidence 6789999999887766553222 234678999 56788776 569999999974
No 127
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.6e-24 Score=200.68 Aligned_cols=256 Identities=17% Similarity=0.234 Sum_probs=203.6
Q ss_pred CCceEEEEEEec-----CCccEEEEEeCCCcEEEEECCCCCCC-----------------CCceEEeccCCCCEEEEEEe
Q 009380 234 PGRITQMKFLPC-----SDVRMVVAGSKLGNITFWNLDSQQDE-----------------DNGIYLFRTHLGPISGIVTQ 291 (536)
Q Consensus 234 ~~~I~~v~~~p~-----~~~~~l~tg~~dg~v~iwd~~~~~~~-----------------~~~~~~~~~h~~~V~~l~~~ 291 (536)
+.--.|++|... ..|+|+|.|+.|..|.|||++-.... ++.-..-.+|+..|..+.|+
T Consensus 173 pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n 252 (463)
T KOG0270|consen 173 PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN 252 (463)
T ss_pred cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence 344467777642 34689999999999999999742110 11111234799999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEeec-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccc-eeEeccCCC
Q 009380 292 QYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA-TEWLLHEAR 369 (536)
Q Consensus 292 ~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~-~~~~~h~~~ 369 (536)
..-.+.|++||.|.+|.+||+.++++...+. |...|.++.|+|..+.+|++|+.|++|.++|.|..... ..|+ ..+.
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~ 331 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGE 331 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccc
Confidence 8877899999999999999999999988776 78899999999999999999999999999999964443 3343 6788
Q ss_pred eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCc
Q 009380 370 INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFEN 448 (536)
Q Consensus 370 i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~ 448 (536)
|-.++|.|..++.++++..||+|+-+|+|+.. ..+.....|..+|.++++++ ...+++|++.|+.|++|++..-.+
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~---~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG---KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCCC---CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 99999999999999999999999999999863 35667779999999999998 456789999999999999987666
Q ss_pred ceEEeccCCCCceeeeeEEEEcCCCC-EEEEEcCCCcEEEEcCCccccc
Q 009380 449 TSMIHHNNQTGRWISSFRAIWGWDDS-CVFIGNMTRTVEVISPAQRRSV 496 (536)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs~dg~I~v~d~~~~~~~ 496 (536)
.....|....++ +. ++++.|+-. .++.|+..+.++|||+.+...+
T Consensus 409 ~~v~~~~~~~~r-l~--c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 409 KSVKEHSFKLGR-LH--CFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccccccccc-ee--ecccCCCcceEEEecCccceEEEeecccChhH
Confidence 555555444444 22 244556544 4778888888999999877554
No 128
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=3.1e-24 Score=197.10 Aligned_cols=259 Identities=18% Similarity=0.270 Sum_probs=200.6
Q ss_pred ccccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccc-----------------cCcccccccc
Q 009380 171 KDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLT-----------------LKPENIARIM 233 (536)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~-----------------~~~~~~~~~~ 233 (536)
+..++....-+|..++.-+..++.++-.... +-+..|.|.+|++. ..|.....+|
T Consensus 139 ~~P~~~~~~i~h~g~~NRvr~~~~~~~~~~a--------swse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~gh 210 (440)
T KOG0302|consen 139 RKPQIEMKSIPHYGGINRVRVSRLGNEVLCA--------SWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGH 210 (440)
T ss_pred ccccccccccccccccceeeecccCCcceee--------eecccCcEEEEEchhhhhhhcCccccccccccCceEEeccc
Confidence 3466777778888888888888776333222 23566788889862 2333445677
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
.+.=+.++|||...| .|++|.--+.|++|...++.. ..-...|.+|+..|-.|+|+|.....|++||-||+|+|||++
T Consensus 211 k~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W-~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiR 288 (440)
T KOG0302|consen 211 KGEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSW-KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIR 288 (440)
T ss_pred Cccceeeeccccccc-ccccCccccceEeeeeccCce-eecCccccccccchhhhccCCccCceEEeeecCceEEEEEec
Confidence 888899999996444 588898889999999987432 223345667999999999999987999999999999999999
Q ss_pred CC---eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC---CccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380 314 KE---VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS---RKSATEWLLHEARINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 314 ~~---~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~---~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s 387 (536)
.+ .+.....|.+.|+.|.|+..-+ +|++|+.||+++|||+|+ ++++.+|+-|..+|++|.|+|.....|++++
T Consensus 289 s~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg 367 (440)
T KOG0302|consen 289 SGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG 367 (440)
T ss_pred CCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc
Confidence 87 4556678999999999999884 999999999999999996 4668899999999999999998888999999
Q ss_pred CCCcEEEEeCCCCCC--------------CCCCcceeecccCceeEEEEccC-CCeEEEEeCCCcEEEE
Q 009380 388 TDGTACIWDLRSMAT--------------DKPEPMKVLSHKRAVHSAYFSPS-GSSLATTSFDDTIGIW 441 (536)
Q Consensus 388 ~dg~i~iwdl~~~~~--------------~~~~~~~~~~~~~~v~~l~~sp~-g~~l~t~s~dg~I~iw 441 (536)
.|.+|.|||+..... ..++++-+..-...+..+.|++. ..+|++.+.|| +.||
T Consensus 368 ~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 368 EDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 999999999875321 11112222223567888999983 35788888888 5555
No 129
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=7e-23 Score=194.58 Aligned_cols=325 Identities=14% Similarity=0.128 Sum_probs=235.6
Q ss_pred cceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCCccEEEEEeCCCcEEE
Q 009380 184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITF 262 (536)
Q Consensus 184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~i 262 (536)
.-|.|+.|.++|+.+. +..+|.|.+|+..... ....+.|++.|.+++... +|.+|- |++|..|..
T Consensus 247 k~Vl~v~F~engdviT-----------gDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr--~GtllS-GgKDRki~~ 312 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVIT-----------GDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR--DGTLLS-GGKDRKIIL 312 (626)
T ss_pred eEEEEEEEcCCCCEEe-----------ecCCceEEEEeCCCceEEeEeeecCCceEEEEEec--CccEee-cCccceEEe
Confidence 5688889999998665 5677899999863322 122248999999999998 887665 999999999
Q ss_pred EECCCCCC------------------------------------CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 263 WNLDSQQD------------------------------------EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 263 wd~~~~~~------------------------------------~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
||-.-... +.......++|....+.++.+|+. ++++||+.|+.
T Consensus 313 Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~ 391 (626)
T KOG2106|consen 313 WDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKH 391 (626)
T ss_pred ccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcce
Confidence 99431100 011112346788999999999998 99999999999
Q ss_pred EEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380 307 IRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386 (536)
Q Consensus 307 I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~ 386 (536)
+++|+ ..++........++.|+.|+|.+ .+++|+..|...+.|.++...+..-.. ..++++|.|+|+| .+||.|
T Consensus 392 v~lW~--~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G-~~lAvg 465 (626)
T KOG2106|consen 392 VRLWN--DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDG-AFLAVG 465 (626)
T ss_pred EEEcc--CCceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCC-CEEEEe
Confidence 99999 45555555567899999999997 899999999999999999665554444 8999999999988 799999
Q ss_pred eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc-----------
Q 009380 387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN----------- 455 (536)
Q Consensus 387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~----------- 455 (536)
+.|+.|+||-+....... ...-..+..+|+.+.|++|+++|.+-+.|-.|-.|....-......+..
T Consensus 466 s~d~~iyiy~Vs~~g~~y--~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF 543 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGRKY--SRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGF 543 (626)
T ss_pred cCCCeEEEEEECCCCcEE--EEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEE
Confidence 999999999988754211 1111235589999999999999999999999999954322222211100
Q ss_pred ----CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc---ceeccCCceeeeeeeEeecCCCCCEEEEEccCC
Q 009380 456 ----NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS---VATLQSPYISAIPCRFHAHPHQVGTLAGATGGG 528 (536)
Q Consensus 456 ----~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~---~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg 528 (536)
...+..+.. ++-+.+.+++++|...|.|++|...-.+. ...+.+| .+.+ ..++|.-.+ ..|++.+.|.
T Consensus 544 ~v~g~s~~t~i~a--~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~gh-s~~v-t~V~Fl~~d-~~li~tg~D~ 618 (626)
T KOG2106|consen 544 EVFGGSDGTDINA--VARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGH-SSHV-TNVAFLCKD-SHLISTGKDT 618 (626)
T ss_pred EEecccCCchHHH--hhhhhhhhhhhccccCceEEEEccccCCCcccceeeccc-ccee-EEEEEeeCC-ceEEecCCCc
Confidence 011111111 23355778899999999999998754433 3334443 3333 345554434 6777777999
Q ss_pred eEEEEecC
Q 009380 529 QVYVWTSD 536 (536)
Q Consensus 529 ~v~iW~~d 536 (536)
.|..|++.
T Consensus 619 Si~qW~lv 626 (626)
T KOG2106|consen 619 SIMQWRLV 626 (626)
T ss_pred eEEEEEeC
Confidence 99999873
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2e-23 Score=211.57 Aligned_cols=248 Identities=19% Similarity=0.198 Sum_probs=207.9
Q ss_pred ccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC--eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC
Q 009380 279 RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE--VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS 356 (536)
Q Consensus 279 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~--~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~ 356 (536)
..|+...+.|+|.|+| ..|++|+.||.|++|+.... .+..+..+...|.+++... +.|++|+.+++|.+|.+..
T Consensus 10 yaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---NHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc---cceEEeeccceEEEeeCCC
Confidence 3688889999999999 89999999999999997654 2222333677788887754 5899999999999999998
Q ss_pred CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC
Q 009380 357 RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD 436 (536)
Q Consensus 357 ~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg 436 (536)
+..-..+....-++++++|+.+| .++|.||.|-.|++-++.... ....+.+|..+|.++.|+|++++||+.+.||
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s----~~~~lrgh~apVl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSS----QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred CCccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccc----hheeecccCCceeeeeEcCCCCEEEEEecCc
Confidence 87766666677899999999977 799999999999999998854 6677889999999999999999999999999
Q ss_pred cEEEEeCCCCCcceEEeccCCCCc---eeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEee
Q 009380 437 TIGIWSGVNFENTSMIHHNNQTGR---WISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 513 (536)
Q Consensus 437 ~I~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~ 513 (536)
.|+|||+.++....++........ .-.+.+++|+|+|..|++.+.|+.|.+|+..+++....+...+.....+.+.|
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW 240 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence 999999999887776642222111 11334588999988888888999999999999999999887666555678999
Q ss_pred cCCCCCEEEEEccCCeEEEEecC
Q 009380 514 HPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 514 ~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
+|+ |.|||+++.||.|.|||+|
T Consensus 241 sPn-G~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 241 SPN-GKYIAASTLDGQILVWNVD 262 (933)
T ss_pred cCC-CcEEeeeccCCcEEEEecc
Confidence 995 8999999999999999986
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=2.4e-24 Score=204.17 Aligned_cols=280 Identities=14% Similarity=0.204 Sum_probs=221.0
Q ss_pred ccccceeeeecCCCCcccccccccccccccccccceEEecccccCcccc----ccc--cCCceEEEEEEecCCccEEEEE
Q 009380 181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENI----ARI--MPGRITQMKFLPCSDVRMVVAG 254 (536)
Q Consensus 181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~----~~~--~~~~I~~v~~~p~~~~~~l~tg 254 (536)
.|-.-|.++.+|..-+.+- +++ .|+|++||+....... +.. -.+-|.++..+| ||+.|++|
T Consensus 417 ~HGEvVcAvtIS~~trhVy----------TgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p--dgrtLivG 483 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVY----------TGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP--DGRTLIVG 483 (705)
T ss_pred ccCcEEEEEEecCCcceeE----------ecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecC--CCceEEec
Confidence 3555666666666666555 333 4799999985432221 111 256789999999 99999999
Q ss_pred eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE-EeecCCCceeEEEec
Q 009380 255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFSLSQQ 333 (536)
Q Consensus 255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~l~~~ 333 (536)
+.-.+|.|||+.... ......+....-...+++.+||. +..++|..||.|.|||+.+.... .+.+|...+.||..+
T Consensus 484 GeastlsiWDLAapT--prikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 484 GEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred cccceeeeeeccCCC--cchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence 999999999998743 12222333334457789999998 99999999999999999988665 455799999999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc
Q 009380 334 PNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSH 413 (536)
Q Consensus 334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~ 413 (536)
++| ..|.+|+.|.+|+-||++.+..+.... ....|.++..+|.+ .+|+.|-.++.+-|...... ....+..|
T Consensus 561 ~dG-tklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~-dWlavGMens~vevlh~skp-----~kyqlhlh 632 (705)
T KOG0639|consen 561 KDG-TKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKP-----EKYQLHLH 632 (705)
T ss_pred CCC-ceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCc-cceeeecccCcEEEEecCCc-----cceeeccc
Confidence 999 899999999999999999988776654 56889999999977 79999999999888877653 45566679
Q ss_pred cCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380 414 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 414 ~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
..-|.++.|.+.|+++++.+.|+.+..|...-+..+....... .++++..|.|.+||++|+.|....||.+
T Consensus 633 eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~S------sVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 633 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS------SVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccC------cceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999999999999999999887666655443222 3344677889999999999988888864
No 132
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9.6e-24 Score=198.60 Aligned_cols=301 Identities=14% Similarity=0.158 Sum_probs=235.8
Q ss_pred ccccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccc-ccc--CCceEEEEEEecCC
Q 009380 171 KDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIA-RIM--PGRITQMKFLPCSD 247 (536)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~-~~~--~~~I~~v~~~p~~~ 247 (536)
+++..-++-..-..+|.+++|.|...++. ++++||.++||.++.+.+..+ ..| .-+|.+.+|+| +
T Consensus 201 krlkDaNa~~ps~~~I~sv~FHp~~plll----------vaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p--~ 268 (514)
T KOG2055|consen 201 KRLKDANAAHPSHGGITSVQFHPTAPLLL----------VAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP--N 268 (514)
T ss_pred EeecccccCCcCcCCceEEEecCCCceEE----------EecCCCcEEEEEecCccChhheeeeeccCccceeeecC--C
Confidence 34445555556668999999999999888 569999999999866544322 223 77999999999 8
Q ss_pred cc-EEEEEeCCCcEEEEECCCCCCCCCceEEeccCC-CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCC
Q 009380 248 VR-MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL-GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEY 325 (536)
Q Consensus 248 ~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~ 325 (536)
|. .+++++...-++.||+.+.. ...+....++. ..+.....++++ ++|+..+..|.|.+....++.++..+...+
T Consensus 269 G~~~i~~s~rrky~ysyDle~ak--~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~KieG 345 (514)
T KOG2055|consen 269 GHSVIFTSGRRKYLYSYDLETAK--VTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSFKIEG 345 (514)
T ss_pred CceEEEecccceEEEEeeccccc--cccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhheeeecc
Confidence 87 89999999999999998743 23334444444 356778889999 999999999999999999999998899999
Q ss_pred ceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCe--EEEEEecCCCCEEEEEeCCCcEEEEeCCCCC-C
Q 009380 326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARI--NTIDFNPRNPNIMATSSTDGTACIWDLRSMA-T 402 (536)
Q Consensus 326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i--~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~-~ 402 (536)
.|..++|+.++ ..|++.+.+|.|.+||++...+++.|.. .+.| +++|.++++ .+||+|+..|.|.|||..+.- .
T Consensus 346 ~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 346 VVSDFTFSSDS-KELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred EEeeEEEecCC-cEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCC-ceEEeccCcceEEEeccchhhcc
Confidence 99999999988 7888888899999999999999998873 3333 566777866 699999999999999976532 1
Q ss_pred CCCCcc-eeecccCceeEEEEccCCCeEEEEe--CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE
Q 009380 403 DKPEPM-KVLSHKRAVHSAYFSPSGSSLATTS--FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG 479 (536)
Q Consensus 403 ~~~~~~-~~~~~~~~v~~l~~sp~g~~l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g 479 (536)
..+.++ .+......|+++.|+|++++|+.+| .++.+++-.+.+......++..+..-..++ +++|||.+.+++.|
T Consensus 423 ~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vt--c~aFSP~sG~lAvG 500 (514)
T KOG2055|consen 423 TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVT--CMAFSPNSGYLAVG 500 (514)
T ss_pred CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceE--EEEecCCCceEEee
Confidence 123333 3335678999999999999988887 467799988876555555543333333344 47899999999999
Q ss_pred cCCCcEEEEcCC
Q 009380 480 NMTRTVEVISPA 491 (536)
Q Consensus 480 s~dg~I~v~d~~ 491 (536)
+.+|.|.+|.+.
T Consensus 501 Ne~grv~l~kL~ 512 (514)
T KOG2055|consen 501 NEAGRVHLFKLH 512 (514)
T ss_pred cCCCceeeEeec
Confidence 999999999763
No 133
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7.1e-25 Score=227.35 Aligned_cols=299 Identities=17% Similarity=0.255 Sum_probs=230.6
Q ss_pred eeeecCCCCc-ccccccccccccccccccceEEecccccCcccc------ccccCCceEEEEEEecCCcc--EEEEEeCC
Q 009380 187 KTCKDEGLGV-GSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENI------ARIMPGRITQMKFLPCSDVR--MVVAGSKL 257 (536)
Q Consensus 187 ~~~~~s~~~~-~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~------~~~~~~~I~~v~~~p~~~~~--~l~tg~~d 257 (536)
....++|++. +++..+..+.--.+-+.+..+.||.+.+..... ......+-+.++|.+..++. +||.|..|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence 3567888886 444332222222223556778888775432221 11236788999999943332 59999999
Q ss_pred CcEEEEECCCC--CCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee---cCCCceeEEEe
Q 009380 258 GNITFWNLDSQ--QDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY---SSEYAVFSLSQ 332 (536)
Q Consensus 258 g~v~iwd~~~~--~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~---~~~~~i~~l~~ 332 (536)
|.|.+||.... ......+..+..|.+.|..+.|++..+++|++|+.||.|.|||+.+-..-... ...+.|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999998762 22356677888999999999999998789999999999999999875433333 24578999999
Q ss_pred cCCCCCEEEEEECCCeEEEEECCCCccceeEeccCC--CeEEEEEecCCCCEEEEEeCC---CcEEEEeCCCCCCCCCCc
Q 009380 333 QPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA--RINTIDFNPRNPNIMATSSTD---GTACIWDLRSMATDKPEP 407 (536)
Q Consensus 333 ~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~--~i~~i~~~p~~~~~l~s~s~d---g~i~iwdl~~~~~~~~~~ 407 (536)
+..-.++|++++.+|.+.|||++..+.+-.+..|.. .+..+.|||++...+++++.| -.|.+||+|... .+
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as----sP 245 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS----SP 245 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC----Cc
Confidence 988778999999999999999999988877775554 478999999998888888876 469999999854 34
Q ss_pred cee-ecccCceeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC-EEEEEcCCCc
Q 009380 408 MKV-LSHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS-CVFIGNMTRT 484 (536)
Q Consensus 408 ~~~-~~~~~~v~~l~~sp~g-~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs~dg~ 484 (536)
..+ .+|...|.++.|++.+ .++++++.|+.|.+|+..+++.+..+.. .+.| ++.+.|.|... .+++++.||.
T Consensus 246 ~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~---~~nW--~fdv~w~pr~P~~~A~asfdgk 320 (1049)
T KOG0307|consen 246 LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA---QGNW--CFDVQWCPRNPSVMAAASFDGK 320 (1049)
T ss_pred hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC---CCcc--eeeeeecCCCcchhhhheeccc
Confidence 444 4899999999999955 8999999999999999999988887754 2333 45588999766 7888999999
Q ss_pred EEEEcCCccc
Q 009380 485 VEVISPAQRR 494 (536)
Q Consensus 485 I~v~d~~~~~ 494 (536)
|.||.+.+..
T Consensus 321 I~I~sl~~~~ 330 (1049)
T KOG0307|consen 321 ISIYSLQGTD 330 (1049)
T ss_pred eeeeeeecCC
Confidence 9999997664
No 134
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2e-24 Score=214.77 Aligned_cols=246 Identities=17% Similarity=0.270 Sum_probs=195.9
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE 315 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~ 315 (536)
.+..|.|+. .+.++|||++..|.|.+||+.... ..+.+..|..|...|++++|++..+++|++||.||+|++||++..
T Consensus 89 S~~DVkW~~-~~~NlIAT~s~nG~i~vWdlnk~~-rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 89 SAADVKWGQ-LYSNLIATCSTNGVISVWDLNKSI-RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred ehhhccccc-chhhhheeecCCCcEEEEecCccc-cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc
Confidence 466788884 378999999999999999998632 156677899999999999999999999999999999999999976
Q ss_pred eEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc-cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 009380 316 VFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWLLHEARINTIDFNPRNPNIMATSSTDGTAC 393 (536)
Q Consensus 316 ~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~ 393 (536)
.... .++....|..+.|+|..++.|+++...|.|++||+|... +...+..|.++|.|+.|+|++ .+||||+.|+.|+
T Consensus 167 ~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vk 245 (839)
T KOG0269|consen 167 KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVK 245 (839)
T ss_pred cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC-ceeeecCCCccEE
Confidence 5544 445667899999999988999999999999999999764 477888999999999999955 8999999999999
Q ss_pred EEeCCCCCCCCCCcceeecccCceeEEEEccCC-CeEEEEe--CCCcEEEEeCCCCC-cceEEe-ccCCCCceeeeeEEE
Q 009380 394 IWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSG-SSLATTS--FDDTIGIWSGVNFE-NTSMIH-HNNQTGRWISSFRAI 468 (536)
Q Consensus 394 iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~t~s--~dg~I~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~ 468 (536)
|||+.... ...........+|..+.|-|.. .+|++++ .|-.|+|||++..- +..++. |... ++. ++
T Consensus 246 iWd~t~~~---~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~----vt~--i~ 316 (839)
T KOG0269|consen 246 IWDMTDSR---AKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDS----VTG--IA 316 (839)
T ss_pred EEeccCCC---ccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcc----ccc--ee
Confidence 99998753 3445555677899999999965 4566666 36779999997643 333332 2221 222 55
Q ss_pred EcC-CCCEEEEEcCCCcEEEEcCCcc
Q 009380 469 WGW-DDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 469 ~s~-~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
|.. |...|.+++.|+.|..-.+.+.
T Consensus 317 W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 317 WDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ccCCCceeeEeecCccHHHHhhhhcc
Confidence 644 4567889999998766555443
No 135
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=2.5e-22 Score=201.51 Aligned_cols=341 Identities=15% Similarity=0.203 Sum_probs=257.6
Q ss_pred cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-cc-----ccccccCCceEEEEEEecCC
Q 009380 174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PE-----NIARIMPGRITQMKFLPCSD 247 (536)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~-----~~~~~~~~~I~~v~~~p~~~ 247 (536)
..+.++.+|...|+.+...++.- . ....++.+.+|+.... .. .+.+...+-|+++ +||..-
T Consensus 105 ~i~~~~~~~~a~v~~l~~fGe~l--i----------a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TY 171 (910)
T KOG1539|consen 105 HIRHTTLLHGAKVHLLLPFGEHL--I----------AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTY 171 (910)
T ss_pred eEEEEeccccceEEEEeeecceE--E----------EEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhh
Confidence 45556667766666555444332 2 2245678899987552 11 1222223337776 567445
Q ss_pred ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC-Cc
Q 009380 248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE-YA 326 (536)
Q Consensus 248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~-~~ 326 (536)
-+.|+.|+..|.+.||++.+ ++.+++++++...|+++.=+|-- +.++.|..+|+|.++++..++....+.++ +.
T Consensus 172 LNKIvvGs~~G~lql~Nvrt----~K~v~~f~~~~s~IT~ieqsPaL-DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~ 246 (910)
T KOG1539|consen 172 LNKIVVGSSQGRLQLWNVRT----GKVVYTFQEFFSRITAIEQSPAL-DVVAIGLENGTVIIFNLKFDKILMSFKQDWGR 246 (910)
T ss_pred eeeEEEeecCCcEEEEEecc----CcEEEEecccccceeEeccCCcc-eEEEEeccCceEEEEEcccCcEEEEEEccccc
Confidence 57899999999999999998 89999999999999999999987 89999999999999999999999999886 99
Q ss_pred eeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 009380 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405 (536)
Q Consensus 327 i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~ 405 (536)
|++++|..||..++++|+..|.+.+||+...+.+..+. .|.+.|....|.|.. .++++++.|..+++|=..++.....
T Consensus 247 VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR 325 (910)
T KOG1539|consen 247 VTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPR 325 (910)
T ss_pred eeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcch
Confidence 99999999998899999999999999999888776665 899999999999954 6999999999999997776654433
Q ss_pred CcceeecccCceeEEEEc-cCCCeEEEEeCCCcEEEEeCCCCC----------------------------cceEEe---
Q 009380 406 EPMKVLSHKRAVHSAYFS-PSGSSLATTSFDDTIGIWSGVNFE----------------------------NTSMIH--- 453 (536)
Q Consensus 406 ~~~~~~~~~~~v~~l~~s-p~g~~l~t~s~dg~I~iwd~~~~~----------------------------~~~~~~--- 453 (536)
......+|..+..++.|. .+|..+.+++.|++++.|++.... ++..+.
T Consensus 326 ~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~ 405 (910)
T KOG1539|consen 326 LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFEN 405 (910)
T ss_pred heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeeccc
Confidence 333445899999999998 488899999999988888742100 000000
Q ss_pred ------------cc------------CCCC-----------ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccccee
Q 009380 454 ------------HN------------NQTG-----------RWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVAT 498 (536)
Q Consensus 454 ------------~~------------~~~~-----------~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~ 498 (536)
|. ...| ..+.+.+++.++.|++.++|...|.|.+|++++|-....
T Consensus 406 ~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~s 485 (910)
T KOG1539|consen 406 AREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKS 485 (910)
T ss_pred chhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecc
Confidence 00 0000 113344567788999999999999999999999977777
Q ss_pred cc---CCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 499 LQ---SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 499 l~---~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
+. .|...+. .++..-. .+.+++++.+|.+.+|+..
T Consensus 486 f~~~~ah~~~V~--gla~D~~-n~~~vsa~~~Gilkfw~f~ 523 (910)
T KOG1539|consen 486 FGDSPAHKGEVT--GLAVDGT-NRLLVSAGADGILKFWDFK 523 (910)
T ss_pred cccCccccCcee--EEEecCC-CceEEEccCcceEEEEecC
Confidence 72 3444443 4555443 3789999999999999963
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=3.3e-22 Score=195.07 Aligned_cols=275 Identities=11% Similarity=0.134 Sum_probs=194.6
Q ss_pred cccccceEEecccccCcc-ccccccCCceEEEEEEecCCccEE-EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380 210 KIEVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRMV-VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISG 287 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~ 287 (536)
+.+.|+.+.+|++..... ..... ...+.+++|+| ++..+ ++++.++.|++||+.+ ......+..+.. +..
T Consensus 6 s~~~d~~v~~~d~~t~~~~~~~~~-~~~~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~----~~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 6 SNEKDNTISVIDTATLEVTRTFPV-GQRPRGITLSK--DGKLLYVCASDSDTIQVIDLAT----GEVIGTLPSGPD-PEL 77 (300)
T ss_pred EecCCCEEEEEECCCCceEEEEEC-CCCCCceEECC--CCCEEEEEECCCCeEEEEECCC----CcEEEeccCCCC-ccE
Confidence 456788999999854332 22232 34577899999 88766 6677889999999987 455555555443 567
Q ss_pred EEEecCCCCEEE-EEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC-eEEEEECCCCccceeEec
Q 009380 288 IVTQQYCLSKIF-TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG-GLNIWDVRSRKSATEWLL 365 (536)
Q Consensus 288 l~~~~~~~~~l~-s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~~ 365 (536)
++|+|++ +.++ +++.|+.|++||+.+......+.....+.+++|+|++ .+++++..++ .+.+||..+++....+.
T Consensus 78 ~~~~~~g-~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~~~- 154 (300)
T TIGR03866 78 FALHPNG-KILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDNVL- 154 (300)
T ss_pred EEECCCC-CEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEEEE-
Confidence 8999998 6665 4566899999999987766655555567899999998 7888777664 57788998877655543
Q ss_pred cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-cc--cCceeEEEEccCCCeEEEE-eCCCcEEEE
Q 009380 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SH--KRAVHSAYFSPSGSSLATT-SFDDTIGIW 441 (536)
Q Consensus 366 h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~--~~~v~~l~~sp~g~~l~t~-s~dg~I~iw 441 (536)
....+.+++|+|++..+++++..++.|++||+.+++.......... .+ ......+.|+|++++++++ +.++.|.+|
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 3345678999998854445666799999999998642110000000 01 1123568899999986554 556789999
Q ss_pred eCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc-CCCcEEEEcCCccccceeccC
Q 009380 442 SGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN-MTRTVEVISPAQRRSVATLQS 501 (536)
Q Consensus 442 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs-~dg~I~v~d~~~~~~~~~l~~ 501 (536)
|+.+++....+.+. ..+ ..+.|+|+|++|++++ .++.|.+||+.+++.+..+..
T Consensus 235 d~~~~~~~~~~~~~----~~~--~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 235 DAKTYEVLDYLLVG----QRV--WQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred ECCCCcEEEEEEeC----CCc--ceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 99887766544322 122 2367999999998874 589999999999998888864
No 137
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=2.7e-22 Score=197.64 Aligned_cols=242 Identities=12% Similarity=0.137 Sum_probs=181.2
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEECCC----CeEEEeecCCCceeEEEecCCC----------CCEEEEEECCCeEEEE
Q 009380 287 GIVTQQYCLSKIFTSCYDGLIRLMDAEK----EVFDLVYSSEYAVFSLSQQPNN----------VNTLYFGEGQGGLNIW 352 (536)
Q Consensus 287 ~l~~~~~~~~~l~s~s~dg~I~vwd~~~----~~~~~~~~~~~~i~~l~~~~~~----------~~~l~~g~~dg~i~i~ 352 (536)
++.|.+.. ..|...-.|..|+|||++. +++.....|...|+++.-.|-+ +..+.+++.|++|++|
T Consensus 329 A~~Fdet~-~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 329 ACQFDETT-DKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred EEEecCCC-ceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 56677776 7888888999999999985 4666677788888887765511 2368999999999999
Q ss_pred ECCCCccceeE-------------------------------------eccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380 353 DVRSRKSATEW-------------------------------------LLHEARINTIDFNPRNPNIMATSSTDGTACIW 395 (536)
Q Consensus 353 d~~~~~~~~~~-------------------------------------~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw 395 (536)
|+..+..-..+ -.....+.+++.+|++ ++||+|..-|+|+||
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDRGGNLRVY 486 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCccCceEEE
Confidence 98752110000 0122358999999988 799999999999999
Q ss_pred eCCCCCCCCCCcceeecccCceeEEEEcc---CCCeEEEEeCCCcEEEEeCCC-CCcceEEe------------------
Q 009380 396 DLRSMATDKPEPMKVLSHKRAVHSAYFSP---SGSSLATTSFDDTIGIWSGVN-FENTSMIH------------------ 453 (536)
Q Consensus 396 dl~~~~~~~~~~~~~~~~~~~v~~l~~sp---~g~~l~t~s~dg~I~iwd~~~-~~~~~~~~------------------ 453 (536)
|+.... ....+..|...|.|+.|+. ..++|++++.|..|.|||+.. ...+.++.
T Consensus 487 ~Lq~l~----~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 487 DLQELE----YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred Eehhhh----hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence 999854 5667779999999999986 347899999999999999642 11111110
Q ss_pred --------------------------ccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCcee-e
Q 009380 454 --------------------------HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYIS-A 506 (536)
Q Consensus 454 --------------------------~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~-~ 506 (536)
...++....+.+.+...|..+++++++.|+.|+||++.++++...|++.+.. .
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence 0011112233445667888999999999999999999999999999875433 2
Q ss_pred eeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 507 IPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 507 ~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
..+.+...| .+.|||+...|.+|.|+|.
T Consensus 643 ~lIKv~lDP-SgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 643 DLIKVILDP-SGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred ceEEEEECC-CccEEEEeecCCceEEEEe
Confidence 334667777 4699999999999999985
No 138
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=197.16 Aligned_cols=230 Identities=17% Similarity=0.270 Sum_probs=189.5
Q ss_pred cccccceEEecccccC----cccc------------------ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCC
Q 009380 210 KIEVGSCVDIGSLTLK----PENI------------------ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDS 267 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~~----~~~~------------------~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~ 267 (536)
-+.++..|.+||+... |... ..+|++.|.+++|+.. -.+.||+|+.|.+|.+||+.+
T Consensus 197 iGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-~~nVLaSgsaD~TV~lWD~~~ 275 (463)
T KOG0270|consen 197 IGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-FRNVLASGSADKTVKLWDVDT 275 (463)
T ss_pred EeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc-cceeEEecCCCceEEEEEcCC
Confidence 4678889999998532 2111 1268888999999874 557999999999999999998
Q ss_pred CCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-CeEEEeecCCCceeEEEecCCCCCEEEEEECC
Q 009380 268 QQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ 346 (536)
Q Consensus 268 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d 346 (536)
+.+..++..|.+.|.++.|+|..+..|++|++|++|.+.|.+. ..........+.|-.+.|.|...+.+++++.|
T Consensus 276 ----g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 276 ----GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred ----CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCC
Confidence 7888899999999999999999999999999999999999984 23334455678999999999999999999999
Q ss_pred CeEEEEECCCC-ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc---CceeEEEE
Q 009380 347 GGLNIWDVRSR-KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK---RAVHSAYF 422 (536)
Q Consensus 347 g~i~i~d~~~~-~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~---~~v~~l~~ 422 (536)
|+|+-+|+|.. +++.+++.|.+.|.+|++++..+.+++|++.|+.|++|++..... .....|. +...|.++
T Consensus 352 G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-----~~v~~~~~~~~rl~c~~~ 426 (463)
T KOG0270|consen 352 GTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-----KSVKEHSFKLGRLHCFAL 426 (463)
T ss_pred ceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-----cccccccccccceeeccc
Confidence 99999999975 889999999999999999999999999999999999999986432 1112221 23667778
Q ss_pred ccCC-CeEEEEeCCCcEEEEeCCCCCcc
Q 009380 423 SPSG-SSLATTSFDDTIGIWSGVNFENT 449 (536)
Q Consensus 423 sp~g-~~l~t~s~dg~I~iwd~~~~~~~ 449 (536)
.|+- -.++.|+..+.++|||+.+...+
T Consensus 427 ~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 427 DPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CCCcceEEEecCccceEEEeecccChhH
Confidence 8854 46777888888999998776544
No 139
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.3e-22 Score=182.51 Aligned_cols=293 Identities=17% Similarity=0.190 Sum_probs=212.0
Q ss_pred ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc---ccc--cccCCceEEEEEEecCCcc
Q 009380 175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE---NIA--RIMPGRITQMKFLPCSDVR 249 (536)
Q Consensus 175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~---~~~--~~~~~~I~~v~~~p~~~~~ 249 (536)
+..+|+||.+.|.++.|+.||+.|+++ ..|+.|+||++..-.. ... ..--+.-+.++|.| |-.
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~----------~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap--Dc~ 145 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATI----------SGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP--DCK 145 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEE----------eCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC--Ccc
Confidence 346799999999999999999999955 7889999999742111 111 11135678999999 665
Q ss_pred EEEE-EeCCCcEEEEECCCCCCCCCce---------EEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE
Q 009380 250 MVVA-GSKLGNITFWNLDSQQDEDNGI---------YLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL 319 (536)
Q Consensus 250 ~l~t-g~~dg~v~iwd~~~~~~~~~~~---------~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~ 319 (536)
-++. .-....+++|.+..... +... ..-..|...|..+-....+ .+|++++.|..|.+|++....+..
T Consensus 146 s~vv~~~~g~~l~vyk~~K~~d-G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lkGq~L~~ 223 (420)
T KOG2096|consen 146 SVVVSVKRGNKLCVYKLVKKTD-GSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLKGQLLQS 223 (420)
T ss_pred eEEEEEccCCEEEEEEeeeccc-CCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecCCceeee
Confidence 5444 44456899998865332 1111 1223466677777777666 999999999999999999655555
Q ss_pred eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC---C-----ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380 320 VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS---R-----KSATEWLLHEARINTIDFNPRNPNIMATSSTDGT 391 (536)
Q Consensus 320 ~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~---~-----~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~ 391 (536)
+-.....-...+.+|+| +++++++..-.|.+|.+-- | ..+..+.+|...|..++|+|+. ..++|.|.||+
T Consensus 224 idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~ 301 (420)
T KOG2096|consen 224 IDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGK 301 (420)
T ss_pred eccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCc
Confidence 55555667788999999 8999999888999998742 2 2256678999999999999976 68999999999
Q ss_pred EEEEeCCCC--CCCCCCccee-----ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeee
Q 009380 392 ACIWDLRSM--ATDKPEPMKV-----LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISS 464 (536)
Q Consensus 392 i~iwdl~~~--~~~~~~~~~~-----~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 464 (536)
++|||..-. ....+.++.. ....+.-..+..+|+|+.|+.+. ...|++|..++++....+... .+..+++
T Consensus 302 wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~--h~~~Is~ 378 (420)
T KOG2096|consen 302 WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDI--HSTTISS 378 (420)
T ss_pred EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHh--hcCceee
Confidence 999997531 1111222221 12333445899999999777755 456999999988776666432 2333444
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEc
Q 009380 465 FRAIWGWDDSCVFIGNMTRTVEVIS 489 (536)
Q Consensus 465 ~~~~~s~~g~~l~~gs~dg~I~v~d 489 (536)
+.|+++|+++++++ |+.++++.
T Consensus 379 --is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 379 --ISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred --EEecCCCcEEeeec-ceeeeeec
Confidence 77999999999987 67788875
No 140
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=3.7e-23 Score=201.15 Aligned_cols=201 Identities=19% Similarity=0.315 Sum_probs=151.9
Q ss_pred eeEEEecCCCCCEEEEEECCCeEEEEECCCCc-------cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-------SATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS 399 (536)
Q Consensus 327 i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-------~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~ 399 (536)
|+.+.|.|-+...|++++.||.|++|.+..+. +-..+..|...|+++.|||--.++|++++.|-+|++||+++
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 68888999888899999999999999987643 34567789999999999998878999999999999999999
Q ss_pred CCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE
Q 009380 400 MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG 479 (536)
Q Consensus 400 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g 479 (536)
++ ....+.+|...|..++|||+|+.+++.|.||+|++|+.+..+.... ......+ ...-++.|.-+|+++++.
T Consensus 710 ~~----~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~-Eg~gpvg--tRgARi~wacdgr~viv~ 782 (1012)
T KOG1445|consen 710 AK----LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY-EGKGPVG--TRGARILWACDGRIVIVV 782 (1012)
T ss_pred hh----hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc-cCCCCcc--CcceeEEEEecCcEEEEe
Confidence 65 5667789999999999999999999999999999999887643322 1222222 122346788899999888
Q ss_pred cCC----CcEEEEcCCccc--cceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 480 NMT----RTVEVISPAQRR--SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 480 s~d----g~I~v~d~~~~~--~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
+.| +.|.+||..+-. .+++..-.-.... ..-.+.+..+-+|++|-.|..|++|.+
T Consensus 783 Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~-LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 783 GFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSP-LVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred cccccchhhhhhhhhhhccCCcceeeeecccCcc-ccccccCCCceEEEecCCCceEEEEEe
Confidence 777 568899876542 3333221111111 112233434457889999999999975
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.4e-21 Score=192.29 Aligned_cols=238 Identities=17% Similarity=0.178 Sum_probs=194.0
Q ss_pred cccceeeeecCCCCcccccccccccccccccccceEEecccccCc--ccccccc-CCceEEEEEEecCCccEEEEEeCCC
Q 009380 182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP--ENIARIM-PGRITQMKFLPCSDVRMVVAGSKLG 258 (536)
Q Consensus 182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~--~~~~~~~-~~~I~~v~~~p~~~~~~l~tg~~dg 258 (536)
-..+|.+++++.+.+.|| .+..+|.|.+|++.... ..++.++ ...|.+++|++ +..|++.+.+|
T Consensus 24 ~Ps~I~slA~s~kS~~lA----------vsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e---~~RLFS~g~sg 90 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLA----------VSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE---GGRLFSSGLSG 90 (691)
T ss_pred eccceEEEEEeccCCcee----------eeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc---CCeEEeecCCc
Confidence 346788889988888877 35788999999985543 3334444 67899999995 45778888899
Q ss_pred cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE--ee-cCCCceeEEEecCC
Q 009380 259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL--VY-SSEYAVFSLSQQPN 335 (536)
Q Consensus 259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~--~~-~~~~~i~~l~~~~~ 335 (536)
.|.-||+.+ .+....+....+.|++++.+|.+ ..++.|+.||.+..++...+++.. .+ ...+.|.++.|+|+
T Consensus 91 ~i~EwDl~~----lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~ 165 (691)
T KOG2048|consen 91 SITEWDLHT----LKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT 165 (691)
T ss_pred eEEEEeccc----CceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCC
Confidence 999999998 78889999999999999999998 999999999988888888776543 23 34589999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCccceeEe-----c---cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380 336 NVNTLYFGEGQGGLNIWDVRSRKSATEWL-----L---HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407 (536)
Q Consensus 336 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-----~---h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~ 407 (536)
+ ..++.|+.||.|++||..++..++... . ..--|.++.|..++ .+++|..-|+|.+||...+. ..
T Consensus 166 ~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gT----Li 238 (691)
T KOG2048|consen 166 G-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGT----LI 238 (691)
T ss_pred c-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcc----hh
Confidence 8 779999999999999999988765221 1 22347788888655 79999999999999998864 55
Q ss_pred ceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380 408 MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 408 ~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~ 444 (536)
.....|...|.+++..++++++++++.|+.|..|...
T Consensus 239 qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 239 QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence 5666799999999999999999999999988877643
No 142
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.6e-23 Score=186.80 Aligned_cols=278 Identities=14% Similarity=0.236 Sum_probs=204.5
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC-CCCEEEEEECCCeEEEEECCCCeEE--Eeec-C-
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY-CLSKIFTSCYDGLIRLMDAEKEVFD--LVYS-S- 323 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~s~s~dg~I~vwd~~~~~~~--~~~~-~- 323 (536)
..+|++-.+|.|++||..+ +..+..|++|...++.+.|... ++..+.+|+.||+|++||++..... ..+. +
T Consensus 41 ~~vav~lSngsv~lyd~~t----g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT----GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccc----hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 4688888999999999998 7888999999999999999875 6689999999999999999875332 2222 2
Q ss_pred CCceeEEEecCCCCCEEEEEEC----CCeEEEEECCCCcc-ceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 009380 324 EYAVFSLSQQPNNVNTLYFGEG----QGGLNIWDVRSRKS-ATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDL 397 (536)
Q Consensus 324 ~~~i~~l~~~~~~~~~l~~g~~----dg~i~i~d~~~~~~-~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl 397 (536)
..+..+++....+ +++++|+. +-.|.+||+|..+. +..+. .|.+.|++++|+|.++++|++||.||.|.+||+
T Consensus 117 ~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 117 GTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred CCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 2467777777665 78888763 56899999998766 55554 899999999999999999999999999999999
Q ss_pred CCCCCCCCCcceeecccCceeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCcceEEeccCCCC-------ceeeeeEEEE
Q 009380 398 RSMATDKPEPMKVLSHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTSMIHHNNQTG-------RWISSFRAIW 469 (536)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 469 (536)
.... ....++.+..|...|.++.|..++ +.|.+-+...+..+|++..+.+...+....... ..-..+.. .
T Consensus 196 ~~d~-EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~ 273 (376)
T KOG1188|consen 196 KKDN-EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-H 273 (376)
T ss_pred CCCc-chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-c
Confidence 8753 234566777899999999999876 458888889999999999887555443221000 00011111 2
Q ss_pred cC-CCCEEEEEcC-CCcEEEEcCC------ccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 470 GW-DDSCVFIGNM-TRTVEVISPA------QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 470 s~-~g~~l~~gs~-dg~I~v~d~~------~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
+| +...++.++. -+...++-+. ..+.+..+.++|..++ -.+.|.- .+.++.+||+||.|.+|..
T Consensus 274 ~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiV-R~i~~~~-~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 274 SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIV-RDILFDV-KNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHH-HHHhhhc-ccceeeccCCCceEEEEec
Confidence 23 3445444444 4555555432 2345666777666665 3345543 4589999999999999984
No 143
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3e-23 Score=195.72 Aligned_cols=230 Identities=14% Similarity=0.246 Sum_probs=193.3
Q ss_pred eEEecccccCcccc-ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC
Q 009380 216 CVDIGSLTLKPENI-ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC 294 (536)
Q Consensus 216 ~v~lw~~~~~~~~~-~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 294 (536)
.|.+|.+......+ .-..++.|.+++-+| +|.+|+.|+..|.|++|.+.+ +..+..+.+|-..|+|+.|+.|+
T Consensus 62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n--~G~~l~ag~i~g~lYlWelss----G~LL~v~~aHYQ~ITcL~fs~dg 135 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIVLPGPVHALASSN--LGYFLLAGTISGNLYLWELSS----GILLNVLSAHYQSITCLKFSDDG 135 (476)
T ss_pred cccccccCchhhhhhhcccccceeeeecCC--CceEEEeecccCcEEEEEecc----ccHHHHHHhhccceeEEEEeCCC
Confidence 78889874443333 234589999999999 999999999999999999999 78888999999999999999999
Q ss_pred CCEEEEEECCCeEEEEECCC----------CeEEEeecCCCceeEEEecCCC-CCEEEEEECCCeEEEEECCCCccceeE
Q 009380 295 LSKIFTSCYDGLIRLMDAEK----------EVFDLVYSSEYAVFSLSQQPNN-VNTLYFGEGQGGLNIWDVRSRKSATEW 363 (536)
Q Consensus 295 ~~~l~s~s~dg~I~vwd~~~----------~~~~~~~~~~~~i~~l~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~ 363 (536)
.+|+|||.||.|.+|++.. .....+..|.-+|+++...+.+ ...+++++.|.++++||+..+..+.++
T Consensus 136 -s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 136 -SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred -cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence 9999999999999998743 1223444688899999987763 258999999999999999999888777
Q ss_pred eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC------------CCCCcceeecccC--ceeEEEEccCCCeE
Q 009380 364 LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT------------DKPEPMKVLSHKR--AVHSAYFSPSGSSL 429 (536)
Q Consensus 364 ~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~------------~~~~~~~~~~~~~--~v~~l~~sp~g~~l 429 (536)
. ....+.+++..|.+ ..+..|+.+|.|.+.++.+... .......+.+|.+ .|+|++++-||.+|
T Consensus 215 ~-fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlL 292 (476)
T KOG0646|consen 215 T-FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLL 292 (476)
T ss_pred e-cCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEE
Confidence 6 67899999999965 7999999999999998876541 1223344557887 99999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCcceEEec
Q 009380 430 ATTSFDDTIGIWSGVNFENTSMIHH 454 (536)
Q Consensus 430 ~t~s~dg~I~iwd~~~~~~~~~~~~ 454 (536)
++|+.||.+.|||+.+.++++++.+
T Consensus 293 lSGd~dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 293 LSGDEDGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred EeeCCCCCEEEEecchHHHHHHHhh
Confidence 9999999999999998888877753
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=3.3e-23 Score=190.35 Aligned_cols=213 Identities=23% Similarity=0.360 Sum_probs=177.5
Q ss_pred cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCC------------CCCCCceEEeccCCCCEEEEEEecCCCCEE
Q 009380 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQ------------QDEDNGIYLFRTHLGPISGIVTQQYCLSKI 298 (536)
Q Consensus 231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~------------~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 298 (536)
-.|.+.|+.+..++..+..+.++=+..|.|.||++... .....+++++.+|.+.=.+|+|+|-....|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 45778888888888555567777788999999998632 113578899999999999999999654678
Q ss_pred EEEECCCeEEEEECCCCeEE----EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc--ceeEeccCCCeEE
Q 009380 299 FTSCYDGLIRLMDAEKEVFD----LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS--ATEWLLHEARINT 372 (536)
Q Consensus 299 ~s~s~dg~I~vwd~~~~~~~----~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~ 372 (536)
+||.--+.|++|...++... .+.+|...|-.++|+|...+.|++|+.||+|+|||+|.+.. ....+.|.+.|+-
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 99988899999999887553 34569999999999999989999999999999999998732 2223689999999
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCC
Q 009380 373 IDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 373 i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~ 445 (536)
|.|+..-+ +||+|+.||+++|||+|..+.. ..+..+..|..+|++|.|+| +...|++++.|.+|.|||+.-
T Consensus 308 ISWnr~~~-lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 308 ISWNRREP-LLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred EEccCCcc-eeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999775 9999999999999999998754 34445668999999999999 557889999999999999853
No 145
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=8.8e-23 Score=184.52 Aligned_cols=323 Identities=15% Similarity=0.125 Sum_probs=225.6
Q ss_pred cccccceeeeecCC-----CCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecC--CccEEE
Q 009380 180 KDEFNGFKTCKDEG-----LGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCS--DVRMVV 252 (536)
Q Consensus 180 ~~~~~~v~~~~~s~-----~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~--~~~~l~ 252 (536)
.+|...+..++|.. .-..++......+-++....|+.+++.....+ ..|+...+.++|+-.. ...++|
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D-----~d~~Esfytcsw~yd~~~~~p~la 109 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYAD-----EDHDESFYTCSWSYDSNTGNPFLA 109 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccC-----CCCCcceEEEEEEecCCCCCeeEE
Confidence 44556666666652 22334443333444444444444444332222 2467788899998632 246899
Q ss_pred EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee----cCCCcee
Q 009380 253 AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY----SSEYAVF 328 (536)
Q Consensus 253 tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~----~~~~~i~ 328 (536)
+|+.-|.|+|.|+.. ......+.+|...|+.|.|+|+.++++++||.|.+|++|++++..+..++ +|...|.
T Consensus 110 ~~G~~GvIrVid~~~----~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL 185 (385)
T KOG1034|consen 110 AGGYLGVIRVIDVVS----GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL 185 (385)
T ss_pred eecceeEEEEEecch----hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence 999999999999998 78889999999999999999999999999999999999999999998887 4889999
Q ss_pred EEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCE-EEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380 329 SLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNI-MATSSTDGTACIWDLRSMATDKPEP 407 (536)
Q Consensus 329 ~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~-l~s~s~dg~i~iwdl~~~~~~~~~~ 407 (536)
++.|+.++ ..|++++.|.+|.+|++...+....+.. ++.|+|++... |-+ -.+.+.|.
T Consensus 186 SvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~------s~~~~~~~t~~pfpt----~~~~fp~f---------- 244 (385)
T KOG1034|consen 186 SVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLEL------SITYSPNKTTRPFPT----PKTHFPDF---------- 244 (385)
T ss_pred EEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhh------hcccCCCCccCcCCc----cccccccc----------
Confidence 99999999 7999999999999999986654333331 25566644210 000 01111111
Q ss_pred ceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC-Cc----------ceEEeccCCCCceeeeeEEEEcCCCCEE
Q 009380 408 MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF-EN----------TSMIHHNNQTGRWISSFRAIWGWDDSCV 476 (536)
Q Consensus 408 ~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~s~~g~~l 476 (536)
.....|...|.|+.|- |+++++-+.++.|..|..-.. +. ...+.+..-....+..++.+|.+-++.|
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 1334588999999996 788999999999999987211 11 1222222233334556677888889999
Q ss_pred EEEcCCCcEEEEcCCccccc--eeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 477 FIGNMTRTVEVISPAQRRSV--ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 477 ~~gs~dg~I~v~d~~~~~~~--~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
+.|+..|.|.+||+...++. .++..+......-..+|+- |+..|+..++||.|.-||.
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 99999999999999887653 2222222222223456665 6799999999999999984
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.4e-22 Score=194.64 Aligned_cols=288 Identities=14% Similarity=0.159 Sum_probs=219.1
Q ss_pred cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
..+.++|.+.|.+|...| .|.+|++|+.||+|+||.+.+ +.++..+.- .+.|.||+|+|.+...+++++.+..
T Consensus 393 ~lvyrGHtg~Vr~iSvdp--~G~wlasGsdDGtvriWEi~T----gRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDP--SGEWLASGSDDGTVRIWEIAT----GRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred eeeEeccCCeEEEEEecC--CcceeeecCCCCcEEEEEeec----ceEEEEEee-cceeEEEEecCCCCceeEEEEecCc
Confidence 356789999999999999 999999999999999999998 788888764 4589999999987555665555555
Q ss_pred EEEEECCCC--------------------------------------eEEEeecCCCceeEEEecCCCCCEEEEEECC--
Q 009380 307 IRLMDAEKE--------------------------------------VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ-- 346 (536)
Q Consensus 307 I~vwd~~~~--------------------------------------~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d-- 346 (536)
+.|.+..-| .......|...|..+.|+..| .+|++...+
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~ 544 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATVMPDSG 544 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEeccCCC
Confidence 555443111 012445677889999999999 788876653
Q ss_pred -CeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC
Q 009380 347 -GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS 425 (536)
Q Consensus 347 -g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~ 425 (536)
..|.|+++.......-|....+.|.++.|+|..+ +|++++ ...|+|||+... ..+..+......|.+++.+|.
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kq----elvKkL~tg~kwiS~msihp~ 618 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQ----ELVKKLLTGSKWISSMSIHPN 618 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHH----HHHHHHhcCCeeeeeeeecCC
Confidence 4799999988777667766778899999999875 555555 467999999873 244445566788999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCC-CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc------c---cc
Q 009380 426 GSSLATTSFDDTIGIWSGVNF-ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ------R---RS 495 (536)
Q Consensus 426 g~~l~t~s~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~------~---~~ 495 (536)
|..|++++.|+.+..||+.-. ++..++.++....+ .++|++.-.+|++|+.||.+.||.-.- . -+
T Consensus 619 GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr-----~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVP 693 (733)
T KOG0650|consen 619 GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVR-----SVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVP 693 (733)
T ss_pred CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhh-----hhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEe
Confidence 999999999999999999744 45555554433222 266888888999999999999985321 1 13
Q ss_pred ceeccCCcee--eeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 496 VATLQSPYIS--AIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 496 ~~~l~~~~~~--~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
+..|.+|... .-.....|||.. .||.+++.||.|++|.
T Consensus 694 lK~L~gH~~~~~~gVLd~~wHP~q-pWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 694 LKRLRGHEKTNDLGVLDTIWHPRQ-PWLFSAGADGTIRLFT 733 (733)
T ss_pred eeeccCceeecccceEeecccCCC-ceEEecCCCceEEeeC
Confidence 5666776544 122467799965 8999999999999993
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=9.5e-22 Score=176.38 Aligned_cols=261 Identities=14% Similarity=0.159 Sum_probs=196.3
Q ss_pred ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec-CCCCEEEEEECCCe
Q 009380 228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ-YCLSKIFTSCYDGL 306 (536)
Q Consensus 228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~~l~s~s~dg~ 306 (536)
.+..+|.+-|.++.|.+ .|+.+|+|+.|++|+|||.........+....+.|.+.|..|.|.+ .-++.+++|++|++
T Consensus 7 pi~s~h~DlihdVs~D~--~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDF--YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred ccccCCcceeeeeeecc--cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 34577889999999999 9999999999999999998765555678888999999999999964 33389999999999
Q ss_pred EEEEECCCC----------eEEEeecCCCceeEEEecCCCC-CEEEEEECCCeEEEEECCCCccc------eeEe-----
Q 009380 307 IRLMDAEKE----------VFDLVYSSEYAVFSLSQQPNNV-NTLYFGEGQGGLNIWDVRSRKSA------TEWL----- 364 (536)
Q Consensus 307 I~vwd~~~~----------~~~~~~~~~~~i~~l~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~------~~~~----- 364 (536)
+.||.-... ....+......|++++|.|... -.+++++.||.|+||+.-..-.+ ..++
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence 999975311 1233445678999999998642 46888999999999987654322 2222
Q ss_pred --ccCCCeEEEEEecCC--CCEEEEEeCC-----CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC----CCeEEE
Q 009380 365 --LHEARINTIDFNPRN--PNIMATSSTD-----GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS----GSSLAT 431 (536)
Q Consensus 365 --~h~~~i~~i~~~p~~--~~~l~s~s~d-----g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~----g~~l~t 431 (536)
.+.....|+.|+|.. +.+||.|+.+ +.++||.......+-..+-.+.+|..+|+.|+|.|+ ..+|++
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 356678899999742 3478888865 479999887765444455556689999999999994 358999
Q ss_pred EeCCCcEEEEeCCCCC-----------------cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 432 TSFDDTIGIWSGVNFE-----------------NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 432 ~s~dg~I~iwd~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
++.|| |+||.+.... ++..+.....+ .-...++.|+-.|..|.+.+.||.|++|...-.
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H--~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH--NGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC--CCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 99999 9999986311 11122111111 123445789999999999999999999986543
No 148
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.5e-22 Score=188.61 Aligned_cols=268 Identities=17% Similarity=0.183 Sum_probs=198.7
Q ss_pred EEEEeCC-CcEEEEECCCCCCCCCceEEeccCC-CCEEEEE-EecCCCCEEEEEEC-CCeEEEEECCCCeEEE-eecCCC
Q 009380 251 VVAGSKL-GNITFWNLDSQQDEDNGIYLFRTHL-GPISGIV-TQQYCLSKIFTSCY-DGLIRLMDAEKEVFDL-VYSSEY 325 (536)
Q Consensus 251 l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~h~-~~V~~l~-~~~~~~~~l~s~s~-dg~I~vwd~~~~~~~~-~~~~~~ 325 (536)
+.+++.| .++.+||+.+ +.....+++.. ..-.++. ..+ .+++++.. -..|.+|.+.+..... ..-..+
T Consensus 10 ~sssS~d~~~~~~~dl~T----Gt~~~~ykg~~~a~~~sl~~l~~---~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg 82 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDLRT----GTSLLQYKGSYLAQAASLTALNN---EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPG 82 (476)
T ss_pred EeccCCCCcceeEEecCC----CceeEEecCcccccchhhhhhch---hheeeecccCccccccccCchhhhhhhccccc
Confidence 3344444 4599999998 56666666542 1111222 222 46666544 4578999988754333 334568
Q ss_pred ceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC---
Q 009380 326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT--- 402 (536)
Q Consensus 326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~--- 402 (536)
+|.+++-+|.| .+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+.|+ .+|+|||.||.|.+|++-..-.
T Consensus 83 ~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 83 PVHALASSNLG-YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ceeeeecCCCc-eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeeccccc
Confidence 89999999998 788888899999999999999999999999999999999987 6999999999999998754211
Q ss_pred --CCCCcceeecccCceeEEEEccC--CCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEE
Q 009380 403 --DKPEPMKVLSHKRAVHSAYFSPS--GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFI 478 (536)
Q Consensus 403 --~~~~~~~~~~~~~~v~~l~~sp~--g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 478 (536)
.......+..|.-+|+.+...+- ..+|+|+|.|.++++||+..+..+.++.... ...+++.+|-+..+++
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~------si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS------SIKAVALDPAERVVYI 234 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC------cceeEEEcccccEEEe
Confidence 11233445589999999998874 3589999999999999999998887775433 2223667999999999
Q ss_pred EcCCCcEEEEcCCccc----------------cceeccCCce-eeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 479 GNMTRTVEVISPAQRR----------------SVATLQSPYI-SAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 479 gs~dg~I~v~d~~~~~----------------~~~~l~~~~~-~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
|+.+|.|.+.++.... .+..+.+|.. +.+ ++++.+- |+..|++|+.||+|+|||+
T Consensus 235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I-TcLais~-DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI-TCLAIST-DGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcce-eEEEEec-CccEEEeeCCCCCEEEEec
Confidence 9999999988764332 2344455554 233 2344443 7899999999999999997
No 149
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2.8e-24 Score=212.18 Aligned_cols=234 Identities=19% Similarity=0.254 Sum_probs=198.8
Q ss_pred cccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEEeCCC
Q 009380 180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGSKLG 258 (536)
Q Consensus 180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg 258 (536)
..|...|.++..-..++.+. +++.+-.+.||..... ...-+.+|...|-++.|++ +..+|++|+.+|
T Consensus 25 ~~hsaav~~lk~~~s~r~~~----------~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~--~E~Llaagsasg 92 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLV----------TGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT--SERLLAAGSASG 92 (825)
T ss_pred hhhhhhhceeeeeccceeec----------cCCCceeeccccccCCchhheeeccCCcceeeecCc--chhhhcccccCC
Confidence 45667777777766666666 4466678889987322 2233589999999999999 889999999999
Q ss_pred cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-ecCCCceeEEEecCCCC
Q 009380 259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNNV 337 (536)
Q Consensus 259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~ 337 (536)
+|++||+.. ...++++.+|...+..+.|+|.+ .++++++.|+.+++||++...+... .+|...+.++.|+|+|
T Consensus 93 tiK~wDlee----Ak~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G- 166 (825)
T KOG0267|consen 93 TIKVWDLEE----AKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG- 166 (825)
T ss_pred ceeeeehhh----hhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCC-
Confidence 999999997 78899999999999999999999 9999999999999999995544444 4578889999999999
Q ss_pred CEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCce
Q 009380 338 NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAV 417 (536)
Q Consensus 338 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v 417 (536)
.+++.|+.|..++|||+..|+.+..|..|...+..+.|+|.. .++++|+.|++|++||+++.. .+.........|
T Consensus 167 r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe----~I~s~~~~~~~v 241 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFE----VISSGKPETDGV 241 (825)
T ss_pred ceeeccCCcceeeeecccccccccccccccccccccccCchh-hhhccCCCCceeeeeccceeE----EeeccCCccCCc
Confidence 899999999999999999999999999999999999999966 799999999999999999742 333333457899
Q ss_pred eEEEEccCCCeEEEEeCCC
Q 009380 418 HSAYFSPSGSSLATTSFDD 436 (536)
Q Consensus 418 ~~l~~sp~g~~l~t~s~dg 436 (536)
.+..|+|++..+++|....
T Consensus 242 ~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 242 RSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeeeecCCceeeecCchhh
Confidence 9999999999888887654
No 150
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=6.1e-24 Score=209.82 Aligned_cols=245 Identities=20% Similarity=0.282 Sum_probs=208.3
Q ss_pred eEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC
Q 009380 216 CVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL 295 (536)
Q Consensus 216 ~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 295 (536)
.+++|+. +..-.|...|.++..-. .++.+++|+.|..+.+|.+.. ...+..+.+|..+|.++.|++..
T Consensus 15 ~Lr~~~~-----~~~~~hsaav~~lk~~~--s~r~~~~Gg~~~k~~L~~i~k----p~~i~S~~~hespIeSl~f~~~E- 82 (825)
T KOG0267|consen 15 KLRVWDT-----REFVAHSAAVGCLKIRK--SSRSLVTGGEDEKVNLWAIGK----PNAITSLTGHESPIESLTFDTSE- 82 (825)
T ss_pred ccccccc-----hhhhhhhhhhceeeeec--cceeeccCCCceeeccccccC----CchhheeeccCCcceeeecCcch-
Confidence 4556664 23467888899998855 789999999999999999987 56677799999999999999997
Q ss_pred CEEEEEECCCeEEEEECCCCe-EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEE
Q 009380 296 SKIFTSCYDGLIRLMDAEKEV-FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTID 374 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~~~-~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~ 374 (536)
.+|++|+.+|+|++||++..+ +..+++|...+.+++|+|-+ .+++.|+.|+.+.+||++...+.+.+.+|...|..+.
T Consensus 83 ~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 83 RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 899999999999999999875 45667899999999999998 7889999999999999999999999999999999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEec
Q 009380 375 FNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHH 454 (536)
Q Consensus 375 ~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~ 454 (536)
|+|+| .+++.|+.|.+++|||+..++ ....+..|...+.++.|+|..-++++|+.|++|++||+++++.+.....
T Consensus 162 lsP~G-r~v~~g~ed~tvki~d~~agk----~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~ 236 (825)
T KOG0267|consen 162 LSPDG-RWVASGGEDNTVKIWDLTAGK----LSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP 236 (825)
T ss_pred ecCCC-ceeeccCCcceeeeecccccc----cccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC
Confidence 99988 799999999999999999864 4445567999999999999999999999999999999987765554432
Q ss_pred cCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380 455 NNQTGRWISSFRAIWGWDDSCVFIGNMTR 483 (536)
Q Consensus 455 ~~~~~~~~~~~~~~~s~~g~~l~~gs~dg 483 (536)
. . ..+-+..|++++..+++|....
T Consensus 237 ~---~--~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 237 E---T--DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred c---c--CCceeeeecCCceeeecCchhh
Confidence 2 1 1222367999999999886553
No 151
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=8e-22 Score=176.87 Aligned_cols=259 Identities=14% Similarity=0.185 Sum_probs=198.3
Q ss_pred ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-----ccccccccCCceEEEEEEecCCcc
Q 009380 175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-----PENIARIMPGRITQMKFLPCSDVR 249 (536)
Q Consensus 175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-----~~~~~~~~~~~I~~v~~~p~~~~~ 249 (536)
..-+-.+|.|-|+++.|.+.|+.++++ +.|+.+.+||...+ .....+.|.+.|..|.|.+.+-|+
T Consensus 5 ~~pi~s~h~DlihdVs~D~~GRRmAtC----------SsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 5 MAPIDSGHKDLIHDVSFDFYGRRMATC----------SSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred ccccccCCcceeeeeeecccCceeeec----------cCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc
Confidence 344567899999999999999999955 78889999996332 234568899999999999888999
Q ss_pred EEEEEeCCCcEEEEECCCCCC-----CCCceEEeccCCCCEEEEEEecCC-CCEEEEEECCCeEEEEECCCCe-------
Q 009380 250 MVVAGSKLGNITFWNLDSQQD-----EDNGIYLFRTHLGPISGIVTQQYC-LSKIFTSCYDGLIRLMDAEKEV------- 316 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~-----~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~s~s~dg~I~vwd~~~~~------- 316 (536)
.+|+++.|+++.||.-..... ......++......|++|.|.|.. +-.|++++.||.||||+.-...
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 999999999999998642211 234456777788999999999963 2678999999999999875421
Q ss_pred ---EE----EeecCCCceeEEEecCCC--CCEEEEEECC-----CeEEEEECCCCc----cceeEeccCCCeEEEEEecC
Q 009380 317 ---FD----LVYSSEYAVFSLSQQPNN--VNTLYFGEGQ-----GGLNIWDVRSRK----SATEWLLHEARINTIDFNPR 378 (536)
Q Consensus 317 ---~~----~~~~~~~~i~~l~~~~~~--~~~l~~g~~d-----g~i~i~d~~~~~----~~~~~~~h~~~i~~i~~~p~ 378 (536)
+. ..-.+..+..|+.|+|.. ..+|++|+.+ +.+.||....+. .+.++..|..+|++|+|.|.
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 11 111356788899998742 3578888766 578888765432 35667799999999999995
Q ss_pred CC---CEEEEEeCCCcEEEEeCCCCC----------CC-----CC-CcceeecccCceeEEEEccCCCeEEEEeCCCcEE
Q 009380 379 NP---NIMATSSTDGTACIWDLRSMA----------TD-----KP-EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIG 439 (536)
Q Consensus 379 ~~---~~l~s~s~dg~i~iwdl~~~~----------~~-----~~-~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~ 439 (536)
-+ ++||+++.|| |+||.+.... .. .. .+..+..|++.|+.+.|+-.|..|++.+.||.|+
T Consensus 235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR 313 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR 313 (361)
T ss_pred cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence 32 4899999999 9999988421 00 00 1112336999999999999999999999999999
Q ss_pred EEeCC
Q 009380 440 IWSGV 444 (536)
Q Consensus 440 iwd~~ 444 (536)
+|...
T Consensus 314 LWkan 318 (361)
T KOG2445|consen 314 LWKAN 318 (361)
T ss_pred ehhhh
Confidence 99753
No 152
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6.6e-22 Score=191.63 Aligned_cols=296 Identities=15% Similarity=0.188 Sum_probs=224.6
Q ss_pred ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEE
Q 009380 175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAG 254 (536)
Q Consensus 175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg 254 (536)
.-..++||.+.|.++...+.|..|+ +++.||+|++|.+........-...+.|.||+|+|..+-.+||++
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wla----------sGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLA----------SGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceee----------ecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEE
Confidence 4467899999999999999999999 568999999999866544444445789999999996555666666
Q ss_pred eCCCcEEEEECCCC---------------------------------CCCCCceEEeccCCCCEEEEEEecCCCCEEEEE
Q 009380 255 SKLGNITFWNLDSQ---------------------------------QDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTS 301 (536)
Q Consensus 255 ~~dg~v~iwd~~~~---------------------------------~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~ 301 (536)
-... +.|-+..-+ ......+.....|...|..+.|+..| .||++.
T Consensus 462 ~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV 539 (733)
T KOG0650|consen 462 VGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATV 539 (733)
T ss_pred ecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEe
Confidence 5433 444443211 00112234555688999999999999 999998
Q ss_pred ECC---CeEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEec
Q 009380 302 CYD---GLIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNP 377 (536)
Q Consensus 302 s~d---g~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p 377 (536)
.-+ ..|.|+++.+...+.-+ ...+.|.++.|+|.. .+|++++.. .|+|||+..+..+..+......|.+++.+|
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~-p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK-PYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC-ceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence 764 57889999887665555 567889999999998 567777765 899999999888888887888999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC----CcceEEe
Q 009380 378 RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF----ENTSMIH 453 (536)
Q Consensus 378 ~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~----~~~~~~~ 453 (536)
.| .-|+.|+.|+.++.||+.-.. .....+..|...+++++|++.-.+|++|+.||++.||--.-. +....+.
T Consensus 618 ~G-Dnli~gs~d~k~~WfDldlss---kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVP 693 (733)
T KOG0650|consen 618 NG-DNLILGSYDKKMCWFDLDLSS---KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVP 693 (733)
T ss_pred CC-CeEEEecCCCeeEEEEcccCc---chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEe
Confidence 77 467788899999999998743 123344479999999999999999999999999999863311 1111111
Q ss_pred ccCCCC----ceeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380 454 HNNQTG----RWISSFRAIWGWDDSCVFIGNMTRTVEVI 488 (536)
Q Consensus 454 ~~~~~~----~~~~~~~~~~s~~g~~l~~gs~dg~I~v~ 488 (536)
.....+ ..+.++.+.|+|...+|++++.||.|++|
T Consensus 694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 111112 22446778899999999999999999998
No 153
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-20 Score=186.01 Aligned_cols=283 Identities=17% Similarity=0.212 Sum_probs=211.0
Q ss_pred ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC-CCCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380 232 IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH-LGPISGIVTQQYCLSKIFTSCYDGLIRLM 310 (536)
Q Consensus 232 ~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~l~s~s~dg~I~vw 310 (536)
..+..|.++||+. +.+.||.+-.+|.|-||++... ......+.++ ...|.+++|.+. ..|++.+.+|.|.-|
T Consensus 23 ~~Ps~I~slA~s~--kS~~lAvsRt~g~IEiwN~~~~---w~~~~vi~g~~drsIE~L~W~e~--~RLFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 23 YKPSEIVSLAYSH--KSNQLAVSRTDGNIEIWNLSNN---WFLEPVIHGPEDRSIESLAWAEG--GRLFSSGLSGSITEW 95 (691)
T ss_pred eeccceEEEEEec--cCCceeeeccCCcEEEEccCCC---ceeeEEEecCCCCceeeEEEccC--CeEEeecCCceEEEE
Confidence 3467899999999 8889999999999999999974 3444445444 467999999954 689999999999999
Q ss_pred ECCCCeEEEeec-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee--EeccCCCeEEEEEecCCCCEEEEEe
Q 009380 311 DAEKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE--WLLHEARINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 311 d~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~--~~~h~~~i~~i~~~p~~~~~l~s~s 387 (536)
|+.+.+....+. ..+.|++++.+|.+ ..+++|+.||.+..++...++..+. +....+.|.+++|+|++ ..+++|+
T Consensus 96 Dl~~lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs 173 (691)
T KOG2048|consen 96 DLHTLKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG-TKIAGGS 173 (691)
T ss_pred ecccCceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc-cEEEecc
Confidence 999987766554 56899999999998 8999999999888888877765433 33456899999999988 6799999
Q ss_pred CCCcEEEEeCCCCCCCCCCcceeec----ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceee
Q 009380 388 TDGTACIWDLRSMATDKPEPMKVLS----HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWIS 463 (536)
Q Consensus 388 ~dg~i~iwdl~~~~~~~~~~~~~~~----~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 463 (536)
.||.|++||+.++.........+.+ ...-|+++.|-.++ .|++|..-|+|.+||...+.....+..... .
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a-----d 247 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDA-----D 247 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhc-----c
Confidence 9999999999986521100001111 23357788887555 599999999999999998887766643222 2
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc---ceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380 464 SFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS---VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533 (536)
Q Consensus 464 ~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~---~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW 533 (536)
+++++-.+++.+|++++.|+.|.-|...+... ......+|...+.+ ++.. +..|++|+.|+.|.+=
T Consensus 248 Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs-~av~---~~~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 248 VLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRS-MAVI---ENALISGGRDFTLAIC 316 (691)
T ss_pred eeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccccee-eeee---cceEEecceeeEEEEc
Confidence 33455678889999999999998888776633 11111222223322 3333 2589999999988763
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.3e-21 Score=185.65 Aligned_cols=284 Identities=12% Similarity=0.181 Sum_probs=210.6
Q ss_pred ceEEeccccc---CccccccccCCceEEEEEEecCCc-cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEE
Q 009380 215 SCVDIGSLTL---KPENIARIMPGRITQMKFLPCSDV-RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVT 290 (536)
Q Consensus 215 g~v~lw~~~~---~~~~~~~~~~~~I~~v~~~p~~~~-~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~ 290 (536)
..++|||+.. .+..+.+..+-.|.++.|.. .. -.+++.+.|..|++|.-......-..+.... ...-.|++.
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~--~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~--gd~~~Cv~~ 87 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQR--RNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLT--GDNAFCVAC 87 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccc--cceEEEeecCCceeEEEecccCCCCccceeeccc--cchHHHHhh
Confidence 3788998743 33333333355699999987 33 2233345677899998664321112222222 234456665
Q ss_pred ecCCCCEEEEEECCCeEEEEECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc-CC
Q 009380 291 QQYCLSKIFTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH-EA 368 (536)
Q Consensus 291 ~~~~~~~l~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h-~~ 368 (536)
.... -++++|+..+.|+|||++...+. .+.+|...|+++.++..+ .+|++++..|.|.|..+.++.....|... ..
T Consensus 88 ~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq 165 (673)
T KOG4378|consen 88 ASQS-LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ 165 (673)
T ss_pred hhcc-eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCC
Confidence 5555 89999999999999999965544 445788999999999887 89999999999999999999887777733 45
Q ss_pred CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCC
Q 009380 369 RINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFE 447 (536)
Q Consensus 369 ~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~ 447 (536)
.|.-+.|+|....+|.+++.+|.|.+||+.... +.......|..+...|+|+| +..+|++.+.|..|.+||.+...
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~s---p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS---PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEeccCCC---cccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 567899999888899999999999999998743 22233347999999999999 56788999999999999998776
Q ss_pred cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc-ccceeccCCceeeeeeeEeecC
Q 009380 448 NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHP 515 (536)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~-~~~~~l~~~~~~~~~~~~~~~p 515 (536)
....+....+ ++. ++|+++|.+|++|+..|.|..||++.. .++..+..|...+. +++|.|
T Consensus 243 s~~~l~y~~P----lst--vaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt--~vafq~ 303 (673)
T KOG4378|consen 243 STDRLTYSHP----LST--VAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVT--RVAFQP 303 (673)
T ss_pred ccceeeecCC----cce--eeecCCceEEEeecCCceEEEEecccCCCCceEeeeccccee--EEEeee
Confidence 6666643332 333 779999999999999999999999765 45666666655544 455554
No 155
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=2.3e-21 Score=189.32 Aligned_cols=271 Identities=15% Similarity=0.153 Sum_probs=188.4
Q ss_pred cccccceEEeccccc---C--cc--ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC
Q 009380 210 KIEVGSCVDIGSLTL---K--PE--NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL 282 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~---~--~~--~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~ 282 (536)
....+|.|.|+|... . .. .....|.+.|..+.|.| ....|++++.|.++++||+.... ......+.+|.
T Consensus 69 vadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap--ge~~lVsasGDsT~r~Wdvk~s~--l~G~~~~~GH~ 144 (720)
T KOG0321|consen 69 VADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP--GESLLVSASGDSTIRPWDVKTSR--LVGGRLNLGHT 144 (720)
T ss_pred EecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC--CceeEEEccCCceeeeeeeccce--eecceeecccc
Confidence 456778899998632 1 11 23457999999999999 77899999999999999999743 12223589999
Q ss_pred CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE----------------------------EEeecCCCc----eeEE
Q 009380 283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF----------------------------DLVYSSEYA----VFSL 330 (536)
Q Consensus 283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~----------------------------~~~~~~~~~----i~~l 330 (536)
+.|.+++|.|.++..|++|+.||.|.|||++-... .....+... |+.+
T Consensus 145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv 224 (720)
T KOG0321|consen 145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV 224 (720)
T ss_pred cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence 99999999999999999999999999999863210 000112223 4444
Q ss_pred EecCCCCCEEEEEEC-CCeEEEEECCCCccceeE--------ecc---CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 009380 331 SQQPNNVNTLYFGEG-QGGLNIWDVRSRKSATEW--------LLH---EARINTIDFNPRNPNIMATSSTDGTACIWDLR 398 (536)
Q Consensus 331 ~~~~~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~--------~~h---~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~ 398 (536)
.| .|. ..|++++. |+.|++||++........ ..| .-.+.++.....|.+++|+|. |+.|++|+++
T Consensus 225 ~f-kDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~ 301 (720)
T KOG0321|consen 225 LF-KDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMR 301 (720)
T ss_pred EE-ecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEecc
Confidence 44 444 67887776 999999999976543322 223 234667777776765555555 9999999999
Q ss_pred CCCCCCCCcceeecccC--ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC-E
Q 009380 399 SMATDKPEPMKVLSHKR--AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS-C 475 (536)
Q Consensus 399 ~~~~~~~~~~~~~~~~~--~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~ 475 (536)
..... ....+.++.. .-..-..+|++.++++|+.|...++|.+.+.+....+ ..++.+.++.++|.|... -
T Consensus 302 s~s~s--P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~----l~Ght~eVt~V~w~pS~~t~ 375 (720)
T KOG0321|consen 302 SLSIS--PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL----LLGHTREVTTVRWLPSATTP 375 (720)
T ss_pred ccCcC--chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh----hhCcceEEEEEeeccccCCC
Confidence 86421 1112222221 1122346889999999999999999999876554433 233344555577876532 3
Q ss_pred EEEEcCCCcEEEEcCCcc
Q 009380 476 VFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 476 l~~gs~dg~I~v~d~~~~ 493 (536)
+++++.|..++||++..+
T Consensus 376 v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 376 VATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ceeeccCcceEEEeccCc
Confidence 666699999999999654
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.4e-22 Score=210.36 Aligned_cols=286 Identities=18% Similarity=0.261 Sum_probs=213.5
Q ss_pred eEEEEEEecCCcc-EEEEE----------eCCCcEEEEECCCCCCCC--CceEEeccCCCCEEEEEEecCCCC---EEEE
Q 009380 237 ITQMKFLPCSDVR-MVVAG----------SKLGNITFWNLDSQQDED--NGIYLFRTHLGPISGIVTQQYCLS---KIFT 300 (536)
Q Consensus 237 I~~v~~~p~~~~~-~l~tg----------~~dg~v~iwd~~~~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~---~l~s 300 (536)
--.++|+| .+. ++++| +.+.++-||.++...... +.+..+. .......++|.+.+.. +|+.
T Consensus 9 ta~~awSp--~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 9 TATFAWSP--ASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred cceEEecC--CCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeec
Confidence 34578888 554 56655 334566677665432211 2222222 2345789999988744 4899
Q ss_pred EECCCeEEEEECCCC---e----EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeE
Q 009380 301 SCYDGLIRLMDAEKE---V----FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARIN 371 (536)
Q Consensus 301 ~s~dg~I~vwd~~~~---~----~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~ 371 (536)
|..||.|.+||...- . +.....|.+.|..+.|++..+++|++|+.||.|.|||+...+.-.+.. ...+.|.
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~ 165 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK 165 (1049)
T ss_pred cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence 999999999998652 1 223346899999999999998999999999999999999866544442 3567899
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc--CceeEEEEccCC-CeEEEEeCCC---cEEEEeCCC
Q 009380 372 TIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK--RAVHSAYFSPSG-SSLATTSFDD---TIGIWSGVN 445 (536)
Q Consensus 372 ~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~--~~v~~l~~sp~g-~~l~t~s~dg---~I~iwd~~~ 445 (536)
+++|+..-.++|++++.+|.+.|||+|..+ .++.+..|. ..+..+.|+|+. ..|++++.|. .|.+||++.
T Consensus 166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~----pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 166 CLSWNRKVSHILASGSPSGRAVIWDLRKKK----PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred EeccchhhhHHhhccCCCCCceeccccCCC----cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence 999999888899999999999999999853 455554443 457899999965 5677777665 499999986
Q ss_pred CC-cceEEeccCCCCceeeeeEEEEcCCC-CEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEE
Q 009380 446 FE-NTSMIHHNNQTGRWISSFRAIWGWDD-SCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG 523 (536)
Q Consensus 446 ~~-~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las 523 (536)
-. ++.++.++ . -.++.+.|++.+ .+|++++.|+.|.+|+.++++.+..+.. ....+..+.|.|.+...++.
T Consensus 242 assP~k~~~~H-~----~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~~~A~ 314 (1049)
T KOG0307|consen 242 ASSPLKILEGH-Q----RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPSVMAA 314 (1049)
T ss_pred cCCchhhhccc-c----cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcchhhh
Confidence 43 34444221 2 234557898866 8899999999999999999999999986 33455689999998889999
Q ss_pred EccCCeEEEEecC
Q 009380 524 ATGGGQVYVWTSD 536 (536)
Q Consensus 524 gs~Dg~v~iW~~d 536 (536)
++-||.|-||.+.
T Consensus 315 asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 315 ASFDGKISIYSLQ 327 (1049)
T ss_pred heeccceeeeeee
Confidence 9999999999863
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1e-20 Score=170.15 Aligned_cols=283 Identities=14% Similarity=0.167 Sum_probs=213.4
Q ss_pred eeeeecCCCCcccccccccccccccccccceEEecccc-cCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEE
Q 009380 186 FKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLT-LKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWN 264 (536)
Q Consensus 186 v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~-~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd 264 (536)
-.||+|++.|.+|| .+-.+|.|.+||+. .....++..|-.+|++++||+ +|+.|++++.|..|.+||
T Consensus 26 a~~~~Fs~~G~~lA----------vGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~--dgr~LltsS~D~si~lwD 93 (405)
T KOG1273|consen 26 AECCQFSRWGDYLA----------VGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR--DGRKLLTSSRDWSIKLWD 93 (405)
T ss_pred cceEEeccCcceee----------eeccCCcEEEEEccccchhhhhhccccceeEEEecC--CCCEeeeecCCceeEEEe
Confidence 57999999999999 45788999999984 455677889999999999999 999999999999999999
Q ss_pred CCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-CC----CceeEEEecCCCCCE
Q 009380 265 LDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-SE----YAVFSLSQQPNNVNT 339 (536)
Q Consensus 265 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-~~----~~i~~l~~~~~~~~~ 339 (536)
+.. +.+++.+. ...+|+.+.|+|...+.++++-.+..-.+-++...+...+-. .+ ....+..|.+.| ++
T Consensus 94 l~~----gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g-~y 167 (405)
T KOG1273|consen 94 LLK----GSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG-KY 167 (405)
T ss_pred ccC----CCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC-CE
Confidence 998 56666665 568999999999876777777666666666666543322221 11 122233577777 89
Q ss_pred EEEEECCCeEEEEECCCCccceeEeccC-CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC----CCCc-ceee--
Q 009380 340 LYFGEGQGGLNIWDVRSRKSATEWLLHE-ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD----KPEP-MKVL-- 411 (536)
Q Consensus 340 l~~g~~dg~i~i~d~~~~~~~~~~~~h~-~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~----~~~~-~~~~-- 411 (536)
+++|+..|.+.++|..+.+++..++... ..|..|.++..| .+|+.-+.|+.|+.|+++..... ...+ .++.
T Consensus 168 IitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv 246 (405)
T KOG1273|consen 168 IITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV 246 (405)
T ss_pred EEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence 9999999999999999999988887555 789999999877 79999999999999998843211 1111 1111
Q ss_pred cccCceeEEEEccCCCeEEEEeC-CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380 412 SHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 412 ~~~~~v~~l~~sp~g~~l~t~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
-.+..-.+++|+.+|.|++.++. -..++||....+..++.+.... |. ..+.+.|+|-...+++- ..|.|+||..
T Consensus 247 VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k--gE--~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 247 VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK--GE--ELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc--hh--heeecccccceeeeeec-cCCceEEEEe
Confidence 13445578899999999988874 3459999998888877764322 11 22347788887777766 6789999976
Q ss_pred Cc
Q 009380 491 AQ 492 (536)
Q Consensus 491 ~~ 492 (536)
..
T Consensus 322 ~~ 323 (405)
T KOG1273|consen 322 VQ 323 (405)
T ss_pred ec
Confidence 43
No 158
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=1.7e-20 Score=167.37 Aligned_cols=293 Identities=14% Similarity=0.153 Sum_probs=214.8
Q ss_pred ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc----------------cccccccCCceE
Q 009380 175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP----------------ENIARIMPGRIT 238 (536)
Q Consensus 175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~----------------~~~~~~~~~~I~ 238 (536)
.+.+-+.|...|..+++.+....+. ++++.||.+.+||+.... .....+|.-.|.
T Consensus 35 d~d~~r~HgGsvNsL~id~tegrym---------lSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~is 105 (397)
T KOG4283|consen 35 DKDFVRPHGGSVNSLQIDLTEGRYM---------LSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAIS 105 (397)
T ss_pred CcceeccCCCccceeeeccccceEE---------eecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeee
Confidence 3455677999999999988765544 367999999999984322 012234567899
Q ss_pred EEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC--CEEEEEECCCeEEEEECCCCe
Q 009380 239 QMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL--SKIFTSCYDGLIRLMDAEKEV 316 (536)
Q Consensus 239 ~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~~l~s~s~dg~I~vwd~~~~~ 316 (536)
++.|-|. |..++.+++.|.+++|||..+ .+....|. ..+.|.+-+++|-.. .++++|..|-.|++-|+.+|.
T Consensus 106 s~~WyP~-DtGmFtssSFDhtlKVWDtnT----lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 106 SAIWYPI-DTGMFTSSSFDHTLKVWDTNT----LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred eeEEeee-cCceeecccccceEEEeeccc----ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 9999998 667899999999999999998 44444443 346677778877431 578888889999999999998
Q ss_pred EEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC-cccee--------------EeccCCCeEEEEEecCCC
Q 009380 317 FDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR-KSATE--------------WLLHEARINTIDFNPRNP 380 (536)
Q Consensus 317 ~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~--------------~~~h~~~i~~i~~~p~~~ 380 (536)
+.. +.+|.+.|.++.|+|.....|++|+.||.|++||++.. .+... -..|.+.|++++|..++
T Consensus 180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~- 258 (397)
T KOG4283|consen 180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA- 258 (397)
T ss_pred ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-
Confidence 765 45799999999999999889999999999999999854 22222 23577889999999988
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCc---eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC
Q 009380 381 NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRA---VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ 457 (536)
Q Consensus 381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~---v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~ 457 (536)
.++++++.|..+++|+..++.......... .|... -..+. +-+...++---.++.+.++++-.+..+..+...
T Consensus 259 ~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~-~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h-- 334 (397)
T KOG4283|consen 259 RYLASCGTDDRIRVWNMESGRNTLREFGPI-IHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH-- 334 (397)
T ss_pred hhhhhccCccceEEeecccCcccccccccc-cccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc--
Confidence 689999999999999999876322111111 12111 11122 223444555556688888888888777776433
Q ss_pred CCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380 458 TGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 458 ~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
.. .+.++.+.|+=+...+|.+|+.|..|..
T Consensus 335 -~k--~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 335 -LK--RINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred -cc--eeeEEeecCchhhhhccccCCccccccc
Confidence 22 2334677888788999999999999976
No 159
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=1.3e-20 Score=170.09 Aligned_cols=275 Identities=17% Similarity=0.178 Sum_probs=200.0
Q ss_pred eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC----C----CceEEec-cCCCCEEEEEEe-------cCCCCEEEE
Q 009380 237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE----D----NGIYLFR-THLGPISGIVTQ-------QYCLSKIFT 300 (536)
Q Consensus 237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~----~----~~~~~~~-~h~~~V~~l~~~-------~~~~~~l~s 300 (536)
...+.|+| ||.-|++-+.|..+.+|++...... . .....++ .....|...+|- |+. +++++
T Consensus 52 ~kgckWSP--DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t-~l~a~ 128 (406)
T KOG2919|consen 52 LKGCKWSP--DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST-NLFAV 128 (406)
T ss_pred hccceeCC--CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc-ceeee
Confidence 34688999 9999999999999999998642110 0 1111111 123557777775 455 88999
Q ss_pred EECCCeEEEEECCCCeEEEeec---CC---CceeEEEecCCCCCEEEEEECCCeEEEEEC-CCCcc--ceeEe-----cc
Q 009380 301 SCYDGLIRLMDAEKEVFDLVYS---SE---YAVFSLSQQPNNVNTLYFGEGQGGLNIWDV-RSRKS--ATEWL-----LH 366 (536)
Q Consensus 301 ~s~dg~I~vwd~~~~~~~~~~~---~~---~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~-~~~~~--~~~~~-----~h 366 (536)
.+.+.-|.+||.-+|+....+. |. ....+++|+|+| ..|++|.. ..|++||+ |.|.- +.... +.
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccc
Confidence 9999999999999998776553 33 355789999999 67776654 59999999 55542 22222 33
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCC
Q 009380 367 EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVN 445 (536)
Q Consensus 367 ~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~ 445 (536)
.+-|.+++|+|.....++.|+....+-||.-... ..+..+.+|.+.|+.+.|.++|+.|++|. .|..|..||++.
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 6778999999998889999999888888876653 24455558999999999999999999988 477899999986
Q ss_pred C-CcceEEe-ccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc-cccceeccCCceeeeeeeEeecCCCCCEEE
Q 009380 446 F-ENTSMIH-HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLA 522 (536)
Q Consensus 446 ~-~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~-~~~~~~l~~~~~~~~~~~~~~~p~~~~~la 522 (536)
. .++..+. |...+...|. ....|++++|++|+.+|.|++||+.+ +..+..+..+...+ ..+++||.- .++|
T Consensus 283 ~~~pv~~L~rhv~~TNQRI~---FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~v--NgvslnP~m-pila 356 (406)
T KOG2919|consen 283 SRDPVYALERHVGDTNQRIL---FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTV--NGVSLNPIM-PILA 356 (406)
T ss_pred ccchhhhhhhhccCccceEE---EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccc--cceecCccc-ceee
Confidence 4 3444443 3333444333 44578999999999999999999988 65555554433322 468889964 7777
Q ss_pred EEcc
Q 009380 523 GATG 526 (536)
Q Consensus 523 sgs~ 526 (536)
+++.
T Consensus 357 tssG 360 (406)
T KOG2919|consen 357 TSSG 360 (406)
T ss_pred eccC
Confidence 7764
No 160
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.7e-20 Score=173.21 Aligned_cols=294 Identities=16% Similarity=0.184 Sum_probs=217.7
Q ss_pred ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC--CCCceEEe-ccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 230 ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD--EDNGIYLF-RTHLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 230 ~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~--~~~~~~~~-~~h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
...|.+.|+++.|+. ++.+|++|+.|..+++|+++..-. ..+++... ..|...|.|++|...+ .+|++|..+++
T Consensus 52 ~~~H~GCiNAlqFS~--N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~ 128 (609)
T KOG4227|consen 52 VREHTGCINALQFSH--NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWGT 128 (609)
T ss_pred hhhhccccceeeecc--CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-eeEecCCCcce
Confidence 367999999999999 899999999999999999874211 02333322 3466899999999887 99999999999
Q ss_pred EEEEECCCCeEEEeecCCC---ceeEEEecCCCCCEEEEEECCCeEEEEECCCCc-cceeE--eccCCCeEEEEEecCCC
Q 009380 307 IRLMDAEKEVFDLVYSSEY---AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEW--LLHEARINTIDFNPRNP 380 (536)
Q Consensus 307 I~vwd~~~~~~~~~~~~~~---~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~--~~h~~~i~~i~~~p~~~ 380 (536)
|...|+++.+.+.++.+.. .|..+..+|.+ ++|++.+.+|.|.+||.+... .+..+ ........++.|+|..+
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 9999999999888888765 99999999997 899999999999999999755 33222 23456778999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCccee---ecc---cCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc-eEEe
Q 009380 381 NIMATSSTDGTACIWDLRSMATDKPEPMKV---LSH---KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT-SMIH 453 (536)
Q Consensus 381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~---~~~---~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~-~~~~ 453 (536)
.+|++.+..+-+.+||.+.... .++.. .+. ...-.++.|+|+|+.|++.-....-.+||+.+..+. ..+.
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~---~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQAR---PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred eeEEeccccCCCCceeeccccc---hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 9999999999999999998532 11111 111 223367899999999988877777788998764433 3333
Q ss_pred ccCC-CCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc-----------------------cceeccCCceeeeee
Q 009380 454 HNNQ-TGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR-----------------------SVATLQSPYISAIPC 509 (536)
Q Consensus 454 ~~~~-~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~-----------------------~~~~l~~~~~~~~~~ 509 (536)
|+.. .....+.-.++|-.| ..+++|+.+-.|++|.+.... .+..|.+|.. ++.
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS--v~N 361 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS--VPN 361 (609)
T ss_pred CCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc--ccc
Confidence 3331 111222233556544 449999999999999874211 1233444432 234
Q ss_pred eEeecCCCCCEEEEEccCCeEEEEe
Q 009380 510 RFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 510 ~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
.+.|+|+. .+|++.+....++||.
T Consensus 362 QVRF~~H~-~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 362 QVRFSQHN-NLLVSSGVENSFKLWS 385 (609)
T ss_pred ceeecCCc-ceEeccchhhheeccc
Confidence 67788865 8899999999999995
No 161
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=1.6e-20 Score=167.00 Aligned_cols=295 Identities=17% Similarity=0.207 Sum_probs=203.9
Q ss_pred ccceEEecccccCcc----ccccccCCceEEEEEEecCCccEEEEEeCC-------CcEEEEECCCCCCC-----CCceE
Q 009380 213 VGSCVDIGSLTLKPE----NIARIMPGRITQMKFLPCSDVRMVVAGSKL-------GNITFWNLDSQQDE-----DNGIY 276 (536)
Q Consensus 213 ~dg~v~lw~~~~~~~----~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d-------g~v~iwd~~~~~~~-----~~~~~ 276 (536)
.++.|.+-.++.+.. .++.-|.+.|..++-+|. +..+|+++..+ ..+.||.+...... .+++.
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~-d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~ 116 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPF-DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA 116 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCC-CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence 445666666544332 233456889999999996 66777776542 24679998754321 12333
Q ss_pred Eec-cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-E-Ee-----ecCCCceeEEEecCC-CCCEEEEEECCC
Q 009380 277 LFR-THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-D-LV-----YSSEYAVFSLSQQPN-NVNTLYFGEGQG 347 (536)
Q Consensus 277 ~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-~-~~-----~~~~~~i~~l~~~~~-~~~~l~~g~~dg 347 (536)
.+. .+-+.|.|+.|.|++ ..+++.. |..|.+|++..+.. . .+ ..+....++-+|+|. +.+.++ ...|+
T Consensus 117 ~Ldteavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~ 193 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDS 193 (370)
T ss_pred cCCHHHhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCC
Confidence 333 455689999999987 7887776 88899999987643 1 11 124566788899983 224444 56678
Q ss_pred eEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-C
Q 009380 348 GLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-S 425 (536)
Q Consensus 348 ~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~ 425 (536)
++..||+|+.+....+. .|...|..+.|+|...++|++|+.||.|+|||.|+.+ ..+..+.+|...|+++.|+| .
T Consensus 194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---FPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---ccccccCCCceEEEEEEecCcc
Confidence 99999999988876665 7999999999999888899999999999999999864 34555668999999999999 5
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCcee
Q 009380 426 GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYIS 505 (536)
Q Consensus 426 g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~ 505 (536)
.++|++++.|..|.+|..........+........ .++ .|..=++=-+..| .+.++..|..+
T Consensus 271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese---------~e~--------~dseer~kpL~dg-~l~tydehEDS 332 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE---------SED--------EDSEERVKPLQDG-QLETYDEHEDS 332 (370)
T ss_pred ceEEEecCCCceeEEEecccccccccccccccccc---------Ccc--------hhhHHhccccccc-ccccccccccc
Confidence 67899999999999998754332222211110000 000 0111111122333 56677766666
Q ss_pred eeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 506 AIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 506 ~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
+. .++|+..+...+|+-+.||++.|=+
T Consensus 333 VY--~~aWSsadPWiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 333 VY--ALAWSSADPWIFASLSYDGRVIISS 359 (370)
T ss_pred eE--EEeeccCCCeeEEEeccCceEEeec
Confidence 65 6788888888999999999998744
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=6.1e-21 Score=181.06 Aligned_cols=231 Identities=15% Similarity=0.213 Sum_probs=187.1
Q ss_pred ccccceEEecccccCcc---ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380 211 IEVGSCVDIGSLTLKPE---NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISG 287 (536)
Q Consensus 211 ~~~dg~v~lw~~~~~~~---~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~ 287 (536)
.+.|..+++|.-..+.. .+.+...+.-.||+... ...++++|+..+.|+|||+.. ..+.+.+++|...|++
T Consensus 53 ~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s--~S~y~~sgG~~~~Vkiwdl~~----kl~hr~lkdh~stvt~ 126 (673)
T KOG4378|consen 53 MAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS--QSLYEISGGQSGCVKIWDLRA----KLIHRFLKDHQSTVTY 126 (673)
T ss_pred cCCceeEEEecccCCCCccceeeccccchHHHHhhhh--cceeeeccCcCceeeehhhHH----HHHhhhccCCcceeEE
Confidence 34556788887543311 12222333445555554 457999999999999999996 5677788999999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC--CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-
Q 009380 288 IVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE--YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL- 364 (536)
Q Consensus 288 l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~--~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~- 364 (536)
+.++... .+|++++..|.|.|..+.++.....+.+. ..|.-+.|++....+|.+++.+|.|.+||+....++..+.
T Consensus 127 v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~ 205 (673)
T KOG4378|consen 127 VDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE 205 (673)
T ss_pred EEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh
Confidence 9999888 99999999999999999998777666654 4566899999987788899999999999998877766654
Q ss_pred ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380 365 LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 365 ~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~ 444 (536)
.|..+...|||+|.++.+|++.+.|..|.+||.+.. ..........+...++|.++|.+|+.|...|.|..||++
T Consensus 206 ~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-----~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 206 AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-----ASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred hccCCcCcceecCCccceEEEecccceEEEeecccc-----cccceeeecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence 899999999999999999999999999999999963 333444556789999999999999999999999999999
Q ss_pred CCCcceEEe
Q 009380 445 NFENTSMIH 453 (536)
Q Consensus 445 ~~~~~~~~~ 453 (536)
..+......
T Consensus 281 ~~k~Pv~v~ 289 (673)
T KOG4378|consen 281 STKAPVAVR 289 (673)
T ss_pred cCCCCceEe
Confidence 765444443
No 163
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.86 E-value=8.6e-20 Score=185.11 Aligned_cols=272 Identities=19% Similarity=0.266 Sum_probs=200.0
Q ss_pred cccceEEecccccCcc-ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC--CCCceEEeccCCCCEEEE
Q 009380 212 EVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD--EDNGIYLFRTHLGPISGI 288 (536)
Q Consensus 212 ~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~--~~~~~~~~~~h~~~V~~l 288 (536)
..++.+.+|++..... ......+..|+|+.|+|. +..+|+.|..+|+|.+||+..... ....-.....|..+|+.+
T Consensus 219 ~~~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 219 EPDGVLLVWSLKNPNTPELVLESPSEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred cCCceEEEEecCCCCCceEEEecCCceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 3445789999865411 112233789999999997 778999999999999999987543 112223445789999999
Q ss_pred EEecCCC-CEEEEEECCCeEEEEECCCCeE------EE-------eecCCCceeEEEecCCCCCEEEEEECCCeEEEEEC
Q 009380 289 VTQQYCL-SKIFTSCYDGLIRLMDAEKEVF------DL-------VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV 354 (536)
Q Consensus 289 ~~~~~~~-~~l~s~s~dg~I~vwd~~~~~~------~~-------~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~ 354 (536)
.|..+-. .-|++++.||.|..|+++.-.. .. .......++++.|.+..++.+++|+..|.|..-+.
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence 9987541 3499999999999998864211 11 11233578999999999999999999999988443
Q ss_pred CCC--------ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC-
Q 009380 355 RSR--------KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS- 425 (536)
Q Consensus 355 ~~~--------~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~- 425 (536)
... +.+..+..|.++|+++.++|-+..+|++++ |.+++||..... ......+..+...|++++|||.
T Consensus 378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~---~~Pl~~~~~~~~~v~~vaWSptr 453 (555)
T KOG1587|consen 378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI---ASPLLSLDSSPDYVTDVAWSPTR 453 (555)
T ss_pred cCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC---CCcchhhhhccceeeeeEEcCcC
Confidence 322 123355678999999999999988888888 999999997732 2244555567778999999995
Q ss_pred CCeEEEEeCCCcEEEEeCCCCC--cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 426 GSSLATTSFDDTIGIWSGVNFE--NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 426 g~~l~t~s~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
-..|+++..||.|.|||+.... +....... .. ....+.|+++|+.|++|...|.+.+|++...
T Consensus 454 pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~---~~--~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 454 PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC---SP--ALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ceEEEEEcCCCceehhhhhccccCCccccccc---cc--ccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 4678888899999999997543 33332211 11 1223668999999999999999999998643
No 164
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=1.6e-19 Score=167.95 Aligned_cols=291 Identities=15% Similarity=0.168 Sum_probs=207.7
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCC-----CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDED-----NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR 308 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~ 308 (536)
..+|+++.|.++ +.+.|++|+.|..|+||.+......+ ..+..+..|...|+++.|+|+| ++|++|+.+|.|.
T Consensus 13 ~~pv~s~dfq~n-~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKN-SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccC-cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEE
Confidence 578999999994 33499999999999999987654322 2344677899999999999999 9999999999999
Q ss_pred EEECC--------C------C---eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeE
Q 009380 309 LMDAE--------K------E---VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARIN 371 (536)
Q Consensus 309 vwd~~--------~------~---~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~ 371 (536)
+|-.. + . ......+|...|..++|+|++ +++++++.|..+++||+..|+.+..+..|...+.
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 99866 2 1 112344688999999999998 8999999999999999999999999999999999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC----------------CCcceee---cccCceeEEEEccCCCeEEEE
Q 009380 372 TIDFNPRNPNIMATSSTDGTACIWDLRSMATDK----------------PEPMKVL---SHKRAVHSAYFSPSGSSLATT 432 (536)
Q Consensus 372 ~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~----------------~~~~~~~---~~~~~v~~l~~sp~g~~l~t~ 432 (536)
.++|.|.+ +++++-+.|...+++++....... .....++ ....-...++|+|+|.++++.
T Consensus 170 gvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP 248 (434)
T KOG1009|consen 170 GVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP 248 (434)
T ss_pred eeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc
Confidence 99999987 789998888877777665422100 0111111 012234568899999988876
Q ss_pred eC----CC-----cEEEEeCCCCCcceEEeccCCCCceeeeeEE---------------EE-cCCCCEEEEEcCCCcEEE
Q 009380 433 SF----DD-----TIGIWSGVNFENTSMIHHNNQTGRWISSFRA---------------IW-GWDDSCVFIGNMTRTVEV 487 (536)
Q Consensus 433 s~----dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-s~~g~~l~~gs~dg~I~v 487 (536)
.. .+ +.++|+-...+... .+....+.....+++ .| -|.+-.+++++. +.|+|
T Consensus 249 ag~~~~g~~~~~n~tYvfsrk~l~rP~--~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyv 325 (434)
T KOG1009|consen 249 AGLFKVGGGVFRNTSYVFSRKDLKRPA--ARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYV 325 (434)
T ss_pred cceeeeCCceeeceeEeeccccccCce--eecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEE
Confidence 42 22 23555433221111 111111111111110 01 123334556654 57999
Q ss_pred EcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380 488 ISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533 (536)
Q Consensus 488 ~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW 533 (536)
||.++..++..+.+-|-..+ +.++|++ +|..|+..+.||...+-
T Consensus 326 ydtq~~~P~~~v~nihy~~i-TDiaws~-dg~~l~vSS~DGyCS~v 369 (434)
T KOG1009|consen 326 YDTQTLEPLAVVDNIHYSAI-TDIAWSD-DGSVLLVSSTDGFCSLV 369 (434)
T ss_pred eccccccceEEEeeeeeeee-cceeecC-CCcEEEEeccCCceEEE
Confidence 99999999988888777776 6899998 67999999999986653
No 165
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.3e-20 Score=177.17 Aligned_cols=299 Identities=17% Similarity=0.224 Sum_probs=229.6
Q ss_pred cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC-CCEEEEEECCC
Q 009380 227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC-LSKIFTSCYDG 305 (536)
Q Consensus 227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~s~s~dg 305 (536)
...+..|.+.|..|.|.. .|..|++|+.|..|.+||.... ...+.-..+|...|....|.|.. ...+++++.||
T Consensus 135 ~~kL~~H~GcVntV~FN~--~Gd~l~SgSDD~~vv~WdW~~~---~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQ--RGDVLASGSDDLQVVVWDWVSG---SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred hhcccCCCCccceeeecc--cCceeeccCccceEEeehhhcc---CcccccccccccchhhhhccCCCCCcCceeccccC
Confidence 344678999999999999 9999999999999999999873 23344456899999998998863 25799999999
Q ss_pred eEEEEECCC-Ce---EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe---ccCC---CeEEEEE
Q 009380 306 LIRLMDAEK-EV---FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL---LHEA---RINTIDF 375 (536)
Q Consensus 306 ~I~vwd~~~-~~---~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---~h~~---~i~~i~~ 375 (536)
.+++=.+.. +. ...+..|.++|.-++.-|+.++.|++++.|+.+.-+|++++.+...+. .+.. ..++|+.
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 999987653 32 345667999999999999999999999999999999999876644332 2333 5789999
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCCCCCCC--CCcceee------cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 009380 376 NPRNPNIMATSSTDGTACIWDLRSMATDK--PEPMKVL------SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE 447 (536)
Q Consensus 376 ~p~~~~~l~s~s~dg~i~iwdl~~~~~~~--~~~~~~~------~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~ 447 (536)
+|.+.+.+++|+.|..+++||.+...... ..+..+. .....|++++|+.++.-|+++-.|-.|++|.-..+.
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 99998999999999999999998754220 0111111 234579999999888778888888889999543211
Q ss_pred c------------ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecC
Q 009380 448 N------------TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHP 515 (536)
Q Consensus 448 ~------------~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p 515 (536)
- .............+... --|.|...|+++|+.-|.|.||+-.+++.+.-+.+.+. ++ .++..||
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgV-NFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VV-NCLEpHP 446 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGV-NFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VV-NCLEPHP 446 (559)
T ss_pred CCCCCCCcchhhccchhhccccccccccee-eeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eE-eccCCCC
Confidence 1 11111111111112222 12789999999999999999999999999999998766 44 5689999
Q ss_pred CCCCEEEEEccCCeEEEEe
Q 009380 516 HQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 516 ~~~~~lasgs~Dg~v~iW~ 534 (536)
.. .+||+.|-|..|+||.
T Consensus 447 ~~-PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 447 HL-PVLASSGIDHDVKIWT 464 (559)
T ss_pred CC-chhhccCCccceeeec
Confidence 87 8999999999999995
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=3.1e-19 Score=161.28 Aligned_cols=274 Identities=13% Similarity=0.157 Sum_probs=196.9
Q ss_pred ceeeeecCCCCcccccccccccccccccccceEEecccccCcc-------c-------cccccCCceEEEEEEec-----
Q 009380 185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-------N-------IARIMPGRITQMKFLPC----- 245 (536)
Q Consensus 185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-------~-------~~~~~~~~I~~v~~~p~----- 245 (536)
-...|.++|||.-+.. ...|.++++|++..+.. . +.-...+.|+..+|-+.
T Consensus 51 f~kgckWSPDGSciL~----------~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~q 120 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILS----------LSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQ 120 (406)
T ss_pred hhccceeCCCCceEEe----------ecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCC
Confidence 3456899999987764 46778999998733211 0 11112567888888631
Q ss_pred CCccEEEEEeCCCcEEEEECCCCCCCCCceEEec--cCCC---CEEEEEEecCCCCEEEEEECCCeEEEEEC-CCCeEEE
Q 009380 246 SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR--THLG---PISGIVTQQYCLSKIFTSCYDGLIRLMDA-EKEVFDL 319 (536)
Q Consensus 246 ~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~--~h~~---~V~~l~~~~~~~~~l~s~s~dg~I~vwd~-~~~~~~~ 319 (536)
.+..++++.+.+.-|.+||.-+ ++....+. .|.. ...+++|+||| .+|++| +...|+++|+ +.|....
T Consensus 121 P~t~l~a~ssr~~PIh~wdaft----G~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfaG-ykrcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFT----GKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFAG-YKRCIRVFDTSRPGRDCP 194 (406)
T ss_pred CccceeeeccccCceeeeeccc----cccccchhhhhhHHhhhhheeEEecCCC-CeEeec-ccceEEEeeccCCCCCCc
Confidence 2678999999999999999998 44444433 3433 34689999999 777765 5788999999 4443221
Q ss_pred --------eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe-CCC
Q 009380 320 --------VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS-TDG 390 (536)
Q Consensus 320 --------~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s-~dg 390 (536)
.++..+-|.+++|+|....++++|+....+-||.-..+.++..+.+|.+.|+.++|+++|. .|.+|+ .|-
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn-~lfsGaRk~d 273 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN-KLFSGARKDD 273 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC-eecccccCCC
Confidence 2234678899999999988999999999999999888999999999999999999999995 666665 477
Q ss_pred cEEEEeCCCCCCCCCCcceeecccC-ceeEEE--EccCCCeEEEEeCCCcEEEEeCCC-CCcceEEeccCCCCceeeeeE
Q 009380 391 TACIWDLRSMATDKPEPMKVLSHKR-AVHSAY--FSPSGSSLATTSFDDTIGIWSGVN-FENTSMIHHNNQTGRWISSFR 466 (536)
Q Consensus 391 ~i~iwdl~~~~~~~~~~~~~~~~~~-~v~~l~--~sp~g~~l~t~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~ 466 (536)
.|-.||+|... ..+..+..|.. .-..|. ..|++++|++|+.||.|++||+.+ +..+..+..... ++-.
T Consensus 274 kIl~WDiR~~~---~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd-----~vNg 345 (406)
T KOG2919|consen 274 KILCWDIRYSR---DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD-----TVNG 345 (406)
T ss_pred eEEEEeehhcc---chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc-----cccc
Confidence 89999999853 23444445554 333444 457899999999999999999987 443444432221 1222
Q ss_pred EEEcCCCCEEEEEcCCC
Q 009380 467 AIWGWDDSCVFIGNMTR 483 (536)
Q Consensus 467 ~~~s~~g~~l~~gs~dg 483 (536)
++++|--.++++++..+
T Consensus 346 vslnP~mpilatssGqr 362 (406)
T KOG2919|consen 346 VSLNPIMPILATSSGQR 362 (406)
T ss_pred eecCcccceeeeccCce
Confidence 56778777777777654
No 167
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=1.3e-17 Score=169.52 Aligned_cols=330 Identities=20% Similarity=0.274 Sum_probs=244.2
Q ss_pred eecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc--cccccccC-CceEEEEE-EecCCcc-EEE
Q 009380 178 VIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP--ENIARIMP-GRITQMKF-LPCSDVR-MVV 252 (536)
Q Consensus 178 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~--~~~~~~~~-~~I~~v~~-~p~~~~~-~l~ 252 (536)
.+.+|.+.+..+.+.+.+..+... +.++.+.+|+..... ......+. ..+..+.+ ++ ++. +++
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~----------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 127 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSG----------SSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP--DGNSILL 127 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEe----------cCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECC--CcceEEe
Confidence 567899999999999999988844 478899999986553 22233323 37888888 56 776 555
Q ss_pred EEeC-CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC-CCeEEEEECCCCeEE-EeecCCCceeE
Q 009380 253 AGSK-LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY-DGLIRLMDAEKEVFD-LVYSSEYAVFS 329 (536)
Q Consensus 253 tg~~-dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~-dg~I~vwd~~~~~~~-~~~~~~~~i~~ 329 (536)
..+. |+.+.+|+.... ......+..|...|..+.|+|++ ..+++++. |+.+++|++..+... ....|...|.+
T Consensus 128 ~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 128 ASSSLDGTVKLWDLSTP---GKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203 (466)
T ss_pred ccCCCCccEEEEEecCC---CeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEE
Confidence 5444 899999999851 36778889999999999999998 78888885 999999999975544 44457899999
Q ss_pred EEecCCCCCEEEEEECCCeEEEEECCCCccce-eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc
Q 009380 330 LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSAT-EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM 408 (536)
Q Consensus 330 l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~-~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~ 408 (536)
++|+|++...+++++.|+.|.+||...+..+. .+..|.... ...|+|++ .++++++.|+.+++||++.... ...
T Consensus 204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~---~~~ 278 (466)
T COG2319 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS---LLR 278 (466)
T ss_pred EEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc---EEE
Confidence 99998874255555899999999998777777 677888775 44899987 7888999999999999997542 122
Q ss_pred eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE-cCCCcEEE
Q 009380 409 KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG-NMTRTVEV 487 (536)
Q Consensus 409 ~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g-s~dg~I~v 487 (536)
....|...+.++.|+|++..+++++.|+.+.+||........... .......+.. +.|.+++..++.+ ..|+.+.+
T Consensus 279 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~ 355 (466)
T COG2319 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSS--LSFSPDGSLLVSGGSDDGTIRL 355 (466)
T ss_pred EEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEE--EEECCCCCEEEEeecCCCcEEe
Confidence 225788999999999988888889999889999887776555543 1111112333 4453443555555 67889999
Q ss_pred EcCCccccceeccCCceeeeeeeEeecCCCCCEEEE-EccCCeEEEEecC
Q 009380 488 ISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG-ATGGGQVYVWTSD 536 (536)
Q Consensus 488 ~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las-gs~Dg~v~iW~~d 536 (536)
|+............... ...+.+.+ + ..+.+ +..++.+.+|+..
T Consensus 356 ~~~~~~~~~~~~~~~~~---~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 400 (466)
T COG2319 356 WDLRTGKPLKTLEGHSN---VLSVSFSP-D-GRVVSSGSTDGTVRLWDLS 400 (466)
T ss_pred eecCCCceeEEecCCce---EEEEEECC-C-CCEEEEecCCCceEEEecc
Confidence 99988763333322221 24567777 6 55555 8999999999863
No 168
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.9e-20 Score=180.80 Aligned_cols=261 Identities=16% Similarity=0.161 Sum_probs=203.3
Q ss_pred cccccccceecccccceeeeecCCCCcccccccccccccccccccceEEeccc---------ccCccccccccCCceEEE
Q 009380 170 CKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSL---------TLKPENIARIMPGRITQM 240 (536)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~---------~~~~~~~~~~~~~~I~~v 240 (536)
.+..+.+.++..|.+++..+.|.+....+. ++..+|.|.||++ ...|...++.|.++|.|+
T Consensus 281 ~k~w~ik~tl~s~~d~ir~l~~~~sep~li----------t~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v 350 (577)
T KOG0642|consen 281 TKKWNIKFTLRSHDDCIRALAFHPSEPVLI----------TASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCV 350 (577)
T ss_pred heecceeeeeecchhhhhhhhcCCCCCeEE----------EeccccchhhhhhcccCCccccceeeeEEEecccCceEEE
Confidence 445788889999999999999999999888 4578899999998 223445568899999999
Q ss_pred EEEecCCccEEEEEeCCCcEEEEECCCCCC------CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380 241 KFLPCSDVRMVVAGSKLGNITFWNLDSQQD------EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK 314 (536)
Q Consensus 241 ~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~------~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~ 314 (536)
++.+ ++..+.+|+.||+|+.|++..... .......+.||++.|+.+++++.. ..|++|+.||+++.|+...
T Consensus 351 ~v~~--n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 351 VVPS--NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred EecC--CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCC
Confidence 9999 999999999999999997753211 123456789999999999999987 8899999999999999887
Q ss_pred CeEEEeec---CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec-------cCCCeEEEEEecCCCCEEE
Q 009380 315 EVFDLVYS---SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL-------HEARINTIDFNPRNPNIMA 384 (536)
Q Consensus 315 ~~~~~~~~---~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-------h~~~i~~i~~~p~~~~~l~ 384 (536)
... ..++ ..+..+++++-...+.+.++...-+.-.++++.....+..+.. ....++-|.++|.+ .+.+
T Consensus 428 ~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~ 505 (577)
T KOG0642|consen 428 ESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITF 505 (577)
T ss_pred cCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeE
Confidence 665 2222 2345566777655433444444444445555555444444331 12457888999977 6899
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc
Q 009380 385 TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT 449 (536)
Q Consensus 385 s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~ 449 (536)
++..|+.|+++|..++. .......|...++++++.|+|.+|++++.|+.+++|.+....+.
T Consensus 506 ~~hed~~Ir~~dn~~~~----~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 506 TAHEDRSIRFFDNKTGK----ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ecccCCceecccccccc----cchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 99999999999999865 66777789999999999999999999999999999998654443
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=4.1e-19 Score=164.46 Aligned_cols=213 Identities=17% Similarity=0.229 Sum_probs=169.5
Q ss_pred CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC--------eEEEeecCCCceeEEEecCCCCCEEEEEE
Q 009380 273 NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE--------VFDLVYSSEYAVFSLSQQPNNVNTLYFGE 344 (536)
Q Consensus 273 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~--------~~~~~~~~~~~i~~l~~~~~~~~~l~~g~ 344 (536)
...-.+.+|+++|..++|+|.+.+.|+|||.|.+|.||.+..+ -...+.+|...|--++|+|...+.|++++
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 4455678999999999999998789999999999999998653 24567789999999999999999999999
Q ss_pred CCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC-ceeEEEEc
Q 009380 345 GQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR-AVHSAYFS 423 (536)
Q Consensus 345 ~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~-~v~~l~~s 423 (536)
.|.+|.+||+.+++.+.++. |.+.|.+++|+.+| .+|+|.+.|..|+|||.++++ .+..-..|.+ .-..+.|-
T Consensus 152 ~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~----~v~e~~~heG~k~~Raifl 225 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGT----VVSEGVAHEGAKPARAIFL 225 (472)
T ss_pred CCceEEEEeccCCceeeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCc----EeeecccccCCCcceeEEe
Confidence 99999999999999988888 99999999999988 699999999999999999974 2222335544 44567788
Q ss_pred cCCCeEEEEe----CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEE-EEEcCCCcEEEEcCCcccc
Q 009380 424 PSGSSLATTS----FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCV-FIGNMTRTVEVISPAQRRS 495 (536)
Q Consensus 424 p~g~~l~t~s----~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~~gs~dg~I~v~d~~~~~~ 495 (536)
.+|. |+|.+ .+.++.+||..+.+....+......... +-.-|.+|..+| ++|-.|+.|+.|.+....+
T Consensus 226 ~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGv---l~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 226 ASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGV---LLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ccCc-eeeeccccccccceeccCcccccCcceeEEeccCCce---EEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 8888 55544 3678999999887655444322222211 225578887774 5677799999999987653
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=2.6e-19 Score=165.74 Aligned_cols=214 Identities=13% Similarity=0.190 Sum_probs=178.1
Q ss_pred cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC---CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC
Q 009380 229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD---EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG 305 (536)
Q Consensus 229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg 305 (536)
...+|.++|..++|+|. +...||+|+.|.+|.||++..... ....+..+.+|...|.-++|+|...+.|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~Pf-nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPF-NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCcc-CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 45789999999999997 557899999999999999976432 13567789999999999999999889999999999
Q ss_pred eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCC-eEEEEEecCCCCEEE
Q 009380 306 LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEAR-INTIDFNPRNPNIMA 384 (536)
Q Consensus 306 ~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~-i~~i~~~p~~~~~l~ 384 (536)
+|.+||+.++.......|...|++++|+.+| .+|++.+.|..|+|||.++++.+..-.+|.+. -..+-|..++ .++.
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g-~i~t 232 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG-KIFT 232 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC-ceee
Confidence 9999999999887778899999999999999 89999999999999999999998888778753 3445666666 4555
Q ss_pred EEe---CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCC
Q 009380 385 TSS---TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFE 447 (536)
Q Consensus 385 s~s---~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~ 447 (536)
||- .++.+-+||..+.+ .+...........|.---|+|+.+.++.++ .|+.|+.|.+.+..
T Consensus 233 TGfsr~seRq~aLwdp~nl~--eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLE--EPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eccccccccceeccCccccc--CcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 553 36889999998865 234444556778888888999888777666 69999999987654
No 171
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=3.1e-17 Score=166.81 Aligned_cols=303 Identities=23% Similarity=0.343 Sum_probs=226.6
Q ss_pred ccccceEEeccccc--CccccccccCCceEEEEEEecCCccEEEEEeC-CCcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380 211 IEVGSCVDIGSLTL--KPENIARIMPGRITQMKFLPCSDVRMVVAGSK-LGNITFWNLDSQQDEDNGIYLFRTHLGPISG 287 (536)
Q Consensus 211 ~~~dg~v~lw~~~~--~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~ 287 (536)
...++.+.+|+... ........|...|..+.|+| ++.++++++. ++.+++|++.. ...+..+.+|...|.+
T Consensus 130 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP--DGKLLASGSSLDGTIKLWDLRT----GKPLSTLAGHTDPVSS 203 (466)
T ss_pred CCCCccEEEEEecCCCeEEEEEecCcccEEEEEECC--CCCEEEecCCCCCceEEEEcCC----CceEEeeccCCCceEE
Confidence 45588999999864 55666788999999999999 8888888885 99999999997 5778888889999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEECCCCeEEE--eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEe
Q 009380 288 IVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL--VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWL 364 (536)
Q Consensus 288 l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~--~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~ 364 (536)
++|+|++...+++++.|+.|++||...+.... ...|.... ...|++++ ..+++++.|+.+++||++.... +..+.
T Consensus 204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 281 (466)
T COG2319 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLS 281 (466)
T ss_pred EEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEe
Confidence 99999883256666999999999988665554 44555554 33899998 7888999999999999997665 44446
Q ss_pred ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee--ecccCceeEEEEccCCCeEEEE-eCCCcEEEE
Q 009380 365 LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV--LSHKRAVHSAYFSPSGSSLATT-SFDDTIGIW 441 (536)
Q Consensus 365 ~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~--~~~~~~v~~l~~sp~g~~l~t~-s~dg~I~iw 441 (536)
.|...|.++.|+|++ ..+++++.|+.+.+||+.... ..... ..|...+..+.|.+++..++.+ ..|+.+.+|
T Consensus 282 ~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 356 (466)
T COG2319 282 GHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGK----LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356 (466)
T ss_pred cCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCc----eEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEee
Confidence 789999999999966 566668888999999888753 22223 3677789999994343556666 688899999
Q ss_pred eCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEE-EcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCE
Q 009380 442 SGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFI-GNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGT 520 (536)
Q Consensus 442 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~-gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~ 520 (536)
++........... ... ...+.+.+ ...++. +..++.+.+|+................. ....+.+ ++..
T Consensus 357 ~~~~~~~~~~~~~--~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~ 426 (466)
T COG2319 357 DLRTGKPLKTLEG--HSN----VLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRV--TSLDFSP-DGKS 426 (466)
T ss_pred ecCCCceeEEecC--Cce----EEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcE--EEEEECC-CCcE
Confidence 9987762222211 111 22355666 433443 6888999999999887776665543222 2345555 4578
Q ss_pred EEEEccCCeEEEEecC
Q 009380 521 LAGATGGGQVYVWTSD 536 (536)
Q Consensus 521 lasgs~Dg~v~iW~~d 536 (536)
+++++.++.+.+|++.
T Consensus 427 ~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 427 LASGSSDNTIRLWDLK 442 (466)
T ss_pred EEEecCCCcEEEEecc
Confidence 8889999999999863
No 172
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=2.2e-17 Score=152.17 Aligned_cols=235 Identities=17% Similarity=0.176 Sum_probs=180.5
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC--eEEEEECC
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG--LIRLMDAE 313 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg--~I~vwd~~ 313 (536)
.|..+.|.. +...|..|+.|| .++|+.... ............|..+-|+. .+++..+.+. .++++++.
T Consensus 7 ti~~~~~Nq--d~~~lsvGs~~G-yk~~~~~~~----~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 7 TINFIGFNQ--DSTLLSVGSKDG-YKIFSCSPF----EKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred ceeeeeecc--ceeEEEccCCCc-eeEEecCch----HHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcc
Confidence 466667887 889999999987 578887752 22222222334466666765 5666666554 48999999
Q ss_pred CCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe---ccCCCeEEEEEecCCCCEEEEE-e-C
Q 009380 314 KEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL---LHEARINTIDFNPRNPNIMATS-S-T 388 (536)
Q Consensus 314 ~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---~h~~~i~~i~~~p~~~~~l~s~-s-~ 388 (536)
++..+.-......|.++.++.+ .|++.-.+ .|+|||+++.+.++++. .+...+.++++++.+ .+++-- + .
T Consensus 77 k~~~ICe~~fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t 151 (391)
T KOG2110|consen 77 KKTTICEIFFPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTT 151 (391)
T ss_pred cCceEEEEecCCceEEEEEccc---eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCC-ceEEecCCCC
Confidence 8877777777789999999864 46666655 59999999999988776 355567777777755 455543 2 3
Q ss_pred CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCc-EEEEeCCCCCcceEEeccCCCCceeeeeEE
Q 009380 389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDT-IGIWSGVNFENTSMIHHNNQTGRWISSFRA 467 (536)
Q Consensus 389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (536)
.|.|.+||+.+.+ ....+..|.+.+.+++|+++|.+|||++..|+ ||||.+.+++.+..++.... ++.+..+
T Consensus 152 ~GdV~l~d~~nl~----~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---~~~IySL 224 (391)
T KOG2110|consen 152 SGDVVLFDTINLQ----PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---PVSIYSL 224 (391)
T ss_pred CceEEEEEcccce----eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---eeEEEEE
Confidence 5899999999864 45566689999999999999999999999998 89999999999999875433 5667779
Q ss_pred EEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380 468 IWGWDDSCVFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 468 ~~s~~g~~l~~gs~dg~I~v~d~~~ 492 (536)
+|++++++|++.+..++|+||.+..
T Consensus 225 ~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 225 SFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EECCCCCeEEEecCCCeEEEEEecc
Confidence 9999999999999999999998753
No 173
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.83 E-value=9.9e-19 Score=155.88 Aligned_cols=250 Identities=16% Similarity=0.182 Sum_probs=188.9
Q ss_pred cccccceeeeecCCCCcccc-cccccccccccccccceEEecccccCccc----------cccccCCceEEEEEEecCCc
Q 009380 180 KDEFNGFKTCKDEGLGVGSC-DLIKGVVKTEKIEVGSCVDIGSLTLKPEN----------IARIMPGRITQMKFLPCSDV 248 (536)
Q Consensus 180 ~~~~~~v~~~~~s~~~~~l~-~~~~~~~~~~~~~~dg~v~lw~~~~~~~~----------~~~~~~~~I~~v~~~p~~~~ 248 (536)
-.|.-.+..+.|.|+.+.+. .+ -...+-.++||.+..+... ....+..++++..|+.. +-
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdl--------LATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~-dp 163 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDL--------LATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV-DP 163 (364)
T ss_pred CCCCCCccceEecCCccccCcch--------hhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccC-Cc
Confidence 45777788888888885222 11 1122337888887532211 12334779999999875 77
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE-Eeec--C-C
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD-LVYS--S-E 324 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~-~~~~--~-~ 324 (536)
++|.+++-|-+..|||++.+.. +.....+..|...|..|+|...+.+.|++++.||+||+||++...-. .++. . .
T Consensus 164 ~~igtSSiDTTCTiWdie~~~~-~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~ 242 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETGVS-GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPS 242 (364)
T ss_pred ceeEeecccCeEEEEEEeeccc-cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCC
Confidence 8999999999999999997421 34566788999999999999988789999999999999999875433 2332 2 4
Q ss_pred CceeEEEecCCCCCEEEEEECC-CeEEEEECCCCc-cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009380 325 YAVFSLSQQPNNVNTLYFGEGQ-GGLNIWDVRSRK-SATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT 402 (536)
Q Consensus 325 ~~i~~l~~~~~~~~~l~~g~~d-g~i~i~d~~~~~-~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~ 402 (536)
.+..-++|++.+++++++-..| ..|.|.|+|... ++..+++|.+.|+.|+|.|.....++|++.|..+-|||+...-.
T Consensus 243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred CcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 6889999999999998876544 579999999864 48899999999999999999989999999999999999987543
Q ss_pred -CCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEE
Q 009380 403 -DKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGI 440 (536)
Q Consensus 403 -~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~i 440 (536)
....++..+...+.|+.+.|++ .+..|+.+. ++.+.|
T Consensus 323 ~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 323 ENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred cCCCCchhhhhccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 1223333445778999999998 556666655 444444
No 174
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.83 E-value=6.8e-19 Score=156.94 Aligned_cols=245 Identities=17% Similarity=0.227 Sum_probs=181.5
Q ss_pred cccCCceEEEEEEecCCc---cEEEEEeCCCcEEEEECCCCCCCCCceEE-----eccCCCCEEEEEEecCCCCEEEEEE
Q 009380 231 RIMPGRITQMKFLPCSDV---RMVVAGSKLGNITFWNLDSQQDEDNGIYL-----FRTHLGPISGIVTQQYCLSKIFTSC 302 (536)
Q Consensus 231 ~~~~~~I~~v~~~p~~~~---~~l~tg~~dg~v~iwd~~~~~~~~~~~~~-----~~~h~~~V~~l~~~~~~~~~l~s~s 302 (536)
..|+-+++.+.|.|...| ++||+.+. .+++|.+...+....+... -..+..++++..|+.-.+++|.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 357889999999994332 45666553 8999999853321111111 2345678999999998889999999
Q ss_pred CCCeEEEEECCCCe----EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe---ccCCCeEEEEE
Q 009380 303 YDGLIRLMDAEKEV----FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL---LHEARINTIDF 375 (536)
Q Consensus 303 ~dg~I~vwd~~~~~----~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---~h~~~i~~i~~ 375 (536)
-|-+..|||++++. ...+..|+..|..++|...+.++|++.+.||.|++||+|..+....+- ....+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999872 356778999999999999888899999999999999999876533332 22567889999
Q ss_pred ecCCCCEEEEEeCC-CcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380 376 NPRNPNIMATSSTD-GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIH 453 (536)
Q Consensus 376 ~p~~~~~l~s~s~d-g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~ 453 (536)
++.+++++|+-..| ..|.|.|+|... ..+..+.+|.+.|+.++|.| ....|++++.|..+.|||+...-......
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~---tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d 327 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPC---TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED 327 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCC---cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC
Confidence 99999999987765 569999999853 34556669999999999999 66789999999999999997543210000
Q ss_pred --ccCCCCceeeeeEEEEcC-CCCEEEEEcCC
Q 009380 454 --HNNQTGRWISSFRAIWGW-DDSCVFIGNMT 482 (536)
Q Consensus 454 --~~~~~~~~~~~~~~~~s~-~g~~l~~gs~d 482 (536)
..-..+..+.. +.|++ .+..|+++..+
T Consensus 328 Pilay~a~~EVNq--i~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 328 PILAYTAGGEVNQ--IQWSSSQPDWIAICFGK 357 (364)
T ss_pred chhhhhccceeee--eeecccCCCEEEEEecC
Confidence 00011222333 66875 45677776543
No 175
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=7.4e-19 Score=172.36 Aligned_cols=273 Identities=12% Similarity=0.182 Sum_probs=204.3
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE 315 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~ 315 (536)
.|+.++|-| ||..|+.+.. ..+.+||..+ +..+.++++|...|.|++|+.+| ..+++|+.|..|.+|+..-.
T Consensus 14 ci~d~afkP--DGsqL~lAAg-~rlliyD~nd----G~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 14 CINDIAFKP--DGTQLILAAG-SRLLVYDTSD----GTLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred chheeEECC--CCceEEEecC-CEEEEEeCCC----cccccccccccceEEEEEEccCC-ceeccCCCceeEEEeccccc
Confidence 799999999 8877766553 4799999998 78899999999999999999999 99999999999999986543
Q ss_pred eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380 316 VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIW 395 (536)
Q Consensus 316 ~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw 395 (536)
- ...+.|...|.|+.|+|-. +.|++++.+ ..-+|...... +...+ ....|.+.+|..|| ++|+.|-.+|+|.|-
T Consensus 86 G-~LkYSH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsWtnDG-qylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 86 G-ILKYSHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSWTNDG-QYLALGMFNGTISIR 159 (1081)
T ss_pred c-eeeeccCCeeeEeecCchH-HHhhhcchh-hccccChhhhh-HHhhh-hheeEEEeeecCCC-cEEEEeccCceEEee
Confidence 2 3456799999999999987 788888776 67888765433 22222 35678899999988 799999999999987
Q ss_pred eCCCCCCCCCCccee-ecccCceeEEEEccCC-----CeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEE
Q 009380 396 DLRSMATDKPEPMKV-LSHKRAVHSAYFSPSG-----SSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIW 469 (536)
Q Consensus 396 dl~~~~~~~~~~~~~-~~~~~~v~~l~~sp~g-----~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (536)
+-... ....+.. -+.+.+|++++|+|+. ..+++.....++.+|.+.. +.+..-+.-. ....++.+
T Consensus 160 Nk~gE---ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~-----FdP~CisY 230 (1081)
T KOG1538|consen 160 NKNGE---EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALN-----FDPCCISY 230 (1081)
T ss_pred cCCCC---cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCC-----CCchhhee
Confidence 53321 1111111 2478899999999953 4788888888888887743 2221111101 11223557
Q ss_pred cCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 470 GWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 470 s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
-++|.|++.|+.|+.+.+|-..+ -.+.++.. .......+..+| +++.++.|+.||+|-.|++
T Consensus 231 f~NGEy~LiGGsdk~L~~fTR~G-vrLGTvg~--~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 231 FTNGEYILLGGSDKQLSLFTRDG-VRLGTVGE--QDSWIWTVQAKP-NSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ccCCcEEEEccCCCceEEEeecC-eEEeeccc--cceeEEEEEEcc-CCceEEEEEccCeeehhhh
Confidence 78999999999999999997544 35555543 223335788899 5699999999999988875
No 176
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=4.2e-19 Score=156.23 Aligned_cols=290 Identities=17% Similarity=0.149 Sum_probs=198.6
Q ss_pred CccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEEC
Q 009380 225 KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCY 303 (536)
Q Consensus 225 ~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~ 303 (536)
+|..+++.|.+.|+++.|-. ++ +|.+|..-|.|.+|++.+ ......+. .|+..|+.+...|+ ..|.+-+.
T Consensus 5 dP~fvLRp~~~~v~s~~fqa--~~-rL~sg~~~G~V~~w~lqt----~r~~~~~r~~g~~~it~lq~~p~--d~l~tqgR 75 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQA--NE-RLMSGLSVGIVKMWVLQT----ERDLPLIRLFGRLFITNLQSIPN--DSLDTQGR 75 (323)
T ss_pred CCeeEeccccchheehhhcc--ch-hhhcccccceEEEEEeec----CccchhhhhhccceeeceeecCC--cchhhcCC
Confidence 45566789999999999987 43 599999999999999998 56666677 57788999999887 57899999
Q ss_pred CCeEEEEECCCCeEEEeecCCCceeEEEecCCC-----CC---EEEEEECCC-eEEEEECCCCccceeEe----ccCCCe
Q 009380 304 DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNN-----VN---TLYFGEGQG-GLNIWDVRSRKSATEWL----LHEARI 370 (536)
Q Consensus 304 dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~-----~~---~l~~g~~dg-~i~i~d~~~~~~~~~~~----~h~~~i 370 (536)
|+.+.+|++..+.+..+.. -.+.++-|.+.. .+ .++.-+... .+.+-|......+.... +..+.+
T Consensus 76 d~~L~lw~ia~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv 153 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV 153 (323)
T ss_pred CceEEEEEccCcceEEEee--eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence 9999999998866544332 334444444321 11 111111100 11222221111111111 233556
Q ss_pred EEEEEecC-CC-CEEEEEeCCCcEEEEeCCCCCC------CCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEe
Q 009380 371 NTIDFNPR-NP-NIMATSSTDGTACIWDLRSMAT------DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 442 (536)
Q Consensus 371 ~~i~~~p~-~~-~~l~s~s~dg~i~iwdl~~~~~------~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd 442 (536)
.|..+.-+ +. -++++|-++|.+.+||+.++.. ..........|..+|.++.|.+.-..=++++.+..+..|+
T Consensus 154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence 66664322 22 3567777899999999998531 1122333446999999999998666677888888999999
Q ss_pred CCCC--Ccc----eEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCC
Q 009380 443 GVNF--ENT----SMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPH 516 (536)
Q Consensus 443 ~~~~--~~~----~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~ 516 (536)
+... ... .++.+....+ +..-||++.+++++.|+.|+||+.++.++++.+.-|...+ .+++|+|
T Consensus 234 l~~s~gslq~~~e~~lknpGv~g-------vrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagv--n~vAfsp- 303 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSG-------VRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGV--NAVAFSP- 303 (323)
T ss_pred eccccCcccccceEEecCCCccc-------eEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcce--eEEEeCC-
Confidence 8643 111 1222222222 3346899999999999999999999999999998876443 4789999
Q ss_pred CCCEEEEEccCCeEEEEec
Q 009380 517 QVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 517 ~~~~lasgs~Dg~v~iW~~ 535 (536)
+.+.+|.++.|++|.+|++
T Consensus 304 d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 304 DCELMAAASKDARISLWKL 322 (323)
T ss_pred CCchhhhccCCceEEeeec
Confidence 4589999999999999986
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=1.5e-18 Score=154.58 Aligned_cols=258 Identities=15% Similarity=0.131 Sum_probs=190.2
Q ss_pred ccceecccccceeeeecCCCCccc-ccccc--cccccccccccceEEecccccCccc----------cc-cccCCceEEE
Q 009380 175 LGFVIKDEFNGFKTCKDEGLGVGS-CDLIK--GVVKTEKIEVGSCVDIGSLTLKPEN----------IA-RIMPGRITQM 240 (536)
Q Consensus 175 ~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~--~~~~~~~~~~dg~v~lw~~~~~~~~----------~~-~~~~~~I~~v 240 (536)
+.+.+.-|..+|+.+.-+|....+ +++.+ +..+.+ .++-||.+..+-.. .+ ..+-+.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl-----~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cv 129 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVL-----TGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCV 129 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcce-----eeEEEEecccccCccccchhhHhhcCCHHHhCceeeE
Confidence 456677788999999988877554 44422 111111 36788987332111 11 1345799999
Q ss_pred EEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEe-----ccCCCCEEEEEEecCC-CCEEEEEECCCeEEEEECCC
Q 009380 241 KFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLF-----RTHLGPISGIVTQQYC-LSKIFTSCYDGLIRLMDAEK 314 (536)
Q Consensus 241 ~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~-----~~h~~~V~~l~~~~~~-~~~l~s~s~dg~I~vwd~~~ 314 (536)
.|.| ++..+++-. |..|.+|+++.... .+..+ ..|....++-+|+|.. .+.+++. .|++++.||+++
T Consensus 130 ew~P--ns~klasm~-dn~i~l~~l~ess~---~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT 202 (370)
T KOG1007|consen 130 EWEP--NSDKLASMD-DNNIVLWSLDESSK---IVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRT 202 (370)
T ss_pred EEcC--CCCeeEEec-cCceEEEEcccCcc---hheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccc
Confidence 9999 888888766 78999999987432 12221 2356678888999932 2555555 599999999997
Q ss_pred CeEEEe--ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC-ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380 315 EVFDLV--YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR-KSATEWLLHEARINTIDFNPRNPNIMATSSTDGT 391 (536)
Q Consensus 315 ~~~~~~--~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~ 391 (536)
...... ..|...|..+.|+|+...+|++++.||.|+|||.|.. .++.++.+|...|.+|.|+|...+++++|+.|..
T Consensus 203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~ 282 (370)
T KOG1007|consen 203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA 282 (370)
T ss_pred hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce
Confidence 654433 3577889999999999889999999999999999965 4589999999999999999988899999999999
Q ss_pred EEEEeCCCCCC-------------------------CCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCC
Q 009380 392 ACIWDLRSMAT-------------------------DKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 392 i~iwdl~~~~~-------------------------~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~ 444 (536)
|.+|-...... ....+..+..|...|++++|+. +.-.|++-++||.+.|=.+.
T Consensus 283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 99997654321 0011223446999999999998 55678888999999887653
No 178
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=8.9e-19 Score=171.79 Aligned_cols=273 Identities=13% Similarity=0.122 Sum_probs=209.2
Q ss_pred ceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEE
Q 009380 185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFW 263 (536)
Q Consensus 185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iw 263 (536)
.|..+.|.|||.-+.-. .+..+.+||.+.. ..+.+++|.+.|+|++|+. ||+.+|+|+.|..|.+|
T Consensus 14 ci~d~afkPDGsqL~lA-----------Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~--dGkrFASG~aDK~VI~W 80 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-----------AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK--DGKRFASGSADKSVIIW 80 (1081)
T ss_pred chheeEECCCCceEEEe-----------cCCEEEEEeCCCcccccccccccceEEEEEEcc--CCceeccCCCceeEEEe
Confidence 78899999999876632 3458889997443 3456799999999999999 99999999999999999
Q ss_pred ECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEE
Q 009380 264 NLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFG 343 (536)
Q Consensus 264 d~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g 343 (536)
+-.- +.+..+ .|+..|.|+.|+|-. ..|++|+-.. .-+|........ .+.....|.+++|..+| .+++.|
T Consensus 81 ~~kl-----EG~LkY-SH~D~IQCMsFNP~~-h~LasCsLsd-FglWS~~qK~V~-K~kss~R~~~CsWtnDG-qylalG 150 (1081)
T KOG1538|consen 81 TSKL-----EGILKY-SHNDAIQCMSFNPIT-HQLASCSLSD-FGLWSPEQKSVS-KHKSSSRIICCSWTNDG-QYLALG 150 (1081)
T ss_pred cccc-----cceeee-ccCCeeeEeecCchH-HHhhhcchhh-ccccChhhhhHH-hhhhheeEEEeeecCCC-cEEEEe
Confidence 9763 333333 599999999999998 8899998543 568887654332 22344678999999998 899999
Q ss_pred ECCCeEEEEECCCCccceeEe---ccCCCeEEEEEecCCC----CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCc
Q 009380 344 EGQGGLNIWDVRSRKSATEWL---LHEARINTIDFNPRNP----NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRA 416 (536)
Q Consensus 344 ~~dg~i~i~d~~~~~~~~~~~---~h~~~i~~i~~~p~~~----~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~ 416 (536)
-.+|+|.+-+- +++....+. +..++|.+|+|+|..+ .++++.....++.+|.+... .+-........
T Consensus 151 ~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-----~Igk~r~L~Fd 224 (1081)
T KOG1538|consen 151 MFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-----QIGKDRALNFD 224 (1081)
T ss_pred ccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-----eecccccCCCC
Confidence 99999999864 444433333 5778999999999532 47888888888888887652 12222234455
Q ss_pred eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380 417 VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 417 v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~ 492 (536)
..|+.+.++|.+++.|+.|+.+.+|.- .+-.+.++ .....|+.+ +...|++++++.|+.||+|-.|++..
T Consensus 225 P~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTv---g~~D~WIWt--V~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 225 PCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTV---GEQDSWIWT--VQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred chhheeccCCcEEEEccCCCceEEEee-cCeEEeec---cccceeEEE--EEEccCCceEEEEEccCeeehhhhHH
Confidence 678999999999999999999999963 44444443 235567776 56789999999999999999998743
No 179
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=1.1e-18 Score=158.25 Aligned_cols=251 Identities=21% Similarity=0.316 Sum_probs=179.9
Q ss_pred ccCCCCEEEEEEec----CCCCEEEEEECCCeEEEEECCCCeE---EEee---cCCCceeEEEecCCC---CCEEEEEEC
Q 009380 279 RTHLGPISGIVTQQ----YCLSKIFTSCYDGLIRLMDAEKEVF---DLVY---SSEYAVFSLSQQPNN---VNTLYFGEG 345 (536)
Q Consensus 279 ~~h~~~V~~l~~~~----~~~~~l~s~s~dg~I~vwd~~~~~~---~~~~---~~~~~i~~l~~~~~~---~~~l~~g~~ 345 (536)
..|..+|..++|++ +.+..+++++ ...+.+|....... ...+ .++.....++|..+. .-++++|+.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 46888999999985 2334555555 56788888765321 1111 356677788886542 347888899
Q ss_pred CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee----cccCceeEEE
Q 009380 346 QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL----SHKRAVHSAY 421 (536)
Q Consensus 346 dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~----~~~~~v~~l~ 421 (536)
-|.|+|.|+.++++...+.+|...|+.|.++|+.+++++++|.|..|++|++++.. ++.++ +|...|.++.
T Consensus 114 ~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~-----Cv~VfGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV-----CVAVFGGVEGHRDEVLSVD 188 (385)
T ss_pred eeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe-----EEEEecccccccCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999853 33333 6999999999
Q ss_pred EccCCCeEEEEeCCCcEEEEeCCCCCcceEEec-----cCCCCceeee---eEEEE-------------cCCCCEEEEEc
Q 009380 422 FSPSGSSLATTSFDDTIGIWSGVNFENTSMIHH-----NNQTGRWISS---FRAIW-------------GWDDSCVFIGN 480 (536)
Q Consensus 422 ~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~-------------s~~g~~l~~gs 480 (536)
|+++|.+|++++.|.+|++|++...+....+.. .+.+.+.+.. .-..| -.-|.++++-+
T Consensus 189 ~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSks 268 (385)
T KOG1034|consen 189 FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKS 268 (385)
T ss_pred EcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecc
Confidence 999999999999999999999973321111100 0000000000 00111 11367899988
Q ss_pred CCCcEEEEcC-Ccccc-------------ceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 481 MTRTVEVISP-AQRRS-------------VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 481 ~dg~I~v~d~-~~~~~-------------~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
-++.|..|.. .-.+. +.++.-....+....+++.|.. .+||.|+..|.|++||++
T Consensus 269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~ 337 (385)
T KOG1034|consen 269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLD 337 (385)
T ss_pred cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECC
Confidence 8999999987 22222 2333333344555678888854 899999999999999985
No 180
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=1.3e-17 Score=169.24 Aligned_cols=266 Identities=14% Similarity=0.153 Sum_probs=189.3
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-------EEeecCCCceeEE
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-------DLVYSSEYAVFSL 330 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-------~~~~~~~~~i~~l 330 (536)
+.+.||++... ......+. -...|.|+.|+|..+++++.|+++|.|.+||+..+.. .....|..+++.+
T Consensus 222 ~~~~vW~~~~p---~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 222 GVLLVWSLKNP---NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred ceEEEEecCCC---CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 47999999974 23333333 3568999999999999999999999999999987643 2334688999999
Q ss_pred EecCCCC-CEEEEEECCCeEEEEECCCCcc-cee--E--ec-------cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 009380 331 SQQPNNV-NTLYFGEGQGGLNIWDVRSRKS-ATE--W--LL-------HEARINTIDFNPRNPNIMATSSTDGTACIWDL 397 (536)
Q Consensus 331 ~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~-~~~--~--~~-------h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl 397 (536)
.|..+-. .-+++++.||.|..|+++.-.. ... + .. -...+++++|.+..++.|+.|+.+|.|.--..
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence 9976542 3488888999999999875432 111 1 11 22468899999999999999999999877443
Q ss_pred CCCCCCC----CCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC-CCCcceEEeccCCCCceeeeeEEEEcCC
Q 009380 398 RSMATDK----PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV-NFENTSMIHHNNQTGRWISSFRAIWGWD 472 (536)
Q Consensus 398 ~~~~~~~----~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 472 (536)
....... ........|.++|+++.++|-+..++..+.|.+++||... ...++..+.... ...+.++|||.
T Consensus 378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~-----~~v~~vaWSpt 452 (555)
T KOG1587|consen 378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSP-----DYVTDVAWSPT 452 (555)
T ss_pred cCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhcc-----ceeeeeEEcCc
Confidence 3322111 1122444689999999999977666555559999999976 444444443221 12455889997
Q ss_pred CC-EEEEEcCCCcEEEEcCCcc--ccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 473 DS-CVFIGNMTRTVEVISPAQR--RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 473 g~-~l~~gs~dg~I~v~d~~~~--~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
.. .|+++..+|.|.+||+... .++.+..-+ ..+...+.|++ .+..|++|...|.+++|++
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSP-NGKLLAVGDANGTTHILKL 515 (555)
T ss_pred CceEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCC-CCcEEEEecCCCcEEEEEc
Confidence 54 5788888999999999654 334443332 23334456665 5799999999999999987
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.5e-17 Score=144.84 Aligned_cols=276 Identities=16% Similarity=0.233 Sum_probs=196.6
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCC------CCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQ------DEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR 308 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~------~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~ 308 (536)
..|.+-+|+| .+++|++|..+|+|.+..+.... .....+..+++|.++|..++|+. .+|++|+ ||.|+
T Consensus 11 ~tvf~qa~sp--~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~ 84 (325)
T KOG0649|consen 11 NTVFAQAISP--SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVY 84 (325)
T ss_pred HHHHHHhhCC--cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEE
Confidence 3467778999 89999999999999999986421 11345667799999999999984 5788877 59999
Q ss_pred EEECCCCe----EEEe------e----cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEE
Q 009380 309 LMDAEKEV----FDLV------Y----SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTID 374 (536)
Q Consensus 309 vwd~~~~~----~~~~------~----~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~ 374 (536)
-|..+... +..+ + ..--.|+++-..|.. +.+++++.|+.++-||+++|+...++.+|++.|.++.
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV 163 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence 99875421 1110 0 112368899999887 5666666899999999999999999999999999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec--------ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 009380 375 FNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS--------HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF 446 (536)
Q Consensus 375 ~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~--------~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~ 446 (536)
--..+ -.+++|++||++++||.++.+.. ..+..+. -...|.+++.+ ..++++|+ ...+.+|.++..
T Consensus 164 ~R~~~-~qilsG~EDGtvRvWd~kt~k~v--~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrss 237 (325)
T KOG0649|consen 164 GRNAN-GQILSGAEDGTVRVWDTKTQKHV--SMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSS 237 (325)
T ss_pred ecccC-cceeecCCCccEEEEecccccee--EEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCC
Confidence 85544 36899999999999999997532 1111111 22345666654 55777666 456999999999
Q ss_pred CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEcc
Q 009380 447 ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 526 (536)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~ 526 (536)
++..++..... +.. +.|. ...+++++..+.|.-|.+..- .-..++..+......++..+| -.+|..++.
T Consensus 238 e~t~vfpipa~----v~~--v~F~--~d~vl~~G~g~~v~~~~l~Gv-l~a~ip~~s~~c~s~s~~~~p--~k~~s~ag~ 306 (325)
T KOG0649|consen 238 ESTCVFPIPAR----VHL--VDFV--DDCVLIGGEGNHVQSYTLNGV-LQANIPVESTACYSASWQTSP--IKFISIAGF 306 (325)
T ss_pred CceEEEecccc----eeE--eeee--cceEEEeccccceeeeeeccE-EEEeccCCccceeeecccCCc--eEEEEeccc
Confidence 99988864432 121 3343 457888888888999987543 444445444444434444556 357778888
Q ss_pred CCeEEEEe
Q 009380 527 GGQVYVWT 534 (536)
Q Consensus 527 Dg~v~iW~ 534 (536)
.+++.|+.
T Consensus 307 s~~~~i~~ 314 (325)
T KOG0649|consen 307 SNKLHILK 314 (325)
T ss_pred ceeeeeee
Confidence 88888863
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=7.5e-18 Score=173.31 Aligned_cols=293 Identities=18% Similarity=0.163 Sum_probs=207.7
Q ss_pred ceeeeecCCCCcccccccccccccccccccceEEecccccCccccccc------cCCceEEEEEEecCCccEEEEEeCCC
Q 009380 185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARI------MPGRITQMKFLPCSDVRMVVAGSKLG 258 (536)
Q Consensus 185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~------~~~~I~~v~~~p~~~~~~l~tg~~dg 258 (536)
.-..+.|+|....++.. ...-.|.+||..... .+.. ....|+.+.+-...|..++++|+.||
T Consensus 1066 ~pk~~~~hpf~p~i~~a----------d~r~~i~vwd~e~~~--~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dG 1133 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAA----------DDRERIRVWDWEKGR--LLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDG 1133 (1387)
T ss_pred CCceeeecCCCceeEEc----------CCcceEEEEecccCc--eeccccCCCCCCCccceeeeecccchhheeeeccCc
Confidence 34556677777666643 222377888864322 2222 25689999998876778999999999
Q ss_pred cEEEEECCCCC-CCCCceEEeccC-------CCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe--ecCCCcee
Q 009380 259 NITFWNLDSQQ-DEDNGIYLFRTH-------LGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV--YSSEYAVF 328 (536)
Q Consensus 259 ~v~iwd~~~~~-~~~~~~~~~~~h-------~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~--~~~~~~i~ 328 (536)
.|+||+-.... ...+.+..+.+- .+.=.-+.|.... .+|++++.-..|+|||..++....- ++.+..|+
T Consensus 1134 vIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vT 1212 (1387)
T KOG1517|consen 1134 VIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVT 1212 (1387)
T ss_pred eEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeecccCCCccce
Confidence 99999865432 223344433321 1111345788777 6777777789999999998866543 34566788
Q ss_pred EEEecCCCCCEEEEEECCCeEEEEECCCCc---cceeEeccCCC--eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 009380 329 SLSQQPNNVNTLYFGEGQGGLNIWDVRSRK---SATEWLLHEAR--INTIDFNPRNPNIMATSSTDGTACIWDLRSMATD 403 (536)
Q Consensus 329 ~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~---~~~~~~~h~~~--i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~ 403 (536)
++.-+-..++++++|..||.|++||.|... .+..+..|... |..+.+.+.|-..|++|+.||.|++||+|...
T Consensus 1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-- 1290 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-- 1290 (1387)
T ss_pred eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc--
Confidence 887766666899999999999999999754 37778889888 99999999776679999999999999999842
Q ss_pred CCCcceeeccc---CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc-CCCCc-eeeeeEEEEcCCCCEEEE
Q 009380 404 KPEPMKVLSHK---RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN-NQTGR-WISSFRAIWGWDDSCVFI 478 (536)
Q Consensus 404 ~~~~~~~~~~~---~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~-~~~~~~~~~s~~g~~l~~ 478 (536)
.........|. +..+++..++....+++|+. +.|+||++.. +.+..+..+ ...+. .....++.|+|..-.+++
T Consensus 1291 ~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAa 1368 (1387)
T KOG1517|consen 1291 KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAA 1368 (1387)
T ss_pred ccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhh
Confidence 12233333332 35999999999999999998 9999999853 333333211 11111 112244789999889999
Q ss_pred EcCCCcEEEEcCCccc
Q 009380 479 GNMTRTVEVISPAQRR 494 (536)
Q Consensus 479 gs~dg~I~v~d~~~~~ 494 (536)
|+.|..|.||.....+
T Consensus 1369 G~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1369 GSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccCCceEEEeecCCcC
Confidence 9999999999876653
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1e-18 Score=169.00 Aligned_cols=262 Identities=15% Similarity=0.192 Sum_probs=189.1
Q ss_pred cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCC----CCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC
Q 009380 229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQ----QDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD 304 (536)
Q Consensus 229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~----~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d 304 (536)
....|.+.|..++|+| ....|++++.||.|.+|+++.. .....++.+|.+|.++|.|++..+.+ ..+++|+.|
T Consensus 289 tl~s~~d~ir~l~~~~--sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~-~~~ysgg~D 365 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHP--SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG-EHCYSGGID 365 (577)
T ss_pred eeecchhhhhhhhcCC--CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc-eEEEeeccC
Confidence 4567889999999999 7789999999999999999431 22357889999999999999999998 999999999
Q ss_pred CeEEEEECCCC-----------eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec--cCCCeE
Q 009380 305 GLIRLMDAEKE-----------VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL--HEARIN 371 (536)
Q Consensus 305 g~I~vwd~~~~-----------~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h~~~i~ 371 (536)
|+|+.|++... -...+.+|.+.++.+++++.. ..|++++.||+++.|+.....+ .++.. -.+.-.
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 99999976521 123456899999999999987 7799999999999999876655 33332 123334
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC---CcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc
Q 009380 372 TIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP---EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN 448 (536)
Q Consensus 372 ~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~---~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~ 448 (536)
++++-.....+.++...-+.--++|+........ ...........+.-+.++|.+.+.+++..|+.|+++|..++..
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 5666543322333333233333333333210000 0000011224678899999999999999999999999999888
Q ss_pred ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380 449 TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~ 500 (536)
+....... ......++.|+|.+|++|+.|+.+++|.+....++....
T Consensus 524 l~s~~a~~-----~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 524 LHSMVAHK-----DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred chheeecc-----ceecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence 77654322 122336689999999999999999999987765554443
No 184
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=1.3e-16 Score=157.93 Aligned_cols=278 Identities=10% Similarity=0.119 Sum_probs=177.7
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE-CCCeEEEEECC-CCeEEEe--ecCCCc
Q 009380 251 VVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC-YDGLIRLMDAE-KEVFDLV--YSSEYA 326 (536)
Q Consensus 251 l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s-~dg~I~vwd~~-~~~~~~~--~~~~~~ 326 (536)
+++...++.|.+|++.+.. ....+..+. +.+....++++|++ ++|++++ .++.|.+|++. ++.+... ......
T Consensus 5 y~~~~~~~~I~~~~~~~~g-~l~~~~~~~-~~~~~~~l~~spd~-~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEG-ALTLLQVVD-VPGQVQPMVISPDK-RHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred EEEcCCCCCEEEEEECCCC-ceeeeeEEe-cCCCCccEEECCCC-CEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC
Confidence 4445678999999996421 123444443 34567789999998 7776664 58889999997 3443222 223345
Q ss_pred eeEEEecCCCCCEEEEEE-CCCeEEEEECCCCc-c---ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCC
Q 009380 327 VFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSRK-S---ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMA 401 (536)
Q Consensus 327 i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~~-~---~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~ 401 (536)
...++++|++ +.+++++ .++.|.+||+.+.. . +..+. +.....+++++|++..++++...++.|.+||+.+..
T Consensus 82 p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 82 PTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred ceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 6789999998 6666665 48899999997432 2 22222 334567789999886555666677999999997632
Q ss_pred CCCCC-cce-eecccCceeEEEEccCCCeEEEEeC-CCcEEEEeCCCC--C--cceEEecc-C--CCCceeeeeEEEEcC
Q 009380 402 TDKPE-PMK-VLSHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNF--E--NTSMIHHN-N--QTGRWISSFRAIWGW 471 (536)
Q Consensus 402 ~~~~~-~~~-~~~~~~~v~~l~~sp~g~~l~t~s~-dg~I~iwd~~~~--~--~~~~~~~~-~--~~~~~~~~~~~~~s~ 471 (536)
..... ... ..........+.|+|+|++++++.. ++.|.+|++... + ....+... . .... ....+.++|
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~i~~~p 237 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTR--WAADIHITP 237 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCc--cceeEEECC
Confidence 11100 000 1122345678999999999988876 899999999732 2 12222111 1 1111 122367899
Q ss_pred CCCEEEEEcC-CCcEEEEcCCccccceeccCCc-eeeeeeeEeecCCCCCEEEEEcc-CCeEEEEecC
Q 009380 472 DDSCVFIGNM-TRTVEVISPAQRRSVATLQSPY-ISAIPCRFHAHPHQVGTLAGATG-GGQVYVWTSD 536 (536)
Q Consensus 472 ~g~~l~~gs~-dg~I~v~d~~~~~~~~~l~~~~-~~~~~~~~~~~p~~~~~lasgs~-Dg~v~iW~~d 536 (536)
+++++++++. ++.|.+|++.......++..+. ....+..+.++| ++.+|++++. ++.|.+|+++
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDH-SGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECC-CCCEEEEEEccCCcEEEEEEc
Confidence 9999999865 6889999986543222222111 111234678888 5678777664 8999999864
No 185
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.2e-17 Score=171.82 Aligned_cols=288 Identities=16% Similarity=0.205 Sum_probs=202.6
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC---CCEEEEEEecC-CCCEEEEEECCCeEEE
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL---GPISGIVTQQY-CLSKIFTSCYDGLIRL 309 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~~~~-~~~~l~s~s~dg~I~v 309 (536)
.+.-..+.|+| -...+++++..-.|+|||.+. +..+..|..+. ..|+.+.+-.. ...++++|+.||.|+|
T Consensus 1064 ~~~pk~~~~hp--f~p~i~~ad~r~~i~vwd~e~----~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1064 NQPPKTLKFHP--FEPQIAAADDRERIRVWDWEK----GRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred CCCCceeeecC--CCceeEEcCCcceEEEEeccc----CceeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence 33566788999 667899988778999999987 55555555443 45888887543 3378999999999999
Q ss_pred EECC-C--CeEEEee----------cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEE
Q 009380 310 MDAE-K--EVFDLVY----------SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDF 375 (536)
Q Consensus 310 wd~~-~--~~~~~~~----------~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~ 375 (536)
|+-- . ++...+. +..+.-.-++|.... .+|++++.-..|+|||......+..+. +....|+++.-
T Consensus 1138 wk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1138 WKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred ecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeecccCCCccceeecc
Confidence 9732 2 2221111 111222456787776 456666667799999998877666655 45567888877
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCc--eeEEEEccCCC-eEEEEeCCCcEEEEeCCCCCcceE-
Q 009380 376 NPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRA--VHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTSM- 451 (536)
Q Consensus 376 ~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~--v~~l~~sp~g~-~l~t~s~dg~I~iwd~~~~~~~~~- 451 (536)
+-.+++++++|..||.|++||.|..... ..+.....|... |..+.+.+.|- .|++|+.||.|++||++.......
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc
Confidence 6666689999999999999999986432 234444578777 99999999764 499999999999999997422222
Q ss_pred -EeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc------CCceeeeeeeEeecCCCCCEEEEE
Q 009380 452 -IHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ------SPYISAIPCRFHAHPHQVGTLAGA 524 (536)
Q Consensus 452 -~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~------~~~~~~~~~~~~~~p~~~~~lasg 524 (536)
+......|..++. +..++....+++|+. +.|.||++.+.++ ..+. +...... .++.|||.. -+||+|
T Consensus 1296 ~iv~~~~yGs~lTa--l~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~-scL~FHP~~-~llAaG 1369 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTA--LTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSV-SCLAFHPHR-LLLAAG 1369 (1387)
T ss_pred eeeeccccCcccee--eeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCCCc-ceeeecchh-Hhhhhc
Confidence 2222222333444 334677889999998 8999999876533 2222 2222222 579999976 789999
Q ss_pred ccCCeEEEEec
Q 009380 525 TGGGQVYVWTS 535 (536)
Q Consensus 525 s~Dg~v~iW~~ 535 (536)
+.|..|.||..
T Consensus 1370 ~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1370 SADSTVSIYSC 1380 (1387)
T ss_pred cCCceEEEeec
Confidence 99999999975
No 186
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=1e-17 Score=151.88 Aligned_cols=311 Identities=14% Similarity=0.142 Sum_probs=209.5
Q ss_pred eeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEE-EEeCCCcEEEEECC
Q 009380 188 TCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVV-AGSKLGNITFWNLD 266 (536)
Q Consensus 188 ~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~-tg~~dg~v~iwd~~ 266 (536)
.|.|||+|+++|.+.+ ..+.+-|...-+....-..-+.|.-+.|.. |..+++ ...+++.|.+|++.
T Consensus 13 ~c~fSp~g~yiAs~~~-----------yrlviRd~~tlq~~qlf~cldki~yieW~a--ds~~ilC~~yk~~~vqvwsl~ 79 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR-----------YRLVIRDSETLQLHQLFLCLDKIVYIEWKA--DSCHILCVAYKDPKVQVWSLV 79 (447)
T ss_pred ceeECCCCCeeeeeee-----------eEEEEeccchhhHHHHHHHHHHhhheeeec--cceeeeeeeeccceEEEEEee
Confidence 6889999999997721 245555532211111112257888999997 665555 55788899999998
Q ss_pred CCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECC
Q 009380 267 SQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ 346 (536)
Q Consensus 267 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d 346 (536)
. .+-...+.....++.+++|+|+|...|.+...|-.|.||.+.+.....+......+..++|+|++ ++.+..+.-
T Consensus 80 Q----pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg-~f~ai~sRr 154 (447)
T KOG4497|consen 80 Q----PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDG-QFCAILSRR 154 (447)
T ss_pred c----ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCC-ceeeeeecc
Confidence 6 44555666777889999999999778888889999999999998887777667778999999999 676666543
Q ss_pred CeEEEEEC---CCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEc
Q 009380 347 GGLNIWDV---RSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFS 423 (536)
Q Consensus 347 g~i~i~d~---~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~s 423 (536)
.....+++ ..-..+..+...+-..+.|.|+|+| +.+ .+||---. ..+-.+...-.+..+.|+
T Consensus 155 DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg-~~l---------aVwd~~Le-----ykv~aYe~~lG~k~v~ws 219 (447)
T KOG4497|consen 155 DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG-NWL---------AVWDNVLE-----YKVYAYERGLGLKFVEWS 219 (447)
T ss_pred cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC-cEE---------EEecchhh-----heeeeeeeccceeEEEec
Confidence 22222222 2223455566666678899999987 444 46663220 111122344678899999
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCCcceEEecc------------------------------------------------
Q 009380 424 PSGSSLATTSFDDTIGIWSGVNFENTSMIHHN------------------------------------------------ 455 (536)
Q Consensus 424 p~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~------------------------------------------------ 455 (536)
|.+++|++|+.|+.++|.+--+.+....+.|.
T Consensus 220 P~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~ 299 (447)
T KOG4497|consen 220 PCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQ 299 (447)
T ss_pred cccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhh
Confidence 99999999999999998763222211111000
Q ss_pred -------------CCCCceeeeeEEEEcCCCCEEEEEcCC--CcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCE
Q 009380 456 -------------NQTGRWISSFRAIWGWDDSCVFIGNMT--RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGT 520 (536)
Q Consensus 456 -------------~~~~~~~~~~~~~~s~~g~~l~~gs~d--g~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~ 520 (536)
.........-.++|++|..|+++-+.+ +.+-+||+...+....+...| .+ ..+.|+|.. ..
T Consensus 300 ~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~--pi-raf~WdP~~-pr 375 (447)
T KOG4497|consen 300 MTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKH--PI-RAFEWDPGR-PR 375 (447)
T ss_pred hcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcc--ce-eEEEeCCCC-ce
Confidence 000001112236799999999887655 679999999987766654322 22 368999976 56
Q ss_pred EEEEccCCeEEEEec
Q 009380 521 LAGATGGGQVYVWTS 535 (536)
Q Consensus 521 lasgs~Dg~v~iW~~ 535 (536)
|+.+.....+++|..
T Consensus 376 L~vctg~srLY~W~p 390 (447)
T KOG4497|consen 376 LVVCTGKSRLYFWAP 390 (447)
T ss_pred EEEEcCCceEEEEcC
Confidence 666666678999963
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.1e-17 Score=148.92 Aligned_cols=276 Identities=15% Similarity=0.134 Sum_probs=183.9
Q ss_pred cccccceEEeccccc-CccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC-CCEEE
Q 009380 210 KIEVGSCVDIGSLTL-KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL-GPISG 287 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~-~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~-~~V~~ 287 (536)
.+-..|.|+|||... +.....++++..++.++|........+.+++.||+|++||+.... ......+..|. .+..|
T Consensus 45 v~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~--e~a~~~~~~~~~~~f~~ 122 (376)
T KOG1188|consen 45 VSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA--ESARISWTQQSGTPFIC 122 (376)
T ss_pred EEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch--hhhheeccCCCCCcceE
Confidence 344567899998754 234456889999999999875456789999999999999998753 23444555555 56677
Q ss_pred EEEecCCCCEEEEEEC----CCeEEEEECCCCeE-E--EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-
Q 009380 288 IVTQQYCLSKIFTSCY----DGLIRLMDAEKEVF-D--LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS- 359 (536)
Q Consensus 288 l~~~~~~~~~l~s~s~----dg~I~vwd~~~~~~-~--~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~- 359 (536)
++.+..+ +.+++|.. |-.|.+||++..+. . ....|...|++++|+|.++++|++|+.||.|.+||+.....
T Consensus 123 ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 123 LDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred eeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7776565 67777753 67899999987654 2 23368899999999999999999999999999999986532
Q ss_pred --ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--c------ccCceeEEEEcc-CCCe
Q 009380 360 --ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--S------HKRAVHSAYFSP-SGSS 428 (536)
Q Consensus 360 --~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~------~~~~v~~l~~sp-~g~~ 428 (536)
+.....|...|.++.|+..+-..+.+-+..++..+|++..+........... . .-..+-.. .+| ++..
T Consensus 202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~ 280 (376)
T KOG1188|consen 202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDT 280 (376)
T ss_pred hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcce
Confidence 3333358888999999987655788888899999999998753211111100 0 00111111 223 4445
Q ss_pred EEEEeC-CCcEEEEeCCC---CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380 429 LATTSF-DDTIGIWSGVN---FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 429 l~t~s~-dg~I~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
+++++. -+...++-+.. +........ .+.+..-.+-.+.|...+.++++|+.||.+.+|..
T Consensus 281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~-l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 281 CALAGTDSNKGTIFPLVDTSSGSLLTEPAI-LQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred EEEeccccCceeEEEeeecccccccCcccc-ccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 555554 55666655432 221111110 01111111111346667889999999999999985
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=4.2e-16 Score=154.21 Aligned_cols=271 Identities=12% Similarity=0.137 Sum_probs=171.4
Q ss_pred cccceEEecccccCcc-cccc-c-cCCceEEEEEEecCCccEEEEEe-CCCcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380 212 EVGSCVDIGSLTLKPE-NIAR-I-MPGRITQMKFLPCSDVRMVVAGS-KLGNITFWNLDSQQDEDNGIYLFRTHLGPISG 287 (536)
Q Consensus 212 ~~dg~v~lw~~~~~~~-~~~~-~-~~~~I~~v~~~p~~~~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~ 287 (536)
..++.|.+|++..... ...+ . +.+....++++| ++++|++++ .++.|.+|++.... ....+... ...+....
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~sp--d~~~lyv~~~~~~~i~~~~~~~~g-~l~~~~~~-~~~~~p~~ 84 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISP--DKRHLYVGVRPEFRVLSYRIADDG-ALTFAAES-PLPGSPTH 84 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEecCCCCccEEECC--CCCEEEEEECCCCcEEEEEECCCC-ceEEeeee-cCCCCceE
Confidence 5578899999843211 1111 1 346788899999 999887664 57899999997311 01112222 23345678
Q ss_pred EEEecCCCCEEEEEEC-CCeEEEEECCC-Ce---EEEeecCCCceeEEEecCCCCCEEE-EEECCCeEEEEECCCCccce
Q 009380 288 IVTQQYCLSKIFTSCY-DGLIRLMDAEK-EV---FDLVYSSEYAVFSLSQQPNNVNTLY-FGEGQGGLNIWDVRSRKSAT 361 (536)
Q Consensus 288 l~~~~~~~~~l~s~s~-dg~I~vwd~~~-~~---~~~~~~~~~~i~~l~~~~~~~~~l~-~g~~dg~i~i~d~~~~~~~~ 361 (536)
++|+|++ ++|+++++ ++.|.+|++++ +. ......+...+.+++++|++ ++++ +...++.|.+||+.+...+.
T Consensus 85 i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g-~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 85 ISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDN-RTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCC-CEEEEeeCCCCEEEEEEECCCCccc
Confidence 9999999 88877765 89999999974 22 22222333456788999998 5555 45566999999998643221
Q ss_pred -----eEe-ccCCCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCCCCcceeec------ccCceeEEEEccCCCe
Q 009380 362 -----EWL-LHEARINTIDFNPRNPNIMATSS-TDGTACIWDLRSMATDKPEPMKVLS------HKRAVHSAYFSPSGSS 428 (536)
Q Consensus 362 -----~~~-~h~~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~~~~~~~~~~~~~~------~~~~v~~l~~sp~g~~ 428 (536)
... ........+.|+|++. +++++. .++.|.+||+............... +......+.|+|+|++
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 111 1234567899999884 555555 4899999999742110101111111 1123346889999999
Q ss_pred EEEEeC-CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC-CCcEEEEcCC
Q 009380 429 LATTSF-DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM-TRTVEVISPA 491 (536)
Q Consensus 429 l~t~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~-dg~I~v~d~~ 491 (536)
++++.. ++.|.+|++........+......+.... .+.++|+|++|++++. ++.|.+|++.
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~--~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPR--GFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCC--ceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 998864 78899999865432222211111221112 2678999999998775 7899999874
No 189
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=1.3e-17 Score=162.86 Aligned_cols=239 Identities=15% Similarity=0.211 Sum_probs=177.1
Q ss_pred CccEEEE--EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-------
Q 009380 247 DVRMVVA--GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF------- 317 (536)
Q Consensus 247 ~~~~l~t--g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~------- 317 (536)
+..++|+ .+..|.|.||++.....-...+..-.-....|+.+.|.|-....|+.++.||.|++|.+..+..
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP 669 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP 669 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc
Confidence 3445554 3556899999998653212222222224567999999998879999999999999999875422
Q ss_pred -EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEe
Q 009380 318 -DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWD 396 (536)
Q Consensus 318 -~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwd 396 (536)
..+..|...|+++.|+|-..+.|++++.|-+|.+||+++++....+.+|.+.|.+++|+|+| +.+|+.+.||+|++|.
T Consensus 670 e~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 670 EKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDG-RRIATVCKDGTLRVYE 748 (1012)
T ss_pred ceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCC-cceeeeecCceEEEeC
Confidence 34556889999999999888899999999999999999999999999999999999999998 7999999999999999
Q ss_pred CCCCCCCCCCcceee-c-ccCceeEEEEccCCCeEEEEeCCC----cEEEEeCCCCC--cceEEeccCCCCceeeeeEEE
Q 009380 397 LRSMATDKPEPMKVL-S-HKRAVHSAYFSPSGSSLATTSFDD----TIGIWSGVNFE--NTSMIHHNNQTGRWISSFRAI 468 (536)
Q Consensus 397 l~~~~~~~~~~~~~~-~-~~~~v~~l~~sp~g~~l~t~s~dg----~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~ 468 (536)
.++.. .++..- + -...-..|.|.-+|+++++.+.|. .|.+||..+.. ++.+....... ..+-..
T Consensus 749 Prs~e----~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap----s~LvP~ 820 (1012)
T KOG1445|consen 749 PRSRE----QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP----SPLVPH 820 (1012)
T ss_pred CCCCC----CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC----cccccc
Confidence 99853 222211 1 123335678888999999998775 58899977543 33333222111 122245
Q ss_pred EcCCCC-EEEEEcCCCcEEEEcCCccc
Q 009380 469 WGWDDS-CVFIGNMTRTVEVISPAQRR 494 (536)
Q Consensus 469 ~s~~g~-~l~~gs~dg~I~v~d~~~~~ 494 (536)
+.+|.. +|++|-.|..|.+|.+-...
T Consensus 821 YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 821 YDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred ccCCCceEEEecCCCceEEEEEecCCC
Confidence 667755 47788889999999886543
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=2.2e-17 Score=158.48 Aligned_cols=264 Identities=16% Similarity=0.159 Sum_probs=191.5
Q ss_pred cccceeeeecCCCCcccccccccccccccccccceEEe-cccccCccccccccCCceEEEEE-Eec-----CCccEEEEE
Q 009380 182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDI-GSLTLKPENIARIMPGRITQMKF-LPC-----SDVRMVVAG 254 (536)
Q Consensus 182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~l-w~~~~~~~~~~~~~~~~I~~v~~-~p~-----~~~~~l~tg 254 (536)
|..-|.||.++.....+..+ .|..+.+ |++..+...+.+..++-|....+ -|. ...+.++.+
T Consensus 13 ~~e~vc~v~w~~~eei~~~~-----------dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~ 81 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVS-----------DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLIC 81 (737)
T ss_pred cceeEEeecccccceEEEec-----------cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEE
Confidence 44455677777777766644 2233333 45444444444444443333322 110 122578888
Q ss_pred eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380 255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQP 334 (536)
Q Consensus 255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~ 334 (536)
+.||.+.|.+-. +.....+..|.+.|.+-.|+|+| .-|++++.||.|++|.-..--...+.....+|.|++|.|
T Consensus 82 s~DGkf~il~k~-----~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 82 SNDGRFVILNKS-----ARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred cCCceEEEeccc-----chhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECC
Confidence 899999998765 56667888999999999999999 999999999999999965543334455678999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc
Q 009380 335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK 414 (536)
Q Consensus 335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~ 414 (536)
+..+.+++.+ +.+.|=-+.....+-.++.|.+-|.++.|++.+ +++++|++|-..+|||-.. ........|.
T Consensus 156 ~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G-----~~Lf~S~~~e 227 (737)
T KOG1524|consen 156 NSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQG-----ANLFTSAAEE 227 (737)
T ss_pred CCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccC-----cccccCChhc
Confidence 9966666544 467777777666788899999999999999977 7999999999999999764 2455566899
Q ss_pred CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380 415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488 (536)
Q Consensus 415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~ 488 (536)
.+|++++|+|+ ..++.++. +++++=.. ..| +++.++||+||..+++|+..|.+.+-
T Consensus 228 y~ITSva~npd-~~~~v~S~-nt~R~~~p-------------~~G---SifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 228 YAITSVAFNPE-KDYLLWSY-NTARFSSP-------------RVG---SIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred cceeeeeeccc-cceeeeee-eeeeecCC-------------Ccc---ceEEEEEcCCCceeeccccCceEEEe
Confidence 99999999999 66666664 34441111 122 44568899999999999999876553
No 191
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=1.6e-18 Score=174.14 Aligned_cols=289 Identities=16% Similarity=0.165 Sum_probs=222.3
Q ss_pred cccccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc-ccccccCCceEEEEEEecCCc
Q 009380 170 CKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDV 248 (536)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~ 248 (536)
++..++...+.||.+.|.|+.|...|+.+. +++.|..+++|.+..... .-..+|.+.|+.++.+. +.
T Consensus 177 vqkmk~ikrLlgH~naVyca~fDrtg~~Ii----------tgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~--~n 244 (1113)
T KOG0644|consen 177 VQKMKNIKRLLGHRNAVYCAIFDRTGRYII----------TGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS--NN 244 (1113)
T ss_pred HHHHHHHHHHHhhhhheeeeeeccccceEe----------ecCccceeeeeeccchhhhccCCCCccccchhccch--hh
Confidence 355677788999999999999999999888 457778899999855433 34689999999999998 88
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-----ecC
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-----YSS 323 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-----~~~ 323 (536)
.++++++.|..|++|.+.+ +.++..+.+|++.|++|+|+|-. +.+.||++++||.+-...... +..
T Consensus 245 ~~iaaaS~D~vIrvWrl~~----~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPD----GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTE 315 (1113)
T ss_pred hhhhhcccCceEEEEecCC----CchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCccc
Confidence 8999999999999999998 78899999999999999999953 778899999999882211111 123
Q ss_pred CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 009380 324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD 403 (536)
Q Consensus 324 ~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~ 403 (536)
..-+.++-|..++ .-+++|+.|+.-..|.+..-. .+...+.-+.++.+-..+.+++-.+-.+++|++-++.
T Consensus 316 ~~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~-- 386 (1113)
T KOG0644|consen 316 KDLVDSILFENNG-DRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ-- 386 (1113)
T ss_pred ccceeeeeccccc-cccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccch--
Confidence 3556667776666 678899999888887654321 2222222233333333577777778899999999864
Q ss_pred CCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC
Q 009380 404 KPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT 482 (536)
Q Consensus 404 ~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d 482 (536)
......+|...+..+.++| +.....+++.||.+.|||+..+.++...... . ...+...||++|..++....-
T Consensus 387 --l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h---~kl~d~kFSqdgts~~lsd~h 459 (1113)
T KOG0644|consen 387 --LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--H---GKLVDGKFSQDGTSIALSDDH 459 (1113)
T ss_pred --hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--c---ceeeccccCCCCceEecCCCC
Confidence 4555668999999999999 5566778899999999999988888776522 2 233447899999999998888
Q ss_pred CcEEEEcCCcccc
Q 009380 483 RTVEVISPAQRRS 495 (536)
Q Consensus 483 g~I~v~d~~~~~~ 495 (536)
|.++|+....++.
T Consensus 460 gql~i~g~gqs~s 472 (1113)
T KOG0644|consen 460 GQLYILGTGQSKS 472 (1113)
T ss_pred CceEEeccCCCcc
Confidence 9999987755543
No 192
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.76 E-value=2.5e-16 Score=164.75 Aligned_cols=258 Identities=13% Similarity=0.221 Sum_probs=180.8
Q ss_pred cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC---CCceEEeccCCCCEEEEEEecCCCCEEEEEECCC
Q 009380 229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE---DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG 305 (536)
Q Consensus 229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg 305 (536)
.++.|...|..++.++. ++.++++|+.||+|++|+...-... .....++..-...+.++...+.+ +.++.++.||
T Consensus 1043 hL~Ehs~~v~k~a~s~~-~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSE-HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAVSTKDG 1120 (1431)
T ss_pred hhhhccccccceeecCC-CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEEEcCCC
Confidence 34556888889998872 4599999999999999999764321 23334555567889999999998 9999999999
Q ss_pred eEEEEECCCCeE-------EEee--cCCCceeE-EEecCCCCC-EEEEEECCCeEEEEECCCCccceeEe--ccCCCeEE
Q 009380 306 LIRLMDAEKEVF-------DLVY--SSEYAVFS-LSQQPNNVN-TLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINT 372 (536)
Q Consensus 306 ~I~vwd~~~~~~-------~~~~--~~~~~i~~-l~~~~~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~ 372 (536)
.|++.+++.... .... ...+.+.+ -+|...... .++.++..+.|..||+++......++ ...+.|++
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 999999876211 1111 12233333 344333323 78888999999999999877665554 44578999
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee-ecccCceeEEEEccCC---CeEEEEe--CCCcEEEEeCCCC
Q 009380 373 IDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV-LSHKRAVHSAYFSPSG---SSLATTS--FDDTIGIWSGVNF 446 (536)
Q Consensus 373 i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~-~~~~~~v~~l~~sp~g---~~l~t~s--~dg~I~iwd~~~~ 446 (536)
++.+|.+ ++++.|...|.+.+||+|-.. .+... .++..+|+.+..+|-. ...++++ ..+.|.+|++.++
T Consensus 1201 i~idp~~-~WlviGts~G~l~lWDLRF~~----~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1201 IVIDPWC-NWLVIGTSRGQLVLWDLRFRV----PILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred EEecCCc-eEEEEecCCceEEEEEeecCc----eeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 9999976 799999999999999999742 22222 2566888999888832 3454444 4677999999988
Q ss_pred CcceEEeccC---------CC-----CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 447 ENTSMIHHNN---------QT-----GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 447 ~~~~~~~~~~---------~~-----~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
.+..++.... +. ...+....+.+...+.++++|+.|..|+.||....
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 7666654320 11 11112222334445668999999999999998643
No 193
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.75 E-value=1.6e-16 Score=148.09 Aligned_cols=289 Identities=12% Similarity=0.189 Sum_probs=198.5
Q ss_pred cceeeeecCCCCc-ccccccccccccccccccceEEecccccCcc----------ccccccCCceEEEEEEecCCccEEE
Q 009380 184 NGFKTCKDEGLGV-GSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE----------NIARIMPGRITQMKFLPCSDVRMVV 252 (536)
Q Consensus 184 ~~v~~~~~s~~~~-~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~----------~~~~~~~~~I~~v~~~p~~~~~~l~ 252 (536)
..|..+.|.+... .++ +++.|..|+||.+...+. ..+..|...|++|.|+| +|++||
T Consensus 14 ~pv~s~dfq~n~~~~la----------T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p--~gelLA 81 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLA----------TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP--DGELLA 81 (434)
T ss_pred CceEEEEeccCccccee----------cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC--CcCeee
Confidence 4555555555554 444 678889999998743221 23456899999999999 999999
Q ss_pred EEeCCCcEEEEECCCC------C------CCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe
Q 009380 253 AGSKLGNITFWNLDSQ------Q------DEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV 320 (536)
Q Consensus 253 tg~~dg~v~iwd~~~~------~------~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~ 320 (536)
+|+.+|.|.+|..... . +.......+.+|...|..++|+|++ .++++++.|.++++||+..+.....
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~ 160 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAI 160 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEee
Confidence 9999999999987610 0 0123445678899999999999999 9999999999999999999987665
Q ss_pred e-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-------------------ccCC----CeEEEEEe
Q 009380 321 Y-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-------------------LHEA----RINTIDFN 376 (536)
Q Consensus 321 ~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-------------------~h~~----~i~~i~~~ 376 (536)
. .|...+..++|.|-+ +++++-+.|...+.+++...+.++... -|.. -...++|+
T Consensus 161 ~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfT 239 (434)
T KOG1009|consen 161 LDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFT 239 (434)
T ss_pred ccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccC
Confidence 5 688899999999987 788887777766666655433221111 0222 23467889
Q ss_pred cCCCCEEEEEeC----CC-----cEEEEeCCCCCCCCCCcceeecccCceeEEEEcc------------------CCCeE
Q 009380 377 PRNPNIMATSST----DG-----TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP------------------SGSSL 429 (536)
Q Consensus 377 p~~~~~l~s~s~----dg-----~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp------------------~g~~l 429 (536)
|+| .++++.+. .+ +.++|+-...+ .....+......+..+.|+| -+-.+
T Consensus 240 PdG-~llvtPag~~~~g~~~~~n~tYvfsrk~l~---rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 240 PDG-SLLVTPAGLFKVGGGVFRNTSYVFSRKDLK---RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred CCC-cEEEcccceeeeCCceeeceeEeecccccc---CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEE
Confidence 988 57776542 12 23455433321 22333334444555555544 12234
Q ss_pred EEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380 430 ATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS 495 (536)
Q Consensus 430 ~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~ 495 (536)
+.++ .+.|.|||..+..++..+... +......++|++||.+|++.|.||...+..+...++
T Consensus 316 aiAt-~~svyvydtq~~~P~~~v~ni----hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 316 AIAT-KNSVYVYDTQTLEPLAVVDNI----HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred EEee-cceEEEeccccccceEEEeee----eeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 4555 456999999888877766321 122344588999999999999999988877766544
No 194
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=1.1e-16 Score=163.63 Aligned_cols=236 Identities=13% Similarity=0.079 Sum_probs=163.8
Q ss_pred CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC---CeEEEEECCCCeEEEeecCCCceeEEEec
Q 009380 257 LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---GLIRLMDAEKEVFDLVYSSEYAVFSLSQQ 333 (536)
Q Consensus 257 dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---g~I~vwd~~~~~~~~~~~~~~~i~~l~~~ 333 (536)
+..|.+||.+. .....+..|...+.+..|+|+| +.|+.++.+ ..|++||+.++....+....+....++|+
T Consensus 183 ~~~i~i~d~dg-----~~~~~lt~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDG-----FNQFIVNRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFS 256 (429)
T ss_pred eEEEEEECCCC-----CCceEeccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeEC
Confidence 46899999874 3345667788889999999999 888877654 36999999988655554444455678999
Q ss_pred CCCCCEEEEE-ECCCeEEE--EECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee
Q 009380 334 PNNVNTLYFG-EGQGGLNI--WDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV 410 (536)
Q Consensus 334 ~~~~~~l~~g-~~dg~i~i--~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~ 410 (536)
|++ +.|+++ ..+|.+.| ||+.++. ...+..+...+....|+|++..+++++..+|...||++..... ....
T Consensus 257 PDG-~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~----~~~~ 330 (429)
T PRK01742 257 PDG-SRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG----GASL 330 (429)
T ss_pred CCC-CEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC----CeEE
Confidence 998 555554 56776555 4665554 4555667777889999999865555666678889998765321 1122
Q ss_pred ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380 411 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 411 ~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
..+.. ..+.|+|+|++|+.++.++ +.+||+.+++........ . ...+.|+|+|++|+.++.++.+.+|.+
T Consensus 331 l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~-----~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 331 VGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--L-----DESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred ecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--C-----CCCceECCCCCEEEEEEcCCCceEEEE
Confidence 23333 4578999999998888765 666999877643322111 1 123679999999999999988887775
Q ss_pred --CccccceeccCCceeeeeeeEeecCC
Q 009380 491 --AQRRSVATLQSPYISAIPCRFHAHPH 516 (536)
Q Consensus 491 --~~~~~~~~l~~~~~~~~~~~~~~~p~ 516 (536)
.++..+..+..+.... ...+|+|.
T Consensus 401 ~~~~G~~~~~l~~~~g~~--~~p~wsp~ 426 (429)
T PRK01742 401 VSADGRFKARLPGSDGQV--KFPAWSPY 426 (429)
T ss_pred EECCCCceEEccCCCCCC--CCcccCCC
Confidence 3566777776544322 35778874
No 195
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.5e-15 Score=154.60 Aligned_cols=312 Identities=13% Similarity=0.141 Sum_probs=213.0
Q ss_pred eEEecccccC-----ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEE
Q 009380 216 CVDIGSLTLK-----PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVT 290 (536)
Q Consensus 216 ~v~lw~~~~~-----~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~ 290 (536)
.+.+|..... ...+...|.-.++++++|| +++++|+|..||.|.+|.--...........+.=|...|.+++|
T Consensus 182 ~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp--n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f 259 (792)
T KOG1963|consen 182 KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP--NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF 259 (792)
T ss_pred eEEEEEecccceeeccchhhhhhcccceeEEecc--ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEE
Confidence 4556655331 2233345666799999999 99999999999999999755422224556677779999999999
Q ss_pred ecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec-----
Q 009380 291 QQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL----- 365 (536)
Q Consensus 291 ~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----- 365 (536)
+++| .+|++|+..|.+.+|.+.+++...+-.-.++|..+.++|++ .+.++...|..|.+....+.....++.+
T Consensus 260 S~~G-~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~ 337 (792)
T KOG1963|consen 260 SSDG-AYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPT 337 (792)
T ss_pred ecCC-ceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCC
Confidence 9999 99999999999999999999866666778999999999998 7888888899999998766544333321
Q ss_pred ------cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc-eee------cccCceeEEEEccCCCeEEEE
Q 009380 366 ------HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM-KVL------SHKRAVHSAYFSPSGSSLATT 432 (536)
Q Consensus 366 ------h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~-~~~------~~~~~v~~l~~sp~g~~l~t~ 432 (536)
..+-.+.++++|. .+.++-.+..|.|.+||+-+.+....... ... .+.-.++.++.+-.|.+++|.
T Consensus 338 ~~~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~ 416 (792)
T KOG1963|consen 338 PSTKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATL 416 (792)
T ss_pred ccccccccccceeEEEcCC-CCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEe
Confidence 2344678899993 36788888899999999988542110000 000 123457788888889999987
Q ss_pred eC--------CC--cEEEEeCCCCCcceEE--eccCCCCceeeeeEEEEcCC-CCEEEEEcCCCcEEEEcCCccccceec
Q 009380 433 SF--------DD--TIGIWSGVNFENTSMI--HHNNQTGRWISSFRAIWGWD-DSCVFIGNMTRTVEVISPAQRRSVATL 499 (536)
Q Consensus 433 s~--------dg--~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~-g~~l~~gs~dg~I~v~d~~~~~~~~~l 499 (536)
-. || .+++|-.........+ ....+++......+. .++. ...+++++.||.++||-+...+.+..-
T Consensus 417 E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~-~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~ 495 (792)
T KOG1963|consen 417 EARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIF-LNPTRSVRCVTASVDGDFKIWVFTDDSNIYKK 495 (792)
T ss_pred eeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEE-ecCcccceeEEeccCCeEEEEEEecccccCcC
Confidence 42 33 4788876544433333 223344433333222 2333 337889999999999998544332221
Q ss_pred c------C---CceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 500 Q------S---PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 500 ~------~---~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
. . .|...+ .+.+|+- || -+++.+.|+.|.+||.+
T Consensus 496 ~s~W~c~~i~sy~k~~i-~a~~fs~-dG-slla~s~~~~Itiwd~~ 538 (792)
T KOG1963|consen 496 SSNWTCKAIGSYHKTPI-TALCFSQ-DG-SLLAVSFDDTITIWDYD 538 (792)
T ss_pred ccceEEeeeeccccCcc-cchhhcC-CC-cEEEEecCCEEEEecCC
Confidence 1 1 112222 2345553 54 67777788999999853
No 196
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.9e-16 Score=145.44 Aligned_cols=295 Identities=12% Similarity=0.131 Sum_probs=208.7
Q ss_pred cccceecccccceeeeecCCCCcccccccccccccccccccceEEeccccc-------Cccccc-cccCCceEEEEEEec
Q 009380 174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL-------KPENIA-RIMPGRITQMKFLPC 245 (536)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~-------~~~~~~-~~~~~~I~~v~~~p~ 245 (536)
-.++-+.+|..+|.+++|+..++.|+ +++.|..+.||++.. +|..+. ..|...|.|++|.-
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~----------SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~- 115 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLA----------SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL- 115 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEe----------ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-
Confidence 34566789999999999999999999 458888999999732 333332 33568999999998
Q ss_pred CCccEEEEEeCCCcEEEEECCCCCCCCCceEEec--cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC----eEEE
Q 009380 246 SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR--THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE----VFDL 319 (536)
Q Consensus 246 ~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~----~~~~ 319 (536)
...+|.+|..+++|.+.|+.+ .+.+..+. ...+.|..+..+|.. +.|++.+.++.|.+||.+.. .+..
T Consensus 116 -~N~~~~SG~~~~~VI~HDiEt----~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~ 189 (609)
T KOG4227|consen 116 -ENRFLYSGERWGTVIKHDIET----KQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVL 189 (609)
T ss_pred -CCeeEecCCCcceeEeeeccc----ceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceee
Confidence 889999999999999999997 33343332 234589999999997 99999999999999999764 3444
Q ss_pred eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEe---cc---CCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380 320 VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWL---LH---EARINTIDFNPRNPNIMATSSTDGTA 392 (536)
Q Consensus 320 ~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~---~h---~~~i~~i~~~p~~~~~l~s~s~dg~i 392 (536)
.........++.|+|..+.+|++.+..+.+.+||++.... +.... +. ...-.++.|+|.|. .|++--....-
T Consensus 190 ~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~-Q~msiRR~~~P 268 (609)
T KOG4227|consen 190 PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN-QFMSIRRGKCP 268 (609)
T ss_pred ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCC-eehhhhccCCC
Confidence 4456678889999999999999999999999999987643 32221 11 12235788999884 55554444455
Q ss_pred EEEeCCCCCCCCCCcceeeccc-------CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc---eEEeccC------
Q 009380 393 CIWDLRSMATDKPEPMKVLSHK-------RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT---SMIHHNN------ 456 (536)
Q Consensus 393 ~iwdl~~~~~~~~~~~~~~~~~-------~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~---~~~~~~~------ 456 (536)
.+||+-+.. ..+-...|. ..+.+++|.-+.. +++|+.+-.|++|.+..-... ..+.|..
T Consensus 269 ~~~D~~S~R----~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~ 343 (609)
T KOG4227|consen 269 LYFDFISQR----CFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE 343 (609)
T ss_pred EEeeeeccc----ceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence 678877621 111112232 3567788876554 999999999999987522111 1111100
Q ss_pred ---------CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380 457 ---------QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA 491 (536)
Q Consensus 457 ---------~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~ 491 (536)
..++....-.+.|+|...+|++.+-.+.+++|...
T Consensus 344 ~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 344 IFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred heecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 01111112236789998889999999999999753
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=7.6e-16 Score=139.54 Aligned_cols=211 Identities=16% Similarity=0.183 Sum_probs=169.4
Q ss_pred cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM 310 (536)
Q Consensus 231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw 310 (536)
+....+|+|.+|++ |+..+|.+-.+..|.||....... .+..++++.|...|++|+|+|.. +.|++|+.|..-+||
T Consensus 7 ~~~~~pitchAwn~--drt~iAv~~~~~evhiy~~~~~~~-w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw 82 (361)
T KOG1523|consen 7 HRLLEPITCHAWNS--DRTQIAVSPNNHEVHIYSMLGADL-WEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVW 82 (361)
T ss_pred eeccCceeeeeecC--CCceEEeccCCceEEEEEecCCCC-ceeceehhhhCcceeEEeecCCC-CceeEccCCCCcccc
Confidence 33467899999999 999999999999999999876432 56788999999999999999998 999999999999999
Q ss_pred EC-CCCeE---EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc--c--eeEeccCCCeEEEEEecCCCCE
Q 009380 311 DA-EKEVF---DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS--A--TEWLLHEARINTIDFNPRNPNI 382 (536)
Q Consensus 311 d~-~~~~~---~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~--~--~~~~~h~~~i~~i~~~p~~~~~ 382 (536)
.. ..++. ..+..++...+++.|+|.. +.|++|+....|.||-++..+- + +.-..+...|++++|+|.+ -+
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VL 160 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VL 160 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-ce
Confidence 98 44443 3456788999999999998 8999999999999998775432 1 1223577889999999965 79
Q ss_pred EEEEeCCCcEEEEeCC-----CCCC--------CCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 009380 383 MATSSTDGTACIWDLR-----SMAT--------DKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE 447 (536)
Q Consensus 383 l~s~s~dg~i~iwdl~-----~~~~--------~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~ 447 (536)
+++|+.|+.++||..- .... ....++... ...+.|..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus 161 laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 9999999999998632 1000 000111112 456789999999999999999999999999976654
No 198
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.73 E-value=1.6e-16 Score=152.68 Aligned_cols=268 Identities=15% Similarity=0.169 Sum_probs=183.9
Q ss_pred cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC-CCceEEeccCCCCEEEEEEe-cCCCCEEEEEECCCeEEEE
Q 009380 233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE-DNGIYLFRTHLGPISGIVTQ-QYCLSKIFTSCYDGLIRLM 310 (536)
Q Consensus 233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~~-~~~~~~l~s~s~dg~I~vw 310 (536)
|...|.|+.|+. +...+.+++.+..+.-|++.....+ ....-.+......+....-- ..+...|+.++.||.+.+.
T Consensus 13 ~~e~vc~v~w~~--~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 13 NSEKVCCVDWSS--NEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred cceeEEeecccc--cceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 455667999987 5566666665544455555542110 00000110000001000000 1123678999999999998
Q ss_pred ECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380 311 DAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG 390 (536)
Q Consensus 311 d~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg 390 (536)
+-.......+..|.+.+.+-.|+|+| .-|++++.||.|++|. ++|-...++.....+|.|++|.|+..+++.+.+ +
T Consensus 91 ~k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~ 166 (737)
T KOG1524|consen 91 NKSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--G 166 (737)
T ss_pred cccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC--C
Confidence 87665555667899999999999999 7899999999999998 566666666667889999999998877777765 4
Q ss_pred cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEc
Q 009380 391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG 470 (536)
Q Consensus 391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s 470 (536)
.+.|=.+.. +..++....|.+-|.++.|++..+++++|+.|-..+|||... ..+..- ......+++ ++|.
T Consensus 167 h~~IKpL~~----n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S---~~~ey~ITS--va~n 236 (737)
T KOG1524|consen 167 HISIKPLAA----NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTS---AAEEYAITS--VAFN 236 (737)
T ss_pred eEEEeeccc----ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccccC---Chhccceee--eeec
Confidence 566655555 237788889999999999999999999999999999999643 333222 122223444 8899
Q ss_pred CCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEE
Q 009380 471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 532 (536)
Q Consensus 471 ~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~i 532 (536)
|+ ..++.++.+ +++ +.....+.+ ..++|+| ||..+++|+..|.|.+
T Consensus 237 pd-~~~~v~S~n-t~R------------~~~p~~GSi-fnlsWS~-DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 237 PE-KDYLLWSYN-TAR------------FSSPRVGSI-FNLSWSA-DGTQATCGTSTGQLIV 282 (737)
T ss_pred cc-cceeeeeee-eee------------ecCCCccce-EEEEEcC-CCceeeccccCceEEE
Confidence 99 667777653 344 333333333 5689999 7899999999998764
No 199
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=8.4e-18 Score=169.02 Aligned_cols=242 Identities=20% Similarity=0.234 Sum_probs=189.5
Q ss_pred CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEE
Q 009380 273 NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNI 351 (536)
Q Consensus 273 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i 351 (536)
+.+..+.+|...|.|+.|...| .++++|+.|..++||..+++.+. ...+|.+.|+.++.+.++ .++++++.|..|++
T Consensus 181 k~ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCceEEE
Confidence 3445677999999999999999 99999999999999999987654 556899999999999887 78899999999999
Q ss_pred EECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC-CCCCcceeecccCceeEEEEccCCCeEE
Q 009380 352 WDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT-DKPEPMKVLSHKRAVHSAYFSPSGSSLA 430 (536)
Q Consensus 352 ~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~-~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 430 (536)
|-+.++.++..+.+|++.|++|+|+|- .+.+.||++++||.+-... ..+.+... .....+.++.|..++..++
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~-~~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKF-TEKDLVDSILFENNGDRFL 332 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCc-ccccceeeeeccccccccc
Confidence 999999999999999999999999993 3777899999999982110 01111111 2346778888988999999
Q ss_pred EEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCC-CCEEEEEcCCCcEEEEcCCccccceeccCCceeeeee
Q 009380 431 TTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD-DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPC 509 (536)
Q Consensus 431 t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~ 509 (536)
|++.|+.-..|.+......... .+. +.++.+ ..+.+++-.+-.+.+|++.+|..++.+.+|.....
T Consensus 333 Tgs~d~ea~n~e~~~l~~~~~~--------lif---~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~y-- 399 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLAWRSNL--------LIF---VTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVY-- 399 (1113)
T ss_pred cccCCcccccchhhHhhhhccc--------eEE---EeccccccccceeeeeeeEeeeeecccchhhhhhccccccee--
Confidence 9999999888876432111100 000 111212 24566666778899999999988888877655544
Q ss_pred eEeecCCCCCEEEEEccCCeEEEEec
Q 009380 510 RFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 510 ~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
++.+||.+.....+++.||...|||+
T Consensus 400 vLd~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 400 VLDVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred eeeecCCCcHhhhhccCCCceEeeec
Confidence 68999999888899999999999996
No 200
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.5e-16 Score=153.33 Aligned_cols=218 Identities=16% Similarity=0.235 Sum_probs=164.8
Q ss_pred cCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEe-ccCCCCEEEEEEecCC-CCEEEEE
Q 009380 224 LKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLF-RTHLGPISGIVTQQYC-LSKIFTS 301 (536)
Q Consensus 224 ~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~-~~~l~s~ 301 (536)
+..+..+.+|.+.|+|+.|+. +|.+|++|+.|-.+.|||.-. .+.++.+ .+|...|.++.|.|.. ..++++|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~--dG~lL~SGSDD~r~ivWd~~~----~KllhsI~TgHtaNIFsvKFvP~tnnriv~sg 113 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNA--DGELLASGSDDTRLIVWDPFE----YKLLHSISTGHTANIFSVKFVPYTNNRIVLSG 113 (758)
T ss_pred cchhhhhccccceecceeecC--CCCEEeecCCcceEEeecchh----cceeeeeecccccceeEEeeeccCCCeEEEec
Confidence 444566899999999999999 999999999999999999985 5555544 5899999999999963 3678999
Q ss_pred ECCCeEEEEECCCCe-----------EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccc----------
Q 009380 302 CYDGLIRLMDAEKEV-----------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA---------- 360 (536)
Q Consensus 302 s~dg~I~vwd~~~~~-----------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~---------- 360 (536)
+.|..|+++|+...+ ......|...|..|+..|++++.+.+++.||+|+-||++.....
T Consensus 114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred cCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence 999999999998421 11223467788899999999999999999999999999964221
Q ss_pred eeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC--------CCC-----Ccceee--ccc-----------
Q 009380 361 TEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT--------DKP-----EPMKVL--SHK----------- 414 (536)
Q Consensus 361 ~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~--------~~~-----~~~~~~--~~~----------- 414 (536)
..+....-...|+..+|..+++|++|+.|-..++||.|.... ... .+...+ +|-
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI 273 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence 111122235678999999999999999999999999543210 000 011111 221
Q ss_pred CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 009380 415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE 447 (536)
Q Consensus 415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~ 447 (536)
..++.+.|+|+|.-|++.-....|++||+...+
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 125778999999877776666679999986544
No 201
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=6.8e-15 Score=149.91 Aligned_cols=279 Identities=14% Similarity=0.194 Sum_probs=200.2
Q ss_pred EEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC--CEEEEEECCCeEEEEECCCCeE
Q 009380 240 MKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL--SKIFTSCYDGLIRLMDAEKEVF 317 (536)
Q Consensus 240 v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~~l~s~s~dg~I~vwd~~~~~~ 317 (536)
-.|++ |+++++.... ..|.||...+ +.++..+..|..++..+.+.|... .++++++.||.|++||...+..
T Consensus 22 avfSn--D~k~l~~~~~-~~V~VyS~~T----g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 22 AVFSN--DAKFLFLCTG-NFVKVYSTAT----GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL 94 (792)
T ss_pred ccccc--CCcEEEEeeC-CEEEEEecch----HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence 35777 8888877664 5899999998 788999999999999999998875 4678999999999999987765
Q ss_pred EEeecCCCceeE-----------------------------------------------------------EEecCCCCC
Q 009380 318 DLVYSSEYAVFS-----------------------------------------------------------LSQQPNNVN 338 (536)
Q Consensus 318 ~~~~~~~~~i~~-----------------------------------------------------------l~~~~~~~~ 338 (536)
...+....++.. +.+++.+ .
T Consensus 95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g-e 173 (792)
T KOG1963|consen 95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG-E 173 (792)
T ss_pred EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc-e
Confidence 444433222222 2222222 1
Q ss_pred EEEEEECCCeEEEEECCCCccc---ee-EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc
Q 009380 339 TLYFGEGQGGLNIWDVRSRKSA---TE-WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK 414 (536)
Q Consensus 339 ~l~~g~~dg~i~i~d~~~~~~~---~~-~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~ 414 (536)
+.+ ...+..+.+|+...+... +. -..|...+++++++|.+ +++|+|..||.|.+|.--..+........+.=|.
T Consensus 174 ~~~-i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~ 251 (792)
T KOG1963|consen 174 FKG-IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH 251 (792)
T ss_pred EEE-EEEeeeEEEEEecccceeeccchhhhhhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEecc
Confidence 222 222335666766653310 00 01466778999999976 8999999999999996443222233444555689
Q ss_pred CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc
Q 009380 415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR 494 (536)
Q Consensus 415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~ 494 (536)
..|++++|+++|.+|++|+..+.+.+|.+.+++... ++ ..+..+ +.+.++||+.+.+....|+.|.+....+..
T Consensus 252 ~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf-LP---RLgs~I--~~i~vS~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF-LP---RLGSPI--LHIVVSPDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred cccceeEEecCCceEeecccceEEEEEeecCCCccc-cc---ccCCee--EEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence 999999999999999999999999999999888333 22 222233 337789999999999999999999887765
Q ss_pred cceeccCCc---------eeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 495 SVATLQSPY---------ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 495 ~~~~l~~~~---------~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
...++.+.. .......+++.| ..+.++-.+..|.|.+||+
T Consensus 326 ~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 326 IKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDL 374 (792)
T ss_pred hhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEec
Confidence 555444321 123345677888 4478889999999999986
No 202
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=3.1e-16 Score=138.33 Aligned_cols=288 Identities=12% Similarity=0.112 Sum_probs=194.8
Q ss_pred cceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-ccccc-ccCCceEEEEEEecCCccEEEE
Q 009380 176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIAR-IMPGRITQMKFLPCSDVRMVVA 253 (536)
Q Consensus 176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~-~~~~~I~~v~~~p~~~~~~l~t 253 (536)
.+.+++|...|.++.|...++++.. ...|.|.+|.+.... ....+ .+...|+.+.--| + ..+.+
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~rL~sg-----------~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p--~-d~l~t 72 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANERLMSG-----------LSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP--N-DSLDT 72 (323)
T ss_pred eeEeccccchheehhhccchhhhcc-----------cccceEEEEEeecCccchhhhhhccceeeceeecC--C-cchhh
Confidence 3567799999999999999996653 456789999985543 23344 5688899999988 5 67889
Q ss_pred EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC-----C---CEEEEEECCC-eEEEEECCCCeEEEee---
Q 009380 254 GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC-----L---SKIFTSCYDG-LIRLMDAEKEVFDLVY--- 321 (536)
Q Consensus 254 g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-----~---~~l~s~s~dg-~I~vwd~~~~~~~~~~--- 321 (536)
-+.|+.+.+|++... . ....|+-.++++.|.+.. . ..++.=+... .+.+-|........+.
T Consensus 73 qgRd~~L~lw~ia~s----~---~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~ 145 (323)
T KOG0322|consen 73 QGRDPLLILWTIAYS----A---FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDS 145 (323)
T ss_pred cCCCceEEEEEccCc----c---eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCch
Confidence 999999999999852 1 122344455555555431 0 0111111100 0122222211111111
Q ss_pred --cCCCceeEEEecCCCC--CEEEEEECCCeEEEEECCCC----------ccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380 322 --SSEYAVFSLSQQPNNV--NTLYFGEGQGGLNIWDVRSR----------KSATEWLLHEARINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 322 --~~~~~i~~l~~~~~~~--~~l~~g~~dg~i~i~d~~~~----------~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s 387 (536)
...+.++|..+..... -++++|..+|.|.+||+.++ +.......|..+|.++.+.+.- ..=++|+
T Consensus 146 ~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgg 224 (323)
T KOG0322|consen 146 ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGG 224 (323)
T ss_pred hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCC
Confidence 2235677776543322 25667889999999999987 3334445799999999998743 3446777
Q ss_pred CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEE
Q 009380 388 TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRA 467 (536)
Q Consensus 388 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (536)
.+..+..|.+......-+......-.+-.|..+..-||++.++|++.|+.|+||+.+++.++..+..+.. .+.++
T Consensus 225 a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-----gvn~v 299 (323)
T KOG0322|consen 225 ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-----GVNAV 299 (323)
T ss_pred ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-----ceeEE
Confidence 7778899988764221112222223456788999999999999999999999999999999988864432 23347
Q ss_pred EEcCCCCEEEEEcCCCcEEEEcC
Q 009380 468 IWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 468 ~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
+|+|+-..++++++|+.|.+|++
T Consensus 300 Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeCCCCchhhhccCCceEEeeec
Confidence 89999999999999999999986
No 203
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.9e-14 Score=132.43 Aligned_cols=272 Identities=12% Similarity=0.158 Sum_probs=180.5
Q ss_pred cccccceEEecccccCccccc-cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCC----------CceEEe
Q 009380 210 KIEVGSCVDIGSLTLKPENIA-RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDED----------NGIYLF 278 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~~~~~~~-~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~----------~~~~~~ 278 (536)
.+..|-.|++|+-......++ ......|+|++|-|. .+..|+.|.. +-|.||..+...... ..+...
T Consensus 115 va~nddvVriy~ksst~pt~Lks~sQrnvtclawRPl-saselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~ 192 (445)
T KOG2139|consen 115 VATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPL-SASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQD 192 (445)
T ss_pred hhccCcEEEEeccCCCCCceecchhhcceeEEEeccC-Ccceeeeeec-ceeEEEEcCcccccccccccccccchhheeC
Confidence 456677899998655433333 334678999999996 4567777776 569999887432111 123344
Q ss_pred ccCCCCEEEEEEecCCCCEEEEEEC-CCeEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC
Q 009380 279 RTHLGPISGIVTQQYCLSKIFTSCY-DGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS 356 (536)
Q Consensus 279 ~~h~~~V~~l~~~~~~~~~l~s~s~-dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~ 356 (536)
.+| .+|+++.|++|| ..+++++. |..|.|||..++....+. ..-+.++-+.|+|++ .+|++++-|+..++|+...
T Consensus 193 pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 193 PGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred CCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCC-CEEEEecccceeeeehhcc
Confidence 556 789999999999 88888886 578999999998776665 455788999999999 8999999999999997665
Q ss_pred CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC--CCC------Cc--------ceeec----ccCc
Q 009380 357 RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT--DKP------EP--------MKVLS----HKRA 416 (536)
Q Consensus 357 ~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~--~~~------~~--------~~~~~----~~~~ 416 (536)
......+....+.|..-+|+|+|..+|++++..- .+|.+.-... ... .. ..... ..+.
T Consensus 270 ~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cge 347 (445)
T KOG2139|consen 270 SWTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGE 347 (445)
T ss_pred cceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCc
Confidence 4444455555669999999999977777776444 4444332110 000 00 00011 2467
Q ss_pred eeEEEEccCCCeEEEEeCCC--------cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEc---CCCCEEEEEcCCCcE
Q 009380 417 VHSAYFSPSGSSLATTSFDD--------TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG---WDDSCVFIGNMTRTV 485 (536)
Q Consensus 417 v~~l~~sp~g~~l~t~s~dg--------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~g~~l~~gs~dg~I 485 (536)
+.+++|+|.|.+|++.-..+ .|.+||.+..-...........+..-.. +.|+ .++.+|.++=..|.+
T Consensus 348 aq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~--IsF~pl~n~g~lLsiaWsTGri 425 (445)
T KOG2139|consen 348 AQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAY--ISFGPLKNEGRLLSIAWSTGRI 425 (445)
T ss_pred cceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCce--EEeeecccCCcEEEEEeccCce
Confidence 89999999999999976543 3777887654444333211111111111 2233 356677777666777
Q ss_pred EEEcC
Q 009380 486 EVISP 490 (536)
Q Consensus 486 ~v~d~ 490 (536)
.-|++
T Consensus 426 q~ypl 430 (445)
T KOG2139|consen 426 QRYPL 430 (445)
T ss_pred Eeeee
Confidence 76654
No 204
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.7e-16 Score=151.01 Aligned_cols=308 Identities=13% Similarity=0.140 Sum_probs=229.7
Q ss_pred ccccccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc--cccccccCCceEEEEEEecC
Q 009380 169 ACKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP--ENIARIMPGRITQMKFLPCS 246 (536)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~--~~~~~~~~~~I~~v~~~p~~ 246 (536)
.++++.+...|.+|..+|..+.|...|..++ +++.|-.+.+||+.... .....+|...|....|.|..
T Consensus 128 ~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~----------SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s 197 (559)
T KOG1334|consen 128 FVQRLRLQKKLNKHKGCVNTVHFNQRGDVLA----------SGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS 197 (559)
T ss_pred HHHHhhhhhcccCCCCccceeeecccCceee----------ccCccceEEeehhhccCcccccccccccchhhhhccCCC
Confidence 3457888899999999999999999999999 45778899999985432 23456788899999999987
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee----c
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY----S 322 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~----~ 322 (536)
+..-|++++.||+|++=.+..... ......+..|.++|.-++.-|+.+..|++++.|+.+.-+|++.+.....+ .
T Consensus 198 ~d~ti~~~s~dgqvr~s~i~~t~~-~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~ 276 (559)
T KOG1334|consen 198 GDRTIVTSSRDGQVRVSEILETGY-VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREA 276 (559)
T ss_pred CCcCceeccccCceeeeeeccccc-eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeecc
Confidence 778899999999999988765321 23356677899999999999999999999999999999999876433222 2
Q ss_pred CCC---ceeEEEecCCCCCEEEEEECCCeEEEEECCCCc------cceeEec------cCCCeEEEEEecCCCCEEEEEe
Q 009380 323 SEY---AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK------SATEWLL------HEARINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 323 ~~~---~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~------~~~~~~~------h~~~i~~i~~~p~~~~~l~s~s 387 (536)
+.. ...+++..|.+.+.+++|+.|-.+++||.+.-. .+..+.. ..-.|+++.|+.++..+|++-
T Consensus 277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY- 355 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY- 355 (559)
T ss_pred CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee-
Confidence 233 578899999998899999999999999987532 1233322 234689999998776555555
Q ss_pred CCCcEEEEeCCCCCCCC--------CCcce-eecccC--ceeEEEE-ccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc
Q 009380 388 TDGTACIWDLRSMATDK--------PEPMK-VLSHKR--AVHSAYF-SPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN 455 (536)
Q Consensus 388 ~dg~i~iwdl~~~~~~~--------~~~~~-~~~~~~--~v~~l~~-sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~ 455 (536)
.|-.|+++.-..+.... ..... ..+|.. .|..+-| -|...|+++|+.-|.|.||+-.+++.+..+...
T Consensus 356 nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD 435 (559)
T KOG1334|consen 356 NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD 435 (559)
T ss_pred cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc
Confidence 47789999543332211 11112 346654 4666665 467889999999999999999888877666433
Q ss_pred CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 456 NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 456 ~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
.. .+.+ +.-+|--..||+.+-|..|+||...+.
T Consensus 436 r~---VVNC--LEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 436 RH---VVNC--LEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred cc---eEec--cCCCCCCchhhccCCccceeeecCCcc
Confidence 32 2333 334677778999999999999987544
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=3.3e-15 Score=152.63 Aligned_cols=221 Identities=15% Similarity=0.085 Sum_probs=151.4
Q ss_pred cceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC---CcEEEEECCCCCCCCCceEEeccCCCCEEEEEE
Q 009380 214 GSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL---GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVT 290 (536)
Q Consensus 214 dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~ 290 (536)
+..|.+||.+......+..|...+.+.+|+| ||+.|+..+.+ ..|++||+.++. ...+..+.+| ...++|
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSP--DG~~la~~s~~~~~~~i~i~dl~tg~--~~~l~~~~g~---~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSP--DGSKLAYVSFENKKSQLVVHDLRSGA--RKVVASFRGH---NGAPAF 255 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcC--CCCEEEEEEecCCCcEEEEEeCCCCc--eEEEecCCCc---cCceeE
Confidence 4689999976554444566778899999999 99999887654 369999998632 1233344444 346899
Q ss_pred ecCCCCEEEEE-ECCCeEEE--EECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc-cceeEecc
Q 009380 291 QQYCLSKIFTS-CYDGLIRL--MDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWLLH 366 (536)
Q Consensus 291 ~~~~~~~l~s~-s~dg~I~v--wd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h 366 (536)
+|++ +.|+.+ +.+|.+.| ||+.++....+..+...+.+..|+|++..+++++..+|...||++.... ....+ .+
T Consensus 256 SPDG-~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~ 333 (429)
T PRK01742 256 SPDG-SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG 333 (429)
T ss_pred CCCC-CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC
Confidence 9999 776665 46886555 4777777777767777788999999984444455567888888775432 22222 34
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC--
Q 009380 367 EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV-- 444 (536)
Q Consensus 367 ~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~-- 444 (536)
.. .+..|+|++ ..|+.++.++ +.+||+.++.. ..+..+ ....++.|+|+|++|+.++.++.+.+|++.
T Consensus 334 ~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~-----~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~ 403 (429)
T PRK01742 334 RG--YSAQISADG-KTLVMINGDN-VVKQDLTSGST-----EVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSA 403 (429)
T ss_pred CC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCe-----EEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 33 457899988 5666666554 66699987531 111111 133568899999999999999988888753
Q ss_pred CCCcceEEe
Q 009380 445 NFENTSMIH 453 (536)
Q Consensus 445 ~~~~~~~~~ 453 (536)
++.....+.
T Consensus 404 ~G~~~~~l~ 412 (429)
T PRK01742 404 DGRFKARLP 412 (429)
T ss_pred CCCceEEcc
Confidence 455555553
No 206
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=1.7e-16 Score=150.13 Aligned_cols=268 Identities=16% Similarity=0.206 Sum_probs=199.6
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE 315 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~ 315 (536)
.-+.+.|+. +|..|+.|+.-|.|..+|..+ ......+. -...|.++.|..+. ++|++ .....+.|||-..-
T Consensus 131 GPY~~~ytr--nGrhlllgGrKGHlAa~Dw~t----~~L~~Ei~-v~Etv~Dv~~LHne-q~~AV-AQK~y~yvYD~~Gt 201 (545)
T KOG1272|consen 131 GPYHLDYTR--NGRHLLLGGRKGHLAAFDWVT----KKLHFEIN-VMETVRDVTFLHNE-QFFAV-AQKKYVYVYDNNGT 201 (545)
T ss_pred CCeeeeecC--CccEEEecCCccceeeeeccc----ceeeeeee-hhhhhhhhhhhcch-HHHHh-hhhceEEEecCCCc
Confidence 457788988 999999999999999999997 44444443 45678999998775 55554 45778999998766
Q ss_pred eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380 316 VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIW 395 (536)
Q Consensus 316 ~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw 395 (536)
++..+.. ...|..+.|.|.. .+|++++..|.+.--|+.+|+.+..+..-.+.+..++-+|-+ -++-+|...|+|.+|
T Consensus 202 ElHClk~-~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 202 ELHCLKR-HIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLW 278 (545)
T ss_pred EEeehhh-cCchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEec
Confidence 6555443 4678999999987 788888999999999999999999998888999999999977 589999999999999
Q ss_pred eCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCE
Q 009380 396 DLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC 475 (536)
Q Consensus 396 dl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 475 (536)
..... ..+..+..|.++|.+|++.++|.|++|++.|..++|||+++...+.++....+. .. +++|..| +
T Consensus 279 SP~sk----ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a----~~--ls~Sqkg-l 347 (545)
T KOG1272|consen 279 SPNSK----EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPA----SN--LSLSQKG-L 347 (545)
T ss_pred CCCCc----chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCc----cc--ccccccc-c
Confidence 98873 467788899999999999999999999999999999999998877766542211 11 3355443 4
Q ss_pred EEEEcCCCcEEEEcCCcc---ccceeccCCceeeeeeeEeecCCCCCEEEEEccCC
Q 009380 476 VFIGNMTRTVEVISPAQR---RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG 528 (536)
Q Consensus 476 l~~gs~dg~I~v~d~~~~---~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg 528 (536)
|+++ ....|.||.-... ..-..+..|........+.|.|.. +.|-.|-.-|
T Consensus 348 LA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~E-DvLGIGH~~G 401 (545)
T KOG1272|consen 348 LALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYE-DVLGIGHAGG 401 (545)
T ss_pred eeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHH-HeeeccccCC
Confidence 4444 4457999953211 111122223222233466777754 5555554433
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=5.3e-15 Score=139.05 Aligned_cols=199 Identities=16% Similarity=0.227 Sum_probs=148.1
Q ss_pred eEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380 328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407 (536)
Q Consensus 328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~ 407 (536)
.+++|+.++ ..+++|+.||++++|+..+...+.....|...|.++.|+||+ .+|++-+.| ..+||+++++... ..
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~--a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAAL--AR 222 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchh--hh
Confidence 789999998 799999999999999988888777888899999999999988 799999989 8999999997311 11
Q ss_pred ceeecccCceeEEEEccCC---CeEEE--EeCCCcEEEEeCCCCCcceEEeccCCC--CceeeeeEEEEcCCCCEEEEEc
Q 009380 408 MKVLSHKRAVHSAYFSPSG---SSLAT--TSFDDTIGIWSGVNFENTSMIHHNNQT--GRWISSFRAIWGWDDSCVFIGN 480 (536)
Q Consensus 408 ~~~~~~~~~v~~l~~sp~g---~~l~t--~s~dg~I~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~g~~l~~gs 480 (536)
..-.........+.|+.++ .+++. ...-+.|+.||+..+..-..+...... ...+++ +..+.+|++++.|+
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSs--l~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISS--LAVSDDGKFLALGT 300 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCccee--EEEcCCCcEEEEec
Confidence 1112344566778888766 33322 234456777776544332111111111 112444 55699999999999
Q ss_pred CCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 481 MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 481 ~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
+||.|-|++..+.+.++.++..|...+ +.+.|+| +.+++++.+.|....|..+
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~aH~~~V-T~ltF~P-dsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKEAHLGFV-TGLTFSP-DSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred cCCcEEEEEeceeeeeEeehhhheeee-eeEEEcC-CcCcccccccCCceeEEEE
Confidence 999999999999988888887777755 7899999 5689999998888887654
No 208
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=9.1e-15 Score=127.61 Aligned_cols=231 Identities=16% Similarity=0.185 Sum_probs=165.5
Q ss_pred CEEEEEEecCCCCEEEEEECCCeEEEEECCC---------C--eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEE
Q 009380 284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEK---------E--VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIW 352 (536)
Q Consensus 284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~---------~--~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~ 352 (536)
.|.+-+|+|.+ ++|++|..+|.|.++.+.. + .......|+++|..++|+. .+|++|+. |.|+-|
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw 86 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGW 86 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEEEe
Confidence 35566789998 9999999999999999864 1 2233457999999999983 35666654 999999
Q ss_pred ECCCCcc------ceeEe--cc-----CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeE
Q 009380 353 DVRSRKS------ATEWL--LH-----EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419 (536)
Q Consensus 353 d~~~~~~------~~~~~--~h-----~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~ 419 (536)
..+.... +.... .| --.|+++...|....+ ++++.|+.++.||+.+++ ....+.+|...|.+
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi-~~AgGD~~~y~~dlE~G~----i~r~~rGHtDYvH~ 161 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI-LFAGGDGVIYQVDLEDGR----IQREYRGHTDYVHS 161 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE-EEecCCeEEEEEEecCCE----EEEEEcCCcceeee
Confidence 8764321 11111 12 2358999999976444 445579999999999974 55566799999999
Q ss_pred EEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc-------CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380 420 AYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN-------NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 420 l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~ 492 (536)
+.--.....+++|+.||+++|||.++.+.+.++... ...+.|+..+ .-+..++++|+. ..+.+|++..
T Consensus 162 vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal----a~~edWlvCGgG-p~lslwhLrs 236 (325)
T KOG0649|consen 162 VVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL----AVNEDWLVCGGG-PKLSLWHLRS 236 (325)
T ss_pred eeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE----eccCceEEecCC-CceeEEeccC
Confidence 998555556999999999999999999988887422 1234555543 346678888864 4699999999
Q ss_pred cccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 493 RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 493 ~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
.++...+.-..... .+.|. .+.+++++....|.-|.+
T Consensus 237 se~t~vfpipa~v~---~v~F~---~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 237 SESTCVFPIPARVH---LVDFV---DDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred CCceEEEeccccee---Eeeee---cceEEEeccccceeeeee
Confidence 88877765322111 23342 367778887777777764
No 209
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=4.6e-14 Score=129.99 Aligned_cols=285 Identities=12% Similarity=0.128 Sum_probs=184.1
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA 312 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~ 312 (536)
+-.+..++||+ .-.-+|++..|-.|++|+-.. .+...++ .....|+|++|-|.+..-|+.|+..| |++|..
T Consensus 98 ~~dlr~~aWhq--H~~~fava~nddvVriy~kss-----t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~ 169 (445)
T KOG2139|consen 98 EIDLRGVAWHQ--HIIAFAVATNDDVVRIYDKSS-----TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSD 169 (445)
T ss_pred hcceeeEeech--hhhhhhhhccCcEEEEeccCC-----CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEc
Confidence 44577899999 666788899999999999875 2222232 34567999999999878888888666 899987
Q ss_pred CCC----eE--------EEe--ecCCCceeEEEecCCCCCEEEEEE-CCCeEEEEECCCCccceeEeccCCCeEEEEEec
Q 009380 313 EKE----VF--------DLV--YSSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSRKSATEWLLHEARINTIDFNP 377 (536)
Q Consensus 313 ~~~----~~--------~~~--~~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p 377 (536)
... .. ..+ .....+|++|.|.+++ ..+++++ .|..|.|||..++..+.-.....+.+.-+.|+|
T Consensus 170 s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP 248 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP 248 (445)
T ss_pred CcccccccccccccccchhheeCCCCceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC
Confidence 531 11 111 1234789999999998 6666665 567899999999877655444567788999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcce-------
Q 009380 378 RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTS------- 450 (536)
Q Consensus 378 ~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~------- 450 (536)
|+ .+|.++.-|+..++|...... ......-..+.|...+|+|+|..|+..+. |.-++|.+.-.....
T Consensus 249 dg-d~lfaAt~davfrlw~e~q~w----t~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~ 322 (445)
T KOG2139|consen 249 DG-DVLFAATCDAVFRLWQENQSW----TKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQS 322 (445)
T ss_pred CC-CEEEEecccceeeeehhcccc----eecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCccc
Confidence 98 678888889999999655421 12222234459999999999987766553 334555543111000
Q ss_pred ----EEec-----cCCCCc---eeeeeEEEEcCCCCEEEEEcCC--------CcEEEEcCCccccceec-----cCCcee
Q 009380 451 ----MIHH-----NNQTGR---WISSFRAIWGWDDSCVFIGNMT--------RTVEVISPAQRRSVATL-----QSPYIS 505 (536)
Q Consensus 451 ----~~~~-----~~~~~~---~~~~~~~~~s~~g~~l~~gs~d--------g~I~v~d~~~~~~~~~l-----~~~~~~ 505 (536)
.+.. ....+. .--.-+++|+|.|.+|++.-.. ..|.+||....-.+.-. .+.+-.
T Consensus 323 ~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~ 402 (445)
T KOG2139|consen 323 IKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPA 402 (445)
T ss_pred ceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCc
Confidence 0000 001110 0011247899999999986443 23667776654332221 222311
Q ss_pred eeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 506 AIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 506 ~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
. +.|.++-+++.+|..+=+.|.+.-|.+
T Consensus 403 ~--IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 403 Y--ISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred e--EEeeecccCCcEEEEEeccCceEeeee
Confidence 1 234444456778888888888887764
No 210
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.3e-15 Score=146.92 Aligned_cols=224 Identities=16% Similarity=0.192 Sum_probs=164.7
Q ss_pred eEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe--ecCCCceeEEEecCCC-CCEEEEEECCCeEEE
Q 009380 275 IYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV--YSSEYAVFSLSQQPNN-VNTLYFGEGQGGLNI 351 (536)
Q Consensus 275 ~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~--~~~~~~i~~l~~~~~~-~~~l~~g~~dg~i~i 351 (536)
...+.+|++.|+|+.|+.+| .+|++||.|-.+.|||.-..+.... .+|...|.++.|-|.. ..++++|..|..|++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhccccceecceeecCCC-CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34678999999999999999 9999999999999999876655443 4788999999998853 357888999999999
Q ss_pred EECCC----------CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC------CcceeecccC
Q 009380 352 WDVRS----------RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP------EPMKVLSHKR 415 (536)
Q Consensus 352 ~d~~~----------~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~------~~~~~~~~~~ 415 (536)
||+.. ......+..|...|..|+-.|.+++.|.++++||+|+-+|+|....-.+ .+......--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99984 2335667789999999999999999999999999999999998432111 0111112234
Q ss_pred ceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCC--------C----------cceEEe--cc-CCCC---cee-eeeEEEE
Q 009380 416 AVHSAYFSP-SGSSLATTSFDDTIGIWSGVNF--------E----------NTSMIH--HN-NQTG---RWI-SSFRAIW 469 (536)
Q Consensus 416 ~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~--------~----------~~~~~~--~~-~~~~---~~~-~~~~~~~ 469 (536)
...++..+| +..+|++|+.|-..++||.+.. . ++..+. |. +..+ ..+ .+.-+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 567899999 5578999999999999994311 1 111111 11 1111 111 1233679
Q ss_pred cCCCCEEEEEcCCCcEEEEcCCccccceec
Q 009380 470 GWDDSCVFIGNMTRTVEVISPAQRRSVATL 499 (536)
Q Consensus 470 s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l 499 (536)
+|+|.-|++.-..-.|++||+..++....+
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 999987777655668999999887665443
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=1.1e-14 Score=152.75 Aligned_cols=263 Identities=13% Similarity=0.088 Sum_probs=179.6
Q ss_pred EECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC-------eEEEeec-CCCceeEEEecC
Q 009380 263 WNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE-------VFDLVYS-SEYAVFSLSQQP 334 (536)
Q Consensus 263 wd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~-------~~~~~~~-~~~~i~~l~~~~ 334 (536)
|+.. +..+..+..|...|..++.++....+|+|||.||+|++|+..+- .....+. ....+.++.+.+
T Consensus 1034 W~p~-----G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1034 WNPR-----GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred CCcc-----ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc
Confidence 5555 78888999999999999998876689999999999999998641 2233333 567889999988
Q ss_pred CCCCEEEEEECCCeEEEEECCCCcc-------ceeEeccC-CCe-EEEEEecCCC-CEEEEEeCCCcEEEEeCCCCCCCC
Q 009380 335 NNVNTLYFGEGQGGLNIWDVRSRKS-------ATEWLLHE-ARI-NTIDFNPRNP-NIMATSSTDGTACIWDLRSMATDK 404 (536)
Q Consensus 335 ~~~~~l~~g~~dg~i~i~d~~~~~~-------~~~~~~h~-~~i-~~i~~~p~~~-~~l~s~s~dg~i~iwdl~~~~~~~ 404 (536)
.+ +.+++++.||.|.+.++..... ......+. +.+ ..-+|..... ..++.+..-+.|..||+++.. .
T Consensus 1109 ~~-~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~--~ 1185 (1431)
T KOG1240|consen 1109 NG-DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH--D 1185 (1431)
T ss_pred CC-CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh--h
Confidence 88 8999999999999999876211 11112222 223 3334433222 377888888999999999853 1
Q ss_pred CCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEE-cCCCCEEEE-Ec-C
Q 009380 405 PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIW-GWDDSCVFI-GN-M 481 (536)
Q Consensus 405 ~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~g~~l~~-gs-~ 481 (536)
....+.....+.|++++.+|.++++++|+..|.+.+||++=..++....+... .++..+.+++ .+.....++ |+ .
T Consensus 1186 ~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~--~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR--APIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc--CCcceEEeeccCCCCceEEEecccC
Confidence 12233334567899999999999999999999999999987766666655433 2333333332 333445444 44 5
Q ss_pred CCcEEEEcCCccccceeccCCce----------------eeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 482 TRTVEVISPAQRRSVATLQSPYI----------------SAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 482 dg~I~v~d~~~~~~~~~l~~~~~----------------~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
.+.|.+|++.+|.....+..... ......++.-+..+..+.+|+.|..|+.||.
T Consensus 1264 ~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 68899999998865554433200 0011111222223578999999999999995
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=2.7e-16 Score=148.89 Aligned_cols=273 Identities=15% Similarity=0.216 Sum_probs=203.2
Q ss_pred ceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEE
Q 009380 185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWN 264 (536)
Q Consensus 185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd 264 (536)
+-..+.++.+|+.+. -++..|.|-.+|+..............|.++.|.. +..++|++-+ ..++|||
T Consensus 131 GPY~~~ytrnGrhll----------lgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LH--neq~~AVAQK-~y~yvYD 197 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLL----------LGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLH--NEQFFAVAQK-KYVYVYD 197 (545)
T ss_pred CCeeeeecCCccEEE----------ecCCccceeeeecccceeeeeeehhhhhhhhhhhc--chHHHHhhhh-ceEEEec
Confidence 334556667777666 45777888888875554444344478899999998 7788888775 5899999
Q ss_pred CCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEE
Q 009380 265 LDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFG 343 (536)
Q Consensus 265 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g 343 (536)
-. +..++.++.|. .|..+.|.|.. -+|++++..|.+..-|+.+|++...+ ...+.+..++-+|-+ ..+-+|
T Consensus 198 ~~-----GtElHClk~~~-~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N-aVih~G 269 (545)
T KOG1272|consen 198 NN-----GTELHCLKRHI-RVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN-AVIHLG 269 (545)
T ss_pred CC-----CcEEeehhhcC-chhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc-ceEEEc
Confidence 77 67888888774 58999999998 88899999999999999999876544 456788899999987 789999
Q ss_pred ECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEc
Q 009380 344 EGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFS 423 (536)
Q Consensus 344 ~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~s 423 (536)
..+|+|.+|.....+++..+..|.++|.+|++.+.| ++++|.+.|..|+|||+|+.. .+..... ..+...++||
T Consensus 270 hsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~----ql~t~~t-p~~a~~ls~S 343 (545)
T KOG1272|consen 270 HSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFY----QLHTYRT-PHPASNLSLS 343 (545)
T ss_pred CCCceEEecCCCCcchHHHHHhcCCCcceEEECCCC-cEEeecccccceeEeeecccc----ccceeec-CCCccccccc
Confidence 999999999999999988888999999999999977 899999999999999999853 3333333 5677888898
Q ss_pred cCCCeEEEEeCCCcEEEEeCC-CCC-cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380 424 PSGSSLATTSFDDTIGIWSGV-NFE-NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488 (536)
Q Consensus 424 p~g~~l~t~s~dg~I~iwd~~-~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~ 488 (536)
..| +++.+....|.||.-. .+. ......-....+..+.. +.|.|-...|-+|-..|.-.+.
T Consensus 344 qkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~--l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 344 QKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVED--LRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred ccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCccccc--ceeccHHHeeeccccCCceeEe
Confidence 766 5555666789999532 211 11111111222223444 5577766667666655544444
No 213
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=1.1e-13 Score=128.07 Aligned_cols=237 Identities=10% Similarity=0.107 Sum_probs=172.5
Q ss_pred CCEEEEEEecCCCCEEEEEECCCeEEEEECCCC-eEEEeecCCCceeEEEecCCCCCEEEEEECC--CeEEEEECCCCcc
Q 009380 283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE-VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ--GGLNIWDVRSRKS 359 (536)
Q Consensus 283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~-~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d--g~i~i~d~~~~~~ 359 (536)
..+..+.|+.+. ..|..|+.|| .++|..+.- ++.........|.-+-|+. .+++..+.+ ..+++++++.+..
T Consensus 6 ~ti~~~~~Nqd~-~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 6 PTINFIGFNQDS-TLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred cceeeeeeccce-eEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCce
Confidence 456777799887 8888888888 567776542 2212222234455566654 356555544 3599999998888
Q ss_pred ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe--CCCc
Q 009380 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS--FDDT 437 (536)
Q Consensus 360 ~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s--~dg~ 437 (536)
+..+. ....|.+|.++. +.|+++=. ..|+|||+++++... .+.....+...+.++++++.+.|++--+ ..|.
T Consensus 81 ICe~~-fpt~IL~VrmNr---~RLvV~Le-e~IyIydI~~MklLh-TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNR---KRLVVCLE-ESIYIYDIKDMKLLH-TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred EEEEe-cCCceEEEEEcc---ceEEEEEc-ccEEEEecccceeeh-hhhccCCCccceEeeccCCCCceEEecCCCCCce
Confidence 87776 678899999986 34555543 459999999975211 1111224666677777777777887644 4688
Q ss_pred EEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCc-EEEEcCCccccceeccCCceeeeeeeEeecCC
Q 009380 438 IGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRT-VEVISPAQRRSVATLQSPYISAIPCRFHAHPH 516 (536)
Q Consensus 438 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~-I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~ 516 (536)
|.|||+.+.++...+..+.. .+.+ ++|+++|.+||+++..|+ |+||.+.+|+.+++|.-+...+...+++|+|
T Consensus 155 V~l~d~~nl~~v~~I~aH~~---~lAa--lafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~- 228 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKG---PLAA--LAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP- 228 (391)
T ss_pred EEEEEcccceeeeEEEecCC---ceeE--EEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-
Confidence 99999999988888863222 2333 779999999999999987 6999999999999998666555557899999
Q ss_pred CCCEEEEEccCCeEEEEecC
Q 009380 517 QVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 517 ~~~~lasgs~Dg~v~iW~~d 536 (536)
++.+|++.++.++|+||.++
T Consensus 229 ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 229 DSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCCeEEEecCCCeEEEEEec
Confidence 56999999999999999875
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=3.2e-13 Score=122.67 Aligned_cols=237 Identities=13% Similarity=0.109 Sum_probs=169.3
Q ss_pred eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC--CEEEEEEecCCCCEEE-EEECC------CeE
Q 009380 237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG--PISGIVTQQYCLSKIF-TSCYD------GLI 307 (536)
Q Consensus 237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~~l~-s~s~d------g~I 307 (536)
..+++|+. |..-+++|..+| .+||+.+. .+....-+.+.+ .+..+-|-. ++|+ .|+.+ ..|
T Consensus 8 ~lsvs~NQ--D~ScFava~~~G-friyn~~P----~ke~~~r~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNkv 77 (346)
T KOG2111|consen 8 TLSVSFNQ--DHSCFAVATDTG-FRIYNCDP----FKESASRQFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNKV 77 (346)
T ss_pred eeEEEEcc--CCceEEEEecCc-eEEEecCc----hhhhhhhccccCchhhhhHhhhh---ceEEEecCCCCCCCCCceE
Confidence 44589988 888888888765 89999885 222222222222 233333332 4444 33333 469
Q ss_pred EEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC-CCccceeEecc--CCCeEEEEEecCCCCEEE
Q 009380 308 RLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR-SRKSATEWLLH--EARINTIDFNPRNPNIMA 384 (536)
Q Consensus 308 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~h--~~~i~~i~~~p~~~~~l~ 384 (536)
.|||=....+...+....+|.++.+.++ .|++... +.|.+|... +.+.++.+... ...+.+++-+. +..+||
T Consensus 78 iIWDD~k~~~i~el~f~~~I~~V~l~r~---riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~~La 152 (346)
T KOG2111|consen 78 IIWDDLKERCIIELSFNSEIKAVKLRRD---RIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKSLLA 152 (346)
T ss_pred EEEecccCcEEEEEEeccceeeEEEcCC---eEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCC-CceEEE
Confidence 9999777777777888899999999876 4555554 499999988 45666666532 23344444333 224555
Q ss_pred EEe-CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCc-EEEEeCCCCCcceEEeccCCCCcee
Q 009380 385 TSS-TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDT-IGIWSGVNFENTSMIHHNNQTGRWI 462 (536)
Q Consensus 385 s~s-~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~-I~iwd~~~~~~~~~~~~~~~~~~~~ 462 (536)
.-+ .-|.|.|-|+..... ..+..+..|...|.+++.+-+|..+||+|..|+ |+|||..+++.+..++..... .
T Consensus 153 fPg~k~GqvQi~dL~~~~~--~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~---A 227 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKP--NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR---A 227 (346)
T ss_pred cCCCccceEEEEEhhhcCc--CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch---h
Confidence 444 459999999988542 145667799999999999999999999999998 999999999999998754433 3
Q ss_pred eeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 463 SSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 463 ~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
..++++|||+..+|+++|..|+|+||.+...
T Consensus 228 ~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 4556889999999999999999999988653
No 215
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=7.1e-14 Score=142.50 Aligned_cols=236 Identities=12% Similarity=0.064 Sum_probs=154.8
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC---CCeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY---DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQP 334 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~---dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~ 334 (536)
..|.+||.+. .....+..+...+.+..|+|+| +.|+..+. +..|.+|++.++....+......+....|+|
T Consensus 179 ~~l~~~d~dg-----~~~~~lt~~~~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP 252 (429)
T PRK03629 179 YELRVSDYDG-----YNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 252 (429)
T ss_pred eeEEEEcCCC-----CCCEEeecCCCceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC
Confidence 3688888874 3334444567789999999999 77776543 4579999999887766655555667899999
Q ss_pred CCCCEEEEEECCC--eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE--eCCCCCCCCCCccee
Q 009380 335 NNVNTLYFGEGQG--GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIW--DLRSMATDKPEPMKV 410 (536)
Q Consensus 335 ~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw--dl~~~~~~~~~~~~~ 410 (536)
++..++++...+| .|++||+.+++.. .+..+...+....|+|++..++++...++...|| |+.++. ...+
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~-----~~~l 326 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA-----PQRI 326 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-----eEEe
Confidence 9944444445555 5999999887653 3443455678899999985444444444554555 655432 2233
Q ss_pred ecccCceeEEEEccCCCeEEEEeCC---CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCc---
Q 009380 411 LSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRT--- 484 (536)
Q Consensus 411 ~~~~~~v~~l~~sp~g~~l~t~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~--- 484 (536)
..+........|+|+|++|+..+.+ ..|.+||+.++... .+.... ....+.|+|||++|+.++.++.
T Consensus 327 t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~------~~~~p~~SpDG~~i~~~s~~~~~~~ 399 (429)
T PRK03629 327 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTF------LDETPSIAPNGTMVIYSSSQGMGSV 399 (429)
T ss_pred ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCC------CCCCceECCCCCEEEEEEcCCCceE
Confidence 3344456678999999998877644 35888998876533 222111 1123679999999998887754
Q ss_pred EEEEcCCccccceeccCCceeeeeeeEeecC
Q 009380 485 VEVISPAQRRSVATLQSPYISAIPCRFHAHP 515 (536)
Q Consensus 485 I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p 515 (536)
+.++++.+ .....+.++.... ...+|+|
T Consensus 400 l~~~~~~G-~~~~~l~~~~~~~--~~p~Wsp 427 (429)
T PRK03629 400 LNLVSTDG-RFKARLPATDGQV--KFPAWSP 427 (429)
T ss_pred EEEEECCC-CCeEECccCCCCc--CCcccCC
Confidence 67777754 3556665533322 3466766
No 216
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.5e-14 Score=137.96 Aligned_cols=280 Identities=15% Similarity=0.183 Sum_probs=194.5
Q ss_pred ccCCceEEEEEEecCCccEE-EEEeCCCcEEEEECCCCCCCCCceEEeccCC--CCEEEEEEecCCCCEEEEEECCCeEE
Q 009380 232 IMPGRITQMKFLPCSDVRMV-VAGSKLGNITFWNLDSQQDEDNGIYLFRTHL--GPISGIVTQQYCLSKIFTSCYDGLIR 308 (536)
Q Consensus 232 ~~~~~I~~v~~~p~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~~l~s~s~dg~I~ 308 (536)
.|+..-+.|..+| ||.|+ |+|..--.|++||+.. ....|..|. ..|.-.-.+.|- ..++.-..|.+|-
T Consensus 49 e~p~ast~ik~s~--DGqY~lAtG~YKP~ikvydlan------LSLKFERhlDae~V~feiLsDD~-SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 49 EMPTASTRIKVSP--DGQYLLATGTYKPQIKVYDLAN------LSLKFERHLDAEVVDFEILSDDY-SKSVFLQNDRTIE 119 (703)
T ss_pred CCccccceeEecC--CCcEEEEecccCCceEEEEccc------ceeeeeecccccceeEEEeccch-hhheEeecCceee
Confidence 3577889999999 99875 5677788999999985 223344443 334444444443 5666667788776
Q ss_pred EEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC
Q 009380 309 LMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST 388 (536)
Q Consensus 309 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~ 388 (536)
+..--..-.. ......-.+++++.-... |++++....|+-+++..|..+..+....+.+++|..++.+ .+|++|+.
T Consensus 120 fHak~G~hy~--~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h-gLla~Gt~ 195 (703)
T KOG2321|consen 120 FHAKYGRHYR--TRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH-GLLACGTE 195 (703)
T ss_pred ehhhcCeeee--eecCcCCccccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeeecCcc-ceEEeccc
Confidence 6543322111 112234456666655533 4445555589999999999999998888999999999977 69999999
Q ss_pred CCcEEEEeCCCCCCCCC--CcceeecccC-----ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCce
Q 009380 389 DGTACIWDLRSMATDKP--EPMKVLSHKR-----AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRW 461 (536)
Q Consensus 389 dg~i~iwdl~~~~~~~~--~~~~~~~~~~-----~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 461 (536)
+|.|-.||.|.-..... ....+..|.+ .|+++.|+.+|-.+++|+.+|.|.|||++..+++..-.|....
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~--- 272 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYEL--- 272 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcc---
Confidence 99999999997432110 0111112333 4999999999999999999999999999999888877665432
Q ss_pred eeeeEEEEcCC--CCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380 462 ISSFRAIWGWD--DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533 (536)
Q Consensus 462 ~~~~~~~~s~~--g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW 533 (536)
.+..+.|.+. +..|++. ....++|||-.+|+....+..... + ..+++-| ++.++.+|..++.+..|
T Consensus 273 -pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~--l-ND~C~~p-~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 273 -PIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSD--L-NDFCFVP-GSGMFFTANESSKMHTY 340 (703)
T ss_pred -ceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCC--c-Cceeeec-CCceEEEecCCCcceeE
Confidence 3334667554 3334433 346799999999999888775332 2 3566667 56899999998887665
No 217
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.64 E-value=4.5e-14 Score=128.16 Aligned_cols=213 Identities=14% Similarity=0.139 Sum_probs=163.4
Q ss_pred EeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe----EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEE
Q 009380 277 LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV----FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIW 352 (536)
Q Consensus 277 ~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~----~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~ 352 (536)
.+.....+|+|.+|+++. ..++.+.....|.||...+.. ...+..|+..|+.++|.|.. +.|++++.|..-++|
T Consensus 5 ~~~~~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw 82 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVW 82 (361)
T ss_pred EeeeccCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCcccc
Confidence 344446789999999998 999999999999999988765 23445789999999999998 899999999999999
Q ss_pred ECCCC---ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeE
Q 009380 353 DVRSR---KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSL 429 (536)
Q Consensus 353 d~~~~---~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 429 (536)
....+ ++...+..+....++|.|+|.+ +.||+|+.-..|.||-+...+.--.....-..+...|+++.|+|++-++
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence 98543 3445555789999999999965 8999999999999998876431111111223577899999999999999
Q ss_pred EEEeCCCcEEEEeCC-----CCC---------cceEE-eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc
Q 009380 430 ATTSFDDTIGIWSGV-----NFE---------NTSMI-HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR 494 (536)
Q Consensus 430 ~t~s~dg~I~iwd~~-----~~~---------~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~ 494 (536)
++|+.|+..+||..- ... +...+ ......+.|+. .+.|+|+|..|+-.+.|..+.+-|.....
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh--~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVH--GVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCcee--eeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 999999999999742 100 00000 01113344444 47899999999999999999999987764
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=2.7e-14 Score=137.77 Aligned_cols=236 Identities=14% Similarity=0.117 Sum_probs=151.5
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCce--EEeccCCCCEEEEEEe-----cCCCCEEEEEECCCeEEEEECCCCeEEE
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGI--YLFRTHLGPISGIVTQ-----QYCLSKIFTSCYDGLIRLMDAEKEVFDL 319 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~--~~~~~h~~~V~~l~~~-----~~~~~~l~s~s~dg~I~vwd~~~~~~~~ 319 (536)
.|++|+..- ...+++|+..........+ ..+.+ ..-+|-+|+ +.+ --|+.+-.-|.|++.|........
T Consensus 134 ~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~idp~~~~~sk 209 (636)
T KOG2394|consen 134 KGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKG-LDLLIGFTTGQVQLIDPINFEVSK 209 (636)
T ss_pred CCCEEEEec-CCeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCC-cceEEeeccCceEEecchhhHHHH
Confidence 555554432 2367888877422111111 12222 122344442 334 567778778889998877654433
Q ss_pred eec-----CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEE--EEecCCCCEEEEEeCCCcE
Q 009380 320 VYS-----SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTI--DFNPRNPNIMATSSTDGTA 392 (536)
Q Consensus 320 ~~~-----~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i--~~~p~~~~~l~s~s~dg~i 392 (536)
++. ....++|+.|-|.+...++++-.+|.+++||..- ....+.- ...+++ ..|+..
T Consensus 210 lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~----------~~~~t~p~~~~~k~~-~~f~i~------ 272 (636)
T KOG2394|consen 210 LFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI----------VCGATAPSYQALKDG-DQFAIL------ 272 (636)
T ss_pred hhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc----------cccCCCCcccccCCC-CeeEEe------
Confidence 332 3478999999999989999999999999999721 1111111 122223 223222
Q ss_pred EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCC
Q 009380 393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD 472 (536)
Q Consensus 393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 472 (536)
.|--... ...+....-..+.|+.++|+|||++||+.+.||.++|||..+.+.+..++.- .+ ..++++||||
T Consensus 273 -t~ksk~~---rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY--FG---GLLCvcWSPD 343 (636)
T KOG2394|consen 273 -TSKSKKT---RNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY--FG---GLLCVCWSPD 343 (636)
T ss_pred -eeecccc---CCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh--cc---ceEEEEEcCC
Confidence 1111110 1123333344569999999999999999999999999999887766554321 11 2456899999
Q ss_pred CCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeec
Q 009380 473 DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAH 514 (536)
Q Consensus 473 g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~ 514 (536)
|+||++|+.|--|.||.+...+.++.-++|...+. .++|.
T Consensus 344 GKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs--~VaFD 383 (636)
T KOG2394|consen 344 GKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS--VVAFD 383 (636)
T ss_pred ccEEEecCCcceEEEEEeccceEEEecccccccee--eEeec
Confidence 99999999999999999999999998887765544 44444
No 219
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=7.2e-14 Score=143.09 Aligned_cols=223 Identities=15% Similarity=0.057 Sum_probs=150.3
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC---CeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---GLIRLMDAEKEVFDLVYSSEYAVFSLSQQP 334 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~ 334 (536)
..|.+||.+. .....+..|...+.+..|+|++ +.|+.++.+ ..|.+||+.++....+....+...+..|+|
T Consensus 184 ~~l~i~D~~g-----~~~~~lt~~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 184 YALQVADSDG-----YNPQTILRSAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP 257 (433)
T ss_pred EEEEEECCCC-----CCceEeecCCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC
Confidence 3688899863 3445566677889999999999 888877643 469999999887766655556666889999
Q ss_pred CCCCEEEEEECCC--eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCc--EEEEeCCCCCCCCCCccee
Q 009380 335 NNVNTLYFGEGQG--GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGT--ACIWDLRSMATDKPEPMKV 410 (536)
Q Consensus 335 ~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~--i~iwdl~~~~~~~~~~~~~ 410 (536)
++..++++.+.+| .|++||+.+++. ..+..+.......+|+|++..++++...+|. |+++|+.+++ ...+
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-----~~~l 331 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-----AERL 331 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-----eEEe
Confidence 9954555556655 599999988764 4444555556788999998544444444555 6666766542 2222
Q ss_pred ecccCceeEEEEccCCCeEEEEeCCC---cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC---Cc
Q 009380 411 LSHKRAVHSAYFSPSGSSLATTSFDD---TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT---RT 484 (536)
Q Consensus 411 ~~~~~~v~~l~~sp~g~~l~t~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d---g~ 484 (536)
..+......++|+|+|++|+..+.++ .|.+||+.+++.. .+.+.. . ...+.|+|||++|+..+.+ +.
T Consensus 332 t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~----~--~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 332 TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGS----L--DESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCC----C--CCCceECCCCCEEEEEEecCCceE
Confidence 22333455789999999998776443 5999999776543 332211 1 1125799999987776653 45
Q ss_pred EEEEcCCccccceecc
Q 009380 485 VEVISPAQRRSVATLQ 500 (536)
Q Consensus 485 I~v~d~~~~~~~~~l~ 500 (536)
|.+++..++ ....+.
T Consensus 405 L~~~~~~g~-~~~~l~ 419 (433)
T PRK04922 405 LAAVSTDGR-VRQRLV 419 (433)
T ss_pred EEEEECCCC-ceEEcc
Confidence 788888654 444454
No 220
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.63 E-value=3.4e-14 Score=130.08 Aligned_cols=255 Identities=15% Similarity=0.187 Sum_probs=193.4
Q ss_pred ccccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC---ccccccccCCceEEEEEEecCC
Q 009380 171 KDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK---PENIARIMPGRITQMKFLPCSD 247 (536)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~---~~~~~~~~~~~I~~v~~~p~~~ 247 (536)
..+.+..+++||.+.|......|....+.+ .+.|..+++|--... -..+....+.+++++.+++ +
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~----------~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e 79 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVIS----------VSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--E 79 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEE----------ccccceeeeEEeccccccCchhhhhCCCCceEeeeec--c
Confidence 455677788999999888887777766653 467778888853111 1234455689999999999 8
Q ss_pred ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCce
Q 009380 248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAV 327 (536)
Q Consensus 248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i 327 (536)
...|++|-.+|++.-+.+...-......+.+..|...|..+-|+... .++++.+.|..+.-.-.+.+...--+......
T Consensus 80 ~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~ 158 (404)
T KOG1409|consen 80 SRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFETPA 158 (404)
T ss_pred ceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEeeccC
Confidence 99999999999999998876444456677888999999999999876 99999999998866555555433222222222
Q ss_pred eEEEecCCCCCEEEEEECCCeEEEEECC--CCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 009380 328 FSLSQQPNNVNTLYFGEGQGGLNIWDVR--SRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405 (536)
Q Consensus 328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~--~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~ 405 (536)
+++.+.- .+.++|...|.|.+..+. .-..+.++.+|.+.+.+++|.|.+ .++.+|..|..+.+||+...+ .
T Consensus 159 t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~---g 231 (404)
T KOG1409|consen 159 SALQFDA---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRK---G 231 (404)
T ss_pred CCCceee---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCc---c
Confidence 2333321 156667777777666554 345688899999999999999955 799999999999999997643 3
Q ss_pred CcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380 406 EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 406 ~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~ 445 (536)
......+|...|..+..-+.-..+++++.||.|.+|+++.
T Consensus 232 ~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 232 TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 5566778999999999988888999999999999999864
No 221
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.1e-13 Score=132.65 Aligned_cols=310 Identities=13% Similarity=0.093 Sum_probs=203.8
Q ss_pred eeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEE-----eC----
Q 009380 186 FKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAG-----SK---- 256 (536)
Q Consensus 186 v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg-----~~---- 256 (536)
...+.+++.|++++.+.+..++++ +..... .++......++++.|+| -+.+|.+= ..
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~-----------~~~~~~-~~lt~~~~~~~~L~fSP--~g~yL~T~e~~~i~~~~~~ 102 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVF-----------EIATLK-VVLCVELKKTYDLLFSP--KGNYLLTWEPWAIYGPKNA 102 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEE-----------EccCCc-EEEEeccceeeeeeecc--cccccccccccccccCCCC
Confidence 567789999999998855555444 432221 22222233799999999 88888762 11
Q ss_pred -CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCC
Q 009380 257 -LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPN 335 (536)
Q Consensus 257 -dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~ 335 (536)
.-.+.+|++.+ ......++.-...-++..|+.|. .|+.--..+.+.+|++..-......-|...|..+.++|.
T Consensus 103 ~~pn~~v~~vet----~~~~s~~q~k~Q~~W~~qfs~dE--sl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpg 176 (566)
T KOG2315|consen 103 SNPNVLVYNVET----GVQRSQIQKKMQNGWVPQFSIDE--SLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPG 176 (566)
T ss_pred CCCceeeeeecc----ceehhheehhhhcCcccccccch--hhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCC
Confidence 23577999987 33344444333333688999885 444444567899999987544444446788999999998
Q ss_pred -CCCEEEE-----EECCCeEEEEECCCCcc-----ceeEeccCCCeEEEEEecCCCCEEEEEeCC-----------CcEE
Q 009380 336 -NVNTLYF-----GEGQGGLNIWDVRSRKS-----ATEWLLHEARINTIDFNPRNPNIMATSSTD-----------GTAC 393 (536)
Q Consensus 336 -~~~~l~~-----g~~dg~i~i~d~~~~~~-----~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-----------g~i~ 393 (536)
.+..+++ ++.-+.|+||-...... .++|. ...=..+.|++-+.-+|+.++.| .+++
T Consensus 177 p~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Ly 254 (566)
T KOG2315|consen 177 PEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLY 254 (566)
T ss_pred CCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEE
Confidence 3344544 34456899998763222 12221 22334588988775565555432 3577
Q ss_pred EEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe--CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcC
Q 009380 394 IWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS--FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGW 471 (536)
Q Consensus 394 iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 471 (536)
+.++... ....-..-.++|+++.|+|+|+-|+++. +-..+.|||++ +.++..+. .+..-+ +-|+|
T Consensus 255 ll~t~g~-----s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~----egpRN~---~~fnp 321 (566)
T KOG2315|consen 255 LLATQGE-----SVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP----EGPRNT---AFFNP 321 (566)
T ss_pred EEEecCc-----eEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----CCCccc---eEECC
Confidence 7777731 2333334578999999999998776643 56789999985 33444442 221111 66999
Q ss_pred CCCEEEEEcCC---CcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEc------cCCeEEEEec
Q 009380 472 DDSCVFIGNMT---RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT------GGGQVYVWTS 535 (536)
Q Consensus 472 ~g~~l~~gs~d---g~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs------~Dg~v~iW~~ 535 (536)
.|++|+.++.+ |.|.|||+.+.+++..+.... .+.+.|+| ||.+|+|++ .|+.++||+.
T Consensus 322 ~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~----tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 322 HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN----TTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred CCCEEEEeecCCCCCceEEEeccchhhccccccCC----ceEEEEcC-CCcEEEEEeccccEEecCCeEEEEe
Confidence 99998776554 889999999998988887532 24578999 789999887 4678899975
No 222
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=9.2e-15 Score=137.47 Aligned_cols=195 Identities=17% Similarity=0.158 Sum_probs=150.1
Q ss_pred EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380 238 TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF 317 (536)
Q Consensus 238 ~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~ 317 (536)
-+++|++ +|..|++|+.||+++||+... ...+.....|.+.|.++.|+||+ .+|++.+.| ..+||+.+++..
T Consensus 148 k~vaf~~--~gs~latgg~dg~lRv~~~Ps----~~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNG--DGSKLATGGTDGTLRVWEWPS----MLTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcC--CCCEeeeccccceEEEEecCc----chhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCch
Confidence 7899999 999999999999999999776 67777888899999999999999 999999999 899999999844
Q ss_pred EEe---ecCCCceeEEEecCCC--CCE-EEEE-ECCCeEEEEECCCCcc-----ceeEeccCCCeEEEEEecCCCCEEEE
Q 009380 318 DLV---YSSEYAVFSLSQQPNN--VNT-LYFG-EGQGGLNIWDVRSRKS-----ATEWLLHEARINTIDFNPRNPNIMAT 385 (536)
Q Consensus 318 ~~~---~~~~~~i~~l~~~~~~--~~~-l~~g-~~dg~i~i~d~~~~~~-----~~~~~~h~~~i~~i~~~p~~~~~l~s 385 (536)
... +..+.....+.|+.++ +.+ +++. ...+.|..||+...+- ..+...-...|.+++.+++| ++++.
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-kf~Al 298 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-KFLAL 298 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-cEEEE
Confidence 322 2334556677777654 122 3322 2345677776653221 11222234579999999988 79999
Q ss_pred EeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380 386 SSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 386 ~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~ 444 (536)
|+.||.|-|++..+.+. ..+.-..|...|+.+.|+|+.+++++.+.|..+.|..+.
T Consensus 299 GT~dGsVai~~~~~lq~---~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQR---LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred eccCCcEEEEEeceeee---eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999999999988641 122223699999999999999999999999998888764
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.3e-13 Score=140.69 Aligned_cols=225 Identities=12% Similarity=0.058 Sum_probs=145.5
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC---CeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---GLIRLMDAEKEVFDLVYSSEYAVFSLSQQP 334 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~ 334 (536)
..|.+||.+ +.....+..+...+.+.+|+|++ +.|+..+.+ ..|.+||+.++....+....+.+.+..|+|
T Consensus 176 ~~L~~~D~d-----G~~~~~l~~~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SP 249 (427)
T PRK02889 176 YQLQISDAD-----GQNAQSALSSPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSP 249 (427)
T ss_pred cEEEEECCC-----CCCceEeccCCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECC
Confidence 356666664 34445556777889999999999 888777643 459999999987766655566777899999
Q ss_pred CCCCEEEEEECCCeEEEEE--CCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec
Q 009380 335 NNVNTLYFGEGQGGLNIWD--VRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS 412 (536)
Q Consensus 335 ~~~~~l~~g~~dg~i~i~d--~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~ 412 (536)
++..++++.+.+|...+|. +..+. ...+..+........|+|+|..+++++..+|...||.+.... .....+..
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~---g~~~~lt~ 325 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG---GAAQRVTF 325 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC---CceEEEec
Confidence 9944445667777755554 44443 455555555667789999985444454445667777654321 11222222
Q ss_pred ccCceeEEEEccCCCeEEEEeCCC---cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC---cEE
Q 009380 413 HKRAVHSAYFSPSGSSLATTSFDD---TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR---TVE 486 (536)
Q Consensus 413 ~~~~v~~l~~sp~g~~l~t~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg---~I~ 486 (536)
+........|+|+|++|+..+.++ .|.+||+.+++... +.... .. ..+.|+|||+.|+..+.++ .+.
T Consensus 326 ~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~----~~--~~p~~spdg~~l~~~~~~~g~~~l~ 398 (427)
T PRK02889 326 TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTT----RD--ESPSFAPNGRYILYATQQGGRSVLA 398 (427)
T ss_pred CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCC----Cc--cCceECCCCCEEEEEEecCCCEEEE
Confidence 233345688999999998877654 59999998765432 22111 11 2267999999988776553 355
Q ss_pred EEcCCccccceecc
Q 009380 487 VISPAQRRSVATLQ 500 (536)
Q Consensus 487 v~d~~~~~~~~~l~ 500 (536)
+.+.. +.....+.
T Consensus 399 ~~~~~-g~~~~~l~ 411 (427)
T PRK02889 399 AVSSD-GRIKQRLS 411 (427)
T ss_pred EEECC-CCceEEee
Confidence 66663 44444444
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.4e-13 Score=138.34 Aligned_cols=222 Identities=14% Similarity=0.133 Sum_probs=152.6
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC---CCeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY---DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQP 334 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~---dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~ 334 (536)
..|.+||.+ +.....+..|...+.+..|+|+| +.|+..+. +..|.+||+.++....+..+.+.+...+|+|
T Consensus 182 ~~l~~~d~d-----g~~~~~lt~~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP 255 (435)
T PRK05137 182 KRLAIMDQD-----GANVRYLTDGSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP 255 (435)
T ss_pred eEEEEECCC-----CCCcEEEecCCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC
Confidence 478888876 34455666788899999999999 77777664 4689999999988777766777888999999
Q ss_pred CCCCEEEEEECCCe--EEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe-CCC--cEEEEeCCCCCCCCCCcce
Q 009380 335 NNVNTLYFGEGQGG--LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS-TDG--TACIWDLRSMATDKPEPMK 409 (536)
Q Consensus 335 ~~~~~l~~g~~dg~--i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s-~dg--~i~iwdl~~~~~~~~~~~~ 409 (536)
++..++++.+.+|. |++||+.++.. ..+..+........|+|++. .|+..+ .+| .|++||+..+. ...
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~g~~-----~~~ 328 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNADGSN-----PRR 328 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECCCCC-----eEE
Confidence 99545556666554 77889887754 44555666677899999985 555444 444 57888876542 233
Q ss_pred eecccCceeEEEEccCCCeEEEEeCC---CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC----
Q 009380 410 VLSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT---- 482 (536)
Q Consensus 410 ~~~~~~~v~~l~~sp~g~~l~t~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d---- 482 (536)
+..+...+....|+|+|++|+..+.+ ..|.+||+.... ...+.... . ...+.|+|||+.|+..+.+
T Consensus 329 lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~----~--~~~p~~spDG~~i~~~~~~~~~~ 401 (435)
T PRK05137 329 ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGF----L--VEGPTWAPNGRVIMFFRQTPGSG 401 (435)
T ss_pred eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCC----C--CCCCeECCCCCEEEEEEccCCCC
Confidence 33345566778999999999887654 358888875443 23332111 1 1236799999987765443
Q ss_pred --CcEEEEcCCccccceecc
Q 009380 483 --RTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 483 --g~I~v~d~~~~~~~~~l~ 500 (536)
..+.++++.++.. ..+.
T Consensus 402 ~~~~L~~~dl~g~~~-~~l~ 420 (435)
T PRK05137 402 GAPKLYTVDLTGRNE-REVP 420 (435)
T ss_pred CcceEEEEECCCCce-EEcc
Confidence 2578888876643 3443
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=8.5e-14 Score=129.64 Aligned_cols=257 Identities=14% Similarity=0.112 Sum_probs=185.2
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCC--CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEE
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDED--NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD 311 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd 311 (536)
..+|+.++|.-......|...+.+..+..+.+....... ..+......+.+|..+.... ..|++|-.+|.+.+|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEecCCcEEEEe
Confidence 467888999863344566666677777777776532111 11223445567777777653 5899999999999999
Q ss_pred CCCCe----EEEeecCCCceeEEEecCCCCCEEEEEECC--CeEEEEECCCCccceeEec---------cCCCeEEEEEe
Q 009380 312 AEKEV----FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ--GGLNIWDVRSRKSATEWLL---------HEARINTIDFN 376 (536)
Q Consensus 312 ~~~~~----~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d--g~i~i~d~~~~~~~~~~~~---------h~~~i~~i~~~ 376 (536)
...+. .........++..+.-++..++++++|+.. ..+.+||+...+.+..-+. -.-+++++.|.
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 88432 122233446788888888888889999998 8999999998754433221 12357788998
Q ss_pred cCC-CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc
Q 009380 377 PRN-PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN 455 (536)
Q Consensus 377 p~~-~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~ 455 (536)
+.. .+.||+++.-+.|++||.+... ..+..+.-...+++++...|+|+.|++|..-+.+..||++.++...... .
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qR---RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~-k 287 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQR---RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL-K 287 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccC---cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc-C
Confidence 841 4789999999999999999753 2344444567899999999999999999999999999999877655421 1
Q ss_pred CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380 456 NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 456 ~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~ 500 (536)
...|. +.. +.-+|.+++|++++-|+.|+|+|+.+.++++...
T Consensus 288 g~tGs-irs--ih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 288 GITGS-IRS--IHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred CccCC-cce--EEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence 12222 222 4458888999999999999999999977766543
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=3.9e-13 Score=137.09 Aligned_cols=220 Identities=10% Similarity=0.046 Sum_probs=145.5
Q ss_pred ceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeC---CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEe
Q 009380 215 SCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSK---LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQ 291 (536)
Q Consensus 215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~---dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~ 291 (536)
..|.+||.+......+..+...+.+.+|+| ||+.|+..+. +..|.+|++.++. ...+..+.+ .+..+.|+
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSP--DG~~la~~s~~~g~~~i~i~dl~~G~--~~~l~~~~~---~~~~~~~S 251 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPR---HNGAPAFS 251 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcC--CCCEEEEEEecCCCcEEEEEECCCCC--eEEccCCCC---CcCCeEEC
Confidence 467788875544444445677899999999 9998886542 3579999987632 122223333 34568999
Q ss_pred cCCCCEEEE-EECCC--eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEEC-CC--eEEEEECCCCccceeEec
Q 009380 292 QYCLSKIFT-SCYDG--LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEG-QG--GLNIWDVRSRKSATEWLL 365 (536)
Q Consensus 292 ~~~~~~l~s-~s~dg--~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~ 365 (536)
|+| +.|+. .+.+| .|.+||+.++....+..+...+....|+|++ +.|+..+. +| .|+++|+.++.. ..+..
T Consensus 252 PDG-~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~ 328 (429)
T PRK03629 252 PDG-SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAP-QRITW 328 (429)
T ss_pred CCC-CEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCe-EEeec
Confidence 999 66654 45455 5889999998877777666678899999998 66655554 34 455557766543 34443
Q ss_pred cCCCeEEEEEecCCCCEEEEEe-CC--CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCc---EE
Q 009380 366 HEARINTIDFNPRNPNIMATSS-TD--GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDT---IG 439 (536)
Q Consensus 366 h~~~i~~i~~~p~~~~~l~s~s-~d--g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~---I~ 439 (536)
+........|+|+|. +|+..+ .+ ..|.+||+.++. ...+. .........|+|||++|+.++.++. +.
T Consensus 329 ~~~~~~~~~~SpDG~-~Ia~~~~~~g~~~I~~~dl~~g~-----~~~Lt-~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~ 401 (429)
T PRK03629 329 EGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATGG-----VQVLT-DTFLDETPSIAPNGTMVIYSSSQGMGSVLN 401 (429)
T ss_pred CCCCccCEEECCCCC-EEEEEEccCCCceEEEEECCCCC-----eEEeC-CCCCCCCceECCCCCEEEEEEcCCCceEEE
Confidence 445566789999985 555444 33 358889988753 11221 1223456889999999999988764 67
Q ss_pred EEeCCCCCcceEE
Q 009380 440 IWSGVNFENTSMI 452 (536)
Q Consensus 440 iwd~~~~~~~~~~ 452 (536)
++++. +.....+
T Consensus 402 ~~~~~-G~~~~~l 413 (429)
T PRK03629 402 LVSTD-GRFKARL 413 (429)
T ss_pred EEECC-CCCeEEC
Confidence 77774 3333333
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=3e-13 Score=138.56 Aligned_cols=215 Identities=14% Similarity=0.084 Sum_probs=144.6
Q ss_pred ceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC---CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEe
Q 009380 215 SCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL---GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQ 291 (536)
Q Consensus 215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~ 291 (536)
..|.+||........+..+...+.+.+|+| ||+.|+..+.+ ..|.+|++.++ . ...+..+.+...+..|+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSp--Dg~~la~~s~~~~~~~l~~~dl~~g----~-~~~l~~~~g~~~~~~~S 256 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSP--DGKKLAYVSFERGRSAIYVQDLATG----Q-RELVASFRGINGAPSFS 256 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCC--CCCEEEEEecCCCCcEEEEEECCCC----C-EEEeccCCCCccCceEC
Confidence 468888875544444455677899999999 99988887643 46999999763 2 22333344455678999
Q ss_pred cCCCCEEEEEECCC--eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEE-CCCe--EEEEECCCCccceeEecc
Q 009380 292 QYCLSKIFTSCYDG--LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE-GQGG--LNIWDVRSRKSATEWLLH 366 (536)
Q Consensus 292 ~~~~~~l~s~s~dg--~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~-~dg~--i~i~d~~~~~~~~~~~~h 366 (536)
|+|..++++.+.+| .|.+||+.++....+..+.......+|+|++ ..|++.+ .+|. |+++|+.+++. ..+..+
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~ 334 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQ 334 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCe-EEeecC
Confidence 99933445666666 5999999998877766665566788999998 5665555 4444 77777776653 333333
Q ss_pred CCCeEEEEEecCCCCEEEEEeCC-C--cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC---CcEEE
Q 009380 367 EARINTIDFNPRNPNIMATSSTD-G--TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD---DTIGI 440 (536)
Q Consensus 367 ~~~i~~i~~~p~~~~~l~s~s~d-g--~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d---g~I~i 440 (536)
......++|+|+|. +++..+.+ + .|.+||+.+++ .. ...+........|+|+|++|+..+.+ ..|.+
T Consensus 335 g~~~~~~~~SpDG~-~Ia~~~~~~~~~~I~v~d~~~g~-----~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~ 407 (433)
T PRK04922 335 GNYNARASVSPDGK-KIAMVHGSGGQYRIAVMDLSTGS-----VR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAA 407 (433)
T ss_pred CCCccCEEECCCCC-EEEEEECCCCceeEEEEECCCCC-----eE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 34455789999985 55544333 2 59999997753 11 22233345567999999988777653 35778
Q ss_pred EeCCC
Q 009380 441 WSGVN 445 (536)
Q Consensus 441 wd~~~ 445 (536)
+++..
T Consensus 408 ~~~~g 412 (433)
T PRK04922 408 VSTDG 412 (433)
T ss_pred EECCC
Confidence 88743
No 228
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.59 E-value=3.1e-13 Score=123.77 Aligned_cols=255 Identities=20% Similarity=0.297 Sum_probs=177.0
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC-CCCceEEeccCC------------CCEEEEEEecCC-CCEEE
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD-EDNGIYLFRTHL------------GPISGIVTQQYC-LSKIF 299 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~h~------------~~V~~l~~~~~~-~~~l~ 299 (536)
.+-|.+|.|.. +|.+|++|+++|.|.++.-..... +......++.|. ..|..+.|.+++ ...++
T Consensus 25 adiis~vef~~--~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDH--YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeec--ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 35689999999 999999999999999998664321 122334555553 358889998875 24677
Q ss_pred EEECCCeEEEEECCCCeE-----------------------------------EEee--cCCCceeEEEecCCCCCEEEE
Q 009380 300 TSCYDGLIRLMDAEKEVF-----------------------------------DLVY--SSEYAVFSLSQQPNNVNTLYF 342 (536)
Q Consensus 300 s~s~dg~I~vwd~~~~~~-----------------------------------~~~~--~~~~~i~~l~~~~~~~~~l~~ 342 (536)
..+.|.+|++|.+..... ..++ .|..-|.+|.++.+. ..++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-Et~l- 180 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-ETFL- 180 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-ceEe-
Confidence 788899999998753210 1111 366678999999887 4444
Q ss_pred EECCCeEEEEECCCCcccee---Eecc-----CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC-----------C
Q 009380 343 GEGQGGLNIWDVRSRKSATE---WLLH-----EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT-----------D 403 (536)
Q Consensus 343 g~~dg~i~i~d~~~~~~~~~---~~~h-----~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~-----------~ 403 (536)
...|=.|.+|++.--..... ++.+ ..-|++..|||...++|+-.+..|+|++.|+|...- .
T Consensus 181 SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 181 SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 45567899999875433222 2222 346899999998888999999999999999995210 0
Q ss_pred CCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCC-CCCcceEEeccC----------CCCceeeeeEEEEcC
Q 009380 404 KPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV-NFENTSMIHHNN----------QTGRWISSFRAIWGW 471 (536)
Q Consensus 404 ~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~s~ 471 (536)
.+....++ .--..|..+.|+++|+|+++-.. -+|++||+. ..+++.++.... .......-+.++|+.
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 00111111 23457899999999999997654 579999994 445555554221 111123346789999
Q ss_pred CCCEEEEEcCCCcEEEEcCCcc
Q 009380 472 DDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 472 ~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
++.++++|+.++.+++|+...|
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CcceEecccccceEEEecCCCC
Confidence 9999999999999999996544
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=4.7e-13 Score=137.30 Aligned_cols=216 Identities=13% Similarity=0.082 Sum_probs=149.4
Q ss_pred ceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeC---CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEe
Q 009380 215 SCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSK---LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQ 291 (536)
Q Consensus 215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~---dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~ 291 (536)
..|.++|........+..|...+.+.+|+| ||+.|+..+. +..|.+||+.++ . ...+..+.+.+....|+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSp--DG~~lay~s~~~g~~~i~~~dl~~g----~-~~~l~~~~g~~~~~~~S 254 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSP--NRQEITYMSYANGRPRVYLLDLETG----Q-RELVGNFPGMTFAPRFS 254 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECC--CCCEEEEEEecCCCCEEEEEECCCC----c-EEEeecCCCcccCcEEC
Confidence 367777765544444566778999999999 9998887754 468999999863 2 23444566677889999
Q ss_pred cCCCCEE-EEEECCCe--EEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEE-CCC--eEEEEECCCCccceeEec
Q 009380 292 QYCLSKI-FTSCYDGL--IRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE-GQG--GLNIWDVRSRKSATEWLL 365 (536)
Q Consensus 292 ~~~~~~l-~s~s~dg~--I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~-~dg--~i~i~d~~~~~~~~~~~~ 365 (536)
|+| +.| ++.+.++. |.+||+.++....+..+.......+|+|++ ..|+..+ .+| .|+++|+..+.. ..+..
T Consensus 255 PDG-~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~ 331 (435)
T PRK05137 255 PDG-RKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNP-RRISF 331 (435)
T ss_pred CCC-CEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCe-EEeec
Confidence 999 554 56666665 777899988877776666667789999998 5666555 333 688889876543 44443
Q ss_pred cCCCeEEEEEecCCCCEEEEEeCC---CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC------C
Q 009380 366 HEARINTIDFNPRNPNIMATSSTD---GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD------D 436 (536)
Q Consensus 366 h~~~i~~i~~~p~~~~~l~s~s~d---g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d------g 436 (536)
+...+....|+|+|. .|+..+.+ ..|.+||+.... .........+..+.|+|||+.|+..+.+ .
T Consensus 332 ~~~~~~~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~~~~------~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 332 GGGRYSTPVWSPRGD-LIAFTKQGGGQFSIGVMKPDGSG------ERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred CCCcccCeEECCCCC-EEEEEEcCCCceEEEEEECCCCc------eEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 455677789999985 55554433 357888875532 1222223357789999999988776543 2
Q ss_pred cEEEEeCCCCC
Q 009380 437 TIGIWSGVNFE 447 (536)
Q Consensus 437 ~I~iwd~~~~~ 447 (536)
.|.++|+....
T Consensus 405 ~L~~~dl~g~~ 415 (435)
T PRK05137 405 KLYTVDLTGRN 415 (435)
T ss_pred eEEEEECCCCc
Confidence 57788876543
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.57 E-value=1.9e-12 Score=128.25 Aligned_cols=275 Identities=14% Similarity=0.169 Sum_probs=176.2
Q ss_pred cEE-EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCce
Q 009380 249 RMV-VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAV 327 (536)
Q Consensus 249 ~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i 327 (536)
+++ ++-..+|.|.|.|..+ .+.+..+......-..+.|+||+ +++++++.||.|.++|+.+.+...........
T Consensus 6 ~l~~V~~~~~~~v~viD~~t----~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~ 80 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGAT----NKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVATIKVGGNP 80 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-----SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEEEEE-SSEE
T ss_pred cEEEEEecCCCEEEEEECCC----CeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEEEEecCCCc
Confidence 444 4566789999999987 67788887655544557899999 99999999999999999999888777777888
Q ss_pred eEEEecCCCCCEEEEE-ECCCeEEEEECCCCccceeEecc-------CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380 328 FSLSQQPNNVNTLYFG-EGQGGLNIWDVRSRKSATEWLLH-------EARINTIDFNPRNPNIMATSSTDGTACIWDLRS 399 (536)
Q Consensus 328 ~~l~~~~~~~~~l~~g-~~dg~i~i~d~~~~~~~~~~~~h-------~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~ 399 (536)
.+++++++| ++++++ ...+.+.++|.++.+.+..+... ...+.+|..+|.++.++++--..+.|-+.|...
T Consensus 81 ~~i~~s~DG-~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 81 RGIAVSPDG-KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEE--TT-TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred ceEEEcCCC-CEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 999999999 666665 46899999999999988877632 346788888887754555555558888888776
Q ss_pred CCCCCCCcceeecccCceeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCcceEEeccCC--CCc---eeee-eEEEEc--
Q 009380 400 MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFENTSMIHHNNQ--TGR---WISS-FRAIWG-- 470 (536)
Q Consensus 400 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~-s~dg~I~iwd~~~~~~~~~~~~~~~--~~~---~~~~-~~~~~s-- 470 (536)
.+ .................|+|+++|++++ ..++.|.++|..+.+....+..... .+. +... +...|.
T Consensus 160 ~~---~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~ 236 (369)
T PF02239_consen 160 PK---NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS 236 (369)
T ss_dssp SS---CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred cc---ccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec
Confidence 42 2233444556677889999999987765 4677899999988776665532111 000 0000 112232
Q ss_pred CCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEE----ccCCeEEEEecC
Q 009380 471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA----TGGGQVYVWTSD 536 (536)
Q Consensus 471 ~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasg----s~Dg~v~iW~~d 536 (536)
..+...++.-....+.+|+....+.+.++...... . -+..|| ++.+|... ...+.|.|+|.+
T Consensus 237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-l--Fi~thP-~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-L--FIKTHP-DSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS-----EE--T-T-SEEEEE-TT-SSHT-EEEEECC
T ss_pred cccceecccccCCccccchhhcCeEEEEEECCCCc-c--eeecCC-CCccEEeeccCCCCCceEEEEECc
Confidence 23333323222346778999999999999875444 3 356789 56888887 556889999864
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=3.9e-13 Score=125.28 Aligned_cols=213 Identities=13% Similarity=0.103 Sum_probs=165.0
Q ss_pred ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC--CeEEE
Q 009380 232 IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD--GLIRL 309 (536)
Q Consensus 232 ~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d--g~I~v 309 (536)
...+.|-.++... ..|++|-.+|.+.+|....+......+..+..+ ..+..+.-++..+..+++|+.. ..+.+
T Consensus 103 l~~~~I~gl~~~d----g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 103 LGTKSIKGLKLAD----GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred cccccccchhhcC----CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceee
Confidence 3466777777753 467788889999999998644323444444444 5577777788776778889998 89999
Q ss_pred EECCCCeEEEeec----------CCCceeEEEecCCC-CCEEEEEECCCeEEEEECCCC-ccceeEeccCCCeEEEEEec
Q 009380 310 MDAEKEVFDLVYS----------SEYAVFSLSQQPNN-VNTLYFGEGQGGLNIWDVRSR-KSATEWLLHEARINTIDFNP 377 (536)
Q Consensus 310 wd~~~~~~~~~~~----------~~~~i~~l~~~~~~-~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~i~~~p 377 (536)
||++..+.+..-. ..-.++++.|.+.. .+.|++++.-+.|++||.+.+ +++..+.....+|+++...|
T Consensus 178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p 257 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP 257 (412)
T ss_pred eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC
Confidence 9999874332211 12246788888761 278999999999999999976 45888887889999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380 378 RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH 453 (536)
Q Consensus 378 ~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~ 453 (536)
.+ +++++|..-|.+..||++.+. .....+.+..+.|.+|..+|.+.++++++.|..|+|||+.+.+.+..+.
T Consensus 258 ~g-n~Iy~gn~~g~l~~FD~r~~k---l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 258 SG-NFIYTGNTKGQLAKFDLRGGK---LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred CC-cEEEEecccchhheecccCce---eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence 77 899999999999999999864 1222355788999999999999999999999999999999866665543
No 232
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.2e-12 Score=127.38 Aligned_cols=282 Identities=12% Similarity=0.107 Sum_probs=190.5
Q ss_pred cccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEE
Q 009380 182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNIT 261 (536)
Q Consensus 182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~ 261 (536)
+......+..+|||+++... +-+.-.|++||+..-...+.+.....+..+..... |-.-++.-..|.+|-
T Consensus 50 ~p~ast~ik~s~DGqY~lAt---------G~YKP~ikvydlanLSLKFERhlDae~V~feiLsD-D~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLAT---------GTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSD-DYSKSVFLQNDRTIE 119 (703)
T ss_pred CccccceeEecCCCcEEEEe---------cccCCceEEEEcccceeeeeecccccceeEEEecc-chhhheEeecCceee
Confidence 44555678899999998853 55556888898744333333334444433333221 333344444566665
Q ss_pred EEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC-CceeEEEecCCCCCEE
Q 009380 262 FWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE-YAVFSLSQQPNNVNTL 340 (536)
Q Consensus 262 iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~-~~i~~l~~~~~~~~~l 340 (536)
+..-.. ... .+. -...-..++++.-. .-|+.++....|+-++++.|.+...+..+ +.++++..++-. .+|
T Consensus 120 fHak~G-----~hy-~~R-IP~~GRDm~y~~~s-cDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h-gLl 190 (703)
T KOG2321|consen 120 FHAKYG-----RHY-RTR-IPKFGRDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH-GLL 190 (703)
T ss_pred ehhhcC-----eee-eee-cCcCCccccccCCC-ccEEEeecCcceEEEEccccccccccccccccceeeeecCcc-ceE
Confidence 543321 111 111 11223456666554 45666666778999999999988777655 889999999987 799
Q ss_pred EEEECCCeEEEEECCCCccceeEec------cCC-----CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcce
Q 009380 341 YFGEGQGGLNIWDVRSRKSATEWLL------HEA-----RINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMK 409 (536)
Q Consensus 341 ~~g~~dg~i~i~d~~~~~~~~~~~~------h~~-----~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~ 409 (536)
++|+.+|.|..||.++...+.++.. |.+ .|+++.|..+| -.+++|..+|.|.|||+|+.+ +....
T Consensus 191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~---pl~~k 266 (703)
T KOG2321|consen 191 ACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASK---PLLVK 266 (703)
T ss_pred EecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCC---ceeec
Confidence 9999999999999998877666542 333 39999999876 789999999999999999853 23333
Q ss_pred eecccCceeEEEEccCC--CeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEE
Q 009380 410 VLSHKRAVHSAYFSPSG--SSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEV 487 (536)
Q Consensus 410 ~~~~~~~v~~l~~sp~g--~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v 487 (536)
-.+...+|..+.|.+.+ +.+++ .....++|||-.+++....+..... +.. +++-|++.+++++..+..+..
T Consensus 267 dh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~~----lND--~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 267 DHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTSD----LND--FCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred ccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccCC----cCc--eeeecCCceEEEecCCCccee
Confidence 33456688999998853 33443 3456799999999988877754332 222 456688889999999988877
Q ss_pred EcCCcc
Q 009380 488 ISPAQR 493 (536)
Q Consensus 488 ~d~~~~ 493 (536)
|-+...
T Consensus 340 yyiP~L 345 (703)
T KOG2321|consen 340 YYIPSL 345 (703)
T ss_pred EEcccc
Confidence 766543
No 233
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.53 E-value=3.9e-14 Score=128.83 Aligned_cols=221 Identities=14% Similarity=0.116 Sum_probs=158.3
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc
Q 009380 287 GIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH 366 (536)
Q Consensus 287 ~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h 366 (536)
-.+|+|+| +++++++.- .+.|-|.++-+...++..-..|.-+.|..+...+|.+...++.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g-~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCG-NYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCC-Ceeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 35799999 999999855 7888898887776666666778889999888677778889999999999998888888888
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCc---EEEEeC
Q 009380 367 EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDT---IGIWSG 443 (536)
Q Consensus 367 ~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~---I~iwd~ 443 (536)
...+.+++|+|+|.++|.+...|-.|.+|.+.+.+ ...+...+..+..++|+|+|++.+.++.-.. +.|...
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-----~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK-----GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC 165 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccce-----eEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence 89999999999998899999999999999998832 2222233456688999999999888875433 222222
Q ss_pred CCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC--CcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEE
Q 009380 444 VNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT--RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTL 521 (536)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d--g~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~l 521 (536)
.....+..+.... +....+.|+|||..|++-..- -.|..|.... .+ -.+.|+|.+ ++|
T Consensus 166 ~~W~ll~~f~~dT-----~DltgieWsPdg~~laVwd~~Leykv~aYe~~l-------------G~-k~v~wsP~~-qfl 225 (447)
T KOG4497|consen 166 KAWILLKEFKLDT-----IDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGL-------------GL-KFVEWSPCN-QFL 225 (447)
T ss_pred HHHHHHHhcCCCc-----ccccCceECCCCcEEEEecchhhheeeeeeecc-------------ce-eEEEecccc-ceE
Confidence 2222232222111 112227799999887764221 1222222111 11 357899964 999
Q ss_pred EEEccCCeEEEEe
Q 009380 522 AGATGGGQVYVWT 534 (536)
Q Consensus 522 asgs~Dg~v~iW~ 534 (536)
+.|+.|+.++|-+
T Consensus 226 avGsyD~~lrvln 238 (447)
T KOG4497|consen 226 AVGSYDQMLRVLN 238 (447)
T ss_pred Eeeccchhhhhhc
Confidence 9999999998743
No 234
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.53 E-value=2.6e-12 Score=115.62 Aligned_cols=226 Identities=19% Similarity=0.204 Sum_probs=161.3
Q ss_pred ccceEEeccccc---Cc-cccccccCCceEEEEEEec-CCcc-EEEEEeCCCcEEEEECCCCCCCCCceEEeccCC----
Q 009380 213 VGSCVDIGSLTL---KP-ENIARIMPGRITQMKFLPC-SDVR-MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL---- 282 (536)
Q Consensus 213 ~dg~v~lw~~~~---~~-~~~~~~~~~~I~~v~~~p~-~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~---- 282 (536)
..|.+.||++.. -+ ..+...-...++.+.|.-. .+|. .++-+...|+|.++..+.. .....+.+-+
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~----~ss~~L~~ls~~ki 119 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED----ESSVHLRGLSSKKI 119 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccc----eeeeeecccchhhh
Confidence 457888888632 22 1222333567888888743 2455 5666778899999988752 2222222211
Q ss_pred --CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE---EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC
Q 009380 283 --GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD---LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR 357 (536)
Q Consensus 283 --~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~---~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~ 357 (536)
....++.|++.+ ..++++..+|.+.+-+.....+. ....|+.+++...|+...++++++|+.||.+..||+|..
T Consensus 120 ~~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 120 SVVEALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred hheeeeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence 124578899888 88999999999986665554333 455788999999999999999999999999999999944
Q ss_pred c-ccee-EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCC-CeEEEEeC
Q 009380 358 K-SATE-WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSG-SSLATTSF 434 (536)
Q Consensus 358 ~-~~~~-~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~t~s~ 434 (536)
+ .+.. .+.|...|.+|.-+|..+.+++||+.|-.|++||.|+.. +++....-.+.|+.+.++|.- ..++.++.
T Consensus 199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~----kPl~~~~v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG----KPLFKAKVGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc----CccccCccccceEEEEecchhhhHHHHHHH
Confidence 3 3333 457999999999999888999999999999999999753 444444556999999999932 33444454
Q ss_pred CCcEEEEeCCCCC
Q 009380 435 DDTIGIWSGVNFE 447 (536)
Q Consensus 435 dg~I~iwd~~~~~ 447 (536)
-+-.+|-+.....
T Consensus 275 h~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 275 HNGAKILDSSDKV 287 (339)
T ss_pred hcCceEEEecccc
Confidence 4447777776543
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=3.7e-12 Score=130.10 Aligned_cols=220 Identities=14% Similarity=0.111 Sum_probs=138.5
Q ss_pred ceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC---CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEe
Q 009380 215 SCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL---GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQ 291 (536)
Q Consensus 215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~ 291 (536)
..|.++|.+.........+.+.+.+.+|+| ||+.|+..+.+ ..|.+||+.++ .. ..+....+.+.+..|+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSP--DG~~la~~s~~~~~~~I~~~dl~~g----~~-~~l~~~~g~~~~~~~S 248 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSP--DGTKLAYVSFESKKPVVYVHDLATG----RR-RVVANFKGSNSAPAWS 248 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcC--CCCEEEEEEccCCCcEEEEEECCCC----CE-EEeecCCCCccceEEC
Confidence 356666654333333445678899999999 99988877643 35999999863 22 2233334556789999
Q ss_pred cCCCCEE-EEEECCCeEEEE--ECCCCeEEEeecCCCceeEEEecCCCCCEEEEEE-CCCeEEEEEC--CCCccceeEec
Q 009380 292 QYCLSKI-FTSCYDGLIRLM--DAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDV--RSRKSATEWLL 365 (536)
Q Consensus 292 ~~~~~~l-~s~s~dg~I~vw--d~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~--~~~~~~~~~~~ 365 (536)
|++ +.| ++.+.+|...+| |+.++....+..+........|+|++ ..|+..+ .+|...+|.+ .++.. ..+..
T Consensus 249 PDG-~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~ 325 (427)
T PRK02889 249 PDG-RTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDG-RSIYFTSDRGGAPQIYRMPASGGAA-QRVTF 325 (427)
T ss_pred CCC-CEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCC-CEEEEEecCCCCcEEEEEECCCCce-EEEec
Confidence 999 655 467778876665 55566655555555556778999999 5555444 4566666654 44432 23322
Q ss_pred cCCCeEEEEEecCCCCEEEEEeCCC---cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC---cEE
Q 009380 366 HEARINTIDFNPRNPNIMATSSTDG---TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD---TIG 439 (536)
Q Consensus 366 h~~~i~~i~~~p~~~~~l~s~s~dg---~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg---~I~ 439 (536)
+........|+|+| ++|+..+.++ .|.+||+.++. ...+. .........|+|+|++|+.++.++ .+.
T Consensus 326 ~g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~-----~~~lt-~~~~~~~p~~spdg~~l~~~~~~~g~~~l~ 398 (427)
T PRK02889 326 TGSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQ-----VTALT-DTTRDESPSFAPNGRYILYATQQGGRSVLA 398 (427)
T ss_pred CCCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCC-----eEEcc-CCCCccCceECCCCCEEEEEEecCCCEEEE
Confidence 33344567899988 5666555443 59999998753 11122 223346789999999888877544 255
Q ss_pred EEeCCCCCcceEE
Q 009380 440 IWSGVNFENTSMI 452 (536)
Q Consensus 440 iwd~~~~~~~~~~ 452 (536)
+.++ ++.....+
T Consensus 399 ~~~~-~g~~~~~l 410 (427)
T PRK02889 399 AVSS-DGRIKQRL 410 (427)
T ss_pred EEEC-CCCceEEe
Confidence 5555 34333333
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.51 E-value=2.1e-11 Score=120.92 Aligned_cols=304 Identities=14% Similarity=0.129 Sum_probs=183.1
Q ss_pred cccccceEEecccccCcccccccc-CCce-EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380 210 KIEVGSCVDIGSLTLKPENIARIM-PGRI-TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISG 287 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~~~~~~~~~~-~~~I-~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~ 287 (536)
....+|.|.+.|...... +.+.. .+.+ ..+.|+| ||+++++.+.||.|.++|+.+ .+.+..++.-. ...+
T Consensus 11 ~~~~~~~v~viD~~t~~~-~~~i~~~~~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~----~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 11 VERGSGSVAVIDGATNKV-VARIPTGGAPHAGLKFSP--DGRYLYVANRDGTVSVIDLAT----GKVVATIKVGG-NPRG 82 (369)
T ss_dssp EEGGGTEEEEEETTT-SE-EEEEE-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTS----SSEEEEEE-SS-EEEE
T ss_pred EecCCCEEEEEECCCCeE-EEEEcCCCCceeEEEecC--CCCEEEEEcCCCeEEEEECCc----ccEEEEEecCC-Ccce
Confidence 345667888888644321 21221 2333 4577899 999999999999999999998 67777776544 4678
Q ss_pred EEEecCCCCEEEEEE-CCCeEEEEECCCCeEEEeec--------CCCceeEEEecCCCCCEEEEEE-CCCeEEEEECCCC
Q 009380 288 IVTQQYCLSKIFTSC-YDGLIRLMDAEKEVFDLVYS--------SEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSR 357 (536)
Q Consensus 288 l~~~~~~~~~l~s~s-~dg~I~vwd~~~~~~~~~~~--------~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~ 357 (536)
++++++| ++++++. ..+.+.++|.++.+...... ....+..+..++.. ..+++.- ..+.|.+.|....
T Consensus 83 i~~s~DG-~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 83 IAVSPDG-KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGR-PEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEE--TT-TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSS-SEEEEEETTTTEEEEEETTTS
T ss_pred EEEcCCC-CEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCC-CEEEEEEccCCeEEEEEeccc
Confidence 9999999 7777665 68999999999876655442 23467788888877 4455444 4589999998876
Q ss_pred ccce-eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee----cccCceeEE-------EEcc-
Q 009380 358 KSAT-EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL----SHKRAVHSA-------YFSP- 424 (536)
Q Consensus 358 ~~~~-~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~----~~~~~v~~l-------~~sp- 424 (536)
+.+. .............|.|++.+++++...+..|-++|..+.+ ....+. .|..++..+ .|.-
T Consensus 161 ~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k----~v~~i~~g~~p~~~~~~~~php~~g~vw~~~ 236 (369)
T PF02239_consen 161 KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK----LVALIDTGKKPHPGPGANFPHPGFGPVWATS 236 (369)
T ss_dssp SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE----EEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred cccceeeecccccccccccCcccceeeecccccceeEEEeeccce----EEEEeeccccccccccccccCCCcceEEeec
Confidence 5432 2223456778899999885556666677889999988753 111111 233333222 2222
Q ss_pred -CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE----cCCCcEEEEcCCccccceec
Q 009380 425 -SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG----NMTRTVEVISPAQRRSVATL 499 (536)
Q Consensus 425 -~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g----s~dg~I~v~d~~~~~~~~~l 499 (536)
.+...++.-..+.+.+||..+++.+..+...... . . +..+|+++++++. ...+.|.|+|..+.+.+.++
T Consensus 237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-l--F---i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i 310 (369)
T PF02239_consen 237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-L--F---IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTI 310 (369)
T ss_dssp BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--------EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-H
T ss_pred cccceecccccCCccccchhhcCeEEEEEECCCCc-c--e---eecCCCCccEEeeccCCCCCceEEEEECcCcceeEEE
Confidence 2333323333446778999999998888754322 1 1 4459999999998 34488999999999887777
Q ss_pred cCCceeeeeeeEeecCCCCCEEEEEc--cCCeEEEEec
Q 009380 500 QSPYISAIPCRFHAHPHQVGTLAGAT--GGGQVYVWTS 535 (536)
Q Consensus 500 ~~~~~~~~~~~~~~~p~~~~~lasgs--~Dg~v~iW~~ 535 (536)
....... ...+.|++ +|..+.... .+|.|.|||.
T Consensus 311 ~~~~~~~-~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 311 TPGPGKR-VVHMEFNP-DGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp HHHHT---EEEEEE-T-TSSEEEEEEE--TTEEEEEET
T ss_pred eccCCCc-EeccEECC-CCCEEEEEEecCCCEEEEEEC
Confidence 5322211 34678888 566544433 3447999985
No 237
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=4.5e-13 Score=129.48 Aligned_cols=170 Identities=15% Similarity=0.135 Sum_probs=131.8
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEec--cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC---------
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR--THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE--------- 315 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~--------- 315 (536)
.+--|+.|-..|.|.+.|....+ ...+.... -....|+|+.|-|.+..+++.+-.+|.+.+||.+-.
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~--~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFE--VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCcceEEeeccCceEEecchhhH--HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 56678888888999999877521 11111111 123679999999988788999999999999986420
Q ss_pred ------eEE--------------EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEE
Q 009380 316 ------VFD--------------LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDF 375 (536)
Q Consensus 316 ------~~~--------------~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~ 375 (536)
.+. ...-..+.|..++|+|++ .+|++.+.||.++|||..+.+.+..++.--+...|++|
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence 000 011134578999999988 89999999999999999998887777767788999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc
Q 009380 376 NPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP 424 (536)
Q Consensus 376 ~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp 424 (536)
+||| ++|++|++|..|.||.+...+ .+..-.+|+.+|+.++|+|
T Consensus 341 SPDG-KyIvtGGEDDLVtVwSf~erR----VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 341 SPDG-KYIVTGGEDDLVTVWSFEERR----VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cCCc-cEEEecCCcceEEEEEeccce----EEEeccccccceeeEeecc
Confidence 9998 799999999999999998742 4444558999999999983
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.49 E-value=1.1e-11 Score=127.00 Aligned_cols=215 Identities=12% Similarity=0.058 Sum_probs=144.5
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC---CeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---GLIRLMDAEKEVFDLVYSSEYAVFSLSQQP 334 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~ 334 (536)
..|.++|... .....+..+...+....|+|++ ++|+.++.+ ..|++||+.++....+..+...+.+++|+|
T Consensus 170 ~~l~~~d~~g-----~~~~~l~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 170 YELQVADYDG-----ANPQTITRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP 243 (417)
T ss_pred ceEEEEcCCC-----CCCEEeecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC
Confidence 3577777753 3344455667788999999999 888777654 479999999887766666667778899999
Q ss_pred CCCCEEEEEECCC--eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC--cEEEEeCCCCCCCCCCccee
Q 009380 335 NNVNTLYFGEGQG--GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG--TACIWDLRSMATDKPEPMKV 410 (536)
Q Consensus 335 ~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg--~i~iwdl~~~~~~~~~~~~~ 410 (536)
++..++++.+.++ .|++||+.++.. ..+..+........|+|++..++++...++ .|+++|+.+++ ...+
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-----~~~l 317 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-----VRRL 317 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-----EEEe
Confidence 9844445555444 588999887653 334444455567799998854444444444 57777877542 2333
Q ss_pred ecccCceeEEEEccCCCeEEEEeCCC---cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC---c
Q 009380 411 LSHKRAVHSAYFSPSGSSLATTSFDD---TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR---T 484 (536)
Q Consensus 411 ~~~~~~v~~l~~sp~g~~l~t~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg---~ 484 (536)
..+...+..+.|+|+|++|+.++.++ .|.+||+.++.. ..+.... . ...+.|+|+|++|+..+.++ .
T Consensus 318 ~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~---~---~~~p~~spdg~~l~~~~~~~~~~~ 390 (417)
T TIGR02800 318 TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTG---L---DESPSFAPNGRMILYATTRGGRGV 390 (417)
T ss_pred ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCC---C---CCCceECCCCCEEEEEEeCCCcEE
Confidence 34556677889999999999888776 799999877433 2222111 1 12257999999888776654 3
Q ss_pred EEEEcCC
Q 009380 485 VEVISPA 491 (536)
Q Consensus 485 I~v~d~~ 491 (536)
+.+++..
T Consensus 391 l~~~~~~ 397 (417)
T TIGR02800 391 LGLVSTD 397 (417)
T ss_pred EEEEECC
Confidence 5555543
No 239
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.8e-11 Score=125.38 Aligned_cols=235 Identities=13% Similarity=0.042 Sum_probs=145.4
Q ss_pred cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC-CC--eEEEEECCCCeEEEeecCCCceeEEEecCC
Q 009380 259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY-DG--LIRLMDAEKEVFDLVYSSEYAVFSLSQQPN 335 (536)
Q Consensus 259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~-dg--~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~ 335 (536)
.|.++|.+. .....+..+...+.+..|+|+| +.|+..+. ++ .|.+||+.++....+...........|+|+
T Consensus 199 ~l~i~d~dG-----~~~~~l~~~~~~~~~p~wSPDG-~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 199 QLMIADYDG-----YNEQMLLRSPEPLMSPAWSPDG-RKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPD 272 (448)
T ss_pred EEEEEeCCC-----CCceEeecCCCcccCceECCCC-CEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCC
Confidence 566777663 3334455567789999999999 77766554 33 588999988876555544455567899999
Q ss_pred CCCEEEEEECCCe--EEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCc--EEEEeCCCCCCCCCCcceee
Q 009380 336 NVNTLYFGEGQGG--LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGT--ACIWDLRSMATDKPEPMKVL 411 (536)
Q Consensus 336 ~~~~l~~g~~dg~--i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~--i~iwdl~~~~~~~~~~~~~~ 411 (536)
+..++++...+|. |+++|+.+++. ..+..+.......+|+|++..+++++..++. |+++|+.+++ ...+.
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-----~~~Lt 346 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK-----VSRLT 346 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-----EEEEe
Confidence 9545555666664 88889887654 3444455566788999998655555544444 6666776542 22222
Q ss_pred cccCceeEEEEccCCCeEEEEeCC-C--cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-C--cE
Q 009380 412 SHKRAVHSAYFSPSGSSLATTSFD-D--TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-R--TV 485 (536)
Q Consensus 412 ~~~~~v~~l~~sp~g~~l~t~s~d-g--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-g--~I 485 (536)
..........|+|+|++|+..+.+ + .|.++|+.+++.. .+.... . .....|+|+|+.|+..+.+ + .+
T Consensus 347 ~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~-----d~~ps~spdG~~I~~~~~~~g~~~l 419 (448)
T PRK04792 347 FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-L-----DESPSVAPNGTMVIYSTTYQGKQVL 419 (448)
T ss_pred cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-C-----CCCceECCCCCEEEEEEecCCceEE
Confidence 222233457899999988877653 3 4666787766532 221111 0 1125699999987765543 3 37
Q ss_pred EEEcCCccccceeccCCceeeeeeeEeecC
Q 009380 486 EVISPAQRRSVATLQSPYISAIPCRFHAHP 515 (536)
Q Consensus 486 ~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p 515 (536)
.+++.. +.....+..+.... ...+|+|
T Consensus 420 ~~~~~~-G~~~~~l~~~~g~~--~~p~Wsp 446 (448)
T PRK04792 420 AAVSID-GRFKARLPAGQGEV--KSPAWSP 446 (448)
T ss_pred EEEECC-CCceEECcCCCCCc--CCCccCC
Confidence 777774 44555554332211 2345665
No 240
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.47 E-value=2.1e-12 Score=116.35 Aligned_cols=157 Identities=15% Similarity=0.245 Sum_probs=107.7
Q ss_pred eEEEecCCCCCEEEEEEC---------CCeEEEEECCC-CccceeEec-cCCCeEEEEEecCCCCEEEE-EeCCCcEEEE
Q 009380 328 FSLSQQPNNVNTLYFGEG---------QGGLNIWDVRS-RKSATEWLL-HEARINTIDFNPRNPNIMAT-SSTDGTACIW 395 (536)
Q Consensus 328 ~~l~~~~~~~~~l~~g~~---------dg~i~i~d~~~-~~~~~~~~~-h~~~i~~i~~~p~~~~~l~s-~s~dg~i~iw 395 (536)
..+.|+++|..+++.... -|...+|.++. +..+..+.. ..++|.+++|+|++..++++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467888888444444431 23456666543 233555543 34579999999988544333 4467899999
Q ss_pred eCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC---CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCC
Q 009380 396 DLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD 472 (536)
Q Consensus 396 dl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 472 (536)
|++. ...... +...++.+.|+|+|++|++++.+ |.|.+||+++.+.+....+.. +..+.|+|+
T Consensus 89 d~~~------~~i~~~-~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-------~t~~~WsPd 154 (194)
T PF08662_consen 89 DVKG------KKIFSF-GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-------ATDVEWSPD 154 (194)
T ss_pred cCcc------cEeEee-cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-------EEEEEEcCC
Confidence 9973 222222 35678899999999999998754 569999999877776664432 234789999
Q ss_pred CCEEEEEcC------CCcEEEEcCCccccceec
Q 009380 473 DSCVFIGNM------TRTVEVISPAQRRSVATL 499 (536)
Q Consensus 473 g~~l~~gs~------dg~I~v~d~~~~~~~~~l 499 (536)
|++|+++.. |+.++||+..+ +.+...
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~G-~~l~~~ 186 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQG-RLLYKK 186 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEecC-eEeEec
Confidence 999998864 67899999864 455443
No 241
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.47 E-value=4.5e-11 Score=115.26 Aligned_cols=313 Identities=12% Similarity=0.132 Sum_probs=206.4
Q ss_pred cceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC------
Q 009380 184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL------ 257 (536)
Q Consensus 184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d------ 257 (536)
-.+..+.+||-|.+++.....+++ +|.-.... .+.+.-...|..+.|+| .++||.+=+..
T Consensus 33 ~p~~~~~~SP~G~~l~~~~~~~V~-----------~~~g~~~~-~l~~~~~~~V~~~~fSP--~~kYL~tw~~~pi~~pe 98 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEHAAGVE-----------CWGGPSKA-KLVRFRHPDVKYLDFSP--NEKYLVTWSREPIIEPE 98 (561)
T ss_pred cchhheeecCcchheehhhccceE-----------Eccccchh-heeeeecCCceecccCc--ccceeeeeccCCccChh
Confidence 456788999999999977544444 44432222 22344445689999999 99999986433
Q ss_pred ---------CcEEEEECCCCCCCCCceEEeccCCCC--EE-EEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec---
Q 009380 258 ---------GNITFWNLDSQQDEDNGIYLFRTHLGP--IS-GIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS--- 322 (536)
Q Consensus 258 ---------g~v~iwd~~~~~~~~~~~~~~~~h~~~--V~-~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~--- 322 (536)
.++.+||..+ +..+..+..-..+ .+ -+.|+-+. .+++-. ....+.|+++ +......--
T Consensus 99 ~e~sp~~~~n~~~vwd~~s----g~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~~~p~~~l 171 (561)
T COG5354 99 IEISPFTSKNNVFVWDIAS----GMIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIEEHPFKNL 171 (561)
T ss_pred hccCCccccCceeEEeccC----ceeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCccccCchhhc
Confidence 3599999998 7788888776665 55 67888876 665555 4557999997 433221111
Q ss_pred CCCceeEEEecCCCC-CEEEE-----EECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC--------
Q 009380 323 SEYAVFSLSQQPNNV-NTLYF-----GEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST-------- 388 (536)
Q Consensus 323 ~~~~i~~l~~~~~~~-~~l~~-----g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~-------- 388 (536)
....|....|+|.+. ..|+. .+..+.+++|.+..+..+.+-....-.=..+.|++.|..+++-.-.
T Consensus 172 r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsy 251 (561)
T COG5354 172 RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSY 251 (561)
T ss_pred cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccce
Confidence 135788889998742 23333 3467899999998776655544344444568888877543332211
Q ss_pred --CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe--CCCcEEEEeCCCCCcceEEeccCCCCceeee
Q 009380 389 --DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS--FDDTIGIWSGVNFENTSMIHHNNQTGRWISS 464 (536)
Q Consensus 389 --dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 464 (536)
...++|++++... .... ....++|...+|.|.++.+++++ .+..+.++|++.. ....+. ....-+
T Consensus 252 fgesnLyl~~~~e~~----i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P----e~~rNT- 320 (561)
T COG5354 252 FGESNLYLLRITERS----IPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP----EQKRNT- 320 (561)
T ss_pred eccceEEEEeecccc----ccee-ccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC----Cccccc-
Confidence 2468888887522 2222 26689999999999888777765 6788999998764 222221 111111
Q ss_pred eEEEEcCCCCEEEEEcCC---CcEEEEcCCccccce-eccCCceeeeeeeEeecCCCCCEEEEEc------cCCeEEEEe
Q 009380 465 FRAIWGWDDSCVFIGNMT---RTVEVISPAQRRSVA-TLQSPYISAIPCRFHAHPHQVGTLAGAT------GGGQVYVWT 534 (536)
Q Consensus 465 ~~~~~s~~g~~l~~gs~d---g~I~v~d~~~~~~~~-~l~~~~~~~~~~~~~~~p~~~~~lasgs------~Dg~v~iW~ 534 (536)
..|+|.+++++.++.+ |.|.+||..+...+. .+.+... ....|+| ++.++.+.. .|..|.||+
T Consensus 321 --~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~----s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 321 --IFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT----SYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred --ccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc----eEeeccC-CceEEEecCCCcccccCcceEEEE
Confidence 5689999998886655 789999998765544 5544222 2346888 667777654 678899998
Q ss_pred c
Q 009380 535 S 535 (536)
Q Consensus 535 ~ 535 (536)
+
T Consensus 394 v 394 (561)
T COG5354 394 V 394 (561)
T ss_pred e
Confidence 6
No 242
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=3.9e-11 Score=109.29 Aligned_cols=175 Identities=17% Similarity=0.195 Sum_probs=130.2
Q ss_pred cceEEecccccCcccc-ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC--CCEEEEEE
Q 009380 214 GSCVDIGSLTLKPENI-ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL--GPISGIVT 290 (536)
Q Consensus 214 dg~v~lw~~~~~~~~~-~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~--~~V~~l~~ 290 (536)
.+.|.+||- .+...+ .-....+|.+|.+.+ ..|++.- .+.|.||...+. .+.++.+..-. ..+.+++-
T Consensus 74 pNkviIWDD-~k~~~i~el~f~~~I~~V~l~r----~riVvvl-~~~I~VytF~~n---~k~l~~~et~~NPkGlC~~~~ 144 (346)
T KOG2111|consen 74 PNKVIIWDD-LKERCIIELSFNSEIKAVKLRR----DRIVVVL-ENKIYVYTFPDN---PKLLHVIETRSNPKGLCSLCP 144 (346)
T ss_pred CceEEEEec-ccCcEEEEEEeccceeeEEEcC----CeEEEEe-cCeEEEEEcCCC---hhheeeeecccCCCceEeecC
Confidence 468999993 443333 344589999999987 4565555 468999999853 34444443322 22333333
Q ss_pred ecCCCCEEEE-EECCCeEEEEECCCCeE---EEeecCCCceeEEEecCCCCCEEEEEECCCe-EEEEECCCCccceeEec
Q 009380 291 QQYCLSKIFT-SCYDGLIRLMDAEKEVF---DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG-LNIWDVRSRKSATEWLL 365 (536)
Q Consensus 291 ~~~~~~~l~s-~s~dg~I~vwd~~~~~~---~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~-i~i~d~~~~~~~~~~~~ 365 (536)
+... .+|+. |-.-|.|+|-|+..... ..+..|+..|.|++.+.+| .++++++..|+ |+|||..+|..++++..
T Consensus 145 ~~~k-~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 145 TSNK-SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred CCCc-eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 3222 33333 33469999999987655 7788999999999999999 89999999997 79999999999999873
Q ss_pred --cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 009380 366 --HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSM 400 (536)
Q Consensus 366 --h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~ 400 (536)
....|.+|+|+|+. .+|+++|..|+|+||.++..
T Consensus 223 G~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecC
Confidence 34679999999977 79999999999999999874
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=4.1e-11 Score=123.12 Aligned_cols=222 Identities=10% Similarity=0.012 Sum_probs=144.2
Q ss_pred cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC---CeEEEEECCCCeEEEeecCCCceeEEEecCC
Q 009380 259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPN 335 (536)
Q Consensus 259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~ 335 (536)
.|.++|.+. .....+..+...+....|+|+| +.|+..+.+ ..|.+||+.++....+....+.+....|+|+
T Consensus 180 ~l~~~d~~g-----~~~~~l~~~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpD 253 (430)
T PRK00178 180 TLQRSDYDG-----ARAVTLLQSREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPD 253 (430)
T ss_pred EEEEECCCC-----CCceEEecCCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCC
Confidence 466777763 3344555677889999999999 777766544 3699999998877666655566678999999
Q ss_pred CCCEEEEEECCC--eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC--cEEEEeCCCCCCCCCCcceee
Q 009380 336 NVNTLYFGEGQG--GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG--TACIWDLRSMATDKPEPMKVL 411 (536)
Q Consensus 336 ~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg--~i~iwdl~~~~~~~~~~~~~~ 411 (536)
+..++++...+| .|++||+.+++. ..+..+........|+|++..++++...+| .|+++|+.+++ ...+.
T Consensus 254 G~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-----~~~lt 327 (430)
T PRK00178 254 GSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-----AERVT 327 (430)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-----EEEee
Confidence 844444555555 688889988764 344445555677899999865555554444 47777776643 11121
Q ss_pred cccCceeEEEEccCCCeEEEEeCC-C--cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC---CcE
Q 009380 412 SHKRAVHSAYFSPSGSSLATTSFD-D--TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT---RTV 485 (536)
Q Consensus 412 ~~~~~v~~l~~sp~g~~l~t~s~d-g--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d---g~I 485 (536)
..........|+|+|++|+..+.+ + .|.+||+.+++.. .+.... .. ....|+|+|+.|+..+.+ ..|
T Consensus 328 ~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~---~~---~~p~~spdg~~i~~~~~~~g~~~l 400 (430)
T PRK00178 328 FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTS---LD---ESPSVAPNGTMLIYATRQQGRGVL 400 (430)
T ss_pred cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCCC---CC---CCceECCCCCEEEEEEecCCceEE
Confidence 112233457899999998887653 3 4888998876542 222211 11 125799999998776544 347
Q ss_pred EEEcCCccccceecc
Q 009380 486 EVISPAQRRSVATLQ 500 (536)
Q Consensus 486 ~v~d~~~~~~~~~l~ 500 (536)
.+++.... ....+.
T Consensus 401 ~~~~~~g~-~~~~l~ 414 (430)
T PRK00178 401 MLVSINGR-VRLPLP 414 (430)
T ss_pred EEEECCCC-ceEECc
Confidence 77777544 333443
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=5.8e-11 Score=117.77 Aligned_cols=279 Identities=14% Similarity=0.180 Sum_probs=169.7
Q ss_pred EEEEeCC----CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC----CCeEEEEECCC--CeEEEe
Q 009380 251 VVAGSKL----GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY----DGLIRLMDAEK--EVFDLV 320 (536)
Q Consensus 251 l~tg~~d----g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~----dg~I~vwd~~~--~~~~~~ 320 (536)
+++|+.. +.|.+|+++........+..+ .-......++++|++ ++|+++.. ++.|..|++.. +.+..+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~-~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDG-RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTS-SEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCC-CEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence 4455555 789999995432112222222 234456778999998 89998877 57999998875 444332
Q ss_pred e---cCCCceeEEEecCCCCCEEEEEE-CCCeEEEEECCCC-cccee---Ee----------ccCCCeEEEEEecCCCCE
Q 009380 321 Y---SSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSR-KSATE---WL----------LHEARINTIDFNPRNPNI 382 (536)
Q Consensus 321 ~---~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~-~~~~~---~~----------~h~~~i~~i~~~p~~~~~ 382 (536)
. ........++++|++ .+|+++. .+|.|.++++... ..... +. .......++.|+|++..+
T Consensus 80 ~~~~~~g~~p~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v 158 (345)
T PF10282_consen 80 NSVPSGGSSPCHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV 158 (345)
T ss_dssp EEEEESSSCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred eeeccCCCCcEEEEEecCC-CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence 2 244566789999998 6776665 5899999999873 33221 21 123457899999998544
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCcce-eecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCC--CCC--cceEEecc-
Q 009380 383 MATSSTDGTACIWDLRSMATDKPEPMK-VLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGV--NFE--NTSMIHHN- 455 (536)
Q Consensus 383 l~s~s~dg~i~iwdl~~~~~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~--~~~--~~~~~~~~- 455 (536)
+++.-....|.+|++......-..... .........++.|+|+++++++.+ .++.|.+|++. ++. ....+...
T Consensus 159 ~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 159 YVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp EEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred EEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence 444434568999999774311000111 124566789999999999887665 57789999987 332 12222211
Q ss_pred -CCCCceeeeeEEEEcCCCCEEEEEcC-CCcEEEEcCCc--cc--cceeccCCceeeeeeeEeecCCCCCEEEEEc-cCC
Q 009380 456 -NQTGRWISSFRAIWGWDDSCVFIGNM-TRTVEVISPAQ--RR--SVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGG 528 (536)
Q Consensus 456 -~~~~~~~~~~~~~~s~~g~~l~~gs~-dg~I~v~d~~~--~~--~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs-~Dg 528 (536)
...+. ...-.+.++|||++|++++. .+.|.+|++.. +. .+..+... ...+..+.++| ++++|++++ .++
T Consensus 239 ~~~~~~-~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~-~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 239 EGFTGE-NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSP-DGRYLYVANQDSN 314 (345)
T ss_dssp TTSCSS-SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-T-TSSEEEEEETTTT
T ss_pred cccccc-CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC--CCCccEEEEeC-CCCEEEEEecCCC
Confidence 11111 12233668999999888765 46799999832 32 22222221 22345788888 567777665 778
Q ss_pred eEEEEecC
Q 009380 529 QVYVWTSD 536 (536)
Q Consensus 529 ~v~iW~~d 536 (536)
.|.+|++|
T Consensus 315 ~v~vf~~d 322 (345)
T PF10282_consen 315 TVSVFDID 322 (345)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEe
Confidence 99999864
No 245
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.45 E-value=1.4e-10 Score=115.17 Aligned_cols=276 Identities=12% Similarity=0.174 Sum_probs=173.0
Q ss_pred ccceEEecccccCccccccc----cCCceEEEEEEecCCccEEEEEeC----CCcEEEEECCCCCCCCCceEEeccCCCC
Q 009380 213 VGSCVDIGSLTLKPENIARI----MPGRITQMKFLPCSDVRMVVAGSK----LGNITFWNLDSQQDEDNGIYLFRTHLGP 284 (536)
Q Consensus 213 ~dg~v~lw~~~~~~~~~~~~----~~~~I~~v~~~p~~~~~~l~tg~~----dg~v~iwd~~~~~~~~~~~~~~~~h~~~ 284 (536)
..+.|..|+++.....+... .......++++| ++++|.+... +|.|..|.+.........+.........
T Consensus 11 ~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~--~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~ 88 (345)
T PF10282_consen 11 KGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP--DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSS 88 (345)
T ss_dssp SSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T--TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSC
T ss_pred CCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe--CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCC
Confidence 33677777774333322211 245567789999 8888888866 5799999988632112333344434556
Q ss_pred EEEEEEecCCCCEEEEEEC-CCeEEEEECCC-CeEEEe---ec-----------CCCceeEEEecCCCCCEEEEEE-CCC
Q 009380 285 ISGIVTQQYCLSKIFTSCY-DGLIRLMDAEK-EVFDLV---YS-----------SEYAVFSLSQQPNNVNTLYFGE-GQG 347 (536)
Q Consensus 285 V~~l~~~~~~~~~l~s~s~-dg~I~vwd~~~-~~~~~~---~~-----------~~~~i~~l~~~~~~~~~l~~g~-~dg 347 (536)
...++++|++ .+|+++.+ +|.|.++++.. +.+... .. ......++.++|++ +++++.. ...
T Consensus 89 p~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D 166 (345)
T PF10282_consen 89 PCHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGAD 166 (345)
T ss_dssp EEEEEECTTS-SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTT
T ss_pred cEEEEEecCC-CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecCCC
Confidence 6789999999 88888875 89999999986 433222 21 22456789999998 6666654 345
Q ss_pred eEEEEECCCCcc-c---eeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc--eee----cccCc
Q 009380 348 GLNIWDVRSRKS-A---TEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM--KVL----SHKRA 416 (536)
Q Consensus 348 ~i~i~d~~~~~~-~---~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~--~~~----~~~~~ 416 (536)
.|.+|++..... + ..+. .....-..+.|+|++..++++...++.|.+|++........... ... .....
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 899999976552 2 2222 34566789999999866667777789999999883221000111 111 11226
Q ss_pred eeEEEEccCCCeEEEEe-CCCcEEEEeCCCC-CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC-CCcEEEEcC--C
Q 009380 417 VHSAYFSPSGSSLATTS-FDDTIGIWSGVNF-ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM-TRTVEVISP--A 491 (536)
Q Consensus 417 v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~-dg~I~v~d~--~ 491 (536)
...|.++|+|++|+++. ..+.|.+|++... ..+..+......+..... +.++|+|++|++++. ++.|.+|++ .
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~--~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRH--FAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEE--EEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccE--EEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 78899999999888776 5678999999432 233333222112322222 667999999998875 478999976 4
Q ss_pred ccc
Q 009380 492 QRR 494 (536)
Q Consensus 492 ~~~ 494 (536)
+|.
T Consensus 325 tG~ 327 (345)
T PF10282_consen 325 TGK 327 (345)
T ss_dssp TTE
T ss_pred CCc
Confidence 553
No 246
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.45 E-value=3.7e-12 Score=116.83 Aligned_cols=247 Identities=14% Similarity=0.186 Sum_probs=170.4
Q ss_pred ccceeeeecCCCCcccccccccccccccccccceEEecccccCcc------cccccc------------CCceEEEEEEe
Q 009380 183 FNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE------NIARIM------------PGRITQMKFLP 244 (536)
Q Consensus 183 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~------~~~~~~------------~~~I~~v~~~p 244 (536)
.+-+.++.|..+|..|++ +..+|.|.++.-..... ...+.| ...|..+.|.+
T Consensus 25 adiis~vef~~~Ge~Lat----------GdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~ 94 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLAT----------GDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD 94 (433)
T ss_pred hcceeeEEeecccceEee----------cCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecC
Confidence 467889999999999994 46667777775321110 111222 46799999999
Q ss_pred cCCccEEEEEeCCCcEEEEECCCCCCCC-------------------------------CceEE-eccCCCCEEEEEEec
Q 009380 245 CSDVRMVVAGSKLGNITFWNLDSQQDED-------------------------------NGIYL-FRTHLGPISGIVTQQ 292 (536)
Q Consensus 245 ~~~~~~l~tg~~dg~v~iwd~~~~~~~~-------------------------------~~~~~-~~~h~~~V~~l~~~~ 292 (536)
..+...++..+.|.+|++|.+....... .+.+. -.+|+-.|++|.++.
T Consensus 95 ~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns 174 (433)
T KOG1354|consen 95 DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS 174 (433)
T ss_pred CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC
Confidence 6666778888899999999987432100 00011 135788899999999
Q ss_pred CCCCEEEEEECCCeEEEEECCC--CeE--EEeec-----CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc----
Q 009380 293 YCLSKIFTSCYDGLIRLMDAEK--EVF--DLVYS-----SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS---- 359 (536)
Q Consensus 293 ~~~~~l~s~s~dg~I~vwd~~~--~~~--~~~~~-----~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~---- 359 (536)
|. ..++++. |=.|.+|+++- +.+ .-+.. ...-|++..|+|..-++++-.+..|+|++.|+|....
T Consensus 175 D~-Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 175 DK-ETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred cc-ceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence 97 7777775 77899999874 222 22222 2356899999999888899999999999999995322
Q ss_pred ceeEe------------ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee-eccc------------
Q 009380 360 ATEWL------------LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV-LSHK------------ 414 (536)
Q Consensus 360 ~~~~~------------~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~-~~~~------------ 414 (536)
...+. .--..|..+.|++.| +++++-+. -+|++||+.... .+..+ .-|.
T Consensus 253 sKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltvk~wD~nme~----~pv~t~~vh~~lr~kLc~lYEn 326 (433)
T KOG1354|consen 253 SKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTVKLWDLNMEA----KPVETYPVHEYLRSKLCSLYEN 326 (433)
T ss_pred hhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ceeEEEeccccC----CcceEEeehHhHHHHHHHHhhc
Confidence 11111 122458899999977 78887654 589999996532 22222 2221
Q ss_pred Cc---eeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 009380 415 RA---VHSAYFSPSGSSLATTSFDDTIGIWSGVNFE 447 (536)
Q Consensus 415 ~~---v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~ 447 (536)
.. -..++|+.++.+++||++.+..++|++..+.
T Consensus 327 D~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 327 DAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred cchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 12 2458899899999999999999999976553
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.45 E-value=2.7e-11 Score=124.07 Aligned_cols=212 Identities=15% Similarity=0.155 Sum_probs=142.7
Q ss_pred ceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC---CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEe
Q 009380 215 SCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL---GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQ 291 (536)
Q Consensus 215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~ 291 (536)
..|.++|........+..+...+.+.+|+| +|++|+.+... ..|++|++.++ . ...+..+.+.+.++.|+
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Sp--dg~~la~~~~~~~~~~i~v~d~~~g----~-~~~~~~~~~~~~~~~~s 242 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSP--DGQKLAYVSFESGKPEIYVQDLATG----Q-REKVASFPGMNGAPAFS 242 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCC--CCCEEEEEEcCCCCcEEEEEECCCC----C-EEEeecCCCCccceEEC
Confidence 356677765443444445566799999999 99999887654 47999999862 2 23334455667789999
Q ss_pred cCCCCEE-EEEECCC--eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEEC-CC--eEEEEECCCCccceeEec
Q 009380 292 QYCLSKI-FTSCYDG--LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEG-QG--GLNIWDVRSRKSATEWLL 365 (536)
Q Consensus 292 ~~~~~~l-~s~s~dg--~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~ 365 (536)
|++ +.| ++.+.++ .|.+||+.++....+..+........|+|++ ..|++.+. ++ .|+++|+.+++. ..+..
T Consensus 243 pDg-~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~ 319 (417)
T TIGR02800 243 PDG-SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGEV-RRLTF 319 (417)
T ss_pred CCC-CEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCE-EEeec
Confidence 998 655 4555544 5889999988776666665556678999998 56655443 33 688888877653 34444
Q ss_pred cCCCeEEEEEecCCCCEEEEEeCCC---cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC---cEE
Q 009380 366 HEARINTIDFNPRNPNIMATSSTDG---TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD---TIG 439 (536)
Q Consensus 366 h~~~i~~i~~~p~~~~~l~s~s~dg---~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg---~I~ 439 (536)
+...+..+.|+|++ .+++.++.++ .|.+||+.++. . .............|+|+|++|+..+.++ .+.
T Consensus 320 ~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~-----~-~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~ 392 (417)
T TIGR02800 320 RGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGG-----E-RVLTDTGLDESPSFAPNGRMILYATTRGGRGVLG 392 (417)
T ss_pred CCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCC-----e-EEccCCCCCCCceECCCCCEEEEEEeCCCcEEEE
Confidence 56667788999988 5666666554 78899987642 1 1111122345678999999888877654 345
Q ss_pred EEeC
Q 009380 440 IWSG 443 (536)
Q Consensus 440 iwd~ 443 (536)
+++.
T Consensus 393 ~~~~ 396 (417)
T TIGR02800 393 LVST 396 (417)
T ss_pred EEEC
Confidence 5553
No 248
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.44 E-value=5.4e-12 Score=113.55 Aligned_cols=229 Identities=13% Similarity=0.084 Sum_probs=159.9
Q ss_pred ccccceEEecccccCcc-------ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC
Q 009380 211 IEVGSCVDIGSLTLKPE-------NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG 283 (536)
Q Consensus 211 ~~~dg~v~lw~~~~~~~-------~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~ 283 (536)
....|+|.++....... ...+.....-.++.|++ .+.-++++..+|.+.+-+..... -+.+..++.|.-
T Consensus 91 a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~--~~~~i~vs~s~G~~~~v~~t~~~--le~vq~wk~He~ 166 (339)
T KOG0280|consen 91 AHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDIST--SGTKIFVSDSRGSISGVYETEMV--LEKVQTWKVHEF 166 (339)
T ss_pred ccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeec--cCceEEEEcCCCcEEEEecceee--eeecccccccce
Confidence 35556777776533221 11111122356788999 78889999999999955544321 234457899999
Q ss_pred CEEEEEEecCCCCEEEEEECCCeEEEEECCC-CeE--EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC-Ccc
Q 009380 284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-EVF--DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS-RKS 359 (536)
Q Consensus 284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-~~~--~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~ 359 (536)
.++...|+...++++++|+.|+.+..||++- +.+ .....|...|.+|.-+|..+.++++|+.|-.|++||.|+ +++
T Consensus 167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 9999999998889999999999999999993 322 234468899999999998889999999999999999994 566
Q ss_pred ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee-ecccCceeEEEEccCCCeEEEEe-CCCc
Q 009380 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV-LSHKRAVHSAYFSPSGSSLATTS-FDDT 437 (536)
Q Consensus 360 ~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~-~~~~~~v~~l~~sp~g~~l~t~s-~dg~ 437 (536)
+..-. -.+.|..+.++|.-.+.++.++.-.-.+|.+...........+.. ..|.+-+....|......|+||+ +|..
T Consensus 247 l~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~ 325 (339)
T KOG0280|consen 247 LFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKK 325 (339)
T ss_pred cccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccc
Confidence 54443 458899999999654444555555557888887654221112222 25777777777765556788876 5666
Q ss_pred EE-EEeCC
Q 009380 438 IG-IWSGV 444 (536)
Q Consensus 438 I~-iwd~~ 444 (536)
|+ +|-.-
T Consensus 326 ~~~~Wl~~ 333 (339)
T KOG0280|consen 326 IRQLWLHI 333 (339)
T ss_pred eeeeeeec
Confidence 44 66443
No 249
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=1.2e-11 Score=111.46 Aligned_cols=162 Identities=14% Similarity=0.176 Sum_probs=115.5
Q ss_pred eeecCCCCcccccccccccccccccccceEEecccccC--ccccccc-cCCceEEEEEEecCCccEEEE--EeCCCcEEE
Q 009380 188 TCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK--PENIARI-MPGRITQMKFLPCSDVRMVVA--GSKLGNITF 262 (536)
Q Consensus 188 ~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~--~~~~~~~-~~~~I~~v~~~p~~~~~~l~t--g~~dg~v~i 262 (536)
.+.+++.|..|+.........-....-|...||.+... +...... ..+.|.+++|+| +++.+|+ |..++.|.+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP--~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP--NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc--CCCEEEEEEccCCcccEE
Confidence 45688999988866553322222334456677766333 2333333 345799999999 8877644 456789999
Q ss_pred EECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC---CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCE
Q 009380 263 WNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNT 339 (536)
Q Consensus 263 wd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 339 (536)
||+. ...+..+. ...+..|.|+|+| ++|++++.+ |.|.+||+++.+......|. .++.++|+|+| ++
T Consensus 88 yd~~-----~~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdG-r~ 157 (194)
T PF08662_consen 88 YDVK-----GKKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDG-RY 157 (194)
T ss_pred EcCc-----ccEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCC-CE
Confidence 9996 45666664 5678899999999 999988754 67999999988777666655 47899999999 77
Q ss_pred EEEEEC------CCeEEEEECCCCcccee
Q 009380 340 LYFGEG------QGGLNIWDVRSRKSATE 362 (536)
Q Consensus 340 l~~g~~------dg~i~i~d~~~~~~~~~ 362 (536)
|++++. |..++||+.. |+.+..
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEEEEeccceeccccEEEEEec-CeEeEe
Confidence 777663 6789999974 555443
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=8.6e-11 Score=120.71 Aligned_cols=212 Identities=16% Similarity=0.081 Sum_probs=136.4
Q ss_pred eEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC---CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec
Q 009380 216 CVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL---GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ 292 (536)
Q Consensus 216 ~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 292 (536)
.|.++|.+.........+...+....|+| ||+.|+..+.+ ..|.+|++.++ . ...+....+.+....|+|
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSp--DG~~la~~s~~~~~~~l~~~~l~~g----~-~~~l~~~~g~~~~~~~Sp 252 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSP--DGKRIAYVSFEQKRPRIFVQNLDTG----R-REQITNFEGLNGAPAWSP 252 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECC--CCCEEEEEEcCCCCCEEEEEECCCC----C-EEEccCCCCCcCCeEECC
Confidence 46666665443333445677899999999 99988876543 36889999863 2 222333334456789999
Q ss_pred CCCCEEE-EEECCC--eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEE-CCC--eEEEEECCCCccceeEecc
Q 009380 293 YCLSKIF-TSCYDG--LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE-GQG--GLNIWDVRSRKSATEWLLH 366 (536)
Q Consensus 293 ~~~~~l~-s~s~dg--~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~-~dg--~i~i~d~~~~~~~~~~~~h 366 (536)
+| +.|+ +.+.+| .|.+||+.++....+..+........|+|++ ..|+..+ .+| .|+++|+.+++.. .+...
T Consensus 253 DG-~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~ 329 (430)
T PRK00178 253 DG-SKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDG-RTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFV 329 (430)
T ss_pred CC-CEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCC-CEEEEEECCCCCceEEEEECCCCCEE-EeecC
Confidence 99 6655 555555 6888899988877666666667778999998 5554444 333 5777888777642 22222
Q ss_pred CCCeEEEEEecCCCCEEEEEe-CCC--cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-C--cEEE
Q 009380 367 EARINTIDFNPRNPNIMATSS-TDG--TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-D--TIGI 440 (536)
Q Consensus 367 ~~~i~~i~~~p~~~~~l~s~s-~dg--~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-g--~I~i 440 (536)
........|+|++. .++..+ .++ .|.+||+.++. . ....+........|+|+|+.|+..+.+ + .|.+
T Consensus 330 ~~~~~~~~~Spdg~-~i~~~~~~~~~~~l~~~dl~tg~-----~-~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~ 402 (430)
T PRK00178 330 GNYNARPRLSADGK-TLVMVHRQDGNFHVAAQDLQRGS-----V-RILTDTSLDESPSVAPNGTMLIYATRQQGRGVLML 402 (430)
T ss_pred CCCccceEECCCCC-EEEEEEccCCceEEEEEECCCCC-----E-EEccCCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 23344578999885 554444 333 47888988753 1 111122223356899999988877654 2 4667
Q ss_pred EeCC
Q 009380 441 WSGV 444 (536)
Q Consensus 441 wd~~ 444 (536)
+++.
T Consensus 403 ~~~~ 406 (430)
T PRK00178 403 VSIN 406 (430)
T ss_pred EECC
Confidence 7764
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.2e-10 Score=119.37 Aligned_cols=221 Identities=15% Similarity=0.111 Sum_probs=135.0
Q ss_pred eEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC-C--cEEEEECCCCCCCCCceEEeccCCCCEEEEEEec
Q 009380 216 CVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL-G--NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ 292 (536)
Q Consensus 216 ~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d-g--~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 292 (536)
.|.++|.+......+..+...+.+..|+| ||+.|+..+.+ + .|.+||+.++. ...+..+ .+......|+|
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSP--DG~~La~~s~~~g~~~L~~~dl~tg~--~~~lt~~---~g~~~~~~wSP 271 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSP--DGRKLAYVSFENRKAEIFVQDIYTQV--REKVTSF---PGINGAPRFSP 271 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECC--CCCEEEEEEecCCCcEEEEEECCCCC--eEEecCC---CCCcCCeeECC
Confidence 55556654433334445577899999999 99988876543 3 58888887632 1122222 23345789999
Q ss_pred CCCCEE-EEEECCCe--EEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC--eEEEEECCCCccceeEeccC
Q 009380 293 YCLSKI-FTSCYDGL--IRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG--GLNIWDVRSRKSATEWLLHE 367 (536)
Q Consensus 293 ~~~~~l-~s~s~dg~--I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~ 367 (536)
++ +.| ++.+.+|. |.++|+.++....+..+.......+|+|++..++++...+| .|+++|+.+++.. .+....
T Consensus 272 DG-~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g 349 (448)
T PRK04792 272 DG-KKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEG 349 (448)
T ss_pred CC-CEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCC
Confidence 99 655 45666775 78889988887776666666778899999844444443344 5777788776643 232222
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCc--EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-Cc--EEEEe
Q 009380 368 ARINTIDFNPRNPNIMATSSTDGT--ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-DT--IGIWS 442 (536)
Q Consensus 368 ~~i~~i~~~p~~~~~l~s~s~dg~--i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-g~--I~iwd 442 (536)
......+|+|+|..++++...++. |.++|+.++. ...+... .......|+|+|+.|+..+.+ +. +.+++
T Consensus 350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~-----~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~ 423 (448)
T PRK04792 350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA-----MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVS 423 (448)
T ss_pred CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC-----eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 334457899998544444444454 5556776643 1111111 122345899999988776643 33 66777
Q ss_pred CCCCCcceEE
Q 009380 443 GVNFENTSMI 452 (536)
Q Consensus 443 ~~~~~~~~~~ 452 (536)
. ++.....+
T Consensus 424 ~-~G~~~~~l 432 (448)
T PRK04792 424 I-DGRFKARL 432 (448)
T ss_pred C-CCCceEEC
Confidence 6 34444433
No 252
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=3.5e-10 Score=110.19 Aligned_cols=310 Identities=12% Similarity=0.104 Sum_probs=196.5
Q ss_pred eeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeC----------
Q 009380 187 KTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSK---------- 256 (536)
Q Consensus 187 ~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~---------- 256 (536)
..+.+||.|.+|++.-.. .|.||--. .-..+.+...-.|.-+.||| ..+||+|=+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~-----------GI~lWGG~-~f~r~~RF~Hp~Vq~idfSP--~EkYLVT~s~~p~~~~~~d~ 279 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQ-----------GIALWGGE-SFDRIQRFYHPGVQFIDFSP--NEKYLVTYSPEPIIVEEDDN 279 (698)
T ss_pred eeEEecCCceEEEEEecc-----------ceeeecCc-cHHHHHhccCCCceeeecCC--ccceEEEecCCccccCcccC
Confidence 467899999999987333 45555421 11222333344688899999 8899998542
Q ss_pred -CCcEEEEECCCCCCCCCceEEecc--CCCCE-EEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-CCCceeEEE
Q 009380 257 -LGNITFWNLDSQQDEDNGIYLFRT--HLGPI-SGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-SEYAVFSLS 331 (536)
Q Consensus 257 -dg~v~iwd~~~~~~~~~~~~~~~~--h~~~V-~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-~~~~i~~l~ 331 (536)
...+.|||+.+ +.....|.. ....+ .-+.||.|+ .+++.-.. .+|.||+..+-.+..... .-..|....
T Consensus 280 e~~~l~IWDI~t----G~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~Fs 353 (698)
T KOG2314|consen 280 EGQQLIIWDIAT----GLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFS 353 (698)
T ss_pred CCceEEEEEccc----cchhcceeccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCceeeecccccCCccccCcc
Confidence 25799999998 555555544 22223 345799987 77777665 568999887632221111 236788899
Q ss_pred ecCCCCCEEEEEEC-----CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe----------CCCcEEEEe
Q 009380 332 QQPNNVNTLYFGEG-----QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS----------TDGTACIWD 396 (536)
Q Consensus 332 ~~~~~~~~l~~g~~-----dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s----------~dg~i~iwd 396 (536)
|+|.+ ++|+--+. -..+.+..+.+++.+++-..|.-.=..+.|...| .+|+.-- .=..+-|+.
T Consensus 354 wsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfr 431 (698)
T KOG2314|consen 354 WSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFR 431 (698)
T ss_pred cCCCc-ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEE
Confidence 99997 77765432 1457777877777776665554444456676655 4554321 112466777
Q ss_pred CCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC---CCcEEEEeCCC-CCcceEEeccCCCCceeeeeEEEEcCC
Q 009380 397 LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVN-FENTSMIHHNNQTGRWISSFRAIWGWD 472 (536)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~---dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~ 472 (536)
++.. ..++........|...+|-|.|+.+++.+. ..++.+|-+.+ ......+..... ..+..+.|+|.
T Consensus 432 ireK----dIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPk 503 (698)
T KOG2314|consen 432 IREK----DIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPK 503 (698)
T ss_pred eecc----CCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCC
Confidence 7763 356666678889999999999998887764 35688888763 222111111010 12233779999
Q ss_pred CCEEEEE---cCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCe
Q 009380 473 DSCVFIG---NMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQ 529 (536)
Q Consensus 473 g~~l~~g---s~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~ 529 (536)
|++++++ |..|.+.++|..-......-...|... ..+.|.|+ |+++++++..++
T Consensus 504 G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~a--t~veWDPt-GRYvvT~ss~wr 560 (698)
T KOG2314|consen 504 GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAA--TEVEWDPT-GRYVVTSSSSWR 560 (698)
T ss_pred CcEEEEEEecccccceEEEecchhhhhhccCcccccc--ccceECCC-CCEEEEeeehhh
Confidence 9998876 557889999988533322222223322 36789995 699999885443
No 253
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=3e-10 Score=110.99 Aligned_cols=236 Identities=16% Similarity=0.163 Sum_probs=161.7
Q ss_pred eeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEE-----EeCCCcEE
Q 009380 187 KTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVA-----GSKLGNIT 261 (536)
Q Consensus 187 ~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~t-----g~~dg~v~ 261 (536)
++.+|+.|+.+.|.. ..+.+.+|+.........+.|...|+.+.++|...-..||+ ++.-+.|+
T Consensus 129 W~~qfs~dEsl~arl-----------v~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vr 197 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-----------VSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVR 197 (566)
T ss_pred cccccccchhhhhhh-----------hcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEE
Confidence 689999999988866 33467778775544555678899999999999433455554 45567899
Q ss_pred EEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC--C---------CeEEEEECCCCeEEEeecCCCceeEE
Q 009380 262 FWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY--D---------GLIRLMDAEKEVFDLVYSSEYAVFSL 330 (536)
Q Consensus 262 iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~--d---------g~I~vwd~~~~~~~~~~~~~~~i~~l 330 (536)
||....... ...+..-.-....=..+.|++-|..+|+.++. | .+++++++++..........++|.++
T Consensus 198 i~~~~~~~~-~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv 276 (566)
T KOG2315|consen 198 IYKYPEEGQ-HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDV 276 (566)
T ss_pred Eeccccccc-cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEE
Confidence 999873211 11111111112223357888877556655543 2 46888888866666666678999999
Q ss_pred EecCCCCCEEEE-EECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC---CCcEEEEeCCCCCCCCCC
Q 009380 331 SQQPNNVNTLYF-GEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST---DGTACIWDLRSMATDKPE 406 (536)
Q Consensus 331 ~~~~~~~~~l~~-g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~---dg~i~iwdl~~~~~~~~~ 406 (536)
.|++++..+.++ |-.-..+.|||++ +.++..+ ..++-+++-|+|.| ++++.++. -|.|-|||+.+.+ .
T Consensus 277 ~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K----~ 348 (566)
T KOG2315|consen 277 TWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRK----L 348 (566)
T ss_pred EECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchh----h
Confidence 999998444333 3345789999986 4444444 46777899999988 67766664 3889999998843 2
Q ss_pred cceeecccCceeEEEEccCCCeEEEEeC------CCcEEEEeCC
Q 009380 407 PMKVLSHKRAVHSAYFSPSGSSLATTSF------DDTIGIWSGV 444 (536)
Q Consensus 407 ~~~~~~~~~~v~~l~~sp~g~~l~t~s~------dg~I~iwd~~ 444 (536)
+.... ....+-+.|+|||.+|+|++. |+.++||+..
T Consensus 349 i~~~~--a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 349 IAKFK--AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ccccc--cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 22222 223456799999999999875 6789999974
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=5.7e-10 Score=113.51 Aligned_cols=225 Identities=12% Similarity=0.105 Sum_probs=136.7
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCC--EEEEEECC--CeEEEEECCCCeEEEeecCCCceeEEEec
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLS--KIFTSCYD--GLIRLMDAEKEVFDLVYSSEYAVFSLSQQ 333 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~--~l~s~s~d--g~I~vwd~~~~~~~~~~~~~~~i~~l~~~ 333 (536)
..|.+.|.+. .....+......+..-.|+|||.. ++++...+ ..|.+.++.++....+....+......|+
T Consensus 165 ~~l~~~d~dG-----~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wS 239 (428)
T PRK01029 165 GELWSVDYDG-----QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFS 239 (428)
T ss_pred ceEEEEcCCC-----CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEEC
Confidence 3566667663 223334445556677899999833 22344434 35888899888777666666667788999
Q ss_pred CCCCCEEEEEECCC----eEEEEECCCCc--cceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEe--CCCCCCCC
Q 009380 334 PNNVNTLYFGEGQG----GLNIWDVRSRK--SATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWD--LRSMATDK 404 (536)
Q Consensus 334 ~~~~~~l~~g~~dg----~i~i~d~~~~~--~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwd--l~~~~~~~ 404 (536)
|+|..++++...+| .+.+|++..+. ....+. .+.......+|+|+|..++.+...+|...||. +....
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--- 316 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--- 316 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc---
Confidence 99944444443333 34446776531 222333 22334567899999854555555567655554 43211
Q ss_pred CCcceeecccCceeEEEEccCCCeEEEEeCC---CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC
Q 009380 405 PEPMKVLSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM 481 (536)
Q Consensus 405 ~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~ 481 (536)
.....+..+...+....|+|||+.|+..+.+ ..|.+||+.+++....... . . . ...+.|+|||++|+....
T Consensus 317 ~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~--~-~--~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-P--E-N--KESPSWAIDSLHLVYSAG 390 (428)
T ss_pred cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-C--C-C--ccceEECCCCCEEEEEEC
Confidence 1222333444567789999999988877643 3699999987765432211 1 1 1 122779999998775432
Q ss_pred ---CCcEEEEcCCccccc
Q 009380 482 ---TRTVEVISPAQRRSV 496 (536)
Q Consensus 482 ---dg~I~v~d~~~~~~~ 496 (536)
...|.++++.+++..
T Consensus 391 ~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 391 NSNESELYLISLITKKTR 408 (428)
T ss_pred CCCCceEEEEECCCCCEE
Confidence 356888898877543
No 255
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=4.9e-12 Score=122.56 Aligned_cols=284 Identities=15% Similarity=0.184 Sum_probs=184.3
Q ss_pred ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC---CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 230 ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE---DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 230 ~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
..+|...|..++--. +.+-++++++|.+|++|.+...... ..+..+++.|+.+|.++.|..+. .+++++ ||.
T Consensus 731 f~GH~~~iRai~Aid--NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~Sc--D~g 805 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAID--NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIASC--DGG 805 (1034)
T ss_pred ccCcHHHhHHHHhcc--cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceeeec--cCc
Confidence 367888888887776 6678999999999999999864332 24778999999999999999886 677665 889
Q ss_pred EEEEECCCCeEEEee---cCCCceeEEEecCC-CCCEEEEE-ECCCeEEEEECCCCccceeEe-----ccCCCeEEEEEe
Q 009380 307 IRLMDAEKEVFDLVY---SSEYAVFSLSQQPN-NVNTLYFG-EGQGGLNIWDVRSRKSATEWL-----LHEARINTIDFN 376 (536)
Q Consensus 307 I~vwd~~~~~~~~~~---~~~~~i~~l~~~~~-~~~~l~~g-~~dg~i~i~d~~~~~~~~~~~-----~h~~~i~~i~~~ 376 (536)
|.+||.--+...... ...+.+..+...++ +..++++| +...+|+++|.+..+....++ +....+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 999997665443211 12233333333333 22345544 678899999999988877776 334568899999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEE-EeCCCCCcceEEecc
Q 009380 377 PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI-WSGVNFENTSMIHHN 455 (536)
Q Consensus 377 p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~i-wd~~~~~~~~~~~~~ 455 (536)
+.| +.++++-.+|+|.+.|.|+++ .+............++ .|..+.++....|.++.+ |-..++.........
T Consensus 886 ~~G-N~lAa~LSnGci~~LDaR~G~----vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 886 DKG-NKLAAALSNGCIAILDARNGK----VINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred cCc-chhhHHhcCCcEEEEecCCCc----eeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC
Confidence 977 789999999999999999975 1222222222222222 245566777778888888 876554333333222
Q ss_pred CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc----ccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEE
Q 009380 456 NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR----RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY 531 (536)
Q Consensus 456 ~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~----~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~ 531 (536)
....+.+. .-|..|++....+.+.||.-... ..+.++....-..+.+.+..-|-+ .-+..|+..|.|.
T Consensus 960 pepahflq-------svgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN-~afLaGne~G~Ia 1031 (1034)
T KOG4190|consen 960 PEPAHFLQ-------SVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLN-CAFLAGNEHGAIA 1031 (1034)
T ss_pred Ccchhhhh-------ccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecccc-chhhccCCCCcee
Confidence 22111111 13456677666667777743211 122334443334445677777866 5667788888887
Q ss_pred E
Q 009380 532 V 532 (536)
Q Consensus 532 i 532 (536)
+
T Consensus 1032 L 1032 (1034)
T KOG4190|consen 1032 L 1032 (1034)
T ss_pred e
Confidence 5
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.6e-10 Score=113.74 Aligned_cols=187 Identities=11% Similarity=0.127 Sum_probs=148.3
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEecc---CCCCEEEEEEe------c-------------CCCCEEEEEECC
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT---HLGPISGIVTQ------Q-------------YCLSKIFTSCYD 304 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~---h~~~V~~l~~~------~-------------~~~~~l~s~s~d 304 (536)
...++|..+.||.+++|+...+ .....|.+ -++..++..|. | .+...++-|...
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~----~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKN----QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred hhheEeecCCCCeEEEEEccCc----eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 5679999999999999999873 33333322 23445555552 1 112567888889
Q ss_pred CeEEEEECCCCeEEEee---cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCC
Q 009380 305 GLIRLMDAEKEVFDLVY---SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPN 381 (536)
Q Consensus 305 g~I~vwd~~~~~~~~~~---~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~ 381 (536)
|.|.+|++..+++...+ .|.+.|.++.++.+- .+|++++.|+.+..|+......++.+......+.+++.+||+ .
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~-~ 157 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG-K 157 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC-C
Confidence 99999999999876655 478899999998876 799999999999999999999999999999999999999997 6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC-----CCeEEEEe-CCCcEEEEeCCC
Q 009380 382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS-----GSSLATTS-FDDTIGIWSGVN 445 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~-----g~~l~t~s-~dg~I~iwd~~~ 445 (536)
++++++ +.|++||+.+.+ .+..+.+|.++|+++.|--+ |.+++++. .+.-|.+|-+..
T Consensus 158 ~l~~as--~~ik~~~~~~ke----vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKE----VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEecc--ceEEEEEccCce----EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 888887 689999999954 67777799999999999876 67776654 445577776543
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=7e-11 Score=123.09 Aligned_cols=197 Identities=13% Similarity=0.107 Sum_probs=153.8
Q ss_pred ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCC-----EEEEEEecCCCCEEEEEECCCe
Q 009380 232 IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGP-----ISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 232 ~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~-----V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
...+.|....+.- +...++.++.++.+.+||... ........ +... ..-+.++++. -++++|+.-+.
T Consensus 85 ~~s~wi~g~~l~~--e~k~i~l~~~~ns~~i~d~~~----~~~~~~i~-~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~ 156 (967)
T KOG0974|consen 85 RFSDWIFGAKLFE--ENKKIALVTSRNSLLIRDSKN----SSVLSKIQ-SDERCTLYSSLIIGDSAEE-LYIASGSVFGE 156 (967)
T ss_pred hccccccccchhh--hcceEEEEEcCceEEEEeccc----CceehhcC-CCceEEEEeEEEEeccCcE-EEEEecccccc
Confidence 3466677666655 778899999999999999985 22222222 2221 1122344444 68899999999
Q ss_pred EEEEECCC-CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccce-eEeccCCCeEEEEEecCCCCEEE
Q 009380 307 IRLMDAEK-EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSAT-EWLLHEARINTIDFNPRNPNIMA 384 (536)
Q Consensus 307 I~vwd~~~-~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~-~~~~h~~~i~~i~~~p~~~~~l~ 384 (536)
|.+|+... .....+.+|++.|.++.|+.++ .++++.+.|.++++|++.+.+... +..+|...|..++|+|. .++
T Consensus 157 iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~ 232 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RII 232 (967)
T ss_pred EEEEeccccCCcceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeE
Confidence 99999873 3344578999999999999998 899999999999999999988765 66689999999999983 899
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCcceeecc-cCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380 385 TSSTDGTACIWDLRSMATDKPEPMKVLSH-KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 385 s~s~dg~i~iwdl~~~~~~~~~~~~~~~~-~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~ 445 (536)
|++.|-+.++|+.... ....+.+| ...|+.++..++...++|++.|+.+++||+..
T Consensus 233 t~gedctcrvW~~~~~-----~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 233 TVGEDCTCRVWGVNGT-----QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EeccceEEEEEecccc-----eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999999999976652 22234455 46799999999999999999999999999864
No 258
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.31 E-value=1.8e-11 Score=122.62 Aligned_cols=293 Identities=16% Similarity=0.185 Sum_probs=194.8
Q ss_pred cceeeeecCCCCcccccccccccccccccccceEEecccc--cC-ccccccccCCceEEEEEEecCCccEEEEEeCCCcE
Q 009380 184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLT--LK-PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNI 260 (536)
Q Consensus 184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~--~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v 260 (536)
.++..+.++|.|+.++.. ..- .+.+-|++ .. +.-+....+-.|-.+.|+|.....+-++......-
T Consensus 25 ~~~~a~si~p~grdi~lA----------sr~-gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qka 93 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLA----------SRQ-GLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKA 93 (1081)
T ss_pred Ccccceeeccccchhhhh----------hhc-CeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchh
Confidence 466777888888877733 111 23333332 22 33333444667889999986666777777777788
Q ss_pred EEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE--EeecCCCceeEEEecCCCCC
Q 009380 261 TFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD--LVYSSEYAVFSLSQQPNNVN 338 (536)
Q Consensus 261 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~--~~~~~~~~i~~l~~~~~~~~ 338 (536)
.+|++..... ...-..+.+|+..|+.+.|+|+.+..+++++.|-.+..||+++...- ....-......+.|+..+++
T Consensus 94 iiwnlA~ss~-~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~ 172 (1081)
T KOG0309|consen 94 IIWNLAKSSS-NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN 172 (1081)
T ss_pred hhhhhhcCCc-cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc
Confidence 8999975432 45556778999999999999999999999999999999999875432 22234566788999988877
Q ss_pred EEEEEECCCeEEEEECCCCc-cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCce
Q 009380 339 TLYFGEGQGGLNIWDVRSRK-SATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAV 417 (536)
Q Consensus 339 ~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v 417 (536)
.+++.. ...|.+||++.|. ++..+++|...|+.+.|+..-...+.+++.||+|+.||..+.. ...........+|
T Consensus 173 vlassh-g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt---~e~~~~vtt~~pi 248 (1081)
T KOG0309|consen 173 VLASSH-GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST---TESKRTVTTNFPI 248 (1081)
T ss_pred hhhhcc-CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc---cccceeccccCcc
Confidence 666544 4589999999764 5788889999999999987554578999999999999988743 2333344566788
Q ss_pred eEEEEccCCCeEEE--EeCCCcEEEEeCCCC----------CcceEEe-ccCCCCceeee--eEEEEcCC--CCEEEEEc
Q 009380 418 HSAYFSPSGSSLAT--TSFDDTIGIWSGVNF----------ENTSMIH-HNNQTGRWISS--FRAIWGWD--DSCVFIGN 480 (536)
Q Consensus 418 ~~l~~sp~g~~l~t--~s~dg~I~iwd~~~~----------~~~~~~~-~~~~~~~~~~~--~~~~~s~~--g~~l~~gs 480 (536)
+...|-|-|.-.++ .-.+..+.+++.++. .+++.+. |.......+.. -.+.+..+ .-.|++-+
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWS 328 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWS 328 (1081)
T ss_pred eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEee
Confidence 88888885542222 222334444443322 3344442 22211100000 00111222 22489999
Q ss_pred CCCcEEEEcCCc
Q 009380 481 MTRTVEVISPAQ 492 (536)
Q Consensus 481 ~dg~I~v~d~~~ 492 (536)
.|..+++|.+.+
T Consensus 329 kD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 329 KDQTLRLWPIDS 340 (1081)
T ss_pred cCCceEeeeccH
Confidence 999999998865
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=1.9e-11 Score=132.95 Aligned_cols=223 Identities=12% Similarity=0.213 Sum_probs=172.3
Q ss_pred CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec--CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc
Q 009380 281 HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS--SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK 358 (536)
Q Consensus 281 h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~ 358 (536)
|-..|.++.-+|.. .+.+||+.||.|++|....+.....+. ....|+.+.|+.+| +.+.++..||.+.+|... .+
T Consensus 2207 ~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC-CceeeeccCCceeecccC-Cc
Confidence 34567788888887 899999999999999988776554442 34789999999998 888999999999999987 77
Q ss_pred cceeEeccCCCeEEEEEecCCCCEEEEEe---CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC
Q 009380 359 SATEWLLHEARINTIDFNPRNPNIMATSS---TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD 435 (536)
Q Consensus 359 ~~~~~~~h~~~i~~i~~~p~~~~~l~s~s---~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d 435 (536)
+...++.|......+.|.. ..+++++ .++.+.+||.-... ....+. ..|...++++++-|..++|++|+.+
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~--~~s~v~-~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPP--MNSLVH-TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCc--ccceee-eecCCCceEEEEcCcceEEEecCCc
Confidence 7888889999999999985 4677765 46899999976532 112222 6899999999999999999999999
Q ss_pred CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeee-----eee
Q 009380 436 DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAI-----PCR 510 (536)
Q Consensus 436 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~-----~~~ 510 (536)
|.|++||++..+..+.+.. +. ...+|++|+..|.|+||++.....+.++...|...- ...
T Consensus 2358 G~v~l~D~rqrql~h~~~~--------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q 2422 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA--------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQ 2422 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh--------------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCce
Confidence 9999999987666655522 23 456899999999999999999988888887552211 011
Q ss_pred EeecCCCCCEEEEEccCCe
Q 009380 511 FHAHPHQVGTLAGATGGGQ 529 (536)
Q Consensus 511 ~~~~p~~~~~lasgs~Dg~ 529 (536)
+...+ .+.|.+|+.||.
T Consensus 2423 ~~v~~--~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2423 INVGQ--CNRIFSCGADGT 2439 (2439)
T ss_pred eeecc--CceEEEecCCCC
Confidence 11222 356777777763
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=8.8e-10 Score=112.15 Aligned_cols=224 Identities=11% Similarity=0.046 Sum_probs=131.5
Q ss_pred ceEEecccccCccccccccCCceEEEEEEecCCccE---EEEEeCCC--cEEEEECCCCCCCCCceEEeccCCCCEEEEE
Q 009380 215 SCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRM---VVAGSKLG--NITFWNLDSQQDEDNGIYLFRTHLGPISGIV 289 (536)
Q Consensus 215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~---l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 289 (536)
+.|.+.|.+......+......+.+-+|+| ||+. +++...+| .|.+.++..+. ...+..+ .+......
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSP--DG~~~~~~y~S~~~g~~~I~~~~l~~g~--~~~lt~~---~g~~~~p~ 237 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMH--IGSGFPYLYVSYKLGVPKIFLGSLENPA--GKKILAL---QGNQLMPT 237 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEcc--CCCceEEEEEEccCCCceEEEEECCCCC--ceEeecC---CCCccceE
Confidence 345555543332222333455678889999 8864 23444444 57777777532 2333333 34455689
Q ss_pred EecCCCCEEEEEEC-CC----eEEEEECCC---CeEEEeecCC-CceeEEEecCCCCCEEEEEECCCeEEEE--ECCC-C
Q 009380 290 TQQYCLSKIFTSCY-DG----LIRLMDAEK---EVFDLVYSSE-YAVFSLSQQPNNVNTLYFGEGQGGLNIW--DVRS-R 357 (536)
Q Consensus 290 ~~~~~~~~l~s~s~-dg----~I~vwd~~~---~~~~~~~~~~-~~i~~l~~~~~~~~~l~~g~~dg~i~i~--d~~~-~ 357 (536)
|+||| +.|+..+. +| .+..|++.. +....+.... ......+|+|+|..++++...+|...+| ++.. +
T Consensus 238 wSPDG-~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 238 FSPRK-KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred ECCCC-CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 99999 66665542 23 344577764 2333444332 3456789999994344444456654444 5432 2
Q ss_pred ccceeEeccCCCeEEEEEecCCCCEEEEEeCC--CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC-
Q 009380 358 KSATEWLLHEARINTIDFNPRNPNIMATSSTD--GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF- 434 (536)
Q Consensus 358 ~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d--g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~- 434 (536)
.....+..+...+....|+|+|..+++++..+ ..|.+||+.+++ ...+......+....|+|||+.|+....
T Consensus 317 ~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~-----~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR-----DYQLTTSPENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC-----eEEccCCCCCccceEECCCCCEEEEEECC
Confidence 33444544556678899999985444444333 368999998763 2222223345678999999998875543
Q ss_pred --CCcEEEEeCCCCCcceE
Q 009380 435 --DDTIGIWSGVNFENTSM 451 (536)
Q Consensus 435 --dg~I~iwd~~~~~~~~~ 451 (536)
...|.+||+.+++....
T Consensus 392 ~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 392 SNESELYLISLITKKTRKI 410 (428)
T ss_pred CCCceEEEEECCCCCEEEe
Confidence 34688889877654433
No 261
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=9.7e-09 Score=95.96 Aligned_cols=276 Identities=13% Similarity=0.118 Sum_probs=179.6
Q ss_pred cccccceEEecccccCcccc----ccccCCceEEEEEEecCCccEEEEEeC---CCcEEEEECCCCCCCCCceEEeccCC
Q 009380 210 KIEVGSCVDIGSLTLKPENI----ARIMPGRITQMKFLPCSDVRMVVAGSK---LGNITFWNLDSQQDEDNGIYLFRTHL 282 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~~~~~~----~~~~~~~I~~v~~~p~~~~~~l~tg~~---dg~v~iwd~~~~~~~~~~~~~~~~h~ 282 (536)
+.+.+..|..|++......+ .-...+..+-|+|+| +++.|.++-. +|.|..|.++........+.....-.
T Consensus 11 T~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~--~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g 88 (346)
T COG2706 11 TKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP--DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG 88 (346)
T ss_pred cccCCCceEEEEEeCcccccchhhhccccCCCceEEECC--CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC
Confidence 34446689999986332221 223478899999999 8888888755 47888888875311111222222223
Q ss_pred CCEEEEEEecCCCCEEEEEEC-CCeEEEEECCC-CeE---EEeecCCCc----------eeEEEecCCCCCEEEEEEC-C
Q 009380 283 GPISGIVTQQYCLSKIFTSCY-DGLIRLMDAEK-EVF---DLVYSSEYA----------VFSLSQQPNNVNTLYFGEG-Q 346 (536)
Q Consensus 283 ~~V~~l~~~~~~~~~l~s~s~-dg~I~vwd~~~-~~~---~~~~~~~~~----------i~~l~~~~~~~~~l~~g~~-d 346 (536)
.+-+.+++++++ .+|+++.+ .|.|.++-++. |.+ .....|.+. +-+..+.|++ ++|++... -
T Consensus 89 ~~p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~ 166 (346)
T COG2706 89 SPPCYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGT 166 (346)
T ss_pred CCCeEEEECCCC-CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCC
Confidence 344889999999 89998877 58899999865 433 233344444 7888999998 67777653 2
Q ss_pred CeEEEEECCCCccceeEe---ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc--cee----ecccCce
Q 009380 347 GGLNIWDVRSRKSATEWL---LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP--MKV----LSHKRAV 417 (536)
Q Consensus 347 g~i~i~d~~~~~~~~~~~---~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~--~~~----~~~~~~v 417 (536)
-.|.+|++..++....-. .....-+.|.|||++....+.+-.+++|-+|...........+ +.. +.-..+.
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence 389999999776522111 3445678899999886555556678999999988742111111 111 1235577
Q ss_pred eEEEEccCCCeEEEEeC-CCcEEEEeCCCCC-cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-CcEEEEcCC
Q 009380 418 HSAYFSPSGSSLATTSF-DDTIGIWSGVNFE-NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-RTVEVISPA 491 (536)
Q Consensus 418 ~~l~~sp~g~~l~t~s~-dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-g~I~v~d~~ 491 (536)
..|..+|+|++|.++.. .+.|.+|.+.... .+..+......+.+-.. ..+++.|++|++++.+ ..|.+|.+.
T Consensus 247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~--F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRD--FNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc--ceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 88999999999988763 4478888876543 23333333333333333 4578999999998876 458888654
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=9e-09 Score=96.19 Aligned_cols=272 Identities=13% Similarity=0.219 Sum_probs=175.6
Q ss_pred CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC---CeEEEEECCC--CeEEEeec---CCCcee
Q 009380 257 LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---GLIRLMDAEK--EVFDLVYS---SEYAVF 328 (536)
Q Consensus 257 dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---g~I~vwd~~~--~~~~~~~~---~~~~i~ 328 (536)
+..|++|++++.... ........+.+..+-|+|+|+. +.|+++-.+ |.|..|.++. |.+..+-. ...+.+
T Consensus 15 s~gI~v~~ld~~~g~-l~~~~~v~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGE-LSLLQLVAELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccc-cchhhhccccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 467999999864321 2222334566788999999998 888888654 7777777764 65544332 234458
Q ss_pred EEEecCCCCCEEEEEE-CCCeEEEEECCC-Cccc--eeEeccCCC----------eEEEEEecCCCCEEEEEeC-CCcEE
Q 009380 329 SLSQQPNNVNTLYFGE-GQGGLNIWDVRS-RKSA--TEWLLHEAR----------INTIDFNPRNPNIMATSST-DGTAC 393 (536)
Q Consensus 329 ~l~~~~~~~~~l~~g~-~dg~i~i~d~~~-~~~~--~~~~~h~~~----------i~~i~~~p~~~~~l~s~s~-dg~i~ 393 (536)
.+++++++ .+++++. ..|.|.++-++. |... .....|.+. +....+.|++ ++|++.+. --.|.
T Consensus 93 yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~ 170 (346)
T COG2706 93 YVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIF 170 (346)
T ss_pred EEEECCCC-CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEE
Confidence 89999998 6777765 458999999976 4332 122235555 8889999988 67777653 24699
Q ss_pred EEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCC-CcceEE------eccCCCCceeeee
Q 009380 394 IWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNF-ENTSMI------HHNNQTGRWISSF 465 (536)
Q Consensus 394 iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~-~~~~~~------~~~~~~~~~~~~~ 465 (536)
+|++..+.........+ .-...-..|.|+|++++..+.+ .+++|.+|..... .....+ +..-....+...
T Consensus 171 ~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa- 248 (346)
T COG2706 171 LYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA- 248 (346)
T ss_pred EEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeE-
Confidence 99999765322222222 5566788999999999888776 5899999998763 222222 111122223333
Q ss_pred EEEEcCCCCEEEEEcCC-CcEEEEcCCccc-cceeccC-CceeeeeeeEeecCCCCCEEEEEccC-CeEEEEecC
Q 009380 466 RAIWGWDDSCVFIGNMT-RTVEVISPAQRR-SVATLQS-PYISAIPCRFHAHPHQVGTLAGATGG-GQVYVWTSD 536 (536)
Q Consensus 466 ~~~~s~~g~~l~~gs~d-g~I~v~d~~~~~-~~~~l~~-~~~~~~~~~~~~~p~~~~~lasgs~D-g~v~iW~~d 536 (536)
+..++||++|++++.- ..|-+|.+.... .+..+.. ......+-.|.+.|. +++|++++.+ ..|.+|.+|
T Consensus 249 -Ihis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 249 -IHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS-GRFLIAANQKSDNITVFERD 321 (346)
T ss_pred -EEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEc
Confidence 5679999999998653 467888765431 2222221 122233457888884 5777777644 468888764
No 263
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.29 E-value=4.9e-09 Score=105.82 Aligned_cols=256 Identities=14% Similarity=0.099 Sum_probs=159.8
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCc
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYA 326 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~ 326 (536)
++..+++++.+|.|..+|..+ ++.+...... +.+.+.-.. .+ ..++.++.+|.|..||.++++....+....+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~t----G~~~W~~~~~-~~~~~~p~v-~~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~ 176 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAED----GKELWRAKLS-SEVLSPPLV-AN-GLVVVRTNDGRLTALDAATGERLWTYSRVTP 176 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCC----CcEeeeeccC-ceeecCCEE-EC-CEEEEECCCCeEEEEEcCCCceeeEEccCCC
Confidence 556788888999999999987 4444443322 222221111 23 5778888899999999999887655543332
Q ss_pred eeE------EEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCC----C------e-EEEEEecCCCCEEEEEeCC
Q 009380 327 VFS------LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA----R------I-NTIDFNPRNPNIMATSSTD 389 (536)
Q Consensus 327 i~~------l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~----~------i-~~i~~~p~~~~~l~s~s~d 389 (536)
... .... + ..++++..+|.+..+|.++|+.+........ . + .+..+. + ..+++++.+
T Consensus 177 ~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~-~~vy~~~~~ 250 (377)
T TIGR03300 177 ALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--G-GQVYAVSYQ 250 (377)
T ss_pred ceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--C-CEEEEEEcC
Confidence 211 1111 2 3678888899999999999987654321100 0 1 111122 3 467777889
Q ss_pred CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEE
Q 009380 390 GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIW 469 (536)
Q Consensus 390 g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (536)
|.++.||..+++ ..... ... ...... ..+..+++++.||.|..+|..+++.+...... ....... +.
T Consensus 251 g~l~a~d~~tG~----~~W~~-~~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~--~~~~~ss--p~- 317 (377)
T TIGR03300 251 GRVAALDLRSGR----VLWKR-DAS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDEL--KYRQLTA--PA- 317 (377)
T ss_pred CEEEEEECCCCc----EEEee-ccC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccc--cCCcccc--CE-
Confidence 999999998864 11111 111 111122 24667888889999999999888766544211 1111111 11
Q ss_pred cCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380 470 GWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533 (536)
Q Consensus 470 s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW 533 (536)
..+..|++++.+|.|+++|..+++.+.++..+..... ..-... + +.|+.++.||.|+.|
T Consensus 318 -i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~-~sp~~~--~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 318 -VVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIA-SPPVVV--G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred -EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccc-cCCEEE--C-CEEEEEeCCceEEEe
Confidence 1356899999999999999999999988875432221 111221 3 578899999999876
No 264
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.27 E-value=1.5e-08 Score=98.45 Aligned_cols=255 Identities=11% Similarity=0.111 Sum_probs=155.4
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC----------CCeEEEEECCCCeEEEeecCC---
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY----------DGLIRLMDAEKEVFDLVYSSE--- 324 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~----------dg~I~vwd~~~~~~~~~~~~~--- 324 (536)
++|.+.|..+ .+.+..+..-..+- .+ ++|++ +.|+.+.. +..|.+||+.+.+........
T Consensus 27 ~~v~ViD~~~----~~v~g~i~~G~~P~-~~-~spDg-~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEA----GRVLGMTDGGFLPN-PV-VASDG-SFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCC----CEEEEEEEccCCCc-ee-ECCCC-CEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 7899999987 56666665443333 24 99999 66665554 789999999998776544432
Q ss_pred -----CceeEEEecCCCCCEEEEEE-C-CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 009380 325 -----YAVFSLSQQPNNVNTLYFGE-G-QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDL 397 (536)
Q Consensus 325 -----~~i~~l~~~~~~~~~l~~g~-~-dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl 397 (536)
.....++++|+| ++|++.. . +..|.++|+.+++.+.++.... ...-+..++.. ++ +-+.||......+
T Consensus 100 ~~~~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~--~~~~Dg~~~~v~~ 174 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDT-FF--MHCRDGSLAKVGY 174 (352)
T ss_pred hhhccCccceEEECCCC-CEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCc-cE--EEeecCceEEEEe
Confidence 233478999999 7777665 3 6899999999999888876422 22222222211 11 2223444444333
Q ss_pred CCCCCCCCCcceeecc------cCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCC-----cceEEeccC-----CCCc
Q 009380 398 RSMATDKPEPMKVLSH------KRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFE-----NTSMIHHNN-----QTGR 460 (536)
Q Consensus 398 ~~~~~~~~~~~~~~~~------~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~-----~~~~~~~~~-----~~~~ 460 (536)
............++.. ..+ .|.+ +|+++.+... |+|.+.|+.... ....+.... ..+.
T Consensus 175 d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g 249 (352)
T TIGR02658 175 GTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG 249 (352)
T ss_pred cCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCc
Confidence 3211000000011100 112 4566 8887777666 999999964432 222221110 1111
Q ss_pred eeeeeEEEEcCCCCEEEEEc----------CCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCC-EEEEEc-cCC
Q 009380 461 WISSFRAIWGWDDSCVFIGN----------MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGAT-GGG 528 (536)
Q Consensus 461 ~~~~~~~~~s~~g~~l~~gs----------~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~-~lasgs-~Dg 528 (536)
+ .. ++++++++.+++.. ..+.|.++|..+++.+..+...+. +..+.++| |+. +|++.+ .++
T Consensus 250 ~-q~--ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~---~~~iavS~-Dgkp~lyvtn~~s~ 322 (352)
T TIGR02658 250 W-QQ--VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHE---IDSINVSQ-DAKPLLYALSTGDK 322 (352)
T ss_pred c-ee--EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCc---eeeEEECC-CCCeEEEEeCCCCC
Confidence 1 11 66899999888743 124799999999999998875432 24678888 456 777666 688
Q ss_pred eEEEEecC
Q 009380 529 QVYVWTSD 536 (536)
Q Consensus 529 ~v~iW~~d 536 (536)
.|.|.|++
T Consensus 323 ~VsViD~~ 330 (352)
T TIGR02658 323 TLYIFDAE 330 (352)
T ss_pred cEEEEECc
Confidence 89999863
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.27 E-value=5e-09 Score=117.26 Aligned_cols=250 Identities=11% Similarity=0.104 Sum_probs=163.2
Q ss_pred EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEecc--------------CCCCEEEEEEecCCCCEEEEEE-
Q 009380 238 TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT--------------HLGPISGIVTQQYCLSKIFTSC- 302 (536)
Q Consensus 238 ~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~--------------h~~~V~~l~~~~~~~~~l~s~s- 302 (536)
..+++++. ++.++++-+.++.|.+||... ..+..+.+ +-.....|++.+++ +.|+.+.
T Consensus 571 ~gvavd~~-~g~lyVaDs~n~rI~v~d~~G-----~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g-n~LYVaDt 643 (1057)
T PLN02919 571 GKLAIDLL-NNRLFISDSNHNRIVVTDLDG-----NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK-NLLYVADT 643 (1057)
T ss_pred ceEEEECC-CCeEEEEECCCCeEEEEeCCC-----CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCC-CEEEEEeC
Confidence 35788763 466777778888999999863 22322221 11235789999987 6666554
Q ss_pred CCCeEEEEECCCCeEEEeecC-----------------CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec
Q 009380 303 YDGLIRLMDAEKEVFDLVYSS-----------------EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL 365 (536)
Q Consensus 303 ~dg~I~vwd~~~~~~~~~~~~-----------------~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 365 (536)
..+.|+++|+.++....+.+. -.....++++|++..++++...++.|++||..++... .+.+
T Consensus 644 ~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G 722 (1057)
T PLN02919 644 ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG 722 (1057)
T ss_pred CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence 457899999988766544321 0134679999965466677778889999998776432 2211
Q ss_pred ---------------cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC---------CCcceeec--------c
Q 009380 366 ---------------HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK---------PEPMKVLS--------H 413 (536)
Q Consensus 366 ---------------h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~---------~~~~~~~~--------~ 413 (536)
.-.....|+++|++..++++-+.++.|++||+.++.... .....+-. .
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence 112356799999886577777778999999998643100 00000000 1
Q ss_pred cCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC---C-----CCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380 414 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN---Q-----TGRWISSFRAIWGWDDSCVFIGNMTRTV 485 (536)
Q Consensus 414 ~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~s~~g~~l~~gs~dg~I 485 (536)
-.....++++++|+++++-+.++.|++||..++.......... . ....-....++++++|+.+++-+.++.|
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 1134689999999988888899999999998765543332110 0 0001112236788999988888899999
Q ss_pred EEEcCCcccc
Q 009380 486 EVISPAQRRS 495 (536)
Q Consensus 486 ~v~d~~~~~~ 495 (536)
++||+.+++.
T Consensus 883 rvid~~~~~~ 892 (1057)
T PLN02919 883 RYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCcc
Confidence 9999988754
No 266
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.26 E-value=3.8e-09 Score=106.61 Aligned_cols=265 Identities=10% Similarity=0.047 Sum_probs=164.8
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCc
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYA 326 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~ 326 (536)
.+..+++++.+|.|..+|..+ ++.+..+............ ++ ..++.++.+|.+..+|..+++..........
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~t----G~~~W~~~~~~~~~~~p~v--~~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 136 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAET----GKRLWRVDLDERLSGGVGA--DG-GLVFVGTEKGEVIALDAEDGKELWRAKLSSE 136 (377)
T ss_pred ECCEEEEECCCCeEEEEEccC----CcEeeeecCCCCcccceEE--cC-CEEEEEcCCCEEEEEECCCCcEeeeeccCce
Confidence 456888888899999999887 4555444433322222222 34 7888899999999999999987765554444
Q ss_pred eeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCe-----EEEEEecCCCCEEEEEeCCCcEEEEeCCCCC
Q 009380 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARI-----NTIDFNPRNPNIMATSSTDGTACIWDLRSMA 401 (536)
Q Consensus 327 i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i-----~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~ 401 (536)
+.+.-... + ..+++++.+|.|..||..+++.+..+......+ .+.... + ..++.+..+|.+..+|+++++
T Consensus 137 ~~~~p~v~-~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 137 VLSPPLVA-N-GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred eecCCEEE-C-CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCC
Confidence 43222222 2 478888889999999999998877665332211 111222 2 357778888999999998875
Q ss_pred CCCCCcceee-ccc--CceeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEE
Q 009380 402 TDKPEPMKVL-SHK--RAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCV 476 (536)
Q Consensus 402 ~~~~~~~~~~-~~~--~~v~~l~~sp--~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 476 (536)
.......... +.. .....+.-+| .+..+++++.+|.+..||..+++......... ... + ...+..|
T Consensus 212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~~~---p--~~~~~~v 282 (377)
T TIGR03300 212 PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS----YQG---P--AVDDNRL 282 (377)
T ss_pred EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC----ccC---c--eEeCCEE
Confidence 2111000000 000 0000111112 35578888899999999999887665543211 111 1 1245688
Q ss_pred EEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 477 FIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 477 ~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
++++.+|.|..+|..+++.+........... ..... .+..|++++.+|.|++||.+
T Consensus 283 yv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~-ssp~i---~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 283 YVTDADGVVVALDRRSGSELWKNDELKYRQL-TAPAV---VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred EEECCCCeEEEEECCCCcEEEccccccCCcc-ccCEE---ECCEEEEEeCCCEEEEEECC
Confidence 8888999999999999987766532111111 11111 24789999999999999863
No 267
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=4.5e-10 Score=117.20 Aligned_cols=196 Identities=15% Similarity=0.135 Sum_probs=144.9
Q ss_pred CEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCcee-----EEEecCCCCCEEEEEECCCeEEEEECCCCc
Q 009380 284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF-----SLSQQPNNVNTLYFGEGQGGLNIWDVRSRK 358 (536)
Q Consensus 284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~-----~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~ 358 (536)
.|....+.-.. ..++.++.+..+.+||...+....-..+...++ -+.++++. -++++|+.-+.|.+|+..-.+
T Consensus 89 wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 89 WIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccC
Confidence 34444455555 788888889999999998776554444433221 12234443 678889999999999988444
Q ss_pred cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcE
Q 009380 359 SATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTI 438 (536)
Q Consensus 359 ~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I 438 (536)
.-..+.+|.+.|.++.|+-+| .++++.|.|+++++|++.+.+. .....++|...|+.+.|.|+ .++|++.|-+.
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~---~~~~~fgHsaRvw~~~~~~n--~i~t~gedctc 240 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREV---LGCTGFGHSARVWACCFLPN--RIITVGEDCTC 240 (967)
T ss_pred CcceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccc---cCcccccccceeEEEEeccc--eeEEeccceEE
Confidence 334678999999999999988 7999999999999999998642 22466799999999999998 89999999999
Q ss_pred EEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380 439 GIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 439 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~ 492 (536)
++|+.... .+..+... .+..+. +++..++...+++++.|+.+++|+..+
T Consensus 241 rvW~~~~~-~l~~y~~h--~g~~iw--~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 241 RVWGVNGT-QLEVYDEH--SGKGIW--KIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEecccc-eehhhhhh--hhccee--EEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99976433 33333221 222222 255677778899999999999999854
No 268
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.25 E-value=1.3e-10 Score=116.59 Aligned_cols=284 Identities=16% Similarity=0.194 Sum_probs=186.3
Q ss_pred cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC--CEEEEEEecCC--CCEEEEEECCCeEE
Q 009380 233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG--PISGIVTQQYC--LSKIFTSCYDGLIR 308 (536)
Q Consensus 233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~--~V~~l~~~~~~--~~~l~s~s~dg~I~ 308 (536)
..+.+..+..+| .|+-++.++.-| +.+-|++... ... .+..|.. .|-.+.|+|.. +..+++.+ ...-.
T Consensus 23 v~~~~~a~si~p--~grdi~lAsr~g-l~i~dld~p~---~pp-r~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkai 94 (1081)
T KOG0309|consen 23 VDGGFNAVSINP--SGRDIVLASRQG-LYIIDLDDPF---TPP-RWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAI 94 (1081)
T ss_pred ecCcccceeecc--ccchhhhhhhcC-eEEEeccCCC---CCc-eeeeccCcchhcceecccCCCCceeEEecC-cchhh
Confidence 467888999999 888888888765 5667877642 222 2222332 36677887753 13344444 34455
Q ss_pred EEECCCC----eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEE
Q 009380 309 LMDAEKE----VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIM 383 (536)
Q Consensus 309 vwd~~~~----~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l 383 (536)
+|++... .-..+.+|...|+.+-|+|..+..+++++.|-.+..||+++... +..+..-...-..|+|+-.+++.+
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL 174 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchh
Confidence 8987643 22234578899999999999999999999999999999998654 566555555667899998887777
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcc--eEEeccCCCCc
Q 009380 384 ATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENT--SMIHHNNQTGR 460 (536)
Q Consensus 384 ~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~--~~~~~~~~~~~ 460 (536)
|+. ....|.+||++.+. .......+|...|+.+.|.. ....+.+++.|++|+.||....... ..+..+ .
T Consensus 175 ass-hg~~i~vwd~r~gs---~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~----~ 246 (1081)
T KOG0309|consen 175 ASS-HGNDIFVWDLRKGS---TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN----F 246 (1081)
T ss_pred hhc-cCCceEEEeccCCC---cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecccc----C
Confidence 665 45679999999975 34455567999999999987 3456889999999999998643222 222111 1
Q ss_pred eeeeeEEEEcCCCC--EEEEEcCCCcEEEEcCC----------ccccceeccCCceeeeeeeEeecCC---------CCC
Q 009380 461 WISSFRAIWGWDDS--CVFIGNMTRTVEVISPA----------QRRSVATLQSPYISAIPCRFHAHPH---------QVG 519 (536)
Q Consensus 461 ~~~~~~~~~s~~g~--~l~~gs~dg~I~v~d~~----------~~~~~~~l~~~~~~~~~~~~~~~p~---------~~~ 519 (536)
. +.+..+-|-|. ++.---.+..+.+++.+ ..+.+++|.+|...++ .|.|-.. +.-
T Consensus 247 p--iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~--eFlWR~r~e~~~d~d~rdf 322 (1081)
T KOG0309|consen 247 P--IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL--EFLWRKRKECDGDYDSRDF 322 (1081)
T ss_pred c--ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHH--HHhhhhcccccCCCCccce
Confidence 1 11233334332 22222222244444432 2346778887655443 3333211 124
Q ss_pred EEEEEccCCeEEEEecC
Q 009380 520 TLAGATGGGQVYVWTSD 536 (536)
Q Consensus 520 ~lasgs~Dg~v~iW~~d 536 (536)
+|+|-+.|..|++|-++
T Consensus 323 QLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 323 QLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eEEEeecCCceEeeecc
Confidence 79999999999999874
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=3.6e-11 Score=130.88 Aligned_cols=197 Identities=15% Similarity=0.235 Sum_probs=152.7
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEecc-CCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT-HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA 312 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~ 312 (536)
-..|.++.-|| ...+.+||+.||.|++|.... +..+..+.. -...|+.+.|+.+| +.+..+..||.+.+|.+
T Consensus 2208 v~~v~r~~sHp--~~~~Yltgs~dgsv~~~~w~~----~~~v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2208 VENVRRMTSHP--SDPYYLTGSQDGSVRMFEWGH----GQQVVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred cCceeeecCCC--CCceEEecCCCceEEEEeccC----CCeEEEeeccCcchhhhhhhcccC-CceeeeccCCceeeccc
Confidence 45677777888 778999999999999999987 445554432 23779999999999 99999999999999999
Q ss_pred CCCeEEEeecCCCceeEEEecCCCCCEEEEEE---CCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEEEEEeC
Q 009380 313 EKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE---GQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMATSST 388 (536)
Q Consensus 313 ~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~---~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~ 388 (536)
....+.....|+.....+.|-. ..+++++ .++.+.+||..-... ...-..|.+.++++++.|.. ++|++|+.
T Consensus 2281 ~pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~-qllisggr 2356 (2439)
T KOG1064|consen 2281 SPKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH-QLLISGGR 2356 (2439)
T ss_pred CCcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc-eEEEecCC
Confidence 8666666667888888888875 3566654 568999999764322 12226899999999999966 79999999
Q ss_pred CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc
Q 009380 389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN 455 (536)
Q Consensus 389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~ 455 (536)
+|.|++||++..+ .. |.-+. ++ ...+|++++..|.|+||++.....+..+.+.
T Consensus 2357 ~G~v~l~D~rqrq-----l~----h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQ-----LR----HTFQA----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred cCcEEEeehHHHH-----HH----HHhhh----hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 9999999998732 22 22222 44 5678999999999999999988777776543
No 270
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.24 E-value=3.1e-09 Score=94.76 Aligned_cols=259 Identities=15% Similarity=0.110 Sum_probs=164.3
Q ss_pred ceEEecccccCccccccccCCceEEEEEEec---CCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEe
Q 009380 215 SCVDIGSLTLKPENIARIMPGRITQMKFLPC---SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQ 291 (536)
Q Consensus 215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~---~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~ 291 (536)
..+.+|++...+..+...- ..+.|.|. ....+||.|+..|...+|...+. .........|...|+-+.=.
T Consensus 52 ~sv~i~~~y~N~~~iv~~y----~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn---~~h~~~cd~snn~v~~~~r~ 124 (344)
T KOG4532|consen 52 ISVPINSHYSNPKGIVEFY----TGMTFTPGSFINKCVTLADGGASGQFDLFACNTN---DGHLYQCDVSNNDVTLVKRY 124 (344)
T ss_pred eeeEeccccCCchhhEEee----ecccccchHhhccccEEEeccccceeeeecccCc---ccceeeecccccchhhhhhh
Confidence 3678888766664333322 45566652 23468999999999999999864 23333444444433322222
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEeec-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc-c-ce-eEeccC
Q 009380 292 QYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-S-AT-EWLLHE 367 (536)
Q Consensus 292 ~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~-~~-~~~~h~ 367 (536)
.+...-+..++.|.++++.+++.+....... ..-.+.++.+++++ .++++.+....|..|.+.... . +. ......
T Consensus 125 cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 125 CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred cccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 2222457778889999999887654332222 12348899999998 788888888899999887532 2 23 222445
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCC-cceeecccCceeEEEEccCCC--eEEEEeCCCcEEEEeCC
Q 009380 368 ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPE-PMKVLSHKRAVHSAYFSPSGS--SLATTSFDDTIGIWSGV 444 (536)
Q Consensus 368 ~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~-~~~~~~~~~~v~~l~~sp~g~--~l~t~s~dg~I~iwd~~ 444 (536)
+.-.+..|+..+ ..||++..||++.|||+|........ ......|.+.+..+.|++-|. +|+..-.=+.+.+-|++
T Consensus 204 D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 204 DHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred CCceeeeeccCc-ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 566788999866 68999999999999999986421111 112225899999999998553 44444455779999999
Q ss_pred CCCcceEEeccCCCC---ceeeeeEEEEcCCCCEEEEEcCC
Q 009380 445 NFENTSMIHHNNQTG---RWISSFRAIWGWDDSCVFIGNMT 482 (536)
Q Consensus 445 ~~~~~~~~~~~~~~~---~~~~~~~~~~s~~g~~l~~gs~d 482 (536)
++.....+....... ....++...|+.++..+.+.+.+
T Consensus 283 ~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 283 NYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred cCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 988776664222110 00112334566666655555543
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.23 E-value=3.1e-08 Score=96.17 Aligned_cols=267 Identities=8% Similarity=-0.005 Sum_probs=160.7
Q ss_pred cceEEecccccCccccccccCC-ceEEEEEEecCCccEEEEEeC----------CCcEEEEECCCCCCCCCceEEeccC-
Q 009380 214 GSCVDIGSLTLKPENIARIMPG-RITQMKFLPCSDVRMVVAGSK----------LGNITFWNLDSQQDEDNGIYLFRTH- 281 (536)
Q Consensus 214 dg~v~lw~~~~~~~~~~~~~~~-~I~~v~~~p~~~~~~l~tg~~----------dg~v~iwd~~~~~~~~~~~~~~~~h- 281 (536)
.|.|.+.|....... ...-.+ .-..+ ++| |++.|.++.. +..|.+||+.+ ...+..+..-
T Consensus 26 ~~~v~ViD~~~~~v~-g~i~~G~~P~~~-~sp--Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t----~~~~~~i~~p~ 97 (352)
T TIGR02658 26 TTQVYTIDGEAGRVL-GMTDGGFLPNPV-VAS--DGSFFAHASTVYSRIARGKRTDYVEVIDPQT----HLPIADIELPE 97 (352)
T ss_pred CceEEEEECCCCEEE-EEEEccCCCcee-ECC--CCCEEEEEeccccccccCCCCCEEEEEECcc----CcEEeEEccCC
Confidence 367788876443211 111111 11224 999 8887776654 78999999998 5555555421
Q ss_pred ------CCCEEEEEEecCCCCEEEEEE-C-CCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEE
Q 009380 282 ------LGPISGIVTQQYCLSKIFTSC-Y-DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWD 353 (536)
Q Consensus 282 ------~~~V~~l~~~~~~~~~l~s~s-~-dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d 353 (536)
...-..++++|+| ++|+... . +..|.+.|+.+++............-+..+.+. ..+-+.||......
T Consensus 98 ~p~~~~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~---~~~~~~Dg~~~~v~ 173 (352)
T TIGR02658 98 GPRFLVGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDT---FFMHCRDGSLAKVG 173 (352)
T ss_pred CchhhccCccceEEECCCC-CEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCc---cEEEeecCceEEEE
Confidence 2233478999999 8888765 3 799999999999877665544433333333322 22334555555444
Q ss_pred CCC-Cccc-eeEe-ccC--CCeE-EEEEec-CCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec--------ccCcee
Q 009380 354 VRS-RKSA-TEWL-LHE--ARIN-TIDFNP-RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS--------HKRAVH 418 (536)
Q Consensus 354 ~~~-~~~~-~~~~-~h~--~~i~-~i~~~p-~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~--------~~~~v~ 418 (536)
+.+ ++.. .... -+. ..+. .-.|.+ ++ .++..... |+|.+.|+............... ....+.
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q 251 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ 251 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcce
Confidence 332 2211 1100 011 0000 003455 55 45555554 99999997654322222222211 234455
Q ss_pred EEEEccCCCeEEEEe----------CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC-EEEEEc-CCCcEE
Q 009380 419 SAYFSPSGSSLATTS----------FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS-CVFIGN-MTRTVE 486 (536)
Q Consensus 419 ~l~~sp~g~~l~t~s----------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs-~dg~I~ 486 (536)
-++++|+++.+++.. ..+.|.++|..+++.+..+.. +..... +++++|++ +|++.+ .++.|.
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~--iavS~Dgkp~lyvtn~~s~~Vs 325 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDS--INVSQDAKPLLYALSTGDKTLY 325 (352)
T ss_pred eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCceee--EEECCCCCeEEEEeCCCCCcEE
Confidence 599999998888743 124799999999988888743 222333 67899999 888777 468899
Q ss_pred EEcCCccccceecc
Q 009380 487 VISPAQRRSVATLQ 500 (536)
Q Consensus 487 v~d~~~~~~~~~l~ 500 (536)
++|..+++.+.++.
T Consensus 326 ViD~~t~k~i~~i~ 339 (352)
T TIGR02658 326 IFDAETGKELSSVN 339 (352)
T ss_pred EEECcCCeEEeeec
Confidence 99999999988873
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1.5e-09 Score=108.62 Aligned_cols=282 Identities=13% Similarity=0.129 Sum_probs=185.8
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCC-----------CceEEeccCCCCEEEEEEecCCCCEEEEEE
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDED-----------NGIYLFRTHLGPISGIVTQQYCLSKIFTSC 302 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~-----------~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s 302 (536)
.....|+.|+. +..+||+|+.||.++|..+.+..... ....++.+|.+.|.-+.|+... +.|-|..
T Consensus 14 nvkL~c~~WNk--e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSD 90 (1189)
T KOG2041|consen 14 NVKLHCAEWNK--ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSD 90 (1189)
T ss_pred CceEEEEEEcc--cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccC
Confidence 34578999999 88999999999999999987643211 1234678999999999999987 8999999
Q ss_pred CCCeEEEEECCCCeEEEee---cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCC
Q 009380 303 YDGLIRLMDAEKEVFDLVY---SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRN 379 (536)
Q Consensus 303 ~dg~I~vwd~~~~~~~~~~---~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~ 379 (536)
.+|.|.||-+-++....-. ...+.|.+++|+.+| ..++....||.|.+=.+...+. .--.........+.|++|.
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRI-wgKeLkg~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRI-WGKELKGQLLAHVLWSEDL 168 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeecccee-cchhcchheccceeecccH
Confidence 9999999999887653222 345789999999998 7888888999888766654322 1111112234478999987
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCC--Cc-cee----ecccCceeEEEEc--------cCCCeEEEEeCCCcEEEEeCC
Q 009380 380 PNIMATSSTDGTACIWDLRSMATDKP--EP-MKV----LSHKRAVHSAYFS--------PSGSSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 380 ~~~l~s~s~dg~i~iwdl~~~~~~~~--~~-~~~----~~~~~~v~~l~~s--------p~g~~l~t~s~dg~I~iwd~~ 444 (536)
..++.+-.+|.+.+||....-.... .+ +.. ......|..+.|. |+...|+++-..|.+.|-.-.
T Consensus 169 -~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~e 247 (1189)
T KOG2041|consen 169 -EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSE 247 (1189)
T ss_pred -HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhc
Confidence 4566666789999999764210000 00 111 1122235566664 366789999999988887655
Q ss_pred CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC---------CcEEEEcCCccccceeccCCceeeeeeeEeecC
Q 009380 445 NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT---------RTVEVISPAQRRSVATLQSPYISAIPCRFHAHP 515 (536)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d---------g~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p 515 (536)
+-.....+ .++ ...+.+.|+++|..|++++.+ +.|.+|..- |..+.+++.+...+ +.++|-.
T Consensus 248 ND~~Pvv~----dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg~~I--t~lsWEg 318 (1189)
T KOG2041|consen 248 NDPEPVVV----DTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPGSCI--TGLSWEG 318 (1189)
T ss_pred CCCCCeEE----ecc--cEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCCcee--eeeEEcC
Confidence 44444343 222 233447899999999998764 356666543 44666666544333 3566753
Q ss_pred CCCCEEEEEccCCeEEE
Q 009380 516 HQVGTLAGATGGGQVYV 532 (536)
Q Consensus 516 ~~~~~lasgs~Dg~v~i 532 (536)
. .+=+.-..|+.|++
T Consensus 319 -~-gLriA~Avdsfiyf 333 (1189)
T KOG2041|consen 319 -T-GLRIAIAVDSFIYF 333 (1189)
T ss_pred -C-ceEEEEEecceEEE
Confidence 1 22223334555554
No 273
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.22 E-value=3.8e-09 Score=95.82 Aligned_cols=242 Identities=13% Similarity=0.162 Sum_probs=143.1
Q ss_pred eecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCC
Q 009380 189 CKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQ 268 (536)
Q Consensus 189 ~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~ 268 (536)
+..+.+|++||...+.-+.+.+...| |..-.....+.+--.-.=..++|+| |+.+||.+...|+|++||+..
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Dd-----f~si~~kcqVpkD~~PQWRkl~WSp--D~tlLa~a~S~G~i~vfdl~g- 74 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDD-----FSSIIGKCQVPKDPNPQWRKLAWSP--DCTLLAYAESTGTIRVFDLMG- 74 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCC-----chheeEEEecCCCCCchheEEEECC--CCcEEEEEcCCCeEEEEeccc-
Confidence 34678999999886666665433222 1111111122222233456799999 999999999999999999984
Q ss_pred CCCCCceEEecc-------CCCCEEEEEEecCC-----CCEEEEEECCCeEEEEECCCC---eEEE--e----ecCCCce
Q 009380 269 QDEDNGIYLFRT-------HLGPISGIVTQQYC-----LSKIFTSCYDGLIRLMDAEKE---VFDL--V----YSSEYAV 327 (536)
Q Consensus 269 ~~~~~~~~~~~~-------h~~~V~~l~~~~~~-----~~~l~s~s~dg~I~vwd~~~~---~~~~--~----~~~~~~i 327 (536)
..+..+.+ -...|..+.|.+.. ...|+.-.++|.++-|-+..+ .... . ......|
T Consensus 75 ----~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi 150 (282)
T PF15492_consen 75 ----SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI 150 (282)
T ss_pred ----ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence 23333222 23567777776542 246888889998888876321 2111 1 1246789
Q ss_pred eEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC-CCc------EEEEeCCCC
Q 009380 328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST-DGT------ACIWDLRSM 400 (536)
Q Consensus 328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~-dg~------i~iwdl~~~ 400 (536)
.++.|+|.. ++|++|+.... ..+ ........+++-....+.+++..+.+. |+. ..+|.+-+.
T Consensus 151 ~~~vy~p~h-~LLlVgG~~~~------~~~----~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~ 219 (282)
T PF15492_consen 151 NSAVYHPKH-RLLLVGGCEQN------QDG----MSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF 219 (282)
T ss_pred eEEEEcCCC-CEEEEeccCCC------CCc----cccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce
Confidence 999999997 78887765422 000 011122233333333333333322222 221 123332221
Q ss_pred CCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC
Q 009380 401 ATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ 457 (536)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~ 457 (536)
. ...........|..+..||||..|++.+.+|.|.+|++.+...........+
T Consensus 220 ~----~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 220 K----FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred e----eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 0 0011123467899999999999999999999999999988776666544333
No 274
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.21 E-value=7.6e-10 Score=100.52 Aligned_cols=252 Identities=19% Similarity=0.268 Sum_probs=170.5
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC-CCCceEEeccCC------------CCEEEEEEecC-CCCEEE
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD-EDNGIYLFRTHL------------GPISGIVTQQY-CLSKIF 299 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~h~------------~~V~~l~~~~~-~~~~l~ 299 (536)
.+.|++|.|.. .|.||++|.+.|.|.+|.-..... +.+....|++|. ..|..|.|..+ +...++
T Consensus 26 ad~ItaVefd~--tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 26 ADKITAVEFDE--TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cceeeEEEecc--ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 45699999998 899999999999999998764321 123344566664 34778888655 345688
Q ss_pred EEECCCeEEEEECCCCeE------------------------------------------EEee--cCCCceeEEEecCC
Q 009380 300 TSCYDGLIRLMDAEKEVF------------------------------------------DLVY--SSEYAVFSLSQQPN 335 (536)
Q Consensus 300 s~s~dg~I~vwd~~~~~~------------------------------------------~~~~--~~~~~i~~l~~~~~ 335 (536)
..+.|.+|++|.+....+ ..++ .|..-|.++.|+.+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 888999999998753210 0111 35556788999887
Q ss_pred CCCEEEEEECCCeEEEEECCCCcc---ceeEeccC-----CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC-CC-C
Q 009380 336 NVNTLYFGEGQGGLNIWDVRSRKS---ATEWLLHE-----ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT-DK-P 405 (536)
Q Consensus 336 ~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~h~-----~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~-~~-~ 405 (536)
. ..++ ...|-.|.+|++.-... +..++.|. .-|++..|+|...++|.-.+..|.|++-|+|...- .. .
T Consensus 184 ~-et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 184 K-ETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred h-heee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 6 3444 45566899998875433 22223332 45889999998878888888899999999995320 00 0
Q ss_pred Ccc----------eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC-CcceEEeccC----------CCCceeee
Q 009380 406 EPM----------KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF-ENTSMIHHNN----------QTGRWISS 464 (536)
Q Consensus 406 ~~~----------~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~-~~~~~~~~~~----------~~~~~~~~ 464 (536)
... .+.+-...|..+.|+++|++|++-+. -+|+|||++.. .++.++.... .......-
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 000 01123467889999999999987664 57999999854 4555553211 11223344
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380 465 FRAIWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 465 ~~~~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
+.+.||.|.+.+++|+..+..-+|-.
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEEEecCCcccccccccccceeeecc
Confidence 67889999999999988877777753
No 275
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.20 E-value=5.8e-10 Score=98.94 Aligned_cols=200 Identities=15% Similarity=0.197 Sum_probs=124.3
Q ss_pred eEEEEEEecCCccEEEEEeCCCcEEEEECCC--------CCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380 237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDS--------QQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR 308 (536)
Q Consensus 237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~--------~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~ 308 (536)
|+.+.++. ...|+++..++.+..+.... ..........+..|+++-.+-+.+-.+ +-++++..||.+.
T Consensus 39 ~~~~~~v~---~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~-t~V~~~~~dg~~~ 114 (319)
T KOG4714|consen 39 LSKVSLSA---EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTD-NRVCIGYADGSLA 114 (319)
T ss_pred EEEeechh---hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccC-CceEecCCCceEE
Confidence 55555553 34566665555544433221 111123445555666554444444445 7899999999999
Q ss_pred EEECCCCeEEEe---ecCCCceeEEEecCCCCCEEEEEE-----CCCeEEEEECCCCccceeEeccCCCeEEEEEecCCC
Q 009380 309 LMDAEKEVFDLV---YSSEYAVFSLSQQPNNVNTLYFGE-----GQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNP 380 (536)
Q Consensus 309 vwd~~~~~~~~~---~~~~~~i~~l~~~~~~~~~l~~g~-----~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~ 380 (536)
+++.+.- +... ......-.+.++...+ +.+.++. .-+..+.|+++..+.+..-......|.+++-+|...
T Consensus 115 v~s~~~~-~~~~~~i~~~~~~~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq 192 (319)
T KOG4714|consen 115 VFSTDKD-LALMSRIPSIHSGSASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQ 192 (319)
T ss_pred EEechHH-Hhhhhhcccccccccccceeecc-cEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccc
Confidence 9998761 1110 0011111222333333 3443322 123566777664433222222334599999999888
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCC
Q 009380 381 NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~ 445 (536)
+++++|+.||.+.+||.|+.. .....+..|+..|+.+-|+| ++..|++++.||.+.-||..+
T Consensus 193 ~~v~cgt~dg~~~l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 193 HLVCCGTDDGIVGLWDARNVA---MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cEEEEecCCCeEEEEEccccc---chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 899999999999999999863 12333447999999999999 788999999999999999754
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.20 E-value=1.6e-08 Score=113.29 Aligned_cols=247 Identities=11% Similarity=0.061 Sum_probs=156.3
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-C-------------CCceeEEEecCCCCCEEEEEE-CCCeEE
Q 009380 286 SGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-S-------------EYAVFSLSQQPNNVNTLYFGE-GQGGLN 350 (536)
Q Consensus 286 ~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-~-------------~~~i~~l~~~~~~~~~l~~g~-~dg~i~ 350 (536)
..+++++.+..++++-+.++.|++||........+-. . -.....+++.+++ +.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g-n~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK-NLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCC-CEEEEEeCCCceEE
Confidence 4678887653677777788999999987654333222 0 0135788999887 5565554 567899
Q ss_pred EEECCCCccceeEecc-----------------CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC----CCcce
Q 009380 351 IWDVRSRKSATEWLLH-----------------EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK----PEPMK 409 (536)
Q Consensus 351 i~d~~~~~~~~~~~~h-----------------~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~----~~~~~ 409 (536)
++|+.++. +.++.+. -..-..|+|+|++..++++.+.++.|++||..++.... .....
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 99987654 3333210 11345799999665788888888999999987642100 00000
Q ss_pred ee------cccCceeEEEEccCCCeE-EEEeCCCcEEEEeCCCCCcceEEec-----------cCCCC-----ceeeeeE
Q 009380 410 VL------SHKRAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTSMIHH-----------NNQTG-----RWISSFR 466 (536)
Q Consensus 410 ~~------~~~~~v~~l~~sp~g~~l-~t~s~dg~I~iwd~~~~~~~~~~~~-----------~~~~~-----~~~~~~~ 466 (536)
.. ..-...+.++|+|+|..| ++-+.++.|++||+.++........ ....+ .......
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 00 011345679999998844 4555678999999987543211100 00000 0112234
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCc------------eeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 467 AIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY------------ISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 467 ~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~------------~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
++++++|..+++-+.++.|++||..++.... +.+.. .-..+..+++++ ++.++++-+.++.|++||
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 6789999988888899999999998875432 22110 001234567777 568899999999999999
Q ss_pred cC
Q 009380 535 SD 536 (536)
Q Consensus 535 ~d 536 (536)
++
T Consensus 887 ~~ 888 (1057)
T PLN02919 887 LN 888 (1057)
T ss_pred CC
Confidence 74
No 277
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=5.9e-09 Score=102.86 Aligned_cols=181 Identities=15% Similarity=0.251 Sum_probs=141.0
Q ss_pred cccceEEecccccCcccccc----ccCCceEEEEEE------e------------cCCccEEEEEeCCCcEEEEECCCCC
Q 009380 212 EVGSCVDIGSLTLKPENIAR----IMPGRITQMKFL------P------------CSDVRMVVAGSKLGNITFWNLDSQQ 269 (536)
Q Consensus 212 ~~dg~v~lw~~~~~~~~~~~----~~~~~I~~v~~~------p------------~~~~~~l~tg~~dg~v~iwd~~~~~ 269 (536)
..||.+++|+...+...... ...+..++..|. | ..+...++-|...|.|.+|++..
T Consensus 12 ~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~-- 89 (541)
T KOG4547|consen 12 TGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAG-- 89 (541)
T ss_pred CCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecC--
Confidence 56789999997554332211 114444555553 2 12456788899999999999986
Q ss_pred CCCCceEEe--ccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-CCCceeEEEecCCCCCEEEEEECC
Q 009380 270 DEDNGIYLF--RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQ 346 (536)
Q Consensus 270 ~~~~~~~~~--~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~d 346 (536)
++....+ ..|.+.|.++.++.+- ..|++++.|+.+..|+...+....... ....+.+++.+|++ .++++++
T Consensus 90 --g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~-~~l~~as-- 163 (541)
T KOG4547|consen 90 --GEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG-KILLTAS-- 163 (541)
T ss_pred --CeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC-CEEEecc--
Confidence 4444444 4699999999999887 899999999999999999987776664 46788999999997 7887776
Q ss_pred CeEEEEECCCCccceeEeccCCCeEEEEEecC-----CCCEEEEEeCCCcEEEEeCCCC
Q 009380 347 GGLNIWDVRSRKSATEWLLHEARINTIDFNPR-----NPNIMATSSTDGTACIWDLRSM 400 (536)
Q Consensus 347 g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~-----~~~~l~s~s~dg~i~iwdl~~~ 400 (536)
++|.+||+++++.+.+|.+|.++|+++.|.-. |.++|.+...+..+.+|-+...
T Consensus 164 ~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 164 RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 48999999999999999999999999999876 5566666667778889987763
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.14 E-value=6.6e-08 Score=106.44 Aligned_cols=285 Identities=14% Similarity=0.113 Sum_probs=181.6
Q ss_pred CceEEEEEEecCCccEEEEEeCCC--cEEEEECCCCCCCCCceEEec-----cCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLG--NITFWNLDSQQDEDNGIYLFR-----THLGPISGIVTQQYCLSKIFTSCYDGLI 307 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~-----~h~~~V~~l~~~~~~~~~l~s~s~dg~I 307 (536)
..+...+|.+..+.-+++++.... .|.+....... ....+..+. ...+.|.++.|.++. ..++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~~~~~~~~~~ivs~~yl~d~-~~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDG-SVEVLASWDAPLPDDPNDKIVSFQYLADS-ESLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCC-ceeEEEeccccCCcCCCCcEEEEEeccCC-CcEEEEECCceE
Confidence 457778888743444444444333 23333333211 012233332 335679999999998 889999999999
Q ss_pred EEE----ECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC---------------C--------Cccc
Q 009380 308 RLM----DAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR---------------S--------RKSA 360 (536)
Q Consensus 308 ~vw----d~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~---------------~--------~~~~ 360 (536)
.+. +........+-..+..|.+++|+||+ .+|+..+.+|+|.+.+-. . |+.-
T Consensus 100 ~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe 178 (928)
T PF04762_consen 100 ILVREDPDPDEDEIEIVGSVDSGILAASWSPDE-ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKE 178 (928)
T ss_pred EEEEccCCCCCceeEEEEEEcCcEEEEEECCCc-CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCccc
Confidence 999 77777777777778999999999998 799999999888776421 0 0000
Q ss_pred eeEec------------------------cCCCeEEEEEecCCCCEEEEEeC---C---CcEEEEeCCCCCCCCCCccee
Q 009380 361 TEWLL------------------------HEARINTIDFNPRNPNIMATSST---D---GTACIWDLRSMATDKPEPMKV 410 (536)
Q Consensus 361 ~~~~~------------------------h~~~i~~i~~~p~~~~~l~s~s~---d---g~i~iwdl~~~~~~~~~~~~~ 410 (536)
..|.| +.+.-..|+|-.|| .+||+.+. . +.|+||+-. |. ....
T Consensus 179 TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~Re-G~-----L~st 251 (928)
T PF04762_consen 179 TQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSRE-GE-----LQST 251 (928)
T ss_pred CccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCC-ce-----EEec
Confidence 11110 22345678999988 68887764 2 579999955 31 2221
Q ss_pred e-cccCceeEEEEccCCCeEEEEeC---CCcEEEEeCCCCCcceEEeccC-CCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380 411 L-SHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVNFENTSMIHHNN-QTGRWISSFRAIWGWDDSCVFIGNMTRTV 485 (536)
Q Consensus 411 ~-~~~~~v~~l~~sp~g~~l~t~s~---dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~l~~gs~dg~I 485 (536)
. .-.+--.+++|.|.|++||+... ...|.+|.- +|-....+.... ... ..+..+.|++|+..|++.-.|. |
T Consensus 252 SE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~--~~v~~l~Wn~ds~iLAv~~~~~-v 327 (928)
T PF04762_consen 252 SEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEE--EKVIELAWNSDSEILAVWLEDR-V 327 (928)
T ss_pred cccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCC--ceeeEEEECCCCCEEEEEecCC-c
Confidence 1 22333457899999999988764 344777763 444333343221 122 2335588999999999987665 9
Q ss_pred EEEcCCcccc--ceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 486 EVISPAQRRS--VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 486 ~v~d~~~~~~--~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
.+|-..+..- -+.+........ ..+.|||.+...|...+.+|.+..++
T Consensus 328 qLWt~~NYHWYLKqei~~~~~~~~-~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 328 QLWTRSNYHWYLKQEIRFSSSESV-NFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred eEEEeeCCEEEEEEEEEccCCCCC-CceEECCCCCCEEEEEecCCcEEEEE
Confidence 9998876531 122222222222 23899998888898888888887665
No 279
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.13 E-value=1.1e-09 Score=97.18 Aligned_cols=205 Identities=16% Similarity=0.159 Sum_probs=125.2
Q ss_pred eeecCCCCcccccccccccccccccccceEEecccc--cCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEEC
Q 009380 188 TCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLT--LKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNL 265 (536)
Q Consensus 188 ~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~--~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~ 265 (536)
.+.++.+-.++.......+-.+.....-.+.+|+-. .++..+...|.+.-.+-+.+- .++-++++..||.+.+++.
T Consensus 41 ~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~--~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 41 KVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTM--TDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccc--cCCceEecCCCceEEEEec
Confidence 333444444444444444444444444455566532 233333344444333333443 5678999999999999998
Q ss_pred CCCCCCCCceEEe-ccCCCCEEEEEEecCCCCEEEEEEC-----CCeEEEEECCCCeE-EEeecCCCceeEEEecCCCCC
Q 009380 266 DSQQDEDNGIYLF-RTHLGPISGIVTQQYCLSKIFTSCY-----DGLIRLMDAEKEVF-DLVYSSEYAVFSLSQQPNNVN 338 (536)
Q Consensus 266 ~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~l~s~s~-----dg~I~vwd~~~~~~-~~~~~~~~~i~~l~~~~~~~~ 338 (536)
+.. ....... ..|.+.. +.++...+ +.+.++.- -+..+.|+++..+. .........|.+++-+|...+
T Consensus 119 ~~~---~~~~~~i~~~~~~~a-s~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~ 193 (319)
T KOG4714|consen 119 DKD---LALMSRIPSIHSGSA-SRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQH 193 (319)
T ss_pred hHH---Hhhhhhccccccccc-ccceeecc-cEEecCCcceEeeccceeeecccccccccccccccccchhhhCCccccc
Confidence 751 1111111 1122221 22222333 34443321 23345566553322 111222345999999999888
Q ss_pred EEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380 339 TLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS 399 (536)
Q Consensus 339 ~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~ 399 (536)
++++|+.||.+.+||.+.... +..+..|...|..|.|||.++..|+++++||.+--||..+
T Consensus 194 ~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 194 LVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999999999998754 5566789999999999999999999999999999999765
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=1.5e-07 Score=95.27 Aligned_cols=195 Identities=10% Similarity=-0.002 Sum_probs=125.1
Q ss_pred CEEEEEEecCCCCEEEEEECC---CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECC--CeEEEEECCCCc
Q 009380 284 PISGIVTQQYCLSKIFTSCYD---GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ--GGLNIWDVRSRK 358 (536)
Q Consensus 284 ~V~~l~~~~~~~~~l~s~s~d---g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d--g~i~i~d~~~~~ 358 (536)
.+..-.|+|++...++..+.+ ..|.++|+.++....+....+......|+|++..++++.+.+ ..|.++|+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 778899999993335544443 569999999998877776667677889999995555555444 568888987775
Q ss_pred cceeEeccCCCeEEEEEecCCCCEEEEEeCCC--cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-
Q 009380 359 SATEWLLHEARINTIDFNPRNPNIMATSSTDG--TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD- 435 (536)
Q Consensus 359 ~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg--~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d- 435 (536)
. ..+..+........|+|||..++++....+ .|+++|+.+++. ..+...+. ....|+|+|++|+..+..
T Consensus 269 ~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~---~rlt~~g~----~~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 269 L-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV---EQVVFHGK----NNSSVSTYKNYIVYSSRET 340 (419)
T ss_pred E-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe---EeCccCCC----cCceECCCCCEEEEEEcCC
Confidence 3 344434333345689999966666654444 577778876531 11111111 124899999988877654
Q ss_pred --------CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC---CcEEEEcCCcc
Q 009380 436 --------DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT---RTVEVISPAQR 493 (536)
Q Consensus 436 --------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d---g~I~v~d~~~~ 493 (536)
..|.+.|+.++... .+... +. ...+.|+|||+.|+..+.. ..+.++++...
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~-~LT~~---~~---~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIR-RLTAN---GV---NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeE-ECCCC---CC---cCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 26888888776532 22211 11 1127799999987765543 23566666554
No 281
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.3e-09 Score=102.12 Aligned_cols=262 Identities=15% Similarity=0.101 Sum_probs=182.9
Q ss_pred cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC-CCeEEE
Q 009380 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY-DGLIRL 309 (536)
Q Consensus 231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~-dg~I~v 309 (536)
..|.+.|+.+.... .+++.+++.||.++.|.-..... -..+..+..|.+.|.+++.+-++ .++.|.+. |..+++
T Consensus 6 ymhrd~i~hv~~tk---a~fiiqASlDGh~KFWkKs~isG-vEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~Kv 80 (558)
T KOG0882|consen 6 YMHRDVITHVFPTK---AKFIIQASLDGHKKFWKKSRISG-VEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKV 80 (558)
T ss_pred hcccceeeeEeeeh---hheEEeeecchhhhhcCCCCccc-eeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeE
Confidence 45788888887764 57999999999999998764111 34566778899999999999998 88888777 999999
Q ss_pred EECCCCeEEEeecCCCceeEEEec--CCCC-CEEEEE-ECCCeEEEEECCCCcc--ceeEeccCCCeEEEEEecCCCCEE
Q 009380 310 MDAEKEVFDLVYSSEYAVFSLSQQ--PNNV-NTLYFG-EGQGGLNIWDVRSRKS--ATEWLLHEARINTIDFNPRNPNIM 383 (536)
Q Consensus 310 wd~~~~~~~~~~~~~~~i~~l~~~--~~~~-~~l~~g-~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~i~~~p~~~~~l 383 (536)
+|+++-............-.++|. +.+. ..++++ -.+|.+.++|-....+ ...-..|..+|.++.++|.+ ..+
T Consensus 81 fDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~-Ds~ 159 (558)
T KOG0882|consen 81 FDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG-DSA 159 (558)
T ss_pred EEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc-cce
Confidence 999876544333322222223332 2211 134443 3578999999876543 33344799999999999977 688
Q ss_pred EEEeCCCcEEEEeCCC-CCCC----------CCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE
Q 009380 384 ATSSTDGTACIWDLRS-MATD----------KPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI 452 (536)
Q Consensus 384 ~s~s~dg~i~iwdl~~-~~~~----------~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~ 452 (536)
++....|.|.-|.... .+.. ......+........++.|+|+|..+.+-+.|..|++++..+++..+.+
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 8888899999998773 1100 0111222234667889999999999999999999999999887766554
Q ss_pred eccCC-----C-----------------------CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceec
Q 009380 453 HHNNQ-----T-----------------------GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATL 499 (536)
Q Consensus 453 ~~~~~-----~-----------------------~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l 499 (536)
..... . ........++|...|++|+-|+.=| |+|+++.++++...+
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 21100 0 0011122467899999999998765 888888887665443
No 282
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=7.2e-08 Score=94.42 Aligned_cols=292 Identities=14% Similarity=0.121 Sum_probs=177.1
Q ss_pred EEecccccC-ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC
Q 009380 217 VDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL 295 (536)
Q Consensus 217 v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 295 (536)
...|+...+ +..+..--.-.=+-+.||| -|.||++--..| |.+|--.+ ...+..|. |. .|.-+.|||..
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP--~GTYL~t~Hk~G-I~lWGG~~----f~r~~RF~-Hp-~Vq~idfSP~E- 261 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSP--KGTYLVTFHKQG-IALWGGES----FDRIQRFY-HP-GVQFIDFSPNE- 261 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecC--CceEEEEEeccc-eeeecCcc----HHHHHhcc-CC-CceeeecCCcc-
Confidence 355665442 2222222233457799999 999999988765 88997665 44555543 54 48889999998
Q ss_pred CEEEEEEC-----------CCeEEEEECCCCeEEEeecC---CCcee-EEEecCCCCCEEEEEECCCeEEEEECCCCccc
Q 009380 296 SKIFTSCY-----------DGLIRLMDAEKEVFDLVYSS---EYAVF-SLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA 360 (536)
Q Consensus 296 ~~l~s~s~-----------dg~I~vwd~~~~~~~~~~~~---~~~i~-~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~ 360 (536)
++|+|-+. ...++|||+.+|.....+.. ...++ -+.|+.++ .+++--..+ .|.||+..+..++
T Consensus 262 kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~~-sisIyEtpsf~ll 339 (698)
T KOG2314|consen 262 KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTGN-SISIYETPSFMLL 339 (698)
T ss_pred ceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC-ceeEEeccc-eEEEEecCceeee
Confidence 99998764 25799999999977665543 23333 35789888 677766665 8999997764443
Q ss_pred eeEeccCCCeEEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC-
Q 009380 361 TEWLLHEARINTIDFNPRNPNIMATSSTD-----GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF- 434 (536)
Q Consensus 361 ~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-----g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~- 434 (536)
..-...-..|....|+|.+ ++||-=... ..+.+-.+.+.. .+....-|.-.=..+.|-.+|.+|+.--.
T Consensus 340 d~Kslki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~----~iRt~nlfnVsDckLhWQk~gdyLcvkvdR 414 (698)
T KOG2314|consen 340 DKKSLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKR----EIRTKNLFNVSDCKLHWQKSGDYLCVKVDR 414 (698)
T ss_pred cccccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccc----eeeeccceeeeccEEEeccCCcEEEEEEEe
Confidence 3323345678899999965 566543321 234444444321 11111112222234667778888775321
Q ss_pred ---------CCcEEEEeCCCCCcc-eEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC---CcEEEEcCCcc----ccce
Q 009380 435 ---------DDTIGIWSGVNFENT-SMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT---RTVEVISPAQR----RSVA 497 (536)
Q Consensus 435 ---------dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d---g~I~v~d~~~~----~~~~ 497 (536)
=..+.|+.++..... ..+... -..+..+|.|.|..+++-+.+ .++.+|.+.+. +.+.
T Consensus 415 ~tK~~~~g~f~n~eIfrireKdIpve~velk------e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 415 HTKSKVKGQFSNLEIFRIREKDIPVEVVELK------ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred eccccccceEeeEEEEEeeccCCCceeeecc------hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 112555555443222 111111 134557899999886654433 57899988732 2334
Q ss_pred eccCCceeeeeeeEeecCCCCCEEEEE---ccCCeEEEEecC
Q 009380 498 TLQSPYISAIPCRFHAHPHQVGTLAGA---TGGGQVYVWTSD 536 (536)
Q Consensus 498 ~l~~~~~~~~~~~~~~~p~~~~~lasg---s~Dg~v~iW~~d 536 (536)
.+.. ..+..+.|+| .|++++.+ |..|.+.++|.+
T Consensus 489 ~~dk----~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 489 ELDK----KFANTVFWSP-KGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred hhcc----cccceEEEcC-CCcEEEEEEecccccceEEEecc
Confidence 4432 3344678999 57887765 457889998864
No 283
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.07 E-value=1.8e-07 Score=90.90 Aligned_cols=295 Identities=11% Similarity=0.063 Sum_probs=184.1
Q ss_pred ecccccceeeeecCCCCccccccccccc-----ccccccccceEEecccccCcccc-ccccCCc--eE-EEEEEecCCcc
Q 009380 179 IKDEFNGFKTCKDEGLGVGSCDLIKGVV-----KTEKIEVGSCVDIGSLTLKPENI-ARIMPGR--IT-QMKFLPCSDVR 249 (536)
Q Consensus 179 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~-----~~~~~~~dg~v~lw~~~~~~~~~-~~~~~~~--I~-~v~~~p~~~~~ 249 (536)
..--...|..+.|+|.+++|..-....+ ++.--..++.+.+||........ ..+...+ .+ -+.|+- +..
T Consensus 67 ~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~--~D~ 144 (561)
T COG5354 67 VRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI--DDK 144 (561)
T ss_pred eeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee--cch
Confidence 3444577889999999999986544444 22222344478999975443221 1122222 44 677887 666
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC-CEEEE-----EECCCeEEEEECCCCeEEEeec-
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL-SKIFT-----SCYDGLIRLMDAEKEVFDLVYS- 322 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~~l~s-----~s~dg~I~vwd~~~~~~~~~~~- 322 (536)
++|-- ....+.|+++.. .-.......++ ...|....|+|.+. ..|+. ...++.+++|.+..+.......
T Consensus 145 y~ARv-v~~sl~i~e~t~-n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l 220 (561)
T COG5354 145 YVARV-VGSSLYIHEITD-NIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL 220 (561)
T ss_pred hhhhh-ccCeEEEEecCC-ccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee
Confidence 66544 234799999732 21122222222 35688888998741 23332 3567889999988654433221
Q ss_pred CCCceeEEEecCCCCCEEEE-EE----------CCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE-eCCC
Q 009380 323 SEYAVFSLSQQPNNVNTLYF-GE----------GQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS-STDG 390 (536)
Q Consensus 323 ~~~~i~~l~~~~~~~~~l~~-g~----------~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~-s~dg 390 (536)
....=..+.|++.| ++|++ .- ...++++++++...+ .......++|..++|.|.+..+.+.. -.+-
T Consensus 221 fk~~~~qLkW~~~g-~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa 298 (561)
T COG5354 221 FKVSGVQLKWQVLG-KYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPA 298 (561)
T ss_pred EeecccEEEEecCC-ceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCCceeEEeccccc
Confidence 12233467788877 44433 11 124688999874433 33325689999999999875443333 4678
Q ss_pred cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC---CcEEEEeCCCCCcce-EEeccCCCCceeeeeE
Q 009380 391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTS-MIHHNNQTGRWISSFR 466 (536)
Q Consensus 391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d---g~I~iwd~~~~~~~~-~~~~~~~~~~~~~~~~ 466 (536)
.+.++|++.. +........=+.+.|+|.++++++++.| |.|.+||........ .+.. .+ +-.
T Consensus 299 ~~s~~~lr~N-------l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~---~n----~s~ 364 (561)
T COG5354 299 SVSVFDLRGN-------LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG---LN----TSY 364 (561)
T ss_pred ceeecccccc-------eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec---CC----ceE
Confidence 8999999872 3444555666778999999999998876 569999976543222 2211 11 112
Q ss_pred EEEcCCCCEEEEEc------CCCcEEEEcCCcccc
Q 009380 467 AIWGWDDSCVFIGN------MTRTVEVISPAQRRS 495 (536)
Q Consensus 467 ~~~s~~g~~l~~gs------~dg~I~v~d~~~~~~ 495 (536)
+.|+||++++.+.. .|..|.|||+.+...
T Consensus 365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred eeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 67999999988764 367899999977643
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.07 E-value=3.3e-07 Score=88.28 Aligned_cols=176 Identities=14% Similarity=0.098 Sum_probs=136.7
Q ss_pred EEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC-eEEEEECCCCeEEEe
Q 009380 242 FLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG-LIRLMDAEKEVFDLV 320 (536)
Q Consensus 242 ~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg-~I~vwd~~~~~~~~~ 320 (536)
|++. +|++++..|. |...|.+... +. ..-.+|.+.|.-..+.-++ .-++.|..|| .+-|+|.++++...+
T Consensus 327 fa~~-~Gd~ia~VSR-GkaFi~~~~~----~~--~iqv~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~kr~ 397 (668)
T COG4946 327 FAVV-NGDYIALVSR-GKAFIMRPWD----GY--SIQVGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVKRI 397 (668)
T ss_pred hccC-CCcEEEEEec-CcEEEECCCC----Ce--eEEcCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEEEe
Confidence 4444 7889988885 7788877653 22 2234677779888888887 7899999999 999999999999888
Q ss_pred ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC----cEEEEe
Q 009380 321 YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG----TACIWD 396 (536)
Q Consensus 321 ~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg----~i~iwd 396 (536)
...-+.|.++..+++| ..++++.....|.++|+.+++....-+...+-|+.+.|||++ .++|-+--+| .|+++|
T Consensus 398 e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklyd 475 (668)
T COG4946 398 EKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYD 475 (668)
T ss_pred eCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEe
Confidence 8888999999999998 789999999999999999998654444566789999999976 7888776554 689999
Q ss_pred CCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe
Q 009380 397 LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS 433 (536)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s 433 (536)
+..++ ..........=.+-+|.|++++|.--+
T Consensus 476 m~~~K-----iy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 476 MDGGK-----IYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cCCCe-----EEEecCCcccccCcccCCCCcEEEEEe
Confidence 98853 333333333345678899998776554
No 285
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.05 E-value=8.5e-09 Score=95.17 Aligned_cols=249 Identities=12% Similarity=0.117 Sum_probs=164.6
Q ss_pred CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEE-CCCCeEEEeec--CCCceeEEEecCCCCCEEEEEECCCe
Q 009380 272 DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD-AEKEVFDLVYS--SEYAVFSLSQQPNNVNTLYFGEGQGG 348 (536)
Q Consensus 272 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd-~~~~~~~~~~~--~~~~i~~l~~~~~~~~~l~~g~~dg~ 348 (536)
...+..+.+|...|++...-|.. .-+++.+.|.+++||- .+.++.-.... ...+++++.+.+.. ..|++|-.+|+
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngt 91 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGT 91 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCC-CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecce
Confidence 44566788999999988888877 8899999999999995 44454433333 35789999999987 89999999999
Q ss_pred EEEEECC----CCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc
Q 009380 349 LNIWDVR----SRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP 424 (536)
Q Consensus 349 i~i~d~~----~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp 424 (536)
+.-+.+. ....++.+..|...|..+-|+-.. .++++.+.|..+.---.+.+........ ....+.+.|.-
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-----~~~~t~~~~d~ 165 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNF-----ETPASALQFDA 165 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEe-----eccCCCCceee
Confidence 9998664 334466677899999999998754 6888888887765444444321111111 11111111211
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccc-eeccCCc
Q 009380 425 SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSV-ATLQSPY 503 (536)
Q Consensus 425 ~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~-~~l~~~~ 503 (536)
. +...|...|.|.+-.+....+. .+.+.......+.. ..|.+....|++|..|..|.+||+...+-+ ..+.+|+
T Consensus 166 ~--~~fvGd~~gqvt~lr~~~~~~~-~i~~~~~h~~~~~~--l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~ 240 (404)
T KOG1409|consen 166 L--YAFVGDHSGQITMLKLEQNGCQ-LITTFNGHTGEVTC--LKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHN 240 (404)
T ss_pred E--EEEecccccceEEEEEeecCCc-eEEEEcCcccceEE--EEEcCCCcEEEeccccCceEEEeccCCcceeeeeccch
Confidence 1 4455555566555544322222 22222223333444 679999999999999999999999776543 4455555
Q ss_pred eeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 504 ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 504 ~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
..+. .+..-+ -...|.+++.||.|.+|+++
T Consensus 241 ~kV~--~l~~~~-~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 241 DKVQ--ALSYAQ-HTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhh--hhhhhh-hheeeeeccCCCeEEEEecc
Confidence 4443 223322 23789999999999999975
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=3.1e-10 Score=110.31 Aligned_cols=245 Identities=15% Similarity=0.152 Sum_probs=164.6
Q ss_pred CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC-------eEEEe-ecCCCceeEEEecCCCCCEEEEE
Q 009380 272 DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE-------VFDLV-YSSEYAVFSLSQQPNNVNTLYFG 343 (536)
Q Consensus 272 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~-------~~~~~-~~~~~~i~~l~~~~~~~~~l~~g 343 (536)
...+..|.+|...|..+.-..+. +-+++++.|++|++|.++.. .+... ..|..+|.++.|..+. +.+ +
T Consensus 725 ~irL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i--~ 800 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSI--A 800 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-cee--e
Confidence 34566788999999988776665 88999999999999998742 23333 3588999999998875 344 5
Q ss_pred ECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecC-CCCEEEE-EeCCCcEEEEeCCCCCCCCCCcceee---cccCc
Q 009380 344 EGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPR-NPNIMAT-SSTDGTACIWDLRSMATDKPEPMKVL---SHKRA 416 (536)
Q Consensus 344 ~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~-~~~~l~s-~s~dg~i~iwdl~~~~~~~~~~~~~~---~~~~~ 416 (536)
+.||.|.+||.--+..+..+. ...+.+..|...|. ...++.+ ++...+|+++|.|...-.. ..... +....
T Consensus 801 ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~--E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 801 SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTC--ELKVCNAPGPNAL 878 (1034)
T ss_pred eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccccee--eEEeccCCCCchh
Confidence 668899999988777765332 22233344444342 2234444 4778999999999864211 11222 34567
Q ss_pred eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEE-EcCCcccc
Q 009380 417 VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEV-ISPAQRRS 495 (536)
Q Consensus 417 v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v-~d~~~~~~ 495 (536)
+.+++..+.|+.++++-..|+|.+.|.++++.+...+... ..+..+ -.|..+.|+....|.++.| |....+..
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme---cdllql---aapsdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME---CDLLQL---AAPSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc---chhhhh---cCchhHHHHhhcccceeEeeehhcCCee
Confidence 8999999999999999999999999999987665442211 111111 1456678888888899988 98877766
Q ss_pred ceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380 496 VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533 (536)
Q Consensus 496 ~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW 533 (536)
..+.+.+..... +--+ -|.-|+++.....+.||
T Consensus 953 h~q~kpppepah---flqs--vgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 953 HLQDKPPPEPAH---FLQS--VGPSLVTAQNGNILGVY 985 (1034)
T ss_pred eeccCCCCcchh---hhhc--cCceeEEeccCcEEEEE
Confidence 655554332222 1111 24567777776677766
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.00 E-value=5e-09 Score=98.77 Aligned_cols=159 Identities=9% Similarity=0.096 Sum_probs=116.8
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEE---EECCCeEEEEEC
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFT---SCYDGLIRLMDA 312 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s---~s~dg~I~vwd~ 312 (536)
.+..+..+| ++.+||++..+....++++.......+....+. -...-+++.|..+. ..+.. ++....+.+|..
T Consensus 64 a~~~~~~s~--~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 64 APALVLTSD--SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIRED-TSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cccccccCC--CceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeecc-ceEEEEeecCCceeeeeecc
Confidence 345556677 888888888888877887765332112222221 22223444454444 33333 344556666666
Q ss_pred CCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380 313 EKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDGT 391 (536)
Q Consensus 313 ~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~ 391 (536)
..+....+.+|-..++.++|+||+ .+++++..|..|++-.......+..|. +|..-|..++..++ +.|++||.|++
T Consensus 140 ~~~~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~--~~LlS~sGD~t 216 (390)
T KOG3914|consen 140 DSGRCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN--YLLLSGSGDKT 216 (390)
T ss_pred cccCcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC--ceeeecCCCCc
Confidence 668888899999999999999998 899999999999998887666676766 79999999999984 56999999999
Q ss_pred EEEEeCCCCC
Q 009380 392 ACIWDLRSMA 401 (536)
Q Consensus 392 i~iwdl~~~~ 401 (536)
|++||+++++
T Consensus 217 lr~Wd~~sgk 226 (390)
T KOG3914|consen 217 LRLWDITSGK 226 (390)
T ss_pred EEEEecccCC
Confidence 9999999986
No 288
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.00 E-value=5.2e-07 Score=99.51 Aligned_cols=331 Identities=14% Similarity=0.138 Sum_probs=191.5
Q ss_pred cccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeC---CC
Q 009380 182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSK---LG 258 (536)
Q Consensus 182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~---dg 258 (536)
+.+.-..+.|-+||.++|...- ... .+.-..+++|+-...-........+--.+++|-| .|++||+... ..
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~---~~~-~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrP--sG~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSV---EPE-TGSRRVIRVYSREGELQSTSEPVDGLEGALSWRP--SGNLIASSQRLPDRH 281 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEE---EcC-CCceeEEEEECCCceEEeccccCCCccCCccCCC--CCCEEEEEEEcCCCc
Confidence 5566778899999999995411 000 0123588999864322222233344456789999 9999998765 34
Q ss_pred cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE----EEeecCCCceeEEEecC
Q 009380 259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF----DLVYSSEYAVFSLSQQP 334 (536)
Q Consensus 259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~----~~~~~~~~~i~~l~~~~ 334 (536)
.|.+|.-... ..+.....+......|..+.|++++ ..|+..-.|. |.+|-..+-.. ...+.....+..+.|+|
T Consensus 282 ~VvFfErNGL-rhgeF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 282 DVVFFERNGL-RHGEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP 358 (928)
T ss_pred EEEEEecCCc-EeeeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence 6777765421 1122222223456789999999998 8888877665 99999887532 33344455566799999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc
Q 009380 335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK 414 (536)
Q Consensus 335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~ 414 (536)
..+..|.+.+.+|.+..+++.-.- . +.. ...|++.-.+++-. ...+.+-.++......+.........
T Consensus 359 e~p~~L~v~t~~g~~~~~~~~~~v-----~-~s~-----~~~~~D~g~vaVID-G~~lllTpf~~a~VPPPMs~~~l~~~ 426 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQYEIYDFAWDV-----S-RSP-----GSSPNDNGTVAVID-GNKLLLTPFRRAVVPPPMSSYELELP 426 (928)
T ss_pred CCCCEEEEEecCCcEEEEEEEEEE-----E-ecC-----CCCccCceEEEEEe-CCeEEEecccccCCCchHhceEEcCC
Confidence 998999999998888877753110 0 000 01121212333332 23577777776542222333444677
Q ss_pred CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc--------eEEecc-----CCCCceeeeeEEEEcCCCCEEEEEcC
Q 009380 415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--------SMIHHN-----NQTGRWISSFRAIWGWDDSCVFIGNM 481 (536)
Q Consensus 415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~--------~~~~~~-----~~~~~~~~~~~~~~s~~g~~l~~gs~ 481 (536)
..|.+++|++++..+++-..||.|.+|........ ..+... ...........++|..+..+++....
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDS 506 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEec
Confidence 89999999999888999999999999985432211 111110 00001112223566666666555544
Q ss_pred C---CcEEEEcCCccccceeccC-CceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 482 T---RTVEVISPAQRRSVATLQS-PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 482 d---g~I~v~d~~~~~~~~~l~~-~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
+ ..+.+++.........+.. .........+...+.. ..++.-..||.|...+
T Consensus 507 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~G~v~~~~ 562 (928)
T PF04762_consen 507 DSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDS-GSLYIQTNDGKVFQLS 562 (928)
T ss_pred CcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCC-cEEEEEECCCEEEEee
Confidence 3 5677887743322111111 1111121233444322 3366666788877544
No 289
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5.4e-08 Score=91.77 Aligned_cols=257 Identities=14% Similarity=0.083 Sum_probs=152.5
Q ss_pred CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEE
Q 009380 272 DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNI 351 (536)
Q Consensus 272 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i 351 (536)
.+....+.+|...|..++|+|....++..++.+..|.|.|+++......+.....+++++|.-+..++|++|..+|.|.+
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEE
Confidence 34444667788899999999998558999999999999999999888888777999999999999899999999999999
Q ss_pred EECCCCcc-ceeEec--cCCCeEEEEEec------CCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEE
Q 009380 352 WDVRSRKS-ATEWLL--HEARINTIDFNP------RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYF 422 (536)
Q Consensus 352 ~d~~~~~~-~~~~~~--h~~~i~~i~~~p------~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~ 422 (536)
||++..+. +..+.+ ...+|..|+.-+ .+ -+++..+.+ +..|.+..... ...+....+..+.+.++.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~s~~-~~p~vlele~pG~cismqy 338 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVFSAE-CLPCVLELEPPGICISMQY 338 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhcccc-CCCcccccCCCcceeeeee
Confidence 99997643 222221 233444443332 23 244444433 66777654321 1122222344566667777
Q ss_pred ccCCCeEEEEeCC-C------cEEE-EeCCCCCcceEEecc--CCCCceeeeeEEEE-cCCCCEEE-EEcCCCcEEEEcC
Q 009380 423 SPSGSSLATTSFD-D------TIGI-WSGVNFENTSMIHHN--NQTGRWISSFRAIW-GWDDSCVF-IGNMTRTVEVISP 490 (536)
Q Consensus 423 sp~g~~l~t~s~d-g------~I~i-wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~-s~~g~~l~-~gs~dg~I~v~d~ 490 (536)
++..+.++..-.. - .|-. -|..++.++...+.. ......+..-.+.+ .++..+|+ .|...+.+.+||.
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~ 418 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP 418 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence 7744444443322 1 0111 111223222222110 00000111111222 34555544 4555588999999
Q ss_pred CccccceeccCCceeeeeeeEee-cCCCCCEEEEEccCCeEEEEecC
Q 009380 491 AQRRSVATLQSPYISAIPCRFHA-HPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 491 ~~~~~~~~l~~~~~~~~~~~~~~-~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
.+++.++++... ..+ ..+.. +-+.+.+|+.-++ ..++||..+
T Consensus 419 ~s~evvQ~l~~~--epv-~Dicp~~~n~~syLa~LTd-~~v~Iyk~e 461 (463)
T KOG1645|consen 419 HSFEVVQTLALS--EPV-LDICPNDTNGSSYLALLTD-DRVHIYKNE 461 (463)
T ss_pred chhheeeecccC--cce-eecceeecCCcchhhheec-ceEEEEecC
Confidence 999999988754 222 22222 2223356666665 578887643
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=6.1e-07 Score=90.90 Aligned_cols=194 Identities=11% Similarity=0.031 Sum_probs=119.7
Q ss_pred CceEEEEEEecCCccE-EEEEeCC---CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC--CeEE
Q 009380 235 GRITQMKFLPCSDVRM-VVAGSKL---GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD--GLIR 308 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~-l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d--g~I~ 308 (536)
+.+....|+| ||+. ++..+.+ ..|.++|+.++ .. ..+....+......|+|||..++++.+.+ ..|.
T Consensus 188 ~~~~~p~wSp--DG~~~i~y~s~~~~~~~Iyv~dl~tg----~~-~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 188 GLNIFPKWAN--KEQTAFYYTSYGERKPTLYKYNLYTG----KK-EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred CCeEeEEECC--CCCcEEEEEEccCCCCEEEEEECCCC----cE-EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEE
Confidence 4778899999 8874 5544333 46888898763 22 22223455566788999994444555444 5688
Q ss_pred EEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC--eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380 309 LMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG--GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386 (536)
Q Consensus 309 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~ 386 (536)
++|+.++....+..+........|+|+|..++++....| .|.++|+.+++..+... .... ...|+|+|..++++.
T Consensus 261 ~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 261 LYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSS 337 (419)
T ss_pred EEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEE
Confidence 889888877666555444456689999944444443333 68888888776533222 1111 248999996555555
Q ss_pred eCC--------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC---cEEEEeCC
Q 009380 387 STD--------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD---TIGIWSGV 444 (536)
Q Consensus 387 s~d--------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg---~I~iwd~~ 444 (536)
... ..|.+.|+.++. ...+... .......|+|||+.|+..+.++ .|.+.++.
T Consensus 338 ~~~~~~~~~~~~~I~v~d~~~g~-----~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 338 RETNNEFGKNTFNLYLISTNSDY-----IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred cCCCcccCCCCcEEEEEECCCCC-----eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 433 367888887753 1222222 2334688999999877765432 25556654
No 291
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=7.2e-08 Score=97.89 Aligned_cols=248 Identities=11% Similarity=0.093 Sum_probs=172.6
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC-----------CCEEEEEE
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC-----------LSKIFTSC 302 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-----------~~~l~s~s 302 (536)
...-.++.|+| .| +||.|+. ..|.+-|..+ .+.+..+..|...|+.+.|.|-. .-.|+++.
T Consensus 15 ~sN~~A~Dw~~--~G-LiAygsh-slV~VVDs~s----~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD 86 (1062)
T KOG1912|consen 15 RSNRNAADWSP--SG-LIAYGSH-SLVSVVDSRS----LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD 86 (1062)
T ss_pred cccccccccCc--cc-eEEEecC-ceEEEEehhh----hhhhhccccCccceeEEEeccCCCchhccCccccceeEEecc
Confidence 33467889998 54 7777775 4788888877 77888899999999999998742 12567778
Q ss_pred CCCeEEEEECCCCeEEEe-ecCCCceeEEEecCCC---CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecC
Q 009380 303 YDGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNN---VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPR 378 (536)
Q Consensus 303 ~dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~---~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~ 378 (536)
..|.|.+||...+..+.. ..+..++..++|-+.. ..+|++-....+|.+|+..+|+.............|+.+.|-
T Consensus 87 ~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPf 166 (1062)
T KOG1912|consen 87 ISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPF 166 (1062)
T ss_pred ccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCC
Confidence 889999999988765544 4567889999997642 246777777789999999999988887766677788999997
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCC--Ccceee-cccC-------------------------ceeEEEEccCCCeEE
Q 009380 379 NPNIMATSSTDGTACIWDLRSMATDKP--EPMKVL-SHKR-------------------------AVHSAYFSPSGSSLA 430 (536)
Q Consensus 379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~--~~~~~~-~~~~-------------------------~v~~l~~sp~g~~l~ 430 (536)
+...|..-+..|.+.+.+.-..+.... ..+.+. .|.. ....++|+|.-+.++
T Consensus 167 d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 167 DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 777777777788888777544321110 111111 1211 012356788766666
Q ss_pred EEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380 431 TTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 431 t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~ 492 (536)
.......+.|+|+.-..++..+.........+. +.-.|....|+++-.||.+.+|-...
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~~akfv~---vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERGGAKFVD---VLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccCCcceeE---eccCCCcceEEEEecCCeEEEEEeec
Confidence 667778899999987777766654433222222 22234455799999999999997654
No 292
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=1.7e-07 Score=94.43 Aligned_cols=229 Identities=12% Similarity=0.090 Sum_probs=155.8
Q ss_pred ceeeeecCCCCcccccccccccccccccccceEEeccccc----------------CccccccccCCceEEEEEEecCCc
Q 009380 185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL----------------KPENIARIMPGRITQMKFLPCSDV 248 (536)
Q Consensus 185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~----------------~~~~~~~~~~~~I~~v~~~p~~~~ 248 (536)
...|+.+.....+++. ++.||.+++-.+.. .-++.+.+|.+.|.-+.|+. ..
T Consensus 16 kL~c~~WNke~gyIAc----------gG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe--~~ 83 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIAC----------GGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE--NN 83 (1189)
T ss_pred eEEEEEEcccCCeEEe----------ccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc--cc
Confidence 4567777777777763 34444444443311 12345678999999999998 77
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCcee
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF 328 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~ 328 (536)
..|-+.+.+|.|.||-+..+.. -.-..-......|.+++|+.+| ..++..-.||.|.|-.++...+--..-......
T Consensus 84 QKLTtSDt~GlIiVWmlykgsW--~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~ 160 (1189)
T KOG2041|consen 84 QKLTTSDTSGLIIVWMLYKGSW--CEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELKGQLLA 160 (1189)
T ss_pred ccccccCCCceEEEEeeecccH--HHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcchhecc
Confidence 8899999999999999986431 1111222345678999999999 999999999999998887654321111123345
Q ss_pred EEEecCCCCCEEEEEECCCeEEEEECCCCc-------cce----eEeccCCCeEEEEEe--------cCCCCEEEEEeCC
Q 009380 329 SLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-------SAT----EWLLHEARINTIDFN--------PRNPNIMATSSTD 389 (536)
Q Consensus 329 ~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-------~~~----~~~~h~~~i~~i~~~--------p~~~~~l~s~s~d 389 (536)
.+.|+++. ..++.+-.+|.+.+||....- +.- .+......|..++|. |+. -.|+.+-.+
T Consensus 161 hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~n 238 (1189)
T KOG2041|consen 161 HVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYAN 238 (1189)
T ss_pred ceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC-CEEEEEEcC
Confidence 78899998 678888889999999975321 101 111233447777775 344 378888889
Q ss_pred CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC
Q 009380 390 GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD 435 (536)
Q Consensus 390 g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d 435 (536)
|.+.|-.-.+. +.+. +......+..+.|+++|..|++++.+
T Consensus 239 Gr~QiMR~eND----~~Pv-v~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 239 GRMQIMRSEND----PEPV-VVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ceehhhhhcCC----CCCe-EEecccEeecceecCCCcEEEEccCc
Confidence 98888644332 2222 23344788999999999999999864
No 293
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.90 E-value=6.7e-07 Score=90.73 Aligned_cols=264 Identities=9% Similarity=0.020 Sum_probs=154.8
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC----------CCEE-EEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL----------GPIS-GIVTQQYCLSKIFTSCYDGLIRLMDAEKE 315 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~----------~~V~-~l~~~~~~~~~l~s~s~dg~I~vwd~~~~ 315 (536)
.+..|++++.+|.|.-+|..+ ++.+....... ..+. .+.. .+ ..++.++.+|.+..+|.+++
T Consensus 68 ~~~~vy~~~~~g~l~ald~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~-~~v~v~~~~g~l~ald~~tG 140 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADT----GKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AG-GKVYIGSEKGQVYALNAEDG 140 (394)
T ss_pred ECCEEEEECCCCeEEEEECCC----CcEeeEEcCCCcccccccccccccccccEE--EC-CEEEEEcCCCEEEEEECCCC
Confidence 345677777788888888876 33333322111 0010 1111 23 67888889999999999999
Q ss_pred eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCe-----EEEEEecCCCCEEEEEeCCC
Q 009380 316 VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARI-----NTIDFNPRNPNIMATSSTDG 390 (536)
Q Consensus 316 ~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i-----~~i~~~p~~~~~l~s~s~dg 390 (536)
+..........+.+--...+ ..+++++.+|.|..+|..+|+.+..+......+ .+-... + ..++.++.+|
T Consensus 141 ~~~W~~~~~~~~~ssP~v~~--~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~-~~v~~~~~~g 215 (394)
T PRK11138 141 EVAWQTKVAGEALSRPVVSD--GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--F-GGAIVGGDNG 215 (394)
T ss_pred CCcccccCCCceecCCEEEC--CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--C-CEEEEEcCCC
Confidence 87666554444332111112 478888889999999999999877665321110 111111 2 2466677789
Q ss_pred cEEEEeCCCCCCCCCCcceee--ccc-CceeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee
Q 009380 391 TACIWDLRSMATDKPEPMKVL--SHK-RAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF 465 (536)
Q Consensus 391 ~i~iwdl~~~~~~~~~~~~~~--~~~-~~v~~l~~sp--~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 465 (536)
.+..+|..+++.......... .+. .....+..+| .+..+++++.+|.+..+|..+++.+........ ..
T Consensus 216 ~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~----~~-- 289 (394)
T PRK11138 216 RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV----ND-- 289 (394)
T ss_pred EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc----cC--
Confidence 999999888752111100000 000 0011122233 355677788899999999999876655432111 01
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 466 RAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 466 ~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
+ ...+..|++++.++.+..+|..+++.+........... ..... .+..|+.++.||.|++.|.
T Consensus 290 -~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~-~sp~v---~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 290 -F--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLL-TAPVL---YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred -c--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcc-cCCEE---ECCEEEEEeCCCEEEEEEC
Confidence 1 12456788888999999999999987665432111111 11111 1367888889999888775
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.90 E-value=4e-08 Score=89.53 Aligned_cols=245 Identities=16% Similarity=0.216 Sum_probs=163.2
Q ss_pred cccceeeeecCCCCcccccccccccccccccccceEEecccccCc-c-----cccccc------------CCceEEEEEE
Q 009380 182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-E-----NIARIM------------PGRITQMKFL 243 (536)
Q Consensus 182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~-----~~~~~~------------~~~I~~v~~~ 243 (536)
..+.|.++.|...|.++++. ...|.|.++.-.... . .-.+.| ...|..+.|.
T Consensus 25 ead~ItaVefd~tg~YlatG----------DkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~ 94 (460)
T COG5170 25 EADKITAVEFDETGLYLATG----------DKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWF 94 (460)
T ss_pred ccceeeEEEeccccceEeec----------CCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeee
Confidence 45778899999999999944 555677777532111 0 012333 4578999998
Q ss_pred ecCCccEEEEEeCCCcEEEEECCCCCC----------------C-----------------CCce-----EEe-ccCCCC
Q 009380 244 PCSDVRMVVAGSKLGNITFWNLDSQQD----------------E-----------------DNGI-----YLF-RTHLGP 284 (536)
Q Consensus 244 p~~~~~~l~tg~~dg~v~iwd~~~~~~----------------~-----------------~~~~-----~~~-~~h~~~ 284 (536)
.......++..+.|.+|++|.+..... . ...+ +.+ ..|.-.
T Consensus 95 ~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh 174 (460)
T COG5170 95 DDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH 174 (460)
T ss_pred cCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence 744445677778899999999864300 0 0000 111 357777
Q ss_pred EEEEEEecCCCCEEEEEECCCeEEEEECCC--CeE--EEeecC-----CCceeEEEecCCCCCEEEEEECCCeEEEEECC
Q 009380 285 ISGIVTQQYCLSKIFTSCYDGLIRLMDAEK--EVF--DLVYSS-----EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR 355 (536)
Q Consensus 285 V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~--~~~--~~~~~~-----~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~ 355 (536)
|.++.|+.+. ..++++. |=.|.+|+++- +.+ ..+..| ..-|++..|+|...+.+.-.+..|.|++-|+|
T Consensus 175 iNSiS~NsD~-et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 175 INSISFNSDK-ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eeeeeecCch-heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 9999999986 6666664 77899999874 322 222233 24688999999887888888999999999999
Q ss_pred CCcc------cee----------EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-cc-----
Q 009380 356 SRKS------ATE----------WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SH----- 413 (536)
Q Consensus 356 ~~~~------~~~----------~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~----- 413 (536)
.... +.. +.+-...|..+.|++.| .++++-+. -+|+|||++..+ .++... -|
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k----~pikTi~~h~~l~~ 326 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAK----NPIKTIPMHCDLMD 326 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEeccccc----CCceeechHHHHHH
Confidence 4321 111 11223568899999976 67777664 589999999854 232222 22
Q ss_pred -------cCce---eEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380 414 -------KRAV---HSAYFSPSGSSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 414 -------~~~v---~~l~~sp~g~~l~t~s~dg~I~iwd~~ 444 (536)
...| ..+.|+.+.+.+++|++.+..-+|-..
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 1222 357888888999999998888887643
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=4.4e-09 Score=97.08 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=122.3
Q ss_pred EEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC-----ccceeE
Q 009380 289 VTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR-----KSATEW 363 (536)
Q Consensus 289 ~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~-----~~~~~~ 363 (536)
+|+-+-..+=++.+.+..|-+-|++++....+. ..+.|.++.|...+ ++++.|+.+|.|..+|+|.+ .+...+
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence 555332123366677888889999988665444 77889999999877 89999999999999999975 334444
Q ss_pred eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEE--EccCCCeEEEEeCCCcEEEE
Q 009380 364 LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAY--FSPSGSSLATTSFDDTIGIW 441 (536)
Q Consensus 364 ~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~--~sp~g~~l~t~s~dg~I~iw 441 (536)
. |...|+++.......++|++.+.+|.|++||+|..++.. .+....+|-..-.-+- ..+....+++++.|...+||
T Consensus 296 y-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~-~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 296 Y-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK-SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred E-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc-ceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 4 999999998877444789999999999999999876432 3445556654433333 34455678889999999999
Q ss_pred eCCCCCcceEEeccC
Q 009380 442 SGVNFENTSMIHHNN 456 (536)
Q Consensus 442 d~~~~~~~~~~~~~~ 456 (536)
.++.+..+.+++...
T Consensus 374 sl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 374 SLDSGHLLCTIPFPY 388 (425)
T ss_pred ecccCceeeccCCCC
Confidence 999998888775443
No 296
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=5e-09 Score=96.68 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=121.6
Q ss_pred EEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEE
Q 009380 341 YFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSA 420 (536)
Q Consensus 341 ~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l 420 (536)
++.+.+-.|.+-|+.++... .|. ..+.|.++.|+..+ +++..|+.+|.|..+|+|........+.....|...|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence 44555668999999887532 333 67789999999866 6999999999999999998765556777788899999999
Q ss_pred EEcc-CCCeEEEEeCCCcEEEEeCCCCCc---ceEEe-ccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380 421 YFSP-SGSSLATTSFDDTIGIWSGVNFEN---TSMIH-HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS 495 (536)
Q Consensus 421 ~~sp-~g~~l~t~s~dg~I~iwd~~~~~~---~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~ 495 (536)
..-. ++++|++.+.+|+|++||++-.++ +..+. |.+... .+-+...+....+++++.|...+||.+..+..
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a----~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA----YLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc----ccccccccccceEEEccCeeEEEEEecccCce
Confidence 8877 788999999999999999987666 44442 333222 22244567777899999999999999999999
Q ss_pred ceeccCC
Q 009380 496 VATLQSP 502 (536)
Q Consensus 496 ~~~l~~~ 502 (536)
+.+++..
T Consensus 381 l~tipf~ 387 (425)
T KOG2695|consen 381 LCTIPFP 387 (425)
T ss_pred eeccCCC
Confidence 8888754
No 297
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.88 E-value=4.9e-08 Score=100.84 Aligned_cols=183 Identities=18% Similarity=0.190 Sum_probs=136.4
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEeecCC-CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEE
Q 009380 295 LSKIFTSCYDGLIRLMDAEKEVFDLVYSSE-YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTI 373 (536)
Q Consensus 295 ~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~-~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i 373 (536)
+..++-|+....+..+|+++.+........ ..|.-|+.+ + +.+++|...|+|.+-|.++.+.++++..|.+.|..+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEec--C-cEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 467788888888889999998777666543 356666654 3 689999999999999999999999999999999998
Q ss_pred EEecCCCCEEEEEeC---------CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC-CCeEEEEeCCCcEEEEeC
Q 009380 374 DFNPRNPNIMATSST---------DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSG 443 (536)
Q Consensus 374 ~~~p~~~~~l~s~s~---------dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~t~s~dg~I~iwd~ 443 (536)
..+ | +.|++|+. |..|+|||+|..... ..+.-+. ...-+.|+|. ...+++++..|...+-|.
T Consensus 224 Dv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral----~PI~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 224 DVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL----SPIQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred ecc--C-CeEEEeecccccccccccchhhhhhhhhhhcc----CCccccc-CchhhhhcccccceEEEEecccceeeccc
Confidence 886 4 78888875 567899999997522 2221122 2256788884 356888889999999995
Q ss_pred CCCC-cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380 444 VNFE-NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 444 ~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
.+.. +.....+.++.+..+.. ..+|++++.++.|..+|.|.+|.-
T Consensus 296 ~~lsNP~~~~~~v~p~~s~i~~--fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 296 ATLSNPPAGVKMVNPNGSGISA--FDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccCCCccceeEEccCCCccee--EEecCCCceEEEecccCcEeeecC
Confidence 4433 22333333444444454 557999999999999999999973
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.88 E-value=1.8e-06 Score=87.60 Aligned_cols=262 Identities=13% Similarity=0.128 Sum_probs=157.2
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCc
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYA 326 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~ 326 (536)
++..++.++.+|.+..+|..+ ++.+................ + ..++.++.++.|..+|..+++....+....+
T Consensus 119 ~~~~v~v~~~~g~l~ald~~t----G~~~W~~~~~~~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAED----GEVAWQTKVAGEALSRPVVS--D-GLVLVHTSNGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCC----CCCcccccCCCceecCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeecCCCC
Confidence 345677788899999999987 44444443322111111121 3 5777888899999999999987765543322
Q ss_pred eeEEE--ecC--CCCCEEEEEECCCeEEEEECCCCccceeEeccCC-------CeEEEEEec--CCCCEEEEEeCCCcEE
Q 009380 327 VFSLS--QQP--NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA-------RINTIDFNP--RNPNIMATSSTDGTAC 393 (536)
Q Consensus 327 i~~l~--~~~--~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~-------~i~~i~~~p--~~~~~l~s~s~dg~i~ 393 (536)
...+. -+| .+ ..+++++.+|.+..+|..+++.+........ ....+..+| .+ ..++.++.+|.+.
T Consensus 192 ~~~~~~~~sP~v~~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ 269 (394)
T PRK11138 192 SLTLRGESAPATAF-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLV 269 (394)
T ss_pred cccccCCCCCEEEC-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEE
Confidence 11100 011 12 3677888899999999999987655431110 011111122 13 3566677799999
Q ss_pred EEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCC
Q 009380 394 IWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDD 473 (536)
Q Consensus 394 iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 473 (536)
.+|+.+++. .-.. .. .....+.. .+..|+.++.+|.+..+|..+++.+...... ....... ... .+
T Consensus 270 ald~~tG~~----~W~~-~~-~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~s--p~v--~~ 335 (394)
T PRK11138 270 ALDLRSGQI----VWKR-EY-GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDL--LHRLLTA--PVL--YN 335 (394)
T ss_pred EEECCCCCE----EEee-cC-CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEccccc--CCCcccC--CEE--EC
Confidence 999998742 1111 11 11111222 4667888889999999999888765433211 1111111 111 24
Q ss_pred CEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 474 SCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 474 ~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
.+|++++.+|.|.++|..+|+.+.+......... ..-... ++.|+.++.||.|+.+++
T Consensus 336 g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~-s~P~~~---~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 336 GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFL-SEPVVA---DDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcce-eCCEEE---CCEEEEEeCCceEEEEeC
Confidence 5788899999999999999998877654222111 111111 368999999999998864
No 299
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.86 E-value=7.4e-07 Score=85.89 Aligned_cols=248 Identities=13% Similarity=0.069 Sum_probs=157.7
Q ss_pred ccceEEecccccCccccccccCC--ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceE--Ee-----ccCCC
Q 009380 213 VGSCVDIGSLTLKPENIARIMPG--RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIY--LF-----RTHLG 283 (536)
Q Consensus 213 ~dg~v~lw~~~~~~~~~~~~~~~--~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~--~~-----~~h~~ 283 (536)
.+|.=.||..+++.... +-|++ .-++=-.+ .||+.|+.. .-|.|.+||..+...+.-.+- .. .....
T Consensus 244 ~eG~GnlYSvdldGkDl-rrHTnFtdYY~R~~n--sDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~ 319 (668)
T COG4946 244 HEGVGNLYSVDLDGKDL-RRHTNFTDYYPRNAN--SDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVN 319 (668)
T ss_pred ccCccceEEeccCCchh-hhcCCchhccccccC--CCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccC
Confidence 34444555555554443 33322 11222222 388777654 458899999887432110000 00 00111
Q ss_pred CEEEEE-EecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC-eEEEEECCCCccce
Q 009380 284 PISGIV-TQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG-GLNIWDVRSRKSAT 361 (536)
Q Consensus 284 ~V~~l~-~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg-~i~i~d~~~~~~~~ 361 (536)
+..-+. |++..+++++..|. |...+.+...+-.. ..++.+.|.-..+..++ +-++.|..|| .|.|||.++++ +.
T Consensus 320 pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~i-qv~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e-~k 395 (668)
T COG4946 320 PSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSI-QVGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGE-VK 395 (668)
T ss_pred HHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeE-EcCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCce-EE
Confidence 122222 45544488888874 55667666555443 34566678888888776 5889999998 89999998876 45
Q ss_pred eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC----c
Q 009380 362 EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD----T 437 (536)
Q Consensus 362 ~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg----~ 437 (536)
.+...-+.|.++..+|+| .+++.+.....|-+.|+.+++ ....-....+-|+.+.|+|++++||-+--+| .
T Consensus 396 r~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngn----v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~ 470 (668)
T COG4946 396 RIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGN----VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQS 470 (668)
T ss_pred EeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCC----eeEecccccceeEEEEEcCCceeEEEecCcceeeee
Confidence 556677899999999988 678888878889999999974 2222334567899999999999999876655 5
Q ss_pred EEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE
Q 009380 438 IGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG 479 (536)
Q Consensus 438 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g 479 (536)
|++||+.+++..... .++. .-+..+|.|++++|.--
T Consensus 471 Iklydm~~~Kiy~vT---T~ta---~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 471 IKLYDMDGGKIYDVT---TPTA---YDFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEEEecCCCeEEEec---CCcc---cccCcccCCCCcEEEEE
Confidence 999999876544322 1221 23447788888876543
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.85 E-value=1.4e-06 Score=81.78 Aligned_cols=220 Identities=11% Similarity=0.097 Sum_probs=136.0
Q ss_pred CCcEEEEECCCCCCCCCceEEeccC--CCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380 257 LGNITFWNLDSQQDEDNGIYLFRTH--LGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQP 334 (536)
Q Consensus 257 dg~v~iwd~~~~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~ 334 (536)
+|+|..||..+ +..+.....- .....+. ..+++ ..+++++.++.|..||..+|+....+.....+...-...
T Consensus 2 ~g~l~~~d~~t----G~~~W~~~~~~~~~~~~~~-~~~~~-~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRT----GKELWSYDLGPGIGGPVAT-AVPDG-GRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVD 75 (238)
T ss_dssp TSEEEEEETTT----TEEEEEEECSSSCSSEEET-EEEET-TEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEE
T ss_pred CCEEEEEECCC----CCEEEEEECCCCCCCccce-EEEeC-CEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeec
Confidence 67888899876 5566555431 1222222 23344 788888999999999999998776665544433322222
Q ss_pred CCCCEEEEEECCCeEEEEECCCCccceeE-eccC---CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee
Q 009380 335 NNVNTLYFGEGQGGLNIWDVRSRKSATEW-LLHE---ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV 410 (536)
Q Consensus 335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~h~---~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~ 410 (536)
+ ..+++++.++.|..+|..+|+.+... .... ...........+ ..++.+..++.|..+|+++++ .....
T Consensus 76 -~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~----~~w~~ 148 (238)
T PF13360_consen 76 -G-GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGK----LLWKY 148 (238)
T ss_dssp -T-TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTE----EEEEE
T ss_pred -c-cccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecCCCc----EEEEe
Confidence 2 47788888899999999999998774 3221 111222222224 577778779999999999875 22222
Q ss_pred ecccC----------ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc
Q 009380 411 LSHKR----------AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN 480 (536)
Q Consensus 411 ~~~~~----------~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs 480 (536)
..... .+..-....++ .++.++.++.+..+|+.+++...... ... .. .....++..|++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~---~~~--~~---~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP---ISG--IY---SLPSVDGGTLYVTS 219 (238)
T ss_dssp ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC---SS---EC---ECEECCCTEEEEEE
T ss_pred ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec---CCC--cc---CCceeeCCEEEEEe
Confidence 22111 11222222244 77777778864444999888553221 111 11 11346778888888
Q ss_pred CCCcEEEEcCCcccccee
Q 009380 481 MTRTVEVISPAQRRSVAT 498 (536)
Q Consensus 481 ~dg~I~v~d~~~~~~~~~ 498 (536)
.++.|..||+.+++.+.+
T Consensus 220 ~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 220 SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCCCCEEeE
Confidence 999999999999987643
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.85 E-value=9.1e-06 Score=76.69 Aligned_cols=223 Identities=13% Similarity=0.100 Sum_probs=141.3
Q ss_pred EEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE
Q 009380 239 QMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD 318 (536)
Q Consensus 239 ~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~ 318 (536)
++.|.+. ++.++++--..+.|..|+..+ .....+.... ...+.+...+ ..|+.+..++ +.++|+.+++..
T Consensus 4 gp~~d~~-~g~l~~~D~~~~~i~~~~~~~-----~~~~~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPR-DGRLYWVDIPGGRIYRVDPDT-----GEVEVIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTT-----TEEEEEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEE
T ss_pred ceEEECC-CCEEEEEEcCCCEEEEEECCC-----CeEEEEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEE
Confidence 4677763 566777777789999999986 2232232222 6777887333 5666666555 556699988765
Q ss_pred EeecC------CCceeEEEecCCCCCEEEEEECC--------CeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEE
Q 009380 319 LVYSS------EYAVFSLSQQPNNVNTLYFGEGQ--------GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMA 384 (536)
Q Consensus 319 ~~~~~------~~~i~~l~~~~~~~~~l~~g~~d--------g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~ 384 (536)
.+... ....+.+++.++| ++.++.... |.|..++.. ++. ..+...-...+.|+|+|++..+++
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTSSEEEE
T ss_pred EEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcchheee
Confidence 55432 3567899999998 555554433 568888877 443 333334566799999999865666
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCcceee---cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCce
Q 009380 385 TSSTDGTACIWDLRSMATDKPEPMKVL---SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRW 461 (536)
Q Consensus 385 s~s~dg~i~iwdl~~~~~~~~~~~~~~---~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 461 (536)
+-+..+.|..|++............+. ...+..-.++++.+|++.++....+.|.++|.. ++.+..+.... . .
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--~-~ 226 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--P-R 226 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--S-S
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--C-C
Confidence 777888999999875321000111111 112247889999999988887788999999987 77776665431 1 2
Q ss_pred eeeeEEEE-cCCCCEEEEEc
Q 009380 462 ISSFRAIW-GWDDSCVFIGN 480 (536)
Q Consensus 462 ~~~~~~~~-s~~g~~l~~gs 480 (536)
.+. ++| .++.+.|++.+
T Consensus 227 ~t~--~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 227 PTN--CAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEE--EEEESTTSSEEEEEE
T ss_pred EEE--EEEECCCCCEEEEEe
Confidence 333 667 46666665543
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.85 E-value=7.3e-06 Score=77.37 Aligned_cols=211 Identities=15% Similarity=0.107 Sum_probs=134.6
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec-
Q 009380 287 GIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL- 365 (536)
Q Consensus 287 ~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~- 365 (536)
++.|.+....++++--..+.|..|+..++......... ...+++...+ ..|+++... .+.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence 57898844266666667899999999998765543333 7777777333 466777665 556669988865433332
Q ss_pred ----cCCCeEEEEEecCCCCEEEEEeCC--------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEE-EE
Q 009380 366 ----HEARINTIDFNPRNPNIMATSSTD--------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLA-TT 432 (536)
Q Consensus 366 ----h~~~i~~i~~~p~~~~~l~s~s~d--------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~-t~ 432 (536)
.....+.+++.|+| ++.++.... |.|..++.. + ........-...+.|+|+|+++.|+ +-
T Consensus 80 ~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~-----~~~~~~~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-G-----KVTVVADGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S-----EEEEEEEEESSEEEEEEETTSSEEEEEE
T ss_pred CCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-C-----eEEEEecCcccccceEECCcchheeecc
Confidence 33567899999988 566665543 457777766 2 2333334456678999999998765 55
Q ss_pred eCCCcEEEEeCCCCCc----ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeee
Q 009380 433 SFDDTIGIWSGVNFEN----TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIP 508 (536)
Q Consensus 433 s~dg~I~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~ 508 (536)
+..+.|..|++..... ...+..........-- ++++.+|++.++....+.|.+++.. |+.+..+.......
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG--~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~-- 227 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDG--LAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRP-- 227 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEE--EEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSE--
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcCCCc--ceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCE--
Confidence 6778899999864332 1222111111111222 5678899888887788999999988 77877777653333
Q ss_pred eeEee
Q 009380 509 CRFHA 513 (536)
Q Consensus 509 ~~~~~ 513 (536)
+.++|
T Consensus 228 t~~~f 232 (246)
T PF08450_consen 228 TNCAF 232 (246)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44555
No 303
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=2.1e-09 Score=109.99 Aligned_cols=223 Identities=16% Similarity=0.201 Sum_probs=154.7
Q ss_pred cCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC
Q 009380 224 LKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY 303 (536)
Q Consensus 224 ~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~ 303 (536)
+.+-..++-|....+|++|+- +.+.|+.|+..|.|++|++.+ +.....+.+|..+|+-+.-+.+|..+|.+++.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~--~~~hL~vG~~~Geik~~nv~s----G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG--GTNHLAVGSHAGEIKIFNVSS----GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred cccchhhhccccceeeEEeec--CCceEEeeeccceEEEEEccC----ccccccccccccccccccccCCcceeeeeccc
Confidence 344455677788999999999 889999999999999999998 67777889999999999999999444444444
Q ss_pred CC-eEEEEECCC-CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe----ccCCCeEEEEEec
Q 009380 304 DG-LIRLMDAEK-EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL----LHEARINTIDFNP 377 (536)
Q Consensus 304 dg-~I~vwd~~~-~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~----~h~~~i~~i~~~p 377 (536)
.. -..+|++.. +.....+ ..-.++.|+... ..-+.|+......+||+.++..+.++- +....-++..|+|
T Consensus 1165 S~PlsaLW~~~s~~~~~Hsf---~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGPRHSF---DEDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred cCchHHHhccccccCccccc---cccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 44 567899865 2222222 234566777654 445556666689999999998876632 2223347889999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC
Q 009380 378 RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ 457 (536)
Q Consensus 378 ~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~ 457 (536)
++. +++ .|| .+||+|..+ .+..+.... .--.-.|+|+|..++.-+ .|||+++++.++.++.-++
T Consensus 1241 ~D~-LIl---ndG--vLWDvR~~~----aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ldq 1304 (1516)
T KOG1832|consen 1241 CDT-LIL---NDG--VLWDVRIPE----AIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLDQ 1304 (1516)
T ss_pred Ccc-eEe---eCc--eeeeeccHH----HHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHHhcCccccc
Confidence 873 443 466 589999842 333332222 222346999999888765 4999999888776643322
Q ss_pred CCceeeeeEEEEcCCCCEEEEE
Q 009380 458 TGRWISSFRAIWGWDDSCVFIG 479 (536)
Q Consensus 458 ~~~~~~~~~~~~s~~g~~l~~g 479 (536)
.++.|+..|..++..
T Consensus 1305 -------c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1305 -------CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred -------eEEEeccCccchhhh
Confidence 235677777665443
No 304
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=2.6e-07 Score=93.92 Aligned_cols=246 Identities=10% Similarity=0.052 Sum_probs=169.0
Q ss_pred CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEEEecCCC-----------CCEEEEEECCCe
Q 009380 281 HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQPNN-----------VNTLYFGEGQGG 348 (536)
Q Consensus 281 h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~-----------~~~l~~g~~dg~ 348 (536)
|...-.++.|+|.| +|+.|+ ...|.+-|..+-+.+. +..|...|+.+.|.|.. .-+|+++...|.
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred CcccccccccCccc--eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 34446788999986 666666 5568888887765444 44577899999997742 125677778899
Q ss_pred EEEEECCCCccceeEeccCCCeEEEEEecC---CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-
Q 009380 349 LNIWDVRSRKSATEWLLHEARINTIDFNPR---NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP- 424 (536)
Q Consensus 349 i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~---~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp- 424 (536)
|.+||...+..+..+..|.+++..++|-+. ..++|++-....+|.+|+..+|+ .............++.++|
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~----k~Wk~~ys~~iLs~f~~DPf 166 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE----KFWKYDYSHEILSCFRVDPF 166 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc----eeeccccCCcceeeeeeCCC
Confidence 999999999888899999999999999863 22567777777899999999874 3333333345667799999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCC----cceEEe----ccC--------CCCce-----------eeeeEEEEcCCCCEEE
Q 009380 425 SGSSLATTSFDDTIGIWSGVNFE----NTSMIH----HNN--------QTGRW-----------ISSFRAIWGWDDSCVF 477 (536)
Q Consensus 425 ~g~~l~t~s~dg~I~iwd~~~~~----~~~~~~----~~~--------~~~~~-----------~~~~~~~~s~~g~~l~ 477 (536)
|.+.+..-+..|.+.+-+.-... +.+.+. |.. .++.. ..+.+.+|+|.-+.++
T Consensus 167 d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 167 DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 66777777778877776643211 112221 110 00000 0112356777655555
Q ss_pred EEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 478 IGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 478 ~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
.....+.+.|+|++-..++..+.-+...+....+-..|.+ +.|.+.-.||.+.||-
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~r-d~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRR-DALFCLHSNGRLTIRV 302 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCc-ceEEEEecCCeEEEEE
Confidence 5556788999999988888887765555554455555644 7899999999999995
No 305
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.82 E-value=8e-07 Score=79.69 Aligned_cols=224 Identities=10% Similarity=0.060 Sum_probs=140.3
Q ss_pred CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec-----CCCCEEEEEECCCeEEEEECCCCeEE--EeecCCCceeE
Q 009380 257 LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ-----YCLSKIFTSCYDGLIRLMDAEKEVFD--LVYSSEYAVFS 329 (536)
Q Consensus 257 dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~-----~~~~~l~s~s~dg~I~vwd~~~~~~~--~~~~~~~~i~~ 329 (536)
...|-+|++.+.. ...+..+ ..+.|.| .. .+|+.|+.-|...+|...+.... ..-.+...|+-
T Consensus 51 t~sv~i~~~y~N~--~~iv~~y-------~g~~F~p~s~~~kc-~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~ 120 (344)
T KOG4532|consen 51 TISVPINSHYSNP--KGIVEFY-------TGMTFTPGSFINKC-VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTL 120 (344)
T ss_pred eeeeEeccccCCc--hhhEEee-------ecccccchHhhccc-cEEEeccccceeeeecccCcccceeeecccccchhh
Confidence 3457778877632 1122222 2344444 23 68999999999999998865332 22223333322
Q ss_pred EEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCC--CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380 330 LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA--RINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407 (536)
Q Consensus 330 l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~--~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~ 407 (536)
+.-..+...-+..++.|.+++++++.-+..-.. .|.. .++++++++++ .++++.+....|..|.+..... ..
T Consensus 121 ~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~--~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~se---y~ 194 (344)
T KOG4532|consen 121 VKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA--VHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESE---YI 194 (344)
T ss_pred hhhhcccccceeeccCCcceeEEEEecCcccce--eeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccc---ee
Confidence 211122223467788888898888865433222 2333 37899999987 7999999889999999886431 22
Q ss_pred ce--eecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe---ccCCCCceeeeeEEEEcCCCC--EEEEEc
Q 009380 408 MK--VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH---HNNQTGRWISSFRAIWGWDDS--CVFIGN 480 (536)
Q Consensus 408 ~~--~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~g~--~l~~gs 480 (536)
.. .......-.+.+|+.....+|++..||++.|||++......... .....| .+.. +.|++.|. +|+..-
T Consensus 195 ~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG-a~R~--c~Fsl~g~lDLLf~sE 271 (344)
T KOG4532|consen 195 ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG-AFRV--CRFSLYGLLDLLFISE 271 (344)
T ss_pred eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC-ceEE--EEecCCCcceEEEEec
Confidence 22 22345556778999999999999999999999998765433221 111222 2333 66887654 466665
Q ss_pred CCCcEEEEcCCccccceec
Q 009380 481 MTRTVEVISPAQRRSVATL 499 (536)
Q Consensus 481 ~dg~I~v~d~~~~~~~~~l 499 (536)
.-+.+.|.|++++...+.+
T Consensus 272 hfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 272 HFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred CcceEEEEEcccCceeeEE
Confidence 6678999999888654443
No 306
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.79 E-value=1.1e-07 Score=89.88 Aligned_cols=158 Identities=13% Similarity=0.118 Sum_probs=108.7
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEECCCC----eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEEC---CCCcc
Q 009380 287 GIVTQQYCLSKIFTSCYDGLIRLMDAEKE----VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV---RSRKS 359 (536)
Q Consensus 287 ~l~~~~~~~~~l~s~s~dg~I~vwd~~~~----~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~---~~~~~ 359 (536)
.+..++.+ .+|+.+..+....+++.... ++...+......+++.|..+. ..+.++..-|.++-+|+ ..+.
T Consensus 67 ~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~~~~~- 143 (390)
T KOG3914|consen 67 LVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILSADSGR- 143 (390)
T ss_pred ccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeecc-ceEEEEeecCCceeeeeecccccC-
Confidence 34455555 77777777777666665543 233333344455566665555 44555544444444444 3333
Q ss_pred ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee-ecccCceeEEEEccCCCeEEEEeCCCcE
Q 009380 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV-LSHKRAVHSAYFSPSGSSLATTSFDDTI 438 (536)
Q Consensus 360 ~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~-~~~~~~v~~l~~sp~g~~l~t~s~dg~I 438 (536)
...+.+|-..+..|+|+||+ ++++++..|..|+|-...... .+..+ .+|..-|..++.-++. .|+++|.|++|
T Consensus 144 ~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f----~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tl 217 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATF----VIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTL 217 (390)
T ss_pred cchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCccc----chhhhccccHhheeeeeeccCc-eeeecCCCCcE
Confidence 33445799999999999988 799999999999998776531 22222 3899999999998755 48999999999
Q ss_pred EEEeCCCCCcceEEe
Q 009380 439 GIWSGVNFENTSMIH 453 (536)
Q Consensus 439 ~iwd~~~~~~~~~~~ 453 (536)
++||+.+++.+.++.
T Consensus 218 r~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 218 RLWDITSGKLLDTCD 232 (390)
T ss_pred EEEecccCCcccccc
Confidence 999999999887664
No 307
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.74 E-value=2.6e-06 Score=79.96 Aligned_cols=217 Identities=15% Similarity=0.116 Sum_probs=132.3
Q ss_pred CCeEEEEECCCCeEEEeecCCCceeEEE--ecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCC
Q 009380 304 DGLIRLMDAEKEVFDLVYSSEYAVFSLS--QQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPN 381 (536)
Q Consensus 304 dg~I~vwd~~~~~~~~~~~~~~~i~~l~--~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~ 381 (536)
+|+|..||..+++..........+.... ..+++ ..+++++.++.|..||..+|+.+..+.. ...+...-... + .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~-~-~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDG-GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVD-G-G 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEET-TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEE-T-T
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeC-CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeec-c-c
Confidence 6899999999988776665422222222 22233 5788889999999999999998877764 22222111222 3 3
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCccee-eccc---CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC
Q 009380 382 IMATSSTDGTACIWDLRSMATDKPEPMKV-LSHK---RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ 457 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~-~~~~---~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~ 457 (536)
.++.++.++.|..+|..+++ ..... .... ...........+..++++..++.|..+|+.+++.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGK----VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSC----EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcc----eeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 56666678899999998875 22221 1110 1112222333478888888899999999999998877754332
Q ss_pred CC-ceee-----eeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEE
Q 009380 458 TG-RWIS-----SFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY 531 (536)
Q Consensus 458 ~~-~~~~-----~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~ 531 (536)
.. ..+. ...+.+. ++ .+++++.++.+..+|..+++.+.... .+. .. .. ..+ .+..|+.++.+|.|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~-~~-~~--~~~-~~~~l~~~~~~~~l~ 225 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISG-IY-SL--PSV-DGGTLYVTSSDGRLY 225 (238)
T ss_dssp -SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC-SS--EC-EC--EEC-CCTEEEEEETTTEEE
T ss_pred CCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec-CCC-cc-CC--cee-eCCEEEEEeCCCEEE
Confidence 21 1110 0112222 34 77778778764444999998664333 111 11 11 222 357888888999999
Q ss_pred EEecC
Q 009380 532 VWTSD 536 (536)
Q Consensus 532 iW~~d 536 (536)
.||+.
T Consensus 226 ~~d~~ 230 (238)
T PF13360_consen 226 ALDLK 230 (238)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99974
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=4.9e-07 Score=92.63 Aligned_cols=187 Identities=13% Similarity=0.109 Sum_probs=134.3
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
.+.|+|++++- .+|+-|+.+|.|++++... .. .....|+.. ...| .+++|||.||+|.|..+-
T Consensus 39 ~D~is~~av~~----~~~~~GtH~g~v~~~~~~~-----~~-~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 39 NDAISCCAVHD----KFFALGTHRGAVYLTTCQG-----NP-KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLF 101 (846)
T ss_pred hhHHHHHHhhc----ceeeeccccceEEEEecCC-----cc-ccccccccc------ccCC-ceEEEecCCCcEEEeecc
Confidence 46788999964 7999999999999999874 33 444455544 4566 999999999999999999
Q ss_pred CCeEEEeecCCCceeEEEecCC----CCCEEEEEECCCeEEEEECCCCcc--ceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380 314 KEVFDLVYSSEYAVFSLSQQPN----NVNTLYFGEGQGGLNIWDVRSRKS--ATEWLLHEARINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 314 ~~~~~~~~~~~~~i~~l~~~~~----~~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~i~~~p~~~~~l~s~s 387 (536)
+......+....++.+++++|+ ....+++|+.-| +.++.-+-... ...+..-.++|.+|+|. | +++|-++
T Consensus 102 ~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g-~lIAWan 177 (846)
T KOG2066|consen 102 TDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--G-NLIAWAN 177 (846)
T ss_pred CCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--C-cEEEEec
Confidence 8888788888899999999998 235789999888 87776442111 12345567899999998 4 7888888
Q ss_pred CCCcEEEEeCCCCCCCCCC--cceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380 388 TDGTACIWDLRSMATDKPE--PMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 388 ~dg~i~iwdl~~~~~~~~~--~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~ 444 (536)
.+| |+|||+.+.+..... +.........-..+.|.++.++ +.|...+|+|..++
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L--VIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL--VIGWGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE--EEecCCeEEEEEEe
Confidence 776 899999875421100 0111112223456788876543 34666789999887
No 309
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.74 E-value=2.4e-05 Score=71.51 Aligned_cols=236 Identities=11% Similarity=0.060 Sum_probs=134.7
Q ss_pred EEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC---CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe
Q 009380 240 MKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL---GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV 316 (536)
Q Consensus 240 v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~ 316 (536)
++.+. +|++||.-. |..|.|-...++- ...+...+-.. -.-..++|+||+ .+|+.+...|+|+++|+....
T Consensus 3 ~~~~~--~Gk~lAi~q-d~~iEiRsa~Ddf--~si~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 3 LALSS--DGKLLAILQ-DQCIEIRSAKDDF--SSIIGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred eeecC--CCcEEEEEe-ccEEEEEeccCCc--hheeEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEecccce
Confidence 45556 888777754 5677777665432 12222222222 235689999999 999999999999999998754
Q ss_pred EEEeec-------CCCceeEEEecCCC-----CCEEEEEECCCeEEEEECCCC-----ccceeEe---ccCCCeEEEEEe
Q 009380 317 FDLVYS-------SEYAVFSLSQQPNN-----VNTLYFGEGQGGLNIWDVRSR-----KSATEWL---LHEARINTIDFN 376 (536)
Q Consensus 317 ~~~~~~-------~~~~i~~l~~~~~~-----~~~l~~g~~dg~i~i~d~~~~-----~~~~~~~---~h~~~i~~i~~~ 376 (536)
+..+-. ....|..+.|.+.. ...|++-...|.++-|-+..+ +..+.+. .+...|+++.++
T Consensus 77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH 156 (282)
T ss_pred eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence 433221 23567777775432 235777778888887775322 2233333 246789999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCC-e-EEEEeCCCc------EEEEeCCCCCc
Q 009380 377 PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS-S-LATTSFDDT------IGIWSGVNFEN 448 (536)
Q Consensus 377 p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~-l~t~s~dg~------I~iwd~~~~~~ 448 (536)
|.. ++|+.|+.... ..+. .......+++-..-.+.. + .++...|+. ..+|.+-+
T Consensus 157 p~h-~LLlVgG~~~~------~~~~--------s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~--- 218 (282)
T PF15492_consen 157 PKH-RLLLVGGCEQN------QDGM--------SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS--- 218 (282)
T ss_pred CCC-CEEEEeccCCC------CCcc--------ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc---
Confidence 976 56666654322 0100 001111222211111111 1 112222221 12232211
Q ss_pred ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccC
Q 009380 449 TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS 501 (536)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~ 501 (536)
...+....+.. -.++++..||||..|++...+|.|.+|++.+-++...+..
T Consensus 219 ~~~fs~~~~~~--d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 219 FKFFSRQGQEQ--DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred eeeeeccccCC--CceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 11111111122 2345577899999999999999999999999877776654
No 310
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.65 E-value=1.8e-05 Score=85.04 Aligned_cols=237 Identities=17% Similarity=0.123 Sum_probs=152.4
Q ss_pred CCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC----CC
Q 009380 282 LGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR----SR 357 (536)
Q Consensus 282 ~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~----~~ 357 (536)
...|.++.|..+. +.++.+..+|.|.+-|.++......-..+..|.+++|+|+. ..++..+..++|.+-+-. ..
T Consensus 68 d~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADT-NSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CcceEEEEEeccc-ceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhc
Confidence 3679999999998 88999999999999999998888888888999999999998 788888888787765421 11
Q ss_pred ccc-------------------eeEecc---------------------CCCeEEEEEecCCCCEEEEEe----CC-CcE
Q 009380 358 KSA-------------------TEWLLH---------------------EARINTIDFNPRNPNIMATSS----TD-GTA 392 (536)
Q Consensus 358 ~~~-------------------~~~~~h---------------------~~~i~~i~~~p~~~~~l~s~s----~d-g~i 392 (536)
+.+ ..|.+. .+.=++|+|--|| .+||+.. .+ +.|
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG-EYFAVSFVESETGTRKI 224 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC-cEEEEEEEeccCCceeE
Confidence 111 112111 1112358999888 5777732 23 789
Q ss_pred EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe---CCCcEEEEeCCCCCcceEE--eccCCCCceeeeeEE
Q 009380 393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS---FDDTIGIWSGVNFENTSMI--HHNNQTGRWISSFRA 467 (536)
Q Consensus 393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s---~dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~ 467 (536)
+|||-. +. .-.......+.-.+++|-|.|..+++.. .|+.|.+|.-+... ...+ +....... +-.+
T Consensus 225 rV~drE-g~----Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~-hg~f~l~~p~de~~---ve~L 295 (1265)
T KOG1920|consen 225 RVYDRE-GA----LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR-HGEFVLPFPLDEKE---VEEL 295 (1265)
T ss_pred EEeccc-ch----hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc-ccccccCCcccccc---hhee
Confidence 999976 21 1111112233446799999999988864 45679999854322 2212 11111111 3347
Q ss_pred EEcCCCCEEEE---EcCCCcEEEEcCCccccc--eeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 468 IWGWDDSCVFI---GNMTRTVEVISPAQRRSV--ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 468 ~~s~~g~~l~~---gs~dg~I~v~d~~~~~~~--~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
+|+.++..|++ ......|++|-+.+..-- +.+..... .-+.|+|.....|..-..+|...+++
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeEEEEecCCcEEEEE
Confidence 89999999888 444455999987664211 11111111 12678887666666666777766655
No 311
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=5e-08 Score=100.25 Aligned_cols=218 Identities=13% Similarity=0.124 Sum_probs=152.6
Q ss_pred CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCC-eE
Q 009380 272 DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQG-GL 349 (536)
Q Consensus 272 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg-~i 349 (536)
......|..|....+|++|+-.. +.|+.|+..|.|+++++.+|.... ...|..+|+-+.-+.+|...|.+++... -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 34556778899999999999987 999999999999999999986554 4468899999999999855555555554 56
Q ss_pred EEEECCC-CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCe
Q 009380 350 NIWDVRS-RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSS 428 (536)
Q Consensus 350 ~i~d~~~-~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~ 428 (536)
.+|++.. +...+.|.. -.++.|+..- +.-+.|..-....+||+.++...........+....-+.+.|+|+..+
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 7899864 444555542 3567888653 333344444568999999975222112222334455588999998887
Q ss_pred EEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeee
Q 009380 429 LATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIP 508 (536)
Q Consensus 429 l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~ 508 (536)
|+- || .+||++..+.++.+...... ....|+|.|.-+++-+ .|||+.+.+.++.++.- -.
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~------~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L----dq 1304 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDY------GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL----DQ 1304 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhhhhheec------ccccccCCCceEEeec-----hhhhhHHHHHHhcCccc----cc
Confidence 753 44 48999988777766432211 1255899999888865 59999999888777642 23
Q ss_pred eeEeecC
Q 009380 509 CRFHAHP 515 (536)
Q Consensus 509 ~~~~~~p 515 (536)
|.+.|+.
T Consensus 1305 c~VtFNs 1311 (1516)
T KOG1832|consen 1305 CAVTFNS 1311 (1516)
T ss_pred eEEEecc
Confidence 4566665
No 312
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.1e-06 Score=80.24 Aligned_cols=253 Identities=11% Similarity=0.060 Sum_probs=146.1
Q ss_pred ccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEE
Q 009380 221 SLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFT 300 (536)
Q Consensus 221 ~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 300 (536)
..++.+..+...|...|..++|+|... .++..++-+..|.|.|+.+ ...+..+..| ..+++++|.-+..++|+.
T Consensus 180 ~~~fkssq~lp~~g~~IrdlafSp~~~-GLl~~asl~nkiki~dlet----~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 180 SHDFKSSQILPGEGSFIRDLAFSPFNE-GLLGLASLGNKIKIMDLET----SCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred cCCcchhhcccccchhhhhhccCcccc-ceeeeeccCceEEEEeccc----ceeeeheecc-CCceeeeeccCCcceeEE
Confidence 345566667788888999999999522 3788889999999999998 6677777777 789999999988889999
Q ss_pred EECCCeEEEEECCCCeEE--Eeec--CCCceeEEEecC------CCCCEEEEEECCCeEEEEECCC--CccceeEe-ccC
Q 009380 301 SCYDGLIRLMDAEKEVFD--LVYS--SEYAVFSLSQQP------NNVNTLYFGEGQGGLNIWDVRS--RKSATEWL-LHE 367 (536)
Q Consensus 301 ~s~dg~I~vwd~~~~~~~--~~~~--~~~~i~~l~~~~------~~~~~l~~g~~dg~i~i~d~~~--~~~~~~~~-~h~ 367 (536)
|...|.|.|||++...-. .... ...+|..++.-+ .+ .+++.... .+..|.+.. +.....+. +..
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt--~l~f~ei~~s~~~~p~vlele~p 330 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALT--VLQFYEIVFSAECLPCVLELEPP 330 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCcccccccc-ceEEeeeh--hhhhhhhhccccCCCcccccCCC
Confidence 999999999999864321 1111 123444444332 22 23433333 355666542 22222222 234
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCc------EEE-EeCCCCCCCCCCcceeecc------cCceeEEEEc-cCCCeEEE-E
Q 009380 368 ARINTIDFNPRNPNIMATSSTDGT------ACI-WDLRSMATDKPEPMKVLSH------KRAVHSAYFS-PSGSSLAT-T 432 (536)
Q Consensus 368 ~~i~~i~~~p~~~~~l~s~s~dg~------i~i-wdl~~~~~~~~~~~~~~~~------~~~v~~l~~s-p~g~~l~t-~ 432 (536)
+...++..++...++|++.-.+.+ |-. -|.+.+. +.+.....+ .-.-..+.+. ++.++|+. +
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~---pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g 407 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF---PVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG 407 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCc---eeeeecccccCCcccccccccceeccccccEEEEec
Confidence 556677777755566666544211 111 1111111 000000011 0011112232 34455544 3
Q ss_pred eCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCC-CCEEEEEcCCCcEEEEcCC
Q 009380 433 SFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD-DSCVFIGNMTRTVEVISPA 491 (536)
Q Consensus 433 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~~gs~dg~I~v~d~~ 491 (536)
...+.+.+||..+++.+..+.... .+..++. +.-+ +.||++-. |..++||..+
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp-~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLALSE----PVLDICP-NDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred CCcceeEEeccchhheeeecccCc----ceeecce-eecCCcchhhhee-cceEEEEecC
Confidence 455679999999999888885542 2333222 2223 34555544 5578887654
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=2.3e-06 Score=87.84 Aligned_cols=189 Identities=13% Similarity=0.162 Sum_probs=135.6
Q ss_pred CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee
Q 009380 283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE 362 (536)
Q Consensus 283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~ 362 (536)
..++|++++. ..|+-|+.+|.|++++..... ...+.|... ...| .++++|+.||.|.|..+-+.+...+
T Consensus 40 D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVHD---KFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhhc---ceeeeccccceEEEEecCCcc-ccccccccc------ccCC-ceEEEecCCCcEEEeeccCCcccee
Confidence 4566777764 789999999999999987654 344444332 4445 8999999999999999988887776
Q ss_pred EeccCCCeEEEEEecC----CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcE
Q 009380 363 WLLHEARINTIDFNPR----NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTI 438 (536)
Q Consensus 363 ~~~h~~~i~~i~~~p~----~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I 438 (536)
+. ...++.+|+++|+ ....+++|+.-| +.++.-+-.... .........++|.+++|. |++||=++.+| |
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk--~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v 181 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK--DSVVLSEGEGPIHSIKWR--GNLIAWANDDG-V 181 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc--cceeeecCccceEEEEec--CcEEEEecCCC-c
Confidence 65 6788999999997 235789999888 888765543321 222445678899999995 88898888877 9
Q ss_pred EEEeCCCCCcceEEeccCCCCc-eeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380 439 GIWSGVNFENTSMIHHNNQTGR-WISSFRAIWGWDDSCVFIGNMTRTVEVISPA 491 (536)
Q Consensus 439 ~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~ 491 (536)
+|||+...+.+..+....+..+ ........|.++. .|++|-.| +|.|..+.
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 9999988887777654332222 1222336677654 56666544 68888776
No 314
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4.3e-07 Score=86.94 Aligned_cols=214 Identities=13% Similarity=0.078 Sum_probs=144.0
Q ss_pred CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE----EEeecCCCceeEEEecCCCCCEEEEEEC-CCeEEEEECC
Q 009380 281 HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF----DLVYSSEYAVFSLSQQPNNVNTLYFGEG-QGGLNIWDVR 355 (536)
Q Consensus 281 h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~----~~~~~~~~~i~~l~~~~~~~~~l~~g~~-dg~i~i~d~~ 355 (536)
|...|+.+..... +++.+++.||.++.|--..-.. .....|-..|.+++.+.++ .++.+.+. |..++++|+.
T Consensus 8 hrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEee
Confidence 7777887766554 7999999999999998654221 2233567889999999988 77888777 9999999998
Q ss_pred CCccceeEeccCCCeEEEEEecCCC----CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEE
Q 009380 356 SRKSATEWLLHEARINTIDFNPRNP----NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLAT 431 (536)
Q Consensus 356 ~~~~~~~~~~h~~~i~~i~~~p~~~----~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t 431 (536)
+-..+..+..-. .-..++|....+ .+.++.-.+|.+.|+|-+... .+......-|..+|..+.+++.+..+++
T Consensus 85 n~DminmiKL~~-lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~--~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 85 NFDMINMIKLVD-LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF--CQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred ccchhhhccccc-CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCc--CccceecccccCceEEEEeeccccceee
Confidence 766554433211 111223322111 123333457999999987643 1223333369999999999999999999
Q ss_pred EeCCCcEEEEeCCC-CCcc-----eEEeccCCC----CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380 432 TSFDDTIGIWSGVN-FENT-----SMIHHNNQT----GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 432 ~s~dg~I~iwd~~~-~~~~-----~~~~~~~~~----~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~ 500 (536)
....|-|..|.... .+.. ..+.+.... .......++.|+|+|..+.+-+.|..|+++...+++.++.+.
T Consensus 162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 99999999999762 1111 111111100 000112236789999999999999999999999987755443
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.59 E-value=0.00011 Score=69.35 Aligned_cols=209 Identities=16% Similarity=0.144 Sum_probs=130.4
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCc-EEEEECCCCCCCCCceEEeccCCCC--EEEEEEecCCCCEEEEEEC-----CC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGN-ITFWNLDSQQDEDNGIYLFRTHLGP--ISGIVTQQYCLSKIFTSCY-----DG 305 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~-v~iwd~~~~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~~l~s~s~-----dg 305 (536)
+.+...++.+|. ....++.+-.-|+ ..+||..++ .....+....+. --.-.|+++| .+|++.-. .|
T Consensus 4 P~RgH~~a~~p~-~~~avafaRRPG~~~~v~D~~~g----~~~~~~~a~~gRHFyGHg~fs~dG-~~LytTEnd~~~g~G 77 (305)
T PF07433_consen 4 PARGHGVAAHPT-RPEAVAFARRPGTFALVFDCRTG----QLLQRLWAPPGRHFYGHGVFSPDG-RLLYTTENDYETGRG 77 (305)
T ss_pred CccccceeeCCC-CCeEEEEEeCCCcEEEEEEcCCC----ceeeEEcCCCCCEEecCEEEcCCC-CEEEEeccccCCCcE
Confidence 345566777774 4456666666654 567888763 333332221111 1125799999 88888644 58
Q ss_pred eEEEEECCCC--eEEEeecCCCceeEEEecCCCCCEEEEEEC------------------CCeEEEEECCCCccceeEe-
Q 009380 306 LIRLMDAEKE--VFDLVYSSEYAVFSLSQQPNNVNTLYFGEG------------------QGGLNIWDVRSRKSATEWL- 364 (536)
Q Consensus 306 ~I~vwd~~~~--~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~------------------dg~i~i~d~~~~~~~~~~~- 364 (536)
.|-|||...+ +...+..+.-..-.+.+.|++ ..|+++.. +-+|...|..+|+.+....
T Consensus 78 ~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L 156 (305)
T PF07433_consen 78 VIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL 156 (305)
T ss_pred EEEEEECcCCcEEEeEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence 9999999933 222333444556677889988 45555421 2356777888888877744
Q ss_pred ---ccCCCeEEEEEecCCCCEEEEEeCCC-------cEEEEeCCCCCCCCCCcce-----eecccCceeEEEEccCCCeE
Q 009380 365 ---LHEARINTIDFNPRNPNIMATSSTDG-------TACIWDLRSMATDKPEPMK-----VLSHKRAVHSAYFSPSGSSL 429 (536)
Q Consensus 365 ---~h~~~i~~i~~~p~~~~~l~s~s~dg-------~i~iwdl~~~~~~~~~~~~-----~~~~~~~v~~l~~sp~g~~l 429 (536)
.|.-.|..+++.++| ..++..-..| .|.+++.... ...+. .......+-+|++++++.++
T Consensus 157 p~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~----~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~i 231 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA----LRLLPAPEEQWRRLNGYIGSIAADRDGRLI 231 (305)
T ss_pred CccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc----ceeccCChHHHHhhCCceEEEEEeCCCCEE
Confidence 377889999999987 3333332222 2344443321 01111 12345788999999999877
Q ss_pred EEEe-CCCcEEEEeCCCCCcceEEec
Q 009380 430 ATTS-FDDTIGIWSGVNFENTSMIHH 454 (536)
Q Consensus 430 ~t~s-~dg~I~iwd~~~~~~~~~~~~ 454 (536)
+++| ..+.+.+||..++..+.....
T Consensus 232 a~tsPrGg~~~~~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 232 AVTSPRGGRVAVWDAATGRLLGSVPL 257 (305)
T ss_pred EEECCCCCEEEEEECCCCCEeecccc
Confidence 6655 677899999999887766543
No 316
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.58 E-value=4.2e-05 Score=72.04 Aligned_cols=229 Identities=13% Similarity=0.127 Sum_probs=140.0
Q ss_pred EEEEEecCCCCEEEEEECCCe-EEEEECCCCeEEEeecCC-C--ceeEEEecCCCCCEEEEEEC-----CCeEEEEECC-
Q 009380 286 SGIVTQQYCLSKIFTSCYDGL-IRLMDAEKEVFDLVYSSE-Y--AVFSLSQQPNNVNTLYFGEG-----QGGLNIWDVR- 355 (536)
Q Consensus 286 ~~l~~~~~~~~~l~s~s~dg~-I~vwd~~~~~~~~~~~~~-~--~i~~l~~~~~~~~~l~~g~~-----dg~i~i~d~~- 355 (536)
..++.+|..+..++.+-.-|+ ..+||..++......... + ---.-+|++++ ++|++.-. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG-RLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC-CEEEEeccccCCCcEEEEEEECcC
Confidence 467788866567777766654 678999988765444221 1 11246799998 78887543 4889999999
Q ss_pred CCccceeEeccCCCeEEEEEecCCCCEEEEEe------------------CCCcEEEEeCCCCCCCCCCcceeecccCce
Q 009380 356 SRKSATEWLLHEARINTIDFNPRNPNIMATSS------------------TDGTACIWDLRSMATDKPEPMKVLSHKRAV 417 (536)
Q Consensus 356 ~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s------------------~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v 417 (536)
+.+.+.+|..|.-.-..+.+.|++. .|+.+. .+..+...|..+++-.....+.-..|..+|
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 5566788887777778899999884 444442 122344455555431111111113478899
Q ss_pred eEEEEccCCCeEEEEeCCCc-------EEEEeCCCCCcceEEecc----CCCCceeeeeEEEEcCCCCEEEEEcCC-CcE
Q 009380 418 HSAYFSPSGSSLATTSFDDT-------IGIWSGVNFENTSMIHHN----NQTGRWISSFRAIWGWDDSCVFIGNMT-RTV 485 (536)
Q Consensus 418 ~~l~~sp~g~~l~t~s~dg~-------I~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~g~~l~~gs~d-g~I 485 (536)
..+++.++|..++..-..|. |.+++.. +....+... ......+-+ ++++.++.++++.+-- +.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gS--Ia~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGS--IAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEE--EEEeCCCCEEEEECCCCCEE
Confidence 99999999986665544432 4444432 222222211 111222333 7788999887666654 779
Q ss_pred EEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEcc
Q 009380 486 EVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 526 (536)
Q Consensus 486 ~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~ 526 (536)
.+||..+++.+....-.. .|.++..+ +.++++.+.
T Consensus 242 ~~~d~~tg~~~~~~~l~D----~cGva~~~--~~f~~ssG~ 276 (305)
T PF07433_consen 242 AVWDAATGRLLGSVPLPD----ACGVAPTD--DGFLVSSGQ 276 (305)
T ss_pred EEEECCCCCEeeccccCc----eeeeeecC--CceEEeCCC
Confidence 999999998876655322 23445443 245655554
No 317
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.56 E-value=2.2e-08 Score=99.70 Aligned_cols=199 Identities=19% Similarity=0.297 Sum_probs=136.7
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE----CCCeEEEEE
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC----YDGLIRLMD 311 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s----~dg~I~vwd 311 (536)
-+-|+++.-..+..++++|..+|.|.+-.+.... ........+|..+.++++|++-..+.|+.|- .|..+.|||
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h--dSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPH--DSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcc--cccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3667776654355789999999999999887643 2234455678899999999997646666663 367899999
Q ss_pred CCCC--eEE---Eeec-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEE
Q 009380 312 AEKE--VFD---LVYS-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMAT 385 (536)
Q Consensus 312 ~~~~--~~~---~~~~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s 385 (536)
+.++ .+. .+.. ......++||..+. .++.+|.....+.++|+|..... ...-.+..+..+...|-.++++++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhh-hhhhhhhhcccceecCCCCCceec
Confidence 9876 111 1112 33556689999665 78888988889999999843221 111234566778888866678887
Q ss_pred EeCCCcEEEEe-CCCCCCCCCCcceeeccc-----CceeEEEEcc--CCCeEEEEe-CCCcEEEEeCC
Q 009380 386 SSTDGTACIWD-LRSMATDKPEPMKVLSHK-----RAVHSAYFSP--SGSSLATTS-FDDTIGIWSGV 444 (536)
Q Consensus 386 ~s~dg~i~iwd-l~~~~~~~~~~~~~~~~~-----~~v~~l~~sp--~g~~l~t~s-~dg~I~iwd~~ 444 (536)
-. ||.|.+|| .++.+ .++....|. ..+..++|+| .|. +++.. ..++|++||+.
T Consensus 214 ~~-dg~iAiwD~~rnie----npl~~i~~~~N~~~~~l~~~aycPtrtgl-la~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIE----NPLQIILRNENKKPKQLFALAYCPTRTGL-LAVLSRDSITIRLYDIC 275 (783)
T ss_pred cc-cCceeeccchhhhc----cHHHHHhhCCCCcccceeeEEeccCCcch-hhhhccCcceEEEeccc
Confidence 76 99999999 55543 222222222 2489999999 444 44444 56789999975
No 318
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.52 E-value=0.00028 Score=63.58 Aligned_cols=118 Identities=17% Similarity=0.119 Sum_probs=80.2
Q ss_pred cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM 310 (536)
Q Consensus 231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw 310 (536)
.....+|-+-+.- -|++++.|.+.|.+++.+..+ +.....+..-..-=......+++ .+++.++.|++.+..
T Consensus 49 ~ilg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~t----Gs~~w~f~~~~~vk~~a~~d~~~-glIycgshd~~~yal 120 (354)
T KOG4649|consen 49 AILGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKT----GSQIWNFVILETVKVRAQCDFDG-GLIYCGSHDGNFYAL 120 (354)
T ss_pred hhhCceeeeeeEE---ECCEEEEEEccCcEEEEEecc----hhheeeeeehhhhccceEEcCCC-ceEEEecCCCcEEEe
Confidence 3345566665554 357899999999999999998 55555555432222233455666 899999999999999
Q ss_pred ECCCCeEEEeecCCCcee-EEEecCCCCCEEEEEECCCeEEEEECCCC
Q 009380 311 DAEKEVFDLVYSSEYAVF-SLSQQPNNVNTLYFGEGQGGLNIWDVRSR 357 (536)
Q Consensus 311 d~~~~~~~~~~~~~~~i~-~l~~~~~~~~~l~~g~~dg~i~i~d~~~~ 357 (536)
|..+..+.......+.+. +-+..+.. ..|+++...|.|.-......
T Consensus 121 D~~~~~cVykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 121 DPKTYGCVYKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred cccccceEEecccCCceeccceecCCC-ceEEEEeccceEEEEccCCC
Confidence 999887766555444433 33444433 56777888888777766554
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.51 E-value=1.7e-06 Score=89.75 Aligned_cols=150 Identities=19% Similarity=0.256 Sum_probs=118.7
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC---------CCe
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY---------DGL 306 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~---------dg~ 306 (536)
.|+-++. +++++++|...|+|.+-|..+ .+.++++..|++.|.++... | ++|++|++ |..
T Consensus 179 ~v~imR~----Nnr~lf~G~t~G~V~LrD~~s----~~~iht~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~F 247 (1118)
T KOG1275|consen 179 GVTIMRY----NNRNLFCGDTRGTVFLRDPNS----FETIHTFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPF 247 (1118)
T ss_pred ceEEEEe----cCcEEEeecccceEEeecCCc----Cceeeeeeccccceeeeecc--C-CeEEEeecccccccccccch
Confidence 4666665 668999999999999999998 88999999999999876664 5 89999986 556
Q ss_pred EEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC---CCc-cceeEeccCCCeEEEEEecCCCCE
Q 009380 307 IRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR---SRK-SATEWLLHEARINTIDFNPRNPNI 382 (536)
Q Consensus 307 I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~---~~~-~~~~~~~h~~~i~~i~~~p~~~~~ 382 (536)
|+|||++.-....-........-+.|+|.-...+++.+..|...+.|.. ... .+..+......+..+++++.+ +.
T Consensus 248 vkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~-~a 326 (1118)
T KOG1275|consen 248 VKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNG-DA 326 (1118)
T ss_pred hhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCC-ce
Confidence 8999998765544444444446678899887889999999999999943 331 134444556679999999976 79
Q ss_pred EEEEeCCCcEEEEeC
Q 009380 383 MATSSTDGTACIWDL 397 (536)
Q Consensus 383 l~s~s~dg~i~iwdl 397 (536)
++.|..+|.|.+|--
T Consensus 327 lafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 327 LAFGDHEGHVNLWAD 341 (1118)
T ss_pred EEEecccCcEeeecC
Confidence 999999999999973
No 320
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.51 E-value=7.6e-05 Score=74.95 Aligned_cols=115 Identities=11% Similarity=0.113 Sum_probs=85.9
Q ss_pred CCCceeEEEecCCCCCEEEEEE----CCCe----EEEEECCCCcc--ceeE-eccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380 323 SEYAVFSLSQQPNNVNTLYFGE----GQGG----LNIWDVRSRKS--ATEW-LLHEARINTIDFNPRNPNIMATSSTDGT 391 (536)
Q Consensus 323 ~~~~i~~l~~~~~~~~~l~~g~----~dg~----i~i~d~~~~~~--~~~~-~~h~~~i~~i~~~p~~~~~l~s~s~dg~ 391 (536)
.+....++.|+...++.+.+.. .+|. -.+|++..++. +... -.....|.+++++|+. ..|+.|+.||.
T Consensus 204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E-~kLvlGC~DgS 282 (545)
T PF11768_consen 204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSE-DKLVLGCEDGS 282 (545)
T ss_pred ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCccc-ceEEEEecCCe
Confidence 4556678888876667777643 2343 35666655433 1111 1577899999999977 68999999999
Q ss_pred EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380 392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~ 444 (536)
|.+||.... ......+.-..+.++|+|+|..|++|+.-|.+.+||+.
T Consensus 283 iiLyD~~~~------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 283 IILYDTTRG------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EEEEEcCCC------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 999998773 23333556678999999999999999999999999975
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.50 E-value=3.7e-05 Score=78.98 Aligned_cols=189 Identities=13% Similarity=0.090 Sum_probs=112.5
Q ss_pred EecCCCCEE-EEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEE------------------------
Q 009380 290 TQQYCLSKI-FTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE------------------------ 344 (536)
Q Consensus 290 ~~~~~~~~l-~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~------------------------ 344 (536)
+.|+| ..+ .+.-+.+.+.+.|.++.+......-......+++++++ .++++.+
T Consensus 200 lpnDG-k~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdG-k~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 200 LPNDG-KDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDG-KYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cCCCC-CEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCC-CEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 34455 333 23334566777787775554443333444556666666 4444443
Q ss_pred ----------------CCCeEEEEECCC----CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC-
Q 009380 345 ----------------GQGGLNIWDVRS----RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD- 403 (536)
Q Consensus 345 ----------------~dg~i~i~d~~~----~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~- 403 (536)
.++.|.++|.++ +..+..+-.-......|.++|||.++++++..+.+|.|.|+.+.+..
T Consensus 278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred hHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 124578888777 32232322345667889999999877788888999999999885410
Q ss_pred ------CCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC----------CCcceEEeccCCCCceeeeeEE
Q 009380 404 ------KPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN----------FENTSMIHHNNQTGRWISSFRA 467 (536)
Q Consensus 404 ------~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~ 467 (536)
...+.....-.......+|+++|+.+.+...|..|..||+.. ...+..+....+.++......-
T Consensus 358 ~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~ 437 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGE 437 (635)
T ss_pred hccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCC
Confidence 001122222344556789999999888888999999999875 2222223222333333222212
Q ss_pred EEcCCCCEEEEEc
Q 009380 468 IWGWDDSCVFIGN 480 (536)
Q Consensus 468 ~~s~~g~~l~~gs 480 (536)
.-.++|++|++.+
T Consensus 438 t~~~dgk~l~~~n 450 (635)
T PRK02888 438 TKEADGKWLVSLN 450 (635)
T ss_pred cCCCCCCEEEEcc
Confidence 2357888888764
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=3.9e-05 Score=79.69 Aligned_cols=200 Identities=12% Similarity=0.093 Sum_probs=135.6
Q ss_pred EEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe-----EEEEECCCC
Q 009380 241 KFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL-----IRLMDAEKE 315 (536)
Q Consensus 241 ~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~-----I~vwd~~~~ 315 (536)
+|++ .+..++.|+.+|.|.+++-. ...++.|+.+...|...-|.-++.++|++.+.|+. |++|+++.-
T Consensus 30 c~~s--~~~~vvigt~~G~V~~Ln~s-----~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 30 CCSS--STGSVVIGTADGRVVILNSS-----FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred EEcC--CCceEEEeeccccEEEeccc-----ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 3455 77899999999999888765 46667888887774333444444378888887754 899998742
Q ss_pred ------eEE---Eeec-----CCCceeEEEecCCCCCEEEEEECCCeEEEEEC--CCCcccee--EeccCCCeEEEEEec
Q 009380 316 ------VFD---LVYS-----SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV--RSRKSATE--WLLHEARINTIDFNP 377 (536)
Q Consensus 316 ------~~~---~~~~-----~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~--~~~~~~~~--~~~h~~~i~~i~~~p 377 (536)
.+. .++. ...++.+++.+.+- ..+++|-.+|.|..+.= ...+..+. ......+|+.+.+..
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 122 2333 24678899999886 89999999999998842 11111111 123467899999998
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380 378 RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH 453 (536)
Q Consensus 378 ~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~ 453 (536)
++...+.++. -..|.+|.+.. + .+.......|..+++|..|++....|++++. ..|.+||.....+...+.
T Consensus 182 d~~s~lFv~T-t~~V~~y~l~g-r--~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 182 DGKSVLFVAT-TEQVMLYSLSG-R--TPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CCceeEEEEe-cceeEEEEecC-C--CcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 8865333333 35799999884 2 1223334578889999999986554666554 459999987666555553
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.49 E-value=5.5e-05 Score=81.48 Aligned_cols=202 Identities=12% Similarity=0.174 Sum_probs=134.7
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
.+.|.++.|.- +..-|+.+...|.|.+-|..+. .......-...|.+++|+||. ..++..+.++++.+.+-.
T Consensus 68 d~~i~s~~fl~--d~~~i~v~~~~G~iilvd~et~-----~~eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~ 139 (1265)
T KOG1920|consen 68 DDEIVSVQFLA--DTNSICVITALGDIILVDPETL-----ELEIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKD 139 (1265)
T ss_pred CcceEEEEEec--ccceEEEEecCCcEEEEccccc-----ceeeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEecc
Confidence 47899999999 8999999999999999987752 233333346789999999998 999988888888775431
Q ss_pred ----C-----------CeE---------EEeec---------------------CCCceeEEEecCCCCCEEEEE-----
Q 009380 314 ----K-----------EVF---------DLVYS---------------------SEYAVFSLSQQPNNVNTLYFG----- 343 (536)
Q Consensus 314 ----~-----------~~~---------~~~~~---------------------~~~~i~~l~~~~~~~~~l~~g----- 343 (536)
. ++. ..+.+ ....=++|+|--+| .++++.
T Consensus 140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG-EYFAVSFVESE 218 (1265)
T ss_pred ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC-cEEEEEEEecc
Confidence 0 000 01110 11122458998888 677773
Q ss_pred ECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe---CCCcEEEEeCCCCCCCCCCcceeecccCceeEE
Q 009380 344 EGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS---TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSA 420 (536)
Q Consensus 344 ~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s---~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l 420 (536)
.....|++||.+ |..-..-......-.+++|-|.| .++++-. .|+.|.+|.-+.... ....+........|..+
T Consensus 219 ~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~h-g~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRH-GEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred CCceeEEEeccc-chhhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccc-cccccCCcccccchhee
Confidence 233789999977 44322222333445689999977 5666643 356799998554321 12223333334459999
Q ss_pred EEccCCCeEEE---EeCCCcEEEEeCCCCC
Q 009380 421 YFSPSGSSLAT---TSFDDTIGIWSGVNFE 447 (536)
Q Consensus 421 ~~sp~g~~l~t---~s~dg~I~iwd~~~~~ 447 (536)
+|+.++..|++ ......|++|-+.+..
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEEecCeE
Confidence 99999998887 4445559999887654
No 324
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.45 E-value=4.7e-07 Score=58.13 Aligned_cols=38 Identities=37% Similarity=0.709 Sum_probs=35.2
Q ss_pred ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEe
Q 009380 358 KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWD 396 (536)
Q Consensus 358 ~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwd 396 (536)
+++.++.+|...|++|+|+|++ .+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 5678899999999999999986 7999999999999997
No 325
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.45 E-value=5.3e-07 Score=57.89 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=35.7
Q ss_pred CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEE
Q 009380 273 NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD 311 (536)
Q Consensus 273 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd 311 (536)
+++..+.+|.+.|.+|+|+|++ .+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 4578899999999999999998 9999999999999997
No 326
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.38 E-value=0.0002 Score=69.59 Aligned_cols=287 Identities=13% Similarity=0.025 Sum_probs=142.5
Q ss_pred ccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCC---ceEEEEEEecCCccEEEEEeCCCc
Q 009380 183 FNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPG---RITQMKFLPCSDVRMVVAGSKLGN 259 (536)
Q Consensus 183 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~---~I~~v~~~p~~~~~~l~tg~~dg~ 259 (536)
..-+..-+|.+||+.|.. .+..+|.-.||-+++....+.+...+ ......++| +.+.|+--.....
T Consensus 35 ~~YF~~~~ft~dG~kllF---------~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~--~~~~~~Yv~~~~~ 103 (386)
T PF14583_consen 35 RLYFYQNCFTDDGRKLLF---------ASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP--DDRALYYVKNGRS 103 (386)
T ss_dssp ---TTS--B-TTS-EEEE---------EE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T--TSSEEEEEETTTE
T ss_pred ceeecCCCcCCCCCEEEE---------EeccCCCcceEEEEcccCEEEECccCCCCCccceEEec--CCCeEEEEECCCe
Confidence 345555577888876663 34566777777777766666665543 244567778 6677766555568
Q ss_pred EEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC-CEEEEEEC----------------------CCeEEEEECCCCe
Q 009380 260 ITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL-SKIFTSCY----------------------DGLIRLMDAEKEV 316 (536)
Q Consensus 260 v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~~l~s~s~----------------------dg~I~vwd~~~~~ 316 (536)
|.-.|+.+ .+....+......+-...|..+.. .+++-.-. ...|.-.|+.+++
T Consensus 104 l~~vdL~T----~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~ 179 (386)
T PF14583_consen 104 LRRVDLDT----LEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE 179 (386)
T ss_dssp EEEEETTT------EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--
T ss_pred EEEEECCc----CcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc
Confidence 88888887 333344444555555566653321 34332211 2346667888898
Q ss_pred EEEeecCCCceeEEEecCCCCCEEEEEEC---CC-eEEEEECCC-CccceeEecc--CCCeEEEEEecCCCCEEEEEe--
Q 009380 317 FDLVYSSEYAVFSLSQQPNNVNTLYFGEG---QG-GLNIWDVRS-RKSATEWLLH--EARINTIDFNPRNPNIMATSS-- 387 (536)
Q Consensus 317 ~~~~~~~~~~i~~l~~~~~~~~~l~~g~~---dg-~i~i~d~~~-~~~~~~~~~h--~~~i~~i~~~p~~~~~l~s~s-- 387 (536)
...++....-+..+.|+|.++.+|+.|-. +. .-+||-+++ +.....+..+ ...+..=-|.|+|..+...+.
T Consensus 180 ~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~ 259 (386)
T PF14583_consen 180 RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTP 259 (386)
T ss_dssp EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEET
T ss_pred eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecC
Confidence 88888888889999999999888888654 22 125565543 2223333222 233444568888866555433
Q ss_pred --CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC----------------cEEEEeCCCCCcc
Q 009380 388 --TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD----------------TIGIWSGVNFENT 449 (536)
Q Consensus 388 --~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg----------------~I~iwd~~~~~~~ 449 (536)
.+..|.-+|+.+++. ...........+..+++|++++-=+.|. .|+++++..+...
T Consensus 260 ~~~~~~i~~~d~~t~~~------~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~ 333 (386)
T PF14583_consen 260 GGQDFWIAGYDPDTGER------RRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR 333 (386)
T ss_dssp TT--EEEEEE-TTT--E------EEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred CCCceEEEeeCCCCCCc------eEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence 244577778877531 1112223455677788998776544442 4667777665544
Q ss_pred eEEeccC-----CCCceeeeeEEEEcCCCCE-EEEEcCCCcEEEEcC
Q 009380 450 SMIHHNN-----QTGRWISSFRAIWGWDDSC-VFIGNMTRTVEVISP 490 (536)
Q Consensus 450 ~~~~~~~-----~~~~~~~~~~~~~s~~g~~-l~~gs~dg~I~v~d~ 490 (536)
....|.. .....+.--.+.|+|||++ |+.+++.|...||-+
T Consensus 334 ~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 334 KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 3333321 0001111233779999998 556667787777643
No 327
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.33 E-value=0.00085 Score=60.54 Aligned_cols=143 Identities=14% Similarity=0.079 Sum_probs=92.4
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCc
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYA 326 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~ 326 (536)
...+++.|+..+.+.--|..++ ..+..- --...|.+-+.- -| ++++.|++.|.+++.+..+|.....+...+.
T Consensus 22 skT~v~igSHs~~~~avd~~sG----~~~We~-ilg~RiE~sa~v-vg-dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSG----NLIWEA-ILGVRIECSAIV-VG-DFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred CceEEEEecCCceEEEecCCCC----cEEeeh-hhCceeeeeeEE-EC-CEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 3467888888888888887763 222211 112334333333 34 7899999999999999999966555544444
Q ss_pred eeE-EEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 009380 327 VFS-LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLR 398 (536)
Q Consensus 327 i~~-l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~ 398 (536)
|.+ ....+++ .+++.|+.|++.+..|.++..++...+.....-.+-+..| +..-|..+...|.+---...
T Consensus 95 vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~-g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 95 VKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP-GDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred hccceEEcCCC-ceEEEecCCCcEEEecccccceEEecccCCceeccceecC-CCceEEEEeccceEEEEccC
Confidence 433 2334555 7999999999999999999999988774444334445555 22345555555655444433
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00011 Score=76.46 Aligned_cols=198 Identities=10% Similarity=0.112 Sum_probs=129.2
Q ss_pred cccccceEEecccccCccccccccCCc-eEEEEEEecCCccEEEEEeCCC-----cEEEEECCCCCCC--CCce--EEec
Q 009380 210 KIEVGSCVDIGSLTLKPENIARIMPGR-ITQMKFLPCSDVRMVVAGSKLG-----NITFWNLDSQQDE--DNGI--YLFR 279 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~~~~~~~~~~~~~-I~~v~~~p~~~~~~l~tg~~dg-----~v~iwd~~~~~~~--~~~~--~~~~ 279 (536)
-+..+|.|.+.+-......-.+.++.. |..+.... ...+|++-+.|+ .|+||+++..... ..++ +...
T Consensus 40 igt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~--~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~ 117 (933)
T KOG2114|consen 40 IGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILN--KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIF 117 (933)
T ss_pred EeeccccEEEecccceeeehheecchhhhhHhhccc--CceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeee
Confidence 457788887777655554455677666 44444333 446788776664 4899999864221 2223 1222
Q ss_pred c-----CCCCEEEEEEecCCCCEEEEEECCCeEEEEECC--C--C-eEEEeecCCCceeEEEecCCCCCEEEEEECCCeE
Q 009380 280 T-----HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE--K--E-VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGL 349 (536)
Q Consensus 280 ~-----h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~--~--~-~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i 349 (536)
+ ...++.+++.+.+- ..++.|-.+|.|.++.-+ . + +.........+|+.+.+..++...+++++.. .|
T Consensus 118 ~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~-~V 195 (933)
T KOG2114|consen 118 TIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTE-QV 195 (933)
T ss_pred ccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecc-ee
Confidence 2 35678999999986 899999999999888422 1 2 3333445578999999998885545555554 89
Q ss_pred EEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-cccCce
Q 009380 350 NIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAV 417 (536)
Q Consensus 350 ~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v 417 (536)
.+|.+....+ ...+..|...++|..+++.. ..|++++ +..|.+||.... ..+..+. +|....
T Consensus 196 ~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t-~qfIca~-~e~l~fY~sd~~----~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 196 MLYSLSGRTPSLKVLDNNGISLNCSSFSDGT-YQFICAG-SEFLYFYDSDGR----GPCFAFEVGEKKEM 259 (933)
T ss_pred EEEEecCCCcceeeeccCCccceeeecCCCC-ccEEEec-CceEEEEcCCCc----ceeeeecCCCeEEE
Confidence 9999984443 44577888999999999855 3344444 356999998753 2444444 454443
No 329
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.31 E-value=0.00031 Score=73.13 Aligned_cols=263 Identities=11% Similarity=0.149 Sum_probs=150.1
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC------CEE--EEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG------PIS--GIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV 320 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~------~V~--~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~ 320 (536)
..++.++.++.|.-.|..+ ++.+..+..... .+. .+... ++ ..++.++.++.|..+|.++++....
T Consensus 62 g~vy~~~~~g~l~AlD~~t----G~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~-~~V~v~~~~g~v~AlD~~TG~~~W~ 135 (488)
T cd00216 62 GDMYFTTSHSALFALDAAT----GKVLWRYDPKLPADRGCCDVVNRGVAYW-DP-RKVFFGTFDGRLVALDAETGKQVWK 135 (488)
T ss_pred CEEEEeCCCCcEEEEECCC----ChhhceeCCCCCccccccccccCCcEEc-cC-CeEEEecCCCeEEEEECCCCCEeee
Confidence 4566677789999889887 333433322211 110 11111 22 5788888999999999999987766
Q ss_pred ecCCCc------ee-EEEecCCCCCEEEEEE---------CCCeEEEEECCCCccceeEeccCCC---------------
Q 009380 321 YSSEYA------VF-SLSQQPNNVNTLYFGE---------GQGGLNIWDVRSRKSATEWLLHEAR--------------- 369 (536)
Q Consensus 321 ~~~~~~------i~-~l~~~~~~~~~l~~g~---------~dg~i~i~d~~~~~~~~~~~~h~~~--------------- 369 (536)
+..... +. +..+. + .++++++ .+|.|..+|..+|+.+..+......
T Consensus 136 ~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T cd00216 136 FGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWG 212 (488)
T ss_pred ecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence 544332 11 11222 1 3566664 3678999999999987766532110
Q ss_pred -----e-EEEEEecCCCCEEEEEeCCC------------------cEEEEeCCCCCCCCCCcceeecccC----ceeEEE
Q 009380 370 -----I-NTIDFNPRNPNIMATSSTDG------------------TACIWDLRSMATDKPEPMKVLSHKR----AVHSAY 421 (536)
Q Consensus 370 -----i-~~i~~~p~~~~~l~s~s~dg------------------~i~iwdl~~~~~~~~~~~~~~~~~~----~v~~l~ 421 (536)
| ....+.+.+ ..++.++.++ .|.-+|+.+++..- ......|.. ......
T Consensus 213 ~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W--~~~~~~~~~~~~~~~s~p~ 289 (488)
T cd00216 213 PGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW--FYQTTPHDLWDYDGPNQPS 289 (488)
T ss_pred CCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE--EeeCCCCCCcccccCCCCe
Confidence 0 123333333 4666676554 68888988875211 111111111 001111
Q ss_pred Ec----cCCC---eEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE---------------
Q 009380 422 FS----PSGS---SLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG--------------- 479 (536)
Q Consensus 422 ~s----p~g~---~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g--------------- 479 (536)
+. -+|. .+++++.+|.+..+|..+++.+........ + ...+| ..++++
T Consensus 290 ~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~-~-------~~~~~--~~vyv~~~~~~~~~~~~~~~~ 359 (488)
T cd00216 290 LADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ-P-------MAYDP--GLVYLGAFHIPLGLPPQKKKR 359 (488)
T ss_pred EEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc-c-------cccCC--ceEEEccccccccCcccccCC
Confidence 11 1333 678888999999999999998876543200 0 11222 233332
Q ss_pred ---cCCCcEEEEcCCccccceeccCCce--------eeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 480 ---NMTRTVEVISPAQRRSVATLQSPYI--------SAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 480 ---s~dg~I~v~d~~~~~~~~~l~~~~~--------~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
..+|.|.-+|..+++.+.+...... ......+.. .++.|+.++.||.|+.+|.+
T Consensus 360 ~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald~~ 424 (488)
T cd00216 360 CKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFDAT 424 (488)
T ss_pred CCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEECC
Confidence 2467888999999988877654310 000011122 34788888999999988753
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.00016 Score=73.82 Aligned_cols=156 Identities=18% Similarity=0.234 Sum_probs=107.5
Q ss_pred cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380 233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA 312 (536)
Q Consensus 233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~ 312 (536)
++..|.--++.. .+++++.|+.-|.|++|+-..+ ........+-.+.+..+..+++. .+++.|+..|.|.++-+
T Consensus 32 ~~~~v~lTc~ds--t~~~l~~GsS~G~lyl~~R~~~---~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 32 FPARVKLTCVDA--TEEYLAMGSSAGSVYLYNRHTG---EMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQL 105 (726)
T ss_pred CcceEEEEEeec--CCceEEEecccceEEEEecCch---hhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehh
Confidence 455666666666 7899999999999999998753 12223333344556667778776 88888999999999988
Q ss_pred CCCeE---EEe----ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC----ccceeEeccCCCeEEEEEecCCCC
Q 009380 313 EKEVF---DLV----YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR----KSATEWLLHEARINTIDFNPRNPN 381 (536)
Q Consensus 313 ~~~~~---~~~----~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~----~~~~~~~~h~~~i~~i~~~p~~~~ 381 (536)
+.+.. ..+ ..|...|++++|++++ ..+++|...|.|....+.+. ...+.+......|-.+.... + .
T Consensus 106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~-~ 182 (726)
T KOG3621|consen 106 NKELPRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-S-Y 182 (726)
T ss_pred hccCCCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-c-e
Confidence 76422 111 1357899999999998 89999999999999888762 11334444567788888774 2 4
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 009380 382 IMATSSTDGTACIWDLRS 399 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~ 399 (536)
+|++... . ..+++...
T Consensus 183 LLVStl~-r-~~Lc~tE~ 198 (726)
T KOG3621|consen 183 LLVSTLT-R-CILCQTEA 198 (726)
T ss_pred ehHhhhh-h-hheeecch
Confidence 4444432 2 34555544
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.27 E-value=0.00028 Score=70.60 Aligned_cols=236 Identities=14% Similarity=0.167 Sum_probs=131.5
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCC---------------------------------------CceE
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDED---------------------------------------NGIY 276 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~---------------------------------------~~~~ 276 (536)
.|+.+.|.+ +..-|++|...|.|.||........+ .+..
T Consensus 3 ~v~~vs~a~--~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~ 80 (395)
T PF08596_consen 3 SVTHVSFAP--ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT 80 (395)
T ss_dssp -EEEEEEET--TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred eEEEEEecC--CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence 588999999 87889999999999998764321100 0112
Q ss_pred EeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec---------CCCceeEEEecC----CCC---CEE
Q 009380 277 LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS---------SEYAVFSLSQQP----NNV---NTL 340 (536)
Q Consensus 277 ~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~---------~~~~i~~l~~~~----~~~---~~l 340 (536)
.+....++|++++.+.-| +++.|..+|.+.|.|++....+.... ....++++.|.- ++. -++
T Consensus 81 l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 81 LLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp EE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred heeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 233457899999998664 99999999999999998876554321 234677887751 111 368
Q ss_pred EEEECCCeEEEEECCC-C--ccc----eeEeccCCCeEEEEEe-cCC--------------------CCEEEEEeCCCcE
Q 009380 341 YFGEGQGGLNIWDVRS-R--KSA----TEWLLHEARINTIDFN-PRN--------------------PNIMATSSTDGTA 392 (536)
Q Consensus 341 ~~g~~dg~i~i~d~~~-~--~~~----~~~~~h~~~i~~i~~~-p~~--------------------~~~l~s~s~dg~i 392 (536)
++|+..|.+.+|.+.- . ... .....+.++|..|... .+. +.++++++ +..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccce
Confidence 8999999999998751 1 111 1112456676666532 211 12455554 6679
Q ss_pred EEEeCCCCCCCCCCcceeecccCceeEEEEc-----cCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC-CceeeeeE
Q 009380 393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFS-----PSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT-GRWISSFR 466 (536)
Q Consensus 393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~s-----p~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~-~~~~~~~~ 466 (536)
+++.+.+.+ ...+.......+..+.+- ..+..|++-..+|.|++|.+...+.+..+...... ...+. .
T Consensus 238 rv~~~~~~k----~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~--~ 311 (395)
T PF08596_consen 238 RVFKPPKSK----GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLS--S 311 (395)
T ss_dssp EEE-TT-------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHT--T
T ss_pred EEEeCCCCc----ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccc--c
Confidence 999988743 233333332333445553 35677888899999999999988887776543211 11111 2
Q ss_pred EEEcCCCCEEEEEcCC
Q 009380 467 AIWGWDDSCVFIGNMT 482 (536)
Q Consensus 467 ~~~s~~g~~l~~gs~d 482 (536)
..++++|..++-.+..
T Consensus 312 ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 312 SSISRNGDIFYWTGPS 327 (395)
T ss_dssp -EE-TTS-EEEE-SSS
T ss_pred cEECCCCCEEEEeCcc
Confidence 4567888877665543
No 332
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.27 E-value=3.4e-05 Score=77.38 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=82.9
Q ss_pred EEEEEEecCCCCEEEEEE----CCCe----EEEEECCCCeEE----EeecCCCceeEEEecCCCCCEEEEEECCCeEEEE
Q 009380 285 ISGIVTQQYCLSKIFTSC----YDGL----IRLMDAEKEVFD----LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIW 352 (536)
Q Consensus 285 V~~l~~~~~~~~~l~s~s----~dg~----I~vwd~~~~~~~----~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~ 352 (536)
..++.|+-..+..+.+.. .+|. -++|++...+.. ........+.+++++|+. ..++.|+.||.|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E-~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSE-DKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCccc-ceEEEEecCCeEEEE
Confidence 356778776656776653 3443 346666655433 234577899999999998 899999999999999
Q ss_pred ECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380 353 DVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS 399 (536)
Q Consensus 353 d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~ 399 (536)
|...+.. .+....-..+.++|||+| .+|++|+..|.+.+||+.-
T Consensus 287 D~~~~~t--~~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 287 DTTRGVT--LLAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EcCCCee--eeeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeec
Confidence 9876632 333345667899999988 6999999999999999865
No 333
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.26 E-value=0.00027 Score=70.48 Aligned_cols=272 Identities=12% Similarity=0.043 Sum_probs=148.0
Q ss_pred CCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC
Q 009380 192 EGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE 271 (536)
Q Consensus 192 s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~ 271 (536)
|||++.+... ....+.++-+..+.+.|||+.......+......+....|+| +|+.|+... ++.|.++++.++.
T Consensus 1 S~d~~~~l~~-~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP--~g~~~~~v~-~~nly~~~~~~~~-- 74 (353)
T PF00930_consen 1 SPDGKFVLFA-TNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSP--DGKYIAFVR-DNNLYLRDLATGQ-- 74 (353)
T ss_dssp -TTSSEEEEE-EEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-S--SSTEEEEEE-TTEEEEESSTTSE--
T ss_pred CCCCCeEEEE-ECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeec--CCCeeEEEe-cCceEEEECCCCC--
Confidence 4667666643 235566777888899999986644333333367899999999 999998886 5789999876531
Q ss_pred CCceEEecc-------C---------CCCEEEEEEecCCCCEEEEEECC-Ce----------------------------
Q 009380 272 DNGIYLFRT-------H---------LGPISGIVTQQYCLSKIFTSCYD-GL---------------------------- 306 (536)
Q Consensus 272 ~~~~~~~~~-------h---------~~~V~~l~~~~~~~~~l~s~s~d-g~---------------------------- 306 (536)
....+..+ - -+.-..+-|+|++ ++|+....| ..
T Consensus 75 -~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 75 -ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp -EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred -eEEeccccceeEEcCccceeccccccccccceEECCCC-CEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence 11111111 0 1123568899999 777765433 22
Q ss_pred -------EEEEECCCCeEEEee------cCCCceeEEEecCCCCCEEEEEEC--C---CeEEEEECCCCccceeEe-ccC
Q 009380 307 -------IRLMDAEKEVFDLVY------SSEYAVFSLSQQPNNVNTLYFGEG--Q---GGLNIWDVRSRKSATEWL-LHE 367 (536)
Q Consensus 307 -------I~vwd~~~~~~~~~~------~~~~~i~~l~~~~~~~~~l~~g~~--d---g~i~i~d~~~~~~~~~~~-~h~ 367 (536)
+.|+|+.+++...+. ....-+..+.|.+++ ..|++.-. + ..+.++|..++.....+. ...
T Consensus 153 ~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~-~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~ 231 (353)
T PF00930_consen 153 DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG-KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD 231 (353)
T ss_dssp S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT-EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC-cEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence 333444444322111 234457788898887 43333322 2 357778888776533332 222
Q ss_pred CCe---EEEEEe-cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeE-EEEccCCCeEE-EEeCCC----c
Q 009380 368 ARI---NTIDFN-PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS-AYFSPSGSSLA-TTSFDD----T 437 (536)
Q Consensus 368 ~~i---~~i~~~-p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~-l~~sp~g~~l~-t~s~dg----~ 437 (536)
..| ..+.|. +++..++.....||.-+||-+.... ..+..+....-.|.. +.|+++++.|+ ++..++ .
T Consensus 232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~---~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~ 308 (353)
T PF00930_consen 232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG---GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERH 308 (353)
T ss_dssp SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS---SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBE
T ss_pred cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc---cceeccccCceeecccceEcCCCCEEEEEecCCCCCceE
Confidence 332 355665 7676777777788875555444321 122333344556644 77888766554 444422 3
Q ss_pred EEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc
Q 009380 438 IGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN 480 (536)
Q Consensus 438 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs 480 (536)
|..-++..+.....+...... . ..+.|||++++++...
T Consensus 309 lY~v~~~~~~~~~~LT~~~~~--~---~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 309 LYRVSLDSGGEPKCLTCEDGD--H---YSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEEETTETTEEEESSTTSST--T---EEEEE-TTSSEEEEEE
T ss_pred EEEEEeCCCCCeEeccCCCCC--c---eEEEECCCCCEEEEEE
Confidence 555555512222233221111 1 4478999999876543
No 334
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.22 E-value=5.4e-07 Score=90.08 Aligned_cols=202 Identities=17% Similarity=0.171 Sum_probs=133.1
Q ss_pred CCCEEEEEEecCCC-CEEEEEECCCeEEEEECCCCe---EEEeecCCCceeEEEecCCCCCEEEEEE----CCCeEEEEE
Q 009380 282 LGPISGIVTQQYCL-SKIFTSCYDGLIRLMDAEKEV---FDLVYSSEYAVFSLSQQPNNVNTLYFGE----GQGGLNIWD 353 (536)
Q Consensus 282 ~~~V~~l~~~~~~~-~~l~s~s~dg~I~vwd~~~~~---~~~~~~~~~~i~~l~~~~~~~~~l~~g~----~dg~i~i~d 353 (536)
...+.|++++-+.. ..++.|..+|.|.+-.++... ...+-++..++++++|++-+.++|++|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34567777665542 578888899999998876532 3344567789999999998767888874 356799999
Q ss_pred CCCC--ccce--eEec-cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCC
Q 009380 354 VRSR--KSAT--EWLL-HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGS 427 (536)
Q Consensus 354 ~~~~--~~~~--~~~~-h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~ 427 (536)
+.++ .+.. .+.+ -.....++||..+. .++.+|...+.++++|+|... .....-.+..+..+..+| .++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~-----~~~~svnTk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSL-----DSVSSVNTKYVQGITVDPFSPN 209 (783)
T ss_pred cccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhh-----hhhhhhhhhhcccceecCCCCC
Confidence 9876 2222 2222 34556789999655 789999988999999999521 111112344667788899 778
Q ss_pred eEEEEeCCCcEEEEe-CCCCCc-ceEEeccCCCCceeeeeEEEEcCCCC-EEEEEcC-CCcEEEEcCC
Q 009380 428 SLATTSFDDTIGIWS-GVNFEN-TSMIHHNNQTGRWISSFRAIWGWDDS-CVFIGNM-TRTVEVISPA 491 (536)
Q Consensus 428 ~l~t~s~dg~I~iwd-~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs~-dg~I~v~d~~ 491 (536)
|+++.. ||.|.+|| .++.+. +..+.+... ...-..+.++|.|... .+++... .+.|+.|++.
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~N-~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQIILRNEN-KKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHHHHhhCCC-CcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 777665 99999999 444333 222322221 1122345577888532 3444444 4789999874
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.21 E-value=0.00083 Score=70.02 Aligned_cols=234 Identities=12% Similarity=0.105 Sum_probs=136.1
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCC-----EE-EEEEecCCCCEEEEEE---------CCCeEEEEECC
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGP-----IS-GIVTQQYCLSKIFTSC---------YDGLIRLMDAE 313 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~-----V~-~l~~~~~~~~~l~s~s---------~dg~I~vwd~~ 313 (536)
..++.++.+|.|.-+|..+ ++.+..+...... +. ...+. + ..++.++ .+|.|..+|..
T Consensus 111 ~~V~v~~~~g~v~AlD~~T----G~~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~ 183 (488)
T cd00216 111 RKVFFGTFDGRLVALDAET----GKQVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVE 183 (488)
T ss_pred CeEEEecCCCeEEEEECCC----CCEeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECC
Confidence 5778888899999999988 4555444332210 11 11222 1 3455553 46889999999
Q ss_pred CCeEEEeecCCC---------------------ce-eEEEecCCCCCEEEEEECCC------------------eEEEEE
Q 009380 314 KEVFDLVYSSEY---------------------AV-FSLSQQPNNVNTLYFGEGQG------------------GLNIWD 353 (536)
Q Consensus 314 ~~~~~~~~~~~~---------------------~i-~~l~~~~~~~~~l~~g~~dg------------------~i~i~d 353 (536)
+++....+.... .+ .+..+.+.+ ..+++++.++ .|.-+|
T Consensus 184 TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald 262 (488)
T cd00216 184 TGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALD 262 (488)
T ss_pred CCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEc
Confidence 988765543211 01 123333334 5788887665 799999
Q ss_pred CCCCccceeEec--cCC----CeEEEEEec----CC--CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEE
Q 009380 354 VRSRKSATEWLL--HEA----RINTIDFNP----RN--PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAY 421 (536)
Q Consensus 354 ~~~~~~~~~~~~--h~~----~i~~i~~~p----~~--~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~ 421 (536)
..+++.+..++. |.. ......+.+ ++ ..+++.++.+|.+...|.++++. .-.... ....+.
T Consensus 263 ~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~----~W~~~~---~~~~~~ 335 (488)
T cd00216 263 ADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL----ISARPE---VEQPMA 335 (488)
T ss_pred CCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE----eeEeEe---eccccc
Confidence 999998777652 211 000111111 12 12678888899999999999752 111110 011233
Q ss_pred EccCCCeEEEE------------------eCCCcEEEEeCCCCCcceEEeccCCC-----CceeeeeEEEEcCCCCEEEE
Q 009380 422 FSPSGSSLATT------------------SFDDTIGIWSGVNFENTSMIHHNNQT-----GRWISSFRAIWGWDDSCVFI 478 (536)
Q Consensus 422 ~sp~g~~l~t~------------------s~dg~I~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~g~~l~~ 478 (536)
.+| ..++.+ ..+|.|.-.|+.+++.+......... +..... ......+..|++
T Consensus 336 ~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~--~~~~~~g~~v~~ 411 (488)
T cd00216 336 YDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWG--GSLATAGNLVFA 411 (488)
T ss_pred cCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccC--cceEecCCeEEE
Confidence 333 222221 24677888898888877666432100 000000 000124578999
Q ss_pred EcCCCcEEEEcCCccccceeccC
Q 009380 479 GNMTRTVEVISPAQRRSVATLQS 501 (536)
Q Consensus 479 gs~dg~I~v~d~~~~~~~~~l~~ 501 (536)
++.||.|+.+|..+|+.+.+++.
T Consensus 412 g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 412 GAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred ECCCCeEEEEECCCCceeeEEEC
Confidence 99999999999999999888764
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=1.3e-05 Score=82.79 Aligned_cols=188 Identities=11% Similarity=0.090 Sum_probs=119.2
Q ss_pred EEEEEecCCCCEEEEEEC----CCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccce
Q 009380 286 SGIVTQQYCLSKIFTSCY----DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSAT 361 (536)
Q Consensus 286 ~~l~~~~~~~~~l~s~s~----dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~ 361 (536)
+-+.|+|.. .+|+.++. .|+|.||- ++|.+..-....-.++++||+|.. -.|+.|-.-|.+.+|...+.+.-.
T Consensus 19 ti~SWHPse-PlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSE-PLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccCCCC-ceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHH-HHHhhccccceeEEEecCCceeee
Confidence 345788887 78877764 57787774 334433333333456789999987 678888888999999988776655
Q ss_pred eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc--cCcee--EEEEccCCC------eEEE
Q 009380 362 EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSH--KRAVH--SAYFSPSGS------SLAT 431 (536)
Q Consensus 362 ~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~--~~~v~--~l~~sp~g~------~l~t 431 (536)
....|..+|..+.|+++| ..++++..-|.|.+|...... ......+..| ...++ +...++++. ..++
T Consensus 96 v~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~~g--~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaV 172 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDVIG--EIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAV 172 (1416)
T ss_pred eccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeeecc--ccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhc
Confidence 556899999999999988 799999999999999876422 1122222233 23333 444455532 2344
Q ss_pred EeCCCcEE-EEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380 432 TSFDDTIG-IWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 432 ~s~dg~I~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~ 492 (536)
++.+..+- .++.+.........+ .=.|+|..++.++.+|+|+..|-.+
T Consensus 173 tgDe~alD~~fnwk~~~a~rs~~k-------------sgv~~g~~F~~~~~~GtVyyvdq~g 221 (1416)
T KOG3617|consen 173 TGDESALDEPFNWKESLAERSDEK-------------SGVPKGTEFLFAGKSGTVYYVDQNG 221 (1416)
T ss_pred cCchhhhcccccCccchhhccccc-------------cCCCCCcEEEEEcCCceEEEEcCCC
Confidence 44444333 333221111111111 1146888889999999998887543
No 337
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.17 E-value=0.0015 Score=63.74 Aligned_cols=277 Identities=14% Similarity=0.086 Sum_probs=132.4
Q ss_pred EEEecCCcc-EEEEEeCCCc--EEEEECCCCCCCCCceEEeccCC-CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe
Q 009380 241 KFLPCSDVR-MVVAGSKLGN--ITFWNLDSQQDEDNGIYLFRTHL-GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV 316 (536)
Q Consensus 241 ~~~p~~~~~-~l~tg~~dg~--v~iwd~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~ 316 (536)
+|.+ +|+ +|+++..+|. +.+.|+.+ ..+..+.... .......+++++ +.++-...+..|+-.|+.+.+
T Consensus 42 ~ft~--dG~kllF~s~~dg~~nly~lDL~t-----~~i~QLTdg~g~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 42 CFTD--DGRKLLFASDFDGNRNLYLLDLAT-----GEITQLTDGPGDNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp -B-T--TS-EEEEEE-TTSS-EEEEEETTT------EEEE---SS-B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT--
T ss_pred CcCC--CCCEEEEEeccCCCcceEEEEccc-----CEEEECccCCCCCccceEEecCC-CeEEEEECCCeEEEEECCcCc
Confidence 4566 775 4555555654 55556664 2333333222 222345677887 777666667789999999988
Q ss_pred EEEeecCCCc-eeEEEecCCCCCEEEEEEC-----------------------CCeEEEEECCCCccceeEeccCCCeEE
Q 009380 317 FDLVYSSEYA-VFSLSQQPNNVNTLYFGEG-----------------------QGGLNIWDVRSRKSATEWLLHEARINT 372 (536)
Q Consensus 317 ~~~~~~~~~~-i~~l~~~~~~~~~l~~g~~-----------------------dg~i~i~d~~~~~~~~~~~~h~~~i~~ 372 (536)
...++..... +-...|..+.....++|.. .+.|...|+.+|+....+. -...+..
T Consensus 114 ~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH 192 (386)
T PF14583_consen 114 ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGH 192 (386)
T ss_dssp EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEE
T ss_pred EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccC
Confidence 7777765433 3345554222223333321 2346777888877543333 5678899
Q ss_pred EEEecCCCCEEEEEeC---CC-cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-----CCCcEEEEeC
Q 009380 373 IDFNPRNPNIMATSST---DG-TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-----FDDTIGIWSG 443 (536)
Q Consensus 373 i~~~p~~~~~l~s~s~---dg-~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-----~dg~I~iwd~ 443 (536)
+.|+|..+.+|+-|-+ +. .-+||-+++..... .++....-...+..=-|.|+|..|.--+ .+..|.-+|+
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-KKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-eeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 9999998888888764 22 13667665432111 1111112234556667999998665433 2445777888
Q ss_pred CCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC----------------cEEEEcCCccccceeccCC-----
Q 009380 444 VNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR----------------TVEVISPAQRRSVATLQSP----- 502 (536)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg----------------~I~v~d~~~~~~~~~l~~~----- 502 (536)
.+++....... .. +. ...-++||++++-=+.|. .|+++++..+... .+.-|
T Consensus 272 ~t~~~~~~~~~-p~---~~---H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~ 343 (386)
T PF14583_consen 272 DTGERRRLMEM-PW---CS---HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWK 343 (386)
T ss_dssp TT--EEEEEEE--S---EE---EEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE------
T ss_pred CCCCceEEEeC-Cc---ee---eeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcce
Confidence 87765432221 11 11 133478887766533332 4566777665432 11111
Q ss_pred ----ceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 503 ----YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 503 ----~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
+....-...+|+|.....|.+....|...||=+
T Consensus 344 v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 344 VLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp -BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 111112356788855455667778888888754
No 338
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.0025 Score=64.09 Aligned_cols=210 Identities=13% Similarity=0.125 Sum_probs=144.0
Q ss_pred EEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEEC---CCeEEEEECCCCccce
Q 009380 285 ISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEG---QGGLNIWDVRSRKSAT 361 (536)
Q Consensus 285 V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~---dg~i~i~d~~~~~~~~ 361 (536)
-..++.++.+...+++...++.|.+.|..+...............+++.+++ ..++++.. ++.+.+.|-.+++.+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~-~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDG-KYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCC-CEEEEEecccCCceEEEEeCCCCeEEE
Confidence 4577888888445666666799999998877766666555578899999998 45555544 6899999999988877
Q ss_pred eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC---CcE
Q 009380 362 EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD---DTI 438 (536)
Q Consensus 362 ~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d---g~I 438 (536)
....-..+ ..+++.|++...+++-..++.|.+.|................-......+.++|+|.++.+.... +.+
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 75533334 88999999965666666789999999776421100111112333455779999999976665544 589
Q ss_pred EEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-CcEEEEcCCccccceecc
Q 009380 439 GIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-RTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 439 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-g~I~v~d~~~~~~~~~l~ 500 (536)
...|..++........ .+.. ....+..+|+|.++.+.... +.+.+.|..+......+.
T Consensus 234 ~~id~~~~~v~~~~~~---~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 234 LKIDTATGNVTATDLP---VGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred EEEeCCCceEEEeccc---cccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 9999877665544211 1111 11225578999998888544 889999998876665544
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=0.00013 Score=75.70 Aligned_cols=110 Identities=17% Similarity=0.117 Sum_probs=83.3
Q ss_pred ecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCC
Q 009380 190 KDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQ 269 (536)
Q Consensus 190 ~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~ 269 (536)
.+.|...+++.. .++-...|.|.||--..+|..- -.-+-.+++++||| ..-.|+.|-.-|.+.+|...+
T Consensus 22 SWHPsePlfAVA------~fS~er~GSVtIfadtGEPqr~-Vt~P~hatSLCWHp--e~~vLa~gwe~g~~~v~~~~~-- 90 (1416)
T KOG3617|consen 22 SWHPSEPLFAVA------SFSPERGGSVTIFADTGEPQRD-VTYPVHATSLCWHP--EEFVLAQGWEMGVSDVQKTNT-- 90 (1416)
T ss_pred ccCCCCceeEEE------EecCCCCceEEEEecCCCCCcc-cccceehhhhccCh--HHHHHhhccccceeEEEecCC--
Confidence 466777776632 2244566788888644443321 22245678899999 888889998899999999886
Q ss_pred CCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 270 DEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 270 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
.+.-.....|..+|..+.|+++| +.++|+..-|.|.+|...
T Consensus 91 --~e~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 91 --TETHTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred --ceeeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence 44555567899999999999999 999999999999999865
No 340
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00022 Score=72.10 Aligned_cols=195 Identities=11% Similarity=0.067 Sum_probs=119.7
Q ss_pred eEEeccCCCCEEEEEEecCCCCEEEEEECC---CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCe--E
Q 009380 275 IYLFRTHLGPISGIVTQQYCLSKIFTSCYD---GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG--L 349 (536)
Q Consensus 275 ~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~--i 349 (536)
...+..-...+..-.|+|++..+.+..-.. ..+.++|++++....+....+.-..-+|+|++..++++...||. |
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 333444445667778999984433332222 35999999998877777777777788999999767777777775 5
Q ss_pred EEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE--eCCCCCCCCCCcceeecccCceeEEEEccCCC
Q 009380 350 NIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIW--DLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS 427 (536)
Q Consensus 350 ~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw--dl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 427 (536)
+++|+..+.. ..+....+.-..=.|+|+|..++.+.+..|.-.|| |+... ...........-..-.|+|+|+
T Consensus 265 y~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-----~~~riT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 265 YLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-----QVTRLTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred EEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC-----ceeEeeccCCCCcCccCCCCCC
Confidence 6667776663 33442223333568999998777777777765555 44432 2222222222223788999999
Q ss_pred eEEEEeCC-Cc--EEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC
Q 009380 428 SLATTSFD-DT--IGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM 481 (536)
Q Consensus 428 ~l~t~s~d-g~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~ 481 (536)
+|+..+.. |. |.++|+.++.....+...... -...|.++|..++..+.
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~------e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILTSTYLN------ESPSWAPNGRMIMFSSG 389 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEccccccC------CCCCcCCCCceEEEecc
Confidence 99887753 44 666776655543333211111 11457788877665543
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.10 E-value=0.00034 Score=71.48 Aligned_cols=155 Identities=10% Similarity=0.058 Sum_probs=104.5
Q ss_pred cceeeeecCCCCcccccccccccccccccccceEEecccccCccccccc--cCCceEEEEEEecCCccEEEEEeCCCcEE
Q 009380 184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARI--MPGRITQMKFLPCSDVRMVVAGSKLGNIT 261 (536)
Q Consensus 184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~--~~~~I~~v~~~p~~~~~~l~tg~~dg~v~ 261 (536)
..|..-.++..+++++- +..-|.++||+-........+. -.+.+..+..|+ +..++|+|+..|.|.
T Consensus 34 ~~v~lTc~dst~~~l~~----------GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~--~e~lvAagt~~g~V~ 101 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAM----------GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS--VEYLVAAGTASGRVS 101 (726)
T ss_pred ceEEEEEeecCCceEEE----------ecccceEEEEecCchhhhcccccCccceEEEEEecc--hhHhhhhhcCCceEE
Confidence 34444555556666662 3455788888866554444333 456677778888 788999999999999
Q ss_pred EEECCCCCCCCCceEE---eccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC-----eEEEeecCCCceeEEEec
Q 009380 262 FWNLDSQQDEDNGIYL---FRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE-----VFDLVYSSEYAVFSLSQQ 333 (536)
Q Consensus 262 iwd~~~~~~~~~~~~~---~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~-----~~~~~~~~~~~i~~l~~~ 333 (536)
++.+..... ...... -+.|...|++++|++++ ..|++|...|.|.+-.+... ....+...++.|..+++.
T Consensus 102 v~ql~~~~p-~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 102 VFQLNKELP-RDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred eehhhccCC-CcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 999886322 222221 12478899999999999 99999999999999888772 234455667888888887
Q ss_pred CCCCCEEEEEECCCeEEEEECCC
Q 009380 334 PNNVNTLYFGEGQGGLNIWDVRS 356 (536)
Q Consensus 334 ~~~~~~l~~g~~dg~i~i~d~~~ 356 (536)
.. +|++++.- .-.+++++.
T Consensus 180 q~---~LLVStl~-r~~Lc~tE~ 198 (726)
T KOG3621|consen 180 QS---YLLVSTLT-RCILCQTEA 198 (726)
T ss_pred cc---eehHhhhh-hhheeecch
Confidence 53 44444433 234445443
No 342
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=98.07 E-value=0.016 Score=58.03 Aligned_cols=278 Identities=14% Similarity=0.145 Sum_probs=152.5
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec---CCCCEEEEEECCCeEEEEECCC--C------
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ---YCLSKIFTSCYDGLIRLMDAEK--E------ 315 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~~l~s~s~dg~I~vwd~~~--~------ 315 (536)
+...|++|+..|.++||+..........+..-..-..+|..+..-. ......++.-.-..+.||.+.. +
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 4578999999999999999654322222333334467888887643 2223344445677788888732 1
Q ss_pred --eEEEeecCC--CceeEEEecCCC----CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380 316 --VFDLVYSSE--YAVFSLSQQPNN----VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 316 --~~~~~~~~~--~~i~~l~~~~~~----~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s 387 (536)
.+...+.|. .....+++-|-| ..++++-+.||.+.+|+-+.-...+.+.. ---...+++.+.- ..|++++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~t-Dsfvt~s 193 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRT-DSFVTAS 193 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecC-CEEEEec
Confidence 233444443 444555554432 36899999999999999665432223321 1222346777754 6888888
Q ss_pred CCCcEEEEeCCCCCCC------------------CCCcceeecccCceeE---EEEccCCCeEEEEeCCCcEEEEeCCCC
Q 009380 388 TDGTACIWDLRSMATD------------------KPEPMKVLSHKRAVHS---AYFSPSGSSLATTSFDDTIGIWSGVNF 446 (536)
Q Consensus 388 ~dg~i~iwdl~~~~~~------------------~~~~~~~~~~~~~v~~---l~~sp~g~~l~t~s~dg~I~iwd~~~~ 446 (536)
.+..|..|........ ...+.-.+.-...+.. +.++.....|++-+ ..++.+.+. ++
T Consensus 194 ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~G 271 (418)
T PF14727_consen 194 SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-NG 271 (418)
T ss_pred CceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-CC
Confidence 8888998876432110 0001111112223333 33333333344444 345666664 34
Q ss_pred CcceEEeccCCCCceeeeeEEEEcCCC---CEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEE
Q 009380 447 ENTSMIHHNNQTGRWISSFRAIWGWDD---SCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG 523 (536)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~s~~g---~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las 523 (536)
......+. .-...+...+...+..++ ..+++++.++.+.||.-.+ .++.-...+..+ ...++..+.-..+|++
T Consensus 272 ~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~l~~~PV-al~v~~~~~~~G~IV~ 347 (418)
T PF14727_consen 272 SLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQLPHVPV-ALSVANFNGLKGLIVS 347 (418)
T ss_pred eEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecCCCCCCE-EEEecccCCCCceEEE
Confidence 33333332 222223333444233332 2588999999999997544 333333323222 2333333333479999
Q ss_pred EccCCeEEE
Q 009380 524 ATGGGQVYV 532 (536)
Q Consensus 524 gs~Dg~v~i 532 (536)
-+.+|.|.+
T Consensus 348 Ls~~G~L~v 356 (418)
T PF14727_consen 348 LSDEGQLSV 356 (418)
T ss_pred EcCCCcEEE
Confidence 999999876
No 343
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.0083 Score=60.37 Aligned_cols=241 Identities=12% Similarity=0.082 Sum_probs=143.1
Q ss_pred CEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC-CceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee
Q 009380 284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE-YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE 362 (536)
Q Consensus 284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~-~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~ 362 (536)
....+...+++....++-.....+...+............. .....++.++.+.+..+....+..|.+.|..+......
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 45567788887333333333335555555532222222222 44567788888855666666678999999887776666
Q ss_pred EeccCCCeEEEEEecCCCCEEEEEe--CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEE
Q 009380 363 WLLHEARINTIDFNPRNPNIMATSS--TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIG 439 (536)
Q Consensus 363 ~~~h~~~i~~i~~~p~~~~~l~s~s--~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~ 439 (536)
...- .....+.+.|++..+.++-. .++++.+.|-.+.+ .......-..+ ..++++|+|..++++. .++.|.
T Consensus 112 ~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~----~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~ 185 (381)
T COG3391 112 IPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK----VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVS 185 (381)
T ss_pred eeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe----EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEE
Confidence 5522 26678999998866555555 36888888887753 22222222233 8899999999666655 788999
Q ss_pred EEeCCCCCcce-EEeccCCCCceeeeeEEEEcCCCCEEEEEcCC---CcEEEEcCCccccceeccCCceeeeeeeEeecC
Q 009380 440 IWSGVNFENTS-MIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT---RTVEVISPAQRRSVATLQSPYISAIPCRFHAHP 515 (536)
Q Consensus 440 iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d---g~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p 515 (536)
++|........ ........+. ....+.++++|.++.+.... +.+.+.|..++.....-...... .+..+..+|
T Consensus 186 vi~~~~~~v~~~~~~~~~~~~~--~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p 262 (381)
T COG3391 186 VIDTSGNSVVRGSVGSLVGVGT--GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDP 262 (381)
T ss_pred EEeCCCcceeccccccccccCC--CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECC
Confidence 99976554442 1000011111 11226689999977666544 58999999888666552211221 223456667
Q ss_pred CCCCEEEEEc-cCCeEEEEe
Q 009380 516 HQVGTLAGAT-GGGQVYVWT 534 (536)
Q Consensus 516 ~~~~~lasgs-~Dg~v~iW~ 534 (536)
++..+.+.. ..+.|.+-|
T Consensus 263 -~g~~~yv~~~~~~~V~vid 281 (381)
T COG3391 263 -AGKAAYVANSQGGTVSVID 281 (381)
T ss_pred -CCCEEEEEecCCCeEEEEe
Confidence 456665553 335555443
No 344
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.98 E-value=0.013 Score=56.26 Aligned_cols=228 Identities=14% Similarity=0.127 Sum_probs=129.6
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-------
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL------- 319 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~------- 319 (536)
.++.|+.|+.+| |.++++... ....... +...|..+...+.- +.|++-+ |+.+.++++..-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~---~~~~~i~--~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDP---SKPTRIL--KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCC---ccceeEe--ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccc
Confidence 678999999888 999999331 2222222 22339999999987 6666665 6999999987532222
Q ss_pred --------eecCCCceeEEE--ecCCCCCEEEEEECCCeEEEEECCCC-----ccceeEeccCCCeEEEEEecCCCCEEE
Q 009380 320 --------VYSSEYAVFSLS--QQPNNVNTLYFGEGQGGLNIWDVRSR-----KSATEWLLHEARINTIDFNPRNPNIMA 384 (536)
Q Consensus 320 --------~~~~~~~i~~l~--~~~~~~~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~h~~~i~~i~~~p~~~~~l~ 384 (536)
.......+..++ -...+...|+++... .|.+|..... +....+. -...+.+++|.+ +.++
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~---~~i~ 152 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG---NKIC 152 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC---CEEE
Confidence 122233444444 223333455555544 8888887653 3344554 458889999994 4677
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCcceeec----------ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcce--EE
Q 009380 385 TSSTDGTACIWDLRSMATDKPEPMKVLS----------HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTS--MI 452 (536)
Q Consensus 385 s~s~dg~i~iwdl~~~~~~~~~~~~~~~----------~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~--~~ 452 (536)
.|..+ ...+.|+.++... ....... ...++..+... ++.+|++ .|..-.+.|. .+++.. .+
T Consensus 153 v~~~~-~f~~idl~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~--~~~~g~fv~~-~G~~~r~~~i 225 (275)
T PF00780_consen 153 VGTSK-GFYLIDLNTGSPS--ELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC--YDNIGVFVNK-NGEPSRKSTI 225 (275)
T ss_pred EEeCC-ceEEEecCCCCce--EEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE--ecceEEEEcC-CCCcCcccEE
Confidence 77644 4888999975421 1110011 11233333333 4555553 3443334443 443333 22
Q ss_pred eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCc
Q 009380 453 HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY 503 (536)
Q Consensus 453 ~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~ 503 (536)
..... ... +.+ ...||++.+. +.|.||++.+++.++.+....
T Consensus 226 ~W~~~----p~~--~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 226 QWSSA----PQS--VAY--SSPYLIAFSS-NSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EcCCc----hhE--EEE--ECCEEEEECC-CEEEEEECcCCcEEEEEECCC
Confidence 22211 111 222 2347777665 459999999999988887543
No 345
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.94 E-value=0.0047 Score=57.45 Aligned_cols=194 Identities=14% Similarity=0.194 Sum_probs=110.7
Q ss_pred ccCCceEEEEEEecCC-ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC-CCCEEEEEEecCCCCEEEEEECCCeEEE
Q 009380 232 IMPGRITQMKFLPCSD-VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH-LGPISGIVTQQYCLSKIFTSCYDGLIRL 309 (536)
Q Consensus 232 ~~~~~I~~v~~~p~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~l~s~s~dg~I~v 309 (536)
+....++.+.|.| + +.++++....+.|..++.+ +..+..+.-. .+-.-.|++..++ .++++.-.++.+.+
T Consensus 19 g~~~e~SGLTy~p--d~~tLfaV~d~~~~i~els~~-----G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 19 GILDELSGLTYNP--DTGTLFAVQDEPGEIYELSLD-----GKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYI 90 (248)
T ss_dssp T--S-EEEEEEET--TTTEEEEEETTTTEEEEEETT-------EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEE
T ss_pred CccCCccccEEcC--CCCeEEEEECCCCEEEEEcCC-----CCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEE
Confidence 3445599999999 5 4567777777888777765 4555554333 2457889998776 55555556899999
Q ss_pred EECCCC--e--E---EE-e--e--cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC---CccceeE--------ecc
Q 009380 310 MDAEKE--V--F---DL-V--Y--SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS---RKSATEW--------LLH 366 (536)
Q Consensus 310 wd~~~~--~--~---~~-~--~--~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~---~~~~~~~--------~~h 366 (536)
+++... . . .. . . .++..+-.++|.+.+ +.|+++-...-..+|.+.. ...+... ...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 988431 1 1 11 1 1 244678999999988 5666666665666666653 2111111 123
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec-----c-----cCceeEEEEccCCCeEEEEeCCC
Q 009380 367 EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-----H-----KRAVHSAYFSPSGSSLATTSFDD 436 (536)
Q Consensus 367 ~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~-----~-----~~~v~~l~~sp~g~~l~t~s~dg 436 (536)
...+.+++++|..+++++.+..+..|.++|.. + .+..... | -...-.|+|.++|++. ..+.-+
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G-----~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpN 242 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-G-----RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPN 242 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-TT--------EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTT
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEECCC-C-----CEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCc
Confidence 45688999999887888888889999999944 3 2322221 1 1356789999999744 445555
Q ss_pred cEEEE
Q 009380 437 TIGIW 441 (536)
Q Consensus 437 ~I~iw 441 (536)
..++|
T Consensus 243 lfy~f 247 (248)
T PF06977_consen 243 LFYRF 247 (248)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 55544
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.92 E-value=0.0019 Score=64.74 Aligned_cols=209 Identities=10% Similarity=0.114 Sum_probs=119.8
Q ss_pred CEEEEEEecCCCCEEEEEECCCeEEEEECCCCe--------------------------E------------------EE
Q 009380 284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV--------------------------F------------------DL 319 (536)
Q Consensus 284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~--------------------------~------------------~~ 319 (536)
.|+.+.|.++. .-|+.+...|.|.+|.....+ + ..
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 47889999987 788999999999888653210 0 01
Q ss_pred eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe--c------cCCCeEEEEEec----CCC---CEEE
Q 009380 320 VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--L------HEARINTIDFNP----RNP---NIMA 384 (536)
Q Consensus 320 ~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~------h~~~i~~i~~~p----~~~---~~l~ 384 (536)
+....++|++++.+.-| ++++|..+|.+.|.|+|.+..++.-. . ....|+++.|.- ++. -+++
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 11235789999998665 99999999999999999887766532 1 234688888862 111 3788
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCcce---e-ecccCceeEEE-EccC-C-------------------CeEEEEeCCCcEE
Q 009380 385 TSSTDGTACIWDLRSMATDKPEPMK---V-LSHKRAVHSAY-FSPS-G-------------------SSLATTSFDDTIG 439 (536)
Q Consensus 385 s~s~dg~i~iwdl~~~~~~~~~~~~---~-~~~~~~v~~l~-~sp~-g-------------------~~l~t~s~dg~I~ 439 (536)
+|...|.+.+|.+--... ...... . ..+...|..+. |+.+ | +-++..+.+..++
T Consensus 160 vGTn~G~v~~fkIlp~~~-g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSN-GRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEETTSEEEEEEEEE-GG-G-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEeCCCCEEEEEEecCCC-CceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 899999999998752110 111111 1 13556665555 3221 1 1234444467799
Q ss_pred EEeCCCCCcceEEeccCCCCceeeeeEEEE-----cCCCCEEEEEcCCCcEEEEcCCccccceeccC
Q 009380 440 IWSGVNFENTSMIHHNNQTGRWISSFRAIW-----GWDDSCVFIGNMTRTVEVISPAQRRSVATLQS 501 (536)
Q Consensus 440 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~ 501 (536)
|+...+.+..+... . . ...+-.+.+ ...+..|++-..+|.|++|.+..-+.+..+..
T Consensus 239 v~~~~~~k~~~K~~-~--~--~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 239 VFKPPKSKGAHKSF-D--D--PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp EE-TT---EEEEE--S--S---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred EEeCCCCcccceee-c--c--ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 99988776655443 1 1 111111222 23466788889999999999999888777654
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.89 E-value=0.013 Score=59.54 Aligned_cols=174 Identities=14% Similarity=0.092 Sum_probs=96.9
Q ss_pred cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC---CCc-----eeEE
Q 009380 259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS---EYA-----VFSL 330 (536)
Q Consensus 259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~---~~~-----i~~l 330 (536)
.|.||+.. +..+..+.--.+.|.++.|..+ ..|+....||.++++|+.... ....+. ... +...
T Consensus 62 ~I~iys~s-----G~ll~~i~w~~~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~ 133 (410)
T PF04841_consen 62 SIQIYSSS-----GKLLSSIPWDSGRIVGMGWTDD--EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAI 133 (410)
T ss_pred EEEEECCC-----CCEeEEEEECCCCEEEEEECCC--CeEEEEEcCCEEEEEeCCCce-eechhhhccccCccccccccc
Confidence 48888887 4555554433488999999885 577788899999999997544 221111 112 2222
Q ss_pred EecCCCCCEEEEEECCCeEEEEECCCCc-cceeEe---c-----cCC-CeEE-EEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380 331 SQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWL---L-----HEA-RINT-IDFNPRNPNIMATSSTDGTACIWDLRS 399 (536)
Q Consensus 331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~---~-----h~~-~i~~-i~~~p~~~~~l~s~s~dg~i~iwdl~~ 399 (536)
.+..+| +++-+.++.+.+..--... ....+. . +.. .... ..+..+. ...+....++.+.+.+-..
T Consensus 134 ~~~~~G---ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~ 209 (410)
T PF04841_consen 134 WFYKNG---IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENS 209 (410)
T ss_pred ccCCCC---EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEccc
Confidence 333344 3333455555555322211 111110 0 000 0111 2233333 3344444455666444332
Q ss_pred CCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE
Q 009380 400 MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI 452 (536)
Q Consensus 400 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~ 452 (536)
.+ . ....+++..++.||+|++||.-..+|.+.+.+..-.+....+
T Consensus 210 ~~-------~-i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~ 254 (410)
T PF04841_consen 210 FK-------Q-IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF 254 (410)
T ss_pred cc-------c-ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence 11 0 223468999999999999999999999999886544444444
No 348
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.88 E-value=0.00049 Score=70.99 Aligned_cols=188 Identities=12% Similarity=0.040 Sum_probs=114.3
Q ss_pred eeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCC----cEEEE
Q 009380 188 TCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLG----NITFW 263 (536)
Q Consensus 188 ~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg----~v~iw 263 (536)
.+++++||+.+.. .....+.+...|.........-...+.-..++++| +|.++++.+.+. ++..-
T Consensus 197 ~~PlpnDGk~l~~---------~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp--dGk~afvTsyNsE~G~tl~em 265 (635)
T PRK02888 197 RIPLPNDGKDLDD---------PKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY--DGKYAFSTCYNSEEGVTLAEM 265 (635)
T ss_pred ccccCCCCCEeec---------ccceeEEEEEEECccceEEEEEEeCCCcccceECC--CCCEEEEeccCcccCcceeee
Confidence 4567777775532 24455666666654321111111245566788888 888888776422 22222
Q ss_pred ECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-----CeEEEeecCCCceeEEEecCCCCC
Q 009380 264 NLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-----EVFDLVYSSEYAVFSLSQQPNNVN 338 (536)
Q Consensus 264 d~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-----~~~~~~~~~~~~i~~l~~~~~~~~ 338 (536)
+..+ ...+..|..-. + -.+.++| ++... .++.|.+.|..+ ...............+.++|++..
T Consensus 266 ~a~e----~d~~vvfni~~--i--ea~vkdG-K~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGky 334 (635)
T PRK02888 266 MAAE----RDWVVVFNIAR--I--EEAVKAG-KFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKY 334 (635)
T ss_pred cccc----CceEEEEchHH--H--HHhhhCC-CEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCE
Confidence 2211 11111111000 0 0234466 55554 367899999988 456666677788899999999955
Q ss_pred EEEEEECCCeEEEEECCCCcc------------ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380 339 TLYFGEGQGGLNIWDVRSRKS------------ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS 399 (536)
Q Consensus 339 ~l~~g~~dg~i~i~d~~~~~~------------~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~ 399 (536)
+++++..+.+|.++|+.+.+. +.+... ...-...+|.++| +...|-..|..|..|++..
T Consensus 335 lyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 335 FIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 555666789999999987553 233332 2233457888877 6888888899999999876
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.84 E-value=0.0043 Score=61.00 Aligned_cols=215 Identities=13% Similarity=0.144 Sum_probs=117.2
Q ss_pred CeEEEEECCCCeEEEee--cCCCceeEEEe---cCC---CCCEEEEEEC---------C-CeEEEEECCCC----cccee
Q 009380 305 GLIRLMDAEKEVFDLVY--SSEYAVFSLSQ---QPN---NVNTLYFGEG---------Q-GGLNIWDVRSR----KSATE 362 (536)
Q Consensus 305 g~I~vwd~~~~~~~~~~--~~~~~i~~l~~---~~~---~~~~l~~g~~---------d-g~i~i~d~~~~----~~~~~ 362 (536)
+.|++.|..+......+ .....+.+++. ..+ ...+|++|+. . |.|.+|++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35777777665443322 23344554443 222 1367887764 2 89999999884 12222
Q ss_pred E--eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC--ceeEEEEccCCCeEEEEeCCCcE
Q 009380 363 W--LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR--AVHSAYFSPSGSSLATTSFDDTI 438 (536)
Q Consensus 363 ~--~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~--~v~~l~~sp~g~~l~t~s~dg~I 438 (536)
+ ....++|++|+-.. + . |+++. .+.|.+|++...+ .......+.. .+.++.. .+++|++|.....+
T Consensus 82 i~~~~~~g~V~ai~~~~-~-~-lv~~~-g~~l~v~~l~~~~----~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv 151 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFN-G-R-LVVAV-GNKLYVYDLDNSK----TLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSV 151 (321)
T ss_dssp EEEEEESS-EEEEEEET-T-E-EEEEE-TTEEEEEEEETTS----SEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSE
T ss_pred EEEEeecCcceEhhhhC-C-E-EEEee-cCEEEEEEccCcc----cchhhheecceEEEEEEec--cccEEEEEEcccCE
Confidence 2 24578899998873 3 4 44444 4789999998743 2333333333 4555544 46799999988888
Q ss_pred EEEeCCC-CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc-------cc-cceeccCCceeeeee
Q 009380 439 GIWSGVN-FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ-------RR-SVATLQSPYISAIPC 509 (536)
Q Consensus 439 ~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~-------~~-~~~~l~~~~~~~~~~ 509 (536)
.++..+. ...+..+... ....++.. +.+-.+++.++++..+|.|.++.... +. .+......|.+....
T Consensus 152 ~~~~~~~~~~~l~~va~d-~~~~~v~~--~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~ 228 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARD-YQPRWVTA--AEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVN 228 (321)
T ss_dssp EEEEEETTTE-EEEEEEE-SS-BEEEE--EEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EE
T ss_pred EEEEEEccCCEEEEEEec-CCCccEEE--EEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccc
Confidence 8885543 2223333322 22344444 55654556999999999999987753 11 222222212222223
Q ss_pred eE---eecCC--CC-----CEEEEEccCCeEEE
Q 009380 510 RF---HAHPH--QV-----GTLAGATGGGQVYV 532 (536)
Q Consensus 510 ~~---~~~p~--~~-----~~lasgs~Dg~v~i 532 (536)
.+ +..|. +. ..++.++.+|.|.+
T Consensus 229 ~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 229 SFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 33 43441 21 24888889998874
No 350
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.84 E-value=0.0036 Score=67.17 Aligned_cols=141 Identities=11% Similarity=0.064 Sum_probs=95.9
Q ss_pred CEEEEE-ECCCeEEEEECCCCeEEEeecCCCceeEEEecCCC------CCEEEEEECCCeEEEEECCCCc--ccee-Ee-
Q 009380 296 SKIFTS-CYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNN------VNTLYFGEGQGGLNIWDVRSRK--SATE-WL- 364 (536)
Q Consensus 296 ~~l~s~-s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~------~~~l~~g~~dg~i~i~d~~~~~--~~~~-~~- 364 (536)
++|+.- .....|+-.|++.|+++.-......+.-..+.|+. +...++|-.+..|..||.|-.. ++.. ..
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 444443 34678999999999988776554433333444431 2456778888899999999643 2211 11
Q ss_pred -ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeC
Q 009380 365 -LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG 443 (536)
Q Consensus 365 -~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~ 443 (536)
.......|++-..+| +||+|+.+|.|++||- .+. .....+.+...+|.+|..+.||++|++.|. ..|.|++.
T Consensus 574 Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~---~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGK---RAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred cccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cch---hhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 234557788877765 7999999999999993 332 123334467899999999999999888774 55777774
No 351
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.83 E-value=0.012 Score=56.52 Aligned_cols=269 Identities=11% Similarity=0.084 Sum_probs=147.6
Q ss_pred ceEEecccccCccccccccCCceEEEEEEecCCccEEEEEe----------CCCcEEEEECCCCCCCCCceEEe--cc-C
Q 009380 215 SCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGS----------KLGNITFWNLDSQQDEDNGIYLF--RT-H 281 (536)
Q Consensus 215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~--~~-h 281 (536)
+.+.+.|.+... ..-..-.+-.-.+..+| +++.+.+++ ..-.|.+||..+. .....+ .. |
T Consensus 17 ~rv~viD~d~~k-~lGmi~~g~~~~~~~sp--dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL----~~~~EI~iP~k~ 89 (342)
T PF06433_consen 17 SRVYVIDADSGK-LLGMIDTGFLGNVALSP--DGKTIYVAETFYSRGTRGERTDVVEIWDTQTL----SPTGEIEIPPKP 89 (342)
T ss_dssp EEEEEEETTTTE-EEEEEEEESSEEEEE-T--TSSEEEEEEEEEEETTEEEEEEEEEEEETTTT----EEEEEEEETTS-
T ss_pred ceEEEEECCCCc-EEEEeecccCCceeECC--CCCEEEEEEEEEeccccccceeEEEEEecCcC----cccceEecCCcc
Confidence 467777753321 11122234455677888 888887642 3346899999873 222211 11 1
Q ss_pred C----CCEEEEEEecCCCCEEEEEE--CCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC
Q 009380 282 L----GPISGIVTQQYCLSKIFTSC--YDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR 355 (536)
Q Consensus 282 ~----~~V~~l~~~~~~~~~l~s~s--~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~ 355 (536)
. .....+.++.++ ++++..- --.+|.|-|+..+++.......+...- .|.++.-+.+-|.||.+..+.+.
T Consensus 90 R~~~~~~~~~~~ls~dg-k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~i---yP~~~~~F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADG-KFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLI---YPSGNRGFSMLCGDGSLLTVTLD 165 (342)
T ss_dssp B--BS--GGGEEE-TTS-SEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEE---EEEETTEEEEEETTSCEEEEEET
T ss_pred hheecccccceEEccCC-cEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEE---EecCCCceEEEecCCceEEEEEC
Confidence 1 112345677777 7666553 346688888888887766655543332 33344568899999999999988
Q ss_pred -CCccceeEe----ccCCCe-EEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec--------ccCceeEEE
Q 009380 356 -SRKSATEWL----LHEARI-NTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS--------HKRAVHSAY 421 (536)
Q Consensus 356 -~~~~~~~~~----~h~~~i-~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~--------~~~~v~~l~ 421 (536)
.|+...+.. .-.+++ ..-.+...+ ..++--+.+|.|+-.|+............+.. -.+.-.-++
T Consensus 166 ~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A 244 (342)
T PF06433_consen 166 ADGKEAQKSTKVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA 244 (342)
T ss_dssp STSSEEEEEEEESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE
T ss_pred CCCCEeEeeccccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee
Confidence 455432211 111222 122333333 34555678899999888764311111111110 123445578
Q ss_pred EccCCCeEEEEe---CCC-------cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC-EEEEE-cCCCcEEEEc
Q 009380 422 FSPSGSSLATTS---FDD-------TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS-CVFIG-NMTRTVEVIS 489 (536)
Q Consensus 422 ~sp~g~~l~t~s---~dg-------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g-s~dg~I~v~d 489 (536)
+++..+.|++-- .++ .|-+||+.+.+.+..+..... +.. +..+.+.+ +|++. ..++.+.+||
T Consensus 245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~----~~S--i~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP----IDS--IAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE----ESE--EEEESSSS-EEEEEETTTTEEEEEE
T ss_pred eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc----cce--EEEccCCCcEEEEEcCCCCeEEEEe
Confidence 887554444421 122 388889999888888754322 223 33355543 55544 4578999999
Q ss_pred CCccccceeccC
Q 009380 490 PAQRRSVATLQS 501 (536)
Q Consensus 490 ~~~~~~~~~l~~ 501 (536)
..+|+.+..+..
T Consensus 319 ~~tGk~~~~~~~ 330 (342)
T PF06433_consen 319 AATGKLVRSIEQ 330 (342)
T ss_dssp TTT--EEEEE--
T ss_pred CcCCcEEeehhc
Confidence 999999888764
No 352
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.00066 Score=68.60 Aligned_cols=188 Identities=19% Similarity=0.205 Sum_probs=116.8
Q ss_pred CCceEEEEEEecCCccEEEEEe---CC-CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe--E
Q 009380 234 PGRITQMKFLPCSDVRMVVAGS---KL-GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL--I 307 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~---~d-g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~--I 307 (536)
...+..-+|+| ++..++.-+ .. ..+.++++.++. ...+..+.++.. .-.|+|+|..++++...||. |
T Consensus 192 ~~~~~~p~ws~--~~~~~~y~~f~~~~~~~i~~~~l~~g~--~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 192 GSLILTPAWSP--DGKKLAYVSFELGGCPRIYYLDLNTGK--RPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred CcceeccccCc--CCCceEEEEEecCCCceEEEEeccCCc--cceeeccCCccC---CccCCCCCCEEEEEECCCCCccE
Confidence 55677789999 776655442 22 358899998754 344555555543 56899999666667777776 4
Q ss_pred EEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCe--EEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEE
Q 009380 308 RLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG--LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMAT 385 (536)
Q Consensus 308 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~--i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s 385 (536)
.++|+.++....+....+.-..=.|+|+|..++++.+..|. |.++|+..+.. ..+......-..-.|+|+|..++..
T Consensus 265 y~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 265 YLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFE 343 (425)
T ss_pred EEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEE
Confidence 55577776655544444444467899999655566555664 55666655543 3333333333377899999655555
Q ss_pred EeCCCc--EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC
Q 009380 386 SSTDGT--ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF 434 (536)
Q Consensus 386 ~s~dg~--i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~ 434 (536)
...+|. |.+.|+.++. . .....+......-.|.|+|..+...+.
T Consensus 344 ~~~~g~~~i~~~~~~~~~----~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 344 SSSGGQWDIDKNDLASGG----K-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred eccCCceeeEEeccCCCC----c-EEEccccccCCCCCcCCCCceEEEecc
Confidence 533455 6666666542 1 444455556667778888877665553
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.81 E-value=0.013 Score=54.52 Aligned_cols=207 Identities=8% Similarity=0.050 Sum_probs=107.9
Q ss_pred EeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC
Q 009380 277 LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR 355 (536)
Q Consensus 277 ~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~ 355 (536)
.+.+-...++.|+|+|+...++++....+.|..++.+......+ +...+..-.|++..++ .++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEEEe
Confidence 44455567999999998746677777788898888764433322 2234678889998665 444444458899999984
Q ss_pred CCcc------ceeEe-----ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc--ee------ecccCc
Q 009380 356 SRKS------ATEWL-----LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM--KV------LSHKRA 416 (536)
Q Consensus 356 ~~~~------~~~~~-----~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~--~~------~~~~~~ 416 (536)
.... ...+. .+...+-.++|.|.+..++ .+-...-..||.++.... ..... .. ......
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPG-GFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT--SS--EEEE-HHHH-HT--SS-
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccC-ccceeeccccccccccceecc
Confidence 3211 12222 2445689999999775444 455555666776654110 00111 00 113456
Q ss_pred eeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC----CceeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380 417 VHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT----GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488 (536)
Q Consensus 417 v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~ 488 (536)
+.+++++| .+++++.+..+..|.++| .+++.+..+...... ......=-++|+++|.+.+++ .-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 78999999 567777777888899999 566665555422210 011111226788888655554 44444443
No 354
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.81 E-value=0.0048 Score=61.56 Aligned_cols=258 Identities=11% Similarity=0.098 Sum_probs=131.4
Q ss_pred CccEEEEE---------eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380 247 DVRMVVAG---------SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF 317 (536)
Q Consensus 247 ~~~~l~tg---------~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~ 317 (536)
|+++++.. +..+.+.|||+.+ ..+..+......+....|+|+| +.++... ++.|.+++..++..
T Consensus 3 d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~-----~~~~~l~~~~~~~~~~~~sP~g-~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 3 DGKFVLFATNYTKQWRHSFKGDYYIYDIET-----GEITPLTPPPPKLQDAKWSPDG-KYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp TSSEEEEEEEEEEESSSEEEEEEEEEETTT-----TEEEESS-EETTBSEEEE-SSS-TEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCeEEEEECcEEeeeeccceeEEEEecCC-----CceEECcCCccccccceeecCC-CeeEEEe-cCceEEEECCCCCe
Confidence 77776663 2346789999986 2333333336678899999998 8877775 67899999877754
Q ss_pred EEeecCC------------------CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC---CCeEEEEEe
Q 009380 318 DLVYSSE------------------YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE---ARINTIDFN 376 (536)
Q Consensus 318 ~~~~~~~------------------~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~---~~i~~i~~~ 376 (536)
..+.... ..-..+-|+|++..+++.-..+..|..+.+-. ..... -.+..+.+-
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~------~~~~~~~yp~~~~~~YP 149 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD------YSPPDSQYPEVESIRYP 149 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE------ESSSTESS-EEEEEE--
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeec------cCCccccCCcccccccC
Confidence 4333211 12357889999944444444455555444321 11111 123344432
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCCCCCC-cceeecccCceeEEEEccCCCeEEEEe--CCC---cEEEEeCCCCCcce
Q 009380 377 PRNPNIMATSSTDGTACIWDLRSMATDKPE-PMKVLSHKRAVHSAYFSPSGSSLATTS--FDD---TIGIWSGVNFENTS 450 (536)
Q Consensus 377 p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~-~~~~~~~~~~v~~l~~sp~g~~l~t~s--~dg---~I~iwd~~~~~~~~ 450 (536)
.-|.. -.. -.+.|+|+.+++..... ......-..-+..+.|.+++..|+..- .+. .+.++|..++....
T Consensus 150 k~G~~-np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~ 224 (353)
T PF00930_consen 150 KAGDP-NPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV 224 (353)
T ss_dssp BTTS----E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE
T ss_pred CCCCc-CCc----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE
Confidence 22321 111 14778898876421000 001123456788999999998444433 222 37777877765544
Q ss_pred EEeccCCCCceeeee-EEEEc-CCC-CEEEEEcCCCc--EEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEc
Q 009380 451 MIHHNNQTGRWISSF-RAIWG-WDD-SCVFIGNMTRT--VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT 525 (536)
Q Consensus 451 ~~~~~~~~~~~~~~~-~~~~s-~~g-~~l~~gs~dg~--I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs 525 (536)
..... ...|+... ...|. +++ .+|.....+|. |.+++..++.. ..+..+.-.+ .-.+.+.+....+..+++
T Consensus 225 ~~~e~--~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V-~~i~~~d~~~~~iyf~a~ 300 (353)
T PF00930_consen 225 VLEET--SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEV-TSILGWDEDNNRIYFTAN 300 (353)
T ss_dssp EEEEE--SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-E-EEEEEEECTSSEEEEEES
T ss_pred EEEec--CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceee-cccceEcCCCCEEEEEec
Confidence 44221 22233211 12333 444 45555556664 56666666643 3443322222 234566665444445555
Q ss_pred c
Q 009380 526 G 526 (536)
Q Consensus 526 ~ 526 (536)
.
T Consensus 301 ~ 301 (353)
T PF00930_consen 301 G 301 (353)
T ss_dssp S
T ss_pred C
Confidence 4
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.81 E-value=0.0043 Score=63.01 Aligned_cols=223 Identities=11% Similarity=0.086 Sum_probs=115.8
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEE-ECCC
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM-DAEK 314 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw-d~~~ 314 (536)
....+.++| +|+++++++ +|.-.|+.... ... .. .+.-....|.+. +.+++-...++|.++ ++..
T Consensus 34 ~p~~ls~np--ngr~v~V~g-~geY~iyt~~~----~r~-k~----~G~g~~~vw~~~--n~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 34 YPQSLSHNP--NGRFVLVCG-DGEYEIYTALA----WRN-KA----FGSGLSFVWSSR--NRYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp --SEEEE-T--TSSEEEEEE-TTEEEEEETTT----TEE-EE----EEE-SEEEE-TS--SEEEEE-TTS-EEEEETTEE
T ss_pred CCeeEEECC--CCCEEEEEc-CCEEEEEEccC----Ccc-cc----cCceeEEEEecC--ccEEEEECCCeEEEEEcCcc
Confidence 467899999 999999854 78888888442 222 11 133456889884 578888888999996 3432
Q ss_pred CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEE
Q 009380 315 EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACI 394 (536)
Q Consensus 315 ~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~i 394 (536)
.. ...+.....+..|-. | .+|...+.+ .|.+||+.+++.+..+... .|..|.|++++ .+++..+. ..+.|
T Consensus 100 ~~-~k~i~~~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g-~~val~t~-~~i~i 169 (443)
T PF04053_consen 100 EV-VKSIKLPFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDG-ELVALVTK-DSIYI 169 (443)
T ss_dssp -T-T-----SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTS-SEEEEE-S--SEEE
T ss_pred cc-ceEEcCCcccceEEc---C-cEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCC-CEEEEEeC-CeEEE
Confidence 22 111222223444433 4 667766655 8999999999999988733 38999999987 57777764 47888
Q ss_pred EeCCCC------CCCCCCcceeec-ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEE
Q 009380 395 WDLRSM------ATDKPEPMKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRA 467 (536)
Q Consensus 395 wdl~~~------~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (536)
++.... .......+.... ....|.+..|..+ .|+-.+.. .|+.+ -+++ ..++.+... .+.. +
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge-~~~i~~ld~---~~yl--l 238 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGE-TGIIAHLDK---PLYL--L 238 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTE-EEEEEE-SS-----EE--E
T ss_pred EEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCC-cceEEEcCC---ceEE--E
Confidence 875541 000001233332 2678999999865 34433433 66663 3332 233333222 2233 3
Q ss_pred EEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 468 IWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 468 ~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
.+.+..+.++....++.|..+.+...
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE--HH
T ss_pred EEEccCCEEEEEECCCCEEEEEECHH
Confidence 34565677888888888888876543
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.78 E-value=0.0013 Score=70.41 Aligned_cols=143 Identities=16% Similarity=0.161 Sum_probs=99.3
Q ss_pred CccEEEEE-eCCCcEEEEECCCCCCCCCceEEeccCCCC-EEEEEEecC----CCCEEEEEECCCeEEEEECCCC--eEE
Q 009380 247 DVRMVVAG-SKLGNITFWNLDSQQDEDNGIYLFRTHLGP-ISGIVTQQY----CLSKIFTSCYDGLIRLMDAEKE--VFD 318 (536)
Q Consensus 247 ~~~~l~tg-~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~-V~~l~~~~~----~~~~l~s~s~dg~I~vwd~~~~--~~~ 318 (536)
+..+|+.. .....|+-.|+.. ++.+..+..|... |..++-... .+...+.|-.+..|..||.+-. ++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~----GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLER----GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV 567 (794)
T ss_pred ccceEeecCCCCCceEEEecCC----CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee
Confidence 44455443 3456788888887 7889999888754 555543211 1245677778889999998753 222
Q ss_pred E----eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 009380 319 L----VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTAC 393 (536)
Q Consensus 319 ~----~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~ 393 (536)
. .+.......|++-..+| +|++|+.+|.|++||- .++. -..+.+...+|.+|+.+.||..+|+|| +..|.
T Consensus 568 ~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLl 642 (794)
T PF08553_consen 568 DSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLL 642 (794)
T ss_pred eccccccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEE
Confidence 1 23345678888888776 8999999999999994 4433 334557789999999999996555555 56788
Q ss_pred EEeCC
Q 009380 394 IWDLR 398 (536)
Q Consensus 394 iwdl~ 398 (536)
+++..
T Consensus 643 Li~t~ 647 (794)
T PF08553_consen 643 LIDTL 647 (794)
T ss_pred EEEEe
Confidence 88753
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.76 E-value=0.019 Score=58.36 Aligned_cols=226 Identities=15% Similarity=0.126 Sum_probs=110.2
Q ss_pred EeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC
Q 009380 277 LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS 356 (536)
Q Consensus 277 ~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~ 356 (536)
.+.........+.++|++ +.++.+ .||.-.++......-.. .+.....+|.+. +.+++-..++.|.++.--.
T Consensus 27 ~lg~~~~~p~~ls~npng-r~v~V~-g~geY~iyt~~~~r~k~----~G~g~~~vw~~~--n~yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNG-RFVLVC-GDGEYEIYTALAWRNKA----FGSGLSFVWSSR--NRYAVLESSSTIKIYKNFK 98 (443)
T ss_dssp EEEE-SS--SEEEE-TTS-SEEEEE-ETTEEEEEETTTTEEEE----EEE-SEEEE-TS--SEEEEE-TTS-EEEEETTE
T ss_pred cCCCCCcCCeeEEECCCC-CEEEEE-cCCEEEEEEccCCcccc----cCceeEEEEecC--ccEEEEECCCeEEEEEcCc
Confidence 333444557899999998 777774 47878888744333222 245667889885 4677777788999974333
Q ss_pred CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC
Q 009380 357 RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD 436 (536)
Q Consensus 357 ~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg 436 (536)
......+.. ...+..|-. | .+|+..+. +.|.+||+.++ ..+...... .|..+.|+++|.+++..+.+
T Consensus 99 ~~~~k~i~~-~~~~~~If~---G-~LL~~~~~-~~i~~yDw~~~-----~~i~~i~v~-~vk~V~Ws~~g~~val~t~~- 165 (443)
T PF04053_consen 99 NEVVKSIKL-PFSVEKIFG---G-NLLGVKSS-DFICFYDWETG-----KLIRRIDVS-AVKYVIWSDDGELVALVTKD- 165 (443)
T ss_dssp E-TT------SS-EEEEE----S-SSEEEEET-TEEEEE-TTT-------EEEEESS--E-EEEEE-TTSSEEEEE-S--
T ss_pred cccceEEcC-CcccceEEc---C-cEEEEECC-CCEEEEEhhHc-----ceeeEEecC-CCcEEEEECCCCEEEEEeCC-
Confidence 333334432 223343332 5 56666654 48999999985 333333333 38999999999999988855
Q ss_pred cEEEEeCCCC----------CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceee
Q 009380 437 TIGIWSGVNF----------ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISA 506 (536)
Q Consensus 437 ~I~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~ 506 (536)
.+.|++.... +......+. ....+. ..+|..+ .|+-.+.+ .|+.+--.....+..+.. .
T Consensus 166 ~i~il~~~~~~~~~~~~~g~e~~f~~~~E--~~~~Ik--Sg~W~~d--~fiYtT~~-~lkYl~~Ge~~~i~~ld~----~ 234 (443)
T PF04053_consen 166 SIYILKYNLEAVAAIPEEGVEDAFELIHE--ISERIK--SGCWVED--CFIYTTSN-HLKYLVNGETGIIAHLDK----P 234 (443)
T ss_dssp SEEEEEE-HHHHHHBTTTB-GGGEEEEEE--E-S--S--EEEEETT--EEEEE-TT-EEEEEETTEEEEEEE-SS-----
T ss_pred eEEEEEecchhcccccccCchhceEEEEE--ecceeE--EEEEEcC--EEEEEcCC-eEEEEEcCCcceEEEcCC----c
Confidence 5777764321 001111111 011122 2556655 44333333 555532222223444432 1
Q ss_pred eeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 507 IPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 507 ~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
. ..+...|. .+.|.....|+.|..+.++
T Consensus 235 ~-yllgy~~~-~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 235 L-YLLGYLPK-ENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp --EEEEEETT-TTEEEEE-TT--EEEEE--
T ss_pred e-EEEEEEcc-CCEEEEEECCCCEEEEEEC
Confidence 1 23455553 3788888888888887664
No 358
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.74 E-value=0.014 Score=57.35 Aligned_cols=174 Identities=12% Similarity=0.092 Sum_probs=105.8
Q ss_pred cEEEEECCCCCCCCCceEEeccC-CCCEEEEEE---ecC---CCCEEEEEEC----------CCeEEEEECCCC-----e
Q 009380 259 NITFWNLDSQQDEDNGIYLFRTH-LGPISGIVT---QQY---CLSKIFTSCY----------DGLIRLMDAEKE-----V 316 (536)
Q Consensus 259 ~v~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~---~~~---~~~~l~s~s~----------dg~I~vwd~~~~-----~ 316 (536)
.|++.|..+ ...+..+.-. ...+.+++. ..+ ...+|+.|.. .|.|.++++... +
T Consensus 3 ~i~l~d~~~----~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~ 78 (321)
T PF03178_consen 3 SIRLVDPTT----FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFK 78 (321)
T ss_dssp EEEEEETTT----SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----E
T ss_pred EEEEEeCCC----CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceE
Confidence 567777765 3344333221 223444433 221 1267776653 289999999884 4
Q ss_pred EEEe--ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc-cceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380 317 FDLV--YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWL-LHEARINTIDFNPRNPNIMATSSTDGTA 392 (536)
Q Consensus 317 ~~~~--~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i 392 (536)
+..+ ....++|++++-. ++ .|+++.. +.|.+|++...+ ....-. .....+.++... + ++++.|.....+
T Consensus 79 l~~i~~~~~~g~V~ai~~~-~~--~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv 151 (321)
T PF03178_consen 79 LKLIHSTEVKGPVTAICSF-NG--RLVVAVG-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSV 151 (321)
T ss_dssp EEEEEEEEESS-EEEEEEE-TT--EEEEEET-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSE
T ss_pred EEEEEEEeecCcceEhhhh-CC--EEEEeec-CEEEEEEccCcccchhhheecceEEEEEEecc--c-cEEEEEEcccCE
Confidence 4433 3457899999887 33 4555554 599999999877 332222 233467777766 3 589999888888
Q ss_pred EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380 393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~ 444 (536)
.++.++... ..-..+........++++.|-++++.++++..+|.|.++...
T Consensus 152 ~~~~~~~~~-~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEEN-NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTT-E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEccC-CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 888555411 001111222346678899998776789999999999999875
No 359
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.71 E-value=0.022 Score=54.60 Aligned_cols=220 Identities=12% Similarity=0.112 Sum_probs=122.5
Q ss_pred CEEEEEECCCeEEEEECCC-CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE-----------
Q 009380 296 SKIFTSCYDGLIRLMDAEK-EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW----------- 363 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~-~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~----------- 363 (536)
+.|+.|+.+| |.++++.. ....... ....|..+...++- +.+++-+ |+.|.++++..-......
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 7899999898 89999933 3333322 23349999999876 4555443 489999998865443311
Q ss_pred ---eccCCCeEEEE--EecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcE
Q 009380 364 ---LLHEARINTID--FNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTI 438 (536)
Q Consensus 364 ---~~h~~~i~~i~--~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I 438 (536)
......+..++ -...+...|+++. ...|.+|.+...................+.++.|. ++.|+.+..++ .
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~-f 159 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKG-F 159 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCc-e
Confidence 11223444444 1122333444444 56899998876421110234445567889999998 55677776554 8
Q ss_pred EEEeCCCCCcceEEeccCCC---------CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccce--eccCCceeee
Q 009380 439 GIWSGVNFENTSMIHHNNQT---------GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVA--TLQSPYISAI 507 (536)
Q Consensus 439 ~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~--~l~~~~~~~~ 507 (536)
.+.|+.++.....+...... ...+..+ --+++.+|++- +..-.+.|.. |+... .+.-.. .
T Consensus 160 ~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W~~---~ 230 (275)
T PF00780_consen 160 YLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIF---QLSDNEFLLCY--DNIGVFVNKN-GEPSRKSTIQWSS---A 230 (275)
T ss_pred EEEecCCCCceEEeCccCCcchhhhcccCCCceEEE---EeCCceEEEEe--cceEEEEcCC-CCcCcccEEEcCC---c
Confidence 89999876655444222111 1122222 22345666654 3333344443 32322 222111 1
Q ss_pred eeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 508 PCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 508 ~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
+..+.+. ..+|++.+.+ .|.||++.
T Consensus 231 p~~~~~~---~pyli~~~~~-~iEV~~~~ 255 (275)
T PF00780_consen 231 PQSVAYS---SPYLIAFSSN-SIEVRSLE 255 (275)
T ss_pred hhEEEEE---CCEEEEECCC-EEEEEECc
Confidence 2234443 2577777765 49999874
No 360
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.69 E-value=0.014 Score=59.58 Aligned_cols=252 Identities=12% Similarity=0.111 Sum_probs=125.5
Q ss_pred cccccccc-CCceEEEEEEecCCccEEEEE-eCCC----cEEEEECCCCCCCCCceEE-eccCCCCEEEEEEecCCCCEE
Q 009380 226 PENIARIM-PGRITQMKFLPCSDVRMVVAG-SKLG----NITFWNLDSQQDEDNGIYL-FRTHLGPISGIVTQQYCLSKI 298 (536)
Q Consensus 226 ~~~~~~~~-~~~I~~v~~~p~~~~~~l~tg-~~dg----~v~iwd~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~l 298 (536)
+....+.+ .-.+..+.++| ++++||.+ +..| .|+++|+.+ +..+.. +... . ...+.|.+++ ..|
T Consensus 114 ~n~l~~~~~~~~~~~~~~Sp--dg~~la~~~s~~G~e~~~l~v~Dl~t----g~~l~d~i~~~-~-~~~~~W~~d~-~~~ 184 (414)
T PF02897_consen 114 PNELAKDGGYVSLGGFSVSP--DGKRLAYSLSDGGSEWYTLRVFDLET----GKFLPDGIENP-K-FSSVSWSDDG-KGF 184 (414)
T ss_dssp GGGGSTTSS-EEEEEEEETT--TSSEEEEEEEETTSSEEEEEEEETTT----TEEEEEEEEEE-E-SEEEEECTTS-SEE
T ss_pred chHhhccCceEEeeeeeECC--CCCEEEEEecCCCCceEEEEEEECCC----CcCcCCccccc-c-cceEEEeCCC-CEE
Confidence 34444444 23344567788 99988866 3444 499999987 433322 1211 1 1239999998 555
Q ss_pred EEEECCC-----------eEEEEECCCCeE--EEeecC-C-Cc-eeEEEecCCCCCEEEEEE-CC---CeEEEEECCCC-
Q 009380 299 FTSCYDG-----------LIRLMDAEKEVF--DLVYSS-E-YA-VFSLSQQPNNVNTLYFGE-GQ---GGLNIWDVRSR- 357 (536)
Q Consensus 299 ~s~s~dg-----------~I~vwd~~~~~~--~~~~~~-~-~~-i~~l~~~~~~~~~l~~g~-~d---g~i~i~d~~~~- 357 (536)
+....+. .|+.|.+.+... ..++.. . .. ...+..++++ ++|+... .. ..+.+.|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~-~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDG-RYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTS-SEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcc-cEEEEEEEccccCCeEEEEeccccC
Confidence 5444332 378888877543 244433 2 22 5688889988 5655433 22 35888898875
Q ss_pred ---ccceeEeccCCCeE-EEEEecCCCCEEEEEeC---CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEE
Q 009380 358 ---KSATEWLLHEARIN-TIDFNPRNPNIMATSST---DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLA 430 (536)
Q Consensus 358 ---~~~~~~~~h~~~i~-~i~~~p~~~~~l~s~s~---dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 430 (536)
.....+......+. .+... +..+++.... .+.|.-.++...... .....+..+...+.-..+...+.+|+
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~-~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPA-EWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGG-GEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccc-cceeEEcCCCCceeEEEEEEECCEEE
Confidence 23444444444444 34444 3344444432 366777787764310 01123445655433334444455555
Q ss_pred EEe-CCC--cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEE--EEEcCC--CcEEEEcCCccc
Q 009380 431 TTS-FDD--TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCV--FIGNMT--RTVEVISPAQRR 494 (536)
Q Consensus 431 t~s-~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l--~~gs~d--g~I~v~d~~~~~ 494 (536)
... .++ .|++|++..+.....+... ....+.. ....+++..+ ...+.. ..+..||+.+++
T Consensus 341 l~~~~~~~~~l~v~~~~~~~~~~~~~~p--~~g~v~~--~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 341 LSYRENGSSRLRVYDLDDGKESREIPLP--EAGSVSG--VSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEETTEEEEEEEETT-TEEEEEEESS--SSSEEEE--EES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEEEECCccEEEEEECCCCcEEeeecCC--cceEEec--cCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 544 444 4889998723333333221 1112222 2223333332 223322 567777777764
No 361
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.68 E-value=0.062 Score=57.71 Aligned_cols=284 Identities=10% Similarity=0.055 Sum_probs=147.0
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
+..|.-..|-- |..+|.++..||.+.-|.++.........+...--+.|+.=-.|+..+.+.+++++ |.-..+|..+
T Consensus 583 PRSIl~~~~e~--d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~n 659 (1096)
T KOG1897|consen 583 PRSILLTTFEG--DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSSN 659 (1096)
T ss_pred chheeeEEeec--cceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEecC
Confidence 44565666655 68899999999999888776532111111211223456666677776645666655 5555566554
Q ss_pred CCeEEEeecCCCceeEEEecC-CCCCEEEEEECCCeEEEEECCCCcc--ceeEeccCCCeEEEEEecCCCCEEEEEeCC-
Q 009380 314 KEVFDLVYSSEYAVFSLSQQP-NNVNTLYFGEGQGGLNIWDVRSRKS--ATEWLLHEARINTIDFNPRNPNIMATSSTD- 389 (536)
Q Consensus 314 ~~~~~~~~~~~~~i~~l~~~~-~~~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d- 389 (536)
..-...-.....--..+.|+. ..+..++.+.. +.+.+.-+..-+. ++++. -......+++++.. .++.+.+.-
T Consensus 660 ~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~s-l~~~v~s~r~ 736 (1096)
T KOG1897|consen 660 GKLVYSPLSLKEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVP-LGESPRRICYQESS-LTFGVLSNRI 736 (1096)
T ss_pred CcEEEeccchHHhhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeec-CCCChhheEecccc-eEEEEEeccc
Confidence 432221111111111122222 22234555444 3666665543221 33433 33445667777633 344443321
Q ss_pred -------------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC-CCeEEEEeC----------CCcEEEEeCCC
Q 009380 390 -------------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS-GSSLATTSF----------DDTIGIWSGVN 445 (536)
Q Consensus 390 -------------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~t~s~----------dg~I~iwd~~~ 445 (536)
..++++|-.+.+...............|.++.|..| +.++++|.. .|.|.||.+..
T Consensus 737 e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 737 ESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE 816 (1096)
T ss_pred ccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec
Confidence 136666665532000000000112235666678876 677777753 46788887776
Q ss_pred CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEc
Q 009380 446 FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT 525 (536)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs 525 (536)
...+..+....-.+..... + --+|++||.- +..|++|+..+.+.+..-..++...+...+.. .++.++.|.
T Consensus 817 ~~~L~~v~e~~v~Gav~aL--~--~fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v---~gdeI~VgD 887 (1096)
T KOG1897|consen 817 LNSLELVAETVVKGAVYAL--V--EFNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQV---KGDEIAVGD 887 (1096)
T ss_pred CCceeeeeeeeeccceeeh--h--hhCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEe---cCcEEEEee
Confidence 4444444322222222221 1 1256666554 45899999998866665555555554444444 467888887
Q ss_pred cCCeEEE
Q 009380 526 GGGQVYV 532 (536)
Q Consensus 526 ~Dg~v~i 532 (536)
-=+.+.+
T Consensus 888 lm~Sitl 894 (1096)
T KOG1897|consen 888 LMRSITL 894 (1096)
T ss_pred ccceEEE
Confidence 6666554
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.64 E-value=0.0032 Score=49.82 Aligned_cols=102 Identities=10% Similarity=0.128 Sum_probs=71.3
Q ss_pred EEEEEEe---cCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccce
Q 009380 285 ISGIVTQ---QYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSAT 361 (536)
Q Consensus 285 V~~l~~~---~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~ 361 (536)
|+++++. .+|.+.|+.||.|..|++|+-+ ....-......|++++-... ..++.+..+|+|.+|+-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG--GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC--CEEEEEecCCEEEEEeCc--ceee
Confidence 5566554 4555899999999999999865 33444455678888888776 479999999999999853 2233
Q ss_pred eEeccCCCeEEEEEec---CCCCEEEEEeCCCcEE
Q 009380 362 EWLLHEARINTIDFNP---RNPNIMATSSTDGTAC 393 (536)
Q Consensus 362 ~~~~h~~~i~~i~~~p---~~~~~l~s~s~dg~i~ 393 (536)
..+ ....+.++.+.. +|..-|++|-.+|.|-
T Consensus 76 RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 333 334466666553 3444788888888764
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00027 Score=71.28 Aligned_cols=96 Identities=16% Similarity=0.192 Sum_probs=82.3
Q ss_pred cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEE-EEEEecCCCCEEEEEECCCeEEE
Q 009380 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPIS-GIVTQQYCLSKIFTSCYDGLIRL 309 (536)
Q Consensus 231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~-~l~~~~~~~~~l~s~s~dg~I~v 309 (536)
...+-.|.-+.|+| ..++||.+..+|.|.+..+. .+.+.++..|...++ +++|.||| +.|+.|-.||+|++
T Consensus 17 ~~l~~~i~~~ewnP--~~dLiA~~t~~gelli~R~n-----~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L 88 (665)
T KOG4640|consen 17 MSLPINIKRIEWNP--KMDLIATRTEKGELLIHRLN-----WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRL 88 (665)
T ss_pred hccccceEEEEEcC--ccchhheeccCCcEEEEEec-----cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEE
Confidence 44466788999999 88999999999999999988 577888887888888 99999998 99999999999999
Q ss_pred EECCCCeEEEe--ecCCCceeEEEecC
Q 009380 310 MDAEKEVFDLV--YSSEYAVFSLSQQP 334 (536)
Q Consensus 310 wd~~~~~~~~~--~~~~~~i~~l~~~~ 334 (536)
.|++++..... +.....|.++-|.+
T Consensus 89 ~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 89 HDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEccCCCceeccccccccchheeeccc
Confidence 99999866554 55567888888864
No 364
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.62 E-value=0.094 Score=55.08 Aligned_cols=189 Identities=11% Similarity=0.120 Sum_probs=103.8
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC-CCEE----------EEEEecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL-GPIS----------GIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF 317 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~-~~V~----------~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~ 317 (536)
..|++++.++.|.-.|..+ ++.+-.+.... ..+. .+++. + ..++.++.|+.|..+|..+++.
T Consensus 70 g~vyv~s~~g~v~AlDa~T----Gk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~-~~v~v~t~dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKT----GKELWKYDPKLPDDVIPVMCCDVVNRGVALY--D-GKVFFGTLDARLVALDAKTGKV 142 (527)
T ss_pred CEEEEECCCCcEEEEECCC----CceeeEecCCCCcccccccccccccccceEE--C-CEEEEEcCCCEEEEEECCCCCE
Confidence 4666667777888888777 44444332211 0011 12222 2 5678888999999999999987
Q ss_pred EEeecCCC-----ceeEEEecCCCCCEEEEEEC------CCeEEEEECCCCccceeEeccCC------------------
Q 009380 318 DLVYSSEY-----AVFSLSQQPNNVNTLYFGEG------QGGLNIWDVRSRKSATEWLLHEA------------------ 368 (536)
Q Consensus 318 ~~~~~~~~-----~i~~l~~~~~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~~------------------ 368 (536)
........ .+.+--...+ ..++++.. +|.|.-+|.++|+.+-.+..-..
T Consensus 143 ~W~~~~~~~~~~~~~tssP~v~~--g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~ 220 (527)
T TIGR03075 143 VWSKKNGDYKAGYTITAAPLVVK--GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGA 220 (527)
T ss_pred EeecccccccccccccCCcEEEC--CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccccc
Confidence 65543211 1111101112 35666543 68999999999987655431100
Q ss_pred -------------Ce-EEEEEecCCCCEEEEEeCC-----C-----------cEEEEeCCCCCCCCCCcceeeccc----
Q 009380 369 -------------RI-NTIDFNPRNPNIMATSSTD-----G-----------TACIWDLRSMATDKPEPMKVLSHK---- 414 (536)
Q Consensus 369 -------------~i-~~i~~~p~~~~~l~s~s~d-----g-----------~i~iwdl~~~~~~~~~~~~~~~~~---- 414 (536)
.+ ..+++.|.. .++..+..+ + .|.-.|+++++.. -..+...|.
T Consensus 221 ~tw~~~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~--W~~Q~~~~D~wD~ 297 (527)
T TIGR03075 221 KTWPGDAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIK--WHYQTTPHDEWDY 297 (527)
T ss_pred CCCCCCccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEE--EeeeCCCCCCccc
Confidence 01 123555533 344444311 2 4666677776521 111111221
Q ss_pred ---CceeEEEEccCCC---eEEEEeCCCcEEEEeCCCCCcc
Q 009380 415 ---RAVHSAYFSPSGS---SLATTSFDDTIGIWSGVNFENT 449 (536)
Q Consensus 415 ---~~v~~l~~sp~g~---~l~t~s~dg~I~iwd~~~~~~~ 449 (536)
....-+.+..+|+ .++.+..+|.+.+.|-.+++.+
T Consensus 298 d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 298 DGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 1112222334665 7888999999999999988775
No 365
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.55 E-value=0.032 Score=53.62 Aligned_cols=263 Identities=12% Similarity=0.087 Sum_probs=145.3
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC----------CCeEEEEECCCCeEEE--eecCC-
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY----------DGLIRLMDAEKEVFDL--VYSSE- 324 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~----------dg~I~vwd~~~~~~~~--~~~~~- 324 (536)
+.+.|+|.++ .+.+-.+.. +-.-.+..+|++ +.+++++. .-.|.+||..+-.... .....
T Consensus 17 ~rv~viD~d~----~k~lGmi~~--g~~~~~~~spdg-k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~ 89 (342)
T PF06433_consen 17 SRVYVIDADS----GKLLGMIDT--GFLGNVALSPDG-KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP 89 (342)
T ss_dssp EEEEEEETTT----TEEEEEEEE--ESSEEEEE-TTS-SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred ceEEEEECCC----CcEEEEeec--ccCCceeECCCC-CEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence 4688888876 444444432 223346788998 77776542 4468999999865432 22211
Q ss_pred -----CceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 009380 325 -----YAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDL 397 (536)
Q Consensus 325 -----~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl 397 (536)
.....++++.++ +++++... --.|.|.|+..++.+.++... + |....|.++.-|.+-|.||.+.-..+
T Consensus 90 R~~~~~~~~~~~ls~dg-k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~L 164 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADG-KFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTL 164 (342)
T ss_dssp B--BS--GGGEEE-TTS-SEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred hheecccccceEEccCC-cEEEEEccCCCCeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEE
Confidence 123446777777 66666543 357899999888887777632 1 33334545566888888999999988
Q ss_pred CCCCCCCCCcceee-c-ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC-----Cceeee-e-EEE
Q 009380 398 RSMATDKPEPMKVL-S-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT-----GRWISS-F-RAI 468 (536)
Q Consensus 398 ~~~~~~~~~~~~~~-~-~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~-----~~~~~~-~-~~~ 468 (536)
.............+ . ....+..-.+...+..++-.+.+|.|+-.|+........-.....+ ..|--. . -++
T Consensus 165 d~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A 244 (342)
T PF06433_consen 165 DADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA 244 (342)
T ss_dssp TSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE
T ss_pred CCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee
Confidence 85321110111111 1 1222334455555555666789999999888655432221111000 011000 0 034
Q ss_pred EcCCCCEEEEEcC---C-------CcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEE-ccCCeEEEEec
Q 009380 469 WGWDDSCVFIGNM---T-------RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA-TGGGQVYVWTS 535 (536)
Q Consensus 469 ~s~~g~~l~~gs~---d-------g~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasg-s~Dg~v~iW~~ 535 (536)
+++....|++--. + ..|-+||+.+++.+..+...+. + .++..+-.+..+|.+. ..++.|.|||.
T Consensus 245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-~--~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-I--DSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-E--SEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-c--ceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 5554444443211 1 2488889999999999875432 2 1344444444577654 56899999985
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.53 E-value=0.032 Score=57.05 Aligned_cols=246 Identities=11% Similarity=0.045 Sum_probs=130.0
Q ss_pred eeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCc-eEEEEEEecCCccEEEEEeCCC------
Q 009380 186 FKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGR-ITQMKFLPCSDVRMVVAGSKLG------ 258 (536)
Q Consensus 186 v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~-I~~v~~~p~~~~~~l~tg~~dg------ 258 (536)
+....++|+|+.++...+.. ++....+++.|+..... +....... -..+.|.+ ++..|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~-----G~e~~~l~v~Dl~tg~~-l~d~i~~~~~~~~~W~~--d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDG-----GSEWYTLRVFDLETGKF-LPDGIENPKFSSVSWSD--DGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEEETTTSSEEEEEEEET-----TSSEEEEEEEETTTTEE-EEEEEEEEESEEEEECT--TSSEEEEEECSTTTSS-C
T ss_pred eeeeeECCCCCEEEEEecCC-----CCceEEEEEEECCCCcC-cCCcccccccceEEEeC--CCCEEEEEEeCccccccc
Confidence 34678999999999663222 12223688888755422 22222222 23399999 877666554332
Q ss_pred -----cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEE-ECC---CeEEEEECCCC-----eEEEeecCC
Q 009380 259 -----NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTS-CYD---GLIRLMDAEKE-----VFDLVYSSE 324 (536)
Q Consensus 259 -----~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~-s~d---g~I~vwd~~~~-----~~~~~~~~~ 324 (536)
.|+.|.+.+.......+.....+......+..++++ .+|+.. ... ..+.+.++..+ ....+....
T Consensus 198 ~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~-~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDG-RYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTS-SEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcc-cEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 378888877432112233322222226688899998 666543 332 35788888874 555555544
Q ss_pred CceeEEEecCCCCCEEEEEE---CCCeEEEEECCCCcc---ceeEeccCC--CeEEEEEecCCCCEEEEEeCCC--cEEE
Q 009380 325 YAVFSLSQQPNNVNTLYFGE---GQGGLNIWDVRSRKS---ATEWLLHEA--RINTIDFNPRNPNIMATSSTDG--TACI 394 (536)
Q Consensus 325 ~~i~~l~~~~~~~~~l~~g~---~dg~i~i~d~~~~~~---~~~~~~h~~--~i~~i~~~p~~~~~l~s~s~dg--~i~i 394 (536)
..+....-+..+ .+++... .++.|...++..... ...+..+.. .+..+... +..+++....++ .|++
T Consensus 277 ~~~~~~v~~~~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v 353 (414)
T PF02897_consen 277 DGVEYYVDHHGD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRV 353 (414)
T ss_dssp SS-EEEEEEETT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEE
T ss_pred CceEEEEEccCC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEE
Confidence 444433333333 3443332 246788888887764 224455665 45555554 435666665554 4788
Q ss_pred EeCC-CCCCCCCCcceee-cccCceeEEEEccCCCeEE-E-EeC--CCcEEEEeCCCCCc
Q 009380 395 WDLR-SMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLA-T-TSF--DDTIGIWSGVNFEN 448 (536)
Q Consensus 395 wdl~-~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~-t-~s~--dg~I~iwd~~~~~~ 448 (536)
+|+. .. ...... .-.+.|..+...++++.+. + .|. -+++..||+.+++.
T Consensus 354 ~~~~~~~-----~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 354 YDLDDGK-----ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EETT-TE-----EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EECCCCc-----EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 8988 32 122222 2334455665555554332 2 222 34577777776654
No 367
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.51 E-value=0.084 Score=53.61 Aligned_cols=182 Identities=12% Similarity=0.096 Sum_probs=89.7
Q ss_pred eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc------cceeEeccCCCeEEEEEecCC
Q 009380 306 LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK------SATEWLLHEARINTIDFNPRN 379 (536)
Q Consensus 306 ~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~------~~~~~~~h~~~i~~i~~~p~~ 379 (536)
.|.+|+.....+..+.-..+.|.++.|..+. .|++-..||.+++||+.... .+.........+..+.+...|
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 3666665554443332222789999998864 67777899999999986322 111111122223333333334
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCC----CCCcceee-cccC-ceeE-EEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE
Q 009380 380 PNIMATSSTDGTACIWDLRSMATD----KPEPMKVL-SHKR-AVHS-AYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI 452 (536)
Q Consensus 380 ~~~l~s~s~dg~i~iwdl~~~~~~----~~~~~~~~-~~~~-~v~~-l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~ 452 (536)
-.++++ ++.+.+..--..... ...+.... .+.. .... ..++.+....+....++.+.+.+-...+. +
T Consensus 140 -ivvLt~--~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 -IVVLTG--NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred -EEEECC--CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 333333 444443322111000 00000000 0000 1111 23444455555555555566444332211 1
Q ss_pred eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccC
Q 009380 453 HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS 501 (536)
Q Consensus 453 ~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~ 501 (536)
. ..+ ....++.||+|++||.-+.+|.+.|.+..-.+.+..+..
T Consensus 214 ~---~~~---~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 214 D---SDG---PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred c---CCC---CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 0 112 123377899999999999999998887665555555443
No 368
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.46 E-value=0.011 Score=46.79 Aligned_cols=104 Identities=14% Similarity=0.207 Sum_probs=72.3
Q ss_pred eEEEEEEecC-Cc-cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380 237 ITQMKFLPCS-DV-RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK 314 (536)
Q Consensus 237 I~~v~~~p~~-~~-~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~ 314 (536)
|+++++.... +| +.|++|+.|..|++|+-+ ..+..+.. ...|+++.-... ..|+.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~------e~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD------EIVAEITE-TDKVTSLCSLGG--GRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC------cEEEEEec-ccceEEEEEcCC--CEEEEEecCCEEEEEeCcc
Confidence 6778877642 22 689999999999999865 34555544 456777777665 6899999999999998754
Q ss_pred CeEEEeecCCCceeEEEecC---CCCCEEEEEECCCeEEE
Q 009380 315 EVFDLVYSSEYAVFSLSQQP---NNVNTLYFGEGQGGLNI 351 (536)
Q Consensus 315 ~~~~~~~~~~~~i~~l~~~~---~~~~~l~~g~~dg~i~i 351 (536)
.... ......+.++++.. ++..-|++|-.+|.|-+
T Consensus 73 RlWR--iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 73 RLWR--IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeee--eccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 4332 23344466666543 44457899999988753
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.46 E-value=0.073 Score=51.41 Aligned_cols=200 Identities=12% Similarity=0.090 Sum_probs=115.6
Q ss_pred EEEecCCcc-EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-E
Q 009380 241 KFLPCSDVR-MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-D 318 (536)
Q Consensus 241 ~~~p~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-~ 318 (536)
.|.+ +.. ++.+--..+.|.-|+..++ ....+.. ...+.++.....+ ..|+++... +.+++.+++.. .
T Consensus 31 ~w~~--~~~~L~w~DI~~~~i~r~~~~~g-----~~~~~~~-p~~~~~~~~~d~~-g~Lv~~~~g--~~~~~~~~~~~~t 99 (307)
T COG3386 31 VWDP--DRGALLWVDILGGRIHRLDPETG-----KKRVFPS-PGGFSSGALIDAG-GRLIACEHG--VRLLDPDTGGKIT 99 (307)
T ss_pred cCcC--CCCEEEEEeCCCCeEEEecCCcC-----ceEEEEC-CCCcccceeecCC-CeEEEEccc--cEEEeccCCceeE
Confidence 3555 443 5555556677888887642 2223322 2334555544444 566666433 56777766555 2
Q ss_pred Eeec-----CCCceeEEEecCCCCCEEEEEECC------------CeEEEEECCCCccceeEeccCCCeEEEEEecCCCC
Q 009380 319 LVYS-----SEYAVFSLSQQPNNVNTLYFGEGQ------------GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPN 381 (536)
Q Consensus 319 ~~~~-----~~~~i~~l~~~~~~~~~l~~g~~d------------g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~ 381 (536)
.+.. .....+.+...|+| . +++++.. |.|+.+|. .+..+..+..+-..-+.|+|+||+..
T Consensus 100 ~~~~~~~~~~~~r~ND~~v~pdG-~-~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 100 LLAEPEDGLPLNRPNDGVVDPDG-R-IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred EeccccCCCCcCCCCceeEcCCC-C-EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE
Confidence 2221 12456678888887 3 4444333 44555554 45555555555566789999999954
Q ss_pred EEEEEeCCCcEEEEeCCC--CCCCCCCcceee-cccCceeEEEEccCCCeEEEEeCCC-cEEEEeCCCCCcceEEecc
Q 009380 382 IMATSSTDGTACIWDLRS--MATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDD-TIGIWSGVNFENTSMIHHN 455 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~--~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg-~I~iwd~~~~~~~~~~~~~ 455 (536)
++++=+..+.|.-|++.. +........... ...+..-.++...+|++.+++..+| .|.+|+.. ++.+..+...
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence 444444558888887763 221111111111 3456677788888898776555554 89999987 7777776543
No 370
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.45 E-value=0.18 Score=53.05 Aligned_cols=240 Identities=13% Similarity=0.115 Sum_probs=135.0
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEecc--CC--CCEEEEEEecCCCCEEEEEEC------CCeEEEEECCCCeEE
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT--HL--GPISGIVTQQYCLSKIFTSCY------DGLIRLMDAEKEVFD 318 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~--h~--~~V~~l~~~~~~~~~l~s~s~------dg~I~vwd~~~~~~~ 318 (536)
..|+.++.++.|.-.|..+ ++.+-.+.. +. ..+++--..-+ ..++.+.. +|.|..+|.++++..
T Consensus 121 ~~v~v~t~dg~l~ALDa~T----Gk~~W~~~~~~~~~~~~~tssP~v~~--g~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKT----GKVVWSKKNGDYKAGYTITAAPLVVK--GKVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred CEEEEEcCCCEEEEEECCC----CCEEeecccccccccccccCCcEEEC--CEEEEeecccccCCCcEEEEEECCCCcee
Confidence 4567778889999999887 444443321 11 11111111112 35555542 689999999998765
Q ss_pred EeecCC--------------------------------Ccee-EEEecCCCCCEEEEEECC-----C-----------eE
Q 009380 319 LVYSSE--------------------------------YAVF-SLSQQPNNVNTLYFGEGQ-----G-----------GL 349 (536)
Q Consensus 319 ~~~~~~--------------------------------~~i~-~l~~~~~~~~~l~~g~~d-----g-----------~i 349 (536)
..+... ..++ .+.+.+.. ++++.+..+ + .|
T Consensus 195 W~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~ 273 (527)
T TIGR03075 195 WRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSI 273 (527)
T ss_pred EeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeE
Confidence 443211 1111 33556655 577777632 2 67
Q ss_pred EEEECCCCccceeEeccCCCe---------EEEEEecCCC--CEEEEEeCCCcEEEEeCCCCCCCCCC------cc--ee
Q 009380 350 NIWDVRSRKSATEWLLHEARI---------NTIDFNPRNP--NIMATSSTDGTACIWDLRSMATDKPE------PM--KV 410 (536)
Q Consensus 350 ~i~d~~~~~~~~~~~~h~~~i---------~~i~~~p~~~--~~l~s~s~dg~i~iwdl~~~~~~~~~------~~--~~ 410 (536)
.-.|+++|+..-.++.....+ .-+.+..++. ..++.+..+|.+++.|-++++..... .. .+
T Consensus 274 vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~ 353 (527)
T TIGR03075 274 VARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGV 353 (527)
T ss_pred EEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccccc
Confidence 888999999877776322211 1122223443 47889999999999999987632100 00 00
Q ss_pred e---------------------------cccC--ceeEEEEccCCCeEEEEeCC--------------------------
Q 009380 411 L---------------------------SHKR--AVHSAYFSPSGSSLATTSFD-------------------------- 435 (536)
Q Consensus 411 ~---------------------------~~~~--~v~~l~~sp~g~~l~t~s~d-------------------------- 435 (536)
. +..+ .-..++++|...+++....+
T Consensus 354 ~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (527)
T TIGR03075 354 DLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIK 433 (527)
T ss_pred CCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccC
Confidence 0 0000 00125667765555544333
Q ss_pred -------CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccC
Q 009380 436 -------DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS 501 (536)
Q Consensus 436 -------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~ 501 (536)
|.|.-+|+.+++............. .. ..-.+..+++++.+|.++.+|..+|+.+..+..
T Consensus 434 p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~--~~----l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 434 PPPDDHMGSLIAWDPITGKIVWEHKEDFPLWG--GV----LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred CCCCCCceeEEEEeCCCCceeeEecCCCCCCC--cc----eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 3455666666655554432211100 00 111455788888999999999999999988765
No 371
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.0081 Score=59.80 Aligned_cols=139 Identities=9% Similarity=0.061 Sum_probs=97.6
Q ss_pred EEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCC------CEEEEEECCCeEEEEECCCCcc--ceeEeccC--
Q 009380 298 IFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNV------NTLYFGEGQGGLNIWDVRSRKS--ATEWLLHE-- 367 (536)
Q Consensus 298 l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~------~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~-- 367 (536)
|.++..-..|+-.|++.|+++........|.-+.+.|+.. ..-++|-.+..|.-||+|-... +...++|.
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 4455556778899999999888777666688888877641 2245577888999999985332 22222332
Q ss_pred --CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeC
Q 009380 368 --ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG 443 (536)
Q Consensus 368 --~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~ 443 (536)
....|++-..+| ++++||.+|.|++||- .+. .....+.+...+|..|..+.+|++|++.| +..+.+.++
T Consensus 429 ~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~---~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 429 TKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGR---RAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred cccccceeeecCCc--eEEEeecCCcEEeehh-hhh---hhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 334566655544 8999999999999996 332 23334557888999999999999887766 556777664
No 372
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.33 E-value=0.31 Score=52.63 Aligned_cols=289 Identities=11% Similarity=0.077 Sum_probs=152.1
Q ss_pred cccCCceEEEEEEecCCc----cEEEEEeCCCcEEEEECCCCCCCCCceEEe--cc--CCCCEEEEEEecCCCCEEEEEE
Q 009380 231 RIMPGRITQMKFLPCSDV----RMVVAGSKLGNITFWNLDSQQDEDNGIYLF--RT--HLGPISGIVTQQYCLSKIFTSC 302 (536)
Q Consensus 231 ~~~~~~I~~v~~~p~~~~----~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~--~~--h~~~V~~l~~~~~~~~~l~s~s 302 (536)
+.....|.|+.++|..++ ++++.|..+..+.+.-.... ...+... .+ -...|.-..|-.+. .+|+++.
T Consensus 527 ~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd---~~~~~~~~l~~~~iPRSIl~~~~e~d~-~yLlval 602 (1096)
T KOG1897|consen 527 KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD---LILITHEQLSGEIIPRSILLTTFEGDI-HYLLVAL 602 (1096)
T ss_pred heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC---cceeeeeccCCCccchheeeEEeeccc-eEEEEEc
Confidence 445789999999985444 37888888777666544431 1222111 11 12345555666666 8999999
Q ss_pred CCCeEEEEEC--CCCeEEEee---cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEE-EEe
Q 009380 303 YDGLIRLMDA--EKEVFDLVY---SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTI-DFN 376 (536)
Q Consensus 303 ~dg~I~vwd~--~~~~~~~~~---~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i-~~~ 376 (536)
.||.+..+-+ .++...... -...++.=-.|+..+.+.+ .+..|.-..+|.-+ ++.+.+-- .-..+..+ .|+
T Consensus 603 gdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~v-fa~sdrP~viY~~n-~kLv~spl-s~kev~~~c~f~ 679 (1096)
T KOG1897|consen 603 GDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAV-FALSDRPTVIYSSN-GKLVYSPL-SLKEVNHMCPFN 679 (1096)
T ss_pred CCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEE-EEeCCCCEEEEecC-CcEEEecc-chHHhhhhcccc
Confidence 9999876654 455433222 2334555556666653344 34445555555533 22221110 11111111 122
Q ss_pred -cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC--------------CcEEEE
Q 009380 377 -PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD--------------DTIGIW 441 (536)
Q Consensus 377 -p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d--------------g~I~iw 441 (536)
+..+..++++. .+.+++.-+..... .-.....-......+++.+....+.+.+.- ..++++
T Consensus 680 s~a~~d~l~~~~-~~~l~i~tid~iqk---l~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vl 755 (1096)
T KOG1897|consen 680 SDAYPDSLASAN-GGALTIGTIDEIQK---LHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVL 755 (1096)
T ss_pred cccCCceEEEec-CCceEEEEecchhh---cceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEe
Confidence 22334566665 45677776665431 112223444566777777755545444321 136777
Q ss_pred eCCCCCcceEEeccCCCCceeeeeEEEEcCC-CCEEEEEcC----------CCcEEEEcCCccccceeccCCceeeeeee
Q 009380 442 SGVNFENTSMIHHNNQTGRWISSFRAIWGWD-DSCVFIGNM----------TRTVEVISPAQRRSVATLQSPYISAIPCR 510 (536)
Q Consensus 442 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~~gs~----------dg~I~v~d~~~~~~~~~l~~~~~~~~~~~ 510 (536)
|-++.+.+...... ......+++.+.|..| +.++++|+. .|.|.||....++.+..+..+.....+.+
T Consensus 756 D~nTf~vl~~hef~-~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~a 834 (1096)
T KOG1897|consen 756 DQNTFEVLSSHEFE-RNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYA 834 (1096)
T ss_pred cCCceeEEeecccc-ccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceee
Confidence 76665544433221 1122233444668777 778888852 47888888877545544443332222232
Q ss_pred EeecCCCCCEEEEEccCCeEEEEec
Q 009380 511 FHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 511 ~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
+.. .++.+||+-+. .|++|+.
T Consensus 835 L~~--fngkllA~In~--~vrLye~ 855 (1096)
T KOG1897|consen 835 LVE--FNGKLLAGINQ--SVRLYEW 855 (1096)
T ss_pred hhh--hCCeEEEecCc--EEEEEEc
Confidence 322 25667766654 5777653
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.12 Score=50.04 Aligned_cols=205 Identities=14% Similarity=0.041 Sum_probs=112.9
Q ss_pred EEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe---
Q 009380 288 IVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--- 364 (536)
Q Consensus 288 l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--- 364 (536)
-.|.++...++.+--..+.|.-|+..++...... ....+.++.....+ ..|++ +.. .+.+++..++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~-~p~~~~~~~~~d~~-g~Lv~-~~~-g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP-SPGGFSSGALIDAG-GRLIA-CEH-GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE-CCCCcccceeecCC-CeEEE-Ecc-ccEEEeccCCceeEEecccc
Confidence 3567776345666667888999998877554433 33344444444333 24443 333 46677766555422222
Q ss_pred --ccCCCeEEEEEecCCCCEEEEEe-----C-----CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEE
Q 009380 365 --LHEARINTIDFNPRNPNIMATSS-----T-----DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATT 432 (536)
Q Consensus 365 --~h~~~i~~i~~~p~~~~~l~s~s-----~-----dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~ 432 (536)
......+.+...|+|..++-+-+ . -|.|+.+|. .+. .......+-..-+.|+||||++.|+.+
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~----~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG----VVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCC----EEEeecCcEEecCceEECCCCCEEEEE
Confidence 11245678888898843333322 1 133444443 211 222223445566889999999877776
Q ss_pred eC-CCcEEEEeCCC--CC---cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC-cEEEEcCCccccceeccCCcee
Q 009380 433 SF-DDTIGIWSGVN--FE---NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR-TVEVISPAQRRSVATLQSPYIS 505 (536)
Q Consensus 433 s~-dg~I~iwd~~~--~~---~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg-~I~v~d~~~~~~~~~l~~~~~~ 505 (536)
.. .+.|.-|++.. +. ....+......+..-. ++...+|.+.+++-.+| .|.+|+.. ++++..+..+...
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG---~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~ 256 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDG---MAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKR 256 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCc---eEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCC
Confidence 65 47788887752 11 1111111111121111 33456777765555554 89999999 8888887765433
No 374
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0014 Score=66.40 Aligned_cols=94 Identities=18% Similarity=0.103 Sum_probs=76.4
Q ss_pred CCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCcee-EEEecCCCCCEEEEEECCCeEEEEECCCCccc
Q 009380 282 LGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF-SLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA 360 (536)
Q Consensus 282 ~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~-~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~ 360 (536)
...|.-+.|+|.- .++|.+..+|.|.+..++-.+...+--++..++ ++||.|+| ++|++|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKM-DLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCcc-chhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCce
Confidence 3568889999998 999999999999999888544444433666777 99999998 99999999999999999998877
Q ss_pred eeEe-ccCCCeEEEEEec
Q 009380 361 TEWL-LHEARINTIDFNP 377 (536)
Q Consensus 361 ~~~~-~h~~~i~~i~~~p 377 (536)
..+. .-...|.++.|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 6632 3456788888875
No 375
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.20 E-value=0.17 Score=47.03 Aligned_cols=196 Identities=12% Similarity=0.058 Sum_probs=112.2
Q ss_pred EEeecCCC--ceeEEEecCCCCCEEEEEECCC--eEEEEECCCCccceeEeccC-CCeEEEEEecCCCCEEEEEeCCCcE
Q 009380 318 DLVYSSEY--AVFSLSQQPNNVNTLYFGEGQG--GLNIWDVRSRKSATEWLLHE-ARINTIDFNPRNPNIMATSSTDGTA 392 (536)
Q Consensus 318 ~~~~~~~~--~i~~l~~~~~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~-~~i~~i~~~p~~~~~l~s~s~dg~i 392 (536)
...+.|+. -...+.|..++ .++-+.+.-| .|+.+|+.+++......... ----.|+... ..++.-.=.++..
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEE
T ss_pred EEECCCCCcccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeE
Confidence 34455543 34567776555 4555666555 79999999998766655322 2234455553 2455555568899
Q ss_pred EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee-EEEEcC
Q 009380 393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF-RAIWGW 471 (536)
Q Consensus 393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 471 (536)
.+||..+.+ ........+.=+.++ .++..|+.+.....|.++|..+++....+.... .+..+..+ .+.|-
T Consensus 113 f~yd~~tl~-----~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~-~g~pv~~LNELE~i- 183 (264)
T PF05096_consen 113 FVYDPNTLK-----KIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD-NGRPVSNLNELEYI- 183 (264)
T ss_dssp EEEETTTTE-----EEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE-TTEE---EEEEEEE-
T ss_pred EEEccccce-----EEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE-CCEECCCcEeEEEE-
Confidence 999998753 334444455666777 467778888778889999999888777664322 12222211 12232
Q ss_pred CCCEEEEEcCCCcEEEEcCCccccceeccC---------Cc----eeeeeeeEeecCCCCCEEEEEc
Q 009380 472 DDSCVFIGNMTRTVEVISPAQRRSVATLQS---------PY----ISAIPCRFHAHPHQVGTLAGAT 525 (536)
Q Consensus 472 ~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~---------~~----~~~~~~~~~~~p~~~~~lasgs 525 (536)
+|...|=.-....|...|..+|+++..+.. .. ...+-.-++++|..+.+++||=
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 565555555566777888888877554421 01 1234467899887767777763
No 376
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.23 Score=46.25 Aligned_cols=327 Identities=12% Similarity=0.110 Sum_probs=174.4
Q ss_pred cccceecccc-cceeeeecCCCCcccccccccccccccccccceEEecccccCcc--ccccc-cCCceEEEEEEecCCcc
Q 009380 174 NLGFVIKDEF-NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE--NIARI-MPGRITQMKFLPCSDVR 249 (536)
Q Consensus 174 ~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~--~~~~~-~~~~I~~v~~~p~~~~~ 249 (536)
.....+.||. ..|..+.....-...... ..---+.+|+...... .+... ..+-+..+.++. +
T Consensus 32 ~v~~~~vghfg~~vsavdv~~~ya~v~qG----------~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse----~ 97 (370)
T COG5276 32 HVGYAYVGHFGKGVSAVDVRGAYAYVGQG----------FILAILDITNVSLQTHDVLLSVINARDLFADVRVSE----E 97 (370)
T ss_pred ccceEEeeeccCCcccccccccccccccC----------ceEeeccccCcccccCcceEEEEehhhhhheeEecc----c
Confidence 3445677777 666666665554444322 0000234455432221 12222 256677888865 6
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe---ec-CCC
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV---YS-SEY 325 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~---~~-~~~ 325 (536)
++..+..+.-++|.|+.+... .....+-.-.+--.++.. .| ++.+.+..|.-+.+.|+.+...-.+ +. ...
T Consensus 98 yvyvad~ssGL~IvDIS~P~s--P~~~~~lnt~gyaygv~v--sG-n~aYVadlddgfLivdvsdpssP~lagrya~~~~ 172 (370)
T COG5276 98 YVYVADWSSGLRIVDISTPDS--PTLIGFLNTDGYAYGVYV--SG-NYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGG 172 (370)
T ss_pred EEEEEcCCCceEEEeccCCCC--cceeccccCCceEEEEEe--cC-CEEEEeeccCcEEEEECCCCCCceeeeeeccCCC
Confidence 777777888899999997542 222222222233344444 45 7888888666677889876432222 22 223
Q ss_pred ceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 009380 326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD 403 (536)
Q Consensus 326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~ 403 (536)
....++.+ | ++.+++..|+.+.+.|+.....-.-+. .....+.++..+++. -+++.. +--+.+-|....+
T Consensus 173 d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr-~y~vvy--~egvlivd~s~~s-- 244 (370)
T COG5276 173 DTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR-AYLVVY--DEGVLIVDVSGPS-- 244 (370)
T ss_pred CceeEEEe--c-CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCe-eEEEEc--ccceEEEecCCCC--
Confidence 33556665 3 688889999999999998764322111 123367888888733 233333 3447777877643
Q ss_pred CCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380 404 KPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR 483 (536)
Q Consensus 404 ~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg 483 (536)
.+..+.......++.--.+.-.+++......+.-+.+-|+.+........+-...+.....+ .-.+.++..+..+
T Consensus 245 sp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi----~ay~~y~yiadkn- 319 (370)
T COG5276 245 SPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGI----RAYGNYNYIADKN- 319 (370)
T ss_pred CceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccce----EEecCeeEeccCC-
Confidence 12233333333332221233357777777777778888877654443332222111111111 1134455555544
Q ss_pred cEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 484 TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 484 ~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
...+.+....+.+....+.......+.+... .+.+.+...+|-+.||+.
T Consensus 320 ~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~---~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 320 TGAVVDASPPSMMDKRPGRPTIGQSCDVSVD---TQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ceEEEeCCChhhcccccCcceEeeecceEEE---eeEEEEeecCCCEEEEEe
Confidence 4444555444333333332222223344442 357888899999999974
No 377
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.10 E-value=0.0012 Score=40.76 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=33.7
Q ss_pred CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEE
Q 009380 273 NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD 311 (536)
Q Consensus 273 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd 311 (536)
.....+..|...|.++.|++.+ ..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 4566777899999999999988 8999999999999996
No 378
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.09 E-value=0.0013 Score=40.60 Aligned_cols=38 Identities=26% Similarity=0.542 Sum_probs=32.6
Q ss_pred ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEe
Q 009380 358 KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWD 396 (536)
Q Consensus 358 ~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwd 396 (536)
+++..+..|...|.++.|++.+ .++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 3456667788999999999976 7999999999999996
No 379
>PHA02713 hypothetical protein; Provisional
Probab=97.09 E-value=0.032 Score=59.08 Aligned_cols=184 Identities=8% Similarity=0.023 Sum_probs=92.6
Q ss_pred CEEEEEECC------CeEEEEECCCCeEEEeecCCCc--eeEEEecCCCCCEEEEEECCC-----eEEEEECCCCccc--
Q 009380 296 SKIFTSCYD------GLIRLMDAEKEVFDLVYSSEYA--VFSLSQQPNNVNTLYFGEGQG-----GLNIWDVRSRKSA-- 360 (536)
Q Consensus 296 ~~l~s~s~d------g~I~vwd~~~~~~~~~~~~~~~--i~~l~~~~~~~~~l~~g~~dg-----~i~i~d~~~~~~~-- 360 (536)
..++.|+.+ ..+..||..+........-..+ -.+++.. ++ .+.+.|+.++ .+..||..+.+-.
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-~g-~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-DD-TIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-CC-EEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 666777753 3477889888765443322111 1122222 23 5677777654 4888998865321
Q ss_pred eeEeccCCCeEEEEEecCCCCEEEEEeCCC-----------------------cEEEEeCCCCCCCCCCcceeecccCce
Q 009380 361 TEWLLHEARINTIDFNPRNPNIMATSSTDG-----------------------TACIWDLRSMATDKPEPMKVLSHKRAV 417 (536)
Q Consensus 361 ~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg-----------------------~i~iwdl~~~~~~~~~~~~~~~~~~~v 417 (536)
..+.........+.+ ++ .+.+.|+.++ .+..||..+.+-.. ...........
T Consensus 383 ~~mp~~r~~~~~~~~--~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~--v~~m~~~r~~~ 457 (557)
T PHA02713 383 PDMPIALSSYGMCVL--DQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET--LPNFWTGTIRP 457 (557)
T ss_pred CCCCcccccccEEEE--CC-EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee--cCCCCcccccC
Confidence 111111111122222 24 6777777553 47778877643111 11111111111
Q ss_pred eEEEEccCCCeEEEEeCCC------cEEEEeCCC-C--CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC--cEE
Q 009380 418 HSAYFSPSGSSLATTSFDD------TIGIWSGVN-F--ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR--TVE 486 (536)
Q Consensus 418 ~~l~~sp~g~~l~t~s~dg------~I~iwd~~~-~--~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg--~I~ 486 (536)
..+.+ +|+..+.|+.++ .+..||..+ . .....+... +.... + -.-+|.+.++|+.++ .+.
T Consensus 458 ~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~----r~~~~--~-~~~~~~iyv~Gg~~~~~~~e 528 (557)
T PHA02713 458 GVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR----LSALH--T-ILHDNTIMMLHCYESYMLQD 528 (557)
T ss_pred cEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc----cccce--e-EEECCEEEEEeeecceeehh
Confidence 12222 567777777542 367888775 2 222222111 11111 1 122678888998887 788
Q ss_pred EEcCCcccc
Q 009380 487 VISPAQRRS 495 (536)
Q Consensus 487 v~d~~~~~~ 495 (536)
.||..+.+-
T Consensus 529 ~yd~~~~~W 537 (557)
T PHA02713 529 TFNVYTYEW 537 (557)
T ss_pred hcCcccccc
Confidence 888877643
No 380
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.09 E-value=0.051 Score=53.72 Aligned_cols=204 Identities=11% Similarity=0.070 Sum_probs=97.1
Q ss_pred CccEEEEEe-CCCcEEEEECCCCCCCCCceEEecc---CC----CCEEEEEEecCCCCEEEEEEC------CCeEEEEEC
Q 009380 247 DVRMVVAGS-KLGNITFWNLDSQQDEDNGIYLFRT---HL----GPISGIVTQQYCLSKIFTSCY------DGLIRLMDA 312 (536)
Q Consensus 247 ~~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~---h~----~~V~~l~~~~~~~~~l~s~s~------dg~I~vwd~ 312 (536)
+.++|+..+ ..+.|+|.|+.+........+.+.. +. ..-..+...|+| ..++|+-. -|-+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCCCCcEEEEcC
Confidence 456777666 6789999999865443344444432 11 112334455777 78887633 255777787
Q ss_pred CCCeEEEeecC----CCceeEEEecCCCCCEEEEEEC--------------------CCeEEEEECCCCccceeEeccCC
Q 009380 313 EKEVFDLVYSS----EYAVFSLSQQPNNVNTLYFGEG--------------------QGGLNIWDVRSRKSATEWLLHEA 368 (536)
Q Consensus 313 ~~~~~~~~~~~----~~~i~~l~~~~~~~~~l~~g~~--------------------dg~i~i~d~~~~~~~~~~~~h~~ 368 (536)
++-.+.-.... ..--..+-|.|.. +.+++... ..++.+||+.+.+.++++..-..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 76544433322 2334566777876 67777543 34799999999999999884432
Q ss_pred --CeEEEEEe--cCCCCEEEEEeCCCcEEEEeC-CCCCCCCCCcceee-----------------cccCceeEEEEccCC
Q 009380 369 --RINTIDFN--PRNPNIMATSSTDGTACIWDL-RSMATDKPEPMKVL-----------------SHKRAVHSAYFSPSG 426 (536)
Q Consensus 369 --~i~~i~~~--p~~~~~l~s~s~dg~i~iwdl-~~~~~~~~~~~~~~-----------------~~~~~v~~l~~sp~g 426 (536)
....|.|. |+...-|+.+....+|..|-- ..++-....+..+. .-..-|+.|..|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 24456665 434334555555555555533 22210001111111 113457999999999
Q ss_pred CeEEEEe-CCCcEEEEeCCCCCcceEE
Q 009380 427 SSLATTS-FDDTIGIWSGVNFENTSMI 452 (536)
Q Consensus 427 ~~l~t~s-~dg~I~iwd~~~~~~~~~~ 452 (536)
++|..++ .+|.|+.||+.+.......
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 9998887 5899999999876554443
No 381
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.07 E-value=0.41 Score=48.22 Aligned_cols=147 Identities=15% Similarity=0.163 Sum_probs=92.9
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCe-----EEEeecCCCceeEEEecC---C-CCCEEEEEECCCeEEEEECCC--Cc--
Q 009380 292 QYCLSKIFTSCYDGLIRLMDAEKEV-----FDLVYSSEYAVFSLSQQP---N-NVNTLYFGEGQGGLNIWDVRS--RK-- 358 (536)
Q Consensus 292 ~~~~~~l~s~s~dg~I~vwd~~~~~-----~~~~~~~~~~i~~l~~~~---~-~~~~l~~g~~dg~i~i~d~~~--~~-- 358 (536)
+++...|++||..|.++||+..... .........+|..+..-. . ..+.|++ -.-..+.+|.+.. +.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 4455799999999999999986543 223334567888887643 2 2234444 5556888888742 11
Q ss_pred -----cceeEeccC--CCeEEEEEecCC----CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCC
Q 009380 359 -----SATEWLLHE--ARINTIDFNPRN----PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS 427 (536)
Q Consensus 359 -----~~~~~~~h~--~~i~~i~~~p~~----~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 427 (536)
.+..+..|. .....+++-|-| ..++..-+.||.+.+|+-+.. ........---.-.+.|.+.-.
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-----~f~~~lp~~llPgPl~Y~~~tD 187 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-----AFSRFLPDFLLPGPLCYCPRTD 187 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-----EEEEEcCCCCCCcCeEEeecCC
Confidence 112222232 334445554432 368889999999999997652 1112222222334478888888
Q ss_pred eEEEEeCCCcEEEEeCC
Q 009380 428 SLATTSFDDTIGIWSGV 444 (536)
Q Consensus 428 ~l~t~s~dg~I~iwd~~ 444 (536)
.|++++.+..|..|...
T Consensus 188 sfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 188 SFVTASSSWTLECYKYQ 204 (418)
T ss_pred EEEEecCceeEEEecHH
Confidence 89999999999999753
No 382
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.03 E-value=0.33 Score=48.75 Aligned_cols=88 Identities=22% Similarity=0.075 Sum_probs=54.9
Q ss_pred ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc-CCCCceeeeeEEEE-------c----C-CCCEEEE-
Q 009380 413 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN-NQTGRWISSFRAIW-------G----W-DDSCVFI- 478 (536)
Q Consensus 413 ~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------s----~-~g~~l~~- 478 (536)
....+.+++.+|++++.++...=|.|.++|+.++..++..+.- .....|+......- + + ...+|++
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 4456889999999998888878899999999887766655311 11111221110000 0 0 0123333
Q ss_pred EcCCCcEEEEcCCccccceecc
Q 009380 479 GNMTRTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 479 gs~dg~I~v~d~~~~~~~~~l~ 500 (536)
.-.-|.|.||.+..|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 4556889999999987776664
No 383
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.32 Score=45.16 Aligned_cols=236 Identities=12% Similarity=0.119 Sum_probs=124.4
Q ss_pred EEEEecCCCCEEEEEECCCe-EEEEECCCCeEEEeec-CC--CceeEEEecCCCCCEEEEEECC-----CeEEEEECCCC
Q 009380 287 GIVTQQYCLSKIFTSCYDGL-IRLMDAEKEVFDLVYS-SE--YAVFSLSQQPNNVNTLYFGEGQ-----GGLNIWDVRSR 357 (536)
Q Consensus 287 ~l~~~~~~~~~l~s~s~dg~-I~vwd~~~~~~~~~~~-~~--~~i~~l~~~~~~~~~l~~g~~d-----g~i~i~d~~~~ 357 (536)
.|.|+|..+.-++.+-.-|+ ..++|.++.....+.. .+ .---.=+|+|++ .+|+..-.| |.|-|||.+.+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG-~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG-RLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC-cEEEeecCCCCCCCceEEEEecccc
Confidence 57777776666666666554 4577887654322221 10 111123689998 788776543 78999999854
Q ss_pred -ccceeEeccCCCeEEEEEecCCCCEEEEEeC------------------CCcEEEEeCCCCCCCCCCcceeecccCcee
Q 009380 358 -KSATEWLLHEARINTIDFNPRNPNIMATSST------------------DGTACIWDLRSMATDKPEPMKVLSHKRAVH 418 (536)
Q Consensus 358 -~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~------------------dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~ 418 (536)
+.+.++..|.-.-..+.|.+|| ..++.+.. .-.+.+.|..+++-.....+....+..+|.
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DG-rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADG-RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred cceecccccCCcCcceeEEecCC-cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 3467788888888899999998 45555431 112333343333211111222223566789
Q ss_pred EEEEccCCCeEEEEeCCCc-----EEEEeCCCCCcceEEeccCC----CCceeeeeEEEEcCCCCEEEEEcC-CCcEEEE
Q 009380 419 SAYFSPSGSSLATTSFDDT-----IGIWSGVNFENTSMIHHNNQ----TGRWISSFRAIWGWDDSCVFIGNM-TRTVEVI 488 (536)
Q Consensus 419 ~l~~sp~g~~l~t~s~dg~-----I~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~g~~l~~gs~-dg~I~v~ 488 (536)
.++..+||..++.+-+.|. --+=-...++++..+..... ....+.. ++.+.+..+++..+. .+...+|
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigs--iA~n~~~glV~lTSP~GN~~vi~ 307 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGS--IAANRRDGLVALTSPRGNRAVIW 307 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhh--eeecccCCeEEEecCCCCeEEEE
Confidence 9999999986655544332 00111122233322211100 0011122 222333345444444 4567899
Q ss_pred cCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380 489 SPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533 (536)
Q Consensus 489 d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW 533 (536)
|..+|..+..-.-..... +.. ...-++..+.+|.+.++
T Consensus 308 da~tG~vv~~a~l~daaG----va~---~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 308 DAATGAVVSEAALPDAAG----VAA---AKGGFAVSSGQGRIIFY 345 (366)
T ss_pred EcCCCcEEeccccccccc----cee---ccCceEEecCCceEEec
Confidence 999997765433221111 111 12445555666777654
No 384
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.94 E-value=0.091 Score=55.65 Aligned_cols=232 Identities=13% Similarity=0.101 Sum_probs=120.4
Q ss_pred CccEEEEEeCCC------cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC------CeEEEEECCC
Q 009380 247 DVRMVVAGSKLG------NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD------GLIRLMDAEK 314 (536)
Q Consensus 247 ~~~~l~tg~~dg------~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d------g~I~vwd~~~ 314 (536)
.+.+++.|+.++ .+..||..+.. ......+. +...-.+++...+ ...++|+.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~--w~~~a~m~-~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNE--WSSLAPMP-SPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCc--EeecCCCC-cccccccEEEECC--EEEEEccccCCCcccceEEEecCCC
Confidence 456777777764 56777777632 12222222 2333445555543 678888888 3577888888
Q ss_pred CeEEEeecCCCceeEEEecCCCCCEEEEEECCC-----eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC
Q 009380 315 EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG-----GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD 389 (536)
Q Consensus 315 ~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg-----~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d 389 (536)
.+......-...=..+....-++.+.++|+.|| +|-.||..+.+--..-. ......+.....-++.+.++|+.+
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred CceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcC
Confidence 776554332221111222112236788888886 47788887654321111 111222222222234788888855
Q ss_pred C------cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCc-----EEEEeCCCCCcceEEeccCCC
Q 009380 390 G------TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDT-----IGIWSGVNFENTSMIHHNNQT 458 (536)
Q Consensus 390 g------~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~-----I~iwd~~~~~~~~~~~~~~~~ 458 (536)
+ ++..||..+..-....+.... ......+.+ ++.+.+.||.|+. |..||..+.+-...-.- ..
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~--R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m--~~ 511 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTR--RSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM--TS 511 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccc--cccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccC--cc
Confidence 4 467888887642222222211 111112222 5778888887763 77788765443222100 01
Q ss_pred CceeeeeEEEEcCCCCEEEEEcCCC-----cEEEEcCCcc
Q 009380 459 GRWISSFRAIWGWDDSCVFIGNMTR-----TVEVISPAQR 493 (536)
Q Consensus 459 ~~~~~~~~~~~s~~g~~l~~gs~dg-----~I~v~d~~~~ 493 (536)
.+... ....-++...++|+.|+ +|..||..+.
T Consensus 512 ~rs~~---g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 512 PRSAV---GVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccc---cEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 10000 01123567788888775 4677766554
No 385
>PHA02713 hypothetical protein; Provisional
Probab=96.92 E-value=0.045 Score=58.02 Aligned_cols=187 Identities=8% Similarity=0.086 Sum_probs=94.3
Q ss_pred CccEEEEEeCC------CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC-----eEEEEECCCC
Q 009380 247 DVRMVVAGSKL------GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG-----LIRLMDAEKE 315 (536)
Q Consensus 247 ~~~~l~tg~~d------g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg-----~I~vwd~~~~ 315 (536)
++.+++.|+.+ ..+..||..+.. ...+..+....... +++. -++ ...+.||.++ ++..||..+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~~~m~~~R~~~-~~~~-~~g-~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKI--HVELPPMIKNRCRF-SLAV-IDD-TIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCe--EeeCCCCcchhhce-eEEE-ECC-EEEEECCcCCCCCCceEEEEECCCC
Confidence 66788888754 246778876532 11111111111111 2222 234 6667777654 4888999887
Q ss_pred eEEEeecCCCcee--EEEecCCCCCEEEEEECCC-----------------------eEEEEECCCCccc--eeEeccCC
Q 009380 316 VFDLVYSSEYAVF--SLSQQPNNVNTLYFGEGQG-----------------------GLNIWDVRSRKSA--TEWLLHEA 368 (536)
Q Consensus 316 ~~~~~~~~~~~i~--~l~~~~~~~~~l~~g~~dg-----------------------~i~i~d~~~~~~~--~~~~~h~~ 368 (536)
..........+.. +++.. ++ .+.++|+.++ .+..||..+.+-. ..+.....
T Consensus 378 ~W~~~~~mp~~r~~~~~~~~-~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~ 455 (557)
T PHA02713 378 KWKMLPDMPIALSSYGMCVL-DQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI 455 (557)
T ss_pred eEEECCCCCcccccccEEEE-CC-EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc
Confidence 7655433222111 11211 33 5666676542 4777888765432 11111111
Q ss_pred CeEEEEEecCCCCEEEEEeCC------CcEEEEeCCC-CCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC--cEE
Q 009380 369 RINTIDFNPRNPNIMATSSTD------GTACIWDLRS-MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD--TIG 439 (536)
Q Consensus 369 ~i~~i~~~p~~~~~l~s~s~d------g~i~iwdl~~-~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg--~I~ 439 (536)
. .+++... + .+.+.|+.+ ..+..||..+ .+-. ....+.........+.+ +|++.++|+.|+ .+.
T Consensus 456 ~-~~~~~~~-~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~--~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e 528 (557)
T PHA02713 456 R-PGVVSHK-D-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWE--LITTTESRLSALHTILH--DNTIMMLHCYESYMLQD 528 (557)
T ss_pred c-CcEEEEC-C-EEEEEeCCCCCCccceeEEEecCCCCCCee--EccccCcccccceeEEE--CCEEEEEeeecceeehh
Confidence 1 1233332 3 577777654 2467899886 3311 11111122223333333 688889999888 677
Q ss_pred EEeCCCCC
Q 009380 440 IWSGVNFE 447 (536)
Q Consensus 440 iwd~~~~~ 447 (536)
.||..+.+
T Consensus 529 ~yd~~~~~ 536 (557)
T PHA02713 529 TFNVYTYE 536 (557)
T ss_pred hcCccccc
Confidence 77765543
No 386
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.89 E-value=0.32 Score=52.72 Aligned_cols=74 Identities=15% Similarity=0.290 Sum_probs=49.5
Q ss_pred CceeEEEecCCCCCEEEEEECCCeEEEEECCC----------Ccc---ceeE--------eccCCCeEEEEEecCC--CC
Q 009380 325 YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS----------RKS---ATEW--------LLHEARINTIDFNPRN--PN 381 (536)
Q Consensus 325 ~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~----------~~~---~~~~--------~~h~~~i~~i~~~p~~--~~ 381 (536)
-.|..+.++++| .+++..+..| |.|..+.. ++. .+++ ..+...|..+.|||.+ ..
T Consensus 85 f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 468889999999 6777777654 55554421 111 1111 1234578999999974 35
Q ss_pred EEEEEeCCCcEEEEeCCCC
Q 009380 382 IMATSSTDGTACIWDLRSM 400 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~~ 400 (536)
.|+.-..|+++++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 6777777999999999764
No 387
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.88 E-value=0.0014 Score=58.29 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=80.0
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC-ccceeEeccCCCeEEEE
Q 009380 296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR-KSATEWLLHEARINTID 374 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~i~ 374 (536)
..|..-+.||.|+-+++...+..... ...+.+..--+.....+++|+.+|.|.+|...-. .....+..-...|-++-
T Consensus 31 ~~l~~~sa~~~v~~~~~~k~k~s~rs--e~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 31 HLLRATSADGLVRERKVRKHKESCRS--ERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhhccccCCcccccchhhhhhhhhhh--hhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 34555567888888887654321111 1111111112222367999999999999988632 21112222223343333
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc-CceeEEEEccCCCeEEEE--eCCCcEEEEeCCC
Q 009380 375 FNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK-RAVHSAYFSPSGSSLATT--SFDDTIGIWSGVN 445 (536)
Q Consensus 375 ~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~-~~v~~l~~sp~g~~l~t~--s~dg~I~iwd~~~ 445 (536)
-.-+...+..+++.||.|+.|++.-.+ ..-....|. .++..+..+..+..++.+ |.|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k----~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNK----VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCc----eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 332233589999999999999987642 222222454 455555555555556655 6666666676653
No 388
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.80 E-value=0.2 Score=54.75 Aligned_cols=194 Identities=11% Similarity=0.082 Sum_probs=108.8
Q ss_pred CEEEEEECCCeEEEEECCCCccceeEeccCCC--------eEEEEEecC---------------CCCEEEEEeCCCcEEE
Q 009380 338 NTLYFGEGQGGLNIWDVRSRKSATEWLLHEAR--------INTIDFNPR---------------NPNIMATSSTDGTACI 394 (536)
Q Consensus 338 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~--------i~~i~~~p~---------------~~~~l~s~s~dg~i~i 394 (536)
..+++++.++.|.-+|..+|+.+.++...... ...+.+... ....++.++.|+.|.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 47788888888888898888877666532210 122333211 1136777888999999
Q ss_pred EeCCCCCCCCCCcceeecccCce-------------eEEEEcc--CCCeEEEEeC----------CCcEEEEeCCCCCcc
Q 009380 395 WDLRSMATDKPEPMKVLSHKRAV-------------HSAYFSP--SGSSLATTSF----------DDTIGIWSGVNFENT 449 (536)
Q Consensus 395 wdl~~~~~~~~~~~~~~~~~~~v-------------~~l~~sp--~g~~l~t~s~----------dg~I~iwd~~~~~~~ 449 (536)
.|.++++ .+ -.++..+.| ..+.-.| .+..+++++. +|.|+-||..+++..
T Consensus 275 LDA~TGk----~~-W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 275 LDADTGK----LC-EDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EECCCCC----EE-EEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 9999875 22 111211111 1122223 2445666643 688999999999988
Q ss_pred eEEeccCCC-------Cc-eeee-----eEEEEcCCCCEEEEEc------------------CCCcEEEEcCCcccccee
Q 009380 450 SMIHHNNQT-------GR-WISS-----FRAIWGWDDSCVFIGN------------------MTRTVEVISPAQRRSVAT 498 (536)
Q Consensus 450 ~~~~~~~~~-------~~-~~~~-----~~~~~s~~g~~l~~gs------------------~dg~I~v~d~~~~~~~~~ 498 (536)
..+....+. +. +... ...++++....++.+. ..+.|.-.|..+|+....
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 776532111 00 0000 0133444444444432 124577778889988887
Q ss_pred ccCCceeeee-------eeEeecCCCC---CEEEEEccCCeEEEEecC
Q 009380 499 LQSPYISAIP-------CRFHAHPHQV---GTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 499 l~~~~~~~~~-------~~~~~~p~~~---~~lasgs~Dg~v~iW~~d 536 (536)
++..|..... .-+...-.++ ..++.++.+|.+++.|.+
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~ 477 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRR 477 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECC
Confidence 7763322211 1111111133 278999999999998853
No 389
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.019 Score=57.23 Aligned_cols=139 Identities=12% Similarity=0.136 Sum_probs=95.9
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC------CEEEEEECCCeEEEEECCCC---eEEEe
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL------SKIFTSCYDGLIRLMDAEKE---VFDLV 320 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~------~~l~s~s~dg~I~vwd~~~~---~~~~~ 320 (536)
+|.++.....|+-.|++. ++.+..+.-|.. |+-+.+.|+.. ..-+.|-.|..|.-||.+-. ++...
T Consensus 348 il~~~~~~~~l~klDIE~----GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIER----GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred EeeCCCCcCcceeeeccc----ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 344555556677777776 788888888877 77777877641 22345666888999998732 22222
Q ss_pred e----cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380 321 Y----SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIW 395 (536)
Q Consensus 321 ~----~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw 395 (536)
. .......|++-..+| ++++|+.+|.|++||- .+.. -..+.+...+|..|..+.+|..+|+|| +..+.+-
T Consensus 423 q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi 497 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLI 497 (644)
T ss_pred eccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEE
Confidence 2 233456676666665 8999999999999997 4444 445667889999999999996555554 5677777
Q ss_pred eCC
Q 009380 396 DLR 398 (536)
Q Consensus 396 dl~ 398 (536)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 754
No 390
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.69 E-value=0.2 Score=53.21 Aligned_cols=152 Identities=11% Similarity=0.055 Sum_probs=84.6
Q ss_pred CCCEEEEEEecCCCCEEEEEE------CC--CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEEC--------
Q 009380 282 LGPISGIVTQQYCLSKIFTSC------YD--GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEG-------- 345 (536)
Q Consensus 282 ~~~V~~l~~~~~~~~~l~s~s------~d--g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~-------- 345 (536)
...+...+++|++ ..++..- .| ..|.+++..... ..+.. ....+.-.|+|++ ..|++...
T Consensus 349 ~~~vsspaiSpdG-~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-g~~~t~PsWspDG-~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 349 MGNITSAALSRSG-RQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-GHSLTRPSWSLDA-DAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccCcccceECCCC-CEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-CCCCCCceECCCC-CceEEEecCcceEEEe
Confidence 3467889999999 6555443 23 356666653333 33322 2347888999997 44444432
Q ss_pred ----CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEE---EeCCCCCCCCCCcceee-cccCce
Q 009380 346 ----QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACI---WDLRSMATDKPEPMKVL-SHKRAV 417 (536)
Q Consensus 346 ----dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~i---wdl~~~~~~~~~~~~~~-~~~~~v 417 (536)
.+.+.+.++..+.... .....|..+.|+|||..+++.. +|.|++ -....+......+..+. .....+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 2344444554443322 2356799999999996544444 477776 33233221111112222 233446
Q ss_pred eEEEEccCCCeEEEEeCCCcEEEEeC
Q 009380 418 HSAYFSPSGSSLATTSFDDTIGIWSG 443 (536)
Q Consensus 418 ~~l~~sp~g~~l~t~s~dg~I~iwd~ 443 (536)
.++.|..++.++ ++..++...+|.+
T Consensus 500 ~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 500 VSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred ccceEecCCEEE-EEecCCCCceEEE
Confidence 889999988854 5554444444543
No 391
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.04 Score=59.59 Aligned_cols=97 Identities=16% Similarity=0.220 Sum_probs=68.3
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCC
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEY 325 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~ 325 (536)
-+..++.|+..|+|...|+... -.....-..-.++|++++|+.+| ..++.|-.+|.|.+||+..++....+ .+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n---L~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN---LGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc---cchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 3457999999999999888752 11122223346889999999999 99999999999999999987655443 3333
Q ss_pred ---ceeEEEecCCCCCEEEEEECCCe
Q 009380 326 ---AVFSLSQQPNNVNTLYFGEGQGG 348 (536)
Q Consensus 326 ---~i~~l~~~~~~~~~l~~g~~dg~ 348 (536)
.|..+.+..++ ..++++...|.
T Consensus 174 p~t~vi~v~~t~~n-S~llt~D~~Gs 198 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQN-SKLLTSDTGGS 198 (1206)
T ss_pred ccceEEEEEEeCCC-cEEEEccCCCc
Confidence 34444444444 46777777776
No 392
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.66 E-value=0.0023 Score=56.96 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=63.2
Q ss_pred CEEEEEECCCeEEEEECCCC--eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC-CCeEE
Q 009380 296 SKIFTSCYDGLIRLMDAEKE--VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE-ARINT 372 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~~--~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-~~i~~ 372 (536)
..++.|+.+|.|.+|..... .+.........|.++--.-+...+.++++.+|.|+.|++.-++.+.....|. ..+..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 78999999999999998732 1111222233444433333333689999999999999998877766666666 33333
Q ss_pred EEEecCCCCEEEEE--eCCCcEEEEeCCC
Q 009380 373 IDFNPRNPNIMATS--STDGTACIWDLRS 399 (536)
Q Consensus 373 i~~~p~~~~~l~s~--s~dg~i~iwdl~~ 399 (536)
......+ .+++.+ |.|..++.|++..
T Consensus 151 ~ivv~sd-~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSD-EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCC-ceEEeeccccchhhhhcchhh
Confidence 3333323 344444 5555566666554
No 393
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.66 E-value=0.18 Score=53.56 Aligned_cols=188 Identities=11% Similarity=0.083 Sum_probs=101.6
Q ss_pred CceEEEEEEecCCccEEEEEe------CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC----
Q 009380 235 GRITQMKFLPCSDVRMVVAGS------KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---- 304 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~------~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---- 304 (536)
..+.+.+++| +|..++... .|+.-.||-...+ ........+. ..+.-.|+|+| ..|++.+..
T Consensus 350 ~~vsspaiSp--dG~~vA~v~~~~~~~~d~~s~Lwv~~~g---g~~~~lt~g~--~~t~PsWspDG-~~lw~v~dg~~~~ 421 (591)
T PRK13616 350 GNITSAALSR--SGRQVAAVVTLGRGAPDPASSLWVGPLG---GVAVQVLEGH--SLTRPSWSLDA-DAVWVVVDGNTVV 421 (591)
T ss_pred cCcccceECC--CCCEEEEEEeecCCCCCcceEEEEEeCC---CcceeeecCC--CCCCceECCCC-CceEEEecCcceE
Confidence 4678999999 888887665 2443344433321 2222222332 37788999998 666666432
Q ss_pred --------CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEE---EECCCCcc-c---eeEe-ccCC
Q 009380 305 --------GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNI---WDVRSRKS-A---TEWL-LHEA 368 (536)
Q Consensus 305 --------g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i---~d~~~~~~-~---~~~~-~h~~ 368 (536)
+.+.+.++..+.... .....|..+.|+|+| ..++... +|.|++ -....|.. + ..+. .-..
T Consensus 422 ~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~ 497 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDG-VRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGD 497 (591)
T ss_pred EEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCC
Confidence 233333444443322 335679999999999 4544444 477877 44334431 1 1122 2233
Q ss_pred CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEE
Q 009380 369 RINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIG 439 (536)
Q Consensus 369 ~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~ 439 (536)
.+.++.|.+++. |+++..++...+|.+.-... .............+.+|+-+++ .|+....++.+.
T Consensus 498 ~~~~l~W~~~~~--L~V~~~~~~~~v~~v~vDG~-~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 498 TAVSLDWRTGDS--LVVGRSDPEHPVWYVNLDGS-NSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ccccceEecCCE--EEEEecCCCCceEEEecCCc-cccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 468899999773 44555555445555433211 1111111123566777777763 355556666333
No 394
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.58 E-value=0.44 Score=44.61 Aligned_cols=159 Identities=13% Similarity=0.131 Sum_probs=102.1
Q ss_pred cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC-CCCEEEEEEecCCCCEEEEEECCCeEEEEE
Q 009380 233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH-LGPISGIVTQQYCLSKIFTSCYDGLIRLMD 311 (536)
Q Consensus 233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd 311 (536)
....|.++.|+| +.+.|++......-.||=... +..+.++.-. -.---.|.+..++ .+.++--.++.+.++.
T Consensus 84 ~~~nvS~LTynp--~~rtLFav~n~p~~iVElt~~----GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~ 156 (316)
T COG3204 84 ETANVSSLTYNP--DTRTLFAVTNKPAAIVELTKE----GDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFT 156 (316)
T ss_pred ccccccceeeCC--CcceEEEecCCCceEEEEecC----CceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEE
Confidence 344599999999 777777777666655554433 5555544321 1223467787776 7777777788888887
Q ss_pred CCCCeEE-------Ee---ecC-CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc---ceeEecc-------CCCe
Q 009380 312 AEKEVFD-------LV---YSS-EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS---ATEWLLH-------EARI 370 (536)
Q Consensus 312 ~~~~~~~-------~~---~~~-~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~h-------~~~i 370 (536)
+...... .. ..+ +...-.++|.|.+ ..|+++-.-.-+.||.+..... +.....+ -..|
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 7644111 11 122 5678899999998 6777777766777777653321 1111111 2357
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380 371 NTIDFNPRNPNIMATSSTDGTACIWDLRS 399 (536)
Q Consensus 371 ~~i~~~p~~~~~l~s~s~dg~i~iwdl~~ 399 (536)
.++.|++...++++-+.+++.+.-.|...
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecCC
Confidence 78888887767888888888888887765
No 395
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.58 E-value=0.1 Score=55.26 Aligned_cols=215 Identities=12% Similarity=0.074 Sum_probs=114.7
Q ss_pred CEEEEEECC------CeEEEEECCCCeEEEeec--CCCceeEEEecCCCCCEEEEEECC------CeEEEEECCCCccce
Q 009380 296 SKIFTSCYD------GLIRLMDAEKEVFDLVYS--SEYAVFSLSQQPNNVNTLYFGEGQ------GGLNIWDVRSRKSAT 361 (536)
Q Consensus 296 ~~l~s~s~d------g~I~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~l~~g~~d------g~i~i~d~~~~~~~~ 361 (536)
.+++.|+.+ ..+..+|..++....... ....-.+++...+ .+.++|+.| .++..||.++.+-..
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC--EEEEEccccCCCcccceEEEecCCCCceec
Confidence 567777776 367888988886554433 3333455555544 577888888 357889988776322
Q ss_pred --eEeccCCCeEEEEEecCCCCEEEEEeCCCc-----EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC
Q 009380 362 --EWLLHEARINTIDFNPRNPNIMATSSTDGT-----ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF 434 (536)
Q Consensus 362 --~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~-----i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~ 434 (536)
.+....... +++.. ++.+.|+|+.||. |-.||..+.+-.. ...........-.+.+ +|.+.++||.
T Consensus 364 ~a~M~~~R~~~-~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~--va~m~~~r~~~gv~~~--~g~iYi~GG~ 436 (571)
T KOG4441|consen 364 VAPMNTKRSDF-GVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP--VAPMLTRRSGHGVAVL--GGKLYIIGGG 436 (571)
T ss_pred cCCccCccccc-eeEEE--CCEEEEEeccccccccccEEEecCCCCcccc--cCCCCcceeeeEEEEE--CCEEEEEcCc
Confidence 111111111 22222 3478899998864 7778887753111 1111111122222222 6888888886
Q ss_pred CC------cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC-----cEEEEcCCcccccee--ccC
Q 009380 435 DD------TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR-----TVEVISPAQRRSVAT--LQS 501 (536)
Q Consensus 435 dg------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg-----~I~v~d~~~~~~~~~--l~~ 501 (536)
++ ++..||..+..-...-.- ...+.-.. + -.-++.++++|+.|+ .|..||..+.+-... +..
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M--~~~R~~~g--~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPM--NTRRSGFG--V-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCc--ccccccce--E-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 54 467888765432221111 11111111 1 123677888888776 378899877643221 221
Q ss_pred CceeeeeeeEeecCCCCCEEEEEccCCe
Q 009380 502 PYISAIPCRFHAHPHQVGTLAGATGGGQ 529 (536)
Q Consensus 502 ~~~~~~~~~~~~~p~~~~~lasgs~Dg~ 529 (536)
...... .... ++...+.|+.||.
T Consensus 512 ~rs~~g--~~~~---~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 512 PRSAVG--VVVL---GGKLYAVGGFDGN 534 (571)
T ss_pred cccccc--EEEE---CCEEEEEecccCc
Confidence 111111 1222 4577788887775
No 396
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.45 E-value=0.18 Score=46.69 Aligned_cols=186 Identities=17% Similarity=0.108 Sum_probs=108.0
Q ss_pred EEEecCCccEEEEEeC-----CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEE------
Q 009380 241 KFLPCSDVRMVVAGSK-----LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRL------ 309 (536)
Q Consensus 241 ~~~p~~~~~~l~tg~~-----dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~v------ 309 (536)
.||| ||.+|.+.-. -|.|.|||.... ...+-.+..|.-.-..+.|.+|| ..++.+. |-|..
T Consensus 120 vfs~--dG~~LYATEndfd~~rGViGvYd~r~~---fqrvgE~~t~GiGpHev~lm~DG-rtlvvan--GGIethpdfgR 191 (366)
T COG3490 120 VFSP--DGRLLYATENDFDPNRGVIGVYDAREG---FQRVGEFSTHGIGPHEVTLMADG-RTLVVAN--GGIETHPDFGR 191 (366)
T ss_pred ccCC--CCcEEEeecCCCCCCCceEEEEecccc---cceecccccCCcCcceeEEecCC-cEEEEeC--CceecccccCc
Confidence 6899 9999887643 378999999854 56778888888888899999999 7777663 32333
Q ss_pred --------------EECCCCeEEEee-----cCCCceeEEEecCCCCCEEEEEECCCe-----EEEEECCCCccceeEe-
Q 009380 310 --------------MDAEKEVFDLVY-----SSEYAVFSLSQQPNNVNTLYFGEGQGG-----LNIWDVRSRKSATEWL- 364 (536)
Q Consensus 310 --------------wd~~~~~~~~~~-----~~~~~i~~l~~~~~~~~~l~~g~~dg~-----i~i~d~~~~~~~~~~~- 364 (536)
.|..++.++... .+...|..++..+++ ..++.+-..|. -.+=-.+.++.+.-+.
T Consensus 192 ~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~ 270 (366)
T COG3490 192 TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDL 270 (366)
T ss_pred cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCCcCcccCC
Confidence 332333221111 123456777777776 33333322221 1111112333333332
Q ss_pred ------ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcE
Q 009380 365 ------LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTI 438 (536)
Q Consensus 365 ------~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I 438 (536)
.....|-+|+.+.+...+.+|+=.-+...+||..++. +.... .-..+..+.- ...-|++.+.+|.+
T Consensus 271 pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~-----vv~~a-~l~daaGva~--~~~gf~vssg~G~~ 342 (366)
T COG3490 271 PEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA-----VVSEA-ALPDAAGVAA--AKGGFAVSSGQGRI 342 (366)
T ss_pred CHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc-----EEecc-ccccccccee--ccCceEEecCCceE
Confidence 2335678889887664445555455667899999874 21111 1112222333 33447777888999
Q ss_pred EEEeC
Q 009380 439 GIWSG 443 (536)
Q Consensus 439 ~iwd~ 443 (536)
.++.-
T Consensus 343 ~~~s~ 347 (366)
T COG3490 343 IFYSR 347 (366)
T ss_pred Eeccc
Confidence 88853
No 397
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.43 E-value=0.71 Score=50.51 Aligned_cols=190 Identities=9% Similarity=0.077 Sum_probs=96.6
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEeecCCCcee-------------EEEecC--CCCCEEEEEEC----------CCeEE
Q 009380 296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF-------------SLSQQP--NNVNTLYFGEG----------QGGLN 350 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~-------------~l~~~~--~~~~~l~~g~~----------dg~i~ 350 (536)
..|+.++.|+.|.-.|.++|+....+..++.|. .+.-.| .+ ..+++|+. +|.|+
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccccCCCcEEE
Confidence 588899999999999999998877665444331 011111 12 46777753 68899
Q ss_pred EEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC-cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeE
Q 009380 351 IWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG-TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSL 429 (536)
Q Consensus 351 i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg-~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 429 (536)
-+|.++|+.+..+..-....... .+.+ .....++.+. ...-+|...+ .+ ....... +..+....+..
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~--~~~g-~~~~~gg~n~W~~~s~D~~~g-----lv--y~ptGn~--~pd~~g~~r~~ 407 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAP--PAPG-ETYTRNTPNSWSVASYDEKLG-----LV--YLPMGNQ--TPDQWGGDRTP 407 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccC--CCCC-CEeccCCCCccCceEEcCCCC-----eE--EEeCCCc--cccccCCcccc
Confidence 99999999987776211111110 0112 2222121111 2223333321 11 1110000 00010000000
Q ss_pred EEEeCCCcEEEEeCCCCCcceEEeccCC------CCceeeeeEEEEcC-CCC---EEEEEcCCCcEEEEcCCccccceec
Q 009380 430 ATTSFDDTIGIWSGVNFENTSMIHHNNQ------TGRWISSFRAIWGW-DDS---CVFIGNMTRTVEVISPAQRRSVATL 499 (536)
Q Consensus 430 ~t~s~dg~I~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~-~g~---~l~~gs~dg~I~v~d~~~~~~~~~l 499 (536)
...-..+.|.-.|..+++....+..... ....... +.... +|+ .++.++.+|.+.++|..+|+.+...
T Consensus 408 ~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L--~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 408 ADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSL--VDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CcccccceEEEEeCCCCceEEEecccCCccccccccCCceE--EeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 0112245577777777776665542110 0000111 11222 553 7999999999999999999887664
Q ss_pred c
Q 009380 500 Q 500 (536)
Q Consensus 500 ~ 500 (536)
+
T Consensus 486 ~ 486 (764)
T TIGR03074 486 E 486 (764)
T ss_pred e
Confidence 3
No 398
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.33 E-value=1.1 Score=44.81 Aligned_cols=185 Identities=9% Similarity=0.004 Sum_probs=88.7
Q ss_pred cccccceEEecccccCccc--cccccC----------CceEEEEEEecCCccEEEEE--eCC----CcEEEEECCCCCCC
Q 009380 210 KIEVGSCVDIGSLTLKPEN--IARIMP----------GRITQMKFLPCSDVRMVVAG--SKL----GNITFWNLDSQQDE 271 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~~~~~--~~~~~~----------~~I~~v~~~p~~~~~~l~tg--~~d----g~v~iwd~~~~~~~ 271 (536)
-+-.++.|.+.|...+|.. +.+... ..-..+-.-| +|.+++++ +.+ |.+.+.|-++
T Consensus 93 PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp--~G~imIS~lGd~~G~g~Ggf~llD~~t---- 166 (461)
T PF05694_consen 93 PGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP--DGRIMISALGDADGNGPGGFVLLDGET---- 166 (461)
T ss_dssp EBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S--S--EEEEEEEETTS-S--EEEEE-TTT----
T ss_pred eeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC--CccEEEEeccCCCCCCCCcEEEEcCcc----
Confidence 3446678999998655432 222221 1223344446 88888875 222 4577777665
Q ss_pred CCceEEeccCC---CCEEEEEEecCCCCEEEEEE--------------------CCCeEEEEECCCCeEEEeecCC---C
Q 009380 272 DNGIYLFRTHL---GPISGIVTQQYCLSKIFTSC--------------------YDGLIRLMDAEKEVFDLVYSSE---Y 325 (536)
Q Consensus 272 ~~~~~~~~~h~---~~V~~l~~~~~~~~~l~s~s--------------------~dg~I~vwd~~~~~~~~~~~~~---~ 325 (536)
........... .--..+-|.|.. +.++|.. +..++.+||+.+.+..+.+... .
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp --EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 44444443322 234567778876 7787765 3478999999999888776543 3
Q ss_pred ceeEEEecCC--CCCEEEEEECCCeEEEEEC-CCCcc----ceeEe-----------------ccCCCeEEEEEecCCCC
Q 009380 326 AVFSLSQQPN--NVNTLYFGEGQGGLNIWDV-RSRKS----ATEWL-----------------LHEARINTIDFNPRNPN 381 (536)
Q Consensus 326 ~i~~l~~~~~--~~~~l~~g~~dg~i~i~d~-~~~~~----~~~~~-----------------~h~~~i~~i~~~p~~~~ 381 (536)
....+.|..+ ...-++.+...++|..|-- ..++- +..+. .-..-|+.|.++.|+..
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 4667777544 3223444445556666643 33321 11111 01345899999998865
Q ss_pred EEEEEeCCCcEEEEeCCCCC
Q 009380 382 IMATSSTDGTACIWDLRSMA 401 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~~~ 401 (536)
+.+++-.+|.|+.||+....
T Consensus 326 LYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTT
T ss_pred EEEEcccCCcEEEEecCCCC
Confidence 55666679999999998753
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.32 E-value=0.46 Score=48.66 Aligned_cols=143 Identities=8% Similarity=0.044 Sum_probs=84.1
Q ss_pred cCCCCEEEEEEecCC---CCEEEEEECCCeEEEEECCC-----CeEEEee--cC--CCc--eeEEEecCCCCCEEEEEEC
Q 009380 280 THLGPISGIVTQQYC---LSKIFTSCYDGLIRLMDAEK-----EVFDLVY--SS--EYA--VFSLSQQPNNVNTLYFGEG 345 (536)
Q Consensus 280 ~h~~~V~~l~~~~~~---~~~l~s~s~dg~I~vwd~~~-----~~~~~~~--~~--~~~--i~~l~~~~~~~~~l~~g~~ 345 (536)
+.-..|..+.|.|-+ ...|++......|.||-+.- .+..... .. .-+ ...+.|+|.. .+|++-+.
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEec
Confidence 334568999999863 13577777889999999862 2221111 11 112 2467899988 57766666
Q ss_pred CCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEc
Q 009380 346 QGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFS 423 (536)
Q Consensus 346 dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~s 423 (536)
...-.+++++.....-... ...+.|.|.||.+||.+++++.+..=.-+|||-............++.-.+.|.++.-.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT 211 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEAT 211 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEe
Confidence 5454566666443322222 45688999999999977666666555567888543221111222333444555555443
No 400
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.24 E-value=1.2 Score=42.85 Aligned_cols=276 Identities=11% Similarity=0.047 Sum_probs=121.4
Q ss_pred cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC---CCCEEEEEEecCCCCEEEEEECCCeEEE
Q 009380 233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH---LGPISGIVTQQYCLSKIFTSCYDGLIRL 309 (536)
Q Consensus 233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h---~~~V~~l~~~~~~~~~l~s~s~dg~I~v 309 (536)
....+.+|.|.. +..-+++|.. |. |+...++........ .... .-...+|.|..+ ..++ ++..+. .+
T Consensus 15 t~~~l~dV~F~d--~~~G~~VG~~-g~--il~T~DGG~tW~~~~-~~~~~~~~~~l~~I~f~~~--~g~i-vG~~g~-ll 84 (302)
T PF14870_consen 15 TDKPLLDVAFVD--PNHGWAVGAY-GT--ILKTTDGGKTWQPVS-LDLDNPFDYHLNSISFDGN--EGWI-VGEPGL-LL 84 (302)
T ss_dssp -SS-EEEEEESS--SS-EEEEETT-TE--EEEESSTTSS-EE------S-----EEEEEEEETT--EEEE-EEETTE-EE
T ss_pred CCCceEEEEEec--CCEEEEEecC-CE--EEEECCCCccccccc-cCCCccceeeEEEEEecCC--ceEE-EcCCce-EE
Confidence 345789999985 5566666654 53 344444322111111 1111 123567777543 3444 455553 34
Q ss_pred EECCCCe-EEEee---cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEEE
Q 009380 310 MDAEKEV-FDLVY---SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMA 384 (536)
Q Consensus 310 wd~~~~~-~~~~~---~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l~ 384 (536)
...+.+. ...+. ........+....++ .+...+..|.|+.=. ..++. ..........+..+.-.+++ .+++
T Consensus 85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~--~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG-~~va 160 (302)
T PF14870_consen 85 HTTDGGKTWERVPLSSKLPGSPFGITALGDG--SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDG-RYVA 160 (302)
T ss_dssp EESSTTSS-EE----TT-SS-EEEEEEEETT--EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS--EEE
T ss_pred EecCCCCCcEEeecCCCCCCCeeEEEEcCCC--cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCC-cEEE
Confidence 4444442 22221 122333444444333 444455555544322 22332 22223445778888888987 6777
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe--ccCCCCcee
Q 009380 385 TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH--HNNQTGRWI 462 (536)
Q Consensus 385 s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~ 462 (536)
+++.-....-||--.. .-..........|.++.|+|++.+.+++ ..|.|+.=+... ...... .........
T Consensus 161 vs~~G~~~~s~~~G~~----~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~~~w~~~~~~~~~~~~ 233 (302)
T PF14870_consen 161 VSSRGNFYSSWDPGQT----TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD--DGETWSEPIIPIKTNGY 233 (302)
T ss_dssp EETTSSEEEEE-TT-S----S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--EEEEE---B-TTSS--S
T ss_pred EECcccEEEEecCCCc----cceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC--CccccccccCCcccCce
Confidence 7765444557775431 1222223456899999999998865544 788888876211 111111 111112233
Q ss_pred eeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccC-CceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380 463 SSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS-PYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533 (536)
Q Consensus 463 ~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~-~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW 533 (536)
..+.++|.+++...++|+. |.+ +...+.|+.-..-.. .........+.|.+. +.-...+.+|.|.-|
T Consensus 234 ~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~--~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 234 GILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP--DKGFVLGQDGVLLRY 301 (302)
T ss_dssp -EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET--TEEEEE-STTEEEEE
T ss_pred eeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCC--CceEEECCCcEEEEe
Confidence 4566889988877777654 433 445555544333321 111112234455432 455556677888766
No 401
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.029 Score=60.64 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=73.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCc
Q 009380 381 NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGR 460 (536)
Q Consensus 381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 460 (536)
-+++.|+..|.+-..|++..- .....-..-.++|++++|+.+|..++.|-.+|.|.+||+...+..+.+......+.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL---~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNL---GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeEEEEcCchhhhhhhhhccc---chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 478888888999999988631 11223334578999999999999999999999999999999888888865444333
Q ss_pred eeeeeEEEEcCCCCEEEEEcCCCc
Q 009380 461 WISSFRAIWGWDDSCVFIGNMTRT 484 (536)
Q Consensus 461 ~~~~~~~~~s~~g~~l~~gs~dg~ 484 (536)
. .+.+.|..++..++++...|.
T Consensus 177 ~--vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 177 G--VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred e--EEEEEEeCCCcEEEEccCCCc
Confidence 2 233556666667888777675
No 402
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.08 E-value=0.45 Score=42.89 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=89.0
Q ss_pred CCceEEEEEEecCCccEEEEEeC---------CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSK---------LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD 304 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~---------dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d 304 (536)
..+.+.-..+| +|++++---. .|.++.|-... .+..+...-+--+.++|+.+...+.++-+.+
T Consensus 108 knR~NDgkvdP--~Gryy~GtMad~~~~le~~~g~Ly~~~~~h------~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln 179 (310)
T KOG4499|consen 108 KNRLNDGKVDP--DGRYYGGTMADFGDDLEPIGGELYSWLAGH------QVELIWNCVGISNGLAWDSDAKKFYYIDSLN 179 (310)
T ss_pred hcccccCccCC--CCceeeeeeccccccccccccEEEEeccCC------CceeeehhccCCccccccccCcEEEEEccCc
Confidence 45677778889 8988432222 23455554432 1222222223345788988774455666778
Q ss_pred CeEEEEE--CCCCeEE---Eee---c---CC-CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEE
Q 009380 305 GLIRLMD--AEKEVFD---LVY---S---SE-YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINT 372 (536)
Q Consensus 305 g~I~vwd--~~~~~~~---~~~---~---~~-~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~ 372 (536)
-+|.-|| ..+|... .++ . .+ ...-.++....| ++.++.-..|+|..+|..+|+.+.++......|+|
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits 258 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS 258 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence 8887787 5555321 111 1 11 122334555555 67777777889999999999999999988999999
Q ss_pred EEEecCCCCEEEEE
Q 009380 373 IDFNPRNPNIMATS 386 (536)
Q Consensus 373 i~~~p~~~~~l~s~ 386 (536)
+||---+-.+|++.
T Consensus 259 ccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 259 CCFGGKNLDILYVT 272 (310)
T ss_pred EEecCCCccEEEEE
Confidence 99974332344433
No 403
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.03 E-value=0.018 Score=38.13 Aligned_cols=34 Identities=21% Similarity=0.619 Sum_probs=30.1
Q ss_pred cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECC
Q 009380 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLD 266 (536)
Q Consensus 231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~ 266 (536)
+.....|.+++|+| ..++||.|+.+|.|.||.+.
T Consensus 8 k~l~~~v~~~~w~P--~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 8 KNLPSRVSCMSWCP--TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cCCCCcEEEEEECC--CCCEEEEEECCCeEEEEECC
Confidence 34466799999999 89999999999999999994
No 404
>PHA03098 kelch-like protein; Provisional
Probab=95.95 E-value=0.36 Score=51.19 Aligned_cols=185 Identities=5% Similarity=-0.029 Sum_probs=86.6
Q ss_pred CccEEEEEeCCC------cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-----CeEEEEECCCC
Q 009380 247 DVRMVVAGSKLG------NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-----GLIRLMDAEKE 315 (536)
Q Consensus 247 ~~~~l~tg~~dg------~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-----g~I~vwd~~~~ 315 (536)
++.+++.|+.++ .+..||..+.. ...+..+.........+.+ ++ ..++.|+.+ ..+..||..+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~R~~~~~~~~--~~-~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKS--WNKVPELIYPRKNPGVTVF--NN-RIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCe--eeECCCCCcccccceEEEE--CC-EEEEEeCCCCCEecceEEEEcCCCC
Confidence 567777777543 46677776532 1111111111111222222 34 677777765 35778888877
Q ss_pred eEEEeecCCCc--eeEEEecCCCCCEEEEEECC------CeEEEEECCCCccce--eEeccCCCeEEEEEecCCCCEEEE
Q 009380 316 VFDLVYSSEYA--VFSLSQQPNNVNTLYFGEGQ------GGLNIWDVRSRKSAT--EWLLHEARINTIDFNPRNPNIMAT 385 (536)
Q Consensus 316 ~~~~~~~~~~~--i~~l~~~~~~~~~l~~g~~d------g~i~i~d~~~~~~~~--~~~~h~~~i~~i~~~p~~~~~l~s 385 (536)
..........+ -.+++.. ++ .+.+.|+.+ ..+..||+.+.+-.. .+..... -.++... ++ .+++.
T Consensus 369 ~W~~~~~lp~~r~~~~~~~~-~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~~~-~~-~iyv~ 443 (534)
T PHA03098 369 KWREEPPLIFPRYNPCVVNV-NN-LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-GGCAIYH-DG-KIYVI 443 (534)
T ss_pred ceeeCCCcCcCCccceEEEE-CC-EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-CceEEEE-CC-EEEEE
Confidence 66543321111 1122222 33 566666632 358889987654321 1111111 1122333 23 56777
Q ss_pred EeCCC--------cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-----CcEEEEeCCC
Q 009380 386 SSTDG--------TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-----DTIGIWSGVN 445 (536)
Q Consensus 386 ~s~dg--------~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-----g~I~iwd~~~ 445 (536)
|+.++ .+.+||..+.+-....... ........+.+ ++..++.|+.+ +.|.+||..+
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLN--FPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCC--cccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 76432 3888998875311111111 11111112222 56666676654 3466666543
No 405
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=0.099 Score=57.05 Aligned_cols=147 Identities=10% Similarity=0.027 Sum_probs=92.4
Q ss_pred CCEEEEEEecCCCCEE--EEEECCCeEEEEECCCCe------EE------EeecCCCceeEEEecCCCCCEEEEEECCCe
Q 009380 283 GPISGIVTQQYCLSKI--FTSCYDGLIRLMDAEKEV------FD------LVYSSEYAVFSLSQQPNNVNTLYFGEGQGG 348 (536)
Q Consensus 283 ~~V~~l~~~~~~~~~l--~s~s~dg~I~vwd~~~~~------~~------~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~ 348 (536)
-+|..+...+|+ ... +..+.+-.|..||+++-. .. ..+.......++.|+|.-+...++...|+.
T Consensus 101 ~pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 346666666775 433 333445578899987521 11 111223456788899987777888889999
Q ss_pred EEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCe
Q 009380 349 LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSS 428 (536)
Q Consensus 349 i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~ 428 (536)
|.+..+........-.......++++|+|.| ..++.|-..|++.-|-..-.- +......-......|.+|+|-....+
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~lei-k~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEI-KSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEecccc-ceeeEecCCCeEEEeecccce-eecccCCCcCCCcceeEEEEecceeE
Confidence 9998776433322222356778999999988 688899999999988754310 00011111112578999999876665
Q ss_pred EEEE
Q 009380 429 LATT 432 (536)
Q Consensus 429 l~t~ 432 (536)
+++-
T Consensus 258 lvvy 261 (1405)
T KOG3630|consen 258 LVVY 261 (1405)
T ss_pred EEEe
Confidence 5553
No 406
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=1.7 Score=40.82 Aligned_cols=196 Identities=13% Similarity=0.137 Sum_probs=119.4
Q ss_pred cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE---EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC
Q 009380 280 THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF---DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS 356 (536)
Q Consensus 280 ~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~---~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~ 356 (536)
.-.+-+..+.++. ++.+.+..+.-++|.|+.+... .-.+..++--.++..+ | ++++++..+.-+.++|+.+
T Consensus 84 ~~~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivdvsd 157 (370)
T COG5276 84 NARDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred ehhhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--C-CEEEEeeccCcEEEEECCC
Confidence 3345567777775 6788888888899999987532 2233333444444443 4 7999999787888999987
Q ss_pred Ccc---ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe
Q 009380 357 RKS---ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS 433 (536)
Q Consensus 357 ~~~---~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s 433 (536)
... ...+.........++.+ | ++...+..|+-+.|-|+.... .+..+........+.++..+++.-+++..
T Consensus 158 pssP~lagrya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~--sPvli~~~n~g~g~~sv~vsdnr~y~vvy- 231 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPH--SPVLIGSYNTGPGTYSVSVSDNRAYLVVY- 231 (370)
T ss_pred CCCceeeeeeccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCC--CCeEEEEEecCCceEEEEecCCeeEEEEc-
Confidence 543 33344444445667776 4 577777789999999998853 22333333444578888888776555543
Q ss_pred CCCcEEEEeCCCCCcceEEeccC-CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380 434 FDDTIGIWSGVNFENTSMIHHNN-QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 434 ~dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~ 492 (536)
+--+.+-|..+.+....+..-. .....++. +.-.+++..+...+..+-+.|+.+
T Consensus 232 -~egvlivd~s~~ssp~~~gsyet~~p~~~s~----v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 232 -DEGVLIVDVSGPSSPTVFGSYETSNPVSIST----VPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred -ccceEEEecCCCCCceEeeccccCCcccccc----eecccceeeeeccccCceeEeccC
Confidence 3447788887776666554221 11111211 122345555555555555555543
No 407
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.80 E-value=0.034 Score=36.76 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=30.3
Q ss_pred ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc
Q 009380 413 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN 448 (536)
Q Consensus 413 ~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~ 448 (536)
....|..++|+|...+||.++.+|.|.+|.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 4457999999999999999999999999998 5443
No 408
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.79 E-value=2.1 Score=43.00 Aligned_cols=195 Identities=10% Similarity=0.072 Sum_probs=106.0
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEeecCC---CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC-CCeE
Q 009380 296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSE---YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE-ARIN 371 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~---~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-~~i~ 371 (536)
..++.+..+|.|.-.|.+++......... ..+.+-.+..+| .+++++.+|.++.+|.++|+.+....... -.+.
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G--~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG--KIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC--eEEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 46777788888888888888754332222 122222222254 58999999999999998898877776544 1111
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc----ceeecccCceeEEEEccCCCeEEEEeC--CCcEEEEeCCC
Q 009380 372 TIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP----MKVLSHKRAVHSAYFSPSGSSLATTSF--DDTIGIWSGVN 445 (536)
Q Consensus 372 ~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~----~~~~~~~~~v~~l~~sp~g~~l~t~s~--dg~I~iwd~~~ 445 (536)
.-..-.++ .+..++.++.+...|..++...-... ........++ ..++ .++.+.. ++.+.-+|..+
T Consensus 147 ~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-----~~~~-~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 147 SPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-----IASG-TVYVGSDGYDGILYALNAED 218 (370)
T ss_pred cCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-----eecc-eEEEecCCCcceEEEEEccC
Confidence 21222222 44444467777777777654110000 1111111111 1133 3444444 55677777777
Q ss_pred CCcceEEeccCCCCceee----e--eEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC
Q 009380 446 FENTSMIHHNNQTGRWIS----S--FRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP 502 (536)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~----~--~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~ 502 (536)
+............+.... . ...... +..++.++.++.+..++..+++.+..+...
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v--~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYV--DGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEE--CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 776655432222221100 0 000111 223466777788888999999888887653
No 409
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.70 E-value=2.6 Score=42.21 Aligned_cols=144 Identities=13% Similarity=0.150 Sum_probs=78.9
Q ss_pred ceEEEEEEecCCccEEEEEe-----------CCC-cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC
Q 009380 236 RITQMKFLPCSDVRMVVAGS-----------KLG-NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY 303 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~-----------~dg-~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~ 303 (536)
....|+|.+ +|+++++-. ..+ .|.+++-.+..........+.........+++.+++ |+.++.
T Consensus 15 ~P~~ia~d~--~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G---lyV~~~ 89 (367)
T TIGR02604 15 NPIAVCFDE--RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG---VYVATP 89 (367)
T ss_pred CCceeeECC--CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC---EEEeCC
Confidence 466789988 888777753 223 677776543322123334444444456889998875 444554
Q ss_pred CCeEEEEECCCC-----eEEEe---ecC-----CCceeEEEecCCCCCEEEEEEC-------------------CCeEEE
Q 009380 304 DGLIRLMDAEKE-----VFDLV---YSS-----EYAVFSLSQQPNNVNTLYFGEG-------------------QGGLNI 351 (536)
Q Consensus 304 dg~I~vwd~~~~-----~~~~~---~~~-----~~~i~~l~~~~~~~~~l~~g~~-------------------dg~i~i 351 (536)
....++.|.... +...+ +.. ......++|.|++ .+.++-+. .|.|..
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 543344455321 22212 111 3447789999998 44443331 145666
Q ss_pred EECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380 352 WDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 352 ~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s 387 (536)
+|..+++. ..+...-.....++|+|++ .++++-.
T Consensus 169 ~~pdg~~~-e~~a~G~rnp~Gl~~d~~G-~l~~tdn 202 (367)
T TIGR02604 169 YNPDGGKL-RVVAHGFQNPYGHSVDSWG-DVFFCDN 202 (367)
T ss_pred EecCCCeE-EEEecCcCCCccceECCCC-CEEEEcc
Confidence 66654432 2332222345689999977 5665544
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=0.14 Score=55.88 Aligned_cols=146 Identities=11% Similarity=0.067 Sum_probs=88.6
Q ss_pred CceeEEEecCCCCCEEEE-EE-CCCeEEEEECCCCccce-----eEe------ccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380 325 YAVFSLSQQPNNVNTLYF-GE-GQGGLNIWDVRSRKSAT-----EWL------LHEARINTIDFNPRNPNIMATSSTDGT 391 (536)
Q Consensus 325 ~~i~~l~~~~~~~~~l~~-g~-~dg~i~i~d~~~~~~~~-----~~~------~h~~~i~~i~~~p~~~~~l~s~s~dg~ 391 (536)
-+|..+...++. ...++ -+ .+-.|..||+++-.... -+. .......++.|+|.-+...+.+..|+.
T Consensus 101 ~pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 455566666664 33322 22 33478899998643211 111 122345678999876667788888999
Q ss_pred EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcC
Q 009380 392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGW 471 (536)
Q Consensus 392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 471 (536)
|.+..+.... ...........+++++|+|.|+.++.|-..|++.-|... ++....+.. .+......+++++|-.
T Consensus 180 l~V~~~~~~~----~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~-Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLA----QNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPE-PPVEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhh----hhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccC-CCcCCCcceeEEEEec
Confidence 9988776532 233334567788999999999999999999999988753 222222221 1111134445566654
Q ss_pred CCCEEE
Q 009380 472 DDSCVF 477 (536)
Q Consensus 472 ~g~~l~ 477 (536)
...+++
T Consensus 254 t~eflv 259 (1405)
T KOG3630|consen 254 TQEFLV 259 (1405)
T ss_pred ceeEEE
Confidence 444443
No 411
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.66 E-value=2.2 Score=41.09 Aligned_cols=236 Identities=12% Similarity=0.104 Sum_probs=101.6
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE 315 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~ 315 (536)
..++|.|.. + ..+++|. .| +.+...+. ......+..-..-.+....+....++ ....++..|.|.. ..+.+
T Consensus 63 ~l~~I~f~~--~-~g~ivG~-~g-~ll~T~Dg-G~tW~~v~l~~~lpgs~~~i~~l~~~--~~~l~~~~G~iy~-T~DgG 133 (302)
T PF14870_consen 63 HLNSISFDG--N-EGWIVGE-PG-LLLHTTDG-GKTWERVPLSSKLPGSPFGITALGDG--SAELAGDRGAIYR-TTDGG 133 (302)
T ss_dssp EEEEEEEET--T-EEEEEEE-TT-EEEEESST-TSS-EE----TT-SS-EEEEEEEETT--EEEEEETT--EEE-ESSTT
T ss_pred eEEEEEecC--C-ceEEEcC-Cc-eEEEecCC-CCCcEEeecCCCCCCCeeEEEEcCCC--cEEEEcCCCcEEE-eCCCC
Confidence 367777764 3 4455554 44 33333332 21122221111112233444444443 4444455555433 22222
Q ss_pred -eEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 009380 316 -VFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTAC 393 (536)
Q Consensus 316 -~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~ 393 (536)
.... .......+..+..++++ .+++++.....+.-||.-...-...-......|..|.|.|++ .+.+.+ ..|.|+
T Consensus 134 ~tW~~~~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~-~lw~~~-~Gg~~~ 210 (302)
T PF14870_consen 134 KTWQAVVSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDG-NLWMLA-RGGQIQ 210 (302)
T ss_dssp SSEEEEE-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEEEE-TTTEEE
T ss_pred CCeeEcccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCC-CEEEEe-CCcEEE
Confidence 3332 23445778888889988 677776555555677754322222223356889999999986 444433 788888
Q ss_pred EEeCCC-CCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCC
Q 009380 394 IWDLRS-MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD 472 (536)
Q Consensus 394 iwdl~~-~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 472 (536)
+=+... ...-.............+..++|.+++...++|+ .|.+ +.....++.-........... ..+++.|..+
T Consensus 211 ~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~--n~~~i~f~~~ 286 (302)
T PF14870_consen 211 FSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPS--NLYRIVFVNP 286 (302)
T ss_dssp EEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS-----EEEEEET
T ss_pred EccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCC--ceEEEEEcCC
Confidence 877221 1100001111112334588999999877666555 4533 344445554444332222221 2233556555
Q ss_pred CCEEEEEcCCCcEEEE
Q 009380 473 DSCVFIGNMTRTVEVI 488 (536)
Q Consensus 473 g~~l~~gs~dg~I~v~ 488 (536)
.+-++.| .+|.|.-|
T Consensus 287 ~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 287 DKGFVLG-QDGVLLRY 301 (302)
T ss_dssp TEEEEE--STTEEEEE
T ss_pred CceEEEC-CCcEEEEe
Confidence 5555555 46766444
No 412
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=0.7 Score=48.67 Aligned_cols=182 Identities=12% Similarity=0.007 Sum_probs=98.5
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-e---cCCCceeEEEec
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-Y---SSEYAVFSLSQQ 333 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~---~~~~~i~~l~~~ 333 (536)
-.|+||+.. +..+....-..+.+-.+.|+.+ ..|+....+|++++|++-....... . .....|..+.+.
T Consensus 64 ~~I~If~~s-----G~lL~~~~w~~~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f 136 (829)
T KOG2280|consen 64 PYIRIFNIS-----GQLLGRILWKHGELIGMGWSDD--EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFF 136 (829)
T ss_pred eeEEEEecc-----ccchHHHHhcCCCeeeecccCC--ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEe
Confidence 458888887 4444433333347788999987 5788889999999999876543321 1 123446666666
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCccceeEec---cCCCeEEEEEecCC--CCEEEEEe-CCCcEEEEeCCCCCCCCCCc
Q 009380 334 PNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL---HEARINTIDFNPRN--PNIMATSS-TDGTACIWDLRSMATDKPEP 407 (536)
Q Consensus 334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---h~~~i~~i~~~p~~--~~~l~s~s-~dg~i~iwdl~~~~~~~~~~ 407 (536)
.+| +++-..+|.+.+.+-.....+.++.. ..-.-.|-...+.+ ..+++-.. ..+ ..++-.... ....
T Consensus 137 ~~G---Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~---~~q~ 209 (829)
T KOG2280|consen 137 HNG---VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEES---RVQL 209 (829)
T ss_pred cCc---eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecc---cccc
Confidence 555 44445556665543222111222221 11111222222221 11111111 000 011111111 1222
Q ss_pred ceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380 408 MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH 453 (536)
Q Consensus 408 ~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~ 453 (536)
..+......+..+..||+.++|+.-..+|.|.+-+....+....+.
T Consensus 210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 2332334678889999999999999999999999887666655553
No 413
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.50 E-value=3.2 Score=41.87 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=41.9
Q ss_pred CceEEEEEEec---------CCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec
Q 009380 235 GRITQMKFLPC---------SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ 292 (536)
Q Consensus 235 ~~I~~v~~~p~---------~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 292 (536)
+.|+++.|-|. .|...|++|..+|.|++|... +..+..-.-|..+|..|.+..
T Consensus 57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte~-----G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTEN-----GVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEecc-----chHHHHHhcCccceEEEEecc
Confidence 57888888874 356789999999999999975 566666667888888887754
No 414
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.39 E-value=3.8 Score=42.31 Aligned_cols=151 Identities=8% Similarity=0.003 Sum_probs=90.0
Q ss_pred cccccceeeeecCCCCcccc-cccccccccccccccceEEecccccCcccccccc-----------CCceEEEEEEecCC
Q 009380 180 KDEFNGFKTCKDEGLGVGSC-DLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIM-----------PGRITQMKFLPCSD 247 (536)
Q Consensus 180 ~~~~~~v~~~~~s~~~~~l~-~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~-----------~~~I~~v~~~p~~~ 247 (536)
-|....|..+.|.|-+..-. .+ +.-.....|.+|.+........+.. +---..+.||| .
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paL-------LAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP--k 123 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPAL-------LAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP--K 123 (671)
T ss_pred eeccceeeeeeecCcccCCCCce-------EEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC--C
Confidence 45556777888877653222 11 1224556889998753322211211 11224578999 8
Q ss_pred ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC-----eEEEeec
Q 009380 248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE-----VFDLVYS 322 (536)
Q Consensus 248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~-----~~~~~~~ 322 (536)
...|++-.....-.++++... ...+..-....+-|.|.+|.+||..++++.+..=.-++||-... .+..++.
T Consensus 124 ~~iL~VLT~~dvSV~~sV~~d---~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFd 200 (671)
T PF15390_consen 124 KAILTVLTARDVSVLPSVHCD---SSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFD 200 (671)
T ss_pred CceEEEEecCceeEeeeeeeC---CceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeec
Confidence 888887776655566676643 33333333456789999999999555555565556788985543 2344556
Q ss_pred CCCceeEEEecCCCCCEEEEEE
Q 009380 323 SEYAVFSLSQQPNNVNTLYFGE 344 (536)
Q Consensus 323 ~~~~i~~l~~~~~~~~~l~~g~ 344 (536)
.++.|.+|.-.-+ ..+++++
T Consensus 201 v~~~Icsi~AT~d--sqVAvaT 220 (671)
T PF15390_consen 201 VGGYICSIEATVD--SQVAVAT 220 (671)
T ss_pred CCCceEEEEEecc--ceEEEEe
Confidence 6667776665544 3555555
No 415
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=2.3 Score=44.99 Aligned_cols=184 Identities=9% Similarity=0.023 Sum_probs=89.9
Q ss_pred CCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee--E--eccCCCeEEEEEecCC
Q 009380 304 DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE--W--LLHEARINTIDFNPRN 379 (536)
Q Consensus 304 dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~--~--~~h~~~i~~i~~~p~~ 379 (536)
--.|+|+++.......+.-....+..+.|+.+. .|++...+|++++|++-. ..+.. . ......|..+.+...|
T Consensus 63 ~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 63 RPYIRIFNISGQLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred ceeEEEEeccccchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc
Confidence 345888887765544444334488899999874 788889999999999853 22222 1 2223344444444434
Q ss_pred CCEEEEEeCCCcE-EEEeCCCCCCCCCCcceeecccCceeEEEEccCCC---eEEEEe-CCCcEEEEeCCCCCcceEEec
Q 009380 380 PNIMATSSTDGTA-CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS---SLATTS-FDDTIGIWSGVNFENTSMIHH 454 (536)
Q Consensus 380 ~~~l~s~s~dg~i-~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~---~l~t~s-~dg~I~iwd~~~~~~~~~~~~ 454 (536)
-.+.+. +|.+ .+-+............. .....-+|-...+++. .++-.. ..+ ..++-.... .......
T Consensus 140 -Vavlt~--~g~v~~i~~~~~~~~~~~~diP--~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~-~~q~~~~ 212 (829)
T KOG2280|consen 140 -VAVLTV--SGQVILINGVEEPKLRKMPDIP--YNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEES-RVQLHAL 212 (829)
T ss_pred -eEEEec--CCcEEEEcCCCcchhhhCCCCC--CccCCCcceeEecCCCcceeEEeechhhh-hcccceecc-ccccccc
Confidence 333333 3444 34343332100000001 1111112222222211 111111 000 011111110 1111111
Q ss_pred cCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380 455 NNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 455 ~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~ 500 (536)
..... ...++..||+.++|+--++.|.|.+-+.+..+.+..+.
T Consensus 213 ~~~~~---~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 213 SWPNS---SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCCCc---eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 11112 22346679999999999999999999888877776665
No 416
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.37 E-value=0.012 Score=62.06 Aligned_cols=122 Identities=14% Similarity=0.112 Sum_probs=76.0
Q ss_pred ccccceEEecccccC--ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCC---CceEEeccCCCCE
Q 009380 211 IEVGSCVDIGSLTLK--PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDED---NGIYLFRTHLGPI 285 (536)
Q Consensus 211 ~~~dg~v~lw~~~~~--~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~---~~~~~~~~h~~~V 285 (536)
.++.+.+++-+.... ...+.+++++.|-.+.|... +...+. ..-|.+.||+++.-+.+- -.++....-...+
T Consensus 107 ~~~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~-~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~ 183 (1283)
T KOG1916|consen 107 NGMENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHT-KCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDP 183 (1283)
T ss_pred hchhhhhhhccCcchhHHHHHHhcCCCCccccccccc-CChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCc
Confidence 345556666554222 23567899999999999764 333333 334788999987532111 1222233334445
Q ss_pred EEEEEec---CCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCC
Q 009380 286 SGIVTQQ---YCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNN 336 (536)
Q Consensus 286 ~~l~~~~---~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~ 336 (536)
.-|.|.| .. .++..+-.+++|++..+++.....+..|...+..++|...|
T Consensus 184 ~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g 236 (1283)
T KOG1916|consen 184 QLVSWCPIAVNK-VYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEG 236 (1283)
T ss_pred ceeeeccccccc-ceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhc
Confidence 5556655 33 56777778899999988876555555688888888776665
No 417
>PHA03098 kelch-like protein; Provisional
Probab=95.31 E-value=0.65 Score=49.24 Aligned_cols=184 Identities=13% Similarity=0.092 Sum_probs=87.3
Q ss_pred CEEEEEECCC------eEEEEECCCCeEEEeecCC--CceeEEEecCCCCCEEEEEECC-----CeEEEEECCCCccce-
Q 009380 296 SKIFTSCYDG------LIRLMDAEKEVFDLVYSSE--YAVFSLSQQPNNVNTLYFGEGQ-----GGLNIWDVRSRKSAT- 361 (536)
Q Consensus 296 ~~l~s~s~dg------~I~vwd~~~~~~~~~~~~~--~~i~~l~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~~~~- 361 (536)
..++.|+.++ .+..||..+.......... ..-.+++.. ++ .+++.|+.+ ..+..||..+++-..
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-NN-RIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-CC-EEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 5666666542 5778888887765443211 111122222 33 577777765 357788887654321
Q ss_pred -eEeccCCCeEEEEEecCCCCEEEEEeCC------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC
Q 009380 362 -EWLLHEARINTIDFNPRNPNIMATSSTD------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF 434 (536)
Q Consensus 362 -~~~~h~~~i~~i~~~p~~~~~l~s~s~d------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~ 434 (536)
.+. +...-.+++.. ++.+++.|+.+ ..+..||+.+.+-...... ...... .++. ..++..++.|+.
T Consensus 374 ~~lp-~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--p~~r~~-~~~~-~~~~~iyv~GG~ 446 (534)
T PHA03098 374 PPLI-FPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL--PISHYG-GCAI-YHDGKIYVIGGI 446 (534)
T ss_pred CCcC-cCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC--CccccC-ceEE-EECCEEEEECCc
Confidence 111 11111122222 33677777732 3578899876431111111 101111 1222 225666666664
Q ss_pred CC--------cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-----CcEEEEcCCcc
Q 009380 435 DD--------TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-----RTVEVISPAQR 493 (536)
Q Consensus 435 dg--------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v~d~~~~ 493 (536)
++ .+.+||..+.+-...-.. ...+..... +. .++..++.|+.+ +.|.+||..+.
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~--~~~r~~~~~-~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNKWTELSSL--NFPRINASL-CI--FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred cCCCCCcccceEEEecCCCCceeeCCCC--CcccccceE-EE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 32 388888775432211111 111111111 11 256677777654 46778877665
No 418
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.30 E-value=1.5 Score=43.27 Aligned_cols=241 Identities=13% Similarity=0.091 Sum_probs=111.2
Q ss_pred eeeecCCCCcccccccccccccccccccceE--EecccccCccccccccCCceEEEEEEec--CCccEEEEEeCC-----
Q 009380 187 KTCKDEGLGVGSCDLIKGVVKTEKIEVGSCV--DIGSLTLKPENIARIMPGRITQMKFLPC--SDVRMVVAGSKL----- 257 (536)
Q Consensus 187 ~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v--~lw~~~~~~~~~~~~~~~~I~~v~~~p~--~~~~~l~tg~~d----- 257 (536)
..+.|.|||++++....+.+.++. .+|.. .+-++ ..+..........++++|. .++.+.++.+..
T Consensus 5 ~~~a~~pdG~l~v~e~~G~i~~~~--~~g~~~~~v~~~----~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 5 RSMAFLPDGRLLVAERSGRIWVVD--KDGSLKTPVADL----PEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp EEEEEETTSCEEEEETTTEEEEEE--TTTEECEEEEE-----TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred eEEEEeCCCcEEEEeCCceEEEEe--CCCcCcceeccc----ccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 567888999888865333443332 22222 11111 1222334567899999992 224444444421
Q ss_pred ---CcEEEEECCCCCCC---CC-ceEEecc---CCCCEEEEEEecCCCCEEEEEECCC-------------eEEEEECCC
Q 009380 258 ---GNITFWNLDSQQDE---DN-GIYLFRT---HLGPISGIVTQQYCLSKIFTSCYDG-------------LIRLMDAEK 314 (536)
Q Consensus 258 ---g~v~iwd~~~~~~~---~~-~~~~~~~---h~~~V~~l~~~~~~~~~l~s~s~dg-------------~I~vwd~~~ 314 (536)
..|.-|.+...... .. .+..+.. ....-..|.|.|++ .++++.+..+ .|.-.+...
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG 157 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG 157 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccC
Confidence 23444444432000 01 1112222 23345679999998 6666655432 233333322
Q ss_pred Ce------------EEEee-cCCCceeEEEecCCCCCEEEEEE--CCC--eEEEEECCCCc-------------------
Q 009380 315 EV------------FDLVY-SSEYAVFSLSQQPNNVNTLYFGE--GQG--GLNIWDVRSRK------------------- 358 (536)
Q Consensus 315 ~~------------~~~~~-~~~~~i~~l~~~~~~~~~l~~g~--~dg--~i~i~d~~~~~------------------- 358 (536)
.. ...++ ..-.....++|+|.... |+++. .++ .|.+. ..+.
T Consensus 158 ~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~-l~~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~~~ 234 (331)
T PF07995_consen 158 SIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR-LWAADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPPIG 234 (331)
T ss_dssp SB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE-EEEEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-EC
T ss_pred cCCCCCccccCCCceEEEEEeCCCccccEEEECCCCc-EEEEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCccc
Confidence 10 00011 11134567899998323 44432 222 23322 2111
Q ss_pred ----------cceeEeccCCCeEEEEEecCC------CCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-cccCceeEEE
Q 009380 359 ----------SATEWLLHEARINTIDFNPRN------PNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAY 421 (536)
Q Consensus 359 ----------~~~~~~~h~~~i~~i~~~p~~------~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~ 421 (536)
++..+. +...+..+.|.... ..+|++.-..+.|....+...... .....+. .....+..++
T Consensus 235 ~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~r~~~v~ 312 (331)
T PF07995_consen 235 DAPSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSV-TEEEEFLGGFGGRPRDVA 312 (331)
T ss_dssp TGSS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEE-EEEEEECTTSSS-EEEEE
T ss_pred cccCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCc-cceEEccccCCCCceEEE
Confidence 122233 33556677776422 135555555567777777543210 0111111 3444799999
Q ss_pred EccCCCeEEEEeCCCcEE
Q 009380 422 FSPSGSSLATTSFDDTIG 439 (536)
Q Consensus 422 ~sp~g~~l~t~s~dg~I~ 439 (536)
+.|||.++++...+|.|.
T Consensus 313 ~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 313 QGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EETTSEEEEEE-TTTTEE
T ss_pred EcCCCeEEEEECCCCeEe
Confidence 999999888888888774
No 419
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.18 E-value=0.74 Score=48.63 Aligned_cols=111 Identities=10% Similarity=0.077 Sum_probs=69.3
Q ss_pred CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe--ecCCCceeEEEec--CCCCCEEEEEECCCeEEEEECC---
Q 009380 283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV--YSSEYAVFSLSQQ--PNNVNTLYFGEGQGGLNIWDVR--- 355 (536)
Q Consensus 283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~--~~~~~~i~~l~~~--~~~~~~l~~g~~dg~i~i~d~~--- 355 (536)
..+.-+.-+..+ ..-++-+....+.|||...+..... +...+.|.+++|. |++ +.+++.+..+.|.+|--.
T Consensus 30 ~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchh
Confidence 344445444443 3333334456799999998865433 3457899999995 566 566666667788888532
Q ss_pred --CC----ccceeEe--ccC-CCeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 009380 356 --SR----KSATEWL--LHE-ARINTIDFNPRNPNIMATSSTDGTACIWDLR 398 (536)
Q Consensus 356 --~~----~~~~~~~--~h~-~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~ 398 (536)
.. ..+..+. .|+ .+|.+..|.++| .|++|+ ...+.|+|-.
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G--~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG--TLVVGS-GNQLFVFDKW 156 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCC--eEEEEe-CCEEEEECCC
Confidence 11 2233332 344 689999999977 344444 3578888743
No 420
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.16 E-value=2.9 Score=39.35 Aligned_cols=163 Identities=8% Similarity=0.028 Sum_probs=102.3
Q ss_pred ccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC--CCceeEEEecCCCCCEEEEEECCCeEEEEECCC
Q 009380 279 RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS--EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS 356 (536)
Q Consensus 279 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~--~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~ 356 (536)
.+-...|.++.|+|+. +.|++......-.|+=...|.+.....- -...-.|.|..++ .++++--.++.+.++.+..
T Consensus 82 ~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEcC
Confidence 3445569999999998 7777777666666665555655544432 3445667777665 5666666788888887765
Q ss_pred Cccce-----eEe----cc-CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc-------cCceeE
Q 009380 357 RKSAT-----EWL----LH-EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSH-------KRAVHS 419 (536)
Q Consensus 357 ~~~~~-----~~~----~h-~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~-------~~~v~~ 419 (536)
...+. .+. .+ ....-.++|.|.+ +.|..+=+-.-+.||.+....... .......+ -..|.+
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l-~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSL-SVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCccc-ccccccCcccccceEeecccc
Confidence 43211 111 12 4567789999977 455566566667777766432100 01111111 235788
Q ss_pred EEEcc-CCCeEEEEeCCCcEEEEeCCC
Q 009380 420 AYFSP-SGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 420 l~~sp-~g~~l~t~s~dg~I~iwd~~~ 445 (536)
+.|++ .+.+++.+..++.+.-.|...
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCC
Confidence 89998 667777777888888888643
No 421
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.88 E-value=7.9 Score=42.97 Aligned_cols=165 Identities=11% Similarity=0.106 Sum_probs=92.4
Q ss_pred cCCCceeEEEec---CC---CCCEEEEEECCCeEEEEECCCC---------------ccceeEe---ccCCCeEEEEEec
Q 009380 322 SSEYAVFSLSQQ---PN---NVNTLYFGEGQGGLNIWDVRSR---------------KSATEWL---LHEARINTIDFNP 377 (536)
Q Consensus 322 ~~~~~i~~l~~~---~~---~~~~l~~g~~dg~i~i~d~~~~---------------~~~~~~~---~h~~~i~~i~~~p 377 (536)
....+|..|+|. .. ..++|++=.. ..+.|+...-. .++..+. ....+...|+|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~-~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTE-TSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcC-CEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888887 21 1235555444 46777762111 2233333 1234678899999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-ccc----------CceeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 009380 378 RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHK----------RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF 446 (536)
Q Consensus 378 ~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~----------~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~ 446 (536)
.....||.....|...|||+.............. .+. ..-..|.|.++.+.|++++. ..+.++|+.+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 8888999999999999999932211111111111 111 23347889888777877764 45899999876
Q ss_pred CcceEEeccCCCCceeeeeEEEEcCC-CCEEEEEcCCCcEEEEcCCc
Q 009380 447 ENTSMIHHNNQTGRWISSFRAIWGWD-DSCVFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~~gs~dg~I~v~d~~~ 492 (536)
.....+.. ...+-.++.+.-++. ..++++-+ ...|..+++..
T Consensus 235 ~~~~~l~~---~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVT---AKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred Cccchhcc---CCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 55332211 122333344444554 12333222 24566666655
No 422
>PHA02790 Kelch-like protein; Provisional
Probab=94.82 E-value=1.2 Score=46.51 Aligned_cols=141 Identities=9% Similarity=-0.129 Sum_probs=67.9
Q ss_pred CccEEEEEeCCC-----cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC--CeEEEEECCCCeEEE
Q 009380 247 DVRMVVAGSKLG-----NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD--GLIRLMDAEKEVFDL 319 (536)
Q Consensus 247 ~~~~l~tg~~dg-----~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d--g~I~vwd~~~~~~~~ 319 (536)
++.++++|+.++ .+..||..+.. ...+..+....... +++. -++ ...+.|+.+ .++..||..++....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~--W~~~~~m~~~r~~~-~~v~-~~~-~iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNN--WIPIPPMNSPRLYA-SGVP-ANN-KLYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCE--EEECCCCCchhhcc-eEEE-ECC-EEEEECCcCCCCceEEEECCCCeEEE
Confidence 556778887653 45667766521 11111111111111 2222 244 566667653 457888887776654
Q ss_pred eecCCCcee--EEEecCCCCCEEEEEECCC---eEEEEECCCCccce--eEeccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380 320 VYSSEYAVF--SLSQQPNNVNTLYFGEGQG---GLNIWDVRSRKSAT--EWLLHEARINTIDFNPRNPNIMATSSTDGTA 392 (536)
Q Consensus 320 ~~~~~~~i~--~l~~~~~~~~~l~~g~~dg---~i~i~d~~~~~~~~--~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i 392 (536)
...-..+.. +++.. ++ .+.+.|+.++ .+..||.++.+-.. .+....... +++.. ++.+.+.|+ .+
T Consensus 346 ~~~l~~~r~~~~~~~~-~g-~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~~~--~~~IYv~GG---~~ 417 (480)
T PHA02790 346 MPSLLKPRCNPAVASI-NN-VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CALVF--GRRLFLVGR---NA 417 (480)
T ss_pred CCCCCCCCcccEEEEE-CC-EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEEEE--CCEEEEECC---ce
Confidence 433222221 22222 33 5666776543 46788887654321 111111111 22222 335666663 57
Q ss_pred EEEeCCCC
Q 009380 393 CIWDLRSM 400 (536)
Q Consensus 393 ~iwdl~~~ 400 (536)
.+||..+.
T Consensus 418 e~ydp~~~ 425 (480)
T PHA02790 418 EFYCESSN 425 (480)
T ss_pred EEecCCCC
Confidence 78998764
No 423
>PRK10115 protease 2; Provisional
Probab=94.69 E-value=8.2 Score=42.21 Aligned_cols=193 Identities=8% Similarity=0.025 Sum_probs=96.0
Q ss_pred CceEEEEEEecCCccEEEEEeC-----CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-----
Q 009380 235 GRITQMKFLPCSDVRMVVAGSK-----LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD----- 304 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~-----dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d----- 304 (536)
-.+..+.|+| |+++|+.+.. .-.|++.|+.++ ..+........ ..++|.+++..++++...+
T Consensus 127 ~~l~~~~~Sp--dg~~la~~~d~~G~E~~~l~v~d~~tg----~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~ 198 (686)
T PRK10115 127 YTLGGMAITP--DNTIMALAEDFLSRRQYGIRFRNLETG----NWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLP 198 (686)
T ss_pred EEEeEEEECC--CCCEEEEEecCCCcEEEEEEEEECCCC----CCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCC
Confidence 3467788899 9998887633 235888888763 22211111111 4589999983344444322
Q ss_pred CeEEEEECCCC--eEEEeecC-CCceeEEEecC-CCCCEEEEEEC---CCeEEEEECC--CCccceeEeccCCCeEEEEE
Q 009380 305 GLIRLMDAEKE--VFDLVYSS-EYAVFSLSQQP-NNVNTLYFGEG---QGGLNIWDVR--SRKSATEWLLHEARINTIDF 375 (536)
Q Consensus 305 g~I~vwd~~~~--~~~~~~~~-~~~i~~l~~~~-~~~~~l~~g~~---dg~i~i~d~~--~~~~~~~~~~h~~~i~~i~~ 375 (536)
..|..+++.++ .-..++.. +....-..+.+ ++ .+++..+. ++.+.+++.. .+.....+....+....+.
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~-~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 276 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSK-HYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD- 276 (686)
T ss_pred CEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCC-CEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-
Confidence 36888888877 33444432 23333223333 55 55544433 3578888853 3332222222222222222
Q ss_pred ecCCCCEEEEEeCC-Cc--EEEEeCCCCCCCCCCcceeecc--cCceeEEEEccCCCeEEEEeCCCcEEEEeC
Q 009380 376 NPRNPNIMATSSTD-GT--ACIWDLRSMATDKPEPMKVLSH--KRAVHSAYFSPSGSSLATTSFDDTIGIWSG 443 (536)
Q Consensus 376 ~p~~~~~l~s~s~d-g~--i~iwdl~~~~~~~~~~~~~~~~--~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~ 443 (536)
+..+ .+++....+ .. |...++... .....+..+ ...|..+.+. .+.++++...++.-+++-+
T Consensus 277 ~~~~-~ly~~tn~~~~~~~l~~~~~~~~----~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 277 HYQH-RFYLRSNRHGKNFGLYRTRVRDE----QQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred eCCC-EEEEEEcCCCCCceEEEecCCCc----ccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 3322 333333222 23 333344321 122334444 2467888887 3345555566776444433
No 424
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=94.58 E-value=0.32 Score=51.26 Aligned_cols=100 Identities=17% Similarity=0.187 Sum_probs=62.6
Q ss_pred EEEEEEecCCCCEEEEEECCC-----eEEEEECC---CCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC
Q 009380 285 ISGIVTQQYCLSKIFTSCYDG-----LIRLMDAE---KEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS 356 (536)
Q Consensus 285 V~~l~~~~~~~~~l~s~s~dg-----~I~vwd~~---~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~ 356 (536)
-..+.|-|+| ..++|-+.|| .|..+..+ .|.+....+.+..+..++|+-.. ..++++.. ..|.+|-..+
T Consensus 249 e~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s-~vlav~~~-n~~~lwttkN 325 (1243)
T COG5290 249 EHQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLS-TVLAVAEG-NLLKLWTTKN 325 (1243)
T ss_pred hhccccccCC-ceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHH-HHHHHhhc-ceEEEEEccc
Confidence 3458899999 8898877554 35555433 34555555666777888887665 44554444 4899997655
Q ss_pred CccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380 357 RKSATEWLLHEARINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 357 ~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s 387 (536)
-..-......-..+.-|.|+|...+.+...+
T Consensus 326 yhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d 356 (1243)
T COG5290 326 YHWYLKVERQIPGISYVKWHPEEKNTLLFRD 356 (1243)
T ss_pred eEEEEEEeecCCCcceeeeccccCcEEEEec
Confidence 4332222234455667889987666555444
No 425
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.55 E-value=2.5 Score=39.77 Aligned_cols=149 Identities=12% Similarity=0.115 Sum_probs=88.3
Q ss_pred CEEEEEEecCCCCEEEEEE---CCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEE-CCCCcc
Q 009380 284 PISGIVTQQYCLSKIFTSC---YDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWD-VRSRKS 359 (536)
Q Consensus 284 ~V~~l~~~~~~~~~l~s~s---~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d-~~~~~~ 359 (536)
.+.+.++++++ ..++... ....+.++.......... ....+..-.|.+++ .+.++...+....++. ...+..
T Consensus 25 ~~~s~AvS~dg-~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDG-SRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCC-CeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCC-CEEEEEcCCCceEEEEecCCCcc
Confidence 68899999998 6665554 334555555444333222 33478888999996 6666666666666663 333332
Q ss_pred c-eeEec--cCCCeEEEEEecCCCCEEEEEe--CCCcEEEEeCCCCCCC-C---CCcceee-cccCceeEEEEccCCCeE
Q 009380 360 A-TEWLL--HEARINTIDFNPRNPNIMATSS--TDGTACIWDLRSMATD-K---PEPMKVL-SHKRAVHSAYFSPSGSSL 429 (536)
Q Consensus 360 ~-~~~~~--h~~~i~~i~~~p~~~~~l~s~s--~dg~i~iwdl~~~~~~-~---~~~~~~~-~~~~~v~~l~~sp~g~~l 429 (536)
. ..+.. ....|..+.++|||.++.+... .++.|.+--+...... . ....... .....+..+.|.+++.++
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 1 12221 1128999999999966555442 3466776655432211 0 1111121 235688999999999877
Q ss_pred EEEeCCC
Q 009380 430 ATTSFDD 436 (536)
Q Consensus 430 ~t~s~dg 436 (536)
+.+...+
T Consensus 181 V~~~~~~ 187 (253)
T PF10647_consen 181 VLGRSAG 187 (253)
T ss_pred EEeCCCC
Confidence 7766544
No 426
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.37 E-value=6.9 Score=41.14 Aligned_cols=229 Identities=12% Similarity=0.029 Sum_probs=108.4
Q ss_pred CEEEEEECCCeEEEEECCCCe---EEEeecC-CCceeEEEecCCCCCEEEEEECCCe--EEEEECCCCccceeEeccCCC
Q 009380 296 SKIFTSCYDGLIRLMDAEKEV---FDLVYSS-EYAVFSLSQQPNNVNTLYFGEGQGG--LNIWDVRSRKSATEWLLHEAR 369 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~~~---~~~~~~~-~~~i~~l~~~~~~~~~l~~g~~dg~--i~i~d~~~~~~~~~~~~h~~~ 369 (536)
..++-+..+|.+....+.... ....++. .....++++..++..+|++|+.-|. +..|....-+.+..+. .-++
T Consensus 223 ~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~P 301 (504)
T PF10433_consen 223 DRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGP 301 (504)
T ss_dssp SEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----S
T ss_pred CEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCC
Confidence 789999999999998877533 2233333 5566778887665458888886554 4445533333344444 5678
Q ss_pred eEEEEEecC---CCC------EEEEEe---CCCcEEEEeCCCCCCCCCCcceeecc--cCceeEEEEcc-CCCeEEEEeC
Q 009380 370 INTIDFNPR---NPN------IMATSS---TDGTACIWDLRSMATDKPEPMKVLSH--KRAVHSAYFSP-SGSSLATTSF 434 (536)
Q Consensus 370 i~~i~~~p~---~~~------~l~s~s---~dg~i~iwdl~~~~~~~~~~~~~~~~--~~~v~~l~~sp-~g~~l~t~s~ 434 (536)
|..+++.+. +.. .+++++ .+|.+++.. .+-............ -..++.+.... ++.+|+.+..
T Consensus 302 i~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~ 379 (504)
T PF10433_consen 302 IVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFP 379 (504)
T ss_dssp EEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEES
T ss_pred ccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcC
Confidence 988888642 111 344443 467888764 221000001111122 33445555433 2456666555
Q ss_pred CCcEEEEeCC---CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeE
Q 009380 435 DDTIGIWSGV---NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRF 511 (536)
Q Consensus 435 dg~I~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~ 511 (536)
+ .-+++.+. ..+.+..+... .......++.+..-. +..++=... ..|++.+...++....+.......+ ...
T Consensus 380 ~-~T~vl~~~~~d~~e~~~e~~~~-~f~~~~~Tl~~~~~~-~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I-~~a 454 (504)
T PF10433_consen 380 N-ETRVLQISEGDDGEEVEEVEED-GFDTDEPTLAAGNVG-DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSII-VAA 454 (504)
T ss_dssp S-EEEEEEES----SSEEEEE----TS-SSS-EEEEEEET-TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS----SEE
T ss_pred C-ceEEEEEecccCCcchhhhhhc-cCCCCCCCeEEEEcC-CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeE-EEE
Confidence 4 44555553 23333222111 111111111122222 334444433 3488888777766666544333333 233
Q ss_pred eecCCCCCEEEEEccCCeEEEEec
Q 009380 512 HAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 512 ~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
+.. +.+++.+-.+|.+.++.+
T Consensus 455 ~~~---~~~v~v~~~~~~~~~~~~ 475 (504)
T PF10433_consen 455 SIN---DPQVLVALSGGELVYFEL 475 (504)
T ss_dssp EES---SSEEEEEE-TTEEEEEEE
T ss_pred EEC---CCEEEEEEeCCcEEEEEE
Confidence 342 367777777788887765
No 427
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=2.4 Score=37.71 Aligned_cols=178 Identities=13% Similarity=0.085 Sum_probs=89.9
Q ss_pred CEEEEEEC--CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC
Q 009380 338 NTLYFGEG--QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR 415 (536)
Q Consensus 338 ~~l~~g~~--dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~ 415 (536)
.++.+.+. ...|++||+++++.+..-......+..=-...-+..+.+-.-.+|.-.++|.++.+ .+..+...+
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~-----~lg~~~y~G 131 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE-----ELGRFSYEG 131 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh-----hhcccccCC
Confidence 45555543 34799999999987655442212221111111122333333457888899988753 333333344
Q ss_pred ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee-EEEEcCCCCEEEEEcCCCcEEEEcCCccc
Q 009380 416 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF-RAIWGWDDSCVFIGNMTRTVEVISPAQRR 494 (536)
Q Consensus 416 ~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~g~~l~~gs~dg~I~v~d~~~~~ 494 (536)
.=+.++. ++..|+.+....+++.-|..+.....++.... .+.++..+ .+.|- +|...+-.-.+..|-..+..+|+
T Consensus 132 eGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~-~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 132 EGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTD-DGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred cceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEE-CCeecccccceeee-ccEEEEeeeeecceEEEcCCCCc
Confidence 4455554 45557777666778888877665555443211 11111111 01111 34344433334445555555555
Q ss_pred cceecc-----------CCceeeeeeeEeecCCCCCEEEEEc
Q 009380 495 SVATLQ-----------SPYISAIPCRFHAHPHQVGTLAGAT 525 (536)
Q Consensus 495 ~~~~l~-----------~~~~~~~~~~~~~~p~~~~~lasgs 525 (536)
.+..+. ..+ ..+...+++.|..+.++++|-
T Consensus 208 V~~widlS~L~~~~~~~~~~-~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSN-DNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEEEEccCCchhcCccccc-cccccceeecCcCCeEEEecC
Confidence 443332 222 223356778886656777763
No 428
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.09 E-value=1.9 Score=46.10 Aligned_cols=101 Identities=10% Similarity=0.126 Sum_probs=71.1
Q ss_pred CEEEEEECCCeEEEEECCC-------C-------------eEEEeecCCCceeEEEec--CCCCCEEEEEECCCeEEEEE
Q 009380 296 SKIFTSCYDGLIRLMDAEK-------E-------------VFDLVYSSEYAVFSLSQQ--PNNVNTLYFGEGQGGLNIWD 353 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~-------~-------------~~~~~~~~~~~i~~l~~~--~~~~~~l~~g~~dg~i~i~d 353 (536)
..|+.|..||.|.+|.++. . ++...+.....+++++++ ... ++||+++....|.||-
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLIAVSSNSQEVTVFA 193 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEEEEecCCceEEEEE
Confidence 6789999999999997632 0 012233455689999998 555 7888888888888876
Q ss_pred CCCC--cc-ceeEeccCCCeEEEEEecCC--CC---EEEEEeCCCcEEEEeC
Q 009380 354 VRSR--KS-ATEWLLHEARINTIDFNPRN--PN---IMATSSTDGTACIWDL 397 (536)
Q Consensus 354 ~~~~--~~-~~~~~~h~~~i~~i~~~p~~--~~---~l~s~s~dg~i~iwdl 397 (536)
.... +. ...-..|...|.+|+|.++. +. .+++++-.|.+.+|++
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 5432 11 11111367789999998754 22 7888899999999888
No 429
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.06 E-value=5.6 Score=37.78 Aligned_cols=207 Identities=17% Similarity=0.180 Sum_probs=111.7
Q ss_pred ceeEEEecCCCCCEEEEEECCCeEEEEECC------CCcc-ceeEec-----cCCCeEEEEEecCC-----------CCE
Q 009380 326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVR------SRKS-ATEWLL-----HEARINTIDFNPRN-----------PNI 382 (536)
Q Consensus 326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~------~~~~-~~~~~~-----h~~~i~~i~~~p~~-----------~~~ 382 (536)
.-+.|+++|.+ .+.++....+...+||.. ..+. +-++.. .....+.+.|+... .-.
T Consensus 24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 46789999988 566666677899999986 2222 222221 23457788887532 123
Q ss_pred EEEEeCCCcEEEEeCCCCCCCC-CCcceee-cccCce-eEEEEcc--CCCeEEEEe-CCCcEEEEeCCCCCcceE---Ee
Q 009380 383 MATSSTDGTACIWDLRSMATDK-PEPMKVL-SHKRAV-HSAYFSP--SGSSLATTS-FDDTIGIWSGVNFENTSM---IH 453 (536)
Q Consensus 383 l~s~s~dg~i~iwdl~~~~~~~-~~~~~~~-~~~~~v-~~l~~sp--~g~~l~t~s-~dg~I~iwd~~~~~~~~~---~~ 453 (536)
|+.+++||+|.-|...-..... ...+.+. .....| ..+++.. .+.+|+.+. ..++|.|||-. ..++.. +.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~F~ 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGSFI 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCCcc
Confidence 6788899999999854321100 0111111 112333 3455554 355665554 67889999853 222211 00
Q ss_pred cc-C----------CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecC-----CC
Q 009380 454 HN-N----------QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHP-----HQ 517 (536)
Q Consensus 454 ~~-~----------~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p-----~~ 517 (536)
.. . ..+..+.+.-+.-.++...=+.|..-|.|.+||.... .++++.....-..+.-++..| ..
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeChhhhCCCC
Confidence 00 0 0011111111222334444445556689999998764 666664322111122233222 23
Q ss_pred CCEEEEEccCCeEEEEec
Q 009380 518 VGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 518 ~~~lasgs~Dg~v~iW~~ 535 (536)
+.+|+.--.||+|..||.
T Consensus 261 g~lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDP 278 (336)
T ss_pred CCeEEeecCCceeEEecC
Confidence 567877778999999985
No 430
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.00 E-value=1.7 Score=46.09 Aligned_cols=113 Identities=19% Similarity=0.257 Sum_probs=68.4
Q ss_pred eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc--CCCeEEEEeCCCcEEEEeCC---
Q 009380 370 INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGV--- 444 (536)
Q Consensus 370 i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~t~s~dg~I~iwd~~--- 444 (536)
..-+.-+.-+ ...++-+....+.|||.+.+. ..-...+.....|..+.|.. +|+.+++.|..+.|.+|.-.
T Consensus 32 ~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~---lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 32 PSLISGSSIK-KIAVVDSSRSELTIWDTRSGV---LEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred cceEeecccC-cEEEEECCCCEEEEEEcCCcE---EEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 3334444433 333344444579999998753 11111224578999999875 88999999999999998642
Q ss_pred ------CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380 445 ------NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 445 ------~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
...++..+.....+.+.+.. ..|.++|.+++.. .+.+.|++-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igd--s~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGD--SIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccc--eeEecCCeEEEEe--CCEEEEECC
Confidence 22334444333333344433 6788888655444 346888764
No 431
>PHA02790 Kelch-like protein; Provisional
Probab=93.98 E-value=2.1 Score=44.68 Aligned_cols=139 Identities=6% Similarity=-0.112 Sum_probs=66.7
Q ss_pred CEEEEEECCC-----eEEEEECCCCeEEEeecCCCc--eeEEEecCCCCCEEEEEECC--CeEEEEECCCCccc--eeEe
Q 009380 296 SKIFTSCYDG-----LIRLMDAEKEVFDLVYSSEYA--VFSLSQQPNNVNTLYFGEGQ--GGLNIWDVRSRKSA--TEWL 364 (536)
Q Consensus 296 ~~l~s~s~dg-----~I~vwd~~~~~~~~~~~~~~~--i~~l~~~~~~~~~l~~g~~d--g~i~i~d~~~~~~~--~~~~ 364 (536)
.+++.|+.++ .+..||..+...........+ -.+++. -++ .+.++|+.+ ..+..||..+++-. ..+.
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~~-~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-ANN-KLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-ECC-EEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 5566676543 577788888766544332111 112222 233 566667653 35788887655321 1111
Q ss_pred ccCCCeEEEEEecCCCCEEEEEeCCC---cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEE
Q 009380 365 LHEARINTIDFNPRNPNIMATSSTDG---TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441 (536)
Q Consensus 365 ~h~~~i~~i~~~p~~~~~l~s~s~dg---~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iw 441 (536)
...... +++.. ++.+.+.|+.++ .+..||.++..-....... ........+. -+|...+.|+ .+.+|
T Consensus 351 ~~r~~~-~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~--~~r~~~~~~~--~~~~IYv~GG---~~e~y 420 (480)
T PHA02790 351 KPRCNP-AVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY--YPHYKSCALV--FGRRLFLVGR---NAEFY 420 (480)
T ss_pred CCCccc-EEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC--CccccceEEE--ECCEEEEECC---ceEEe
Confidence 111111 22222 236777777653 4678888764311111111 0111111222 2566555553 57788
Q ss_pred eCCCC
Q 009380 442 SGVNF 446 (536)
Q Consensus 442 d~~~~ 446 (536)
|..+.
T Consensus 421 dp~~~ 425 (480)
T PHA02790 421 CESSN 425 (480)
T ss_pred cCCCC
Confidence 87654
No 432
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.68 E-value=7.6 Score=38.04 Aligned_cols=101 Identities=5% Similarity=0.081 Sum_probs=49.4
Q ss_pred CEEEEEECC-----CeEEEEECCCCeE----EEeecCCCce--eEEEecCCCCCEEEEEEC-----CCeEEEEECCCCcc
Q 009380 296 SKIFTSCYD-----GLIRLMDAEKEVF----DLVYSSEYAV--FSLSQQPNNVNTLYFGEG-----QGGLNIWDVRSRKS 359 (536)
Q Consensus 296 ~~l~s~s~d-----g~I~vwd~~~~~~----~~~~~~~~~i--~~l~~~~~~~~~l~~g~~-----dg~i~i~d~~~~~~ 359 (536)
.+++.|+.+ ..+..+|+.+... ...-....+. .+++.. ++ .+.+.|+. ...+..||+.+.+-
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~-~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DG-TLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CC-EEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 566667654 3566777776553 1111111111 122222 23 56666664 23688899886543
Q ss_pred ce--eEeccCCCeEEEEEecCCCCEEEEEeCCC----cEEEEeCCCC
Q 009380 360 AT--EWLLHEARINTIDFNPRNPNIMATSSTDG----TACIWDLRSM 400 (536)
Q Consensus 360 ~~--~~~~h~~~i~~i~~~p~~~~~l~s~s~dg----~i~iwdl~~~ 400 (536)
.. .+.. .......+..-++ ++.+.|+.++ .+.+||+.+.
T Consensus 152 ~~~~~~p~-~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FELPDFPG-EPRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eECCCCCC-CCCCcceEEEECC-EEEEEcCCCCccccceEEEecCCC
Confidence 21 1111 1111122222223 6777787654 2568888764
No 433
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.67 E-value=6.3 Score=37.08 Aligned_cols=148 Identities=11% Similarity=0.006 Sum_probs=85.0
Q ss_pred ceEEEEEEecCCccEEEEEe---CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEE-
Q 009380 236 RITQMKFLPCSDVRMVVAGS---KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD- 311 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~---~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd- 311 (536)
.+.+.++++ ++..++.-. ....++++.... .....+. ...+..-.|.+++ ...+....+...+++.
T Consensus 25 ~~~s~AvS~--dg~~~A~v~~~~~~~~L~~~~~~~-----~~~~~~~--g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSP--DGSRVAAVSEGDGGRSLYVGPAGG-----PVRPVLT--GGSLTRPSWDPDG-WVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECC--CCCeEEEEEEcCCCCEEEEEcCCC-----cceeecc--CCccccccccCCC-CEEEEEcCCCceEEEEe
Confidence 688999999 888776655 333455554432 2222222 2367788999997 6666656566666663
Q ss_pred CCCCeE--EEeec--CCCceeEEEecCCCCCEEEEEE--CCCeEEEEECCC---C--c----cceeEeccCCCeEEEEEe
Q 009380 312 AEKEVF--DLVYS--SEYAVFSLSQQPNNVNTLYFGE--GQGGLNIWDVRS---R--K----SATEWLLHEARINTIDFN 376 (536)
Q Consensus 312 ~~~~~~--~~~~~--~~~~i~~l~~~~~~~~~l~~g~--~dg~i~i~d~~~---~--~----~~~~~~~h~~~i~~i~~~ 376 (536)
...+.. ..+.. ....|..+.++|+|.+..++.. .++.|.+--+.. + . .+.........+.++.|.
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred cCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 333322 22211 1128999999999955544442 346777765542 2 1 111112335688999999
Q ss_pred cCCCCEEEEEe-CCCcEEE
Q 009380 377 PRNPNIMATSS-TDGTACI 394 (536)
Q Consensus 377 p~~~~~l~s~s-~dg~i~i 394 (536)
+++. +++.+. .++.+..
T Consensus 175 ~~~~-L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 175 DDST-LVVLGRSAGGPVVR 192 (253)
T ss_pred CCCE-EEEEeCCCCCceeE
Confidence 9774 444444 3443333
No 434
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.28 E-value=0.29 Score=31.43 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=27.1
Q ss_pred CCeEEEEEecCCC--CEEEEEeCCCcEEEEeCCC
Q 009380 368 ARINTIDFNPRNP--NIMATSSTDGTACIWDLRS 399 (536)
Q Consensus 368 ~~i~~i~~~p~~~--~~l~s~s~dg~i~iwdl~~ 399 (536)
+.|.++.|+|... .+|+.+-.-|.|.|+|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998654 6888888889999999995
No 435
>PLN02193 nitrile-specifier protein
Probab=93.20 E-value=9.5 Score=39.67 Aligned_cols=101 Identities=10% Similarity=0.105 Sum_probs=52.6
Q ss_pred CEEEEEECC-----CeEEEEECCCCeEEEeecC---CCc--eeEEEecCCCCCEEEEEECCC-----eEEEEECCCCccc
Q 009380 296 SKIFTSCYD-----GLIRLMDAEKEVFDLVYSS---EYA--VFSLSQQPNNVNTLYFGEGQG-----GLNIWDVRSRKSA 360 (536)
Q Consensus 296 ~~l~s~s~d-----g~I~vwd~~~~~~~~~~~~---~~~--i~~l~~~~~~~~~l~~g~~dg-----~i~i~d~~~~~~~ 360 (536)
.+++.|+.+ ..+.+||+.+.....+... ..+ -.+++.. ++ .+++.|+.++ .+..||+.+.+-.
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~-~~-~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD-EE-NVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE-CC-EEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 566666654 3588899988776654322 111 1122222 23 5666776543 4678887765421
Q ss_pred eeE-----eccCCCeEEEEEecCCCCEEEEEeCC----CcEEEEeCCCCC
Q 009380 361 TEW-----LLHEARINTIDFNPRNPNIMATSSTD----GTACIWDLRSMA 401 (536)
Q Consensus 361 ~~~-----~~h~~~i~~i~~~p~~~~~l~s~s~d----g~i~iwdl~~~~ 401 (536)
..- ...... .++... ++ .+++.++.+ ..+.+||+.+.+
T Consensus 308 ~~~~~~~~~~~R~~-~~~~~~-~g-kiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 308 HCSTPGDSFSIRGG-AGLEVV-QG-KVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred eCCCCCCCCCCCCC-cEEEEE-CC-cEEEEECCCCCccCceEEEECCCCE
Confidence 110 001111 122222 24 566766655 458899988753
No 436
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.18 E-value=0.033 Score=59.02 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=49.8
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEE-----------ecCCCCEEEEEECC
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVT-----------QQYCLSKIFTSCYD 304 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~-----------~~~~~~~l~s~s~d 304 (536)
.|..+-|-+ +.-++..+.+++.|++.+.+. .....+.+|+..+..++| +||| ..|++++.|
T Consensus 185 ~V~wcp~~~--~~~~ic~~~~~~~i~lL~~~r-----a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~d 256 (1283)
T KOG1916|consen 185 LVSWCPIAV--NKVYICYGLKGGEIRLLNINR-----ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISD 256 (1283)
T ss_pred eeeeccccc--ccceeeeccCCCceeEeeech-----HHHHHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecC
Confidence 344444555 557888999999999988875 233556668877766654 6777 788888888
Q ss_pred CeEEEEECC
Q 009380 305 GLIRLMDAE 313 (536)
Q Consensus 305 g~I~vwd~~ 313 (536)
|.++.|.+.
T Consensus 257 G~v~f~Qiy 265 (1283)
T KOG1916|consen 257 GSVGFYQIY 265 (1283)
T ss_pred Cccceeeee
Confidence 888877653
No 437
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.01 E-value=3.9 Score=33.78 Aligned_cols=108 Identities=9% Similarity=0.042 Sum_probs=68.6
Q ss_pred EEEecCCCCEEEEEECCCeEEEEECCCC--------eEEEeecCCCceeEEEecC----CCCCEEEEEECCCeEEEEECC
Q 009380 288 IVTQQYCLSKIFTSCYDGLIRLMDAEKE--------VFDLVYSSEYAVFSLSQQP----NNVNTLYFGEGQGGLNIWDVR 355 (536)
Q Consensus 288 l~~~~~~~~~l~s~s~dg~I~vwd~~~~--------~~~~~~~~~~~i~~l~~~~----~~~~~l~~g~~dg~i~i~d~~ 355 (536)
-.|.... ..|+.++.-|.|.|++.... ...........|++|+-.+ ++...|+.|+.. .|..||+.
T Consensus 4 GkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE 81 (136)
T ss_pred EEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence 3455555 56778888889999987643 2344556677888886654 234678888776 89999998
Q ss_pred CCccceeEeccCCCeEEEEEecC---CCCEEEEEeCCCcEEEEeCCC
Q 009380 356 SRKSATEWLLHEARINTIDFNPR---NPNIMATSSTDGTACIWDLRS 399 (536)
Q Consensus 356 ~~~~~~~~~~h~~~i~~i~~~p~---~~~~l~s~s~dg~i~iwdl~~ 399 (536)
...-+..-. -.+.|++|.+-.- ...++++|+ +..|.-||...
T Consensus 82 ~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G 126 (136)
T PF14781_consen 82 NNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG 126 (136)
T ss_pred cCchhhhhh-CccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence 766543322 3467777776321 113455544 55666666543
No 438
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.91 E-value=11 Score=37.53 Aligned_cols=190 Identities=10% Similarity=0.144 Sum_probs=108.6
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec----CCCCE-EEEEEC-C---CeEEEEECC--CC
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ----YCLSK-IFTSCY-D---GLIRLMDAE--KE 315 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~----~~~~~-l~s~s~-d---g~I~vwd~~--~~ 315 (536)
...+|+...+++-+.+||++ ++.+..+. .+.++.+.... .+... |+.++. + .+|++|.+. ++
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-----Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-----GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-----S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred ccceEEEEeCCCCEEEEcCC-----CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 55688888999999999998 56666653 23444444321 23121 444443 2 479999775 45
Q ss_pred eEEEeec-------CCCceeEEEec--C-CCCCEEEEEECCCeEEEEECC---CC----ccceeEeccCCCeEEEEEecC
Q 009380 316 VFDLVYS-------SEYAVFSLSQQ--P-NNVNTLYFGEGQGGLNIWDVR---SR----KSATEWLLHEARINTIDFNPR 378 (536)
Q Consensus 316 ~~~~~~~-------~~~~i~~l~~~--~-~~~~~l~~g~~dg~i~i~d~~---~~----~~~~~~~~h~~~i~~i~~~p~ 378 (536)
.+..+.. .-..+..+|+. + ++.-++++...+|.+..|-+. .+ +.+++|.. ...+..+.....
T Consensus 140 ~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe 218 (381)
T PF02333_consen 140 ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDE 218 (381)
T ss_dssp EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETT
T ss_pred cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecc
Confidence 5544322 11346677764 3 343467778899998888775 23 23666663 457888888875
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee---cccCceeEEEEcc--CC-CeEEEEe-CCCcEEEEeCCC
Q 009380 379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVL---SHKRAVHSAYFSP--SG-SSLATTS-FDDTIGIWSGVN 445 (536)
Q Consensus 379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~---~~~~~v~~l~~sp--~g-~~l~t~s-~dg~I~iwd~~~ 445 (536)
. ..|..+-++.-|.-|+..-........+... .....|-.|++-. ++ .||++++ .+++..||+...
T Consensus 219 ~-g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 219 T-GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp T-TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred c-CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 5 5888898887676677653322122222121 2345677777653 43 3555555 577899999764
No 439
>PLN02153 epithiospecifier protein
Probab=92.88 E-value=11 Score=37.37 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=33.8
Q ss_pred CEEEEEECC-----CeEEEEECCCCeEEEeecC-----C--CceeEEEecCCCCCEEEEEECC-----------CeEEEE
Q 009380 296 SKIFTSCYD-----GLIRLMDAEKEVFDLVYSS-----E--YAVFSLSQQPNNVNTLYFGEGQ-----------GGLNIW 352 (536)
Q Consensus 296 ~~l~s~s~d-----g~I~vwd~~~~~~~~~~~~-----~--~~i~~l~~~~~~~~~l~~g~~d-----------g~i~i~ 352 (536)
.+++.|+.+ ..+.+||+.+.....+... . ..-.+++.. ++ .+++.|+.+ ..|.+|
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD-EN-HVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE-CC-EEEEECCccCCCccCCCcccceEEEE
Confidence 566666653 3578899988766544321 1 111122222 33 566666643 247788
Q ss_pred ECCCCc
Q 009380 353 DVRSRK 358 (536)
Q Consensus 353 d~~~~~ 358 (536)
|+.+.+
T Consensus 165 d~~~~~ 170 (341)
T PLN02153 165 NIADGK 170 (341)
T ss_pred ECCCCe
Confidence 887653
No 440
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.77 E-value=6.3 Score=39.48 Aligned_cols=153 Identities=10% Similarity=0.041 Sum_probs=72.8
Q ss_pred CCeEEEEEecCCCCEEEEEe-----------CCC-cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC
Q 009380 368 ARINTIDFNPRNPNIMATSS-----------TDG-TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD 435 (536)
Q Consensus 368 ~~i~~i~~~p~~~~~l~s~s-----------~dg-~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d 435 (536)
.....|+|.++| +++++-. ..+ .|.+++-..+.........+...-...+.+++.++| |++++..
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 345678888877 4555432 123 677776544322111222222333456889999988 4444544
Q ss_pred CcEEEEeCCCCC----cceEE-eccCCC-C-ceeeeeEEEEcCCCCEEEEEcCC-------------------CcEEEEc
Q 009380 436 DTIGIWSGVNFE----NTSMI-HHNNQT-G-RWISSFRAIWGWDDSCVFIGNMT-------------------RTVEVIS 489 (536)
Q Consensus 436 g~I~iwd~~~~~----~~~~~-~~~~~~-~-~~~~~~~~~~s~~g~~l~~gs~d-------------------g~I~v~d 489 (536)
...++.|..... ....+ ...... . .......+.|.|||.+.++-+.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 433344543211 11222 111111 0 01112236789999775544421 3455555
Q ss_pred CCccccceeccCCceeeeeeeEeecCCCCCEEEEEccC
Q 009380 490 PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG 527 (536)
Q Consensus 490 ~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D 527 (536)
..+++ +..+.... ..+..++|+| ++.++++-+.+
T Consensus 171 pdg~~-~e~~a~G~--rnp~Gl~~d~-~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGK-LRVVAHGF--QNPYGHSVDS-WGDVFFCDNDD 204 (367)
T ss_pred cCCCe-EEEEecCc--CCCccceECC-CCCEEEEccCC
Confidence 55443 22222222 2224678888 56776664433
No 441
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.75 E-value=4.2 Score=41.14 Aligned_cols=151 Identities=12% Similarity=0.138 Sum_probs=92.5
Q ss_pred EEEEEEecCCccEEE-EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC------CCEEEEEECCCeEEEE
Q 009380 238 TQMKFLPCSDVRMVV-AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC------LSKIFTSCYDGLIRLM 310 (536)
Q Consensus 238 ~~v~~~p~~~~~~l~-tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~------~~~l~s~s~dg~I~vw 310 (536)
..+..+.. +..+|. .|+....++-.|+.. ++.+..+..|... -+.|.|+. +..-+.|-.+..|.-.
T Consensus 470 ~K~mlh~~-dssli~~dg~~~~kLykmDIEr----GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrI 542 (776)
T COG5167 470 EKIMLHDN-DSSLIYLDGGERDKLYKMDIER----GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRI 542 (776)
T ss_pred hhceeecC-CcceEEecCCCcccceeeeccc----ceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEe
Confidence 33444432 444444 455555666667665 7788888888765 46777753 1223344445555555
Q ss_pred ECCC-C-eEEEe----ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEE
Q 009380 311 DAEK-E-VFDLV----YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMA 384 (536)
Q Consensus 311 d~~~-~-~~~~~----~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~ 384 (536)
|.+- + ++... +.......|..-..+| ++++++..|.|++||.-.-..-..+.+....|..|....+|..+|+
T Consensus 543 DPR~~gNKi~v~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ila 620 (776)
T COG5167 543 DPRARGNKIKVVESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILA 620 (776)
T ss_pred cccccCCceeeeeehhccccccccccccccCc--eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEE
Confidence 6542 2 22111 1223344444444444 8999999999999996543434455677888999999998876666
Q ss_pred EEeCCCcEEEEeCCC
Q 009380 385 TSSTDGTACIWDLRS 399 (536)
Q Consensus 385 s~s~dg~i~iwdl~~ 399 (536)
|| ...+.+-|++-
T Consensus 621 TC--k~yllL~d~~i 633 (776)
T COG5167 621 TC--KNYLLLTDVPI 633 (776)
T ss_pred ee--cceEEEEeccc
Confidence 66 45778888763
No 442
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.72 E-value=2.8 Score=42.28 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=89.4
Q ss_pred CEEE-EEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCC------CCEEEEEECCCeEEEEECCCCc-cceeEe---
Q 009380 296 SKIF-TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNN------VNTLYFGEGQGGLNIWDVRSRK-SATEWL--- 364 (536)
Q Consensus 296 ~~l~-s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~------~~~l~~g~~dg~i~i~d~~~~~-~~~~~~--- 364 (536)
++|+ .+..-..++-.|++.|+..........+ -+.|.|.. +..-++|-.+..|.-.|.|-.. .+....
T Consensus 480 sli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKd 558 (776)
T COG5167 480 SLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKD 558 (776)
T ss_pred ceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehh
Confidence 5544 4555677888899999887776655555 56676643 1234456666677777877432 222111
Q ss_pred -ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeC
Q 009380 365 -LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG 443 (536)
Q Consensus 365 -~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~ 443 (536)
.......|..-... -++|.+|..|-|++||--... ....+.+....|..|..+.+|.++++.|. ..|-+-|+
T Consensus 559 Y~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~r----AKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 559 YKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKR----AKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred ccccccccccccccC--ceEEEecCCCceeeehhhcch----hhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 11122233333332 389999999999999954321 22334466788999999999998888774 45777775
Q ss_pred C
Q 009380 444 V 444 (536)
Q Consensus 444 ~ 444 (536)
.
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 4
No 443
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.48 E-value=9.2 Score=35.71 Aligned_cols=150 Identities=16% Similarity=0.197 Sum_probs=93.3
Q ss_pred CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 009380 325 YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK 404 (536)
Q Consensus 325 ~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~ 404 (536)
.....++-.+++ ...+++...|.|--.|.++++....--+....-..|..-||+..++.-.+. -|.-.|-+++...
T Consensus 62 ~ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~--aI~R~dpkt~evt- 137 (353)
T COG4257 62 SAPFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL--AIGRLDPKTLEVT- 137 (353)
T ss_pred CCccccccCCCC-ceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc--eeEEecCcccceE-
Confidence 455677888888 788888888999999999998654444556666778888988655543332 4666666554311
Q ss_pred CCcceeecccCceeEEEEccCCCeEEEEeC---------CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCE
Q 009380 405 PEPMKVLSHKRAVHSAYFSPSGSSLATTSF---------DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC 475 (536)
Q Consensus 405 ~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 475 (536)
...+....-........|++.|++-+|+.. .+.|++|+...+.- ..+ ++-.|+|..
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~g--------pyG-------i~atpdGsv 202 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGG--------PYG-------ICATPDGSV 202 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCC--------Ccc-------eEECCCCcE
Confidence 112222234567888999999998888752 13355555432111 111 334677777
Q ss_pred EEEEcCCCcEEEEcCCcc
Q 009380 476 VFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 476 l~~gs~dg~I~v~d~~~~ 493 (536)
.++.-.++.|-..|..++
T Consensus 203 wyaslagnaiaridp~~~ 220 (353)
T COG4257 203 WYASLAGNAIARIDPFAG 220 (353)
T ss_pred EEEeccccceEEcccccC
Confidence 666555555665565554
No 444
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.47 E-value=10 Score=36.13 Aligned_cols=223 Identities=10% Similarity=0.075 Sum_probs=118.2
Q ss_pred CCEEEEEEecCCCCEEEEEECCCeEEEEECCC------C-eEEEeec------CCCceeEEEecCCC-----------CC
Q 009380 283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK------E-VFDLVYS------SEYAVFSLSQQPNN-----------VN 338 (536)
Q Consensus 283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~------~-~~~~~~~------~~~~i~~l~~~~~~-----------~~ 338 (536)
..-+.|+++|.+ .+.++...-+...+||... . .+..... .....+.+.|+... ..
T Consensus 23 ~N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 345789999988 7777777788999999871 1 1221111 23456777776432 23
Q ss_pred EEEEEECCCeEEEEECCCCcc-----ceeEe-ccCCCe-EEEEEecC--CCCEEEEEeCCCcEEEEeCCCCCCCC-----
Q 009380 339 TLYFGEGQGGLNIWDVRSRKS-----ATEWL-LHEARI-NTIDFNPR--NPNIMATSSTDGTACIWDLRSMATDK----- 404 (536)
Q Consensus 339 ~l~~g~~dg~i~i~d~~~~~~-----~~~~~-~h~~~i-~~i~~~p~--~~~~l~s~s~dg~i~iwdl~~~~~~~----- 404 (536)
.++.+++||+|.-|...-... ...+. .....| ..+++... +..+.++--..++|.|||-.-.....
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 468889999999998543322 11222 112333 34555432 33344444567999999855421000
Q ss_pred -C------Ccc--eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCC-ceeeeeE-EEEcC-C
Q 009380 405 -P------EPM--KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTG-RWISSFR-AIWGW-D 472 (536)
Q Consensus 405 -~------~~~--~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~~-~~~s~-~ 472 (536)
+ .+. ...+..--|+-..-.++++.=+.+..-|.|-+||+. +..++.+....... .|-..+. ..|.. .
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 0 000 000111112222223333333333445689999974 55555553322111 1111110 12322 3
Q ss_pred CCEEEEEcCCCcEEEEcCCccccceeccCCceeee
Q 009380 473 DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAI 507 (536)
Q Consensus 473 g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~ 507 (536)
|.+|+---.||+|.+||..+++.+..+.......+
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi 295 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPV 295 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeE
Confidence 44555445689999999999988888876544444
No 445
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.46 E-value=13 Score=37.36 Aligned_cols=26 Identities=4% Similarity=-0.052 Sum_probs=16.9
Q ss_pred CEEEEEECC-----------CeEEEEECCCCeEEEee
Q 009380 296 SKIFTSCYD-----------GLIRLMDAEKEVFDLVY 321 (536)
Q Consensus 296 ~~l~s~s~d-----------g~I~vwd~~~~~~~~~~ 321 (536)
.+++.|+.. ..+..||..+.....+.
T Consensus 86 ~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~ 122 (376)
T PRK14131 86 KLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLD 122 (376)
T ss_pred EEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCC
Confidence 566666653 24778898887665543
No 446
>PRK13684 Ycf48-like protein; Provisional
Probab=92.42 E-value=12 Score=36.89 Aligned_cols=278 Identities=9% Similarity=-0.032 Sum_probs=124.7
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceE-EeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIY-LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA 312 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~-~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~ 312 (536)
...+++|.|.. +..-+++|. +|. ||...+.......+. .+......+.++.|.+. ..++ ++..|.|.. ..
T Consensus 45 ~~~l~~v~F~d--~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~--~~~~-~G~~g~i~~-S~ 115 (334)
T PRK13684 45 EANLLDIAFTD--PNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD--EGWI-VGQPSLLLH-TT 115 (334)
T ss_pred CCceEEEEEeC--CCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC--cEEE-eCCCceEEE-EC
Confidence 45789999986 566677775 453 444433211111111 11112234777888643 3344 344554332 22
Q ss_pred CCC-eEEEee---cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEe
Q 009380 313 EKE-VFDLVY---SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 313 ~~~-~~~~~~---~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s 387 (536)
+.+ ...... ........+.....+ .++.++..|.|..=+ ..++.=..+. .-...+.++.+.|++ .+++++
T Consensus 116 DgG~tW~~~~~~~~~~~~~~~i~~~~~~--~~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g-~~v~~g- 190 (334)
T PRK13684 116 DGGKNWTRIPLSEKLPGSPYLITALGPG--TAEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDG-KYVAVS- 190 (334)
T ss_pred CCCCCCeEccCCcCCCCCceEEEEECCC--cceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCC-eEEEEe-
Confidence 222 222211 011111222222222 233344455443322 1233211111 224568899999966 455554
Q ss_pred CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEE
Q 009380 388 TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRA 467 (536)
Q Consensus 388 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (536)
..|.+..- .+.+. .............++++.+.+++..++++ ..|.+.+=....+..-..+.... .......+.+
T Consensus 191 ~~G~i~~s-~~~gg--~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~-~~~~~~l~~v 265 (334)
T PRK13684 191 SRGNFYST-WEPGQ--TAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPE-ITNGYGYLDL 265 (334)
T ss_pred CCceEEEE-cCCCC--CeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCc-cccccceeeE
Confidence 46655432 11211 00111122345688999999998876654 46765432233333222221110 1011123346
Q ss_pred EEcCCCCEEEEEcCCCcEEEEcCCccccceeccC-CceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 468 IWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS-PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 468 ~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~-~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
.+.+++..+++| .+|.|. .....++.-..+.. .........+.+.. + +.....+..|.|.-|+
T Consensus 266 ~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~-~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 266 AYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-P-EKGFVLGQRGVLLRYV 329 (334)
T ss_pred EEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-C-CceEEECCCceEEEec
Confidence 678877766555 466554 44555544333321 11111112333332 2 3445566678887775
No 447
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.31 E-value=0.71 Score=29.65 Aligned_cols=32 Identities=34% Similarity=0.340 Sum_probs=27.4
Q ss_pred CceeEEEecCCCC--CEEEEEECCCeEEEEECCC
Q 009380 325 YAVFSLSQQPNNV--NTLYFGEGQGGLNIWDVRS 356 (536)
Q Consensus 325 ~~i~~l~~~~~~~--~~l~~g~~dg~i~i~d~~~ 356 (536)
+.|.++.|+|... .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999998764 6888888899999999995
No 448
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.20 E-value=21 Score=39.11 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=52.2
Q ss_pred CCEEEEEEecCCCCEEEEEECCCeEEEEECCC----------Ce----EEEe--------ecCCCceeEEEecCCC--CC
Q 009380 283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK----------EV----FDLV--------YSSEYAVFSLSQQPNN--VN 338 (536)
Q Consensus 283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~----------~~----~~~~--------~~~~~~i~~l~~~~~~--~~ 338 (536)
-.|..|.++|+| .+|+..|..| |.|..+.. +. +... ......|..+.|+|.+ ..
T Consensus 85 f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 468899999999 8888888766 44544421 11 1111 1234678999999974 46
Q ss_pred EEEEEECCCeEEEEECCCCc
Q 009380 339 TLYFGEGQGGLNIWDVRSRK 358 (536)
Q Consensus 339 ~l~~g~~dg~i~i~d~~~~~ 358 (536)
.|++=+.|+++++||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 88888999999999997543
No 449
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.09 E-value=13 Score=36.69 Aligned_cols=72 Identities=8% Similarity=-0.090 Sum_probs=34.1
Q ss_pred CccEEEEEeCC-CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-----------CeEEEEECCC
Q 009380 247 DVRMVVAGSKL-GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-----------GLIRLMDAEK 314 (536)
Q Consensus 247 ~~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-----------g~I~vwd~~~ 314 (536)
++.+.++|+.. ..+..+|+.........+..+......-.+++. -++ .+.+.|+.+ ..+..||..+
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~-~~~-~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~ 94 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA-IDG-KLYVFGGIGKANSEGSPQVFDDVYRYDPKK 94 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEE-ECC-EEEEEeCCCCCCCCCcceecccEEEEECCC
Confidence 44566666543 456667764321112222222111111112222 234 666667653 2477889888
Q ss_pred CeEEEe
Q 009380 315 EVFDLV 320 (536)
Q Consensus 315 ~~~~~~ 320 (536)
.....+
T Consensus 95 ~~W~~~ 100 (346)
T TIGR03547 95 NSWQKL 100 (346)
T ss_pred CEEecC
Confidence 776554
No 450
>PRK10115 protease 2; Provisional
Probab=91.84 E-value=23 Score=38.83 Aligned_cols=244 Identities=11% Similarity=0.009 Sum_probs=120.3
Q ss_pred ceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC------C
Q 009380 185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL------G 258 (536)
Q Consensus 185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d------g 258 (536)
.+..+.++|||+.++...+..- .....|.+.++.... .+.....+.-..++|++ |++.|+....+ .
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G-----~E~~~l~v~d~~tg~-~l~~~i~~~~~~~~w~~--D~~~~~y~~~~~~~~~~~ 199 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLS-----RRQYGIRFRNLETGN-WYPELLDNVEPSFVWAN--DSWTFYYVRKHPVTLLPY 199 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCC-----cEEEEEEEEECCCCC-CCCccccCcceEEEEee--CCCEEEEEEecCCCCCCC
Confidence 3456778999999987633222 222356666764332 11222222225699999 77766555432 3
Q ss_pred cEEEEECCCCCCCCCceEEeccCCCCEEEEEEec-CCCCEEEEEEC---CCeEEEEECC--CCeEEEeecCCCce-eEEE
Q 009380 259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ-YCLSKIFTSCY---DGLIRLMDAE--KEVFDLVYSSEYAV-FSLS 331 (536)
Q Consensus 259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~~l~s~s~---dg~I~vwd~~--~~~~~~~~~~~~~i-~~l~ 331 (536)
.|..+++.+.......+ +........-..+.+ ++ .+++..+. ++.+.+++.. .+....+......+ ..+.
T Consensus 200 ~v~~h~lgt~~~~d~lv--~~e~~~~~~~~~~~s~d~-~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (686)
T PRK10115 200 QVWRHTIGTPASQDELV--YEEKDDTFYVSLHKTTSK-HYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD 276 (686)
T ss_pred EEEEEECCCChhHCeEE--EeeCCCCEEEEEEEcCCC-CEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE
Confidence 67788888743222333 333223333223333 55 65554433 4578888853 33333333333222 2222
Q ss_pred ecCCCCCEEEEEECC----CeEEEEECCCCccceeEecc-C-CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 009380 332 QQPNNVNTLYFGEGQ----GGLNIWDVRSRKSATEWLLH-E-ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405 (536)
Q Consensus 332 ~~~~~~~~l~~g~~d----g~i~i~d~~~~~~~~~~~~h-~-~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~ 405 (536)
+.. ..|+.-+.. ..|...++........+..+ . ..|..+.+.. ..++++...+|.-+++-+.... .
T Consensus 277 -~~~--~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~--~~l~~~~~~~g~~~l~~~~~~~---~ 348 (686)
T PRK10115 277 -HYQ--HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT--DWLVVEERQRGLTSLRQINRKT---R 348 (686)
T ss_pred -eCC--CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC--CEEEEEEEeCCEEEEEEEcCCC---C
Confidence 222 344444432 24555555532223344445 3 3688888873 3677777777776655443211 0
Q ss_pred Ccceee-cccCceeEEEEc--cCCC-eEEEEeC---CCcEEEEeCCCCC
Q 009380 406 EPMKVL-SHKRAVHSAYFS--PSGS-SLATTSF---DDTIGIWSGVNFE 447 (536)
Q Consensus 406 ~~~~~~-~~~~~v~~l~~s--p~g~-~l~t~s~---dg~I~iwd~~~~~ 447 (536)
....+. .....+..+.++ +++. ++++.+. -+.+..||+.+.+
T Consensus 349 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 349 EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 112211 222223333444 3333 4444332 3568888887654
No 451
>PRK13684 Ycf48-like protein; Provisional
Probab=91.32 E-value=16 Score=36.02 Aligned_cols=157 Identities=9% Similarity=0.019 Sum_probs=78.9
Q ss_pred CCceeEEEecCCCCCEEEEEECCCeEEEEECCCC-ccceeE-eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCC
Q 009380 324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR-KSATEW-LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMA 401 (536)
Q Consensus 324 ~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~-~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~ 401 (536)
...+.++.+.+++ .++..+..|.+..- ...+ +.-... ..-...++++.+.+++ ..++++ ..|.+.+=....+.
T Consensus 172 ~g~~~~i~~~~~g--~~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g-~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDG--KYVAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDG-NLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCC--eEEEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCC-CEEEEe-cCCEEEEccCCCCC
Confidence 4578899999876 44455556655542 1122 211112 2334678999999977 455554 46766532233322
Q ss_pred CCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC
Q 009380 402 TDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM 481 (536)
Q Consensus 402 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~ 481 (536)
.-.............+.++.+.|++..+ .++.+|.|. .....++.-.......... -....+.|..++..++ .+.
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~-~S~d~G~tW~~~~~~~~~~--~~~~~~~~~~~~~~~~-~G~ 321 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLL-VSKDGGKTWEKDPVGEEVP--SNFYKIVFLDPEKGFV-LGQ 321 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEE-EEcCCCeEE-EeCCCCCCCeECCcCCCCC--cceEEEEEeCCCceEE-ECC
Confidence 1010111101123457889999987754 455667554 3444444333332101111 1222345555555555 445
Q ss_pred CCcEEEEcC
Q 009380 482 TRTVEVISP 490 (536)
Q Consensus 482 dg~I~v~d~ 490 (536)
.|.|-.|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 677776653
No 452
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.27 E-value=11 Score=34.07 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=65.4
Q ss_pred CEEEEEECCCeEEEEECCCC--eEEEeecCCCceeEEEecCCCCCEEEEEECC---C---eEEEE-ECCCC----ccce-
Q 009380 296 SKIFTSCYDGLIRLMDAEKE--VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ---G---GLNIW-DVRSR----KSAT- 361 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~~--~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d---g---~i~i~-d~~~~----~~~~- 361 (536)
+.|+.+...+.|.+|++... .....+..-+.|..+.++..| ++|++--.+ . .+++| +.+.. .++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 45655567888999999843 445556667899999999998 788875432 2 55665 22211 1111
Q ss_pred --------------------eEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 009380 362 --------------------EWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSM 400 (536)
Q Consensus 362 --------------------~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~ 400 (536)
.+. .-...+.+|+..|..+++++.+ ++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence 111 1234677888888776655544 468999988764
No 453
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.17 E-value=16 Score=35.89 Aligned_cols=241 Identities=13% Similarity=0.049 Sum_probs=113.3
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEe----ccCCCCEEEEEEecC--CCCEEEEEECC-----
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLF----RTHLGPISGIVTQQY--CLSKIFTSCYD----- 304 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~----~~h~~~V~~l~~~~~--~~~~l~s~s~d----- 304 (536)
.-++|+|.| +|.++++ ...|.|++++... .. ...+..+ .........++++|+ ...+|+.....
T Consensus 3 ~P~~~a~~p--dG~l~v~-e~~G~i~~~~~~g-~~-~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 3 NPRSMAFLP--DGRLLVA-ERSGRIWVVDKDG-SL-KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp SEEEEEEET--TSCEEEE-ETTTEEEEEETTT-EE-CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CceEEEEeC--CCcEEEE-eCCceEEEEeCCC-cC-cceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 357899999 8877665 5599999999332 10 1122222 233456899999995 11344444331
Q ss_pred ----CeEEEEECCCC--e---EEE---ee-c---CCCceeEEEecCCCCCEEEEEECC-------------CeEEEEECC
Q 009380 305 ----GLIRLMDAEKE--V---FDL---VY-S---SEYAVFSLSQQPNNVNTLYFGEGQ-------------GGLNIWDVR 355 (536)
Q Consensus 305 ----g~I~vwd~~~~--~---~~~---~~-~---~~~~i~~l~~~~~~~~~l~~g~~d-------------g~i~i~d~~ 355 (536)
..|.-|....+ . ... .. . ....-..|.|.|++ .+.++.+.. |.|.-.+..
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d 156 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPD 156 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEeccc
Confidence 23444544332 1 111 11 1 23456679999998 444443322 334444432
Q ss_pred CCc-------------cceeEe-ccCCCeEEEEEecCCCCEEEE-EeCCCcEEEEeCCCCCC------------------
Q 009380 356 SRK-------------SATEWL-LHEARINTIDFNPRNPNIMAT-SSTDGTACIWDLRSMAT------------------ 402 (536)
Q Consensus 356 ~~~-------------~~~~~~-~h~~~i~~i~~~p~~~~~l~s-~s~dg~i~iwdl~~~~~------------------ 402 (536)
++ ....+. ++ .....++|+|....++++ .+.++.=.|.-+..+..
T Consensus 157 -G~~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~ 234 (331)
T PF07995_consen 157 -GSIPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG 234 (331)
T ss_dssp -SSB-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred -CcCCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence 21 111121 22 234579999972234333 22333223332333210
Q ss_pred ------CCCCcceeecccCceeEEEEcc-------CCCeEEEEeCCCcEEEEeCCCCCcceEEe-ccCCCCceeeeeEEE
Q 009380 403 ------DKPEPMKVLSHKRAVHSAYFSP-------SGSSLATTSFDDTIGIWSGVNFENTSMIH-HNNQTGRWISSFRAI 468 (536)
Q Consensus 403 ------~~~~~~~~~~~~~~v~~l~~sp-------~g~~l~t~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~ 468 (536)
....+.....+...+..+.|.. .|.+|++.-..+.|....+.....+.... .....+.. ...+.
T Consensus 235 ~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r--~~~v~ 312 (331)
T PF07995_consen 235 DAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGR--PRDVA 312 (331)
T ss_dssp TGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS---EEEEE
T ss_pred cccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCC--ceEEE
Confidence 0011222334556777777764 34456555556677777775443322211 11222212 22366
Q ss_pred EcCCCCEEEEEcCCCcEE
Q 009380 469 WGWDDSCVFIGNMTRTVE 486 (536)
Q Consensus 469 ~s~~g~~l~~gs~dg~I~ 486 (536)
+.|||.++++-..+|.|.
T Consensus 313 ~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 313 QGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EETTSEEEEEE-TTTTEE
T ss_pred EcCCCeEEEEECCCCeEe
Confidence 788888877777777663
No 454
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.89 E-value=1.4 Score=47.10 Aligned_cols=119 Identities=12% Similarity=0.106 Sum_probs=80.7
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCC----------CC------CCCceEEeccCCCCEEEEEEe--cCCC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQ----------QD------EDNGIYLFRTHLGPISGIVTQ--QYCL 295 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~----------~~------~~~~~~~~~~h~~~V~~l~~~--~~~~ 295 (536)
+..|+.|...-..+...|+.+..||.|.+|.+..- .. ...+...+. ....+++++++ ...
T Consensus 100 PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~- 177 (717)
T PF08728_consen 100 PHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS- 177 (717)
T ss_pred CceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-
Confidence 34577777766557789999999999999976420 00 001122222 34578999998 665
Q ss_pred CEEEEEECCCeEEEEECCC--CeEEE--eecCCCceeEEEecCCC--CC---EEEEEECCCeEEEEEC
Q 009380 296 SKIFTSCYDGLIRLMDAEK--EVFDL--VYSSEYAVFSLSQQPNN--VN---TLYFGEGQGGLNIWDV 354 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~--~~~~~--~~~~~~~i~~l~~~~~~--~~---~l~~g~~dg~i~i~d~ 354 (536)
.+||+++....|.||-... .+... ...+...|-+|+|.++. +. .+++++-.|.+.+|++
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7888888888888886543 22111 22356789999997754 22 6778889999999887
No 455
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.63 E-value=15 Score=34.47 Aligned_cols=179 Identities=12% Similarity=0.099 Sum_probs=102.9
Q ss_pred eEEEEEEecCCccEEEEEeCCC--cEEEEECCCCCCCCCceEEecc-CCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 237 ITQMKFLPCSDVRMVVAGSKLG--NITFWNLDSQQDEDNGIYLFRT-HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 237 I~~v~~~p~~~~~~l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
...+.|.. ++.++-+.+.-| .|+.+|+.+ ++......- ..----.++...+ ....-.=.++...+||..
T Consensus 47 TQGL~~~~--~g~LyESTG~yG~S~l~~~d~~t----g~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 47 TQGLEFLD--DGTLYESTGLYGQSSLRKVDLET----GKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp EEEEEEEE--TTEEEEEECSTTEEEEEEEETTT----SSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETT
T ss_pred CccEEecC--CCEEEEeCCCCCcEEEEEEECCC----CcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccc
Confidence 45677766 788888877777 688899887 443332221 1112234444432 333333457889999999
Q ss_pred CCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc-----CCCeEEEEEecCCCCEEEEEeC
Q 009380 314 KEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH-----EARINTIDFNPRNPNIMATSST 388 (536)
Q Consensus 314 ~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h-----~~~i~~i~~~p~~~~~l~s~s~ 388 (536)
+-+....+.....=+.++. ++ ..|+.......|+++|..+.+....+... -..++-+.|.. | .+.|=.=.
T Consensus 119 tl~~~~~~~y~~EGWGLt~--dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~-G-~IyANVW~ 193 (264)
T PF05096_consen 119 TLKKIGTFPYPGEGWGLTS--DG-KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYIN-G-KIYANVWQ 193 (264)
T ss_dssp TTEEEEEEE-SSS--EEEE--CS-SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEET-T-EEEEEETT
T ss_pred cceEEEEEecCCcceEEEc--CC-CEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEc-C-EEEEEeCC
Confidence 8877777776677788884 34 45565666669999999888776665522 23466677763 3 44444444
Q ss_pred CCcEEEEeCCCCCCCCCCcceee----------------cccCceeEEEEccCCCeEEEEe
Q 009380 389 DGTACIWDLRSMATDKPEPMKVL----------------SHKRAVHSAYFSPSGSSLATTS 433 (536)
Q Consensus 389 dg~i~iwdl~~~~~~~~~~~~~~----------------~~~~~v~~l~~sp~g~~l~t~s 433 (536)
...|...|..++. +.... ....-.+.|+|+|....|+..+
T Consensus 194 td~I~~Idp~tG~-----V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 194 TDRIVRIDPETGK-----VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp SSEEEEEETTT-B-----EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCeEEEEeCCCCe-----EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5566666776653 11111 1134678999999766665555
No 456
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.43 E-value=13 Score=33.53 Aligned_cols=139 Identities=13% Similarity=0.159 Sum_probs=82.5
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC---C---eEEEE-ECCCC------
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---G---LIRLM-DAEKE------ 315 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---g---~I~vw-d~~~~------ 315 (536)
+.|+.+...+.|.+|++.... ......|..- +.|..+.++..| ++|+|--.+ . .+|+| +++..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~--~~~~~~F~Tv-~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEE--CPLLCTFSTV-GRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCC--CceeEEEcch-hheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 455444566789999998432 5666677655 789999999998 999987443 2 56665 22211
Q ss_pred eEEEee---------------------cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ce-----eE-----
Q 009380 316 VFDLVY---------------------SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-AT-----EW----- 363 (536)
Q Consensus 316 ~~~~~~---------------------~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~-----~~----- 363 (536)
....+. ....++.+++..|..++ |++|+.+ .+.+|.+..... .. .|
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~~~-~l~lf~l~~~~~~~~~~~~lDFe~~l~ 182 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGCGN-KLVLFTLKYQTIQSEKFSFLDFERSLI 182 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEcCC-EEEEEEEEEEEEecccccEEechhhhh
Confidence 111111 22346778888887655 4455554 888887764322 11 11
Q ss_pred eccC-CCeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 009380 364 LLHE-ARINTIDFNPRNPNIMATSSTDGTACIWDL 397 (536)
Q Consensus 364 ~~h~-~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl 397 (536)
..|. -....+++.. .++|..+ +-.++++.+
T Consensus 183 ~~~~~~~p~~v~ic~---~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 183 DHIDNFKPTQVAICE---GYIAVMS-DLEVLVLKL 213 (215)
T ss_pred heecCceEEEEEEEe---eEEEEec-CCEEEEEEE
Confidence 1122 2256677763 4777776 446666654
No 457
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.01 E-value=9.9 Score=31.46 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=70.2
Q ss_pred EEEEecCCccEEEEEeCCCcEEEEECCCCCC----CCCceEEeccCCCCEEEEEEec----CCCCEEEEEECCCeEEEEE
Q 009380 240 MKFLPCSDVRMVVAGSKLGNITFWNLDSQQD----EDNGIYLFRTHLGPISGIVTQQ----YCLSKIFTSCYDGLIRLMD 311 (536)
Q Consensus 240 v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~----~~~~~~~~~~h~~~V~~l~~~~----~~~~~l~s~s~dg~I~vwd 311 (536)
-.|.. ...-|++++.-|.|.|++...... ....+ .+..-...|++|+-.+ ++.+.|+.|+ ...|..||
T Consensus 4 GkfDG--~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i-~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 4 GKFDG--VHPCLACATTGGKVFIHNPHERGQRTGRQDSDI-SFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred EEeCC--CceeEEEEecCCEEEEECCCccccccccccCce-eEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 34544 456788888899999998765321 01222 2333456788887554 2335666666 56689999
Q ss_pred CCCCeEEEeecCCCceeEEEecCCC--CCEEEEEECCCeEEEEECCCCcc
Q 009380 312 AEKEVFDLVYSSEYAVFSLSQQPNN--VNTLYFGEGQGGLNIWDVRSRKS 359 (536)
Q Consensus 312 ~~~~~~~~~~~~~~~i~~l~~~~~~--~~~l~~g~~dg~i~i~d~~~~~~ 359 (536)
+....-.........|.++.+-.-+ +.-++..+.+..|.-||..-.+.
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 9887655444555677777663211 12344444456888888654443
No 458
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.94 E-value=9.3 Score=38.23 Aligned_cols=139 Identities=14% Similarity=0.167 Sum_probs=85.5
Q ss_pred CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-----CCCceeEE
Q 009380 256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-----SEYAVFSL 330 (536)
Q Consensus 256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-----~~~~i~~l 330 (536)
..|.+.=|-+..... ...+..-....++|.+|.|++|+ +.|+.--.|.+|.+++........... ....|...
T Consensus 41 rSggatgvvvkgpnd-DVpiSfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF 118 (657)
T KOG2377|consen 41 RSGGATGVVVKGPND-DVPISFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGF 118 (657)
T ss_pred ecCCeeEEEEeCCCC-CCCceeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEE
Confidence 345566666654331 22333333456799999999998 999999999999999985443322221 23458899
Q ss_pred EecCCCCCEEEEEECCCeEEEEECCCC-ccceeEeccCCCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCC
Q 009380 331 SQQPNNVNTLYFGEGQGGLNIWDVRSR-KSATEWLLHEARINTIDFNPRNPNIMATSS-TDGTACIWDLRS 399 (536)
Q Consensus 331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~ 399 (536)
+|..+ .-++.-+..| +-+|-.... ..++..+.|.-.|+-..|+++-.-.|++.+ ..+++.=+-+++
T Consensus 119 ~W~~s--~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 119 CWTSS--TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred EEecC--eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 99876 3455555553 555554432 335556678888888899986643344433 333333333333
No 459
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.87 E-value=0.042 Score=54.50 Aligned_cols=143 Identities=13% Similarity=0.110 Sum_probs=98.0
Q ss_pred EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380 238 TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF 317 (536)
Q Consensus 238 ~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~ 317 (536)
....|-| .+.-++.++.+..|..||-.. +..... .-++....++|..+++..++.+-..+.+.+||+.+...
T Consensus 38 i~~~w~~--e~~nlavaca~tiv~~YD~ag-----q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 38 IIHRWRP--EGHNLAVACANTIVIYYDKAG-----QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred ceeeEec--CCCceehhhhhhHHHhhhhhc-----ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 3456777 554577777788888888652 222222 23455667889888866777778889999999987643
Q ss_pred EEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380 318 DLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGT 391 (536)
Q Consensus 318 ~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~ 391 (536)
..+. +....-.-+.|++.. ..++.|...|.+.|++..+.+.+-....|...+.+++|.+.+ +.+.++.|..
T Consensus 110 qqLE~gg~~s~sll~wsKg~-~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd--~vil~dcd~~ 181 (615)
T KOG2247|consen 110 QQLESGGTSSKSLLAWSKGT-PELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED--YVILCDCDNT 181 (615)
T ss_pred HHHhccCcchHHHHhhccCC-ccccccccccceEEEeccchhhhhhhcccccceeEEEecccc--eeeecCcHHH
Confidence 3222 222222226788776 577888899999999988877665555599999999999965 5666655544
No 460
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.83 E-value=24 Score=39.13 Aligned_cols=67 Identities=10% Similarity=0.150 Sum_probs=41.5
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceE-----Eec--cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIY-----LFR--THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE 315 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~-----~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~ 315 (536)
.|+.|..|+.+|.+.+|.+........... .+. -+..+|..+...+.- ..++.- .|+.|.++++.+-
T Consensus 25 ~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~-~~ll~l-~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 25 YGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASL-ELLLIL-SDSQIAVHKLPEL 98 (877)
T ss_pred hCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchh-cchhee-cCCcceeeecCcc
Confidence 568999999999999999986422111100 011 124667777666654 444444 4777888887654
No 461
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.50 E-value=16 Score=33.27 Aligned_cols=197 Identities=11% Similarity=0.087 Sum_probs=104.4
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEec-CCCCCEEEEEECC-CeEEEEECCC--CccceeEe-----cc
Q 009380 296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQ-PNNVNTLYFGEGQ-GGLNIWDVRS--RKSATEWL-----LH 366 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~-~~~~~~l~~g~~d-g~i~i~d~~~--~~~~~~~~-----~h 366 (536)
.+++.--..|.|.-||+.+.+.....-...+..++.+- .+++..++++... -.|.-||... -....++. ..
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k 107 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK 107 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence 56666666777888998876543332222223333332 2233344444433 2344566332 22222211 11
Q ss_pred CCCeEEEEEecCCCCEEEEEeC----------CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEE-EeCC
Q 009380 367 EARINTIDFNPRNPNIMATSST----------DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLAT-TSFD 435 (536)
Q Consensus 367 ~~~i~~i~~~p~~~~~l~s~s~----------dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t-~s~d 435 (536)
....+.-..+|+| +++ .|.. .|.++.|-... ++..+...-.--+.++|+.+.+.+.. -+.+
T Consensus 108 knR~NDgkvdP~G-ryy-~GtMad~~~~le~~~g~Ly~~~~~h------~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln 179 (310)
T KOG4499|consen 108 KNRLNDGKVDPDG-RYY-GGTMADFGDDLEPIGGELYSWLAGH------QVELIWNCVGISNGLAWDSDAKKFYYIDSLN 179 (310)
T ss_pred hcccccCccCCCC-cee-eeeeccccccccccccEEEEeccCC------CceeeehhccCCccccccccCcEEEEEccCc
Confidence 3445666778887 443 2321 14455554432 22233333344467889887665544 4566
Q ss_pred CcEEEEe--CCCCC-----cceEEec------cCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC
Q 009380 436 DTIGIWS--GVNFE-----NTSMIHH------NNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP 502 (536)
Q Consensus 436 g~I~iwd--~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~ 502 (536)
-.|.-|| ..++. .+..++. ..+.+ .+...+|.+.++.-..++|..+|..+|+.+.++.-+
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDG-------m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDG-------MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP 252 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCc-------ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC
Confidence 6787787 44432 2222222 11222 222457777777777789999999999999998876
Q ss_pred ceeee
Q 009380 503 YISAI 507 (536)
Q Consensus 503 ~~~~~ 507 (536)
.....
T Consensus 253 t~qit 257 (310)
T KOG4499|consen 253 TPQIT 257 (310)
T ss_pred CCceE
Confidence 54444
No 462
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.48 E-value=7.1 Score=38.95 Aligned_cols=193 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred ecCCccEEEEEeCCCcEEEEECC---------------------------------------------------------
Q 009380 244 PCSDVRMVVAGSKLGNITFWNLD--------------------------------------------------------- 266 (536)
Q Consensus 244 p~~~~~~l~tg~~dg~v~iwd~~--------------------------------------------------------- 266 (536)
| ...+++.|..||.+.+...+
T Consensus 125 ~--gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L 202 (733)
T COG4590 125 P--GQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPGLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQIL 202 (733)
T ss_pred C--CCceEEEeccCCeEEEEeccccccCCCCCccCCCCCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhh
Q ss_pred --CCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCcee--------EEEecCCC
Q 009380 267 --SQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF--------SLSQQPNN 336 (536)
Q Consensus 267 --~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~--------~l~~~~~~ 336 (536)
+.....+.+..+..--..|..+-..|++ +.|+.-+. ..+.++++.+.......-.+.... .+.....+
T Consensus 203 ~g~~t~q~e~i~~L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg 280 (733)
T COG4590 203 RGDRTTQQEIIRLLSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGG 280 (733)
T ss_pred hcccCchhhhhhhcCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCc
Q ss_pred CCEEEEEECCCeEEEE-ECCCCcc-----ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee
Q 009380 337 VNTLYFGEGQGGLNIW-DVRSRKS-----ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV 410 (536)
Q Consensus 337 ~~~l~~g~~dg~i~i~-d~~~~~~-----~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~ 410 (536)
..+.++..||-|.-| |.+.+.. ++.++.....+..+.-.... +-|++-+..|++.++.-.. ...+-.
T Consensus 281 -~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~-----~~~lL~ 353 (733)
T COG4590 281 -FSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTS-----EKLLLF 353 (733)
T ss_pred -eeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccccc-ceEEEEcCCCceeeeeccc-----Ccceeh
Q ss_pred ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc
Q 009380 411 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN 448 (536)
Q Consensus 411 ~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~ 448 (536)
...-..+..+++||++.++++-...+ |+++.+.+..+
T Consensus 354 ~~~~~~~~~~~~Sp~~~~Ll~e~~gk-i~~~~l~Nr~P 390 (733)
T COG4590 354 ERAYQAPQLVAMSPNQAYLLSEDQGK-IRLAQLENRNP 390 (733)
T ss_pred hhhhcCcceeeeCcccchheeecCCc-eEEEEecCCCC
No 463
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.26 E-value=2.8 Score=38.48 Aligned_cols=63 Identities=17% Similarity=0.078 Sum_probs=41.4
Q ss_pred EecCCCCEEEEEECCCeEEEEECCCCeEEEee---------------cCCCceeEEEecCCCCCEEEEEECCCeEEEEEC
Q 009380 290 TQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY---------------SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV 354 (536)
Q Consensus 290 ~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~---------------~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~ 354 (536)
+...+ ++|++.+.+|.+++||+.+++..... .....|..+.+..+| .-++ .-.+|..+.||.
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV-~lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIV-TLSNGDSYSYSP 94 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEE-EEeCCCEEEecc
Confidence 33445 88999999999999999987653221 234566777777665 3333 334566777765
Q ss_pred C
Q 009380 355 R 355 (536)
Q Consensus 355 ~ 355 (536)
.
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 4
No 464
>PLN02193 nitrile-specifier protein
Probab=89.13 E-value=31 Score=35.92 Aligned_cols=190 Identities=9% Similarity=0.055 Sum_probs=88.5
Q ss_pred CEEEEEECC-------CeEEEEECCCCeEEEeecCC-Cc----ee-EEEecCCCCCEEEEEECC-----CeEEEEECCCC
Q 009380 296 SKIFTSCYD-------GLIRLMDAEKEVFDLVYSSE-YA----VF-SLSQQPNNVNTLYFGEGQ-----GGLNIWDVRSR 357 (536)
Q Consensus 296 ~~l~s~s~d-------g~I~vwd~~~~~~~~~~~~~-~~----i~-~l~~~~~~~~~l~~g~~d-----g~i~i~d~~~~ 357 (536)
.+++.|+.+ ..+.+||+.+.......... .+ .. +++.. ++ .+++.|+.+ ..+..||+.+.
T Consensus 177 ~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~-~~-~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 177 KIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI-GS-TLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred EEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE-CC-EEEEECCCCCCCCCccEEEEECCCC
Confidence 555666643 34778898887665432111 11 11 12222 22 566667654 35888998875
Q ss_pred ccce--eEe--ccCCCeEEEEEecCCCCEEEEEeCCC-----cEEEEeCCCCCCCCCCcc-eeecccCceeEEEEccCCC
Q 009380 358 KSAT--EWL--LHEARINTIDFNPRNPNIMATSSTDG-----TACIWDLRSMATDKPEPM-KVLSHKRAVHSAYFSPSGS 427 (536)
Q Consensus 358 ~~~~--~~~--~h~~~i~~i~~~p~~~~~l~s~s~dg-----~i~iwdl~~~~~~~~~~~-~~~~~~~~v~~l~~sp~g~ 427 (536)
+-.. .+. .....-.++... +.++++.|+.++ .+..||+.+.+-...... ...........+. -+++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~--~~gk 330 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV--VQGK 330 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE--ECCc
Confidence 4321 110 011111223222 335777777543 466788766421000000 0001111111222 2567
Q ss_pred eEEEEeCC----CcEEEEeCCCCCcceEEec-cCCCCceeeeeEEEEcCCCCEEEEEcCC--------------CcEEEE
Q 009380 428 SLATTSFD----DTIGIWSGVNFENTSMIHH-NNQTGRWISSFRAIWGWDDSCVFIGNMT--------------RTVEVI 488 (536)
Q Consensus 428 ~l~t~s~d----g~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~g~~l~~gs~d--------------g~I~v~ 488 (536)
+++.++.+ ..+.+||+.+.+-...-.. ..+..+.... + ..-++++++.|+.+ ..+.+|
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~--~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFA--S-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeE--E-EEECCEEEEECCccCCccccccCccceeccEEEE
Confidence 77777755 4588999876543222111 0111111111 1 12255677777743 247888
Q ss_pred cCCccc
Q 009380 489 SPAQRR 494 (536)
Q Consensus 489 d~~~~~ 494 (536)
|..+.+
T Consensus 408 D~~t~~ 413 (470)
T PLN02193 408 DTETLQ 413 (470)
T ss_pred EcCcCE
Confidence 887653
No 465
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.08 E-value=3.6 Score=40.99 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=76.7
Q ss_pred cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380 233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA 312 (536)
Q Consensus 233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~ 312 (536)
-.|+|.++.|++ |.+.||+--.+.+|.+++....+........-+..+..|....|+.. .-++..+..| +-+|-.
T Consensus 65 d~G~I~SIkFSl--DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~e~y~v 139 (657)
T KOG2377|consen 65 DKGEIKSIKFSL--DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS--TEIAFITDQG-IEFYQV 139 (657)
T ss_pred CCCceeEEEecc--CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC--eeEEEEecCC-eEEEEE
Confidence 367999999999 99999999999999999986432212223333444566899999876 4555555444 555554
Q ss_pred C--CCeEEEeecCCCceeEEEecCCCCCEEEEE-E-CCCeEEEEECCC
Q 009380 313 E--KEVFDLVYSSEYAVFSLSQQPNNVNTLYFG-E-GQGGLNIWDVRS 356 (536)
Q Consensus 313 ~--~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g-~-~dg~i~i~d~~~ 356 (536)
. ......+..+...|.-..|.++. +.++.+ + ....+.=+.+++
T Consensus 140 ~pekrslRlVks~~~nvnWy~yc~et-~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 140 LPEKRSLRLVKSHNLNVNWYMYCPET-AVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred chhhhhhhhhhhcccCccEEEEcccc-ceEeeeccccccccccEEEee
Confidence 3 34445555677788888888876 443333 3 233444444443
No 466
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.07 E-value=0.077 Score=52.71 Aligned_cols=145 Identities=10% Similarity=0.135 Sum_probs=98.7
Q ss_pred CEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE
Q 009380 284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW 363 (536)
Q Consensus 284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~ 363 (536)
.-....|.+.+ .-++.++.+..+..||-....... ....+....++|..+++..++.+-..+.+.+||+.+.... ++
T Consensus 36 ~pi~~~w~~e~-~nlavaca~tiv~~YD~agq~~le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qL 112 (615)
T KOG2247|consen 36 GPIIHRWRPEG-HNLAVACANTIVIYYDKAGQVILE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QL 112 (615)
T ss_pred ccceeeEecCC-CceehhhhhhHHHhhhhhcceecc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HH
Confidence 33456788887 457777778888888866544332 2344667788998888777788888899999999864321 11
Q ss_pred e---ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEE
Q 009380 364 L---LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIG 439 (536)
Q Consensus 364 ~---~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~ 439 (536)
. .|.... +.|++.. ..++.+...|.+.|+...+.. .....-.|...++++++.+.+. .+.++.|..+.
T Consensus 113 E~gg~~s~sl--l~wsKg~-~el~ig~~~gn~viynhgtsR----~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~ 183 (615)
T KOG2247|consen 113 ESGGTSSKSL--LAWSKGT-PELVIGNNAGNIVIYNHGTSR----RIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLS 183 (615)
T ss_pred hccCcchHHH--HhhccCC-ccccccccccceEEEeccchh----hhhhhcccccceeEEEecccce-eeecCcHHHHH
Confidence 1 122222 6788844 577888888999999987732 3333334999999999999775 44555554443
No 467
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.64 E-value=34 Score=38.15 Aligned_cols=174 Identities=9% Similarity=0.080 Sum_probs=92.9
Q ss_pred eEEEEECCCCeEEEeecCC-----CceeEEEecCCCCC-EEEEEEC-----------CCeEEEEECCC-CccceeEe--c
Q 009380 306 LIRLMDAEKEVFDLVYSSE-----YAVFSLSQQPNNVN-TLYFGEG-----------QGGLNIWDVRS-RKSATEWL--L 365 (536)
Q Consensus 306 ~I~vwd~~~~~~~~~~~~~-----~~i~~l~~~~~~~~-~l~~g~~-----------dg~i~i~d~~~-~~~~~~~~--~ 365 (536)
.|++.|..+++......+. -.+..+.|+..+.. ++++|.. +|.++.|++-. ++.+.-+. .
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 4778888777665554433 24566666655433 3444332 34466666543 33222221 1
Q ss_pred cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 366 h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~ 445 (536)
-.+.|. +.+|-.+ ++++|- ...+++||+.+.+... ..........|+++.+. +..+++|..-..+.++-.+.
T Consensus 934 ~~~~v~--Ai~~f~~-~~Lagv-G~~l~~YdlG~K~lLR--k~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen 934 IPGPVG--AICPFQG-RVLAGV-GRFLRLYDLGKKKLLR--KCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred CCccce--EEeccCC-EEEEec-ccEEEEeeCChHHHHh--hhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEec
Confidence 123343 4455454 455443 4689999997642111 01111135567777774 66788887666666655544
Q ss_pred CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380 446 FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
..............+|++.+. --|-..++.+..=|.+.+..+
T Consensus 1006 ~~n~l~~fadD~~pR~Vt~~~---~lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1006 EDNQLIVFADDPVPRHVTALE---LLDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CCCeEEEEeCCCccceeeEEE---EecCCceeeccccCcEEEEEC
Confidence 433333334455666776533 234456777766677766654
No 468
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.58 E-value=9.7 Score=36.31 Aligned_cols=115 Identities=13% Similarity=0.056 Sum_probs=67.0
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE------CCCeEEEEECCCCeEEEeecC-----CCc
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC------YDGLIRLMDAEKEVFDLVYSS-----EYA 326 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s------~dg~I~vwd~~~~~~~~~~~~-----~~~ 326 (536)
..|++||..... -...-.+-.+.|+++.|..+. .+++.|. ....+..||+.+.....+... .++
T Consensus 16 ~~lC~yd~~~~q----W~~~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNSQ----WSSPGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGP 90 (281)
T ss_pred CEEEEEECCCCE----eecCCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCc
Confidence 468999987632 111222345789999998654 6666664 356788999998877655542 378
Q ss_pred eeEEEecCCCCC-EEEEEE-CC--CeEEEEECCCCcccee-EeccCCCeEEEEEec
Q 009380 327 VFSLSQQPNNVN-TLYFGE-GQ--GGLNIWDVRSRKSATE-WLLHEARINTIDFNP 377 (536)
Q Consensus 327 i~~l~~~~~~~~-~l~~g~-~d--g~i~i~d~~~~~~~~~-~~~h~~~i~~i~~~p 377 (536)
|..+.+...+.. +.+.|. .+ ..|..||=.+-..+.. .......|..+.+-|
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred EEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 888887544433 444443 22 3466666443333322 222234555555544
No 469
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.27 E-value=27 Score=34.24 Aligned_cols=146 Identities=10% Similarity=0.125 Sum_probs=82.8
Q ss_pred CCCEEEEEEecCCCCEEEEEECCCe------EEEEECCC--C---eE-----EEeecCCC--------ceeEEEecCCCC
Q 009380 282 LGPISGIVTQQYCLSKIFTSCYDGL------IRLMDAEK--E---VF-----DLVYSSEY--------AVFSLSQQPNNV 337 (536)
Q Consensus 282 ~~~V~~l~~~~~~~~~l~s~s~dg~------I~vwd~~~--~---~~-----~~~~~~~~--------~i~~l~~~~~~~ 337 (536)
-+.++.|.+.+++ ..+++.+.+|. +..+++.. + .. ..+....+ ..-+|++.+++
T Consensus 19 ~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g- 96 (326)
T PF13449_consen 19 FGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG- 96 (326)
T ss_pred cCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-
Confidence 3567889998766 67888888887 66666543 1 11 11111111 44578885555
Q ss_pred CEEEEEECC------CeEEEEECCCCccceeEe---------------ccCCCeEEEEEecCCCCEEEEEeC-----CC-
Q 009380 338 NTLYFGEGQ------GGLNIWDVRSRKSATEWL---------------LHEARINTIDFNPRNPNIMATSST-----DG- 390 (536)
Q Consensus 338 ~~l~~g~~d------g~i~i~d~~~~~~~~~~~---------------~h~~~i~~i~~~p~~~~~l~s~s~-----dg- 390 (536)
.++++.-.+ ..|..++.. |+.+..+. ......-+|+++|+| +.|+++.+ |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLFAAMESPLKQDGP 174 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCC-CEEEEEECccccCCCc
Confidence 566665556 688888866 65544431 133567899999988 44444433 22
Q ss_pred -c-------EEEEeCCCCC---CCCCCcceeec-----ccCceeEEEEccCCCeEEE
Q 009380 391 -T-------ACIWDLRSMA---TDKPEPMKVLS-----HKRAVHSAYFSPSGSSLAT 431 (536)
Q Consensus 391 -~-------i~iwdl~~~~---~~~~~~~~~~~-----~~~~v~~l~~sp~g~~l~t 431 (536)
. ++|+...... ........+.. ....|..+.+-+++++|+.
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 4554443221 00111111111 3567888888888885554
No 470
>PLN02153 epithiospecifier protein
Probab=88.08 E-value=29 Score=34.27 Aligned_cols=101 Identities=7% Similarity=0.058 Sum_probs=49.5
Q ss_pred CEEEEEECC-------CeEEEEECCCCeEEEeecCCC--c--e--eEEEecCCCCCEEEEEECC-----CeEEEEECCCC
Q 009380 296 SKIFTSCYD-------GLIRLMDAEKEVFDLVYSSEY--A--V--FSLSQQPNNVNTLYFGEGQ-----GGLNIWDVRSR 357 (536)
Q Consensus 296 ~~l~s~s~d-------g~I~vwd~~~~~~~~~~~~~~--~--i--~~l~~~~~~~~~l~~g~~d-----g~i~i~d~~~~ 357 (536)
.+++.|+.+ ..+.+||+.+........... . . .+++.. ++ .+++.|+.+ ..+.+||+.+.
T Consensus 34 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 34 KLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV-GT-KLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred EEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE-CC-EEEEECCCCCCCccCcEEEEECCCC
Confidence 455555542 357788888776654332110 0 0 111222 22 566777653 35788898765
Q ss_pred ccc--eeEe----ccCCCeEEEEEecCCCCEEEEEeCC-----------CcEEEEeCCCC
Q 009380 358 KSA--TEWL----LHEARINTIDFNPRNPNIMATSSTD-----------GTACIWDLRSM 400 (536)
Q Consensus 358 ~~~--~~~~----~h~~~i~~i~~~p~~~~~l~s~s~d-----------g~i~iwdl~~~ 400 (536)
+-. ..+. .....-.+++... + .+++.|+.+ ..|.+||+.+.
T Consensus 112 ~W~~~~~~~~~~~p~~R~~~~~~~~~-~-~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~ 169 (341)
T PLN02153 112 EWTFLTKLDEEGGPEARTFHSMASDE-N-HVYVFGGVSKGGLMKTPERFRTIEAYNIADG 169 (341)
T ss_pred EEEEeccCCCCCCCCCceeeEEEEEC-C-EEEEECCccCCCccCCCcccceEEEEECCCC
Confidence 322 1110 0011112233332 3 567777753 24778888764
No 471
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.79 E-value=29 Score=33.95 Aligned_cols=104 Identities=6% Similarity=-0.020 Sum_probs=50.0
Q ss_pred CEEEEEECC-----CeEEEEECCCCccc---eeEeccCCC--eEEEEEecCCCCEEEEEeC-----CCcEEEEeCCCCCC
Q 009380 338 NTLYFGEGQ-----GGLNIWDVRSRKSA---TEWLLHEAR--INTIDFNPRNPNIMATSST-----DGTACIWDLRSMAT 402 (536)
Q Consensus 338 ~~l~~g~~d-----g~i~i~d~~~~~~~---~~~~~h~~~--i~~i~~~p~~~~~l~s~s~-----dg~i~iwdl~~~~~ 402 (536)
.++++|+.+ ..+..||+.+.+.. ..+..-..+ -.+++... + .+.+.|+. ...+..||+.+.+-
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~-~-~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKD-G-TLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC-C-EEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 566667654 35777787765431 111111111 12233332 3 56677764 23588889886431
Q ss_pred CCCCcceeecccCceeEEEEccCCCeEEEEeCCCc----EEEEeCCCC
Q 009380 403 DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDT----IGIWSGVNF 446 (536)
Q Consensus 403 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~----I~iwd~~~~ 446 (536)
.. ...+. ........+...++++++.|+.++. +.+||..+.
T Consensus 152 ~~--~~~~p-~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FE--LPDFP-GEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eE--CCCCC-CCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 11 11111 1111122222335777777776542 567887654
No 472
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=87.59 E-value=51 Score=36.59 Aligned_cols=179 Identities=10% Similarity=0.075 Sum_probs=0.0
Q ss_pred ccceEEecccccCccccccc---------cCCceEEEEEEecCCccEEEEEeCC---CcEEEEECCCCCC------CC--
Q 009380 213 VGSCVDIGSLTLKPENIARI---------MPGRITQMKFLPCSDVRMVVAGSKL---GNITFWNLDSQQD------ED-- 272 (536)
Q Consensus 213 ~dg~v~lw~~~~~~~~~~~~---------~~~~I~~v~~~p~~~~~~l~tg~~d---g~v~iwd~~~~~~------~~-- 272 (536)
..|.+.+|-...+....... -.+.|+..++.+..+|..+++++.+ +.|++|.+.-.-. ..
T Consensus 70 ~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~~d~q~ 149 (753)
T PF11635_consen 70 RNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQIDPQK 149 (753)
T ss_pred cCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCccCCCCc
Q ss_pred -CceEEeccCCC--------------------CEEEEEEec------CCCCEEEEEECCC----eEEEEECCCCeE----
Q 009380 273 -NGIYLFRTHLG--------------------PISGIVTQQ------YCLSKIFTSCYDG----LIRLMDAEKEVF---- 317 (536)
Q Consensus 273 -~~~~~~~~h~~--------------------~V~~l~~~~------~~~~~l~s~s~dg----~I~vwd~~~~~~---- 317 (536)
..+.....+.. .++.+.|-+ ..+..|++.+..+ .|..|.+.....
T Consensus 150 ~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~ 229 (753)
T PF11635_consen 150 LPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHP 229 (753)
T ss_pred CCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccch
Q ss_pred -----------------------EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE----ec-----
Q 009380 318 -----------------------DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW----LL----- 365 (536)
Q Consensus 318 -----------------------~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~----~~----- 365 (536)
.........|.+++...-+ ..++....||+|.++|..+.+.+... ..
T Consensus 230 ~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~ 308 (753)
T PF11635_consen 230 AFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVT 308 (753)
T ss_pred hhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhcccccccCCccccc
Q ss_pred ----------cCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 009380 366 ----------HEARINTIDFNPRNPNIMATSSTDGTAC 393 (536)
Q Consensus 366 ----------h~~~i~~i~~~p~~~~~l~s~s~dg~i~ 393 (536)
+...+..++|+|.+ ..++.-..+|.+.
T Consensus 309 s~~~~Gf~fp~~~~~~~vafSPt~-c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 309 SLFQAGFHFPCIQPPLHVAFSPTM-CSLVQIDEDGKTK 345 (753)
T ss_pred cccccccccccCCCCceEEECccc-ceEEEEecCCCce
No 473
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.54 E-value=33 Score=34.33 Aligned_cols=196 Identities=14% Similarity=0.107 Sum_probs=101.8
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEeccC--CCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCC-
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH--LGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEY- 325 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~- 325 (536)
..+.++..+|.|.-.|..+. ..+.....- ...+.+-.+..+| .|+.++.+|.+..+|..++.....+....
T Consensus 69 g~v~~~~~~G~i~A~d~~~g----~~~W~~~~~~~~~~~~~~~~~~~G--~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTG----LVKWSYPLLGAVAQLSGPILGSDG--KIYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred CeEEEecCCCcEEEEeCCCC----cEEecccCcCcceeccCceEEeCC--eEEEecccceEEEEECCCCcEEEEEecCCC
Confidence 34555577777777777663 222211111 1122222233354 58899999999999998887776665544
Q ss_pred -ceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC---CCeEEEEEecCCCCEEEEEeC--CCcEEEEeCCC
Q 009380 326 -AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE---ARINTIDFNPRNPNIMATSST--DGTACIWDLRS 399 (536)
Q Consensus 326 -~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~---~~i~~i~~~p~~~~~l~s~s~--dg~i~iwdl~~ 399 (536)
.+..-....+ ..++.++.+|.+...|..++.......... ..+..--... . ..+..+.. ++.+.-.|..+
T Consensus 143 ~~~~~~~v~~~--~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~-~-~~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 143 PYYASPPVVGD--GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIA-S-GTVYVGSDGYDGILYALNAED 218 (370)
T ss_pred eEEecCcEEcC--cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceee-c-ceEEEecCCCcceEEEEEccC
Confidence 1222222223 356666678999999998888765544211 1111111112 2 24444544 55566667766
Q ss_pred CCCCCCCcc-eeecccCc--eeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCcceEEec
Q 009380 400 MATDKPEPM-KVLSHKRA--VHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTSMIHH 454 (536)
Q Consensus 400 ~~~~~~~~~-~~~~~~~~--v~~l~~sp--~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~ 454 (536)
+........ ...+.... ...+..-+ .+..++.++.++.+...|..+++.+..+..
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 542211100 01111100 00111111 122346667778888888888888777754
No 474
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=87.31 E-value=32 Score=33.98 Aligned_cols=12 Identities=8% Similarity=0.047 Sum_probs=8.3
Q ss_pred CcEEEEeCCCCC
Q 009380 390 GTACIWDLRSMA 401 (536)
Q Consensus 390 g~i~iwdl~~~~ 401 (536)
..+.+||..+.+
T Consensus 168 ~~v~~YDp~t~~ 179 (346)
T TIGR03547 168 KNVLSYDPSTNQ 179 (346)
T ss_pred ceEEEEECCCCc
Confidence 457888887643
No 475
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.11 E-value=3.7 Score=37.70 Aligned_cols=63 Identities=17% Similarity=0.281 Sum_probs=45.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCC--cceee--------cccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380 381 NIMATSSTDGTACIWDLRSMATDKPE--PMKVL--------SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 381 ~~l~s~s~dg~i~iwdl~~~~~~~~~--~~~~~--------~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~ 444 (536)
+++++-+.+|.+++||+.+.+..... +..+. .....|..+.++.+|.-|++-+ +|..+.|+..
T Consensus 23 ~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 23 SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 67888889999999999987632211 11111 3557788999998898777665 5788999864
No 476
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=86.32 E-value=35 Score=35.54 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=55.4
Q ss_pred EEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCc----eeEEEecCCCCCEEEEEE--------------CCCeE
Q 009380 288 IVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYA----VFSLSQQPNNVNTLYFGE--------------GQGGL 349 (536)
Q Consensus 288 l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~----i~~l~~~~~~~~~l~~g~--------------~dg~i 349 (536)
+...++| .+++..+ ..+..+|+...... .+..... -..+...|+| ++|+.+. .| .|
T Consensus 153 ~~~l~nG-~ll~~~~--~~~~e~D~~G~v~~-~~~l~~~~~~~HHD~~~l~nG-n~L~l~~~~~~~~~~~~~~~~~D-~I 226 (477)
T PF05935_consen 153 FKQLPNG-NLLIGSG--NRLYEIDLLGKVIW-EYDLPGGYYDFHHDIDELPNG-NLLILASETKYVDEDKDVDTVED-VI 226 (477)
T ss_dssp EEE-TTS--EEEEEB--TEEEEE-TT--EEE-EEE--TTEE-B-S-EEE-TTS--EEEEEEETTEE-TS-EE---S--EE
T ss_pred eeEcCCC-CEEEecC--CceEEEcCCCCEEE-eeecCCcccccccccEECCCC-CEEEEEeecccccCCCCccEecC-EE
Confidence 5667776 5555444 77888888755332 2322221 2456677887 7777776 23 46
Q ss_pred EEEECCCCccceeEec--cC-------------------------CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 009380 350 NIWDVRSRKSATEWLL--HE-------------------------ARINTIDFNPRNPNIMATSSTDGTACIWDLRSM 400 (536)
Q Consensus 350 ~i~d~~~~~~~~~~~~--h~-------------------------~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~ 400 (536)
..+| .+|+.+..+.. |- -.+++|.+.+.+..+++++-.-..|...|.+++
T Consensus 227 vevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 227 VEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp EEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred EEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence 6667 67766555431 10 137899999955456666655557888886664
No 477
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.01 E-value=11 Score=42.80 Aligned_cols=152 Identities=16% Similarity=0.204 Sum_probs=87.6
Q ss_pred eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEE--------ecCCCCEEEEEECCCeEE
Q 009380 237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVT--------QQYCLSKIFTSCYDGLIR 308 (536)
Q Consensus 237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~--------~~~~~~~l~s~s~dg~I~ 308 (536)
-+.+-+.| .-.... -+.|+.+.+|+.++ ......+.+-...|..+.. .|.= ++++..+.--.|.
T Consensus 81 ~~~mGiFp--eI~RaW-iTiDn~L~lWny~~----~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I-qhlLvvaT~~ei~ 152 (1311)
T KOG1900|consen 81 KTDMGIFP--EIGRAW-ITIDNNLFLWNYES----DNELAEYDGLSHTILKVGLVKPKPGVFVPEI-QHLLVVATPVEIV 152 (1311)
T ss_pred eeeeccch--hhcceE-EEeCCeEEEEEcCC----CCccccccchhhhheeeeeecCCCCcchhhh-heeEEecccceEE
Confidence 34455556 222222 23577999999998 4455556665666666653 2332 3444444455566
Q ss_pred EEECCC----CeEEE------eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC--CC---c-c-------------
Q 009380 309 LMDAEK----EVFDL------VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR--SR---K-S------------- 359 (536)
Q Consensus 309 vwd~~~----~~~~~------~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~--~~---~-~------------- 359 (536)
++-+.- +.... +-.....|.|+....+| + ++.++.||.|+-+-.. .+ + +
T Consensus 153 ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nG-R-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~l 230 (1311)
T KOG1900|consen 153 ILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENG-R-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSL 230 (1311)
T ss_pred EEEEEeccccCcccccccceeeecCCceEEEEEeccCC-c-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHh
Confidence 665432 11111 11234578888866666 4 4555666655432221 11 1 0
Q ss_pred ---ceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380 360 ---ATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS 399 (536)
Q Consensus 360 ---~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~ 399 (536)
+..+. .+.++|..|...... +++.+-+..|+|.+||+..
T Consensus 231 vPs~~~~~~~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 231 VPSLLSVPGSSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhhhcCCCCCCCcceeeEecccc-ceeeeeccCceEEEEEccC
Confidence 11122 467789999998754 7999999999999999987
No 478
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=85.79 E-value=36 Score=33.01 Aligned_cols=102 Identities=5% Similarity=0.035 Sum_probs=57.6
Q ss_pred CEEEEEECCCeEEEEECCC--CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc--------------
Q 009380 296 SKIFTSCYDGLIRLMDAEK--EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-------------- 359 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~--~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-------------- 359 (536)
.+|+.|+.+| |.+.++.. .....+. +...|.++...+...-+++.++....++.+++..-..
T Consensus 14 ~~lL~GTe~G-ly~~~~~~~~~~~~kl~-~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~ 91 (302)
T smart00036 14 KWLLVGTEEG-LYVLNISDQPGTLEKLI-GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRK 91 (302)
T ss_pred cEEEEEeCCc-eEEEEcccCCCCeEEec-CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccc
Confidence 5899999888 55556654 3344443 3458999999988733344444555699999843221
Q ss_pred -ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380 360 -ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS 399 (536)
Q Consensus 360 -~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~ 399 (536)
......|.......+........++++....+|.++....
T Consensus 92 ~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~ 132 (302)
T smart00036 92 NVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYN 132 (302)
T ss_pred cceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccC
Confidence 0111234443333333322223445555567788765543
No 479
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=85.53 E-value=37 Score=32.93 Aligned_cols=235 Identities=8% Similarity=-0.017 Sum_probs=108.5
Q ss_pred ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE-CCCeEEEEECCCCeE---------
Q 009380 248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC-YDGLIRLMDAEKEVF--------- 317 (536)
Q Consensus 248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s-~dg~I~vwd~~~~~~--------- 317 (536)
+++|+.|+.+|...+ ++.... ..... ..+...|+++...+.- +.|++-+ ....++++++..-..
T Consensus 13 ~~~lL~GTe~Gly~~-~~~~~~--~~~~k--l~~~~~v~q~~v~~~~-~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~ 86 (302)
T smart00036 13 GKWLLVGTEEGLYVL-NISDQP--GTLEK--LIGRRSVTQIWVLEEN-NVLLMISGKKPQLYSHPLSALVEKKEALGSAR 86 (302)
T ss_pred CcEEEEEeCCceEEE-EcccCC--CCeEE--ecCcCceEEEEEEhhh-CEEEEEeCCcceEEEEEHHHhhhhhhccCCcc
Confidence 368999999885554 454311 11222 2346789999999887 6666555 334499999842110
Q ss_pred -------EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC--c--cceeE---e-ccCCCeEEEEEecCC-CC
Q 009380 318 -------DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR--K--SATEW---L-LHEARINTIDFNPRN-PN 381 (536)
Q Consensus 318 -------~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~--~--~~~~~---~-~h~~~i~~i~~~p~~-~~ 381 (536)
.....+.....-++........++++....+|.++..... + ....+ . ....++..+..+++. ..
T Consensus 87 ~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (302)
T smart00036 87 LVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERP 166 (302)
T ss_pred ccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccce
Confidence 1122333333333333222123444445557777654322 1 11110 0 111233333333321 23
Q ss_pred EEEEEeCCCcEEEEeCCC--CCCCCCC-cceeeccc-CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc--eEEecc
Q 009380 382 IMATSSTDGTACIWDLRS--MATDKPE-PMKVLSHK-RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--SMIHHN 455 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~--~~~~~~~-~~~~~~~~-~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~--~~~~~~ 455 (536)
.+..|+..+...++++.. ....... ........ .++.... -+++.+|+ + .|....+.|....... ..+...
T Consensus 167 ~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e~Ll-c-~~~~~v~Vn~~G~~~~r~~~l~w~ 243 (302)
T smart00036 167 GICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDEFLL-C-YDEFGVFVNLYGKRRSRNPILHWE 243 (302)
T ss_pred EEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEE-ECCCeEEE-E-ECcEEEEEeCCCCccccceEEEcC
Confidence 566666542345555543 2111100 00011111 2333333 33444443 3 3444555555431211 122211
Q ss_pred CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380 456 NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 456 ~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~ 500 (536)
. .. ..+++. ..||++-. +..|.|+++.+++.++.+.
T Consensus 244 ~---~p---~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 244 F---MP---ESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQELA 279 (302)
T ss_pred C---cc---cEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEEe
Confidence 1 11 113333 35766665 4569999999998877775
No 480
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=85.22 E-value=44 Score=33.55 Aligned_cols=11 Identities=9% Similarity=0.066 Sum_probs=7.9
Q ss_pred cEEEEeCCCCC
Q 009380 391 TACIWDLRSMA 401 (536)
Q Consensus 391 ~i~iwdl~~~~ 401 (536)
.+.+||..+..
T Consensus 190 ~v~~YD~~t~~ 200 (376)
T PRK14131 190 EVLSYDPSTNQ 200 (376)
T ss_pred eEEEEECCCCe
Confidence 47888987743
No 481
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=84.84 E-value=60 Score=34.83 Aligned_cols=213 Identities=13% Similarity=0.147 Sum_probs=0.0
Q ss_pred ecccccCccccccccCCceEEEEEEecCC-ccEEEEE-eCCCcEEEEECCCC---------CCCCCceEEeccCCCCEEE
Q 009380 219 IGSLTLKPENIARIMPGRITQMKFLPCSD-VRMVVAG-SKLGNITFWNLDSQ---------QDEDNGIYLFRTHLGPISG 287 (536)
Q Consensus 219 lw~~~~~~~~~~~~~~~~I~~v~~~p~~~-~~~l~tg-~~dg~v~iwd~~~~---------~~~~~~~~~~~~h~~~V~~ 287 (536)
+|+....+..+ |.||......+ ..+.++| ...+.-++-.+... ..+......+.- ...|..
T Consensus 63 iwsypi~pt~i-------V~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl-~~kvv~ 134 (670)
T PF10395_consen 63 IWSYPISPTTI-------VECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELKL-DDKVVG 134 (670)
T ss_pred eEeeccCcCce-------EEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEEc-ccceEE
Q ss_pred EEEecCCCCEEEEEECCCeEEEEEC----------CCCeEEEeecCCCceeEEEecCCCCCEEEEEE---CCCeEEEEEC
Q 009380 288 IVTQQYCLSKIFTSCYDGLIRLMDA----------EKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE---GQGGLNIWDV 354 (536)
Q Consensus 288 l~~~~~~~~~l~s~s~dg~I~vwd~----------~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~---~dg~i~i~d~ 354 (536)
|.|.+++ ..+++...+|.|.+||. .+.....-..+..-|.....-.....++..+. ..-..+++.+
T Consensus 135 Ik~~~~~-~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l 213 (670)
T PF10395_consen 135 IKFSSDG-KIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISL 213 (670)
T ss_pred EEEecCC-CEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEe
Q ss_pred -CCCccceeEe---ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcce-eecccCceeEEEEccCCCeE
Q 009380 355 -RSRKSATEWL---LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMK-VLSHKRAVHSAYFSPSGSSL 429 (536)
Q Consensus 355 -~~~~~~~~~~---~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~-~~~~~~~v~~l~~sp~g~~l 429 (536)
.....+..+. .+........|+-..+.+..- .++.|.+|++...+......+. +..... -.-+++.|-..-=
T Consensus 214 ~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~-~~~vSl~~~s~nR 290 (670)
T PF10395_consen 214 SNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKES-DDLVSLKPPSPNR 290 (670)
T ss_pred ccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhcccc-ccceEeecCCCCe
Q ss_pred EEEeCCCcEEEEeC
Q 009380 430 ATTSFDDTIGIWSG 443 (536)
Q Consensus 430 ~t~s~dg~I~iwd~ 443 (536)
+.-+.++.|++.|+
T Consensus 291 vLLs~~nkIyLld~ 304 (670)
T PF10395_consen 291 VLLSVNNKIYLLDL 304 (670)
T ss_pred EEEEcCCEEEEEee
No 482
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=84.76 E-value=31 Score=37.23 Aligned_cols=67 Identities=10% Similarity=0.037 Sum_probs=37.4
Q ss_pred CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEEC
Q 009380 281 HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV 354 (536)
Q Consensus 281 h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~ 354 (536)
|-+.++.+.|.-++ .-++..-.|.+ ........+-.....|...+|+.+. ..++....+.+|.++|-
T Consensus 75 hf~~~~~~~f~~~~-gDii~~~~dp~-----p~e~~~eivG~v~nGIvaa~wS~DE-~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 75 HFHVLTFEYFLIDE-GDIIHLVNDPT-----PAELEMEIVGKVSNGIVAASWSADE-KTWCVVTSTREILLFDK 141 (1243)
T ss_pred hhhhhheeeEEecC-CcEEEEEcCCC-----cccchhhhhccccCceEEEeeccCC-ceEEEEEcCceEEEEec
Confidence 44556666666655 33333333332 0111112222345778888999887 66666666778877763
No 483
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.67 E-value=16 Score=41.62 Aligned_cols=35 Identities=17% Similarity=0.393 Sum_probs=30.1
Q ss_pred ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECC
Q 009380 230 ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLD 266 (536)
Q Consensus 230 ~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~ 266 (536)
..+.+.....++|+| ...++|.|+..|.|.+|-..
T Consensus 31 ~~G~~~~~~~~afD~--~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 31 RHGFPSTPSALAFDP--TQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred ecCCCCCCcceeecc--ccceEEEEEecccEEEeccc
Confidence 355677788899999 88999999999999999765
No 484
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=84.37 E-value=0.82 Score=34.51 Aligned_cols=15 Identities=53% Similarity=0.855 Sum_probs=14.1
Q ss_pred CCHHHHHHHHhHHHH
Q 009380 6 LTEYERKRLENIKRN 20 (536)
Q Consensus 6 ~~~~e~~r~~~i~~n 20 (536)
|||+||+||+.|.|+
T Consensus 3 LSe~E~r~L~eiEr~ 17 (82)
T PF11239_consen 3 LSEHEQRRLEEIERQ 17 (82)
T ss_pred CCHHHHHHHHHHHHH
Confidence 899999999999986
No 485
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.26 E-value=13 Score=37.89 Aligned_cols=88 Identities=11% Similarity=0.089 Sum_probs=57.5
Q ss_pred cCceeEEEEccCCCeEEEEeCCCcEEEEeCC---------CCCcceEEeccC------CCCceeeeeEEEEcCCC---CE
Q 009380 414 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGV---------NFENTSMIHHNN------QTGRWISSFRAIWGWDD---SC 475 (536)
Q Consensus 414 ~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~---------~~~~~~~~~~~~------~~~~~~~~~~~~~s~~g---~~ 475 (536)
...|..+..++.|..++..+.+|.+.++=.+ +++.....+... .....++...+.|+|+. ..
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 3467888999999999999999966554322 233222221110 11133555668899975 56
Q ss_pred EEEEcCCCcEEEEcCCccccceeccC
Q 009380 476 VFIGNMTRTVEVISPAQRRSVATLQS 501 (536)
Q Consensus 476 l~~gs~dg~I~v~d~~~~~~~~~l~~ 501 (536)
|..-+.|+.|++||......++...+
T Consensus 183 L~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred EEEEecCcEEEEEecCCcchhhccCC
Confidence 77788899999999987766654443
No 486
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=84.24 E-value=33 Score=34.20 Aligned_cols=125 Identities=16% Similarity=0.177 Sum_probs=67.4
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEeec-----CCCceeEEEecCCCCCEEEEE-------ECCCeEEEEECCCCccceeE
Q 009380 296 SKIFTSCYDGLIRLMDAEKEVFDLVYS-----SEYAVFSLSQQPNNVNTLYFG-------EGQGGLNIWDVRSRKSATEW 363 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~-----~~~~i~~l~~~~~~~~~l~~g-------~~dg~i~i~d~~~~~~~~~~ 363 (536)
+.+..-+.-+.|-+|+..+++....+. ......-+.|.+.. ++++.. ..++.|.+||.+...
T Consensus 236 ~~l~~~s~~~~Igvw~~~t~q~~d~~~~s~~dsag~~~kL~w~ng~-~~li~~~~fp~~~kdN~~i~~~d~Rd~n----- 309 (465)
T KOG2714|consen 236 TQLVALSSVGKIGVWHAVTQQAQDVQPISSYDSAGSFLKLGWLNGS-NLLIDSQKFPLRMKDNDLIVTEDFRDRN----- 309 (465)
T ss_pred hhhhhccccccccccchhhhceeeeeeccCccccCChhhhccccCc-eeEEEEeeccccccCCceEEEeeccCCC-----
Confidence 344555667889999998874433322 23345556676654 444432 246789999998766
Q ss_pred eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC-CC-cceeecccCceeEEEEccCCCeEEEEeCCCcEEEE
Q 009380 364 LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK-PE-PMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441 (536)
Q Consensus 364 ~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~-~~-~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iw 441 (536)
++..|. .++.+...+.+++-|.-...... .. ...+..|..+. + ++=.+...+.+++|
T Consensus 310 -------~~~~W~-----~i~~gt~~~~vrv~~~~~~~~~~~~~l~~~f~~~~~~L--------~-~idv~~~~~~~~~~ 368 (465)
T KOG2714|consen 310 -------TSGNWI-----EIAYGTSSGEVRVIDQHPETVGVGPCLFQTFEVHGSPL--------G-LIDVCSDGGHVRVW 368 (465)
T ss_pred -------ccceEE-----EecCCccccceEeeeccccccCCCCeEEEEEEecCCCc--------c-eeehhhhCCcceEE
Confidence 123443 24445556677776654322111 11 11222344331 1 23334455679999
Q ss_pred eCCCCC
Q 009380 442 SGVNFE 447 (536)
Q Consensus 442 d~~~~~ 447 (536)
......
T Consensus 369 ~~tr~r 374 (465)
T KOG2714|consen 369 NSTRFR 374 (465)
T ss_pred eecccc
Confidence 876543
No 487
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=83.65 E-value=8.8 Score=41.36 Aligned_cols=155 Identities=13% Similarity=0.111 Sum_probs=93.4
Q ss_pred CCceEEEEEEec-------------------CCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC
Q 009380 234 PGRITQMKFLPC-------------------SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC 294 (536)
Q Consensus 234 ~~~I~~v~~~p~-------------------~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 294 (536)
..+++|+.+.|. .+...+..|+.++.|.|+.-............+......+.++.+++.
T Consensus 514 ~~r~lcm~y~Ps~ee~~~sp~a~P~~~~~~as~~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~- 592 (925)
T KOG3522|consen 514 GGRNLCMSYLPSLEELTQSPTAVPETPDTQASPHPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG- 592 (925)
T ss_pred cccccchhhCcchhhccCCCCCCCCCcccccCCCCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc-
Confidence 567777777771 123467888999999999876322111122223334456777777764
Q ss_pred CCEEEEEECCCeEEEE--------ECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe--
Q 009380 295 LSKIFTSCYDGLIRLM--------DAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-- 364 (536)
Q Consensus 295 ~~~l~s~s~dg~I~vw--------d~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-- 364 (536)
-+..|.-||++-.+ |.+ -.+.+.....+|.+..+..+ ++.++.+|.|.++...+......+.
T Consensus 593 --Slgagl~dgt~a~y~rap~gSwd~e--p~~~~~~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~~~leah 664 (925)
T KOG3522|consen 593 --SLGAGLIDGTLAVYGRAPSGSWDGE--PNISIPTGSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRSWDLEAH 664 (925)
T ss_pred --ccccCccCCccccccCCCCCCCCCC--CccccccCCccccchhhhhc----eeeeecCCceEEEechhccccchhHHH
Confidence 36666666666544 433 11112234467888888754 5778889999999988765544443
Q ss_pred -ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380 365 -LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS 399 (536)
Q Consensus 365 -~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~ 399 (536)
.|...|+++.....+ -+++.++.| .+++++..+
T Consensus 665 qee~~~Vthm~~~~~g-VwvafasG~-~~rlfhtet 698 (925)
T KOG3522|consen 665 QEEAHSVTHMLYLDNG-VWVAFASGD-EERLFHTET 698 (925)
T ss_pred HhhcceEEEEEeeCCc-eEEEEcCCC-EEEEecccc
Confidence 456678888888644 444444433 455555544
No 488
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.44 E-value=40 Score=31.69 Aligned_cols=196 Identities=13% Similarity=0.020 Sum_probs=119.3
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE 315 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~ 315 (536)
.-..|+-.| ||..-+++...|.|.-.|..+ ++....-.+....-..|..-|++ ..-++-+.. -|.-.|-++.
T Consensus 63 ap~dvapap--dG~VWft~qg~gaiGhLdP~t----Gev~~ypLg~Ga~Phgiv~gpdg-~~Witd~~~-aI~R~dpkt~ 134 (353)
T COG4257 63 APFDVAPAP--DGAVWFTAQGTGAIGHLDPAT----GEVETYPLGSGASPHGIVVGPDG-SAWITDTGL-AIGRLDPKTL 134 (353)
T ss_pred CccccccCC--CCceEEecCccccceecCCCC----CceEEEecCCCCCCceEEECCCC-CeeEecCcc-eeEEecCccc
Confidence 345677777 998899988888888888877 34444334445556678888988 444433322 5666677665
Q ss_pred eEEEee---c-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380 316 VFDLVY---S-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDG 390 (536)
Q Consensus 316 ~~~~~~---~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg 390 (536)
....+. . .........|.+.+ ++.+++. .|.---.|..+ ..+..+. .....-+.||..|+|. +.++.-.+.
T Consensus 135 evt~f~lp~~~a~~nlet~vfD~~G-~lWFt~q-~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagn 210 (353)
T COG4257 135 EVTRFPLPLEHADANLETAVFDPWG-NLWFTGQ-IGAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGS-VWYASLAGN 210 (353)
T ss_pred ceEEeecccccCCCcccceeeCCCc-cEEEeec-cccceecCccc-CceeeeccCCCCCCcceEECCCCc-EEEEecccc
Confidence 544332 2 24677888899988 6777665 33322223222 1233443 2334567899999885 444444566
Q ss_pred cEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 009380 391 TACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF 446 (536)
Q Consensus 391 ~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~ 446 (536)
.|-..|...+.. ..+... .....-..+--+|.|..-++....+.+.-||..+.
T Consensus 211 aiaridp~~~~a---ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 211 AIARIDPFAGHA---EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred ceEEcccccCCc---ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence 777777766531 111111 22334455666788888888777788888886543
No 489
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=83.09 E-value=15 Score=39.20 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=47.0
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
.-++++.-+| .+.-++.+..||.|.+|+..... ...+.. ...+-..+.|...| |+++..|..+.-|.-+
T Consensus 15 e~~~aiqshp--~~~s~v~~~~d~si~lfn~~~r~--qski~~---~~~p~~nlv~tnhg---l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 15 EFTTAIQSHP--GGQSFVLAHQDGSIILFNFIPRR--QSKICE---EAKPKENLVFTNHG---LVTATSDRRALAWKED 83 (1636)
T ss_pred ceeeeeeecC--CCceEEEEecCCcEEEEeecccc--hhhhhh---hcCCccceeeeccc---eEEEeccchhheeecc
Confidence 3477888889 99999999999999999987522 111111 22333445666554 7777778877777644
No 490
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.08 E-value=60 Score=33.43 Aligned_cols=75 Identities=12% Similarity=0.159 Sum_probs=47.2
Q ss_pred ceeEEEecCCCCCEEEEEECCCeEEEEE---------CCCCcccee---E------e--ccCCCeEEEEEecCC--CCEE
Q 009380 326 AVFSLSQQPNNVNTLYFGEGQGGLNIWD---------VRSRKSATE---W------L--LHEARINTIDFNPRN--PNIM 383 (536)
Q Consensus 326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d---------~~~~~~~~~---~------~--~h~~~i~~i~~~p~~--~~~l 383 (536)
.|..+..++.| ..++..+.+|-+.++= +..|+.+-. + . ...-.+..++|||+. ...|
T Consensus 105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 46677788888 6777777777554442 123332111 1 1 111235678999976 4566
Q ss_pred EEEeCCCcEEEEeCCCCC
Q 009380 384 ATSSTDGTACIWDLRSMA 401 (536)
Q Consensus 384 ~s~s~dg~i~iwdl~~~~ 401 (536)
..-+.|.+|++||+....
T Consensus 184 ~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEecCcEEEEEecCCcc
Confidence 667779999999998754
No 491
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=82.75 E-value=47 Score=31.93 Aligned_cols=170 Identities=15% Similarity=0.194 Sum_probs=88.2
Q ss_pred eEEEEECCCCeEEEeec-------CCCceeEEEecCCCC----CEEEEEE-CCCeEEEEECCCCccceeEec--------
Q 009380 306 LIRLMDAEKEVFDLVYS-------SEYAVFSLSQQPNNV----NTLYFGE-GQGGLNIWDVRSRKSATEWLL-------- 365 (536)
Q Consensus 306 ~I~vwd~~~~~~~~~~~-------~~~~i~~l~~~~~~~----~~l~~g~-~dg~i~i~d~~~~~~~~~~~~-------- 365 (536)
.|.+||+.+.+....+. ..+.+..+.+..... .+++... ..+.|.++|+.+++.-+.+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 45667777765544432 345667777766332 2455444 346899999998764333221
Q ss_pred -----------cCCCeEEEEEec---CCCCEEEEEeCCCcEEEEeCCC-----CCCCCCC----cceeeccc-CceeEEE
Q 009380 366 -----------HEARINTIDFNP---RNPNIMATSSTDGTACIWDLRS-----MATDKPE----PMKVLSHK-RAVHSAY 421 (536)
Q Consensus 366 -----------h~~~i~~i~~~p---~~~~~l~s~s~dg~i~iwdl~~-----~~~~~~~----~~~~~~~~-~~v~~l~ 421 (536)
....+..++.+| ++ .+|.-....+. ++|.+.+ ....... .....+.. .....++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~-r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDG-RWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCc-cEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 123366677766 44 45555543332 3333322 1110001 11222332 4667889
Q ss_pred EccCCCeEEEEeCCCcEEEEeCCCC---CcceEEeccCCCCceeeeeEEEEcC--CCCEEEEE
Q 009380 422 FSPSGSSLATTSFDDTIGIWSGVNF---ENTSMIHHNNQTGRWISSFRAIWGW--DDSCVFIG 479 (536)
Q Consensus 422 ~sp~g~~l~t~s~dg~I~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~--~g~~l~~g 479 (536)
++++|.++++--..+.|..|+.... +....+......-.|... +.+.+ +|.+.+..
T Consensus 193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~--~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG--LKIDPEGDGYLWVLS 253 (287)
T ss_dssp EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE--EEE-T--TS-EEEEE
T ss_pred ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce--eeeccccCceEEEEE
Confidence 9999998888889999999998752 233344444433445554 33555 55444333
No 492
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.37 E-value=43 Score=34.38 Aligned_cols=60 Identities=8% Similarity=0.098 Sum_probs=37.4
Q ss_pred cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc-eee--cccCceeEEEEccCC
Q 009380 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM-KVL--SHKRAVHSAYFSPSG 426 (536)
Q Consensus 366 h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~-~~~--~~~~~v~~l~~sp~g 426 (536)
.-.....|+|.|++ .+|++--..|.|++++...........+ ... ........|+++|+-
T Consensus 28 GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34566889999987 5666654469999998655321100000 111 135778999999875
No 493
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.16 E-value=10 Score=33.21 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=25.0
Q ss_pred CceeEEEEccCC------CeEEEEeCCCcEEEEeCC
Q 009380 415 RAVHSAYFSPSG------SSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 415 ~~v~~l~~sp~g------~~l~t~s~dg~I~iwd~~ 444 (536)
..|.+++|||.| .+|++.+.++.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 488999999954 378888999999999754
No 494
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=82.05 E-value=12 Score=41.24 Aligned_cols=66 Identities=9% Similarity=0.195 Sum_probs=47.7
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceE---EeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIY---LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE 315 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~---~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~ 315 (536)
...++++|...|.+.+++..... ..... .-.+|+.++.-+.|.|++ ..++.+-..|...+|.....
T Consensus 159 e~~lla~G~~~g~v~~y~~~~~~--ssl~~s~~~~~~~ti~~~~~~~~p~~-~~~av~~~~g~ls~wS~~g~ 227 (1023)
T KOG2006|consen 159 EFQLLAYGTPVGEVLLYSIDEAN--SSLVFSNRDDDTLTVPDNNSSWRPDQ-NGFAVTWEKGFLAFWSNQGN 227 (1023)
T ss_pred hhhhheecccccceeehhhhhhc--cceeeecccCccccccccccCcCCcc-ceeeeeecccceEEeccccc
Confidence 78899999999999999987532 11111 112344477788899988 88888888888888886543
No 495
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=81.43 E-value=73 Score=33.26 Aligned_cols=270 Identities=13% Similarity=0.141 Sum_probs=127.4
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC-CCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL-GPISGIVTQQYCLSKIFTSCYDGLIRLMDA 312 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~ 312 (536)
..+|..+.+.- .| .+.+|+.|| +..||..+ ++.+..-.... ..|..+...-. ..|..|+.+| |.+.+.
T Consensus 164 d~~V~aLv~D~--~g-~lWvgT~dG-L~~fd~~~----gkalql~s~~~dk~I~al~~d~q--g~LWVGTdqG-v~~~e~ 232 (671)
T COG3292 164 DTPVVALVFDA--NG-RLWVGTPDG-LSYFDAGR----GKALQLASPPLDKAINALIADVQ--GRLWVGTDQG-VYLQEA 232 (671)
T ss_pred Cccceeeeeec--cC-cEEEecCCc-ceEEcccc----ceEEEcCCCcchhhHHHHHHHhc--CcEEEEeccc-eEEEch
Confidence 45788888876 54 566777776 44555544 33333222222 45555554444 4678888777 677776
Q ss_pred CCCeEEEee--cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc--CCCeEEEEEecCCCCEEEEEeC
Q 009380 313 EKEVFDLVY--SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH--EARINTIDFNPRNPNIMATSST 388 (536)
Q Consensus 313 ~~~~~~~~~--~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h--~~~i~~i~~~p~~~~~l~s~s~ 388 (536)
+........ -....|..+.-..++ .+..|+.+|-.+.--.+.+-.......| -..|+++....+|. +-+++.
T Consensus 233 ~G~~~sn~~~~lp~~~I~ll~qD~qG--~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs--LWv~t~ 308 (671)
T COG3292 233 EGWRASNWGPMLPSGNILLLVQDAQG--ELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS--LWVGTY 308 (671)
T ss_pred hhccccccCCCCcchheeeeecccCC--CEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC--Eeeecc
Confidence 663322211 123455555555554 6777888875544333322222222222 24566666666663 666666
Q ss_pred CCcEEEEeCCCCCCCCCCcce-eecc-cCceeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeee
Q 009380 389 DGTACIWDLRSMATDKPEPMK-VLSH-KRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISS 464 (536)
Q Consensus 389 dg~i~iwdl~~~~~~~~~~~~-~~~~-~~~v~~l~~sp--~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 464 (536)
+|.+++-+-.- .... +... ...+..++..| .+..+--...-|.+.+-+-.++........ ..+..++.
T Consensus 309 ~giv~~~~a~w------~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q--~Rg~nit~ 380 (671)
T COG3292 309 GGIVRYLTADW------KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQ--LRGMNITT 380 (671)
T ss_pred CceEEEecchh------hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeee--ccccccch
Confidence 66555433211 0101 1111 01111111111 111111111112222222233333332211 11222333
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEcCCc-cccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEE
Q 009380 465 FRAIWGWDDSCVFIGNMTRTVEVISPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 532 (536)
Q Consensus 465 ~~~~~s~~g~~l~~gs~dg~I~v~d~~~-~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~i 532 (536)
.++.. +..+..|+++.-+..|+..+ +-.+....+...+.+ +.+.-.|.+ + |..|+.+|.++.
T Consensus 381 --~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V-~aived~dn-s-LWIGTs~Glvk~ 443 (671)
T COG3292 381 --TLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEV-SAIVEDPDN-S-LWIGTSGGLVKR 443 (671)
T ss_pred --hhhcc-CCcEEEEecccchhhhccCCcccccccccCCcccce-eeeeecCCC-C-EEEeccCCeEec
Confidence 22344 44567777776677777766 434444444444444 445566633 3 888888887653
No 496
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.95 E-value=16 Score=41.58 Aligned_cols=158 Identities=13% Similarity=0.090 Sum_probs=90.6
Q ss_pred CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-CeEEEeecCCCceeEEEe--------cCCCCCEEEEEECCCeEEE
Q 009380 281 HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-EVFDLVYSSEYAVFSLSQ--------QPNNVNTLYFGEGQGGLNI 351 (536)
Q Consensus 281 h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-~~~~~~~~~~~~i~~l~~--------~~~~~~~l~~g~~dg~i~i 351 (536)
|...-+.+-+.|.=+..-+ +-|+.+.+|+.++ +.+...-+....|..+.. .|.=.++|++++.- .|.+
T Consensus 77 ~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~-ei~i 153 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPV-EIVI 153 (1311)
T ss_pred CcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccc-eEEE
Confidence 4443444555554313333 3488899999998 444444444555555543 22222345555543 5666
Q ss_pred EECCC----Ccc-----ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC--CC------C------------
Q 009380 352 WDVRS----RKS-----ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS--MA------T------------ 402 (536)
Q Consensus 352 ~d~~~----~~~-----~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~--~~------~------------ 402 (536)
+-+.- +.. ..++....-.|+||....+| ++|.+|- || .+|.+.- .. +
T Consensus 154 lgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nG-RIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~ 229 (1311)
T KOG1900|consen 154 LGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENG-RIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSS 229 (1311)
T ss_pred EEEEeccccCcccccccceeeecCCceEEEEEeccCC-cEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHH
Confidence 54332 111 11222335668889866655 6776664 66 4444321 10 0
Q ss_pred CCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380 403 DKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 403 ~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~ 445 (536)
.-+....+. .+..+|..+.....-..+.+-+..++|.+||+..
T Consensus 230 lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 230 LVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 001222333 5677999999998888999999999999999875
No 497
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=80.33 E-value=68 Score=32.78 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=25.1
Q ss_pred CceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380 415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~ 445 (536)
..|.++...+..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488999999889999999999999999975
No 498
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=80.32 E-value=1.1e+02 Score=34.60 Aligned_cols=170 Identities=13% Similarity=0.153 Sum_probs=87.5
Q ss_pred EEEEECCCCccceeEeccC----CCeEEEEEecCCCC-EEEEEeC-----------CCcEEEEeCCCCCCCCCCcceee-
Q 009380 349 LNIWDVRSRKSATEWLLHE----ARINTIDFNPRNPN-IMATSST-----------DGTACIWDLRSMATDKPEPMKVL- 411 (536)
Q Consensus 349 i~i~d~~~~~~~~~~~~h~----~~i~~i~~~p~~~~-~l~s~s~-----------dg~i~iwdl~~~~~~~~~~~~~~- 411 (536)
|+++|..+++.+..+.... -.+..+.|+..+.. ++++|.. +|.++.|++-... ..+.+.
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g----~~lellh 930 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNG----DKLELLH 930 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecC----ceeeeee
Confidence 6777777666655554222 23566666654433 3343332 3456666654432 122222
Q ss_pred --cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEE--
Q 009380 412 --SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEV-- 487 (536)
Q Consensus 412 --~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v-- 487 (536)
.-.+.| .+..|...++++ +....+++||+-..+.+....... ....++.+ . ..+..+++|...-.|.+
T Consensus 931 ~T~~~~~v--~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~-~p~~Is~i--q--t~~~RI~VgD~qeSV~~~~ 1002 (1205)
T KOG1898|consen 931 KTEIPGPV--GAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKF-IPNRISSI--Q--TYGARIVVGDIQESVHFVR 1002 (1205)
T ss_pred ccCCCccc--eEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhcc-CceEEEEE--e--ecceEEEEeeccceEEEEE
Confidence 122233 456675555554 456789999997766655543222 12223332 2 24557778766655554
Q ss_pred EcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380 488 ISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533 (536)
Q Consensus 488 ~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW 533 (536)
|+.... .+..+.........+...+- |.+.+|.+..=|.+.+-
T Consensus 1003 y~~~~n-~l~~fadD~~pR~Vt~~~~l--D~~tvagaDrfGNi~~v 1045 (1205)
T KOG1898|consen 1003 YRREDN-QLIVFADDPVPRHVTALELL--DYDTVAGADRFGNIAVV 1045 (1205)
T ss_pred EecCCC-eEEEEeCCCccceeeEEEEe--cCCceeeccccCcEEEE
Confidence 443333 44555444333332333333 44678888777776654
No 499
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=78.82 E-value=88 Score=32.62 Aligned_cols=147 Identities=16% Similarity=0.058 Sum_probs=69.8
Q ss_pred CCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCc----eeEE
Q 009380 345 GQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRA----VHSA 420 (536)
Q Consensus 345 ~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~----v~~l 420 (536)
..+...++|. .|..+..+.........+...++| ++++... ..++.+|+-. .+......... =+.+
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG-~ll~~~~--~~~~e~D~~G------~v~~~~~l~~~~~~~HHD~ 195 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNG-NLLIGSG--NRLYEIDLLG------KVIWEYDLPGGYYDFHHDI 195 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS--EEEEEB--TEEEEE-TT--------EEEEEE--TTEE-B-S-E
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCC-CEEEecC--CceEEEcCCC------CEEEeeecCCccccccccc
Confidence 3456666664 344444443222221116667766 5555444 6788888754 22222222221 2567
Q ss_pred EEccCCCeEEEEeC-------------CCcEEEEeCCCCCcceEEec----------------------cCCCCceeeee
Q 009380 421 YFSPSGSSLATTSF-------------DDTIGIWSGVNFENTSMIHH----------------------NNQTGRWISSF 465 (536)
Q Consensus 421 ~~sp~g~~l~t~s~-------------dg~I~iwd~~~~~~~~~~~~----------------------~~~~~~~~~~~ 465 (536)
..-|+|++|+.+.. ...|..+| .+++.+..... ......|...-
T Consensus 196 ~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~N 274 (477)
T PF05935_consen 196 DELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHIN 274 (477)
T ss_dssp EE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EE
T ss_pred EECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccC
Confidence 78899998888772 22355555 55554443321 11234466666
Q ss_pred EEEEcC-CCCEEEEEcCCCcEEEEcCCccccceeccCC
Q 009380 466 RAIWGW-DDSCVFIGNMTRTVEVISPAQRRSVATLQSP 502 (536)
Q Consensus 466 ~~~~s~-~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~ 502 (536)
.+.+.+ ++.+|+++-....|...|..++++...+..+
T Consensus 275 si~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 275 SIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp EEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred ccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 677888 5555555555568888998888877776543
No 500
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=78.07 E-value=44 Score=31.90 Aligned_cols=97 Identities=11% Similarity=0.183 Sum_probs=58.6
Q ss_pred CeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe------CCCcEEEEeCCCCCCCCCCcceee-----cccC
Q 009380 347 GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS------TDGTACIWDLRSMATDKPEPMKVL-----SHKR 415 (536)
Q Consensus 347 g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s------~dg~i~iwdl~~~~~~~~~~~~~~-----~~~~ 415 (536)
..|++||..+.+-..--.+-.+.|++|.|..++ ++++.|. ....+..||+.+.. ...+. .-.+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~-----w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQT-----WSSLGGGSSNSIPG 89 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCe-----eeecCCcccccCCC
Confidence 469999987765443333456789999998543 5777665 34568889988742 11111 1246
Q ss_pred ceeEEEEcc-CCC-eEEEEe-C--CCcEEEEeCCCCCcc
Q 009380 416 AVHSAYFSP-SGS-SLATTS-F--DDTIGIWSGVNFENT 449 (536)
Q Consensus 416 ~v~~l~~sp-~g~-~l~t~s-~--dg~I~iwd~~~~~~~ 449 (536)
+|..+.+.. ++. ..+.|. . +..|..||-..+..+
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence 788887754 443 343433 2 334777876554433
Done!