Query 009380
Match_columns 536
No_of_seqs 874 out of 3239
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 03:54:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 2.7E-43 9.4E-48 377.2 42.8 345 174-536 50-566 (611)
2 1vyh_C Platelet-activating fac 100.0 2.7E-43 9.3E-48 358.6 40.5 290 226-536 100-410 (410)
3 1got_B GT-beta; complex (GTP-b 100.0 6.4E-43 2.2E-47 346.8 40.7 290 225-534 46-340 (340)
4 3ow8_A WD repeat-containing pr 100.0 3E-42 1E-46 339.0 38.0 289 230-535 28-319 (321)
5 2pbi_B Guanine nucleotide-bind 100.0 7.7E-42 2.6E-46 340.9 40.4 292 225-534 55-354 (354)
6 4g56_B MGC81050 protein; prote 100.0 2.1E-42 7.2E-47 345.3 34.9 305 214-536 25-342 (357)
7 3iz6_a 40S ribosomal protein R 100.0 6E-43 2E-47 352.5 30.4 298 227-536 59-374 (380)
8 2ynn_A Coatomer subunit beta'; 100.0 1.6E-41 5.6E-46 331.2 39.5 292 224-535 3-300 (304)
9 2ymu_A WD-40 repeat protein; u 100.0 3E-41 1E-45 358.8 43.0 324 175-534 254-577 (577)
10 1vyh_C Platelet-activating fac 100.0 1.3E-41 4.5E-46 346.2 37.4 288 176-490 101-409 (410)
11 1nr0_A Actin interacting prote 100.0 2.8E-41 9.5E-46 361.6 40.1 326 182-536 17-354 (611)
12 4e54_B DNA damage-binding prot 100.0 9.3E-42 3.2E-46 350.2 33.9 299 230-536 115-429 (435)
13 4ery_A WD repeat-containing pr 100.0 1.8E-40 6.1E-45 324.8 40.8 290 228-536 17-311 (312)
14 4gqb_B Methylosome protein 50; 100.0 9.6E-41 3.3E-45 331.1 37.1 300 218-536 17-330 (344)
15 2ymu_A WD-40 repeat protein; u 100.0 3E-40 1E-44 351.0 43.3 326 175-536 213-538 (577)
16 1got_B GT-beta; complex (GTP-b 100.0 2.2E-40 7.4E-45 328.6 39.2 289 175-489 47-340 (340)
17 2pm9_A Protein WEB1, protein t 100.0 1.2E-41 4E-46 346.4 30.2 343 182-536 11-413 (416)
18 3ow8_A WD repeat-containing pr 100.0 7.8E-41 2.7E-45 328.9 34.9 287 177-491 26-320 (321)
19 4gqb_B Methylosome protein 50; 100.0 2.1E-40 7.1E-45 328.7 38.0 296 181-494 28-333 (344)
20 1r5m_A SIR4-interacting protei 100.0 2.2E-40 7.6E-45 337.2 38.1 324 180-536 42-424 (425)
21 3frx_A Guanine nucleotide-bind 100.0 2.9E-40 9.9E-45 324.6 37.3 290 229-535 12-315 (319)
22 3frx_A Guanine nucleotide-bind 100.0 1.4E-40 4.8E-45 326.9 34.7 297 173-493 7-318 (319)
23 2ynn_A Coatomer subunit beta'; 100.0 4.4E-40 1.5E-44 321.0 37.7 293 173-492 3-302 (304)
24 4g56_B MGC81050 protein; prote 100.0 2.6E-40 8.7E-45 330.2 35.5 297 180-494 39-345 (357)
25 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.3E-40 7.9E-45 329.0 33.3 295 230-536 11-334 (345)
26 3fm0_A Protein CIAO1; WDR39,SG 100.0 5E-40 1.7E-44 326.7 35.1 307 174-499 6-342 (345)
27 2xzm_R RACK1; ribosome, transl 100.0 1.7E-39 5.8E-44 322.5 37.9 297 173-493 11-341 (343)
28 3iz6_a 40S ribosomal protein R 100.0 1.5E-40 5.2E-45 334.9 30.2 304 173-495 56-378 (380)
29 1gxr_A ESG1, transducin-like e 100.0 3.5E-39 1.2E-43 317.9 38.4 322 182-535 8-335 (337)
30 2pbi_B Guanine nucleotide-bind 100.0 1.7E-39 5.8E-44 323.9 36.3 292 174-489 55-354 (354)
31 1erj_A Transcriptional repress 100.0 6.9E-39 2.4E-43 324.3 40.1 287 232-536 62-388 (393)
32 3ei3_B DNA damage-binding prot 100.0 3.8E-39 1.3E-43 324.8 37.6 295 229-536 68-381 (383)
33 2hes_X YDR267CP; beta-propelle 100.0 2.5E-39 8.5E-44 319.5 35.1 294 228-536 8-327 (330)
34 2xzm_R RACK1; ribosome, transl 100.0 1.3E-38 4.3E-43 316.2 39.1 292 227-536 14-339 (343)
35 3zwl_B Eukaryotic translation 100.0 9.3E-38 3.2E-42 311.6 40.1 287 229-536 27-345 (369)
36 2hes_X YDR267CP; beta-propelle 100.0 1.3E-38 4.3E-43 314.5 32.5 300 174-492 5-328 (330)
37 1erj_A Transcriptional repress 100.0 7.1E-38 2.4E-42 316.8 36.7 289 181-493 62-390 (393)
38 2j04_B YDR362CP, TAU91; beta p 100.0 8.2E-39 2.8E-43 333.4 30.3 342 182-536 132-516 (524)
39 3vl1_A 26S proteasome regulato 100.0 5.4E-38 1.9E-42 320.0 34.5 321 184-536 57-418 (420)
40 4a11_B DNA excision repair pro 100.0 1.4E-37 4.8E-42 314.9 36.2 315 213-536 21-364 (408)
41 4aow_A Guanine nucleotide-bind 100.0 4.3E-37 1.5E-41 303.7 37.7 291 229-536 33-336 (340)
42 3dm0_A Maltose-binding peripla 100.0 2.1E-37 7.1E-42 336.8 38.0 293 229-536 377-692 (694)
43 4aow_A Guanine nucleotide-bind 100.0 3.1E-37 1.1E-41 304.7 35.6 300 171-494 26-339 (340)
44 4ery_A WD repeat-containing pr 100.0 4E-37 1.4E-41 301.0 35.6 291 173-491 13-311 (312)
45 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-37 4.9E-42 311.1 32.8 291 229-535 3-359 (372)
46 2oaj_A Protein SNI1; WD40 repe 100.0 3.9E-37 1.3E-41 341.9 37.4 201 179-400 13-243 (902)
47 3dm0_A Maltose-binding peripla 100.0 5.4E-37 1.9E-41 333.5 36.5 296 172-491 371-692 (694)
48 3v7d_B Cell division control p 100.0 1.2E-36 4.3E-41 314.4 37.3 319 177-535 115-461 (464)
49 3gre_A Serine/threonine-protei 100.0 6.1E-37 2.1E-41 314.2 32.5 320 187-534 31-437 (437)
50 3sfz_A APAF-1, apoptotic pepti 100.0 5.6E-37 1.9E-41 354.6 36.2 337 175-536 607-1033(1249)
51 3dwl_C Actin-related protein 2 100.0 6.6E-38 2.3E-42 314.8 24.7 250 229-491 6-280 (377)
52 1sq9_A Antiviral protein SKI8; 100.0 1.2E-36 4.2E-41 307.5 34.1 294 228-536 10-394 (397)
53 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.3E-35 4.4E-40 305.3 40.5 321 176-536 111-441 (445)
54 3k26_A Polycomb protein EED; W 100.0 2E-36 6.9E-41 301.8 32.8 295 229-536 13-365 (366)
55 2pm7_B Protein transport prote 100.0 3.4E-36 1.2E-40 292.4 33.3 256 229-491 4-284 (297)
56 1gxr_A ESG1, transducin-like e 100.0 2.4E-35 8.2E-40 290.5 39.7 281 180-490 48-335 (337)
57 1pgu_A Actin interacting prote 100.0 5.4E-36 1.9E-40 320.3 37.3 331 176-536 153-613 (615)
58 3mkq_A Coatomer beta'-subunit; 100.0 8.4E-36 2.9E-40 329.8 40.1 334 173-535 3-384 (814)
59 1sq9_A Antiviral protein SKI8; 100.0 1.7E-36 6E-41 306.3 31.1 292 174-493 7-396 (397)
60 3i2n_A WD repeat-containing pr 100.0 1.7E-36 5.8E-41 301.4 30.1 290 229-536 13-352 (357)
61 1pgu_A Actin interacting prote 100.0 3.8E-36 1.3E-40 321.4 35.0 328 180-535 15-364 (615)
62 3sfz_A APAF-1, apoptotic pepti 100.0 1E-36 3.5E-41 352.5 32.3 328 177-535 876-1247(1249)
63 2oaj_A Protein SNI1; WD40 repe 100.0 3.2E-36 1.1E-40 334.6 34.9 331 182-535 97-659 (902)
64 3odt_A Protein DOA1; ubiquitin 100.0 2.5E-35 8.6E-40 287.3 37.2 280 227-536 11-295 (313)
65 1r5m_A SIR4-interacting protei 100.0 1E-35 3.5E-40 302.7 35.8 297 216-535 26-359 (425)
66 3ei3_B DNA damage-binding prot 100.0 1.4E-35 4.9E-40 298.5 36.1 291 173-492 63-382 (383)
67 3zwl_B Eukaryotic translation 100.0 2.4E-35 8.1E-40 294.1 36.3 294 177-500 26-354 (369)
68 3dw8_B Serine/threonine-protei 100.0 5.6E-36 1.9E-40 307.6 32.2 294 232-534 26-443 (447)
69 3k26_A Polycomb protein EED; W 100.0 6.4E-36 2.2E-40 298.1 31.5 292 177-491 12-365 (366)
70 3odt_A Protein DOA1; ubiquitin 100.0 4.8E-35 1.6E-39 285.3 36.6 299 169-500 4-304 (313)
71 3vl1_A 26S proteasome regulato 100.0 2.4E-36 8.1E-41 307.9 28.2 281 235-536 57-364 (420)
72 4e54_B DNA damage-binding prot 100.0 3.4E-36 1.2E-40 308.8 29.3 298 172-495 108-433 (435)
73 2pm9_A Protein WEB1, protein t 100.0 1.3E-36 4.6E-41 309.0 25.8 295 181-493 65-415 (416)
74 1yfq_A Cell cycle arrest prote 100.0 3.1E-35 1.1E-39 290.8 34.7 285 229-529 6-315 (342)
75 3i2n_A WD repeat-containing pr 100.0 8.5E-36 2.9E-40 296.3 30.1 299 176-495 11-356 (357)
76 2pm7_B Protein transport prote 100.0 2.2E-35 7.6E-40 286.7 31.9 254 178-444 4-284 (297)
77 4gga_A P55CDC, cell division c 100.0 2.7E-34 9.2E-39 293.2 39.4 277 237-535 108-393 (420)
78 1k8k_C P40, ARP2/3 complex 41 100.0 1.7E-35 5.9E-40 296.0 29.9 295 178-496 3-365 (372)
79 4aez_A CDC20, WD repeat-contai 100.0 7.9E-35 2.7E-39 295.3 35.0 273 210-500 108-388 (401)
80 4aez_A CDC20, WD repeat-contai 100.0 2E-34 6.8E-39 292.3 35.8 279 232-536 89-379 (401)
81 4a11_B DNA excision repair pro 100.0 2.5E-34 8.4E-39 291.0 36.3 334 175-535 35-403 (408)
82 4ggc_A P55CDC, cell division c 100.0 2.1E-33 7.1E-38 274.5 39.3 277 237-535 28-313 (318)
83 3mkq_A Coatomer beta'-subunit; 100.0 4.8E-34 1.6E-38 315.8 38.6 292 225-535 4-300 (814)
84 3f3f_A Nucleoporin SEH1; struc 100.0 1.6E-34 5.6E-39 285.1 29.7 295 228-536 5-336 (351)
85 3bg1_A Protein SEC13 homolog; 100.0 3E-35 1E-39 288.4 23.9 257 175-444 5-292 (316)
86 3jrp_A Fusion protein of prote 100.0 3.2E-34 1.1E-38 287.2 30.8 259 227-493 4-288 (379)
87 3dwl_C Actin-related protein 2 100.0 5.7E-35 1.9E-39 293.4 25.1 248 179-444 7-280 (377)
88 4h5i_A Guanine nucleotide-exch 100.0 9.7E-34 3.3E-38 283.4 32.3 287 234-535 14-341 (365)
89 4h5i_A Guanine nucleotide-exch 100.0 8.8E-35 3E-39 291.0 24.6 295 184-493 15-344 (365)
90 3dw8_B Serine/threonine-protei 100.0 9E-34 3.1E-38 291.1 32.3 287 181-490 26-444 (447)
91 3mmy_A MRNA export factor; mRN 100.0 1.8E-33 6.1E-38 280.4 33.5 293 225-534 30-343 (368)
92 3bg1_A Protein SEC13 homolog; 100.0 1.3E-34 4.5E-39 283.9 24.0 252 229-491 8-292 (316)
93 3v7d_B Cell division control p 100.0 8.5E-33 2.9E-37 285.7 38.3 279 228-536 115-420 (464)
94 1yfq_A Cell cycle arrest prote 100.0 4.8E-33 1.6E-37 275.1 32.4 283 178-489 6-321 (342)
95 3gre_A Serine/threonine-protei 100.0 1.2E-33 4E-38 289.8 27.5 293 179-489 59-437 (437)
96 2aq5_A Coronin-1A; WD40 repeat 100.0 1.9E-33 6.5E-38 285.1 28.8 284 237-535 37-340 (402)
97 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.4E-32 1.2E-36 279.7 38.5 278 226-536 110-390 (445)
98 4gga_A P55CDC, cell division c 100.0 6.2E-32 2.1E-36 275.7 39.8 270 212-501 122-404 (420)
99 1p22_A F-BOX/WD-repeat protein 100.0 2.2E-32 7.4E-37 280.4 36.1 271 231-536 130-413 (435)
100 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-32 3.8E-37 279.5 30.7 290 186-494 37-344 (402)
101 3f3f_A Nucleoporin SEH1; struc 100.0 8.7E-33 3E-37 272.7 28.7 267 175-452 3-344 (351)
102 3jrp_A Fusion protein of prote 100.0 1.4E-32 4.8E-37 275.3 28.9 261 176-449 4-291 (379)
103 4ggc_A P55CDC, cell division c 100.0 5.5E-31 1.9E-35 257.3 37.4 276 187-494 29-317 (318)
104 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.7E-31 5.7E-36 275.1 33.9 285 234-535 4-389 (450)
105 1p22_A F-BOX/WD-repeat protein 100.0 2E-31 6.9E-36 273.2 31.9 277 180-498 130-420 (435)
106 2j04_B YDR362CP, TAU91; beta p 100.0 3.2E-32 1.1E-36 283.7 25.8 285 178-493 202-518 (524)
107 3lrv_A PRE-mRNA-splicing facto 100.0 1E-31 3.4E-36 266.5 27.8 269 240-533 42-329 (343)
108 3mmy_A MRNA export factor; mRN 100.0 2.7E-31 9.3E-36 264.6 30.1 293 172-491 28-345 (368)
109 3jro_A Fusion protein of prote 100.0 3.9E-32 1.3E-36 297.4 26.0 258 228-493 3-286 (753)
110 2xyi_A Probable histone-bindin 100.0 4.9E-31 1.7E-35 270.0 32.1 256 230-493 124-411 (430)
111 3vu4_A KMHSV2; beta-propeller 100.0 1.2E-30 4E-35 260.0 32.7 281 230-535 15-334 (355)
112 2xyi_A Probable histone-bindin 100.0 4.5E-31 1.5E-35 270.2 29.8 257 177-445 122-410 (430)
113 2j04_A TAU60, YPL007P, hypothe 100.0 3.9E-31 1.3E-35 269.5 28.5 294 182-526 14-350 (588)
114 1l0q_A Surface layer protein; 100.0 5.1E-30 1.7E-34 258.5 36.7 306 210-535 7-340 (391)
115 3bws_A Protein LP49; two-domai 100.0 3.6E-30 1.2E-34 263.3 34.1 329 183-536 60-431 (433)
116 3jro_A Fusion protein of prote 100.0 6.7E-31 2.3E-35 287.5 27.2 257 177-446 3-286 (753)
117 3vu4_A KMHSV2; beta-propeller 100.0 3.2E-30 1.1E-34 256.9 29.6 284 179-495 15-339 (355)
118 2j04_A TAU60, YPL007P, hypothe 100.0 4.5E-31 1.5E-35 269.0 21.7 268 231-536 12-296 (588)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.9E-29 6.6E-34 259.7 32.4 241 232-492 100-391 (450)
120 3lrv_A PRE-mRNA-splicing facto 100.0 6.8E-30 2.3E-34 253.3 27.6 261 210-490 53-331 (343)
121 1l0q_A Surface layer protein; 100.0 6.9E-29 2.3E-33 250.2 35.2 266 248-536 2-274 (391)
122 4gq1_A NUP37; propeller, trans 100.0 7.5E-30 2.6E-34 257.9 25.3 295 234-534 15-386 (393)
123 3bws_A Protein LP49; two-domai 100.0 1.7E-28 5.7E-33 250.9 34.1 279 184-492 123-432 (433)
124 2w18_A PALB2, fancn, partner a 100.0 2.7E-28 9.2E-33 234.0 29.4 285 237-536 42-356 (356)
125 4gq1_A NUP37; propeller, trans 100.0 1.9E-28 6.5E-33 247.6 26.0 245 233-491 88-388 (393)
126 2w18_A PALB2, fancn, partner a 100.0 2.7E-26 9.1E-31 220.2 25.7 244 175-443 78-355 (356)
127 1nir_A Nitrite reductase; hemo 99.9 2E-25 6.8E-30 234.2 32.2 315 190-536 144-513 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.3E-25 4.5E-30 228.3 27.2 278 216-517 94-409 (415)
129 1nir_A Nitrite reductase; hemo 99.9 7.1E-25 2.4E-29 230.0 32.4 277 241-536 144-457 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 5E-25 1.7E-29 224.0 28.8 277 235-536 63-386 (415)
131 3u4y_A Uncharacterized protein 99.9 5.3E-23 1.8E-27 202.1 32.4 280 241-536 4-303 (331)
132 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-23 4.3E-28 230.0 30.5 318 184-535 37-457 (741)
133 2ecf_A Dipeptidyl peptidase IV 99.9 2E-23 7E-28 228.3 27.9 282 234-535 36-411 (741)
134 3u4y_A Uncharacterized protein 99.9 4.3E-22 1.5E-26 195.6 33.8 275 210-494 15-306 (331)
135 1ri6_A Putative isomerase YBHE 99.9 1.2E-22 4.2E-27 200.0 28.5 269 212-491 12-307 (343)
136 1ri6_A Putative isomerase YBHE 99.9 1.3E-22 4.3E-27 199.9 28.5 274 250-535 7-306 (343)
137 1k32_A Tricorn protease; prote 99.9 2.8E-23 9.6E-28 235.5 27.0 330 178-536 47-460 (1045)
138 3vgz_A Uncharacterized protein 99.9 4.7E-22 1.6E-26 196.9 31.6 270 233-527 39-334 (353)
139 2ojh_A Uncharacterized protein 99.9 1.1E-22 3.7E-27 195.5 24.9 259 210-483 17-293 (297)
140 1xfd_A DIP, dipeptidyl aminope 99.9 5.1E-23 1.7E-27 224.5 24.6 283 235-536 17-392 (723)
141 1k32_A Tricorn protease; prote 99.9 3E-22 1E-26 227.1 31.6 316 185-536 246-636 (1045)
142 1xfd_A DIP, dipeptidyl aminope 99.9 2.2E-22 7.7E-27 219.4 28.1 310 185-524 18-427 (723)
143 1pby_B Quinohemoprotein amine 99.9 4E-22 1.4E-26 195.8 26.2 263 249-536 2-309 (337)
144 3vgz_A Uncharacterized protein 99.9 4.4E-21 1.5E-25 189.9 31.9 277 184-483 41-335 (353)
145 1pby_B Quinohemoprotein amine 99.9 4.1E-22 1.4E-26 195.7 23.9 271 210-502 6-320 (337)
146 2z3z_A Dipeptidyl aminopeptida 99.9 8.7E-22 3E-26 214.2 28.1 276 235-536 82-434 (706)
147 2ojh_A Uncharacterized protein 99.9 9E-22 3.1E-26 189.0 24.7 255 253-528 17-293 (297)
148 2oit_A Nucleoporin 214KDA; NH2 99.9 2.3E-21 8E-26 197.7 28.0 216 215-446 23-279 (434)
149 3hfq_A Uncharacterized protein 99.9 8.4E-21 2.9E-25 187.9 27.0 277 212-496 13-323 (347)
150 3o4h_A Acylamino-acid-releasin 99.9 4.4E-21 1.5E-25 203.8 24.9 271 232-535 19-313 (582)
151 3hfq_A Uncharacterized protein 99.9 3.5E-20 1.2E-24 183.4 28.2 276 250-536 4-316 (347)
152 2z3z_A Dipeptidyl aminopeptida 99.9 6.6E-21 2.3E-25 207.2 24.8 278 236-535 27-389 (706)
153 3scy_A Hypothetical bacterial 99.9 1.2E-19 4.2E-24 180.6 29.5 277 248-536 13-336 (361)
154 3o4h_A Acylamino-acid-releasin 99.9 2.2E-20 7.4E-25 198.5 22.7 274 183-492 21-315 (582)
155 2oit_A Nucleoporin 214KDA; NH2 99.9 1.4E-19 4.8E-24 184.5 27.5 245 183-443 36-331 (434)
156 3scy_A Hypothetical bacterial 99.8 3.4E-19 1.2E-23 177.3 28.0 273 211-496 23-343 (361)
157 1jmx_B Amine dehydrogenase; ox 99.8 1.5E-19 5E-24 178.4 24.5 282 189-502 5-335 (349)
158 1jmx_B Amine dehydrogenase; ox 99.8 1.4E-19 4.7E-24 178.6 23.9 236 287-536 4-324 (349)
159 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.4E-19 5E-24 180.5 23.5 276 250-536 4-340 (365)
160 1z68_A Fibroblast activation p 99.8 1.3E-19 4.4E-24 197.5 21.8 312 188-535 20-441 (719)
161 1z68_A Fibroblast activation p 99.8 1.3E-19 4.5E-24 197.4 20.1 281 239-535 20-389 (719)
162 3pe7_A Oligogalacturonate lyas 99.8 6E-18 2.1E-22 169.8 25.7 278 240-535 41-380 (388)
163 4a5s_A Dipeptidyl peptidase 4 99.8 1.8E-17 6.1E-22 181.0 27.6 247 235-496 17-357 (740)
164 4a5s_A Dipeptidyl peptidase 4 99.8 2.4E-17 8.3E-22 180.0 28.1 243 184-449 17-357 (740)
165 3pe7_A Oligogalacturonate lyas 99.8 2.9E-17 1E-21 164.7 24.8 282 189-490 41-380 (388)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.6E-17 5.5E-22 165.6 22.5 243 235-493 40-342 (365)
167 3c5m_A Oligogalacturonate lyas 99.8 1.9E-17 6.4E-22 166.4 20.5 289 184-495 36-387 (396)
168 3azo_A Aminopeptidase; POP fam 99.8 1.1E-16 3.7E-21 172.6 26.4 287 230-533 19-363 (662)
169 3fvz_A Peptidyl-glycine alpha- 99.8 3.1E-16 1.1E-20 153.9 26.7 246 234-493 23-323 (329)
170 2oiz_A Aromatic amine dehydrog 99.7 3E-16 1E-20 156.0 26.0 278 213-515 29-357 (361)
171 1q7f_A NHL, brain tumor CG1071 99.7 2E-15 6.9E-20 144.7 30.9 242 231-494 26-282 (286)
172 2oiz_A Aromatic amine dehydrog 99.7 6.7E-16 2.3E-20 153.5 26.8 260 256-536 29-333 (361)
173 3c5m_A Oligogalacturonate lyas 99.7 3.5E-17 1.2E-21 164.4 17.7 275 235-535 36-380 (396)
174 1q7f_A NHL, brain tumor CG1071 99.7 2.4E-15 8.4E-20 144.1 29.6 239 280-535 27-278 (286)
175 3azo_A Aminopeptidase; POP fam 99.7 2.3E-16 7.9E-21 170.0 24.7 289 179-495 19-372 (662)
176 3fvz_A Peptidyl-glycine alpha- 99.7 3.1E-15 1.1E-19 146.8 27.7 243 282-536 23-321 (329)
177 2dg1_A DRP35, lactonase; beta 99.7 2.1E-15 7.3E-20 147.9 26.3 272 235-527 6-300 (333)
178 2dg1_A DRP35, lactonase; beta 99.7 6.2E-15 2.1E-19 144.6 29.2 273 186-483 8-301 (333)
179 1qks_A Cytochrome CD1 nitrite 99.7 3.4E-14 1.2E-18 148.6 34.7 309 210-535 172-536 (567)
180 2gop_A Trilobed protease; beta 99.7 1.2E-14 4.1E-19 143.3 27.3 257 236-535 16-329 (347)
181 1qks_A Cytochrome CD1 nitrite 99.7 9E-14 3.1E-18 145.5 34.3 273 247-536 166-476 (567)
182 2gop_A Trilobed protease; beta 99.7 1.7E-14 5.9E-19 142.2 26.2 262 185-491 16-330 (347)
183 3dsm_A Uncharacterized protein 99.7 2.7E-14 9.3E-19 139.9 26.5 260 256-536 15-301 (328)
184 3dsm_A Uncharacterized protein 99.6 2.1E-13 7E-18 133.6 30.8 264 213-501 15-310 (328)
185 2z2n_A Virginiamycin B lyase; 99.6 2.3E-12 7.8E-17 123.7 37.3 277 234-535 14-293 (299)
186 1rwi_B Serine/threonine-protei 99.6 7.9E-14 2.7E-18 132.1 25.4 242 236-496 25-268 (270)
187 3e5z_A Putative gluconolactona 99.6 1.5E-13 5.2E-18 132.3 27.4 237 233-493 26-287 (296)
188 3e5z_A Putative gluconolactona 99.6 2.8E-13 9.7E-18 130.4 29.3 237 273-531 18-281 (296)
189 2xdw_A Prolyl endopeptidase; a 99.6 2.1E-13 7.2E-18 148.1 30.9 243 281-536 123-413 (710)
190 3no2_A Uncharacterized protein 99.6 2E-13 6.7E-18 130.1 26.8 238 247-501 4-261 (276)
191 2bkl_A Prolyl endopeptidase; m 99.6 9.7E-14 3.3E-18 150.3 26.5 272 247-536 78-396 (695)
192 2xdw_A Prolyl endopeptidase; a 99.6 9.6E-14 3.3E-18 150.8 25.7 252 181-447 122-416 (710)
193 2z2n_A Virginiamycin B lyase; 99.6 4.2E-12 1.4E-16 121.8 34.0 281 180-493 11-296 (299)
194 2bkl_A Prolyl endopeptidase; m 99.6 1.2E-13 3.9E-18 149.7 23.9 252 180-448 117-400 (695)
195 1rwi_B Serine/threonine-protei 99.6 6.7E-13 2.3E-17 125.7 24.3 238 185-447 25-266 (270)
196 2mad_H Methylamine dehydrogena 99.6 1.2E-11 4.2E-16 122.9 33.6 272 247-536 31-349 (373)
197 3no2_A Uncharacterized protein 99.6 1.7E-12 5.8E-17 123.6 26.1 211 296-524 6-230 (276)
198 2qc5_A Streptogramin B lactona 99.5 5.7E-11 1.9E-15 113.9 34.7 277 234-535 19-298 (300)
199 2mad_H Methylamine dehydrogena 99.5 2.4E-11 8.3E-16 120.7 31.9 264 216-499 48-357 (373)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.4E-11 4.9E-16 119.2 28.8 242 279-536 14-298 (314)
201 3hrp_A Uncharacterized protein 99.5 9.3E-12 3.2E-16 125.5 28.1 240 235-490 131-408 (409)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 9.3E-12 3.2E-16 120.5 26.4 240 236-492 19-299 (314)
203 1yr2_A Prolyl oligopeptidase; 99.5 5.1E-12 1.8E-16 137.8 26.7 274 247-536 117-440 (741)
204 3sjl_D Methylamine dehydrogena 99.5 2E-11 6.8E-16 120.1 26.8 273 241-536 39-362 (386)
205 3c75_H MADH, methylamine dehyd 99.5 1.5E-11 5.1E-16 123.2 26.1 274 247-536 83-401 (426)
206 2qc5_A Streptogramin B lactona 99.4 2.7E-10 9.3E-15 109.1 32.6 275 182-490 18-298 (300)
207 1yr2_A Prolyl oligopeptidase; 99.4 3.8E-12 1.3E-16 138.8 19.8 250 181-447 160-443 (741)
208 1xip_A Nucleoporin NUP159; bet 99.4 1.1E-10 3.8E-15 115.3 27.9 177 236-433 39-232 (388)
209 3hrp_A Uncharacterized protein 99.4 1.4E-10 4.7E-15 116.9 28.8 244 283-536 131-409 (409)
210 3sjl_D Methylamine dehydrogena 99.4 3.7E-11 1.3E-15 118.2 23.2 269 214-501 58-372 (386)
211 3g4e_A Regucalcin; six bladed 99.4 1.7E-10 5.8E-15 111.0 27.3 229 236-482 14-262 (297)
212 1xip_A Nucleoporin NUP159; bet 99.4 5.8E-12 2E-16 124.4 15.4 175 284-478 39-230 (388)
213 3c75_H MADH, methylamine dehyd 99.4 4.7E-11 1.6E-15 119.6 21.6 265 215-499 99-409 (426)
214 3iuj_A Prolyl endopeptidase; h 99.4 6.4E-11 2.2E-15 128.0 23.8 249 225-494 119-407 (693)
215 3g4e_A Regucalcin; six bladed 99.4 8.4E-10 2.9E-14 106.1 28.8 229 281-523 11-258 (297)
216 3q7m_A Lipoprotein YFGL, BAMB; 99.3 2.1E-09 7.1E-14 107.0 32.1 258 247-535 102-376 (376)
217 2ghs_A AGR_C_1268P; regucalcin 99.3 1.9E-09 6.5E-14 105.2 30.5 225 237-482 51-292 (326)
218 3dr2_A Exported gluconolactona 99.3 1.1E-09 3.7E-14 105.8 27.4 236 274-531 36-301 (305)
219 3dr2_A Exported gluconolactona 99.3 4.7E-10 1.6E-14 108.3 24.4 227 235-485 45-300 (305)
220 3iuj_A Prolyl endopeptidase; h 99.3 1.8E-10 6.3E-15 124.4 22.3 250 180-448 125-408 (693)
221 3q7m_A Lipoprotein YFGL, BAMB; 99.3 2.6E-09 9E-14 106.3 28.0 260 247-535 52-335 (376)
222 2ghs_A AGR_C_1268P; regucalcin 99.3 2.9E-09 1E-13 103.8 27.5 222 185-435 50-292 (326)
223 1mda_H Methylamine dehydrogena 99.3 4.8E-10 1.6E-14 110.4 21.5 264 249-536 33-345 (368)
224 2hz6_A Endoplasmic reticulum t 99.3 6.9E-13 2.4E-17 132.0 0.8 255 247-534 8-276 (369)
225 2qe8_A Uncharacterized protein 99.2 6.4E-10 2.2E-14 109.3 19.8 241 235-488 17-317 (343)
226 1kb0_A Quinohemoprotein alcoho 99.2 2.7E-09 9.1E-14 114.5 25.2 239 248-503 128-518 (677)
227 1mda_H Methylamine dehydrogena 99.2 1.5E-10 5.1E-15 114.0 14.0 260 216-502 47-356 (368)
228 1yiq_A Quinohemoprotein alcoho 99.2 5.9E-09 2E-13 112.0 26.6 272 248-536 70-504 (689)
229 1yiq_A Quinohemoprotein alcoho 99.2 4.4E-09 1.5E-13 113.1 25.3 244 248-503 121-516 (689)
230 3hxj_A Pyrrolo-quinoline quino 99.2 2.8E-09 9.5E-14 103.7 21.1 261 236-535 61-322 (330)
231 1kb0_A Quinohemoprotein alcoho 99.2 3.9E-09 1.3E-13 113.2 23.8 270 249-536 78-506 (677)
232 2hz6_A Endoplasmic reticulum t 99.1 2.5E-11 8.5E-16 120.7 4.1 186 296-500 10-200 (369)
233 2qe8_A Uncharacterized protein 99.1 3.1E-09 1.1E-13 104.4 18.8 242 184-442 17-318 (343)
234 1fwx_A Nitrous oxide reductase 99.1 5.1E-09 1.8E-13 107.3 20.3 241 247-494 100-433 (595)
235 2ece_A 462AA long hypothetical 99.1 1.7E-08 5.7E-13 100.0 22.1 231 247-480 94-399 (462)
236 1npe_A Nidogen, entactin; glyc 99.0 6.2E-07 2.1E-11 84.4 29.0 238 249-501 2-247 (267)
237 1npe_A Nidogen, entactin; glyc 99.0 9.1E-07 3.1E-11 83.2 29.2 205 235-453 36-246 (267)
238 2iwa_A Glutamine cyclotransfer 98.9 2.3E-07 8E-12 86.3 21.9 206 318-535 12-235 (266)
239 1fwx_A Nitrous oxide reductase 98.9 2.4E-07 8.3E-12 95.0 23.0 224 293-525 100-406 (595)
240 1kv9_A Type II quinohemoprotei 98.9 3.2E-07 1.1E-11 98.3 24.9 269 249-536 67-487 (668)
241 3hxj_A Pyrrolo-quinoline quino 98.8 5E-08 1.7E-12 94.7 15.9 251 249-535 31-282 (330)
242 2ece_A 462AA long hypothetical 98.8 7.9E-07 2.7E-11 88.1 24.1 213 210-433 101-399 (462)
243 4a2l_A BT_4663, two-component 98.8 1.4E-05 4.9E-10 87.5 36.8 236 237-495 175-439 (795)
244 2fp8_A Strictosidine synthase; 98.8 1.6E-06 5.4E-11 84.0 25.8 239 237-492 21-313 (322)
245 3nok_A Glutaminyl cyclase; bet 98.8 5.4E-07 1.8E-11 82.9 20.1 194 317-525 45-254 (268)
246 4a2l_A BT_4663, two-component 98.8 3E-05 1E-09 85.0 37.8 299 208-532 323-655 (795)
247 3nol_A Glutamine cyclotransfer 98.8 6E-07 2E-11 82.6 20.1 193 318-524 34-243 (262)
248 2fp8_A Strictosidine synthase; 98.8 2.5E-06 8.7E-11 82.6 25.4 235 284-536 20-312 (322)
249 2ad6_A Methanol dehydrogenase 98.8 3.2E-06 1.1E-10 88.6 27.5 236 248-502 115-504 (571)
250 1w6s_A Methanol dehydrogenase 98.8 4.3E-06 1.5E-10 87.7 28.5 271 249-536 63-502 (599)
251 2iwa_A Glutamine cyclotransfer 98.8 1.4E-06 4.7E-11 81.1 21.6 197 285-493 23-238 (266)
252 2ad6_A Methanol dehydrogenase 98.8 5.3E-06 1.8E-10 86.9 28.8 269 249-536 63-493 (571)
253 3nol_A Glutamine cyclotransfer 98.8 6.2E-07 2.1E-11 82.5 18.7 191 280-482 38-245 (262)
254 1kv9_A Type II quinohemoprotei 98.7 1.1E-06 3.9E-11 93.9 23.2 241 248-502 117-498 (668)
255 2p4o_A Hypothetical protein; p 98.7 1.1E-05 3.7E-10 77.5 27.3 229 235-483 32-279 (306)
256 3mbr_X Glutamine cyclotransfer 98.7 2.6E-06 9E-11 77.6 21.3 195 317-525 11-223 (243)
257 3v64_C Agrin; beta propeller, 98.7 4.5E-05 1.5E-09 74.7 31.6 208 235-453 73-283 (349)
258 3v65_B Low-density lipoprotein 98.7 2.7E-05 9.1E-10 77.4 30.1 209 234-453 115-326 (386)
259 1w6s_A Methanol dehydrogenase 98.7 1.1E-05 3.8E-10 84.6 28.2 237 251-502 124-513 (599)
260 3v9f_A Two-component system se 98.7 4.7E-05 1.6E-09 83.2 34.3 237 233-494 311-570 (781)
261 3v9f_A Two-component system se 98.6 0.00011 3.8E-09 80.2 36.0 260 208-493 326-612 (781)
262 1ijq_A LDL receptor, low-densi 98.6 0.00017 5.9E-09 69.4 32.3 234 250-499 3-245 (316)
263 3v64_C Agrin; beta propeller, 98.6 7.5E-05 2.6E-09 73.1 29.8 244 236-500 35-283 (349)
264 1k3i_A Galactose oxidase precu 98.6 4.7E-06 1.6E-10 89.2 22.0 273 239-526 190-530 (656)
265 3p5b_L Low density lipoprotein 98.6 0.00022 7.4E-09 71.2 32.5 235 250-500 85-328 (400)
266 1flg_A Protein (quinoprotein e 98.6 3.3E-05 1.1E-09 81.0 27.6 239 248-502 117-526 (582)
267 3mbr_X Glutamine cyclotransfer 98.6 1.1E-05 3.7E-10 73.6 20.7 193 275-481 12-223 (243)
268 3nok_A Glutaminyl cyclase; bet 98.5 1.7E-05 5.8E-10 72.9 21.8 178 237-433 57-253 (268)
269 3v65_B Low-density lipoprotein 98.5 0.0001 3.4E-09 73.2 29.6 234 250-500 89-326 (386)
270 3tc9_A Hypothetical hydrolase; 98.5 3.8E-05 1.3E-09 77.5 26.0 247 236-490 138-428 (430)
271 1flg_A Protein (quinoprotein e 98.5 4.4E-05 1.5E-09 80.0 27.4 271 250-536 70-515 (582)
272 4hw6_A Hypothetical protein, I 98.5 5.1E-05 1.8E-09 76.5 26.2 244 284-536 140-432 (433)
273 1ijq_A LDL receptor, low-densi 98.5 0.00024 8.2E-09 68.4 29.9 212 234-453 29-246 (316)
274 3tc9_A Hypothetical hydrolase; 98.5 3.6E-05 1.2E-09 77.6 24.8 244 284-536 138-429 (430)
275 2p4o_A Hypothetical protein; p 98.5 0.00034 1.2E-08 66.9 30.1 224 283-525 32-276 (306)
276 3p5b_L Low density lipoprotein 98.4 0.00056 1.9E-08 68.1 32.2 232 216-453 93-328 (400)
277 4hw6_A Hypothetical protein, I 98.4 7.1E-05 2.4E-09 75.5 24.7 246 236-490 140-431 (433)
278 3qqz_A Putative uncharacterize 98.4 0.00033 1.1E-08 64.6 26.2 207 277-490 21-251 (255)
279 3kya_A Putative phosphatase; s 98.4 0.00016 5.5E-09 73.2 25.5 257 236-500 140-483 (496)
280 3qqz_A Putative uncharacterize 98.3 0.00039 1.3E-08 64.2 25.6 197 231-443 23-251 (255)
281 2xe4_A Oligopeptidase B; hydro 98.3 9.7E-05 3.3E-09 80.2 25.1 199 185-397 175-398 (751)
282 3m0c_C LDL receptor, low-densi 98.3 0.00071 2.4E-08 73.2 31.3 236 250-500 397-640 (791)
283 3sov_A LRP-6, low-density lipo 98.3 0.001 3.6E-08 63.9 29.3 207 235-453 35-246 (318)
284 1k3i_A Galactose oxidase precu 98.3 1.1E-05 3.9E-10 86.2 16.7 251 216-481 220-530 (656)
285 3kya_A Putative phosphatase; s 98.3 0.0004 1.4E-08 70.4 25.9 248 284-536 140-474 (496)
286 3s94_A LRP-6, low-density lipo 98.2 0.004 1.4E-07 65.6 34.2 204 234-449 39-247 (619)
287 3m0c_C LDL receptor, low-densi 98.2 0.0015 5.2E-08 70.6 31.2 211 234-452 423-639 (791)
288 3sov_A LRP-6, low-density lipo 98.2 0.001 3.5E-08 63.9 26.9 236 250-500 6-246 (318)
289 2xe4_A Oligopeptidase B; hydro 98.2 0.00021 7.3E-09 77.5 24.6 192 236-443 175-398 (751)
290 2xbg_A YCF48-like protein; pho 98.2 0.0055 1.9E-07 59.0 32.0 274 234-534 35-319 (327)
291 3amr_A 3-phytase; beta-propell 98.2 0.00087 3E-08 64.3 24.3 198 247-453 39-272 (355)
292 1n7d_A LDL receptor, low-densi 98.0 3.9E-05 1.3E-09 82.3 13.1 228 257-500 385-622 (699)
293 1n7d_A LDL receptor, low-densi 98.0 5.1E-05 1.7E-09 81.4 13.4 212 235-452 406-621 (699)
294 4a0p_A LRP6, LRP-6, low-densit 98.0 0.019 6.6E-07 60.5 32.6 232 250-499 8-244 (628)
295 2p9w_A MAL S 1 allergenic prot 98.0 0.0033 1.1E-07 59.7 23.8 205 278-492 8-265 (334)
296 2p9w_A MAL S 1 allergenic prot 97.9 0.0086 2.9E-07 56.9 26.4 202 238-451 16-271 (334)
297 4a0p_A LRP6, LRP-6, low-densit 97.9 0.04 1.4E-06 58.1 39.6 205 235-452 37-244 (628)
298 2xbg_A YCF48-like protein; pho 97.9 0.0099 3.4E-07 57.2 26.4 239 234-490 79-320 (327)
299 3s94_A LRP-6, low-density lipo 97.9 0.042 1.4E-06 57.8 35.6 158 235-401 84-245 (619)
300 3ei3_A DNA damage-binding prot 97.8 0.029 9.9E-07 63.3 32.5 285 233-536 552-912 (1158)
301 3amr_A 3-phytase; beta-propell 97.7 0.0054 1.8E-07 58.8 20.1 185 338-536 41-262 (355)
302 2g8s_A Glucose/sorbosone dehyd 97.5 0.073 2.5E-06 51.7 27.3 234 236-479 19-340 (353)
303 3sre_A PON1, serum paraoxonase 97.4 0.02 6.8E-07 55.5 21.2 198 236-443 51-296 (355)
304 3ei3_A DNA damage-binding prot 97.4 0.15 5.3E-06 57.5 30.6 297 214-533 581-951 (1158)
305 2xzh_A Clathrin heavy chain 1; 97.4 0.1 3.5E-06 49.2 30.3 254 258-533 49-328 (365)
306 2vpj_A Kelch-like protein 12; 97.3 0.0098 3.4E-07 56.3 17.9 229 247-493 14-279 (301)
307 2ism_A Putative oxidoreductase 97.3 0.12 4.1E-06 50.1 26.0 230 236-479 32-332 (352)
308 2vpj_A Kelch-like protein 12; 97.3 0.016 5.5E-07 54.8 19.0 221 296-535 16-276 (301)
309 2xn4_A Kelch-like protein 2; s 97.3 0.017 5.8E-07 54.6 18.7 229 248-494 16-278 (302)
310 2xzh_A Clathrin heavy chain 1; 97.2 0.16 5.5E-06 47.9 25.0 219 214-445 86-332 (365)
311 2ism_A Putative oxidoreductase 97.2 0.071 2.4E-06 51.8 22.1 230 183-433 30-333 (352)
312 3ii7_A Kelch-like protein 7; p 97.2 0.029 9.9E-07 53.1 18.9 223 296-536 13-271 (306)
313 2xn4_A Kelch-like protein 2; s 97.1 0.024 8.2E-07 53.6 18.2 222 296-536 17-275 (302)
314 3ii7_A Kelch-like protein 7; p 97.0 0.035 1.2E-06 52.6 18.0 227 249-493 13-273 (306)
315 3a9g_A Putative uncharacterize 97.0 0.29 1E-05 47.4 27.5 231 236-480 30-330 (354)
316 3sre_A PON1, serum paraoxonase 96.9 0.059 2E-06 52.1 18.9 166 316-492 41-252 (355)
317 4asc_A Kelch repeat and BTB do 96.9 0.045 1.5E-06 52.1 17.8 224 250-493 7-278 (315)
318 3pbp_A Nucleoporin NUP82; beta 96.9 0.12 4.1E-06 50.6 20.3 142 296-441 33-208 (452)
319 1zgk_A Kelch-like ECH-associat 96.9 0.029 9.8E-07 53.3 16.0 228 247-493 24-288 (308)
320 3ott_A Two-component system se 96.9 0.71 2.4E-05 49.8 33.6 228 236-491 192-447 (758)
321 1bpo_A Protein (clathrin); cla 96.8 0.43 1.5E-05 46.9 33.0 255 257-533 47-327 (494)
322 1zgk_A Kelch-like ECH-associat 96.8 0.05 1.7E-06 51.6 16.8 221 296-535 26-285 (308)
323 2uvk_A YJHT; unknown function, 96.8 0.056 1.9E-06 52.4 17.5 241 247-500 19-350 (357)
324 1bpo_A Protein (clathrin); cla 96.8 0.48 1.6E-05 46.5 31.8 263 215-496 48-335 (494)
325 4asc_A Kelch repeat and BTB do 96.7 0.16 5.4E-06 48.2 20.0 182 297-493 7-222 (315)
326 3a9g_A Putative uncharacterize 96.7 0.23 7.8E-06 48.1 21.0 233 183-433 28-330 (354)
327 2be1_A Serine/threonine-protei 96.5 0.42 1.4E-05 45.7 21.2 190 296-497 11-236 (339)
328 1xi4_A Clathrin heavy chain; a 96.5 0.44 1.5E-05 53.9 23.4 253 258-532 48-326 (1630)
329 1tl2_A L10, protein (tachylect 96.5 0.073 2.5E-06 47.2 14.0 134 296-441 5-159 (236)
330 2woz_A Kelch repeat and BTB do 96.4 0.15 5.3E-06 48.3 17.9 225 250-494 18-289 (318)
331 2be1_A Serine/threonine-protei 96.4 0.11 3.7E-06 49.8 16.0 192 248-450 10-236 (339)
332 3pbp_A Nucleoporin NUP82; beta 96.4 0.43 1.5E-05 46.7 20.1 148 338-488 33-208 (452)
333 3s25_A Hypothetical 7-bladed b 96.2 0.85 2.9E-05 42.9 23.1 196 218-445 38-255 (302)
334 1cru_A Protein (soluble quinop 96.2 1.2 4.1E-05 44.6 29.1 103 236-344 28-162 (454)
335 2woz_A Kelch repeat and BTB do 96.1 0.44 1.5E-05 45.1 18.9 173 306-494 25-233 (318)
336 3b7f_A Glycosyl hydrolase, BNR 96.1 1.2 4.1E-05 43.6 27.4 189 248-442 22-259 (394)
337 1tl2_A L10, protein (tachylect 96.0 0.069 2.4E-06 47.3 11.2 145 283-438 41-203 (236)
338 3s25_A Hypothetical 7-bladed b 95.8 1.3 4.5E-05 41.6 25.4 210 247-494 24-257 (302)
339 3ott_A Two-component system se 95.7 2.9 9.9E-05 44.9 36.0 227 235-492 103-352 (758)
340 3sbq_A Nitrous-oxide reductase 95.7 0.69 2.3E-05 46.9 18.3 79 367-445 322-408 (638)
341 1xi4_A Clathrin heavy chain; a 95.5 0.61 2.1E-05 52.7 18.8 219 214-445 85-331 (1630)
342 3das_A Putative oxidoreductase 95.3 2.1 7.3E-05 41.0 23.7 235 183-433 31-326 (347)
343 2uvk_A YJHT; unknown function, 95.2 0.71 2.4E-05 44.4 17.1 140 305-452 168-349 (357)
344 2g8s_A Glucose/sorbosone dehyd 95.0 2.7 9.3E-05 40.4 25.9 145 283-431 18-214 (353)
345 3b7f_A Glycosyl hydrolase, BNR 94.7 3.4 0.00012 40.3 26.7 160 234-396 54-259 (394)
346 1cru_A Protein (soluble quinop 94.4 2.2 7.5E-05 42.7 18.4 110 275-387 19-162 (454)
347 2cn3_A Xyloglucanase, beta-1,4 94.2 7 0.00024 41.8 25.8 106 284-389 24-153 (737)
348 3das_A Putative oxidoreductase 94.2 4 0.00014 39.0 26.6 201 236-445 33-292 (347)
349 2zwa_A Leucine carboxyl methyl 94.2 0.95 3.3E-05 48.2 16.1 194 296-494 399-637 (695)
350 1sqj_A OXG-RCBH, oligoxylogluc 93.2 11 0.00037 40.7 23.7 151 282-435 14-190 (789)
351 2zwa_A Leucine carboxyl methyl 92.4 1.6 5.6E-05 46.4 14.2 149 247-400 451-636 (695)
352 3qhy_B Beta-lactamase inhibito 89.9 12 0.00041 34.5 21.3 185 234-446 62-247 (282)
353 3sbq_A Nitrous-oxide reductase 87.9 4.4 0.00015 41.1 11.7 101 391-493 299-409 (638)
354 3q6k_A 43.2 kDa salivary prote 85.2 28 0.00096 33.6 16.6 141 348-492 124-306 (381)
355 1sqj_A OXG-RCBH, oligoxylogluc 82.1 59 0.002 34.9 23.7 149 234-389 14-190 (789)
356 2cn3_A Xyloglucanase, beta-1,4 77.0 80 0.0027 33.5 29.3 106 235-346 23-153 (737)
357 3qhy_B Beta-lactamase inhibito 76.9 45 0.0015 30.5 25.4 226 235-496 24-250 (282)
358 3q6k_A 43.2 kDa salivary prote 76.5 56 0.0019 31.4 21.2 167 306-479 124-341 (381)
359 2wg3_C Hedgehog-interacting pr 73.0 77 0.0026 31.4 25.8 234 184-433 14-354 (463)
360 1suu_A DNA gyrase subunit A; t 72.6 62 0.0021 30.1 26.0 194 247-445 7-231 (312)
361 4gq2_M Nucleoporin NUP120; bet 71.9 1.2E+02 0.0042 33.2 22.3 38 326-364 237-274 (950)
362 3no0_A DNA gyrase subunit A; D 68.8 70 0.0024 29.2 22.2 199 234-444 23-245 (276)
363 4hvt_A Ritya.17583.B, post-pro 67.2 1.3E+02 0.0045 31.7 16.8 195 331-536 136-378 (711)
364 3uc1_A DNA gyrase subunit A; D 64.7 93 0.0032 29.1 22.6 204 235-444 42-278 (327)
365 3a0f_A Xyloglucanase; beta-pro 63.0 1.6E+02 0.0055 31.3 22.3 154 233-390 19-203 (763)
366 4gq2_M Nucleoporin NUP120; bet 62.0 20 0.00069 39.4 8.7 39 415-453 236-274 (950)
367 1wp5_A Topoisomerase IV; broke 54.4 1.4E+02 0.0048 27.9 24.7 194 247-445 4-225 (323)
368 3a0f_A Xyloglucanase; beta-pro 48.7 2.7E+02 0.0092 29.5 29.3 154 281-436 19-203 (763)
369 4fhn_B Nucleoporin NUP120; pro 45.9 50 0.0017 37.2 8.7 38 326-364 239-276 (1139)
370 3kci_A Probable E3 ubiquitin-p 43.0 2.3E+02 0.0077 27.0 24.4 200 235-445 105-345 (389)
371 2wg3_C Hedgehog-interacting pr 42.8 2.6E+02 0.0088 27.6 29.3 238 236-480 15-354 (463)
372 3uc1_A DNA gyrase subunit A; D 42.5 2.1E+02 0.0074 26.6 26.3 238 247-492 2-279 (327)
373 4fhn_B Nucleoporin NUP120; pro 41.0 4.2E+02 0.014 29.6 16.3 38 416-453 239-276 (1139)
374 3no0_A DNA gyrase subunit A; D 30.7 3E+02 0.01 24.8 22.0 202 282-492 23-246 (276)
375 1q47_A Semaphorin 3A; beta pro 29.8 2.9E+02 0.0098 27.5 10.4 73 236-309 405-487 (495)
376 3f7f_A Nucleoporin NUP120; nuc 26.7 67 0.0023 33.8 5.1 38 415-454 222-259 (729)
377 4a9v_A PHOX; hydrolase, beta-p 25.8 1.9E+02 0.0065 29.5 8.1 60 326-387 477-550 (592)
378 1zi0_A DNA gyrase subunit A; b 24.6 4.1E+02 0.014 24.3 28.3 195 247-445 2-226 (307)
379 1suu_A DNA gyrase subunit A; t 24.1 4.2E+02 0.014 24.3 24.5 159 235-399 47-231 (312)
380 1zi0_A DNA gyrase subunit A; b 23.6 4.2E+02 0.015 24.2 25.3 204 235-444 42-276 (307)
381 3ol2_B Plexin-B1; beta-propell 23.5 3.2E+02 0.011 27.5 9.3 73 235-309 387-461 (528)
382 3f7f_A Nucleoporin NUP120; nuc 23.1 1.2E+02 0.0041 31.9 6.2 35 285-322 224-258 (729)
383 2zux_A YESW protein; beta-prop 22.5 6.2E+02 0.021 25.7 27.0 176 281-472 177-424 (591)
384 3zs9_C Golgi to ER traffic pro 21.1 1E+02 0.0035 18.3 3.0 20 4-23 2-21 (38)
385 4a9v_A PHOX; hydrolase, beta-p 20.4 4.1E+02 0.014 27.1 9.3 59 283-343 476-548 (592)
386 3zwu_A Alkaline phosphatase PH 20.0 2.3E+02 0.0079 29.0 7.6 55 330-385 481-548 (592)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.7e-43 Score=377.16 Aligned_cols=345 Identities=14% Similarity=0.127 Sum_probs=265.0
Q ss_pred cccceecccccceeeeecCCCCcccccc-ccccccccccc---------------------------------c----cc
Q 009380 174 NLGFVIKDEFNGFKTCKDEGLGVGSCDL-IKGVVKTEKIE---------------------------------V----GS 215 (536)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~~~~~~~~---------------------------------~----dg 215 (536)
.....+.+|.+.|.++.|+|+|++++.. .++.+++|... . .+
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~ 129 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 129 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence 3456789999999999999999999854 12223333210 0 02
Q ss_pred eEEecccccCccccccccCCceEEEEEEecCCcc-EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC
Q 009380 216 CVDIGSLTLKPENIARIMPGRITQMKFLPCSDVR-MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC 294 (536)
Q Consensus 216 ~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 294 (536)
.|.+|+. ......+.+|.+.|++++|+| ++. .|++|+.|++|++||... ......+.+|...|.+++|+|++
T Consensus 130 ~v~~wd~-~~~~~~l~gh~~~v~~v~f~p--~~~~~l~s~s~D~~v~lwd~~~----~~~~~~l~~H~~~V~~v~fspdg 202 (611)
T 1nr0_A 130 HVFLFDT-GTSNGNLTGQARAMNSVDFKP--SRPFRIISGSDDNTVAIFEGPP----FKFKSTFGEHTKFVHSVRYNPDG 202 (611)
T ss_dssp EEEETTT-CCBCBCCCCCSSCEEEEEECS--SSSCEEEEEETTSCEEEEETTT----BEEEEEECCCSSCEEEEEECTTS
T ss_pred EEEEeeC-CCCcceecCCCCCceEEEECC--CCCeEEEEEeCCCeEEEEECCC----CeEeeeeccccCceEEEEECCCC
Confidence 3444442 122223456778888888888 765 699999999999999876 67788899999999999999998
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEee--------cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccce-----
Q 009380 295 LSKIFTSCYDGLIRLMDAEKEVFDLVY--------SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSAT----- 361 (536)
Q Consensus 295 ~~~l~s~s~dg~I~vwd~~~~~~~~~~--------~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~----- 361 (536)
.+|++++.|++|++||+.++.....+ +|...|.+++|+|++ .+|++++.|++|++||+++++.+.
T Consensus 203 -~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 203 -SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp -SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred -CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 99999999999999999988766554 688999999999998 899999999999999998876543
Q ss_pred --------------------------------------eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 009380 362 --------------------------------------EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD 403 (536)
Q Consensus 362 --------------------------------------~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~ 403 (536)
.+.+|...|.+++|+|++ .+|++++.|++|++||+.++...
T Consensus 281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE
T ss_pred CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcee
Confidence 234789999999999987 79999999999999999864310
Q ss_pred CCC---------------------------------------------------c-------------------------
Q 009380 404 KPE---------------------------------------------------P------------------------- 407 (536)
Q Consensus 404 ~~~---------------------------------------------------~------------------------- 407 (536)
... +
T Consensus 360 ~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~ 439 (611)
T 1nr0_A 360 RVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 439 (611)
T ss_dssp ECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEET
T ss_pred eecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeC
Confidence 000 0
Q ss_pred --ceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc--eEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380 408 --MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--SMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR 483 (536)
Q Consensus 408 --~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg 483 (536)
.....|...+.+++|+|+|++|++++.|++|++||+.+.... ....|. ..+ ..++|+|+|++|++++.|+
T Consensus 440 ~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~----~~v--~~v~fspdg~~las~s~d~ 513 (611)
T 1nr0_A 440 GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP----AEI--TSVAFSNNGAFLVATDQSR 513 (611)
T ss_dssp TEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECS----SCE--EEEEECTTSSEEEEEETTS
T ss_pred CceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCC----Cce--EEEEECCCCCEEEEEcCCC
Confidence 000123456789999999999999999999999999765432 222222 223 3478999999999999999
Q ss_pred cEEEEcCCc-ccccee-ccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 484 TVEVISPAQ-RRSVAT-LQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 484 ~I~v~d~~~-~~~~~~-l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
.|++|++.+ ++.+.. +...|...+ ..++|+| ++.+||+|+.||.|+||+++
T Consensus 514 ~v~~w~~~~~~~~~~~~~~~~H~~~V-~~v~fsp-dg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 514 KVIPYSVANNFELAHTNSWTFHTAKV-ACVSWSP-DNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp CEEEEEGGGTTEESCCCCCCCCSSCE-EEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred CEEEEEcCCCCceeeeeeeeecccce-eEEEECC-CCCEEEEEECCCcEEEEECC
Confidence 999999987 555443 233244444 4689999 67999999999999999974
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-43 Score=358.63 Aligned_cols=290 Identities=16% Similarity=0.244 Sum_probs=256.2
Q ss_pred ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC
Q 009380 226 PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG 305 (536)
Q Consensus 226 ~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg 305 (536)
....+.+|.+.|++++|+| ++.+|++|+.||+|+|||+.+ +.....+.+|...|.+++|+|++ .+|++|+.|+
T Consensus 100 ~~~~l~gh~~~V~~~~~~p--~~~~l~s~s~Dg~i~vwd~~~----~~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~D~ 172 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHP--VFSVMVSASEDATIKVWDYET----GDFERTLKGHTDSVQDISFDHSG-KLLASCSADM 172 (410)
T ss_dssp CSCEEECCSSCEEEEEECS--SSSEEEEEESSSCEEEEETTT----CCCCEEECCCSSCEEEEEECTTS-SEEEEEETTS
T ss_pred ceEeecccCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC----CcEEEEEeccCCcEEEEEEcCCC-CEEEEEeCCC
Confidence 3455688999999999999 999999999999999999998 67788999999999999999998 9999999999
Q ss_pred eEEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEE
Q 009380 306 LIRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMA 384 (536)
Q Consensus 306 ~I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~ 384 (536)
+|++||+.++.... +.+|...|.+++|+|++ ++|++|+.|++|++||++++.++..+.+|...|.++.|+|++ .+|+
T Consensus 173 ~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~ 250 (410)
T 1vyh_C 173 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIA 250 (410)
T ss_dssp CCCEEETTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-SEEE
T ss_pred eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC-CEEE
Confidence 99999999876654 45788999999999998 899999999999999999999999999999999999999987 7999
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC--------------------CCeEEEEeCCCcEEEEeCC
Q 009380 385 TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS--------------------GSSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 385 s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~--------------------g~~l~t~s~dg~I~iwd~~ 444 (536)
+|+.|+.|++||++++. ....+..|...|.+++|+|+ |.+|++|+.|+.|++||++
T Consensus 251 s~s~D~~v~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~ 326 (410)
T 1vyh_C 251 SCSNDQTVRVWVVATKE----CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326 (410)
T ss_dssp EEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred EEcCCCeEEEEECCCCc----eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 99999999999998853 44456689999999999996 6789999999999999999
Q ss_pred CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEE
Q 009380 445 NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA 524 (536)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasg 524 (536)
++..+..+... ..++.. +.|+|++.+|++|+.|+.|++||+.+++++..+.+|...+ ..++|+| ++.+|++|
T Consensus 327 ~~~~~~~~~~h---~~~v~~--v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v--~~l~~~~-~~~~l~sg 398 (410)
T 1vyh_C 327 TGMCLMTLVGH---DNWVRG--VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV--TSLDFHK-TAPYVVTG 398 (410)
T ss_dssp TTEEEEEEECC---SSCEEE--EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCE--EEEEECS-SSSCEEEE
T ss_pred CCceEEEEECC---CCcEEE--EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcE--EEEEEcC-CCCEEEEE
Confidence 98877776422 223433 7799999999999999999999999999999998766554 4688999 56899999
Q ss_pred ccCCeEEEEecC
Q 009380 525 TGGGQVYVWTSD 536 (536)
Q Consensus 525 s~Dg~v~iW~~d 536 (536)
+.||.|+||++.
T Consensus 399 s~D~~i~vW~~r 410 (410)
T 1vyh_C 399 SVDQTVKVWECR 410 (410)
T ss_dssp ETTSEEEEEC--
T ss_pred eCCCcEEEEeCC
Confidence 999999999963
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.4e-43 Score=346.80 Aligned_cols=290 Identities=13% Similarity=0.182 Sum_probs=254.3
Q ss_pred CccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC
Q 009380 225 KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD 304 (536)
Q Consensus 225 ~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d 304 (536)
.....+++|.+.|++++|+| ++.+|++|+.||+|+|||+.+ ...+..+..|...|.+++|+|++ .+|++++.|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~--d~~~l~s~s~Dg~v~iWd~~~----~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d 118 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGT--DSRLLLSASQDGKLIIWDSYT----TNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLD 118 (340)
T ss_dssp CEEEEECCCSSCEEEEEECT--TSSEEEEEETTTEEEEEETTT----CCEEEEEECSSSCEEEEEECTTS-SEEEEEETT
T ss_pred hhheeecCCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCC----CCcceEeecCCccEEEEEECCCC-CEEEEEeCC
Confidence 33455788999999999999 999999999999999999987 67888899999999999999998 999999999
Q ss_pred CeEEEEECCCCe-----EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCC
Q 009380 305 GLIRLMDAEKEV-----FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRN 379 (536)
Q Consensus 305 g~I~vwd~~~~~-----~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~ 379 (536)
+.|++||+.+.. ...+.+|...|.++.|++++ .+++++.|+.|++||+++++.+..+.+|...|.+++|+|++
T Consensus 119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC
Confidence 999999998642 23455788999999999875 69999999999999999999999999999999999999977
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCC
Q 009380 380 PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTG 459 (536)
Q Consensus 380 ~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 459 (536)
.+|++|+.|+.|++||++++. ....+.+|...|++++|+|++++|++++.|++|++||+++.+....+.+.....
T Consensus 197 -~~l~sg~~d~~v~~wd~~~~~----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~ 271 (340)
T 1got_B 197 -RLFVSGACDASAKLWDVREGM----CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271 (340)
T ss_dssp -SEEEEEETTSCEEEEETTTCS----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred -CEEEEEeCCCcEEEEECCCCe----eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCccc
Confidence 799999999999999999853 444556899999999999999999999999999999999887766665433211
Q ss_pred ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 460 RWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 460 ~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
. +..++|+|+|.+|++|+.|+.|++||+.+++.+..+.+|...+. .+.|+| ++.+|++|+.||.|+|||
T Consensus 272 -~--v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~--~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 272 -G--ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS--CLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -C--EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred -c--eEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEE--EEEEcC-CCCEEEEEcCCccEEecC
Confidence 2 33478999999999999999999999999988888888665543 678888 679999999999999997
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3e-42 Score=338.96 Aligned_cols=289 Identities=18% Similarity=0.213 Sum_probs=248.3
Q ss_pred ccccCCceEEEEEEec--CCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380 230 ARIMPGRITQMKFLPC--SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLI 307 (536)
Q Consensus 230 ~~~~~~~I~~v~~~p~--~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I 307 (536)
.+.|.+.|++++|+|. .++.+|++|+.|++|+||++.... ......+.+|...|.+++|++++ .++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~--~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER--LDLQWSLEGHQLGVVSVDISHTL-PIAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC--eeeeeeeccCCCCEEEEEECCCC-CEEEEEeCCCcE
Confidence 4689999999999983 136799999999999999997521 23445788999999999999998 999999999999
Q ss_pred EEEECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380 308 RLMDAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386 (536)
Q Consensus 308 ~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~ 386 (536)
++||+.++..... ..+...+.+++|+|++ ++|++|+.+|.|++||+++++....+..|...|.+++|+|++ .+|++|
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG-KYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTS-SEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCC-CEEEEE
Confidence 9999998876544 4567789999999998 899999999999999999999998999999999999999988 799999
Q ss_pred eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeE
Q 009380 387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFR 466 (536)
Q Consensus 387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 466 (536)
+.||.|++||+++++ ....+.+|...|.+++|+|++++|++++.|+.|++||+++.+....+... ...+ ..
T Consensus 183 ~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---~~~v--~~ 253 (321)
T 3ow8_A 183 AIDGIINIFDIATGK----LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH---ASWV--LN 253 (321)
T ss_dssp ETTSCEEEEETTTTE----EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC---SSCE--EE
T ss_pred cCCCeEEEEECCCCc----EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC---CCce--EE
Confidence 999999999999853 44455689999999999999999999999999999999988776665321 1223 34
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 467 AIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 467 ~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
++|+|++.+|++|+.|+.|++||+.+++++..+.+|...+ ..++|+| ++.+|++++.||.|+|||+
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v--~~v~~s~-~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQV--WGVKYNG-NGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE--EEEEECT-TSSEEEEEETTCCEEEEEC
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcE--EEEEECC-CCCEEEEEeCCCeEEEEeC
Confidence 7899999999999999999999999999999988765544 4688888 5689999999999999996
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.7e-42 Score=340.90 Aligned_cols=292 Identities=17% Similarity=0.201 Sum_probs=253.1
Q ss_pred CccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC
Q 009380 225 KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD 304 (536)
Q Consensus 225 ~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d 304 (536)
.....+++|.+.|++++|+| ++.+|++|+.||+|+|||..+ ......+..|...|.+++|+|++ .+|++++.|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~--d~~~l~s~s~Dg~v~vWd~~~----~~~~~~~~~~~~~v~~~~~sp~g-~~lasg~~d 127 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCK--DKRRIVSSSQDGKVIVWDSFT----TNKEHAVTMPCTWVMACAYAPSG-CAIACGGLD 127 (354)
T ss_dssp CEEEEEECCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTT----CCEEEEEECSSSCCCEEEECTTS-SEEEEESTT
T ss_pred EEEEEecCCCCeEEEEEECC--CCCEEEEEeCCCeEEEEECCC----CCcceEEecCCCCEEEEEECCCC-CEEEEeeCC
Confidence 33455789999999999999 999999999999999999987 67778888899999999999999 999999999
Q ss_pred CeEEEEECCCC-------eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEec
Q 009380 305 GLIRLMDAEKE-------VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNP 377 (536)
Q Consensus 305 g~I~vwd~~~~-------~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p 377 (536)
+.+++|++... ....+..|...|.+++|+|++ ..|++++.||+|++||+++++.+..+.+|...|.+++|+|
T Consensus 128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~ 206 (354)
T 2pbi_B 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206 (354)
T ss_dssp SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECC
T ss_pred CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEe
Confidence 99999998643 234455789999999999998 7999999999999999999999999999999999999998
Q ss_pred CC-CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC
Q 009380 378 RN-PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN 456 (536)
Q Consensus 378 ~~-~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~ 456 (536)
.. +++|++|+.||.|++||+++++ ....+..|...|++++|+|++.+|++++.|++|++||++.......+....
T Consensus 207 ~~~g~~l~sgs~Dg~v~~wd~~~~~----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~ 282 (354)
T 2pbi_B 207 SETGNTFVSGGCDKKAMVWDMRSGQ----CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES 282 (354)
T ss_dssp CSSCCEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCc----EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC
Confidence 52 3799999999999999999863 344556899999999999999999999999999999998876665553322
Q ss_pred CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 457 QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 457 ~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
. . .....+.|+|++.+|++|+.|+.|++||+.+++.+..+.+|...+ ..++|+| ++.+|++|+.||.|+||+
T Consensus 283 ~-~--~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v--~~l~~sp-dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 283 I-I--FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRV--STLRVSP-DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp C-C--SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCE--EEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred c-c--cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcE--EEEEECC-CCCEEEEEcCCCCEEecC
Confidence 1 1 123347899999999999999999999999998888888766544 4688999 679999999999999996
No 6
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.1e-42 Score=345.32 Aligned_cols=305 Identities=13% Similarity=0.129 Sum_probs=236.6
Q ss_pred cceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeC------CCcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380 214 GSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSK------LGNITFWNLDSQQDEDNGIYLFRTHLGPISG 287 (536)
Q Consensus 214 dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~------dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~ 287 (536)
+.....|++.. .....|...|++|+|+| ||.+|++|+. |+.|++|+..+.............|...|.+
T Consensus 25 ~~~~~~w~~p~---~~p~~H~~~V~~v~fSp--DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~ 99 (357)
T 4g56_B 25 SSKGSAWGRPV---TAPACMEVQIGAVRYRR--DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTD 99 (357)
T ss_dssp ------------------CCCSEEEEEEECS--SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEE
T ss_pred CccccccCCCC---CCcccccCCEEEEEECC--CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEE
Confidence 34567788632 23467999999999999 9999999997 7789999987654323445566679999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEECCCCeEE-----EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee
Q 009380 288 IVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD-----LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE 362 (536)
Q Consensus 288 l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~-----~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~ 362 (536)
++|+|++ .+++++.||+|++||+.++... ...+|...|.+++|+|++ ++|++|+.||.|++||+++++.+..
T Consensus 100 ~~~s~d~--~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~ 176 (357)
T 4g56_B 100 VAWVSEK--GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKS 176 (357)
T ss_dssp EEEETTT--EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEcCCC--CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEE
Confidence 9999985 6778889999999999876532 234688999999999998 8999999999999999999999999
Q ss_pred EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC-CCeEEEEeCCCcEEEE
Q 009380 363 WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS-GSSLATTSFDDTIGIW 441 (536)
Q Consensus 363 ~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~t~s~dg~I~iw 441 (536)
+.+|...|++++|+|++..++++++.||.|++||+++++. ........|...+.+++|+|+ +.+|++++.|+.|++|
T Consensus 177 ~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~w 254 (357)
T 4g56_B 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP--ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLV 254 (357)
T ss_dssp ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC--BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEE
T ss_pred EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce--eeeeeeccccccccchhhhhcccceEEEeecccceeEE
Confidence 9999999999999998877999999999999999998642 122333467788999999996 5688899999999999
Q ss_pred eCCCCCcceEEeccCCCCceeeeeEEEEcCCC-CEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCE
Q 009380 442 SGVNFENTSMIHHNNQTGRWISSFRAIWGWDD-SCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGT 520 (536)
Q Consensus 442 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~ 520 (536)
|+++++....+.... ..+. .++|+|++ ++|++|+.|+.|+|||+.+++++..+ +|. ..+ ..++|+|.++.+
T Consensus 255 d~~~~~~~~~~~~~~---~~v~--~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~-~~V-~~vafsP~d~~~ 326 (357)
T 4g56_B 255 NIKNPDSAQTSAVHS---QNIT--GLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHR-DFV-TGVAWSPLDHSK 326 (357)
T ss_dssp ESSCGGGCEEECCCS---SCEE--EEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCS-SCE-EEEEECSSSTTE
T ss_pred ECCCCcEeEEEeccc---eeEE--EEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCC-CCE-EEEEEeCCCCCE
Confidence 999988887774322 2233 47799987 57999999999999999999877665 443 344 468999988899
Q ss_pred EEEEccCCeEEEEecC
Q 009380 521 LAGATGGGQVYVWTSD 536 (536)
Q Consensus 521 lasgs~Dg~v~iW~~d 536 (536)
|++|+.||.|++|++.
T Consensus 327 l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 327 FTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EEEEETTSCEEEEECC
T ss_pred EEEEcCCCeEEEEECC
Confidence 9999999999999974
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6e-43 Score=352.49 Aligned_cols=298 Identities=15% Similarity=0.210 Sum_probs=252.8
Q ss_pred cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
...+++|.+.|++++|+| ++.+|++|+.||+|+|||+.+ ......+..|...|.+++|+|++ .+|++|+.|+.
T Consensus 59 ~~~l~gH~~~V~~~~~sp--~~~~l~s~s~D~~v~iWd~~~----~~~~~~~~~h~~~v~~~~~s~~g-~~las~~~d~~ 131 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTP--EKNWIVSASQDGRLIVWNALT----SQKTHAIKLHCPWVMECAFAPNG-QSVACGGLDSA 131 (380)
T ss_dssp EEEECCCSSCEEEEEECT--TSSCEEEEETTSEEEEEETTT----TEEEEEEECCCTTCCCCEECTTS-SEEEECCSSSC
T ss_pred eecccccccEEEEEEEcC--CCCEEEEEeCCCeEEEEECCC----CccceEEecCCCCEEEEEECCCC-CEEEEeeCCCc
Confidence 345689999999999999 999999999999999999987 67888999999999999999999 99999999999
Q ss_pred EEEEECCCCe--------EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE-----eccCCCeEEE
Q 009380 307 IRLMDAEKEV--------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW-----LLHEARINTI 373 (536)
Q Consensus 307 I~vwd~~~~~--------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-----~~h~~~i~~i 373 (536)
|++||+.+.. ...+.+|...|.++.|.|++...|++|+.|++|++||+++++.+..+ .+|...|.++
T Consensus 132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 211 (380)
T 3iz6_a 132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211 (380)
T ss_dssp CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence 9999987532 23455788999999999987678999999999999999999988776 5789999999
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380 374 DFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH 453 (536)
Q Consensus 374 ~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~ 453 (536)
+|++.++++|++|+.|++|++||++... .....+.+|...|++++|+|++.+|++++.|++|++||+++++.+..+.
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~---~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITS---RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTC---CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCC---cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 9998666899999999999999998532 2445566899999999999999999999999999999999988777664
Q ss_pred ccCCC--CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc---CCceeeeeeeEeecCCCCCEEEEEccCC
Q 009380 454 HNNQT--GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ---SPYISAIPCRFHAHPHQVGTLAGATGGG 528 (536)
Q Consensus 454 ~~~~~--~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~---~~~~~~~~~~~~~~p~~~~~lasgs~Dg 528 (536)
..... ........++|+|+|.+|++|+.||.|++||...++.+..+. ..|...+ ..++|+| ++.+|++|+.||
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v-~~l~~s~-dg~~l~sgs~D~ 366 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRI-SCLGLSS-DGSALCTGSWDK 366 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCC-CEEEECS-SSSEEEEECTTS
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCce-EEEEECC-CCCEEEEeeCCC
Confidence 32211 111113347899999999999999999999999888776662 2344444 4688999 679999999999
Q ss_pred eEEEEecC
Q 009380 529 QVYVWTSD 536 (536)
Q Consensus 529 ~v~iW~~d 536 (536)
.|+||++.
T Consensus 367 ~i~iW~~~ 374 (380)
T 3iz6_a 367 NLKIWAFS 374 (380)
T ss_dssp CEEEEECC
T ss_pred CEEEEecC
Confidence 99999974
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.6e-41 Score=331.20 Aligned_cols=292 Identities=17% Similarity=0.216 Sum_probs=247.2
Q ss_pred cCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC
Q 009380 224 LKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY 303 (536)
Q Consensus 224 ~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~ 303 (536)
++....++.|.+.|++++|+| ++.+|++|+.||.|+|||+.+ ...+..+..|..+|.++.|+|++ ++|++|+.
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp--~~~~l~s~~~dg~v~lWd~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~ 75 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHP--TEPWVLTTLYSGRVELWNYET----QVEVRSIQVTETPVRAGKFIARK-NWIIVGSD 75 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECS--SSSEEEEEETTSEEEEEETTT----TEEEEEEECCSSCEEEEEEEGGG-TEEEEEET
T ss_pred ceeEEeecCCCCceEEEEECC--CCCEEEEEcCCCcEEEEECCC----CceeEEeeccCCcEEEEEEeCCC-CEEEEECC
Confidence 334556788999999999999 999999999999999999987 67888999999999999999998 99999999
Q ss_pred CCeEEEEECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc-cceeEeccCCCeEEEEEecCCCC
Q 009380 304 DGLIRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWLLHEARINTIDFNPRNPN 381 (536)
Q Consensus 304 dg~I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~i~~~p~~~~ 381 (536)
|++|++||+.++... .+..|...|.+++|+|++ .+|++|+.||+|++||++++. ....+.+|...|.+++|+|.++.
T Consensus 76 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 154 (304)
T 2ynn_A 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154 (304)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT
T ss_pred CCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC
Confidence 999999999988655 455788999999999998 799999999999999999874 45678899999999999996668
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCccee-ecccCceeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC
Q 009380 382 IMATSSTDGTACIWDLRSMATDKPEPMKV-LSHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT 458 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~-~~~~~~v~~l~~sp--~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~ 458 (536)
+|++|+.|++|++||++... ..... ..|...+..+.|+| ++.+|++++.|++|++||+++++.+..+..+.
T Consensus 155 ~l~sgs~D~~v~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~-- 228 (304)
T 2ynn_A 155 TFASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM-- 228 (304)
T ss_dssp EEEEEETTSEEEEEETTCSS----CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--
T ss_pred EEEEEeCCCeEEEEECCCCC----ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--
Confidence 99999999999999998753 23333 35778899999987 67899999999999999999988877775322
Q ss_pred CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCC-EEEEEccCCeEEEEec
Q 009380 459 GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVYVWTS 535 (536)
Q Consensus 459 ~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~-~lasgs~Dg~v~iW~~ 535 (536)
..+. .++|+|++.+|++|+.||.|++||..+++.+..+..+..... .++++|.++. +|++|+.|| +.+|++
T Consensus 229 -~~v~--~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 229 -SNVS--FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW--CIATHPTGRKNYIASGFDNG-FTVLSL 300 (304)
T ss_dssp -SCEE--EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEE--EEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred -CCEE--EEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEE--EEEECCCCCceEEEEecCCc-eEEEEe
Confidence 1233 377999999999999999999999999999999887655443 5788886544 477777665 666665
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3e-41 Score=358.83 Aligned_cols=324 Identities=15% Similarity=0.232 Sum_probs=281.2
Q ss_pred ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEE
Q 009380 175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAG 254 (536)
Q Consensus 175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg 254 (536)
....+.+|...|.++.|+|+++.++. +..|+.+++|+...........|.+.|++++|+| ++.+|+++
T Consensus 254 ~~~~~~~~~~~v~~v~~~~d~~~l~~----------~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~ 321 (577)
T 2ymu_A 254 LLQTLTGHSSSVNGVAFRPDGQTIAS----------ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP--DGQTIASA 321 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEE----------EETTSCEEEEETTSCEEEEECCCSSCEEEEEECT--TSSEEEEE
T ss_pred EEEEEecCCCCEEEEEEcCCCCEEEE----------EeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECC--CCCEEEEE
Confidence 34567889999999999999998874 4778899999987666666788999999999999 99999999
Q ss_pred eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380 255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQP 334 (536)
Q Consensus 255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~ 334 (536)
+.||.|++|++. ...+..+.+|...|.+++|+|++ .+|++++.||.|++||........+..|...|.+++|+|
T Consensus 322 ~~d~~i~~w~~~-----~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~ 395 (577)
T 2ymu_A 322 SDDKTVKLWNRN-----GQHLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 395 (577)
T ss_dssp ETTSCEEEEETT-----SCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECT
T ss_pred eCCCeEEEEeCC-----CCeeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECC
Confidence 999999999987 45677889999999999999999 999999999999999987777777778999999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc
Q 009380 335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK 414 (536)
Q Consensus 335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~ 414 (536)
++ ++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+.. .....+.+|.
T Consensus 396 dg-~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~-----~~~~~~~~~~ 467 (577)
T 2ymu_A 396 DG-QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNG-----QLLQTLTGHS 467 (577)
T ss_dssp TS-SCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTS-----CEEEEEECCS
T ss_pred CC-CEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCC-CEEEEEcCCCEEEEEECCC-----CEEEEEcCCC
Confidence 98 79999999999999995 577788889999999999999987 7999999999999999753 2455666899
Q ss_pred CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc
Q 009380 415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR 494 (536)
Q Consensus 415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~ 494 (536)
..|++++|+|++++|++++.|+.|++||. +++.+..+... ...+. .++|+|++++|++++.|+.|++||. +++
T Consensus 468 ~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h---~~~v~--~l~~s~dg~~l~s~~~dg~v~lwd~-~~~ 540 (577)
T 2ymu_A 468 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH---SSSVR--GVAFSPDGQTIASASDDKTVKLWNR-NGQ 540 (577)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC---SSCEE--EEEECTTSSCEEEEETTSEEEEECT-TSC
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC---CCCEE--EEEEcCCCCEEEEEECcCEEEEEeC-CCC
Confidence 99999999999999999999999999995 55655555422 12233 4789999999999999999999996 567
Q ss_pred cceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 495 SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 495 ~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
.+..+.+|...+ ..++|+| ++.+|++++.||.|++||
T Consensus 541 ~~~~~~~h~~~v--~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 541 LLQTLTGHSSSV--WGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEEECCSSCE--EEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCCE--EEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 888888866544 3678898 679999999999999997
No 10
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-41 Score=346.19 Aligned_cols=288 Identities=13% Similarity=0.184 Sum_probs=255.5
Q ss_pred cceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEE
Q 009380 176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAG 254 (536)
Q Consensus 176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg 254 (536)
...+.+|.+.|.++.|+|++..++ +++.||.|++||+... ....+++|.+.|++++|+| ++.+|++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~----------s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~--~~~~l~sg 168 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMV----------SASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH--SGKLLASC 168 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEE----------EEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT--TSSEEEEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEE----------EEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcC--CCCEEEEE
Confidence 456889999999999999999888 4588999999998543 3445688999999999999 99999999
Q ss_pred eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEEEec
Q 009380 255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQ 333 (536)
Q Consensus 255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~ 333 (536)
+.||+|+|||+.+ ...+..+.+|...|.+++|+|++ .+|++|+.|++|++||+.++.... +.+|...|.+++|+
T Consensus 169 s~D~~i~iwd~~~----~~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~ 243 (410)
T 1vyh_C 169 SADMTIKLWDFQG----FECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243 (410)
T ss_dssp ETTSCCCEEETTS----SCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred eCCCeEEEEeCCC----CceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEEC
Confidence 9999999999987 67888999999999999999998 999999999999999999887654 45688899999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCC-------------------CCEEEEEeCCCcEEE
Q 009380 334 PNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRN-------------------PNIMATSSTDGTACI 394 (536)
Q Consensus 334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~-------------------~~~l~s~s~dg~i~i 394 (536)
+++ .+|++|+.||.|++||++++++...+..|...|.+++|+|++ +.+|++|+.|+.|++
T Consensus 244 ~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~i 322 (410)
T 1vyh_C 244 QDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322 (410)
T ss_dssp TTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred CCC-CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEE
Confidence 998 899999999999999999999999999999999999999963 358999999999999
Q ss_pred EeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC
Q 009380 395 WDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS 474 (536)
Q Consensus 395 wdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 474 (536)
||++++. ....+.+|...|.+++|+|+|.+|++++.|++|++||+.+++....+..+. ..+. .+.|+|++.
T Consensus 323 wd~~~~~----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~---~~v~--~l~~~~~~~ 393 (410)
T 1vyh_C 323 WDVSTGM----CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE---HFVT--SLDFHKTAP 393 (410)
T ss_dssp EETTTTE----EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS---SCEE--EEEECSSSS
T ss_pred EECCCCc----eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC---CcEE--EEEEcCCCC
Confidence 9999853 455566899999999999999999999999999999999988887775322 2233 478999999
Q ss_pred EEEEEcCCCcEEEEcC
Q 009380 475 CVFIGNMTRTVEVISP 490 (536)
Q Consensus 475 ~l~~gs~dg~I~v~d~ 490 (536)
+|++|+.|+.|+||++
T Consensus 394 ~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 394 YVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CEEEEETTSEEEEEC-
T ss_pred EEEEEeCCCcEEEEeC
Confidence 9999999999999986
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.8e-41 Score=361.62 Aligned_cols=326 Identities=16% Similarity=0.204 Sum_probs=270.0
Q ss_pred cccceeeeecCCCCcccccccccccccccccccceEEeccccc-CccccccccCCceEEEEEEecCCccEEEEEeCCCcE
Q 009380 182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL-KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNI 260 (536)
Q Consensus 182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~-~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v 260 (536)
+...+.++.|+|||+.+++. .++.+.||++.. .....+.+|.+.|++++|+| +|.+||+|+.||+|
T Consensus 17 ~~g~~~~~~~spdg~~l~~~-----------~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~sp--dg~~lasg~~d~~v 83 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDKIQYC-----------NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP--SGYYCASGDVHGNV 83 (611)
T ss_dssp CTTCCCCCEECTTSSEEEEE-----------ETTEEEEEETTCSSCCEEECCCSSCEEEEEECT--TSSEEEEEETTSEE
T ss_pred ccCceeEEeeCCCCCEEEeC-----------CCCEEEEecCCCcccCeEecCCCCceEEEEECC--CCcEEEEEeCCCCE
Confidence 45667788999999999865 245899999853 34556788999999999999 99999999999999
Q ss_pred EEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC----CeEEEEECCCCeEEEeecCCCceeEEEecCCC
Q 009380 261 TFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD----GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNN 336 (536)
Q Consensus 261 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d----g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~ 336 (536)
+|||+.+.. ......+.+|.+.|.+++|+|++ .+|++++.+ +.|++||... ....+.+|...|.+++|+|++
T Consensus 84 ~lWd~~~~~--~~~~~~~~~~~~~v~~v~fs~dg-~~l~~~~~~~~~~~~v~~wd~~~-~~~~l~gh~~~v~~v~f~p~~ 159 (611)
T 1nr0_A 84 RIWDTTQTT--HILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGT-SNGNLTGQARAMNSVDFKPSR 159 (611)
T ss_dssp EEEESSSTT--CCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCC-BCBCCCCCSSCEEEEEECSSS
T ss_pred EEeECCCCc--ceeeEeecccCCceEEEEECCCC-CEEEEEECCCCceeEEEEeeCCC-CcceecCCCCCceEEEECCCC
Confidence 999997532 34556788999999999999999 899988875 4788888543 233456789999999999998
Q ss_pred CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee------
Q 009380 337 VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV------ 410 (536)
Q Consensus 337 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~------ 410 (536)
+..|++|+.|++|++||..+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||+.+++ ....+
T Consensus 160 ~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~----~~~~~~~~~~~ 234 (611)
T 1nr0_A 160 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGT----KTGVFEDDSLK 234 (611)
T ss_dssp SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC----EEEECBCTTSS
T ss_pred CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCc----Eeeeecccccc
Confidence 6689999999999999999988889999999999999999987 799999999999999998764 11122
Q ss_pred -ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEc
Q 009380 411 -LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVIS 489 (536)
Q Consensus 411 -~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d 489 (536)
.+|...|.+++|+|+|++|++++.|++|+|||+.+++....+........ ..+.+.| ++..+++++.|+.|++|+
T Consensus 235 ~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~l~s~s~d~~i~~~~ 310 (611)
T 1nr0_A 235 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED--QQLGIIW--TKQALVSISANGFINFVN 310 (611)
T ss_dssp SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG--CEEEEEE--CSSCEEEEETTCCEEEEE
T ss_pred ccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccc--eeEEEEE--cCCEEEEEeCCCcEEEEe
Confidence 27999999999999999999999999999999999887777653322211 1223445 678999999999999999
Q ss_pred CCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 490 PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 490 ~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
..+++....+.+|...+ ..++|+| ++.+|++++.||.|++||++
T Consensus 311 ~~~~~~~~~~~gh~~~v--~~l~~sp-dg~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 311 PELGSIDQVRYGHNKAI--TALSSSA-DGKTLFSADAEGHINSWDIS 354 (611)
T ss_dssp TTTTEEEEEECCCSSCE--EEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred CCCCCcceEEcCCCCCE--EEEEEeC-CCCEEEEEeCCCcEEEEECC
Confidence 99888777777765544 4688999 67999999999999999973
No 12
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.3e-42 Score=350.16 Aligned_cols=299 Identities=24% Similarity=0.384 Sum_probs=248.7
Q ss_pred ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEE
Q 009380 230 ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRL 309 (536)
Q Consensus 230 ~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~v 309 (536)
...|..+|+||+|||. ++.+||+|+.||.|+|||+.... ......+.+|.+.|++|+|+|.++.+|++|+.||+|++
T Consensus 115 ~~~~~~~V~~l~~~P~-~~~~lasGs~dg~i~lWd~~~~~--~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 115 AAPFDRRATSLAWHPT-HPSTVAVGSKGGDIMLWNFGIKD--KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp EEECSSCEEEEEECSS-CTTCEEEEETTSCEEEECSSCCS--CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred CCCCCCCEEEEEEeCC-CCCEEEEEeCCCEEEEEECCCCC--ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 4678899999999995 56799999999999999998643 34555677899999999999864489999999999999
Q ss_pred EECCCCeEEEeecC---CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380 310 MDAEKEVFDLVYSS---EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386 (536)
Q Consensus 310 wd~~~~~~~~~~~~---~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~ 386 (536)
||++++.......+ ...+.+++|+|++ .+|++|+.||.|++||++ ++.+..+.+|...|++++|+|++..+|++|
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATA 269 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEe
Confidence 99998876655543 3467899999998 899999999999999986 456778889999999999999988899999
Q ss_pred eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE-eccCCCCceeeee
Q 009380 387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI-HHNNQTGRWISSF 465 (536)
Q Consensus 387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~-~~~~~~~~~~~~~ 465 (536)
+.|+.|+|||+++..... ......+|...|++++|+|+|.+|++++.|+.|+|||+.++.....+ .|.......+..+
T Consensus 270 s~d~~v~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 348 (435)
T 4e54_B 270 SVDQTVKIWDLRQVRGKA-SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPI 348 (435)
T ss_dssp ETTSBCCEEETTTCCSSS-CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCC
T ss_pred cCcceeeEEecccccccc-eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeE
Confidence 999999999999865321 23344579999999999999999999999999999999988776665 3444555555666
Q ss_pred EEEEcCCCCEEEEEcC------------CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380 466 RAIWGWDDSCVFIGNM------------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533 (536)
Q Consensus 466 ~~~~s~~g~~l~~gs~------------dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW 533 (536)
.+.|++++.++++++. ++.|++||..+++.+..+..+|...+.+...|+| ++.+|++|+ |+.|+||
T Consensus 349 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 349 KAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILIW 426 (435)
T ss_dssp BCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEEC
T ss_pred EEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEEE
Confidence 6788888888777642 3579999999999998887777776656567999 678998876 7899999
Q ss_pred ecC
Q 009380 534 TSD 536 (536)
Q Consensus 534 ~~d 536 (536)
+++
T Consensus 427 ~~~ 429 (435)
T 4e54_B 427 SQQ 429 (435)
T ss_dssp CCC
T ss_pred ECC
Confidence 975
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.8e-40 Score=324.84 Aligned_cols=290 Identities=19% Similarity=0.238 Sum_probs=249.4
Q ss_pred ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380 228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLI 307 (536)
Q Consensus 228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I 307 (536)
..+.+|.+.|++++|+| ++++|++|+.||.|++|++.+ ......+.+|...|.+++|+|++ ++|++++.|+.|
T Consensus 17 ~~~~gh~~~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~----~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i 89 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD----GKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTL 89 (312)
T ss_dssp EEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTT----CCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred EEEcccCCcEEEEEECC--CCCEEEEeeCCCeEEEEeCCC----cccchhhccCCCceEEEEEcCCC-CEEEEECCCCEE
Confidence 34578999999999999 999999999999999999987 67788899999999999999998 999999999999
Q ss_pred EEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380 308 RLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386 (536)
Q Consensus 308 ~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~ 386 (536)
++||+.++.... +..|...|.+++|+|++ ++|++|+.||.|++||+++++.+..+..|...|.+++|+|++ .+|+++
T Consensus 90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 167 (312)
T 4ery_A 90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSS 167 (312)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCC-CEEEEE
Confidence 999999886554 45688999999999998 899999999999999999999999999999999999999977 799999
Q ss_pred eCCCcEEEEeCCCCCCCCCCccee-ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee
Q 009380 387 STDGTACIWDLRSMATDKPEPMKV-LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF 465 (536)
Q Consensus 387 s~dg~i~iwdl~~~~~~~~~~~~~-~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 465 (536)
+.||.|++||+++++ ..... ..+...+..++|+|++++|++++.|+.|++||+.+++....+.........+
T Consensus 168 ~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--- 240 (312)
T 4ery_A 168 SYDGLCRIWDTASGQ----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI--- 240 (312)
T ss_dssp ETTSCEEEEETTTCC----EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCC---
T ss_pred eCCCcEEEEECCCCc----eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEE---
Confidence 999999999999853 22222 2567789999999999999999999999999999888776664322221111
Q ss_pred EEEE-cCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEc--cCCeEEEEecC
Q 009380 466 RAIW-GWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT--GGGQVYVWTSD 536 (536)
Q Consensus 466 ~~~~-s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs--~Dg~v~iW~~d 536 (536)
...| .+++.+|++|+.|+.|++||+.+++.+..+.+|...+ ..++|+| ++.+|++++ .||.|++|+.|
T Consensus 241 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v--~~~~~~p-~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV--ISTACHP-TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCE--EEEEECS-SSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcE--EEEeecC-cCCceEEEEccCCccEEEecCC
Confidence 1233 4678899999999999999999999999998876554 4678999 458999886 69999999975
No 14
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.6e-41 Score=331.08 Aligned_cols=300 Identities=10% Similarity=0.089 Sum_probs=231.6
Q ss_pred EecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCC-------CCCCCCceEEeccCCCCEEEEEE
Q 009380 218 DIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDS-------QQDEDNGIYLFRTHLGPISGIVT 290 (536)
Q Consensus 218 ~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~-------~~~~~~~~~~~~~h~~~V~~l~~ 290 (536)
+.|++... ....|...|.+++|+| ||.+|++++ |+++++||... .............|...|.+++|
T Consensus 17 r~w~~~~~---~~~~~~~~v~~~~fs~--dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 90 (344)
T 4gqb_B 17 REWNLPPN---APACMERQLEAARYRS--DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW 90 (344)
T ss_dssp ------CC---SCSSCCSEEEEEEECT--TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE
T ss_pred cccCCCCC---CcccccCCEEEEEECC--CCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE
Confidence 55775322 2356778899999999 999999887 67778776321 00001222233446778999999
Q ss_pred ecCCCCEEEEEECCCeEEEEECCCCeEE-----EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec
Q 009380 291 QQYCLSKIFTSCYDGLIRLMDAEKEVFD-----LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL 365 (536)
Q Consensus 291 ~~~~~~~l~s~s~dg~I~vwd~~~~~~~-----~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 365 (536)
+|+ ..|++|+.||+|++||+.+++.. ...+|...|.+++|+|++ ++|++|+.||+|++||+++++++..+.+
T Consensus 91 s~d--~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~~~ 167 (344)
T 4gqb_B 91 VGE--RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSYRA 167 (344)
T ss_dssp ETT--TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred eCC--CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 998 57899999999999999887532 234789999999999998 8999999999999999999999999999
Q ss_pred cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCC
Q 009380 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 366 h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~ 444 (536)
|...|++++|+|++..+|++|+.|++|++||+++++. ...+....|...+.+++|+| ++++|++|+.|++|+|||++
T Consensus 168 h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 168 HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC--EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred cCCceEEEEecCCCCCceeeeccccccccccccccce--eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 9999999999999878999999999999999998641 11122235667899999999 56788999999999999999
Q ss_pred CCCcceEEeccCCCCceeeeeEEEEcCCC-CEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEE
Q 009380 445 NFENTSMIHHNNQTGRWISSFRAIWGWDD-SCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG 523 (536)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las 523 (536)
+++.+..+.... ..+. .++|+|++ .+|++|+.|+.|+|||+.+++++ .+.+|...+ ..++|+|.+..+|++
T Consensus 246 ~~~~~~~~~~h~---~~v~--~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V--~~v~~sp~~~~llas 317 (344)
T 4gqb_B 246 STSCVLSSAVHS---QCVT--GLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFV--RDATWSPLNHSLLTT 317 (344)
T ss_dssp C--CCEEEECCS---SCEE--EEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCE--EEEEECSSSTTEEEE
T ss_pred CCcEEEEEcCCC---CCEE--EEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCE--EEEEEeCCCCeEEEE
Confidence 999888775322 2233 47899997 57999999999999999998654 556655443 468999966567889
Q ss_pred EccCCeEEEEecC
Q 009380 524 ATGGGQVYVWTSD 536 (536)
Q Consensus 524 gs~Dg~v~iW~~d 536 (536)
|+.||+|++|+++
T Consensus 318 ~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 318 VGWDHQVVHHVVP 330 (344)
T ss_dssp EETTSCEEEEECC
T ss_pred EcCCCeEEEEECC
Confidence 9999999999974
No 15
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3e-40 Score=351.04 Aligned_cols=326 Identities=15% Similarity=0.224 Sum_probs=282.5
Q ss_pred ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEE
Q 009380 175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAG 254 (536)
Q Consensus 175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg 254 (536)
....+.+|...|.++.|+|++..++. ++.|+.|++|+...........|...|++++|+| ++.+|+++
T Consensus 213 ~~~~~~~~~~~v~~~~~s~dg~~l~~----------~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~--d~~~l~~~ 280 (577)
T 2ymu_A 213 LLQTLTGHSSSVRGVAFSPDGQTIAS----------ASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRP--DGQTIASA 280 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEE----------EETTSCEEEECTTSCEEEEECCCSSCEEEEEECT--TSSEEEEE
T ss_pred EEEEEecCCCCEEEEEECCCCCEEEE----------EeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCEEEEE
Confidence 34567889999999999999998884 4778999999987666667788999999999999 99999999
Q ss_pred eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380 255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQP 334 (536)
Q Consensus 255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~ 334 (536)
+.|+.|++|+.. ...+..+.+|...|.+++|+|++ .+|++++.|+.|++||+.......+..|...|.+++|+|
T Consensus 281 ~~d~~i~~w~~~-----~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~ 354 (577)
T 2ymu_A 281 SDDKTVKLWNRN-----GQLLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSP 354 (577)
T ss_dssp ETTSCEEEEETT-----SCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECT
T ss_pred eCCCEEEEEeCC-----CcEEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECC
Confidence 999999999976 56778889999999999999998 999999999999999999888888888999999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc
Q 009380 335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK 414 (536)
Q Consensus 335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~ 414 (536)
++ .+|++|+.||.|++||. +++.+..+..|...|.+++|+|++ .+|++++.|+.|++||... .....+.+|.
T Consensus 355 ~g-~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~-----~~~~~~~~~~ 426 (577)
T 2ymu_A 355 DG-QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNG-----QLLQTLTGHS 426 (577)
T ss_dssp TS-SEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTTC-----CEEEEEECCS
T ss_pred CC-CEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCC-----CEEEEecCCC
Confidence 98 89999999999999995 577788899999999999999988 6899999999999999643 2445566899
Q ss_pred CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc
Q 009380 415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR 494 (536)
Q Consensus 415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~ 494 (536)
..|++++|+|++++|++++.|+.|++||.. ++....+... ...+. .++|+|++++|++++.|+.|++||. +++
T Consensus 427 ~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~---~~~v~--~~~~spd~~~las~~~d~~i~iw~~-~~~ 499 (577)
T 2ymu_A 427 SSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGH---SSSVR--GVAFSPDGQTIASASDDKTVKLWNR-NGQ 499 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECC---SSCEE--EEEECTTSCEEEEEETTSEEEEEET-TSC
T ss_pred CCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCC---CCCEE--EEEEcCCCCEEEEEeCCCEEEEEcC-CCC
Confidence 999999999999999999999999999964 4444444321 12233 4789999999999999999999995 567
Q ss_pred cceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 495 SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 495 ~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
.+..+.+|...+. .++|+| ++.+|++++.||.|+|||.+
T Consensus 500 ~~~~~~~h~~~v~--~l~~s~-dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 500 LLQTLTGHSSSVR--GVAFSP-DGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp EEEEEECCSSCEE--EEEECT-TSSCEEEEETTSEEEEECTT
T ss_pred EEEEEeCCCCCEE--EEEEcC-CCCEEEEEECcCEEEEEeCC
Confidence 8888887665543 678898 67999999999999999863
No 16
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.2e-40 Score=328.58 Aligned_cols=289 Identities=19% Similarity=0.174 Sum_probs=248.0
Q ss_pred ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEE
Q 009380 175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVA 253 (536)
Q Consensus 175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~t 253 (536)
....+.+|.+.|.++.|+++++.++ +++.||.|++||+... .......|...|.+++|+| ++.+|++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~----------s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s 114 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLL----------SASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP--SGNYVAC 114 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEE----------EEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECT--TSSEEEE
T ss_pred hheeecCCCCceEEEEECCCCCEEE----------EEeCCCcEEEEECCCCCcceEeecCCccEEEEEECC--CCCEEEE
Confidence 4567899999999999999999888 4588999999997443 2334567899999999999 9999999
Q ss_pred EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-ecCCCceeEEEe
Q 009380 254 GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-YSSEYAVFSLSQ 332 (536)
Q Consensus 254 g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~ 332 (536)
|+.|+.|++|++.+..........+.+|.+.|.++.|++++ .|++++.|++|++||+.++..... .+|...|.+++|
T Consensus 115 ~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 192 (340)
T 1got_B 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192 (340)
T ss_dssp EETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEE
Confidence 99999999999987432234566788999999999999875 699999999999999999876554 468899999999
Q ss_pred cCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec
Q 009380 333 QPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS 412 (536)
Q Consensus 333 ~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~ 412 (536)
+|++ .+|++|+.||.|++||++++..+..+.+|...|++++|+|++ ++|++|+.||+|++||++... ......
T Consensus 193 ~~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~-----~~~~~~ 265 (340)
T 1got_B 193 APDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ-----ELMTYS 265 (340)
T ss_dssp CTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE-----EEEEEC
T ss_pred CCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCc-----EEEEEc
Confidence 9998 899999999999999999999999999999999999999987 799999999999999998753 223333
Q ss_pred ---ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEc
Q 009380 413 ---HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVIS 489 (536)
Q Consensus 413 ---~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d 489 (536)
+...|.+++|+|+|.+|++++.|+.|++||+.+.+....+..+. ..+. .+.|+|+|.+|++|+.|+.|+|||
T Consensus 266 ~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~---~~v~--~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD---NRVS--CLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS---SCEE--EEEECTTSSCEEEEETTSCEEEEC
T ss_pred cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC---CcEE--EEEEcCCCCEEEEEcCCccEEecC
Confidence 33579999999999999999999999999999888777664222 2333 477999999999999999999997
No 17
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-41 Score=346.41 Aligned_cols=343 Identities=15% Similarity=0.188 Sum_probs=276.0
Q ss_pred cccceeeeecCCCCc-ccccccccccccccccccceEEecccccCc---cccccccCCceEEEEEEecCCccEEEEEeCC
Q 009380 182 EFNGFKTCKDEGLGV-GSCDLIKGVVKTEKIEVGSCVDIGSLTLKP---ENIARIMPGRITQMKFLPCSDVRMVVAGSKL 257 (536)
Q Consensus 182 ~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~---~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d 257 (536)
+...|.++.|+|+++ +++.....+....+.+.||.|+||++.... ......|...|++++|+| ++.+|++|+.|
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d 88 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSH--NNKIIAGALDN 88 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECS--SSSCEEEEESS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECC--CCCeEEEEccC
Confidence 346788999999997 666543333333344788999999986543 222345889999999999 99999999999
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe------EEE----eecCCCce
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV------FDL----VYSSEYAV 327 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~------~~~----~~~~~~~i 327 (536)
|.|++|++.........+..+.+|...|.+++|+|++..+|++++.||.|++||+.++. ... ...|...|
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 99999999863222357888899999999999999844999999999999999998875 222 24678899
Q ss_pred eEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc------CCCeEEEEEecCCCCEEEEEeCCC---cEEEEeCC
Q 009380 328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH------EARINTIDFNPRNPNIMATSSTDG---TACIWDLR 398 (536)
Q Consensus 328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h------~~~i~~i~~~p~~~~~l~s~s~dg---~i~iwdl~ 398 (536)
.+++|+|++..+|++++.||.|++||+++++.+..+..| ...|.+++|+|++..+|++++.|+ .|++||++
T Consensus 169 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence 999999996689999999999999999999988888766 789999999998878999999998 99999999
Q ss_pred CCCCCCCCcceee-cccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCC-CE
Q 009380 399 SMATDKPEPMKVL-SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDD-SC 475 (536)
Q Consensus 399 ~~~~~~~~~~~~~-~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~ 475 (536)
++. .....+. +|...|.+++|+| ++.+|++++.|+.|++||+.+++.+..+..... .+ ..++|+|++ .+
T Consensus 249 ~~~---~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~---~v--~~~~~s~~~~~~ 320 (416)
T 2pm9_A 249 NAN---TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN---WC--FKTKFAPEAPDL 320 (416)
T ss_dssp STT---SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS---CC--CCEEECTTCTTE
T ss_pred CCC---CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC---ce--EEEEECCCCCCE
Confidence 853 1333444 7999999999999 999999999999999999999888777753221 22 337799998 89
Q ss_pred EEEEcCCCcEEEEcCCccccceeccC--------------C--------------------ceeeeeeeEeecCCCCCEE
Q 009380 476 VFIGNMTRTVEVISPAQRRSVATLQS--------------P--------------------YISAIPCRFHAHPHQVGTL 521 (536)
Q Consensus 476 l~~gs~dg~I~v~d~~~~~~~~~l~~--------------~--------------------~~~~~~~~~~~~p~~~~~l 521 (536)
|++++.|+.|++|++.+......... + +...+ ..++|+| ++.+|
T Consensus 321 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~-dg~~l 398 (416)
T 2pm9_A 321 FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPS-PAAHWAF-GGKLV 398 (416)
T ss_dssp EEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCS-CCCEEET-TTEEE
T ss_pred EEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCc-cceEEee-CCeEE
Confidence 99999999999999987754332211 0 11121 3567888 67999
Q ss_pred EEEccCCeEEEEecC
Q 009380 522 AGATGGGQVYVWTSD 536 (536)
Q Consensus 522 asgs~Dg~v~iW~~d 536 (536)
++++.||.|+||+++
T Consensus 399 a~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 399 QITPDGKGVSITNPK 413 (416)
T ss_dssp CBCTTSSCBCCBCCC
T ss_pred EEeCCCCeEEEEEec
Confidence 999999999999974
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.8e-41 Score=328.89 Aligned_cols=287 Identities=13% Similarity=0.134 Sum_probs=248.9
Q ss_pred ceecccccceeeeecCCCC----cccccccccccccccccccceEEecccccCcc---ccccccCCceEEEEEEecCCcc
Q 009380 177 FVIKDEFNGFKTCKDEGLG----VGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE---NIARIMPGRITQMKFLPCSDVR 249 (536)
Q Consensus 177 ~~~~~~~~~v~~~~~s~~~----~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~---~~~~~~~~~I~~v~~~p~~~~~ 249 (536)
..+.+|.+.|.++.|++++ ..++ +++.|+.|+||++..... ..+.+|...|.+++|+| ++.
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~----------tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~--~~~ 93 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVV----------TGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH--TLP 93 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEE----------EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS--SSS
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEE----------EEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC--CCC
Confidence 3457899999999999864 4455 678999999999754432 23578999999999999 999
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-eecCCCcee
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVF 328 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~ 328 (536)
++++|+.|++|++||+.+ +..+..+..|...+.+++|+|++ .+|++++.||.|++||++++.... +..+...|.
T Consensus 94 ~l~s~s~D~~i~lWd~~~----~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~ 168 (321)
T 3ow8_A 94 IAASSSLDAHIRLWDLEN----GKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 168 (321)
T ss_dssp EEEEEETTSEEEEEETTT----TEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEE
T ss_pred EEEEEeCCCcEEEEECCC----CCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEE
Confidence 999999999999999987 67888889999999999999999 999999999999999999876554 445678899
Q ss_pred EEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc
Q 009380 329 SLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM 408 (536)
Q Consensus 329 ~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~ 408 (536)
+++|+|++ ++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++ .+|++|+.|+.|++||++.+. ...
T Consensus 169 ~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~----~~~ 242 (321)
T 3ow8_A 169 SIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHAN----LAG 242 (321)
T ss_dssp EEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCC----EEE
T ss_pred EEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcc----eeE
Confidence 99999998 899999999999999999999999999999999999999987 799999999999999998753 445
Q ss_pred eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380 409 KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488 (536)
Q Consensus 409 ~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~ 488 (536)
.+.+|...|.+++|+|++.+|++++.|++|+|||+.+++++..+.... ..+ ..++|+|++.+|++++.|+.|+||
T Consensus 243 ~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~---~~v--~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ---DQV--WGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS---SCE--EEEEECTTSSEEEEEETTCCEEEE
T ss_pred EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC---CcE--EEEEECCCCCEEEEEeCCCeEEEE
Confidence 566899999999999999999999999999999999988877764221 123 347899999999999999999999
Q ss_pred cCC
Q 009380 489 SPA 491 (536)
Q Consensus 489 d~~ 491 (536)
|..
T Consensus 318 d~p 320 (321)
T 3ow8_A 318 DCP 320 (321)
T ss_dssp ECC
T ss_pred eCC
Confidence 963
No 19
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.1e-40 Score=328.67 Aligned_cols=296 Identities=13% Similarity=0.133 Sum_probs=233.6
Q ss_pred ccccceeeeecCCCCcccccccccccccccccccceEEecccccC-c----cccccccCCceEEEEEEecCCccEEEEEe
Q 009380 181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-P----ENIARIMPGRITQMKFLPCSDVRMVVAGS 255 (536)
Q Consensus 181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~----~~~~~~~~~~I~~v~~~p~~~~~~l~tg~ 255 (536)
.|...|.++.|+|||++++...+..+++| ++.+.+|+.... + ......|...|++++|+| ++ .|++|+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~sd~~~r~W----d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~-~l~~~s 100 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGASSLSGRCW----AGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG--ER-GILVAS 100 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEECCSSSCC----CEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET--TT-EEEEEE
T ss_pred cccCCEEEEEECCCCCEEEEEeCCceEEe----eceeeeeccccccCCcceeeeeeccCCCEEEEEEeC--CC-eEEEEE
Confidence 35567899999999999997655555554 234444442111 1 111233567899999999 74 688999
Q ss_pred CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-ecCCCceeEEEecC
Q 009380 256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQP 334 (536)
Q Consensus 256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~ 334 (536)
.||+|+|||+.++...........+|.+.|++++|+|++ ++|++|+.|++|++||+.++..... .+|...|.+++|++
T Consensus 101 ~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 101 DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP 179 (344)
T ss_dssp TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence 999999999987432111223456899999999999999 9999999999999999999877654 46899999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec
Q 009380 335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS 412 (536)
Q Consensus 335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~ 412 (536)
++..+|++++.||+|++||+++++.+..+. .|...+.+++|+|++.++|++|+.||.|++||+++++ .+..+.+
T Consensus 180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~----~~~~~~~ 255 (344)
T 4gqb_B 180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS----CVLSSAV 255 (344)
T ss_dssp SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC------CCEEEEC
T ss_pred CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc----EEEEEcC
Confidence 987899999999999999999999887764 4567799999999887899999999999999999864 5566778
Q ss_pred ccCceeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC-EEEEEcCCCcEEEEcC
Q 009380 413 HKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS-CVFIGNMTRTVEVISP 490 (536)
Q Consensus 413 ~~~~v~~l~~sp~g-~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs~dg~I~v~d~ 490 (536)
|...|++++|+|++ ++|++++.|++|+|||+.+++......|. ..+. .++|+|++. +|++|+.|+.|++|++
T Consensus 256 h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~----~~V~--~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 256 HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHR----DFVR--DATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCS----SCEE--EEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCC----CCEE--EEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 99999999999987 57999999999999999887654433332 2344 478999986 4678999999999999
Q ss_pred Cccc
Q 009380 491 AQRR 494 (536)
Q Consensus 491 ~~~~ 494 (536)
.+..
T Consensus 330 ~~~~ 333 (344)
T 4gqb_B 330 PTEP 333 (344)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7753
No 20
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-40 Score=337.19 Aligned_cols=324 Identities=15% Similarity=0.157 Sum_probs=271.7
Q ss_pred cccccceeeeecCCCCc-ccccccccccccccccccceEEeccc----ccCc-------cccccc----------cCCce
Q 009380 180 KDEFNGFKTCKDEGLGV-GSCDLIKGVVKTEKIEVGSCVDIGSL----TLKP-------ENIARI----------MPGRI 237 (536)
Q Consensus 180 ~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~~~~dg~v~lw~~----~~~~-------~~~~~~----------~~~~I 237 (536)
..|.+.|.++.|+|++. +++. ++.||.|.+|++ .... ...... |.+.|
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~----------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAY----------GEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQV 111 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEE----------EETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCE
T ss_pred eeccCceEEEEECCCCCcEEEE----------ecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCce
Confidence 44569999999999999 8874 477899999998 4433 111122 57799
Q ss_pred EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380 238 TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF 317 (536)
Q Consensus 238 ~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~ 317 (536)
++++|+| ++.+|++|+.||.|++|+.. ...+..+..|...|.+++|+|++ .+|++++.||.|++||+.++..
T Consensus 112 ~~~~~s~--~~~~l~~~~~dg~i~i~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 112 TCLAWSH--DGNSIVTGVENGELRLWNKT-----GALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETT-----SCEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEE
T ss_pred EEEEEcC--CCCEEEEEeCCCeEEEEeCC-----CCeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcE
Confidence 9999999 99999999999999999943 67888899999999999999998 9999999999999999998876
Q ss_pred EEeec-CCCc---------------eeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCC
Q 009380 318 DLVYS-SEYA---------------VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPN 381 (536)
Q Consensus 318 ~~~~~-~~~~---------------i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~ 381 (536)
...+. +... +.+++|++++ .+++++.+|.|++||+++++.+..+..|...|.+++|+|++ .
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 260 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN-K 260 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT-T
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC-C
Confidence 65554 3333 9999999875 79999999999999999999999999999999999999987 6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCce
Q 009380 382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRW 461 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 461 (536)
+|++++.||.|++||+++++ ....+..|...|.+++|+|++ +|++++.|+.|++||+.+++....+.... ..
T Consensus 261 ~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~ 332 (425)
T 1r5m_A 261 LLLSASDDGTLRIWHGGNGN----SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG---VP 332 (425)
T ss_dssp EEEEEETTSCEEEECSSSBS----CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT---CC
T ss_pred EEEEEcCCCEEEEEECCCCc----cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC---cc
Confidence 99999999999999999853 445555799999999999999 99999999999999999888776664322 22
Q ss_pred eeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc--------------------cceeccCCcee-eeeeeEeecCCCCCE
Q 009380 462 ISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR--------------------SVATLQSPYIS-AIPCRFHAHPHQVGT 520 (536)
Q Consensus 462 ~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~--------------------~~~~l~~~~~~-~~~~~~~~~p~~~~~ 520 (536)
+ ..+.|+|++.+|++++.||.|++||+.+++ .+..+..+... .+ ..+.|+| ++.+
T Consensus 333 i--~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~-~~~~ 408 (425)
T 1r5m_A 333 I--FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI-FDLSWNC-AGNK 408 (425)
T ss_dssp E--EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCE-EEEEECT-TSSE
T ss_pred E--EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCce-EEEEccC-CCce
Confidence 3 347899999999999999999999999888 78888876553 33 5788999 5689
Q ss_pred EEEEccCCeEEEEecC
Q 009380 521 LAGATGGGQVYVWTSD 536 (536)
Q Consensus 521 lasgs~Dg~v~iW~~d 536 (536)
|++++.||.|+||+++
T Consensus 409 l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 409 ISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEESSSCCEEEECC
T ss_pred EEEEecCceEEEEeec
Confidence 9999999999999985
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.9e-40 Score=324.64 Aligned_cols=290 Identities=13% Similarity=0.225 Sum_probs=243.2
Q ss_pred cccccCCceEEEEEEecCCc-cEEEEEeCCCcEEEEECCCCCC-CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 229 IARIMPGRITQMKFLPCSDV-RMVVAGSKLGNITFWNLDSQQD-EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 229 ~~~~~~~~I~~v~~~p~~~~-~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
.+.+|.+.|++++|+| ++ .+|++|+.|++|++|++..... ....+..+.+|...|.+++|+|++ .+|++|+.|++
T Consensus 12 ~l~gH~~~V~~l~~~~--~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~ 88 (319)
T 3frx_A 12 TLEGHNGWVTSLATSA--GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKT 88 (319)
T ss_dssp EECCCSSCEEEEEECS--SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred EEccccceEEEEEccC--CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEEeCCCE
Confidence 3588999999999999 54 8999999999999999874221 123567889999999999999999 99999999999
Q ss_pred EEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCC-----C
Q 009380 307 IRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRN-----P 380 (536)
Q Consensus 307 I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~-----~ 380 (536)
|++||+.++.... +.+|...|.+++|+|++ .+|++|+.|++|++||++ ++.+..+.+|...|.++.|+|.. .
T Consensus 89 v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEEECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999999987654 55789999999999998 899999999999999996 55677888999999999999853 2
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCc
Q 009380 381 NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGR 460 (536)
Q Consensus 381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 460 (536)
.+|++++.|+.|++||+++.+ ....+.+|...|.+++|+|+|++|++++.|+.|+|||+.+.+.+..+....
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---- 238 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQFQ----IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD---- 238 (319)
T ss_dssp CEEEEEETTSCEEEEETTTTE----EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS----
T ss_pred cEEEEEeCCCEEEEEECCcch----hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC----
Confidence 489999999999999998753 344566899999999999999999999999999999999988877775432
Q ss_pred eeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCc------eeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 461 WISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY------ISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 461 ~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~------~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
. ...++|+|++.+|++++.+ .+++|++.....+..+..+. .......++|+| ++.+|++|+.||.|+||+
T Consensus 239 ~--v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 239 E--VFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp C--EEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred c--EEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC-CCCEEEEeecCceEEEEE
Confidence 2 3448899999999988755 59999998876665554321 111224689999 679999999999999999
Q ss_pred c
Q 009380 535 S 535 (536)
Q Consensus 535 ~ 535 (536)
+
T Consensus 315 ~ 315 (319)
T 3frx_A 315 V 315 (319)
T ss_dssp E
T ss_pred E
Confidence 7
No 22
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.4e-40 Score=326.89 Aligned_cols=297 Identities=15% Similarity=0.174 Sum_probs=251.3
Q ss_pred ccccceecccccceeeeecCCCC-cccccccccccccccccccceEEecccccC------ccccccccCCceEEEEEEec
Q 009380 173 ENLGFVIKDEFNGFKTCKDEGLG-VGSCDLIKGVVKTEKIEVGSCVDIGSLTLK------PENIARIMPGRITQMKFLPC 245 (536)
Q Consensus 173 ~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~------~~~~~~~~~~~I~~v~~~p~ 245 (536)
+.+...+.+|...|.++.|++++ .+++ +++.|+.|++|++... +...+++|...|.+++|+|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~----------s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~- 75 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLL----------SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA- 75 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEE----------EEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT-
T ss_pred EEEEEEEccccceEEEEEccCCCccEEE----------EecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECC-
Confidence 45667899999999999999976 5666 4689999999997532 2334678999999999999
Q ss_pred CCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCC
Q 009380 246 SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEY 325 (536)
Q Consensus 246 ~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~ 325 (536)
++.+|++|+.|++|+|||+.+ +..+..+.+|...|.+++|+|++ .+|++++.|++|++||++......+.+|..
T Consensus 76 -dg~~l~s~s~D~~v~~wd~~~----~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~ 149 (319)
T 3frx_A 76 -DGAYALSASWDKTLRLWDVAT----GETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHND 149 (319)
T ss_dssp -TSSEEEEEETTSEEEEEETTT----TEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCEEEEECCCSS
T ss_pred -CCCEEEEEeCCCEEEEEECCC----CCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeccCC
Confidence 999999999999999999997 67888999999999999999998 999999999999999999888888888999
Q ss_pred ceeEEEecCCC-----CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 009380 326 AVFSLSQQPNN-----VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSM 400 (536)
Q Consensus 326 ~i~~l~~~~~~-----~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~ 400 (536)
.|.+++|.|.. ...+++++.|+.|++||+++++....+.+|...|.+++|+|++ .+|++|+.||.|++||+++.
T Consensus 150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTT
T ss_pred cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC
Confidence 99999999853 2489999999999999999999888999999999999999987 79999999999999999985
Q ss_pred CCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC---CCceeeeeEEEEcCCCCEEE
Q 009380 401 ATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ---TGRWISSFRAIWGWDDSCVF 477 (536)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~l~ 477 (536)
.......+...|.+++|+|++.+|++++.+ .+++|++........+..... .........++|+|+|++|+
T Consensus 229 -----~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 302 (319)
T 3frx_A 229 -----KAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302 (319)
T ss_dssp -----EEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEE
T ss_pred -----cEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEE
Confidence 334444566789999999999988887755 599999987655544432110 01111234588999999999
Q ss_pred EEcCCCcEEEEcCCcc
Q 009380 478 IGNMTRTVEVISPAQR 493 (536)
Q Consensus 478 ~gs~dg~I~v~d~~~~ 493 (536)
+|+.|+.|+|||+.++
T Consensus 303 sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 303 AGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEETTSCEEEEEEEEC
T ss_pred EeecCceEEEEEEeec
Confidence 9999999999998764
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.4e-40 Score=321.02 Aligned_cols=293 Identities=16% Similarity=0.179 Sum_probs=246.7
Q ss_pred ccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCCccEE
Q 009380 173 ENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMV 251 (536)
Q Consensus 173 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l 251 (536)
+.++.++.+|.+.|.++.|+|++..++ +++.||.|+|||+.... ......|...|.+++|+| ++++|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~----------s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l 70 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVL----------TTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA--RKNWI 70 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEE----------EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG--GGTEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEE----------EEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC--CCCEE
Confidence 456778999999999999999999988 45789999999985432 334567899999999999 99999
Q ss_pred EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC-eE-EEeecCCCceeE
Q 009380 252 VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE-VF-DLVYSSEYAVFS 329 (536)
Q Consensus 252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~-~~-~~~~~~~~~i~~ 329 (536)
++|+.|+.|++||+.+ +..+..+.+|...|.+++|+|++ .+|++|+.|++|++||++++ .. ..+.+|...|.+
T Consensus 71 ~s~s~d~~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~ 145 (304)
T 2ynn_A 71 IVGSDDFRIRVFNYNT----GEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145 (304)
T ss_dssp EEEETTSEEEEEETTT----CCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEE
T ss_pred EEECCCCEEEEEECCC----CcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEE
Confidence 9999999999999998 77888999999999999999998 99999999999999999876 33 345578999999
Q ss_pred EEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380 330 LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPR-NPNIMATSSTDGTACIWDLRSMATDKPEP 407 (536)
Q Consensus 330 l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~-~~~~l~s~s~dg~i~iwdl~~~~~~~~~~ 407 (536)
++|+|.++.+|++|+.||+|++||++++.....+. .|...+..+.|+|. +..+|++|+.|++|++||+++++ ..
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~----~~ 221 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS----CV 221 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE----EE
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc----cc
Confidence 99999666899999999999999999887766665 56688999999873 23699999999999999999853 45
Q ss_pred ceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC--EEEEEcCCCcE
Q 009380 408 MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS--CVFIGNMTRTV 485 (536)
Q Consensus 408 ~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~l~~gs~dg~I 485 (536)
..+.+|...|.+++|+|++.+|++++.||+|++||+.+++....+.... ..+ ..++|+|++. ++++|+.|| +
T Consensus 222 ~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~asg~~~g-~ 295 (304)
T 2ynn_A 222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL---ERS--WCIATHPTGRKNYIASGFDNG-F 295 (304)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS---SSE--EEEEECTTCGGGCEEEEETTE-E
T ss_pred eeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC---ccE--EEEEECCCCCceEEEEecCCc-e
Confidence 5666899999999999999999999999999999999988877774322 122 3367788775 577776554 7
Q ss_pred EEEcCCc
Q 009380 486 EVISPAQ 492 (536)
Q Consensus 486 ~v~d~~~ 492 (536)
.+|++..
T Consensus 296 ~~~~~~~ 302 (304)
T 2ynn_A 296 TVLSLGN 302 (304)
T ss_dssp EEEECC-
T ss_pred EEEEecc
Confidence 7777654
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.6e-40 Score=330.22 Aligned_cols=297 Identities=12% Similarity=0.123 Sum_probs=237.2
Q ss_pred cccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc-----ccccccCCceEEEEEEecCCccEEEEE
Q 009380 180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-----NIARIMPGRITQMKFLPCSDVRMVVAG 254 (536)
Q Consensus 180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-----~~~~~~~~~I~~v~~~p~~~~~~l~tg 254 (536)
..|...|.++.|+|||++|++......++ .|+.+.+|+...... .....|...|++++|+| ++.+ +++
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~----wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--d~~~-l~~ 111 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRT----WGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVS--EKGI-LVA 111 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSS----CCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEET--TTEE-EEE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCcc----ccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcC--CCCE-EEE
Confidence 46899999999999999999775444443 368899998643221 12245788999999999 8754 567
Q ss_pred eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCceeEEEec
Q 009380 255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQ 333 (536)
Q Consensus 255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~ 333 (536)
+.||+|+|||+.++...........+|...|.+++|+|++ .+|++|+.|+.|++||++++.....+ .|...|.+++|+
T Consensus 112 s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s 190 (357)
T 4g56_B 112 SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC 190 (357)
T ss_dssp ETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred ECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 7899999999987432223334566899999999999999 99999999999999999998766554 688999999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee
Q 009380 334 PNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL 411 (536)
Q Consensus 334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~ 411 (536)
+++..++++++.||.|++||+++++.+..+. .|...+.+++|+|++..+|++|+.|+.|++||+++++ ....+.
T Consensus 191 ~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~----~~~~~~ 266 (357)
T 4g56_B 191 PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD----SAQTSA 266 (357)
T ss_dssp TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG----GCEEEC
T ss_pred cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc----EeEEEe
Confidence 9987789999999999999999988766554 5677899999999888899999999999999999853 445566
Q ss_pred cccCceeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcC-CCCEEEEEcCCCcEEEEc
Q 009380 412 SHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGW-DDSCVFIGNMTRTVEVIS 489 (536)
Q Consensus 412 ~~~~~v~~l~~sp~g-~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~~gs~dg~I~v~d 489 (536)
.|...|++++|+|++ ++|++++.|++|+|||+.+++....+.|.. .+. .++|+| ++.+|++++.|+.|++|+
T Consensus 267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~----~V~--~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRD----FVT--GVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSS----CEE--EEEECSSSTTEEEEEETTSCEEEEE
T ss_pred ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCC----CEE--EEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 899999999999987 679999999999999999887766654432 344 478998 799999999999999999
Q ss_pred CCccc
Q 009380 490 PAQRR 494 (536)
Q Consensus 490 ~~~~~ 494 (536)
+.+..
T Consensus 341 ~~~~~ 345 (357)
T 4g56_B 341 LPSEG 345 (357)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 97643
No 25
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-40 Score=329.05 Aligned_cols=295 Identities=17% Similarity=0.240 Sum_probs=232.6
Q ss_pred ccccCC-ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCc-eEEeccCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380 230 ARIMPG-RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNG-IYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLI 307 (536)
Q Consensus 230 ~~~~~~-~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I 307 (536)
+..|.+ .|++++|+| ++.+|++|+.||+|+||++.... ... .....+|...|.+++|+|++ ++|++|+.|++|
T Consensus 11 ~~~h~~~~v~~l~~sp--~g~~las~~~D~~i~iw~~~~~~--~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~D~~v 85 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNP--AGTLLASCGGDRRIRIWGTEGDS--WICKSVLSEGHQRTVRKVAWSPCG-NYLASASFDATT 85 (345)
T ss_dssp ECCSTTSCEEEEEECT--TSSCEEEEETTSCEEEEEEETTE--EEEEEEECSSCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred ecCCCCCcEEEEEECC--CCCEEEEEcCCCeEEEEEcCCCc--ceeeeeeccccCCcEEEEEECCCC-CEEEEEECCCcE
Confidence 467877 999999999 99999999999999999998621 011 22346899999999999998 999999999999
Q ss_pred EEEECCCCeE---EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc---ceeEeccCCCeEEEEEecCCCC
Q 009380 308 RLMDAEKEVF---DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS---ATEWLLHEARINTIDFNPRNPN 381 (536)
Q Consensus 308 ~vwd~~~~~~---~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~h~~~i~~i~~~p~~~~ 381 (536)
++||+..+.. ..+.+|...|.+++|+|++ ++|++|+.|+.|++||++++.. +..+..|...|.+++|+|++ .
T Consensus 86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~ 163 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ-E 163 (345)
T ss_dssp EEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS-S
T ss_pred EEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC-C
Confidence 9999987642 3455789999999999998 8999999999999999987643 56677899999999999987 6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceE----------
Q 009380 382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSM---------- 451 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~---------- 451 (536)
+|++|+.|+.|++||++... ......+.+|...|++++|+|+|++|++++.|++|+|||.........
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~--~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~ 241 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDD--WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241 (345)
T ss_dssp CEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred EEEEEeCCCcEEEEEecCCC--EEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence 99999999999999988642 012234558999999999999999999999999999999643221110
Q ss_pred --E-eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc----c----eeccCCceeeeeeeEeecCCCCCE
Q 009380 452 --I-HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS----V----ATLQSPYISAIPCRFHAHPHQVGT 520 (536)
Q Consensus 452 --~-~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~----~----~~l~~~~~~~~~~~~~~~p~~~~~ 520 (536)
+ ........ .+..++|++++..|++++.|+.|++|+...... . ......|...+ ..++|+|....+
T Consensus 242 ~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~v~~~p~~~~~ 318 (345)
T 3fm0_A 242 KCICTLSGFHSR--TIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDV-NCVAWNPKEPGL 318 (345)
T ss_dssp EEEEEECSSCSS--CEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCE-EEEEECSSSTTE
T ss_pred ceeEEecCCCCC--cEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcE-eEeEEeCCCceE
Confidence 0 00111122 234578999999999999999999999875431 1 11112233344 468999965569
Q ss_pred EEEEccCCeEEEEecC
Q 009380 521 LAGATGGGQVYVWTSD 536 (536)
Q Consensus 521 lasgs~Dg~v~iW~~d 536 (536)
||+|+.||.|+||+++
T Consensus 319 laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 319 LASCSDDGEVAFWKYQ 334 (345)
T ss_dssp EEEEETTSCEEEEEEC
T ss_pred EEEcCCCCcEEEEEec
Confidence 9999999999999974
No 26
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5e-40 Score=326.65 Aligned_cols=307 Identities=12% Similarity=0.091 Sum_probs=243.5
Q ss_pred cccceeccccc-ceeeeecCCCCcccccccccccccccccccceEEecccccCc----cccccccCCceEEEEEEecCCc
Q 009380 174 NLGFVIKDEFN-GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP----ENIARIMPGRITQMKFLPCSDV 248 (536)
Q Consensus 174 ~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~----~~~~~~~~~~I~~v~~~p~~~~ 248 (536)
.+...+.+|.+ .|.++.|+|+|++++ +++.|+.|+||++.... .....+|.+.|.+++|+| ++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~la----------s~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~g 73 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLA----------SCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP--CG 73 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEE----------EEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT--TS
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEE----------EEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC--CC
Confidence 44567889988 999999999999999 45889999999985442 123367999999999999 99
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe----EEEeecCC
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV----FDLVYSSE 324 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~----~~~~~~~~ 324 (536)
.+|++|+.|++|+||++.... ...+..+.+|...|.+++|+|++ ++|++|+.|++|++||+.++. ...+..|.
T Consensus 74 ~~l~s~s~D~~v~iw~~~~~~--~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~ 150 (345)
T 3fm0_A 74 NYLASASFDATTCIWKKNQDD--FECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT 150 (345)
T ss_dssp SEEEEEETTSCEEEEEECCC---EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEECCCC
T ss_pred CEEEEEECCCcEEEEEccCCC--eEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEecCcC
Confidence 999999999999999987632 24677889999999999999998 999999999999999998753 23345688
Q ss_pred CceeEEEecCCCCCEEEEEECCCeEEEEECCCCc--cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009380 325 YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK--SATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT 402 (536)
Q Consensus 325 ~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~ 402 (536)
..|.+++|+|++ .+|++|+.|+.|++||+++++ +...+.+|...|.+++|+|++ .+|++|+.|++|+|||......
T Consensus 151 ~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~ 228 (345)
T 3fm0_A 151 QDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGN 228 (345)
T ss_dssp SCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTC
T ss_pred CCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCC
Confidence 999999999998 799999999999999998875 356788999999999999987 7999999999999999754321
Q ss_pred CCCC-----------cceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc----ceEEe-c-cCCCCceeee
Q 009380 403 DKPE-----------PMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN----TSMIH-H-NNQTGRWISS 464 (536)
Q Consensus 403 ~~~~-----------~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~----~~~~~-~-~~~~~~~~~~ 464 (536)
.... ..... .|...|.+++|+|++..|++++.|+.|++|+...... ...+. + ....... +
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~--V 306 (345)
T 3fm0_A 229 EQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD--V 306 (345)
T ss_dssp TTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC--E
T ss_pred CccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc--E
Confidence 1100 11122 2888999999999999999999999999999865432 11121 1 1122223 3
Q ss_pred eEEEEcCCC-CEEEEEcCCCcEEEEcCCccccceec
Q 009380 465 FRAIWGWDD-SCVFIGNMTRTVEVISPAQRRSVATL 499 (536)
Q Consensus 465 ~~~~~s~~g-~~l~~gs~dg~I~v~d~~~~~~~~~l 499 (536)
.+++|+|++ .+|++|+.||.|++|++.+++.+..+
T Consensus 307 ~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 307 NCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred eEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 448899987 48999999999999999988766544
No 27
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.7e-39 Score=322.51 Aligned_cols=297 Identities=14% Similarity=0.153 Sum_probs=243.5
Q ss_pred ccccceecccccceeeeec-----CC-CCcccccccccccccccccccceEEecccccC--------ccccccccCCceE
Q 009380 173 ENLGFVIKDEFNGFKTCKD-----EG-LGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK--------PENIARIMPGRIT 238 (536)
Q Consensus 173 ~~~~~~~~~~~~~v~~~~~-----s~-~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~--------~~~~~~~~~~~I~ 238 (536)
+.....+.+|.+.|.++.| ++ ++.+++ +++.|+.|+||++... +...+.+|...|+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~----------sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~ 80 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLI----------SGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS 80 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEE----------EEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEE----------EEcCCCEEEEEECCcCCcccccccccchhccCCCceE
Confidence 3456678999999999998 66 788777 5688999999998532 2234578999999
Q ss_pred EEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE
Q 009380 239 QMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD 318 (536)
Q Consensus 239 ~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~ 318 (536)
+++|+| ++.+|++|+.|++|++||+.+ +..+..+.+|...|.+++|+|++ .+|++++.|++|++||+......
T Consensus 81 ~~~~~~--~~~~l~s~s~D~~v~lwd~~~----~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~ 153 (343)
T 2xzm_R 81 DLALSQ--ENCFAISSSWDKTLRLWDLRT----GTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKF 153 (343)
T ss_dssp EEEECS--STTEEEEEETTSEEEEEETTS----SCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEE
T ss_pred EEEECC--CCCEEEEEcCCCcEEEEECCC----CcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCcee
Confidence 999999 999999999999999999997 67888999999999999999998 99999999999999999865444
Q ss_pred Eee---cCCCceeEEEecCCCC---------CEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380 319 LVY---SSEYAVFSLSQQPNNV---------NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386 (536)
Q Consensus 319 ~~~---~~~~~i~~l~~~~~~~---------~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~ 386 (536)
... .|...|.+++|+|++. .+|++++.||.|++|| ...+....+.+|...|.+++|+|++ .+|++|
T Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~sg 231 (343)
T 2xzm_R 154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNG-KYIATG 231 (343)
T ss_dssp ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCC-CEEEEE
Confidence 333 5778999999999862 5899999999999999 4556677888999999999999987 799999
Q ss_pred eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcce--EEeccC------CC
Q 009380 387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTS--MIHHNN------QT 458 (536)
Q Consensus 387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~--~~~~~~------~~ 458 (536)
+.||.|++||++... .......+...|.+++|+|++.++++ +.|+.|++||+.+.+... .+.... ..
T Consensus 232 s~dg~v~iwd~~~~~----~~~~~~~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 232 GKDKKLLIWDILNLT----YPQREFDAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp ETTCEEEEEESSCCS----SCSEEEECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred cCCCeEEEEECCCCc----ccceeecCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 999999999996532 33444556678999999999987765 558889999998776554 222100 00
Q ss_pred CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 459 GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 459 ~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
+....+..++|+|+|++|++|+.||.|++|++.++
T Consensus 307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 11122345889999999999999999999998765
No 28
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.5e-40 Score=334.90 Aligned_cols=304 Identities=18% Similarity=0.159 Sum_probs=251.8
Q ss_pred ccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEE
Q 009380 173 ENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMV 251 (536)
Q Consensus 173 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l 251 (536)
......+.+|...|.++.|+|+++.++ +++.||.|+|||+... .....+.|...|.+++|+| ++.+|
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~----------s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l 123 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIV----------SASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP--NGQSV 123 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEE----------EEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECT--TSSEE
T ss_pred eEEeecccccccEEEEEEEcCCCCEEE----------EEeCCCeEEEEECCCCccceEEecCCCCEEEEEECC--CCCEE
Confidence 344567899999999999999999988 4588999999997543 3345678999999999999 99999
Q ss_pred EEEeCCCcEEEEECCCCCC---CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee------c
Q 009380 252 VAGSKLGNITFWNLDSQQD---EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY------S 322 (536)
Q Consensus 252 ~tg~~dg~v~iwd~~~~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~------~ 322 (536)
++|+.|+.|++|++..... .......+.+|.+.|.++.|+|++...|++|+.|++|++||+.++.....+ +
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~ 203 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG 203 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSS
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCC
Confidence 9999999999999975321 123456788999999999999987578999999999999999998766544 5
Q ss_pred CCCceeEEEecCCCCCEEEEEECCCeEEEEECC-CCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCC
Q 009380 323 SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR-SRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMA 401 (536)
Q Consensus 323 ~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~ 401 (536)
|...|.+++|++.+.++|++|+.||.|++||++ .+..+..+.+|...|++++|+|++ .+|++|+.||+|++||++++.
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTE
T ss_pred CccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCc
Confidence 778999999988555899999999999999998 457788899999999999999987 799999999999999999853
Q ss_pred CCCCCcceeec-------ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc-CCCCceeeeeEEEEcCCC
Q 009380 402 TDKPEPMKVLS-------HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN-NQTGRWISSFRAIWGWDD 473 (536)
Q Consensus 402 ~~~~~~~~~~~-------~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~g 473 (536)
....+.. +...|++++|+|+|.+|++|+.||.|++||+..++....+... ......+. +++|+|+|
T Consensus 283 ----~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~--~l~~s~dg 356 (380)
T 3iz6_a 283 ----QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRIS--CLGLSSDG 356 (380)
T ss_dssp ----EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCC--EEEECSSS
T ss_pred ----EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceE--EEEECCCC
Confidence 1111111 2335899999999999999999999999999888776665321 12222333 47899999
Q ss_pred CEEEEEcCCCcEEEEcCCcccc
Q 009380 474 SCVFIGNMTRTVEVISPAQRRS 495 (536)
Q Consensus 474 ~~l~~gs~dg~I~v~d~~~~~~ 495 (536)
.+|++|+.|+.|+||++.+.+.
T Consensus 357 ~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 357 SALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp SEEEEECTTSCEEEEECCSSSS
T ss_pred CEEEEeeCCCCEEEEecCCCcc
Confidence 9999999999999999987643
No 29
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.5e-39 Score=317.91 Aligned_cols=322 Identities=11% Similarity=0.118 Sum_probs=261.8
Q ss_pred cccceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCCccEEEEEeCCCcE
Q 009380 182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNI 260 (536)
Q Consensus 182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v 260 (536)
|...|.++.++|||+.++... .++.+.+|...... ......|.+.|++++|+| ++.+|++++ ||.|
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~-dg~i 74 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPF----------PPDALIGPGIPRHARQINTLNHGEVVCAVTISN--PTRHVYTGG-KGCV 74 (337)
T ss_dssp EEEECCEEEECSSSCEEECCC----------CTTSSSSTTCCSEEEEEEEECCSSCCCEEEECS--SSSEEEEEC-BSEE
T ss_pred cCCceeEEEECCCCCEEEeec----------CCCcEeccccCCccccceeccCCCceEEEEEec--CCcEEEEcC-CCeE
Confidence 457889999999999998542 22233444432221 222346899999999999 999999999 9999
Q ss_pred EEEECCCCCCCCCceEEec--cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe---EEEeecCCCceeEEEecCC
Q 009380 261 TFWNLDSQQDEDNGIYLFR--THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV---FDLVYSSEYAVFSLSQQPN 335 (536)
Q Consensus 261 ~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~---~~~~~~~~~~i~~l~~~~~ 335 (536)
++|++..... ...+..+. .|...|.+++|+|++ ++|++++.||.|++||+.++. ......|...|.+++|+|+
T Consensus 75 ~iw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 152 (337)
T 1gxr_A 75 KVWDISHPGN-KSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152 (337)
T ss_dssp EEEETTSTTC-CSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT
T ss_pred EEEECCCCCc-eeeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCC
Confidence 9999987432 22333333 799999999999998 999999999999999999875 2344567889999999998
Q ss_pred CCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC
Q 009380 336 NVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR 415 (536)
Q Consensus 336 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~ 415 (536)
+ +++++++.||.|++||+++++.+..+..|...|.+++|+|++ .+|++++.||.|++||++++ .......+..
T Consensus 153 ~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~-----~~~~~~~~~~ 225 (337)
T 1gxr_A 153 S-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREG-----RQLQQHDFTS 225 (337)
T ss_dssp S-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTT-----EEEEEEECSS
T ss_pred C-CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCC-----ceEeeecCCC
Confidence 8 899999999999999999999999999999999999999977 79999999999999999985 3445557889
Q ss_pred ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380 416 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS 495 (536)
Q Consensus 416 ~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~ 495 (536)
.+.+++|+|++++|++++.|+.|++||+.+.+......| ...+. .+.|+|++++|++++.|+.|++|++.+++.
T Consensus 226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~----~~~v~--~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH----ESCVL--SLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCC----SSCEE--EEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCC----cccee--EEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence 999999999999999999999999999988765432222 22233 477999999999999999999999999887
Q ss_pred ceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 496 VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 496 ~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
+.... +. ..+ ..+.|+| ++.+|++++.||.|++|++
T Consensus 300 ~~~~~-~~-~~v-~~~~~s~-~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 300 IFQSK-ES-SSV-LSCDISV-DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEE-CS-SCE-EEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred EEEec-CC-CcE-EEEEECC-CCCEEEEecCCCeEEEEEE
Confidence 75443 22 233 4678888 5699999999999999996
No 30
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.7e-39 Score=323.95 Aligned_cols=292 Identities=18% Similarity=0.173 Sum_probs=247.2
Q ss_pred cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEE
Q 009380 174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVV 252 (536)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~ 252 (536)
.....+.+|.+.|.++.|+|+++.++ +++.||.|++||.... .......|...|.+++|+| ++.+|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~----------s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp--~g~~la 122 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIV----------SSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP--SGCAIA 122 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEE----------EEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECT--TSSEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEE----------EEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECC--CCCEEE
Confidence 34567899999999999999999888 5589999999997433 2334566788999999999 999999
Q ss_pred EEeCCCcEEEEECCCCCC--CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeE
Q 009380 253 AGSKLGNITFWNLDSQQD--EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFS 329 (536)
Q Consensus 253 tg~~dg~v~iwd~~~~~~--~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~ 329 (536)
+|+.|+.+++|++..... .......+.+|...|.++.|+|++ ..|++++.|++|++||++++.... +.+|...|.+
T Consensus 123 sg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~ 201 (354)
T 2pbi_B 123 CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFHGHGADVLC 201 (354)
T ss_dssp EESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEE
Confidence 999999999999875321 123556778899999999999998 999999999999999999987654 4468899999
Q ss_pred EEecCCC-CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc
Q 009380 330 LSQQPNN-VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM 408 (536)
Q Consensus 330 l~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~ 408 (536)
++|+|+. +++|++|+.||.|++||+++++++..+..|...|++++|+|++ .+|++|+.|++|++||++... ..
T Consensus 202 ~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~-----~~ 275 (354)
T 2pbi_B 202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADR-----EV 275 (354)
T ss_dssp EEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE-----EE
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc-----EE
Confidence 9998853 3799999999999999999999999999999999999999987 799999999999999998742 22
Q ss_pred eee---cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380 409 KVL---SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV 485 (536)
Q Consensus 409 ~~~---~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I 485 (536)
... .+...+.+++|+|+|.+|++++.|+.|++||+.+++.+..+..+ ...+. .++|+|+|.+|++|+.|+.|
T Consensus 276 ~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h---~~~v~--~l~~spdg~~l~sgs~D~~v 350 (354)
T 2pbi_B 276 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH---ENRVS--TLRVSPDGTAFCSGSWDHTL 350 (354)
T ss_dssp EEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC---SSCEE--EEEECTTSSCEEEEETTSEE
T ss_pred EEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC---CCcEE--EEEECCCCCEEEEEcCCCCE
Confidence 222 23457899999999999999999999999999888877665321 22333 47899999999999999999
Q ss_pred EEEc
Q 009380 486 EVIS 489 (536)
Q Consensus 486 ~v~d 489 (536)
+||+
T Consensus 351 ~vW~ 354 (354)
T 2pbi_B 351 RVWA 354 (354)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9996
No 31
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.9e-39 Score=324.27 Aligned_cols=287 Identities=19% Similarity=0.271 Sum_probs=231.7
Q ss_pred ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC------------------CCEEEEEEecC
Q 009380 232 IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL------------------GPISGIVTQQY 293 (536)
Q Consensus 232 ~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~------------------~~V~~l~~~~~ 293 (536)
.|.+.|++++|+| +|++|++|+ ++.++||++.+ +..+..+..|. ..|.+++|+|+
T Consensus 62 ~h~~~V~~v~fsp--dg~~la~g~-~~~v~i~~~~~----g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 62 DHTSVVCCVKFSN--DGEYLATGC-NKTTQVYRVSD----GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp ECSSCCCEEEECT--TSSEEEEEC-BSCEEEEETTT----CCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred CCCCEEEEEEECC--CCCEEEEEc-CCcEEEEEecC----CCEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence 5899999999999 999999987 68999999987 55555555443 24999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEE
Q 009380 294 CLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINT 372 (536)
Q Consensus 294 ~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~ 372 (536)
+ .+|++|+.|+.|++||+.++.... +.+|...|.+++|+|++ .+|++++.|++|++||+++++....+. +...+.+
T Consensus 135 g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~ 211 (393)
T 1erj_A 135 G-KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTT 211 (393)
T ss_dssp S-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEE
T ss_pred C-CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEE
Confidence 9 999999999999999999887654 45688999999999998 899999999999999999998877776 6778999
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee-------ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380 373 IDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV-------LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 373 i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~-------~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~ 445 (536)
++|+|.++.+|++|+.||.|++||++++. ....+ .+|...|.+++|+|+|.+|++++.|+.|++||+++
T Consensus 212 ~~~~~~~~~~l~~~s~d~~v~iwd~~~~~----~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGF----LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EEECSTTCCEEEEEETTSCEEEEETTTCC----EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCc----EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 99999545899999999999999998853 12122 46899999999999999999999999999999976
Q ss_pred CCcceEEe---------ccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCC
Q 009380 446 FENTSMIH---------HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPH 516 (536)
Q Consensus 446 ~~~~~~~~---------~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~ 516 (536)
........ ........ +..++|++++.+|++|+.|+.|++||..+++.+..+.+|...+. .++|+|.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~--~v~~~~~ 363 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHKDF--VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI--SVAVANG 363 (393)
T ss_dssp -------------CEEEEEECCSSC--EEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE--EEEECSS
T ss_pred CCCcccccCCCCCcceEEEecccCc--EEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEE--EEEecCC
Confidence 43221110 00011112 34478999999999999999999999999999999988776655 3455441
Q ss_pred -----CCCEEEEEccCCeEEEEecC
Q 009380 517 -----QVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 517 -----~~~~lasgs~Dg~v~iW~~d 536 (536)
++.+|++|+.||.|+||+++
T Consensus 364 ~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 364 SSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp CTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred cCcCCCCCEEEEECCCCcEEECccc
Confidence 46899999999999999863
No 32
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.8e-39 Score=324.78 Aligned_cols=295 Identities=25% Similarity=0.396 Sum_probs=243.0
Q ss_pred cccccCCceEEEEEEecCCc-cEEEEEeCCCcEEEEECCCCCCCCCceEEec--cCCCCEEEEEEecCCCCEEEEEECCC
Q 009380 229 IARIMPGRITQMKFLPCSDV-RMVVAGSKLGNITFWNLDSQQDEDNGIYLFR--THLGPISGIVTQQYCLSKIFTSCYDG 305 (536)
Q Consensus 229 ~~~~~~~~I~~v~~~p~~~~-~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg 305 (536)
....|.+.|++++|+| ++ .+|++|+.||.|+|||+.+ ......+. +|...|.+++|+|++..+|++++.|+
T Consensus 68 ~~~~h~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHP--THPTTVAVGSKGGDIILWDYDV----QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp EECCCSSCEEEEEECS--SCTTEEEEEEBTSCEEEEETTS----TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred eccCCCCCEEEEEECC--CCCCEEEEEcCCCeEEEEeCCC----cccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 4578999999999999 88 8999999999999999987 44444444 69999999999994338999999999
Q ss_pred eEEEEECCCCeEEEeecC---CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCE
Q 009380 306 LIRLMDAEKEVFDLVYSS---EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNI 382 (536)
Q Consensus 306 ~I~vwd~~~~~~~~~~~~---~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~ 382 (536)
.|++||+.+........+ ...|.+++|+|++ .+|++|+.||.|++||+ +++.+..+..|...|.+++|+|++..+
T Consensus 142 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 142 ATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EEEEEETTSCEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred EEEEEECCCCceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence 999999998766655544 4789999999998 89999999999999999 577888899999999999999988659
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEe-ccCCCCc
Q 009380 383 MATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIH-HNNQTGR 460 (536)
Q Consensus 383 l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~ 460 (536)
|++++.|+.|++||+++.+.. ........|...|.+++|+| ++.+|++++.|+.|++||+++++....+. +......
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 298 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDK-NSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ 298 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCST-TCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred EEEEeCCCEEEEEeCCCCCcc-cceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence 999999999999999985422 23445558999999999999 99999999999999999999888776664 2211111
Q ss_pred eee-----------eeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCe
Q 009380 461 WIS-----------SFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQ 529 (536)
Q Consensus 461 ~~~-----------~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~ 529 (536)
... .+.+.|+|++++ +|+.|+.|++||+.+++.+..+.+++...+...++|+| ++.+|++|+ ||.
T Consensus 299 ~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 299 HLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-GFN 374 (383)
T ss_dssp TSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-TTE
T ss_pred cccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEec-CCc
Confidence 111 122455666665 67789999999999999999998765444445678999 569999997 999
Q ss_pred EEEEecC
Q 009380 530 VYVWTSD 536 (536)
Q Consensus 530 v~iW~~d 536 (536)
|+|||++
T Consensus 375 i~iw~~~ 381 (383)
T 3ei3_B 375 ILIWNRE 381 (383)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999985
No 33
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-39 Score=319.54 Aligned_cols=294 Identities=16% Similarity=0.205 Sum_probs=221.8
Q ss_pred ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEe-cc-CCCCEEEEEEecCCCCEEEEEECCC
Q 009380 228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLF-RT-HLGPISGIVTQQYCLSKIFTSCYDG 305 (536)
Q Consensus 228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~-~~-h~~~V~~l~~~~~~~~~l~s~s~dg 305 (536)
..+++|.+.|++++|+| + +|++|+.||.|++|++.... ......+ .+ |...|.+++|+|++ .+|++++.|+
T Consensus 8 ~~~~~h~~~v~~~~~s~--~--~las~~~D~~i~lw~~~~~~--~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~ 80 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQ--G--ILATGSTDRKIKLVSVKYDD--FTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDS 80 (330)
T ss_dssp EEEECCSSCEEEEEEET--T--EEEEEESSSCEEEEECSSSC--CEEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTS
T ss_pred eeeccCCCceeeeccCC--C--EEEEEcCCCEEEEEEecCCC--eEEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCC
Confidence 34578999999999998 5 99999999999999998632 2334444 44 99999999999998 9999999999
Q ss_pred eEEEEECCCC-------e-EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC----ccceeEeccCCCeEEE
Q 009380 306 LIRLMDAEKE-------V-FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR----KSATEWLLHEARINTI 373 (536)
Q Consensus 306 ~I~vwd~~~~-------~-~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~----~~~~~~~~h~~~i~~i 373 (536)
+|++||+... . ...+.+|...|.+++|+|++ ++|++|+.|++|++||++.. +++..+.+|...|.++
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v 159 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV 159 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence 9999998532 2 23455789999999999998 89999999999999999532 3466788999999999
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC--CCeEEEEeCCCcEEEEeCCCCCcc--
Q 009380 374 DFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS--GSSLATTSFDDTIGIWSGVNFENT-- 449 (536)
Q Consensus 374 ~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~--g~~l~t~s~dg~I~iwd~~~~~~~-- 449 (536)
+|+|++ .+|++|+.|++|++||++... ......+.+|...|.+++|+|+ +.+|++++.|++|++||+......
T Consensus 160 ~~~p~~-~~l~s~s~D~~i~iW~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 160 IWHPSE-ALLASSSYDDTVRIWKDYDDD--WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp EECSSS-SEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred EECCCC-CEEEEEcCCCeEEEEECCCCC--eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 999987 799999999999999987631 1123445589999999999998 678999999999999998654211
Q ss_pred ---eEEe-ccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc--cceec-cCCceeeeeeeEeecCC-CCCEE
Q 009380 450 ---SMIH-HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR--SVATL-QSPYISAIPCRFHAHPH-QVGTL 521 (536)
Q Consensus 450 ---~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~--~~~~l-~~~~~~~~~~~~~~~p~-~~~~l 521 (536)
.... ........+ ..++|++++ +|++++.|+.|++|+..+++ .+... .+|....+ ..++|+|. ++.+|
T Consensus 237 ~~~~~~~~~~~~h~~~v--~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v-~~v~~~~~~~~~~l 312 (330)
T 2hes_X 237 QEWVCEAILPDVHKRQV--YNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEI-NVVKWLELNGKTIL 312 (330)
T ss_dssp EEEEEEEECCSCCSSCE--EEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCE-EEEEEC-----CCE
T ss_pred ceeEEeeecccccccce--EEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceE-EEEEEecCCCceEE
Confidence 1111 111122233 347788665 89999999999999988763 33333 33433133 46788885 56899
Q ss_pred EEEccCCeEEEEecC
Q 009380 522 AGATGGGQVYVWTSD 536 (536)
Q Consensus 522 asgs~Dg~v~iW~~d 536 (536)
++|+.||.|+||+++
T Consensus 313 as~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 313 ATGGDDGIVNFWSLE 327 (330)
T ss_dssp EEEETTSEEEEEEC-
T ss_pred EEecCCCcEEEEEec
Confidence 999999999999974
No 34
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-38 Score=316.24 Aligned_cols=292 Identities=15% Similarity=0.212 Sum_probs=233.5
Q ss_pred cccccccCCceEEEEE-----EecCCccEEEEEeCCCcEEEEECCCCCCC---CCceEEeccCCCCEEEEEEecCCCCEE
Q 009380 227 ENIARIMPGRITQMKF-----LPCSDVRMVVAGSKLGNITFWNLDSQQDE---DNGIYLFRTHLGPISGIVTQQYCLSKI 298 (536)
Q Consensus 227 ~~~~~~~~~~I~~v~~-----~p~~~~~~l~tg~~dg~v~iwd~~~~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~~l 298 (536)
...+++|.+.|++++| ++. ++.+|++|+.|++|+|||+...... ......+.+|...|.+++|+|++ .+|
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~-d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~l 91 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENE-DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CFA 91 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTC-CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-TEE
T ss_pred eeeeccchhhhhheeeEEEeecCC-CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-CEE
Confidence 3456899999999999 432 7889999999999999999753211 23456788999999999999998 999
Q ss_pred EEEECCCeEEEEECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe---ccCCCeEEEE
Q 009380 299 FTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL---LHEARINTID 374 (536)
Q Consensus 299 ~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---~h~~~i~~i~ 374 (536)
++++.|++|++||++++... .+.+|...|.+++|+|++ ++|++++.|+.|++||+... ...... .|...|.+++
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeee
Confidence 99999999999999988665 455789999999999998 89999999999999999843 322222 6889999999
Q ss_pred EecCCC---------CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380 375 FNPRNP---------NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 375 ~~p~~~---------~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~ 445 (536)
|+|++. .+|++++.||.|++||... .....+.+|...|.+++|+|+|++|++++.|+.|++||+..
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred eccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 999762 5899999999999999543 23445568999999999999999999999999999999954
Q ss_pred C-CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccce--eccC----------CceeeeeeeEe
Q 009380 446 F-ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVA--TLQS----------PYISAIPCRFH 512 (536)
Q Consensus 446 ~-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~--~l~~----------~~~~~~~~~~~ 512 (536)
. .....+.+. ..+ ..++|+|++.+|++| .|+.|++|++.+++... .+.. .|...+ ..++
T Consensus 245 ~~~~~~~~~~~----~~v--~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~ 316 (343)
T 2xzm_R 245 LTYPQREFDAG----STI--NQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQC-TSLA 316 (343)
T ss_dssp CSSCSEEEECS----SCE--EEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCE-EEEE
T ss_pred CcccceeecCC----CcE--EEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCce-EEEE
Confidence 3 344444332 123 347899999887765 57789999998876544 3331 122223 5789
Q ss_pred ecCCCCCEEEEEccCCeEEEEecC
Q 009380 513 AHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 513 ~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
|+| ++.+|++|+.||.|++|+++
T Consensus 317 ~sp-~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 317 WNA-LGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp ECS-SSCCEEEEETTSEEEEEEEE
T ss_pred ECC-CCCeEEEecCCceEEEEEEE
Confidence 999 57999999999999999974
No 35
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-38 Score=311.58 Aligned_cols=287 Identities=14% Similarity=0.158 Sum_probs=251.5
Q ss_pred cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380 229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR 308 (536)
Q Consensus 229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~ 308 (536)
.+.+|.+.|++++|+| ++++|++|+.||.|++||+.+ ...+..+.+|...|.+++|+|++ ++|++++.||.|+
T Consensus 27 ~l~~h~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNK--EGDLLFSCSKDSSASVWYSLN----GERLGTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIK 99 (369)
T ss_dssp EEECCSSCEEEEEECT--TSCEEEEEESSSCEEEEETTT----CCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEE
T ss_pred EEEEeeceEEEEEEcC--CCCEEEEEeCCCEEEEEeCCC----chhhhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeEE
Confidence 3578999999999999 999999999999999999987 77888999999999999999998 9999999999999
Q ss_pred EEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECC-----CeEEEEECCCCcc-----------ceeEeccCC--Ce
Q 009380 309 LMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ-----GGLNIWDVRSRKS-----------ATEWLLHEA--RI 370 (536)
Q Consensus 309 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~~-----------~~~~~~h~~--~i 370 (536)
+||+.++.....+.+...|.+++|+|++ .++++++.+ |.|.+||+..+.. +..+..|.. .+
T Consensus 100 iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 100 LWDVSNGQCVATWKSPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred EEECCCCcEEEEeecCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 9999999888888899999999999998 899999998 9999999987643 344455665 89
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcce
Q 009380 371 NTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTS 450 (536)
Q Consensus 371 ~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~ 450 (536)
.+++|+|++ .+|++++.||.|++||+++.. .....+..|...|.+++|+|++.+|++++.|+.|++||+.+++...
T Consensus 179 ~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 179 TVAGWSTKG-KYIIAGHKDGKISKYDVSNNY---EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp EEEEECGGG-CEEEEEETTSEEEEEETTTTT---EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred eEEEEcCCC-CEEEEEcCCCEEEEEECCCCc---EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 999999977 699999999999999998731 2344555799999999999999999999999999999999988887
Q ss_pred EEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC--------------cEEEEcCCccccceeccCCceeeeeeeEeecCC
Q 009380 451 MIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR--------------TVEVISPAQRRSVATLQSPYISAIPCRFHAHPH 516 (536)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg--------------~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~ 516 (536)
.+.+.. .+. .+.|+|++.++++++.++ .|++||..+++.+..+.+|...+ ..++|+|
T Consensus 255 ~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v--~~~~~s~- 325 (369)
T 3zwl_B 255 KYETDC----PLN--TAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPL--NTVAISP- 325 (369)
T ss_dssp EEECSS----CEE--EEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCE--EEEEECT-
T ss_pred eecCCC----Cce--eEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcE--EEEEECC-
Confidence 776322 233 377999999999999888 89999999999999888766544 3688999
Q ss_pred CCCEEEEEccCCeEEEEecC
Q 009380 517 QVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 517 ~~~~lasgs~Dg~v~iW~~d 536 (536)
++.+|++++.||.|+||+++
T Consensus 326 ~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 326 QGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp TSSEEEEEETTSEEEEEEEC
T ss_pred CCCEEEEEcCCCeEEEEECc
Confidence 67999999999999999974
No 36
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-38 Score=314.48 Aligned_cols=300 Identities=14% Similarity=0.135 Sum_probs=227.8
Q ss_pred cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc---ccc-cc-cCCceEEEEEEecCCc
Q 009380 174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE---NIA-RI-MPGRITQMKFLPCSDV 248 (536)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~---~~~-~~-~~~~I~~v~~~p~~~~ 248 (536)
++...+.+|.+.|.++.|+++ +++ +++.|+.|+||++..... ... .. |.+.|++++|+| ++
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~la----------s~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~ 70 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILA----------TGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP--HT 70 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEE----------EEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT--TS
T ss_pred ccceeeccCCCceeeeccCCC--EEE----------EEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC--CC
Confidence 345678999999999999987 555 458899999999865321 222 33 899999999999 99
Q ss_pred cEEEEEeCCCcEEEEECCCCC---CCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC----eE-EEe
Q 009380 249 RMVVAGSKLGNITFWNLDSQQ---DEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE----VF-DLV 320 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~---~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~----~~-~~~ 320 (536)
.+|++|+.|++|+||++.... .....+..+.+|...|.+++|+|++ .+|++|+.|++|++||+... .. ..+
T Consensus 71 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~ 149 (330)
T 2hes_X 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVL 149 (330)
T ss_dssp SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEE
T ss_pred CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEe
Confidence 999999999999999986421 1134567789999999999999998 99999999999999999532 22 345
Q ss_pred ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC--ccceeEeccCCCeEEEEEecCC-CCEEEEEeCCCcEEEEeC
Q 009380 321 YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR--KSATEWLLHEARINTIDFNPRN-PNIMATSSTDGTACIWDL 397 (536)
Q Consensus 321 ~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~--~~~~~~~~h~~~i~~i~~~p~~-~~~l~s~s~dg~i~iwdl 397 (536)
..|...|.+++|+|++ .+|++|+.|++|++||+.++ +++..+.+|...|.+++|+|++ ..+|++|+.|++|++||+
T Consensus 150 ~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 150 QEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp CCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred ccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 5788999999999998 89999999999999999876 5678888999999999999973 368999999999999999
Q ss_pred CCCCCCCC---Ccc-eeec-ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEec-cCCCCceeeeeEEEEcC
Q 009380 398 RSMATDKP---EPM-KVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHH-NNQTGRWISSFRAIWGW 471 (536)
Q Consensus 398 ~~~~~~~~---~~~-~~~~-~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~ 471 (536)
+....... ... .+.. |...|.+++|++++ +|++++.||.|+|||..+++....... .......+.. ++|+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~--v~~~~ 305 (330)
T 2hes_X 229 MGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINV--VKWLE 305 (330)
T ss_dssp EEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEE--EEEC-
T ss_pred cCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEE--EEEec
Confidence 76421110 111 1223 88999999999765 799999999999999876532111111 1111113333 67898
Q ss_pred --CCCEEEEEcCCCcEEEEcCCc
Q 009380 472 --DDSCVFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 472 --~g~~l~~gs~dg~I~v~d~~~ 492 (536)
++.+|++|+.||.|+||++..
T Consensus 306 ~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 306 LNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ----CCEEEEETTSEEEEEEC--
T ss_pred CCCceEEEEecCCCcEEEEEecc
Confidence 688999999999999999864
No 37
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.1e-38 Score=316.85 Aligned_cols=289 Identities=14% Similarity=0.146 Sum_probs=237.6
Q ss_pred ccccceeeeecCCCCcccccccccccccccccccceEEecccccCccc-cccc------------------cCCceEEEE
Q 009380 181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-IARI------------------MPGRITQMK 241 (536)
Q Consensus 181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-~~~~------------------~~~~I~~v~ 241 (536)
+|...|.++.|+|||++++.. .++.+.+|++...... .+.. +...|.+++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g-----------~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 130 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATG-----------CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 130 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEE-----------CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEE-----------cCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEE
Confidence 699999999999999999854 2456777876432211 1111 122499999
Q ss_pred EEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee
Q 009380 242 FLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY 321 (536)
Q Consensus 242 ~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~ 321 (536)
|+| ++++|++|+.||.|+|||+.+ ...+..+.+|...|.+++|+|++ .+|++++.|++|++||+.++.....+
T Consensus 131 ~s~--dg~~l~s~~~d~~i~iwd~~~----~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 131 FSP--DGKFLATGAEDRLIRIWDIEN----RKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp ECT--TSSEEEEEETTSCEEEEETTT----TEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ECC--CCCEEEEEcCCCeEEEEECCC----CcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEE
Confidence 999 999999999999999999987 67788899999999999999998 99999999999999999999888888
Q ss_pred cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE-------eccCCCeEEEEEecCCCCEEEEEeCCCcEEE
Q 009380 322 SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW-------LLHEARINTIDFNPRNPNIMATSSTDGTACI 394 (536)
Q Consensus 322 ~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-------~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~i 394 (536)
.+...+.+++|+|.++.+|++|+.||.|++||++++..+..+ .+|...|.+++|+|++ .+|++|+.||.|++
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKL 282 (393)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSEEEE
T ss_pred EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEE
Confidence 888899999999944489999999999999999998877666 5789999999999987 79999999999999
Q ss_pred EeCCCCCCC--------CCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeE
Q 009380 395 WDLRSMATD--------KPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFR 466 (536)
Q Consensus 395 wdl~~~~~~--------~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 466 (536)
||++..... ........+|...|.+++|+|++.+|++++.|+.|++||+.+++.+..+..+. ..+..
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~---~~v~~-- 357 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR---NSVIS-- 357 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS---SCEEE--
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC---CCEEE--
Confidence 999874321 11223455899999999999999999999999999999999988877764322 12333
Q ss_pred EEEc------CCCCEEEEEcCCCcEEEEcCCcc
Q 009380 467 AIWG------WDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 467 ~~~s------~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
++|+ |++.+|++|+.|+.|+||++...
T Consensus 358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 358 VAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 4454 47889999999999999997653
No 38
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-39 Score=333.41 Aligned_cols=342 Identities=11% Similarity=0.007 Sum_probs=242.2
Q ss_pred cccceeeeecCCCC---------ccccccccccc---------ccccccccceEEecccccCccc-----cccccCCceE
Q 009380 182 EFNGFKTCKDEGLG---------VGSCDLIKGVV---------KTEKIEVGSCVDIGSLTLKPEN-----IARIMPGRIT 238 (536)
Q Consensus 182 ~~~~v~~~~~s~~~---------~~l~~~~~~~~---------~~~~~~~dg~v~lw~~~~~~~~-----~~~~~~~~I~ 238 (536)
+...|.++.|+|++ .+++....... .+.+++.|+.|+||++...... .+..|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 46788899998887 66765432211 1356789999999998554321 2345688999
Q ss_pred EEEEEec----CCccEEEEEeCCCcEEEEECCCCCCC-------CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380 239 QMKFLPC----SDVRMVVAGSKLGNITFWNLDSQQDE-------DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLI 307 (536)
Q Consensus 239 ~v~~~p~----~~~~~l~tg~~dg~v~iwd~~~~~~~-------~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I 307 (536)
+|+|+|. .++.+||+|+.||+|+|||+...... ......+.+|...|++++|+++ ..|++|+.||+|
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV 289 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFV 289 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEE
Confidence 9999993 12679999999999999999864211 1234578899999999999985 589999999999
Q ss_pred EEEECCCCe-E-EEeecCCCceeEE--EecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCC--CeEEEEEecCCCC
Q 009380 308 RLMDAEKEV-F-DLVYSSEYAVFSL--SQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA--RINTIDFNPRNPN 381 (536)
Q Consensus 308 ~vwd~~~~~-~-~~~~~~~~~i~~l--~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~--~i~~i~~~p~~~~ 381 (536)
++||++++. . ..+..|...|.++ +|++++.++|++|+.||+|++||+++++++..+.+|.. .|.+++|+|++ .
T Consensus 290 ~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~-~ 368 (524)
T 2j04_B 290 AEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI-Y 368 (524)
T ss_dssp EEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTT-T
T ss_pred EEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCc-C
Confidence 999998763 2 3456789999999 46666447999999999999999999888888877764 58899999987 6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCce
Q 009380 382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRW 461 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 461 (536)
.|++++.|++|++||++++. ....+.+|...|++++|+|+|++|++|+.|++|++||+... ..............
T Consensus 369 ~l~s~~~d~tv~lwd~~~~~----~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~ 443 (524)
T 2j04_B 369 SYIYSDGASSLRAVPSRAAF----AVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKS 443 (524)
T ss_dssp EEEEECSSSEEEEEETTCTT----CCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCC
T ss_pred eEEEeCCCCcEEEEECcccc----cceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceee
Confidence 89999999999999999853 34556789999999999999999999999999999998643 22211100000011
Q ss_pred eeeeEEEEcCCCCEEEEEcCCCcEEEEcCC-ccccceeccCCceeeeeeeEeecCCC--CCEEEEEccCCeEEEEecC
Q 009380 462 ISSFRAIWGWDDSCVFIGNMTRTVEVISPA-QRRSVATLQSPYISAIPCRFHAHPHQ--VGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 462 ~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~-~~~~~~~l~~~~~~~~~~~~~~~p~~--~~~lasgs~Dg~v~iW~~d 536 (536)
.....++|+|++..+.. .. .+.+|+.. ++..+..+.+|...+ ..++|+|.. +.+||+|+.||.|+||+++
T Consensus 444 ~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g~~~~~l~gh~~~V--~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 444 LRLWKWDYSIKDDKYRI-DS--SYEVYPLTVNDVSKAKIDAHGINI--TCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp CEEEECBCCSSSCEEEE-CC--CCCCCC-------------CCCSC--CCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred eEEEEeccCCCCCeEEc-cC--CceecccccCCcceeeecCCCceE--EEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 12345789999985532 22 23444433 455777777765443 367999953 4599999999999999975
No 39
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.4e-38 Score=320.02 Aligned_cols=321 Identities=9% Similarity=0.084 Sum_probs=251.0
Q ss_pred cceeeeecCCCCcccccccccccccccccccceEEecccccCccc-cccccCCceEEEEEEecCCccEEEEEeCCCcEEE
Q 009380 184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITF 262 (536)
Q Consensus 184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~i 262 (536)
+.+..+.|+|+++.++. ++.||.+++|++...... ....| ..+....|+| ++.+|++|+.||.|++
T Consensus 57 ~~~~~~~~s~~g~~l~~----------~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~--~~~~l~~~~~dg~i~i 123 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYK----------ARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKL--QMRRFILGTTEGDIKV 123 (420)
T ss_dssp BCCTTCEEEEEETTEEE----------EEETTEEEEEECCSEETTTTSCSC-CEEEEEEECS--SSCEEEEEETTSCEEE
T ss_pred ccccceeeeecCCeEEE----------EEcCCcEEEEEecccceeeEEecC-CceEEEEEec--CCCEEEEEECCCCEEE
Confidence 44557899999999884 477899999998543322 22333 4445557788 9999999999999999
Q ss_pred EECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE-EeecCCCceeEEEecCCCCCEEE
Q 009380 263 WNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLY 341 (536)
Q Consensus 263 wd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~ 341 (536)
||+.+ ......+.+|...|.+++|+|++ .+|++++.|+.|++||+.++... .+..|...|.+++|+|++ .+|+
T Consensus 124 wd~~~----~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~ 197 (420)
T 3vl1_A 124 LDSNF----NLQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG-RNVL 197 (420)
T ss_dssp ECTTS----CEEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT-TEEE
T ss_pred EeCCC----cceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC-CEEE
Confidence 99986 66777778999999999999998 99999999999999999987654 445689999999999998 8999
Q ss_pred EEECCCeEEEEECCCCccceeEec---cCCCeEEEE---------------------EecCCCCEEEEEeCCCcEEEEeC
Q 009380 342 FGEGQGGLNIWDVRSRKSATEWLL---HEARINTID---------------------FNPRNPNIMATSSTDGTACIWDL 397 (536)
Q Consensus 342 ~g~~dg~i~i~d~~~~~~~~~~~~---h~~~i~~i~---------------------~~p~~~~~l~s~s~dg~i~iwdl 397 (536)
+++.||.|++||+++++.+..+.. |...|.+++ |+|++ .+|++|+.||.|++||+
T Consensus 198 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~ 276 (420)
T 3vl1_A 198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNV 276 (420)
T ss_dssp EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEET
T ss_pred EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEEC
Confidence 999999999999999998888874 444555555 46766 69999999999999999
Q ss_pred CCCCCCCCCcceee-cccCceeEEEEccCCC-eEEEEeCCCcEEEEeCCCCCc-ceEEeccCCCCceeeeeEEEEcCCCC
Q 009380 398 RSMATDKPEPMKVL-SHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFEN-TSMIHHNNQTGRWISSFRAIWGWDDS 474 (536)
Q Consensus 398 ~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~-~l~t~s~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~ 474 (536)
+++. ...... .|...|.+++|+|++. +|++++.||.|++||+++++. +..+.... ...+. ..+.+++.
T Consensus 277 ~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--~~~v~---~~~~~~~~ 347 (420)
T 3vl1_A 277 FSKE----QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE--GTPIN---NVYFAAGA 347 (420)
T ss_dssp TTCC----EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST--TSCEE---EEEEETTE
T ss_pred CCCc----eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC--CCCce---EEEeCCCC
Confidence 9853 333333 5889999999999998 999999999999999998754 55554221 22333 33456888
Q ss_pred EEEEEcCCCcEEEEcCCccccc---------eeccCCceeeeeeeEeecCCCCC---EEEEEccCCeEEEEecC
Q 009380 475 CVFIGNMTRTVEVISPAQRRSV---------ATLQSPYISAIPCRFHAHPHQVG---TLAGATGGGQVYVWTSD 536 (536)
Q Consensus 475 ~l~~gs~dg~I~v~d~~~~~~~---------~~l~~~~~~~~~~~~~~~p~~~~---~lasgs~Dg~v~iW~~d 536 (536)
+|++++.|+.|++|++...... ..+..+... + ..++|+|. +. .|++++.+|.+.+|+++
T Consensus 348 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-v-~~~~~s~~-~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 348 LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDA-V-SQFCYVSD-DESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCC-C-CEEEEECC-SSSSCEEEEEETTTEEEEEESC
T ss_pred EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcc-e-EEEEEccC-CCCcceEEEEcCCceEEEEecc
Confidence 9999999999999998774221 122222222 2 46788884 46 67777788999999975
No 40
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=314.90 Aligned_cols=315 Identities=18% Similarity=0.250 Sum_probs=252.3
Q ss_pred ccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEe-------------
Q 009380 213 VGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLF------------- 278 (536)
Q Consensus 213 ~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~------------- 278 (536)
.++.+++|++... ...+.+.|.+.|++++|+|. ++.+|++|+.||.|++|++.+.. ....+
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~ 95 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPV-EGRYMLSGGSDGVIVLYDLENSS----RQSYYTCKAVCSIGRDHP 95 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTT-TCCEEEEEETTSCEEEEECCCCS----SSSCEEECEEEEECTTCT
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecC-CCCEEEEEcCCCeEEEEECCCCc----ccceEecccccccccccc
Confidence 3456777887543 44566889999999999985 67899999999999999999743 22222
Q ss_pred ccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCC--CEEEEEECCCeEEEEECCC
Q 009380 279 RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNV--NTLYFGEGQGGLNIWDVRS 356 (536)
Q Consensus 279 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~--~~l~~g~~dg~i~i~d~~~ 356 (536)
.+|...|.+++|+|++..+|++++.||.|++||+.++.....+.+...+.++.|.+.+. .++++++.+|.|++||+++
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 35999999999999554899999999999999999999888888999999999998642 4999999999999999999
Q ss_pred CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC------------CCCCcceeecccCceeEEEEcc
Q 009380 357 RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT------------DKPEPMKVLSHKRAVHSAYFSP 424 (536)
Q Consensus 357 ~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~------------~~~~~~~~~~~~~~v~~l~~sp 424 (536)
++.+..+..|...|.+++|+|++..+|++++.||.|++||++.... ..........|...|.+++|+|
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 9999999999999999999999866899999999999999987541 0111112246889999999999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCcceEEeccC-CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCc
Q 009380 425 SGSSLATTSFDDTIGIWSGVNFENTSMIHHNN-QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY 503 (536)
Q Consensus 425 ~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~ 503 (536)
++++|++++.|+.|++||+.+++......... ........+.. ....+..+++++.++.|++||+.+++.+..+.+|.
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV-SCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEE-CCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEE-ecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 99999999999999999999887655442111 11100111111 12334567777789999999999999999998766
Q ss_pred eeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 504 ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 504 ~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
..+. .++|+| ++.+|++|+.||.|++|+++
T Consensus 335 ~~v~--~~~~s~-~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 335 KTVD--CCVFQS-NFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp SCEE--EEEEET-TTTEEEEEETTSCEEEEEEC
T ss_pred CeEE--EEEEcC-CCCEEEEECCCCeEEEEeCC
Confidence 5544 678888 56999999999999999974
No 41
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.3e-37 Score=303.74 Aligned_cols=291 Identities=16% Similarity=0.227 Sum_probs=239.6
Q ss_pred cccccCCceEEEEEEecCC-ccEEEEEeCCCcEEEEECCCCCC-CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 229 IARIMPGRITQMKFLPCSD-VRMVVAGSKLGNITFWNLDSQQD-EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 229 ~~~~~~~~I~~v~~~p~~~-~~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
.+++|.+.|++|+|+| + +++|++|+.||+|+|||+..... .......+.+|...|.+++|+|++ .+|++++.|+.
T Consensus 33 tL~GH~~~V~~v~~sp--~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~ 109 (340)
T 4aow_A 33 TLKGHNGWVTQIATTP--QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGT 109 (340)
T ss_dssp EECCCSSCEEEEEECT--TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred EECCccCCEEEEEEeC--CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-CEEEEEccccc
Confidence 3678999999999999 6 68999999999999999986432 123566789999999999999999 99999999999
Q ss_pred EEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCC-CEE
Q 009380 307 IRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNP-NIM 383 (536)
Q Consensus 307 I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~-~~l 383 (536)
|++|+.......... .+...+..+.+++++ ++|++++.|+.+++||+..... ...+.+|...+..++|++++. .++
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred ceEEeecccceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 999999987655444 456788889999988 7899999999999999886544 344557999999999998653 478
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceee
Q 009380 384 ATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWIS 463 (536)
Q Consensus 384 ~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 463 (536)
++++.|+.|++||+++++ ....+.+|...|++++|+|++++|++++.|+.|++||+++.+.+..+.+.. .+.
T Consensus 189 ~s~~~d~~i~i~d~~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~----~v~ 260 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCK----LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD----IIN 260 (340)
T ss_dssp EEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS----CEE
T ss_pred EEEcCCCEEEEEECCCCc----eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc----eEE
Confidence 899999999999999853 445556899999999999999999999999999999999988877775432 233
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccC--------CceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 464 SFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS--------PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 464 ~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~--------~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
.+.|+|++. +++++.|+.|++||+.++..+..+.. .|...+ ..++|+| ++.+|++|+.||.|+|||+
T Consensus 261 --~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~~s~-dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 261 --ALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC-TSLAWSA-DGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp --EEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCE-EEEEECT-TSSEEEEEETTSCEEEEEE
T ss_pred --eeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCE-EEEEECC-CCCEEEEEeCCCEEEEEeC
Confidence 367888875 45566799999999998877666543 123333 5688999 6799999999999999997
Q ss_pred C
Q 009380 536 D 536 (536)
Q Consensus 536 d 536 (536)
+
T Consensus 336 ~ 336 (340)
T 4aow_A 336 T 336 (340)
T ss_dssp E
T ss_pred C
Confidence 3
No 42
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.1e-37 Score=336.77 Aligned_cols=293 Identities=16% Similarity=0.206 Sum_probs=240.0
Q ss_pred cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC-CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380 229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE-DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLI 307 (536)
Q Consensus 229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I 307 (536)
.++.|.+.|++|+|+|. ++++|++|+.||+|+||++...... ......+.+|...|.+++|+|++ .+|++|+.||+|
T Consensus 377 ~l~~H~~~V~~v~~~~~-~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPID-NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTT-CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred hcccCCceeEEEEecCC-CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-CEEEEEeCCCcE
Confidence 46789999999999983 3579999999999999999864221 23456788999999999999998 999999999999
Q ss_pred EEEECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE---eccCCCeEEEEEecCCC-CE
Q 009380 308 RLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW---LLHEARINTIDFNPRNP-NI 382 (536)
Q Consensus 308 ~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---~~h~~~i~~i~~~p~~~-~~ 382 (536)
++||+.++... .+.+|...|.+++|+|++ ++|++|+.|++|++||+......... .+|...|.+++|+|++. .+
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence 99999988655 445789999999999998 79999999999999998654332221 36889999999999763 58
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCcee
Q 009380 383 MATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWI 462 (536)
Q Consensus 383 l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 462 (536)
|++|+.|++|++||+++.+ ....+.+|...|++++|+|++++|++++.|++|+|||+.+++.+..+.+. ..+
T Consensus 534 l~s~s~d~~v~vwd~~~~~----~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~----~~v 605 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCK----LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN----SVI 605 (694)
T ss_dssp EEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS----SCE
T ss_pred EEEEeCCCeEEEEECCCCc----EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC----CcE
Confidence 9999999999999998753 44455689999999999999999999999999999999988776655332 223
Q ss_pred eeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCcee-----------------eeeeeEeecCCCCCEEEEEc
Q 009380 463 SSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYIS-----------------AIPCRFHAHPHQVGTLAGAT 525 (536)
Q Consensus 463 ~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~-----------------~~~~~~~~~p~~~~~lasgs 525 (536)
. .++|+|++.+|++++ ++.|+|||+.++..+..+..+... ..+..++|+| ++.+|++|+
T Consensus 606 ~--~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp-dg~~l~sgs 681 (694)
T 3dm0_A 606 H--ALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA-DGSTLFSGY 681 (694)
T ss_dssp E--EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT-TSSEEEEEE
T ss_pred E--EEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC-CCCEEEEEc
Confidence 3 477999998887776 556999999999877766532111 1235788999 679999999
Q ss_pred cCCeEEEEecC
Q 009380 526 GGGQVYVWTSD 536 (536)
Q Consensus 526 ~Dg~v~iW~~d 536 (536)
.||.|+||++.
T Consensus 682 ~Dg~i~iW~i~ 692 (694)
T 3dm0_A 682 TDGVIRVWGIG 692 (694)
T ss_dssp TTSEEEEEEC-
T ss_pred CCCeEEEEecc
Confidence 99999999974
No 43
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.1e-37 Score=304.72 Aligned_cols=300 Identities=16% Similarity=0.174 Sum_probs=248.5
Q ss_pred ccccccceecccccceeeeecCCC-CcccccccccccccccccccceEEecccccCc------cccccccCCceEEEEEE
Q 009380 171 KDENLGFVIKDEFNGFKTCKDEGL-GVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP------ENIARIMPGRITQMKFL 243 (536)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~------~~~~~~~~~~I~~v~~~ 243 (536)
+.+.++.+|+||.+.|.++.|+|+ +++++ +++.||.|+||++.... ...+++|.+.|.+++|+
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~----------S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s 95 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMIL----------SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 95 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEE----------EEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEE----------EEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC
Confidence 345677889999999999999998 56777 55899999999985432 23457799999999999
Q ss_pred ecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE--ee
Q 009380 244 PCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL--VY 321 (536)
Q Consensus 244 p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~--~~ 321 (536)
| ++.+|++|+.||.|++|+... .........+...+..+.+++++ .+|++++.|+.+++||+....... ..
T Consensus 96 ~--dg~~l~s~~~d~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~~ 168 (340)
T 4aow_A 96 S--DGQFALSGSWDGTLRLWDLTT----GTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDE 168 (340)
T ss_dssp T--TSSEEEEEETTSEEEEEETTT----TEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred C--CCCEEEEEcccccceEEeecc----cceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEec
Confidence 9 999999999999999999987 66777778888999999999998 999999999999999998765433 34
Q ss_pred cCCCceeEEEecCCCC-CEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 009380 322 SSEYAVFSLSQQPNNV-NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSM 400 (536)
Q Consensus 322 ~~~~~i~~l~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~ 400 (536)
.|...+..++|++++. .++++++.|+.|++||+++++.+..+.+|...|++++|+|++ .+|++|+.||.|++||+++.
T Consensus 169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTT
T ss_pred cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccC
Confidence 5788999999988753 467889999999999999999999999999999999999987 79999999999999999985
Q ss_pred CCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC----CCCceeeeeEEEEcCCCCEE
Q 009380 401 ATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN----QTGRWISSFRAIWGWDDSCV 476 (536)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~~g~~l 476 (536)
.......+...|.++.|+|++. +++++.|+.|++||+++......+.... ..+....+..++|+|+|++|
T Consensus 248 -----~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 321 (340)
T 4aow_A 248 -----KHLYTLDGGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL 321 (340)
T ss_dssp -----EEEEEEECSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEE
T ss_pred -----ceeeeecCCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEE
Confidence 3445556778999999999875 5667779999999998876655543211 11112233457899999999
Q ss_pred EEEcCCCcEEEEcCCccc
Q 009380 477 FIGNMTRTVEVISPAQRR 494 (536)
Q Consensus 477 ~~gs~dg~I~v~d~~~~~ 494 (536)
++|+.||.|+|||+.+|.
T Consensus 322 ~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 322 FAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEETTSCEEEEEEEC--
T ss_pred EEEeCCCEEEEEeCCCcC
Confidence 999999999999999875
No 44
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4e-37 Score=301.02 Aligned_cols=291 Identities=14% Similarity=0.157 Sum_probs=244.3
Q ss_pred ccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEE
Q 009380 173 ENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMV 251 (536)
Q Consensus 173 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l 251 (536)
+.+...+.+|...|.++.|+|+++.++. ++.||.|++|++... .......|...|.+++|+| ++++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s----------~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l 80 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLAS----------SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS--DSNLL 80 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEE----------EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEE----------eeCCCeEEEEeCCCcccchhhccCCCceEEEEEcC--CCCEE
Confidence 4566788999999999999999998884 578899999997433 3344578999999999999 99999
Q ss_pred EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-ecCCCceeEE
Q 009380 252 VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-YSSEYAVFSL 330 (536)
Q Consensus 252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~~~~~~i~~l 330 (536)
++|+.||.|++||+.+ ...+..+.+|...|.++.|+|++ ++|++++.|+.|++||++++..... ..|...|.++
T Consensus 81 ~s~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 155 (312)
T 4ery_A 81 VSASDDKTLKIWDVSS----GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155 (312)
T ss_dssp EEEETTSEEEEEETTT----CCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred EEECCCCEEEEEECCC----CcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEE
Confidence 9999999999999987 67888999999999999999998 9999999999999999998766544 4678899999
Q ss_pred EecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcce
Q 009380 331 SQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMK 409 (536)
Q Consensus 331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~ 409 (536)
+|+|++ .+|++++.||.|++||+++++.+..+. .+...+.+++|+|++ .+|++++.||.|++||+++++ ....
T Consensus 156 ~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~----~~~~ 229 (312)
T 4ery_A 156 HFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGK----CLKT 229 (312)
T ss_dssp EECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTE----EEEE
T ss_pred EEcCCC-CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCc----EEEE
Confidence 999998 899999999999999999998877664 566789999999987 799999999999999999853 3334
Q ss_pred eecccCcee--EEEEc-cCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc--CCCc
Q 009380 410 VLSHKRAVH--SAYFS-PSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN--MTRT 484 (536)
Q Consensus 410 ~~~~~~~v~--~l~~s-p~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs--~dg~ 484 (536)
+.+|...+. ...++ +++.+|++++.||.|++||+.+.+.+..+.... .. +..++|+|++.+|++++ .|+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~---~~--v~~~~~~p~~~~l~s~~~~~d~~ 304 (312)
T 4ery_A 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT---DV--VISTACHPTENIIASAALENDKT 304 (312)
T ss_dssp ECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS---SC--EEEEEECSSSSEEEEEECTTTCC
T ss_pred EEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC---Cc--EEEEeecCcCCceEEEEccCCcc
Confidence 445654432 23344 578899999999999999999888777664222 12 33478999999999986 6899
Q ss_pred EEEEcCC
Q 009380 485 VEVISPA 491 (536)
Q Consensus 485 I~v~d~~ 491 (536)
|++|+..
T Consensus 305 i~~W~~d 311 (312)
T 4ery_A 305 IKLWKSD 311 (312)
T ss_dssp EEEEECC
T ss_pred EEEecCC
Confidence 9999864
No 45
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.4e-37 Score=311.14 Aligned_cols=291 Identities=13% Similarity=0.141 Sum_probs=238.2
Q ss_pred cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCC--ceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDN--GIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
+...|.+.|++++|+| ++++|++|+.||.|++|++.+ .. .+..+.+|...|.+++|+|++ .+|++++.||.
T Consensus 3 ~~~~~~~~i~~~~~s~--~~~~l~~~~~d~~v~i~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~ 75 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNK--DRTQIAICPNNHEVHIYEKSG----NKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRN 75 (372)
T ss_dssp EEESCSSCCCEEEECT--TSSEEEEECSSSEEEEEEEET----TEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSC
T ss_pred eecccCCCeEEEEECC--CCCEEEEEeCCCEEEEEeCCC----CcEEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCe
Confidence 3466899999999999 999999999999999999986 44 788889999999999999998 99999999999
Q ss_pred EEEEECCCCeEE---EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc---ceeE-eccCCCeEEEEEecCC
Q 009380 307 IRLMDAEKEVFD---LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS---ATEW-LLHEARINTIDFNPRN 379 (536)
Q Consensus 307 I~vwd~~~~~~~---~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~-~~h~~~i~~i~~~p~~ 379 (536)
|++||+.++... ....|...|.+++|+|++ ++|++++.||.|++||++.+.. ...+ ..|...|.+++|+|++
T Consensus 76 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 76 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp EEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred EEEEECCCCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence 999999888643 335688899999999998 8999999999999999998774 2333 4689999999999977
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCC--------------CCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380 380 PNIMATSSTDGTACIWDLRSMAT--------------DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 380 ~~~l~s~s~dg~i~iwdl~~~~~--------------~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~ 445 (536)
.+|++++.||.|++||++.... .......+..|...|.+++|+|++.+|++++.|+.|++||+.+
T Consensus 155 -~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 155 -VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp -SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred -CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 7999999999999999753210 0123333447899999999999999999999999999999998
Q ss_pred CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc--cc--cc-------------------------
Q 009380 446 FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ--RR--SV------------------------- 496 (536)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~--~~--~~------------------------- 496 (536)
++.+..+.... ..+ ..++|+|++.+|++| .|+.|++|++.+ +. .+
T Consensus 234 ~~~~~~~~~~~---~~v--~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (372)
T 1k8k_C 234 KMAVATLASET---LPL--LAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK 307 (372)
T ss_dssp TTEEEEEECSS---CCE--EEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCC
T ss_pred CceeEEEccCC---CCe--EEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccc
Confidence 88777775322 123 347899999988888 899999999987 31 00
Q ss_pred -----------eeccCCceeeeeeeEeecCCCC---CEEEEEccCCeEEEEec
Q 009380 497 -----------ATLQSPYISAIPCRFHAHPHQV---GTLAGATGGGQVYVWTS 535 (536)
Q Consensus 497 -----------~~l~~~~~~~~~~~~~~~p~~~---~~lasgs~Dg~v~iW~~ 535 (536)
..+...|...+ ..++|+|.++ .+|++|+.||.|+||++
T Consensus 308 ~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 308 KASSEGSAAAGAGLDSLHKNSV-SQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp CC---------CCCSSSSSSCE-EEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred ccccccCccccccccccccCCc-ceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence 23332344444 4567776676 89999999999999996
No 46
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-37 Score=341.92 Aligned_cols=201 Identities=13% Similarity=0.091 Sum_probs=172.7
Q ss_pred ecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCC
Q 009380 179 IKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLG 258 (536)
Q Consensus 179 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg 258 (536)
..||.+.|.++.|+|++++++ +++.||.|+||+...........|...|.+++|+| + .+|++++.|+
T Consensus 13 ~~gh~~~V~~lafspdg~~lA----------sgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp--g-~~L~S~s~D~ 79 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLA----------IATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK--G-IYLVVINAKD 79 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEE----------EEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET--T-TEEEEEETTC
T ss_pred ccCCCCCcEEEEECCCCCEEE----------EEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC--C-CEEEEEECcC
Confidence 358999999999999999998 45788999999975443333345788999999999 3 4999999999
Q ss_pred cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE------------eecCCCc
Q 009380 259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL------------VYSSEYA 326 (536)
Q Consensus 259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~------------~~~~~~~ 326 (536)
+|+|||+.+ ...+..+. |...|++++|+|++ ++|++|+.||.|++||+.++.... ..+|...
T Consensus 80 ~v~lWd~~~----~~~~~~~~-~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~ 153 (902)
T 2oaj_A 80 TVYVLSLYS----QKVLTTVF-VPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSP 153 (902)
T ss_dssp EEEEEETTT----CSEEEEEE-CSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCC
T ss_pred eEEEEECCC----CcEEEEEc-CCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCC
Confidence 999999987 56677775 67899999999999 999999999999999999887531 2357789
Q ss_pred eeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc------------------CCCeEEEEEecCCCCEEEEEeC
Q 009380 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH------------------EARINTIDFNPRNPNIMATSST 388 (536)
Q Consensus 327 i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h------------------~~~i~~i~~~p~~~~~l~s~s~ 388 (536)
|.+++|+|++...+++|+.||.| +||+++++.+..+..| ...|++++|+|++ .+|++|+.
T Consensus 154 V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~ 231 (902)
T 2oaj_A 154 IVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHE 231 (902)
T ss_dssp CCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEET
T ss_pred eEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEEC
Confidence 99999999765789999999999 9999999888777655 5779999999987 79999999
Q ss_pred CCcEEEEeCCCC
Q 009380 389 DGTACIWDLRSM 400 (536)
Q Consensus 389 dg~i~iwdl~~~ 400 (536)
||.|++||++++
T Consensus 232 Dg~i~lWd~~~g 243 (902)
T 2oaj_A 232 DNSLVFWDANSG 243 (902)
T ss_dssp TCCEEEEETTTC
T ss_pred CCeEEEEECCCC
Confidence 999999999764
No 47
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.4e-37 Score=333.45 Aligned_cols=296 Identities=16% Similarity=0.198 Sum_probs=246.6
Q ss_pred cccccceecccccceeeeecCCCC-cccccccccccccccccccceEEecccccCc------cccccccCCceEEEEEEe
Q 009380 172 DENLGFVIKDEFNGFKTCKDEGLG-VGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP------ENIARIMPGRITQMKFLP 244 (536)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~------~~~~~~~~~~I~~v~~~p 244 (536)
.+.++..+.+|.+.|.++.+++++ ++++ +++.|+.|+||++.... ...+.+|.+.|.+++|+|
T Consensus 371 ~l~~~~~l~~H~~~V~~v~~~~~~~~~l~----------s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~ 440 (694)
T 3dm0_A 371 GLVLKGTMRAHTDMVTAIATPIDNADIIV----------SASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS 440 (694)
T ss_dssp SSEEEEEEECCSSCEEEEECCTTCCSEEE----------EEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT
T ss_pred ccchhhhcccCCceeEEEEecCCCCCEEE----------EEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC
Confidence 345566789999999999999876 5566 56899999999985432 234578999999999999
Q ss_pred cCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee---
Q 009380 245 CSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY--- 321 (536)
Q Consensus 245 ~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~--- 321 (536)
++.+|++|+.||+|+|||+.+ ...+..+.+|...|.+++|+|++ .+|++|+.|++|++||+.......+.
T Consensus 441 --~g~~l~sgs~Dg~v~vwd~~~----~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 513 (694)
T 3dm0_A 441 --DGQFALSGSWDGELRLWDLAA----GVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEGG 513 (694)
T ss_dssp --TSSEEEEEETTSEEEEEETTT----TEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSST
T ss_pred --CCCEEEEEeCCCcEEEEECCC----CcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeeccCC
Confidence 999999999999999999987 67888999999999999999998 99999999999999998776544432
Q ss_pred -cCCCceeEEEecCCCC-CEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380 322 -SSEYAVFSLSQQPNNV-NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS 399 (536)
Q Consensus 322 -~~~~~i~~l~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~ 399 (536)
+|...|.+++|+|++. ..|++|+.||.|++||+++++....+.+|...|++++|+|++ .+|++|+.||.|++||+++
T Consensus 514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTT
T ss_pred CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCC
Confidence 5778899999999863 589999999999999999999999999999999999999987 7999999999999999998
Q ss_pred CCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC--------------CCceeeee
Q 009380 400 MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ--------------TGRWISSF 465 (536)
Q Consensus 400 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~--------------~~~~~~~~ 465 (536)
++ .+....+...|.+++|+|++.+|++++ ++.|+|||+.+...+..+..... ....+.+.
T Consensus 593 ~~-----~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (694)
T 3dm0_A 593 GK-----KLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCT 666 (694)
T ss_dssp TE-----EEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEE
T ss_pred Cc-----eEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEee
Confidence 53 333445667899999999998776655 66699999998877665532110 01112234
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380 466 RAIWGWDDSCVFIGNMTRTVEVISPA 491 (536)
Q Consensus 466 ~~~~s~~g~~l~~gs~dg~I~v~d~~ 491 (536)
.+.|+|+|++|++|+.||.|+||++.
T Consensus 667 ~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 667 SLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 57899999999999999999999975
No 48
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.2e-36 Score=314.43 Aligned_cols=319 Identities=16% Similarity=0.154 Sum_probs=259.3
Q ss_pred ceecccccce-eeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEE
Q 009380 177 FVIKDEFNGF-KTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAG 254 (536)
Q Consensus 177 ~~~~~~~~~v-~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg 254 (536)
..+.+|.+.| .++.+ ++..++ +++.||.|++|++... .......|.+.|++++|+| ++ +|++|
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~----------sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~--~~-~l~s~ 179 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVI----------TGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GG-ILVSG 179 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEE----------EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS--TT-EEEEE
T ss_pred EEEcCCCCCcEEEEEE--CCCEEE----------EEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcC--CC-EEEEE
Confidence 4678998886 55555 455666 5688999999997543 2344568999999999998 66 99999
Q ss_pred eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec--CCCCEEEEEECCCeEEEEECCCCe----------------
Q 009380 255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ--YCLSKIFTSCYDGLIRLMDAEKEV---------------- 316 (536)
Q Consensus 255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~~l~s~s~dg~I~vwd~~~~~---------------- 316 (536)
+.||+|++||+.+ +..+..+.+|...|.+++|++ ++ .+|++++.||.|++||+.++.
T Consensus 180 s~dg~i~vwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 180 STDRTVRVWDIKK----GCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp ETTSCEEEEETTT----TEEEEEECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred eCCCCEEEEECCC----CcEEEEECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 9999999999997 678889999999999999995 55 899999999999999998764
Q ss_pred --------EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC
Q 009380 317 --------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST 388 (536)
Q Consensus 317 --------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~ 388 (536)
.....+|...+.++. +++ +++++|+.||.|++||+++++.+..+.+|...|.+++|+|++ .++++|+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~ 330 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER-KRCISASM 330 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEE--EET-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT-TEEEEEET
T ss_pred ccCCCeEEEEEccCccceEEEEc--CCC-CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC-CEEEEEeC
Confidence 223446777787774 445 799999999999999999999999999999999999999987 69999999
Q ss_pred CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEE
Q 009380 389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAI 468 (536)
Q Consensus 389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (536)
||.|++||+++++ ....+.+|...|.++.|+ +.+|++++.||.|++||+.+........+... +.. ++
T Consensus 331 dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~----~~~--~~ 398 (464)
T 3v7d_B 331 DTTIRIWDLENGE----LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNL----SAI--TT 398 (464)
T ss_dssp TSCEEEEETTTTE----EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTC----CCE--EE
T ss_pred CCcEEEEECCCCc----EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCC----ccE--EE
Confidence 9999999999853 445556899999999997 57999999999999999998776655543321 222 56
Q ss_pred EcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 469 WGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 469 ~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
|++++.+|++|+ |+.|++||+.+++.+..+...+...+ ..++|++ ..++++++.||.+.+|-+
T Consensus 399 ~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v-~~v~~~~--~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 399 FYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQI-WSVNFKG--KTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEE-EEEEEET--TEEEEEEEETTEEEEEEE
T ss_pred EEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcE-EEEEecC--CEEEEEEEeCCeEEEEEe
Confidence 889999999998 89999999999998886444344444 4677763 366777788888777654
No 49
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-37 Score=314.24 Aligned_cols=320 Identities=14% Similarity=0.140 Sum_probs=244.6
Q ss_pred eeeecCCCCcccccccccccccccccccceEEecccccCccccc-cccCCceEEEEEEecCCccEEEEEeCCCcEEEEEC
Q 009380 187 KTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIA-RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNL 265 (536)
Q Consensus 187 ~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~-~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~ 265 (536)
....|++++..++.. .+|+........+ ..|.+.|++++|+|. ++.+|++|+.||.|+|||+
T Consensus 31 ~~~~f~~~~~~~~~~----------------~~w~~~g~~~~~~~~~h~~~V~~~~~s~~-~~~~l~s~s~dg~v~vwd~ 93 (437)
T 3gre_A 31 DYKEFGPIQEIVRSP----------------NMGNLRGKLIATLMENEPNSITSSAVSPG-ETPYLITGSDQGVIKIWNL 93 (437)
T ss_dssp GCGGGCCCCCCCCCC----------------CGGGCCCCEEEEECTTTTSCEEEEEEECS-SSCEEEEEETTSEEEEEEH
T ss_pred chhhcCCcccccccc----------------ccccccceEEeeeccCCCCceEEEEECCC-CCCEEEEecCCceEEEeEC
Confidence 344567777766643 1377655544445 778999999999994 5789999999999999998
Q ss_pred CC---CCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC---CCeEEEee-----------c--CCCc
Q 009380 266 DS---QQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE---KEVFDLVY-----------S--SEYA 326 (536)
Q Consensus 266 ~~---~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~---~~~~~~~~-----------~--~~~~ 326 (536)
.+ ... ......+ .|...|.+++|+|++ .+|++++.||.|++||++ ++...... . +...
T Consensus 94 ~~~~~~~~-~~~~~~~-~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 170 (437)
T 3gre_A 94 KEIIVGEV-YSSSLTY-DCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEY 170 (437)
T ss_dssp HHHHTTCC-CSCSEEE-ECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCC
T ss_pred cccccCcc-cceeeec-cCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccC
Confidence 75 210 1223333 599999999999988 999999999999999995 33322211 1 4556
Q ss_pred eeEEE--ecCCCCCEEEEEECCCeEEEEECCCCccceeEec--cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009380 327 VFSLS--QQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL--HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT 402 (536)
Q Consensus 327 i~~l~--~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~ 402 (536)
+.++. +++++ .+|++|+.||.|++||+++++.+..+.. |...|++++|+|++ .+|++|+.||.|++||++++.
T Consensus 171 ~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~- 247 (437)
T 3gre_A 171 AVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNV- 247 (437)
T ss_dssp EEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE-
T ss_pred ceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCcc-
Confidence 66666 45666 7999999999999999999999999987 89999999999986 799999999999999999842
Q ss_pred CCCCcceee-cccCceeEEEEcc----CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC---------C----------
Q 009380 403 DKPEPMKVL-SHKRAVHSAYFSP----SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ---------T---------- 458 (536)
Q Consensus 403 ~~~~~~~~~-~~~~~v~~l~~sp----~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~---------~---------- 458 (536)
....+. .|...|.+++|+| ++.+|++++.|+.|++||+.+++....+..... .
T Consensus 248 ---~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (437)
T 3gre_A 248 ---LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC 324 (437)
T ss_dssp ---EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred ---EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence 223332 7888999996665 577999999999999999998887776652210 0
Q ss_pred C--ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC----------------------------------
Q 009380 459 G--RWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP---------------------------------- 502 (536)
Q Consensus 459 ~--~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~---------------------------------- 502 (536)
+ ..-.+..++|+ ++.+|++|+.|+.|++||+.+++.+..+.++
T Consensus 325 ~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (437)
T 3gre_A 325 GIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDS 403 (437)
T ss_dssp CCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----------
T ss_pred ccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcc
Confidence 0 11112336788 7789999999999999999999888877763
Q ss_pred --ceeeeeeeEeecCC-CCCEEEEEccCCeEEEEe
Q 009380 503 --YISAIPCRFHAHPH-QVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 503 --~~~~~~~~~~~~p~-~~~~lasgs~Dg~v~iW~ 534 (536)
|...+ ..+.+++. +..+|++|+.||.|+||+
T Consensus 404 ~~h~~~I-~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 404 LYHHDII-NSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---CCCE-EEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccce-eeEeeeccCCceEEEEEcCCceEEEeC
Confidence 33333 34566664 357999999999999995
No 50
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.6e-37 Score=354.65 Aligned_cols=337 Identities=16% Similarity=0.196 Sum_probs=277.2
Q ss_pred ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCCccEEEE
Q 009380 175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMVVA 253 (536)
Q Consensus 175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l~t 253 (536)
....+.+|.+.|.++.|+|+|+.++. ++.||.|.+|++.... ......|.+.|++++|+| ++++|++
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s----------~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s 674 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIAS----------CGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS--DDSYIAT 674 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEE----------EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEEEE
T ss_pred ceEEEecccccEEEEEECCCCCEEEE----------EeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEec--CCCEEEE
Confidence 34567899999999999999999984 4788999999985433 344578999999999999 9999999
Q ss_pred EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC-CCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEEE
Q 009380 254 GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC-LSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLS 331 (536)
Q Consensus 254 g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~ 331 (536)
|+.||.|+|||+.+ +..+..+.+|...|.+++|+|++ ..++++++.||.|++||+.++.... +.+|...|.+++
T Consensus 675 ~~~d~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~ 750 (1249)
T 3sfz_A 675 CSADKKVKIWDSAT----GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR 750 (1249)
T ss_dssp EETTSEEEEEETTT----CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEE
T ss_pred EeCCCeEEEEECCC----CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEE
Confidence 99999999999998 78889999999999999999953 2689999999999999999887654 457889999999
Q ss_pred ecCCCCCEEEEEECCCeEEEEECCCCccceeE------------------------------------------------
Q 009380 332 QQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW------------------------------------------------ 363 (536)
Q Consensus 332 ~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~------------------------------------------------ 363 (536)
|+|++ .+|++++.||.|++||+++++....+
T Consensus 751 ~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~ 829 (1249)
T 3sfz_A 751 FSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 829 (1249)
T ss_dssp ECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred EecCC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence 99998 89999999999999999776433222
Q ss_pred -------eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC
Q 009380 364 -------LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD 436 (536)
Q Consensus 364 -------~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg 436 (536)
.+|...|.+++|+|++ .++++++.||.|++||+.++. ......+|...|.+++|+|+|.+|++++.|+
T Consensus 830 ~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~----~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg 904 (1249)
T 3sfz_A 830 GLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRL----KVADCRGHLSWVHGVMFSPDGSSFLTASDDQ 904 (1249)
T ss_dssp CEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCc----eeeecCCCccceEEEEECCCCCEEEEEeCCC
Confidence 1577889999999977 799999999999999999853 4555668999999999999999999999999
Q ss_pred cEEEEeCCCCCcceE------------------Ee---------ccCCCCc-----eeeeeEEEEcCCCCEEEEEcCCCc
Q 009380 437 TIGIWSGVNFENTSM------------------IH---------HNNQTGR-----WISSFRAIWGWDDSCVFIGNMTRT 484 (536)
Q Consensus 437 ~I~iwd~~~~~~~~~------------------~~---------~~~~~~~-----~~~~~~~~~s~~g~~l~~gs~dg~ 484 (536)
.|++||+.+...... .. .....+. ......++|+|++.++++|+.+|.
T Consensus 905 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~ 984 (1249)
T 3sfz_A 905 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGA 984 (1249)
T ss_dssp CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSC
T ss_pred eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCC
Confidence 999999653211000 00 0000000 001234789999999999999999
Q ss_pred EEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 485 VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 485 I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
|.+|++.+++.+..+.+|...+. .+.|+| ++.+|++++.||.|++|+++
T Consensus 985 i~i~d~~~~~~~~~~~~h~~~v~--~l~~s~-dg~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 985 IKIIELPNNRVFSSGVGHKKAVR--HIQFTA-DGKTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp CEEEETTTTSCEEECCCCSSCCC--CEEECS-SSSCEEEECSSSBEEEEETT
T ss_pred EEEEEcCCCceeeecccCCCceE--EEEECC-CCCEEEEEcCCCEEEEEECC
Confidence 99999999988888877655443 678888 56999999999999999974
No 51
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.6e-38 Score=314.76 Aligned_cols=250 Identities=15% Similarity=0.179 Sum_probs=198.4
Q ss_pred cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380 229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR 308 (536)
Q Consensus 229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~ 308 (536)
+.+.+.+.|++++|+| ++++|++|+.||.|+||++.+.. ...+..+.+|...|.+++|+|++ ++|++++.|+.|+
T Consensus 6 ~~~~~~~~v~~~~~s~--~g~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~ 80 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNS--QRTEFVTTTATNQVELYEQDGNG--WKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAY 80 (377)
T ss_dssp EEEECSSCCSCCEECS--SSSEEECCCSSSCBCEEEEETTE--EEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEE
T ss_pred eEecCCCcEEEEEECC--CCCEEEEecCCCEEEEEEccCCc--eEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEE
Confidence 4466788999999999 99999999999999999998621 15677888999999999999998 9999999999999
Q ss_pred EEECCCCe----EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc---cceeEec-cCCCeEEEEEecCCC
Q 009380 309 LMDAEKEV----FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK---SATEWLL-HEARINTIDFNPRNP 380 (536)
Q Consensus 309 vwd~~~~~----~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~---~~~~~~~-h~~~i~~i~~~p~~~ 380 (536)
+||+.++. ......|...|.+++|+|++ ++|++++.||.|++||+++++ ....+.. |...|.+++|+|++
T Consensus 81 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~- 158 (377)
T 3dwl_C 81 VYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN- 158 (377)
T ss_dssp EC------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS-
T ss_pred EEEcCCCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC-
Confidence 99999876 45566789999999999988 899999999999999999887 4677777 99999999999977
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCC-------------CCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 009380 381 NIMATSSTDGTACIWDLRSMATDK-------------PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE 447 (536)
Q Consensus 381 ~~l~s~s~dg~i~iwdl~~~~~~~-------------~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~ 447 (536)
.+|++++.|+.|++||++...... ..+.....|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus 159 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 159 VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 799999999999999986432110 1122222899999999999999999999999999999999887
Q ss_pred c----ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380 448 N----TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA 491 (536)
Q Consensus 448 ~----~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~ 491 (536)
. +..+... ...+ ..++|+|++++|++|+.++.+ +|+..
T Consensus 239 ~~~~~~~~~~~~---~~~v--~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 239 QPPRALITVKLS---QLPL--RSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SCEEECCCEECS---SSCE--EEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CcceeeEeecCC---CCce--EEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 7 4444322 1223 347899999999999876655 66654
No 52
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-36 Score=307.46 Aligned_cols=294 Identities=14% Similarity=0.169 Sum_probs=241.6
Q ss_pred ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC--CCCceEEeccCCCCEEEEEEecC---CC---CEEE
Q 009380 228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD--EDNGIYLFRTHLGPISGIVTQQY---CL---SKIF 299 (536)
Q Consensus 228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~--~~~~~~~~~~h~~~V~~l~~~~~---~~---~~l~ 299 (536)
..++.|.+.|++++|+| ++|++|+.||.|++|++..... ....+..+.+|...|.+++|+|+ .+ .+|+
T Consensus 10 ~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 44678999999999987 6999999999999999987320 01268888899999999999998 34 5899
Q ss_pred EEECCCeEEEEECCCCe------EEEeecC-----CCceeEEEec----CCCCCE-EEEEECCCeEEEEECCC------C
Q 009380 300 TSCYDGLIRLMDAEKEV------FDLVYSS-----EYAVFSLSQQ----PNNVNT-LYFGEGQGGLNIWDVRS------R 357 (536)
Q Consensus 300 s~s~dg~I~vwd~~~~~------~~~~~~~-----~~~i~~l~~~----~~~~~~-l~~g~~dg~i~i~d~~~------~ 357 (536)
+++.||.|++||+.++. ...+..| ...|.+++|+ |++ .+ |++++.||.|++||+++ +
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCcccccccc
Confidence 99999999999998876 5555566 4899999999 888 78 99999999999999998 7
Q ss_pred ccce-----eEe-------ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec---c---cCceeE
Q 009380 358 KSAT-----EWL-------LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS---H---KRAVHS 419 (536)
Q Consensus 358 ~~~~-----~~~-------~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~---~---~~~v~~ 419 (536)
+.+. .+. .|...|.+++|+|++ +|++++.||.|++||+++++ ....+.. | ...|.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR----PLYNFESQHSMINNSNSIRS 238 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE----EEEEEECCC---CCCCCEEE
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc----eeEEEeccccccccCCccce
Confidence 7776 774 488999999999976 99999999999999999753 4444556 8 999999
Q ss_pred EEEccCCCeEEEEeCC---CcEEEEeCCCCCcceEEeccCC----------CCceeeeeEEEEcCCCCEEEEEcCCCcEE
Q 009380 420 AYFSPSGSSLATTSFD---DTIGIWSGVNFENTSMIHHNNQ----------TGRWISSFRAIWGWDDSCVFIGNMTRTVE 486 (536)
Q Consensus 420 l~~sp~g~~l~t~s~d---g~I~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~s~~g~~l~~gs~dg~I~ 486 (536)
++|+|++.+|++++.| +.|++||+.+++.+..+..... ....+ ..+.|+|++.+|++++.|+.|+
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~i~ 316 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV--MSLSFNDSGETLCSAGWDGKLR 316 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCE--EEEEECSSSSEEEEEETTSEEE
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcE--EEEEECCCCCEEEEEeCCCeEE
Confidence 9999999999999999 9999999998887777643100 12223 3478999999999999999999
Q ss_pred EEcCCccccceecc------CC--------------ceeeeeeeEeecCCCC----------CEEEEEccCCeEEEEecC
Q 009380 487 VISPAQRRSVATLQ------SP--------------YISAIPCRFHAHPHQV----------GTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 487 v~d~~~~~~~~~l~------~~--------------~~~~~~~~~~~~p~~~----------~~lasgs~Dg~v~iW~~d 536 (536)
+||+.+++.+..+. .+ |...+ ..++|+| ++ .+|++++.||.|+||+++
T Consensus 317 iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v-~~~~~~~-~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 317 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV-FDVKFLK-KGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp EEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE-EEEEEEC-TTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred EEEcCCCceeEEEecccCcccchhhhhccccccccccCCce-eEEEecc-ccccccccccccceEEEecCCCcEEEEEcC
Confidence 99999999988888 54 13333 4688888 44 699999999999999974
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.3e-35 Score=305.32 Aligned_cols=321 Identities=14% Similarity=0.163 Sum_probs=264.4
Q ss_pred cceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEE
Q 009380 176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAG 254 (536)
Q Consensus 176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg 254 (536)
...+.+|.+.|..+ +.++++.++ +++.||.|++|++... .......|.+.|++++|++ .+|++|
T Consensus 111 ~~~l~~h~~~v~~~-~~~~g~~l~----------sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~ 175 (445)
T 2ovr_B 111 PKVLKGHDDHVITC-LQFCGNRIV----------SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISG 175 (445)
T ss_dssp CEEEECSTTSCEEE-EEEETTEEE----------EEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEE
T ss_pred eEEecccCCCcEEE-EEEcCCEEE----------EEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC----CEEEEE
Confidence 34678999876443 455677776 4578999999998543 3345678999999999975 699999
Q ss_pred eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEEEec
Q 009380 255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQ 333 (536)
Q Consensus 255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~ 333 (536)
+.||.|++||+.+ +..+..+.+|...|.++.|++ +.|++|+.||.|++||+.++.... +..|...|.+++|
T Consensus 176 ~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~- 247 (445)
T 2ovr_B 176 STDRTLKVWNAET----GECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY- 247 (445)
T ss_dssp ETTSCEEEEETTT----TEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-
T ss_pred eCCCeEEEEECCc----CcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-
Confidence 9999999999987 678889999999999999963 789999999999999999876554 4468899999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc
Q 009380 334 PNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSH 413 (536)
Q Consensus 334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~ 413 (536)
++ +++++|+.||.|++||+++++.+..+.+|...|.++.| ++ .++++++.||.|++||+++++ ....+.+|
T Consensus 248 -~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~ 318 (445)
T 2ovr_B 248 -DG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGN----CIHTLTGH 318 (445)
T ss_dssp -CS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCC----EEEEECCC
T ss_pred -CC-CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCC----EEEEEcCC
Confidence 44 78999999999999999999999999999999999999 34 689999999999999999864 44555688
Q ss_pred cCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 414 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 414 ~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
...+.++.++ +++|++++.||.|++||+.+++....+.........+.. +.| ++.+|++|+.||.|++||+.++
T Consensus 319 ~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~--~~~--~~~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 319 QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC--LQF--NKNFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp CSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEE--EEE--CSSEEEEEETTSEEEEEETTTC
T ss_pred cccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEE--EEE--CCCEEEEEeCCCeEEEEECCCC
Confidence 8999988874 679999999999999999998888777543333334443 455 4679999999999999999999
Q ss_pred ccceecc----CCceeeeeeeEeecCCCCCEEEEEccCCe----EEEEecC
Q 009380 494 RSVATLQ----SPYISAIPCRFHAHPHQVGTLAGATGGGQ----VYVWTSD 536 (536)
Q Consensus 494 ~~~~~l~----~~~~~~~~~~~~~~p~~~~~lasgs~Dg~----v~iW~~d 536 (536)
+.+..+. ..+...+ ..++|+| ++.+|++|+.||. |.|||++
T Consensus 393 ~~~~~~~~~~~~~~~~~v-~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 393 EFIRNLVTLESGGSGGVV-WRIRASN-TKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp CEEEEEEECTTGGGTCEE-EEEEECS-SEEEEEEECSSSSSCCEEEEEECC
T ss_pred ceeeeeeccccCCCCceE-EEEEecC-CEEEEEEcccCCCCccEEEEEECC
Confidence 8888772 2233333 5788998 5689999999997 9999975
No 54
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2e-36 Score=301.76 Aligned_cols=295 Identities=14% Similarity=0.157 Sum_probs=231.2
Q ss_pred cccccCCceEEEEEEec--CCccEEEEEeCCCcEEEEECCCCCCCCCceEEecc-----CCCCEEEEEEecCCC---CEE
Q 009380 229 IARIMPGRITQMKFLPC--SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT-----HLGPISGIVTQQYCL---SKI 298 (536)
Q Consensus 229 ~~~~~~~~I~~v~~~p~--~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~-----h~~~V~~l~~~~~~~---~~l 298 (536)
+...|.+.|++++|+|. .....+++++.++.|++|++.+ ...+..+.. |...|.+++|+|++. .+|
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS----QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECG----GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCC----CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 44689999999999982 1145666667778999999986 344444443 668899999999931 699
Q ss_pred EEEECCCeEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE---eccCCCeEEEE
Q 009380 299 FTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW---LLHEARINTID 374 (536)
Q Consensus 299 ~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---~~h~~~i~~i~ 374 (536)
++++.||.|++||+.++.....+ .|...|.+++|+|+++++|++|+.||.|++||+++++.+..+ ..|...|.+++
T Consensus 89 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 89 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp EEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred EEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 99999999999999988765544 589999999999944489999999999999999999988888 68999999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCCCCC------------------------CCcceeecccCceeEEEEccCCCeEE
Q 009380 375 FNPRNPNIMATSSTDGTACIWDLRSMATDK------------------------PEPMKVLSHKRAVHSAYFSPSGSSLA 430 (536)
Q Consensus 375 ~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~------------------------~~~~~~~~~~~~v~~l~~sp~g~~l~ 430 (536)
|+|++ .+|++++.||.|++||+++++... ........|...|.+++|+ +.+|+
T Consensus 169 ~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 245 (366)
T 3k26_A 169 YDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL 245 (366)
T ss_dssp ECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEE
T ss_pred ECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEE
Confidence 99977 799999999999999998742100 0011112389999999998 77999
Q ss_pred EEeCCCcEEEEeCCCCCc--------------ceEEeccCCCCceeeeeEEEEcCC--CCEEEEEcCCCcEEEEcCCccc
Q 009380 431 TTSFDDTIGIWSGVNFEN--------------TSMIHHNNQTGRWISSFRAIWGWD--DSCVFIGNMTRTVEVISPAQRR 494 (536)
Q Consensus 431 t~s~dg~I~iwd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~s~~--g~~l~~gs~dg~I~v~d~~~~~ 494 (536)
+++.|+.|++||+.+... ...+.. ....+. .+.|+|+ +.+|++|+.||.|++||+.+++
T Consensus 246 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~--~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 246 SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY---SQCDIW--YMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC---SSCCSS--CCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred EEecCCEEEEEeCCCccccccccccCCcchheeccccc---cCCcEE--EEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 999999999999987654 122211 111222 3568888 9999999999999999999886
Q ss_pred cce----eccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 495 SVA----TLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 495 ~~~----~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
... .+..+........++|+| ++.+|++++.||.|+|||++
T Consensus 321 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 321 PHKAKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGGCEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred CccccceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEEec
Confidence 544 566553222235789999 67999999999999999974
No 55
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.4e-36 Score=292.43 Aligned_cols=256 Identities=17% Similarity=0.200 Sum_probs=207.6
Q ss_pred cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC--CCCEEEEEECCCe
Q 009380 229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY--CLSKIFTSCYDGL 306 (536)
Q Consensus 229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~dg~ 306 (536)
+..+|.+.|++++|+| +|++|++|+.|++|+||++.... ...+..+.+|.++|.+++|+++ + .+|++|+.|++
T Consensus 4 ~~~~h~~~V~~~~~s~--~g~~las~s~D~~v~iw~~~~~~--~~~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~ 78 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDY--YGKRMATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGK 78 (297)
T ss_dssp ECCSCSSCEEEEEECT--TSSEEEEEETTSCEEEEEBCSSC--BCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTE
T ss_pred eccCCcCceEEEEECC--CCCEEEEEeCCCEEEEEecCCCC--cEEEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCE
Confidence 4578999999999999 99999999999999999997522 3567889999999999999864 5 89999999999
Q ss_pred EEEEECCCCe---EEEeecCCCceeEEEecCCC-CCEEEEEECCCeEEEEECCCCcc--ceeEeccCCCeEEEEEecCC-
Q 009380 307 IRLMDAEKEV---FDLVYSSEYAVFSLSQQPNN-VNTLYFGEGQGGLNIWDVRSRKS--ATEWLLHEARINTIDFNPRN- 379 (536)
Q Consensus 307 I~vwd~~~~~---~~~~~~~~~~i~~l~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~i~~~p~~- 379 (536)
|++||++++. ......|...|.+++|+|+. ..+|++++.||.|++||++++.. ...+.+|...|.+++|+|++
T Consensus 79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158 (297)
T ss_dssp EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcc
Confidence 9999998864 23345688999999999972 37999999999999999987642 45677899999999999963
Q ss_pred -----------CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCC---CeEEEEeCCCcEEEEeCCC
Q 009380 380 -----------PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSG---SSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 380 -----------~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g---~~l~t~s~dg~I~iwd~~~ 445 (536)
..+|++|+.|++|++||++.+.........+.+|...|.+++|+|++ .+|++++.|++|+|||+.+
T Consensus 159 ~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp -----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 36899999999999999987531111223455899999999999984 8999999999999999876
Q ss_pred CCcce--EEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380 446 FENTS--MIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA 491 (536)
Q Consensus 446 ~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~ 491 (536)
..... ........... ...++|+|++++|++++.|+.|+||+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~--v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDV--LWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp TTSCCEEEESSSSCCSSC--EEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCccceeeeecccCCCc--EEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 43211 11111111222 3458899999999999999999999975
No 56
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.4e-35 Score=290.46 Aligned_cols=281 Identities=13% Similarity=0.189 Sum_probs=242.1
Q ss_pred cccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc--ccc--c--ccCCceEEEEEEecCCccEEEE
Q 009380 180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE--NIA--R--IMPGRITQMKFLPCSDVRMVVA 253 (536)
Q Consensus 180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~--~~~--~--~~~~~I~~v~~~p~~~~~~l~t 253 (536)
.+|...|.++.|+++++.++.. + +|.|++|++..... .+. . .|...|.+++|+| ++++|++
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~----------~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~ 114 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTG----------G-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIV 114 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEE----------C-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEE
T ss_pred ccCCCceEEEEEecCCcEEEEc----------C-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC--CCCEEEE
Confidence 4799999999999999999854 4 78999999854321 111 1 6889999999999 9999999
Q ss_pred EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCceeEEEe
Q 009380 254 GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQ 332 (536)
Q Consensus 254 g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~ 332 (536)
|+.||.|++|++.+.. ......+..|...|.+++|+|++ .+|++++.||.|++||++++.....+ .|...|.+++|
T Consensus 115 ~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~ 191 (337)
T 1gxr_A 115 GGEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 191 (337)
T ss_dssp EESSSEEEEEECCCC----EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCC--cceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEE
Confidence 9999999999998732 23567788899999999999998 99999999999999999988765544 57889999999
Q ss_pred cCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec
Q 009380 333 QPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS 412 (536)
Q Consensus 333 ~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~ 412 (536)
+|++ ++|++++.||.|++||+++++.+..+. +...+.+++|+|++ .+|++++.|+.|++||+++. .......
T Consensus 192 ~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~-----~~~~~~~ 263 (337)
T 1gxr_A 192 SNDG-TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKP-----DKYQLHL 263 (337)
T ss_dssp CTTS-SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSS-----CEEEECC
T ss_pred CCCC-CEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCC-----CeEEEcC
Confidence 9998 899999999999999999998877765 78899999999987 79999999999999999885 3456668
Q ss_pred ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380 413 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 413 ~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
|...|.+++|+|++++|++++.||.|++||+.+++......+.. .+. .+.|+|++++|++++.||.|++|++
T Consensus 264 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~----~v~--~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS----SVL--SCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS----CEE--EEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCC----cEE--EEEECCCCCEEEEecCCCeEEEEEE
Confidence 99999999999999999999999999999999888775554422 233 3779999999999999999999986
No 57
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.4e-36 Score=320.26 Aligned_cols=331 Identities=13% Similarity=0.060 Sum_probs=259.0
Q ss_pred cceecccccceeeeecCCCCc-ccccccccccccccccccceEEecccccC-ccccccccCC---ceEEEEEEecCC-cc
Q 009380 176 GFVIKDEFNGFKTCKDEGLGV-GSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPG---RITQMKFLPCSD-VR 249 (536)
Q Consensus 176 ~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~---~I~~v~~~p~~~-~~ 249 (536)
...+.+|...|.++.|+|++. .++ +++.||.|++|++... .......|.+ .|++++|+| + +.
T Consensus 153 ~~~~~~~~~~v~~~~~~~~~~~~l~----------~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 220 (615)
T 1pgu_A 153 LGEVSGHSQRINACHLKQSRPMRSM----------TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP--DSGE 220 (615)
T ss_dssp EEECCSCSSCEEEEEECSSSSCEEE----------EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS--TTCC
T ss_pred ceeeecCCccEEEEEECCCCCcEEE----------EEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC--CCCC
Confidence 456678999999999999998 455 4578899999997443 2334567888 999999999 8 99
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEe-c---cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC-
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLF-R---THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE- 324 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~-~---~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~- 324 (536)
+|++|+.||.|++||+.+ ...+..+ . .|...|.+++|+ ++ .+|++++.|+.|++||+.++.....+...
T Consensus 221 ~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 294 (615)
T 1pgu_A 221 FVITVGSDRKISCFDGKS----GEFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDK 294 (615)
T ss_dssp EEEEEETTCCEEEEETTT----CCEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred EEEEEeCCCeEEEEECCC----CCEeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence 999999999999999987 6777777 6 899999999999 77 99999999999999999988776655433
Q ss_pred ----CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecC----------------------
Q 009380 325 ----YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPR---------------------- 378 (536)
Q Consensus 325 ----~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~---------------------- 378 (536)
..+.++.|. ++ .++++++.+|.|++||+.+++.+..+.+|...|.+++| |+
T Consensus 295 ~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~ 371 (615)
T 1pgu_A 295 QQLGNQQVGVVAT-GN-GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDH 371 (615)
T ss_dssp TCGGGCEEEEEEE-ET-TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCC
T ss_pred CcccCceeEEEeC-CC-CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcc
Confidence 678888886 54 79999999999999999988877777777666666665 42
Q ss_pred -----------CCCEEEEEeCCCcEEEEeCCCCCC---------------------------------------------
Q 009380 379 -----------NPNIMATSSTDGTACIWDLRSMAT--------------------------------------------- 402 (536)
Q Consensus 379 -----------~~~~l~s~s~dg~i~iwdl~~~~~--------------------------------------------- 402 (536)
+ ..|++++.|+.|++||+.....
T Consensus 372 ~~~v~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (615)
T 1pgu_A 372 SNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 450 (615)
T ss_dssp CSCEEEEECCST-TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred cCceEEEEECCC-cEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence 2 3444444444444444432100
Q ss_pred ---------------CC---------CCc--ceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC
Q 009380 403 ---------------DK---------PEP--MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN 456 (536)
Q Consensus 403 ---------------~~---------~~~--~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~ 456 (536)
.. ... .....|...|.+++|+|++++|++++.|+.|++||+.+++.+..+...
T Consensus 451 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~- 529 (615)
T 1pgu_A 451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF- 529 (615)
T ss_dssp EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC-
T ss_pred EEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC-
Confidence 00 001 233468899999999999999999999999999999988776654310
Q ss_pred CCCceeeeeEEEEcC----------CCCEEEEEcCCCcEEEEcCCcc-ccceeccCCceeeeeeeEeecCCCCCEEEEEc
Q 009380 457 QTGRWISSFRAIWGW----------DDSCVFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGAT 525 (536)
Q Consensus 457 ~~~~~~~~~~~~~s~----------~g~~l~~gs~dg~I~v~d~~~~-~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs 525 (536)
....+. .++|+| ++.+|++|+.|+.|++||+.++ +.+..+.+|...+. .+.|+| ++. |++++
T Consensus 530 -h~~~v~--~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~--~l~~s~-~~~-l~s~~ 602 (615)
T 1pgu_A 530 -RTSKIN--AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN--NLLWET-PST-LVSSG 602 (615)
T ss_dssp -CSSCEE--EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEE--EEEEEE-TTE-EEEEE
T ss_pred -CCCcee--EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceE--EEEEcC-CCC-eEEec
Confidence 222333 478999 9999999999999999999998 67888887655544 678888 456 99999
Q ss_pred cCCeEEEEecC
Q 009380 526 GGGQVYVWTSD 536 (536)
Q Consensus 526 ~Dg~v~iW~~d 536 (536)
.||.|++|+++
T Consensus 603 ~d~~v~iw~~~ 613 (615)
T 1pgu_A 603 ADACIKRWNVV 613 (615)
T ss_dssp TTSCEEEEEEC
T ss_pred CCceEEEEeee
Confidence 99999999985
No 58
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.4e-36 Score=329.84 Aligned_cols=334 Identities=15% Similarity=0.187 Sum_probs=270.1
Q ss_pred ccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEE
Q 009380 173 ENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMV 251 (536)
Q Consensus 173 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l 251 (536)
+.....+.+|.+.|.++.|+|++..++.. ..+|.|.||++... .......|.+.|.+++|+| ++.+|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~----------~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l 70 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTT----------LYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIA--RKNWI 70 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEE----------ETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG--GGTEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEE----------eCCCEEEEEECCCCceEEEEecCCCcEEEEEEeC--CCCEE
Confidence 34567789999999999999999999854 67899999997543 3344567999999999999 99999
Q ss_pred EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC-eE-EEeecCCCceeE
Q 009380 252 VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE-VF-DLVYSSEYAVFS 329 (536)
Q Consensus 252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~-~~-~~~~~~~~~i~~ 329 (536)
++|+.||.|++|++.+ +..+..+.+|...|.+++|+|++ .+|++++.||.|++||+.++ .. .....|...|.+
T Consensus 71 ~~~~~dg~i~vw~~~~----~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~ 145 (814)
T 3mkq_A 71 IVGSDDFRIRVFNYNT----GEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145 (814)
T ss_dssp EEEETTSEEEEEETTT----CCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEE
T ss_pred EEEeCCCeEEEEECCC----CcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEE
Confidence 9999999999999987 67888999999999999999999 99999999999999999876 43 344568899999
Q ss_pred EEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC-CCeEEEEEec--CCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 009380 330 LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE-ARINTIDFNP--RNPNIMATSSTDGTACIWDLRSMATDKPE 406 (536)
Q Consensus 330 l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-~~i~~i~~~p--~~~~~l~s~s~dg~i~iwdl~~~~~~~~~ 406 (536)
++|+|.+++.|++++.||.|++||+.++.....+..+. ..+.+++|+| ++ .+|++++.||.|++||+++++ .
T Consensus 146 ~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~----~ 220 (814)
T 3mkq_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKS----C 220 (814)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTE----E
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCc----E
Confidence 99999433899999999999999999988887777554 8999999999 66 699999999999999998753 4
Q ss_pred cceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCE-EEEEcCCCcE
Q 009380 407 PMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC-VFIGNMTRTV 485 (536)
Q Consensus 407 ~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-l~~gs~dg~I 485 (536)
...+..|...|.+++|+|++.+|++++.||.|++||+.+++....+.... ..+ ..++|+|++.. +++.+.++.+
T Consensus 221 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~---~~v--~~~~~~~~~~~~~~~~~~~~~~ 295 (814)
T 3mkq_A 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL---ERS--WCIATHPTGRKNYIASGFDNGF 295 (814)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS---SSE--EEEEECTTCGGGEEEEEETTEE
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC---CcE--EEEEEccCCCceEEEEEeCCCE
Confidence 45556799999999999999999999999999999999888777664332 123 34779999873 2444446678
Q ss_pred EEEcCCccccceeccCC-----------------------------------------ceeeeeeeEeecCCCCCEEEEE
Q 009380 486 EVISPAQRRSVATLQSP-----------------------------------------YISAIPCRFHAHPHQVGTLAGA 524 (536)
Q Consensus 486 ~v~d~~~~~~~~~l~~~-----------------------------------------~~~~~~~~~~~~p~~~~~lasg 524 (536)
.+|++........+... ........++|+| ++.+|+++
T Consensus 296 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~ 374 (814)
T 3mkq_A 296 TVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVV 374 (814)
T ss_dssp EEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEE
T ss_pred EEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEe
Confidence 88887654332222100 0001124678888 56888888
Q ss_pred ccCCeEEEEec
Q 009380 525 TGGGQVYVWTS 535 (536)
Q Consensus 525 s~Dg~v~iW~~ 535 (536)
+ ||.+.||++
T Consensus 375 ~-~~~~~i~~~ 384 (814)
T 3mkq_A 375 G-DGEYVIYTA 384 (814)
T ss_dssp E-TTEEEEEET
T ss_pred c-CCEEEEEEC
Confidence 7 899999985
No 59
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.7e-36 Score=306.34 Aligned_cols=292 Identities=11% Similarity=0.119 Sum_probs=244.2
Q ss_pred cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-------cccccccCCceEEEEEEecC
Q 009380 174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-------ENIARIMPGRITQMKFLPCS 246 (536)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-------~~~~~~~~~~I~~v~~~p~~ 246 (536)
.....+.+|.+.|.++.|+| ..++ +++.||.|++|++.... ......|...|++++|+|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~----------s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-- 72 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTV----------SCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ-- 72 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEE----------EEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE--
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEE----------EEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEec--
Confidence 34567889999999999998 5555 45789999999986554 445567899999999999
Q ss_pred C----c---cEEEEEeCCCcEEEEECCCCCCCCCc-----eEEeccC-----CCCEEEEEEe----cCCCCE-EEEEECC
Q 009380 247 D----V---RMVVAGSKLGNITFWNLDSQQDEDNG-----IYLFRTH-----LGPISGIVTQ----QYCLSK-IFTSCYD 304 (536)
Q Consensus 247 ~----~---~~l~tg~~dg~v~iwd~~~~~~~~~~-----~~~~~~h-----~~~V~~l~~~----~~~~~~-l~s~s~d 304 (536)
+ + .+|++|+.||.|++|++.+ ... +..+..| ...|.+++|+ |++ .+ |++++.|
T Consensus 73 ~~~~~g~~~~~l~s~~~dg~i~iw~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~d 147 (397)
T 1sq9_A 73 AIERDAFELCLVATTSFSGDLLFYRITR----EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVK 147 (397)
T ss_dssp EEETTTEEEEEEEEEETTSCEEEEEEEE----CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETT
T ss_pred ccccCCccccEEEEEcCCCCEEEEEccC----CcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCC
Confidence 8 8 9999999999999999987 444 7888888 5999999999 998 88 9999999
Q ss_pred CeEEEEECCC------CeEE------Ee-------ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec
Q 009380 305 GLIRLMDAEK------EVFD------LV-------YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL 365 (536)
Q Consensus 305 g~I~vwd~~~------~~~~------~~-------~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 365 (536)
|.|++||+.+ +... .+ ..|...|.+++|+|++ +|++++.||.|++||+++++.+..+..
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFES 225 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEec
Confidence 9999999987 4332 33 3368899999999987 999999999999999999999999998
Q ss_pred ---c---CCCeEEEEEecCCCCEEEEEeCC---CcEEEEeCCCCCCCCCCcceeec-------------ccCceeEEEEc
Q 009380 366 ---H---EARINTIDFNPRNPNIMATSSTD---GTACIWDLRSMATDKPEPMKVLS-------------HKRAVHSAYFS 423 (536)
Q Consensus 366 ---h---~~~i~~i~~~p~~~~~l~s~s~d---g~i~iwdl~~~~~~~~~~~~~~~-------------~~~~v~~l~~s 423 (536)
| ...|.+++|+|++ .+|++++.| |.|++||+++++ ....+.. |...|.+++|+
T Consensus 226 ~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 300 (397)
T 1sq9_A 226 QHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGE----RIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 300 (397)
T ss_dssp CC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCC----EEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred cccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCc----ccceeccCcccccccccccccCCcEEEEEEC
Confidence 9 9999999999987 799999999 999999999853 3444445 99999999999
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC---CC---------------CceeeeeEEEEcCCC----------CE
Q 009380 424 PSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN---QT---------------GRWISSFRAIWGWDD----------SC 475 (536)
Q Consensus 424 p~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~---~~---------------~~~~~~~~~~~s~~g----------~~ 475 (536)
|++.+|++++.|+.|++||+.+++.+..+.... .. ...+ ..++|+|++ .+
T Consensus 301 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v--~~~~~~~~g~~~~~~~~~~~~ 378 (397)
T 1sq9_A 301 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV--FDVKFLKKGWRSGMGADLNES 378 (397)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE--EEEEEECTTTSBSTTCTTSCE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCce--eEEEeccccccccccccccce
Confidence 999999999999999999999988887776110 11 2233 347899998 79
Q ss_pred EEEEcCCCcEEEEcCCcc
Q 009380 476 VFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 476 l~~gs~dg~I~v~d~~~~ 493 (536)
|++|+.||.|++|++.++
T Consensus 379 l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 379 LCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEEEETTTEEEEEEEEC-
T ss_pred EEEecCCCcEEEEEcCCC
Confidence 999999999999999876
No 60
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=301.40 Aligned_cols=290 Identities=13% Similarity=0.125 Sum_probs=230.7
Q ss_pred cccccCCceEEEEEEecCCcc-EEEEEeC---CCcEEEEECCCCCCCCCce-EEeccCCCCEEEEEEecCC--CCEEEEE
Q 009380 229 IARIMPGRITQMKFLPCSDVR-MVVAGSK---LGNITFWNLDSQQDEDNGI-YLFRTHLGPISGIVTQQYC--LSKIFTS 301 (536)
Q Consensus 229 ~~~~~~~~I~~v~~~p~~~~~-~l~tg~~---dg~v~iwd~~~~~~~~~~~-~~~~~h~~~V~~l~~~~~~--~~~l~s~ 301 (536)
+.+.|.+.|++++|+| ++. ++++|+. ||.|+||++.+ .... ....+|...|.+++|+|++ +.+|+++
T Consensus 13 ~~~~h~~~v~~~~~~p--~~~~l~~~~s~~~~d~~v~iw~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVP--CSAKFVTMGNFARGTGVIQLYEIQH----GDLKLLREIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp EEEECSSCEEEEEECT--TSSEEEEEEC--CCCEEEEEEEECS----SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred hccCCCCceEEEEEcC--CCceEEEecCccCCCcEEEEEeCCC----CcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence 3467999999999999 775 5566766 89999999987 3333 2334799999999999983 3899999
Q ss_pred ECCCeEEEEECCCCe--EEEeecCCCceeEEEe------cCCCCCEEEEEECCCeEEEEECCCCc-cceeEeccCC----
Q 009380 302 CYDGLIRLMDAEKEV--FDLVYSSEYAVFSLSQ------QPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWLLHEA---- 368 (536)
Q Consensus 302 s~dg~I~vwd~~~~~--~~~~~~~~~~i~~l~~------~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~---- 368 (536)
+.||.|++||+.++. ...+..|...|.+++| +|++ ++|++++.||.|++||+++++ .+..+..|..
T Consensus 87 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp ETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred cCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence 999999999999875 4455578899999955 6676 799999999999999999987 6777776554
Q ss_pred CeEEEE----EecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc---CCCeEEEEeCCCcEEEE
Q 009380 369 RINTID----FNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP---SGSSLATTSFDDTIGIW 441 (536)
Q Consensus 369 ~i~~i~----~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp---~g~~l~t~s~dg~I~iw 441 (536)
.|.+++ |+|++ .+|++++.||.|++||++++ .......|...|.+++|+| ++.+|++++.||.|++|
T Consensus 166 ~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~ 239 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNM-----ALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVF 239 (357)
T ss_dssp CEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTT-----EEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred ceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccC-----ceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence 899998 67766 79999999999999999985 3455568899999999999 99999999999999999
Q ss_pred eCCCCCcceEEecc--CCCCceeeeeEEEEcCCCC-EEEEEcCCCcEEEEcCCccc-------------------cceec
Q 009380 442 SGVNFENTSMIHHN--NQTGRWISSFRAIWGWDDS-CVFIGNMTRTVEVISPAQRR-------------------SVATL 499 (536)
Q Consensus 442 d~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~g~-~l~~gs~dg~I~v~d~~~~~-------------------~~~~l 499 (536)
|+++.+....+... ......+ ..+.|+|++. +|++|+.||.|++||+..+. .+..+
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (357)
T 3i2n_A 240 DMRTQHPTKGFASVSEKAHKSTV--WQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV 317 (357)
T ss_dssp EEEEEETTTEEEEEEEECCSSCE--EEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred eCcCCCcccceeeeccCCCcCCE--EEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence 99887766555311 1122233 3477999998 89999999999999997543 34555
Q ss_pred cCCceeeeeeeEeecCCCCCEEE-EEccCCeEEEEecC
Q 009380 500 QSPYISAIPCRFHAHPHQVGTLA-GATGGGQVYVWTSD 536 (536)
Q Consensus 500 ~~~~~~~~~~~~~~~p~~~~~la-sgs~Dg~v~iW~~d 536 (536)
.+|...+ ..++|+| ++.+|+ +++.||.|+||++.
T Consensus 318 ~~~~~~v--~~~~~s~-~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 318 TLSTQPI--SSLDWSP-DKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp ECCSSCE--EEEEECS-SSTTEEEEEETTSEEEEEEEC
T ss_pred ccCCCCe--eEEEEcC-CCCeEEEEecCCCcEEEEECC
Confidence 5554333 4688999 457777 89999999999974
No 61
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.8e-36 Score=321.44 Aligned_cols=328 Identities=14% Similarity=0.135 Sum_probs=267.2
Q ss_pred cccccceeeeecCCCCcccccccccccccccccccceEEecccccC-----ccccccccCCc-eEEEEEEecCCccEEEE
Q 009380 180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-----PENIARIMPGR-ITQMKFLPCSDVRMVVA 253 (536)
Q Consensus 180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-----~~~~~~~~~~~-I~~v~~~p~~~~~~l~t 253 (536)
..|...|.++.|+|+++.++.. . ++.|.+|++... ....+..|.+. |++++|+|..++++|++
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~----------~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s 83 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYP----------C-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS 83 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEE----------E-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEE
T ss_pred CCccCceeEEEECCCCCEEEEe----------c-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEE
Confidence 3578899999999999999865 2 678999998643 44556789999 99999999545789999
Q ss_pred EeCCCcEEEEECCCCCC----CCCceEEeccCCCCEEEEEEecCCCCEEEEEECC----CeEEEEECCCCeEEEeecCCC
Q 009380 254 GSKLGNITFWNLDSQQD----EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD----GLIRLMDAEKEVFDLVYSSEY 325 (536)
Q Consensus 254 g~~dg~v~iwd~~~~~~----~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d----g~I~vwd~~~~~~~~~~~~~~ 325 (536)
|+.||.|++|++.++.. .......+..|...|.+++|+|++ .+|++++.+ +.|++||. ......+..|..
T Consensus 84 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~v~~~d~-~~~~~~~~~~~~ 161 (615)
T 1pgu_A 84 GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDS-GNSLGEVSGHSQ 161 (615)
T ss_dssp EETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTT-CCEEEECCSCSS
T ss_pred ecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC-CEEEEeccCCCCccEEEEEEC-CCcceeeecCCc
Confidence 99999999999964200 036677888999999999999999 999999988 78999993 334455667889
Q ss_pred ceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCC---CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009380 326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA---RINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT 402 (536)
Q Consensus 326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~---~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~ 402 (536)
.|.+++|+|++..++++++.||.|++||+.+++.+..+..|.. .|.+++|+|+++.+|++++.||.|++||+++++
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~- 240 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE- 240 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC-
T ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-
Confidence 9999999999855899999999999999999999999999999 999999999823799999999999999998853
Q ss_pred CCCCccee-e---cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC-CCCceeeeeEEEEcCCCCEEE
Q 009380 403 DKPEPMKV-L---SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN-QTGRWISSFRAIWGWDDSCVF 477 (536)
Q Consensus 403 ~~~~~~~~-~---~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~l~ 477 (536)
....+ . .|...|.+++|+ ++.+|++++.|+.|++||+.+++....+.... .....+ ..+.|+ ++.+++
T Consensus 241 ---~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~l~ 313 (615)
T 1pgu_A 241 ---FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ--VGVVAT-GNGRII 313 (615)
T ss_dssp ---EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE--EEEEEE-ETTEEE
T ss_pred ---EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCce--eEEEeC-CCCeEE
Confidence 33333 3 899999999999 99999999999999999999888877775431 111222 235564 889999
Q ss_pred EEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 478 IGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 478 ~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
+++.|+.|++||+.+++.+..+.+|...+. .+.| |. |++++.||.|++|++
T Consensus 314 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~--~~~~-~~----l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 314 SLSLDGTLNFYELGHDEVLKTISGHNKGIT--ALTV-NP----LISGSYDGRIMEWSS 364 (615)
T ss_dssp EEETTSCEEEEETTEEEEEEEECCCSSCEE--EEET-TT----TEEEETTSCEEETTT
T ss_pred EEECCCCEEEEECCCCcEEEEEeCCCCCEE--EEEe-cC----cEEECCCCeEEEEEc
Confidence 999999999999999988888877654433 4555 52 666666666666664
No 62
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-36 Score=352.51 Aligned_cols=328 Identities=14% Similarity=0.174 Sum_probs=280.6
Q ss_pred ceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-------------------------------
Q 009380 177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK------------------------------- 225 (536)
Q Consensus 177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~------------------------------- 225 (536)
..+.+|...|.++.|+|++..++. ++.||.+++|++...
T Consensus 876 ~~~~~h~~~v~~v~~spdg~~l~s----------~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1249)
T 3sfz_A 876 ADCRGHLSWVHGVMFSPDGSSFLT----------ASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG 945 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEE----------EETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSS
T ss_pred eecCCCccceEEEEECCCCCEEEE----------EeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcc
Confidence 456789999999999999998884 477889999986321
Q ss_pred -------ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEE
Q 009380 226 -------PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKI 298 (536)
Q Consensus 226 -------~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 298 (536)
.......+...|.+++|+| ++.++++|+.+|.|.+|++.+ ......+.+|...|.+++|+|++ .+|
T Consensus 946 ~~~~~~~~~~~~~~~~~~i~~~~~sp--~g~~l~~g~~~g~i~i~d~~~----~~~~~~~~~h~~~v~~l~~s~dg-~~l 1018 (1249)
T 3sfz_A 946 LQLIAGKTGQIDYLPEAQVSCCCLSP--HLEYVAFGDEDGAIKIIELPN----NRVFSSGVGHKKAVRHIQFTADG-KTL 1018 (1249)
T ss_dssp EEEEEESSCCEEEECCSCEEEEEECT--TSSEEEEEETTSCCEEEETTT----TSCEEECCCCSSCCCCEEECSSS-SCE
T ss_pred eEEEecCcceEEEcccCcEEEEEEcC--CCCEEEEEcCCCCEEEEEcCC----CceeeecccCCCceEEEEECCCC-CEE
Confidence 1111223456899999999 999999999999999999987 67788899999999999999999 999
Q ss_pred EEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecC
Q 009380 299 FTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPR 378 (536)
Q Consensus 299 ~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~ 378 (536)
++++.||.|++||+.++.......|...|.+++|++++ .+++++.||.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 1019 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 1096 (1249)
T 3sfz_A 1019 ISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS--RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD 1096 (1249)
T ss_dssp EEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS--EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSS
T ss_pred EEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC--cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCC
Confidence 99999999999999999988888999999999999975 7899999999999999999999999999999999999998
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEec----
Q 009380 379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHH---- 454 (536)
Q Consensus 379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~---- 454 (536)
+ .+|++++.||+|++||+.++. ....+.+|...|++++|+|+|++|++++.||.|++||+.+++....+..
T Consensus 1097 ~-~~l~s~s~d~~v~iwd~~~~~----~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1171 (1249)
T 3sfz_A 1097 A-TKFSSTSADKTAKIWSFDLLS----PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE 1171 (1249)
T ss_dssp S-SSCEEECCSSCCCEECSSSSS----CSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC--
T ss_pred C-CEEEEEcCCCcEEEEECCCcc----eeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccc
Confidence 8 689999999999999998864 4455668999999999999999999999999999999998877655410
Q ss_pred --cCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEE
Q 009380 455 --NNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 532 (536)
Q Consensus 455 --~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~i 532 (536)
.......+ ..++|+|+|.+|++++ |.|++||+.+++.+..+..+...+ ..+.|+| ++.+|++++.||.|++
T Consensus 1172 ~~~~~~~~~v--~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i--~~~~~s~-dg~~l~~~~~dg~v~v 1244 (1249)
T 3sfz_A 1172 EGTATHGGWV--TDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNL--KKIHVSP-DFRTYVTVDNLGILYI 1244 (1249)
T ss_dssp -----CCSCC--CEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCC--CCCEECS-SSCCEEEECTTCCEEE
T ss_pred ccccccCceE--EEEEECCCCCEEEECC--CeEEEEECCCCceeeeeeccCCcc--cEEEECC-CCCEEEEecCCcEEEE
Confidence 01122223 3478999999999986 899999999999988887765443 3578888 6799999999999999
Q ss_pred Eec
Q 009380 533 WTS 535 (536)
Q Consensus 533 W~~ 535 (536)
|++
T Consensus 1245 w~l 1247 (1249)
T 3sfz_A 1245 LQV 1247 (1249)
T ss_dssp ECC
T ss_pred Eee
Confidence 997
No 63
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-36 Score=334.59 Aligned_cols=331 Identities=10% Similarity=-0.018 Sum_probs=237.7
Q ss_pred cccceeeeecCCCCcccccccccccccccccccceEEecccccCcc------------ccccccCCceEEEEEEecCCcc
Q 009380 182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE------------NIARIMPGRITQMKFLPCSDVR 249 (536)
Q Consensus 182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~------------~~~~~~~~~I~~v~~~p~~~~~ 249 (536)
|...|.++.|+|++..++ .+..||.|++||+..... ...+.|.+.|++++|+|. ++.
T Consensus 97 ~~~~V~~v~~sp~g~~l~----------sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~-~~~ 165 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWML----------IGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR-DIG 165 (902)
T ss_dssp CSSCEEEEECCTTCSEEE----------EEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT-EEE
T ss_pred CCCCEEEEEECCCCCEEE----------EEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC-CCC
Confidence 667899999999999888 457889999999854432 234678999999999993 247
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEeccC------------------CCCEEEEEEecCCCCEEEEEECCCeEEEEE
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH------------------LGPISGIVTQQYCLSKIFTSCYDGLIRLMD 311 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h------------------~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd 311 (536)
+|++|+.||.| +||+.+ ...+..+..| ...|.+++|+|++ .+|++++.||+|++||
T Consensus 166 ~l~~g~~dg~v-lWd~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd 239 (902)
T 2oaj_A 166 TVLISYEYVTL-TYSLVE----NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWD 239 (902)
T ss_dssp EEEEECSSCEE-EEETTT----TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEE
T ss_pred EEEEEeCCCcE-EEECCC----CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEE
Confidence 89999999999 999987 5566666555 5789999999998 9999999999999999
Q ss_pred CCCCeEEEe--e----c-------------CCCceeEEEec----CCCCCEEEEEE------------------------
Q 009380 312 AEKEVFDLV--Y----S-------------SEYAVFSLSQQ----PNNVNTLYFGE------------------------ 344 (536)
Q Consensus 312 ~~~~~~~~~--~----~-------------~~~~i~~l~~~----~~~~~~l~~g~------------------------ 344 (536)
+.+++.... + . +...|.+++|+ |++..+|++|+
T Consensus 240 ~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~ 319 (902)
T 2oaj_A 240 ANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSIT 319 (902)
T ss_dssp TTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGC
T ss_pred CCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcccc
Confidence 988766442 1 1 23468888884 33223444443
Q ss_pred ----------------------------------------------------CCCeEEEEECCCCcccee----------
Q 009380 345 ----------------------------------------------------GQGGLNIWDVRSRKSATE---------- 362 (536)
Q Consensus 345 ----------------------------------------------------~dg~i~i~d~~~~~~~~~---------- 362 (536)
.||.|++||+.++.....
T Consensus 320 s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~ 399 (902)
T 2oaj_A 320 SYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSW 399 (902)
T ss_dssp CHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTT
T ss_pred chhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccc
Confidence 334556666544422111
Q ss_pred -------------------------------EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee-
Q 009380 363 -------------------------------WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV- 410 (536)
Q Consensus 363 -------------------------------~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~- 410 (536)
+.+|...+.+++|+|++ ++|++|+.|++|++||+.++.......+..
T Consensus 400 ~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~ 478 (902)
T 2oaj_A 400 LRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQDNASFEVN 478 (902)
T ss_dssp BTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTTTBCEEEE
T ss_pred cCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-cEEEEecCCCcEEEEECCCccccCCceEEee
Confidence 11233334444556766 799999999999999998864211111211
Q ss_pred ------ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc-----------------------------------
Q 009380 411 ------LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT----------------------------------- 449 (536)
Q Consensus 411 ------~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~----------------------------------- 449 (536)
.+|...|++++|+|+|++||+|+.||+|+|||+.+++..
T Consensus 479 l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (902)
T 2oaj_A 479 LSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAP 558 (902)
T ss_dssp HHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCC
T ss_pred chhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCC
Confidence 178899999999999999999999999999998765310
Q ss_pred -------eEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccce-----ecc-CCceeeeeeeEeec--
Q 009380 450 -------SMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVA-----TLQ-SPYISAIPCRFHAH-- 514 (536)
Q Consensus 450 -------~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~-----~l~-~~~~~~~~~~~~~~-- 514 (536)
..+.........+.. ++|+|+| +|++|+.|+.|+|||+.+...+. .+. +|...+ ..++|+
T Consensus 559 ~~~~~g~~~~~~l~~h~~~V~s--vafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V--~sv~Fs~~ 633 (902)
T 2oaj_A 559 TGVRQGFMPSTAVHANKGKTSA--INNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACV--TCIEFVIM 633 (902)
T ss_dssp TTCSEEEEEEEEECCCSCSEEE--EEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCE--EEEEEEEE
T ss_pred CCCCCccceeEEEEcCCCcEEE--EEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccce--EEEEEEEE
Confidence 001111112223444 7799999 99999999999999998876653 232 433333 467787
Q ss_pred ---CCC--CCEEEEEccCCeEEEEec
Q 009380 515 ---PHQ--VGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 515 ---p~~--~~~lasgs~Dg~v~iW~~ 535 (536)
|+. +.+|++|+.||+|++||+
T Consensus 634 ~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 634 EYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp ECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred ecCCCCCcceEEEEEecCCcEEEEEE
Confidence 731 479999999999999997
No 64
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-35 Score=287.32 Aligned_cols=280 Identities=14% Similarity=0.097 Sum_probs=237.5
Q ss_pred cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
...+.+|.+.|++++| | ++.+|++|+.||.|++||+.+ ......+..|...|.+++|+|++ .+|++++.||.
T Consensus 11 ~~~l~~h~~~v~~~~~-~--~~~~l~s~~~dg~v~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~ 82 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-V--DDSKVASVSRDGTVRLWSKDD----QWLGTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTM 82 (313)
T ss_dssp EEEECCCSSCEEEEEE-E--ETTEEEEEETTSEEEEEEESS----SEEEEEEEECSSCEEEEEEETTT-TEEEEEETTSC
T ss_pred HHHhhCCCCCcEEEEe-c--CCCEEEEEEcCCcEEEEECCC----CEEEEEeecCCccEEEEEECCCC-CEEEEecCCCe
Confidence 4456889999999999 8 889999999999999999986 67788888999999999999998 99999999999
Q ss_pred EEEEECCCC----eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCE
Q 009380 307 IRLMDAEKE----VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNI 382 (536)
Q Consensus 307 I~vwd~~~~----~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~ 382 (536)
|++|++... .......|...|.+++|. + +++++++.||.|++|| .++.+..+..|...|.+++|+|..+.+
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK 157 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE
Confidence 999998764 244556788999999993 3 6999999999999999 677788888999999999999944579
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCcceeec-ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCce
Q 009380 383 MATSSTDGTACIWDLRSMATDKPEPMKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRW 461 (536)
Q Consensus 383 l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 461 (536)
+++++.||.|++||... ....... |...|.+++|+|++. +++++.|+.|++||+++++.+..+.... ..
T Consensus 158 l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~ 227 (313)
T 3odt_A 158 FLTASADKTIKLWQNDK------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE---SF 227 (313)
T ss_dssp EEEEETTSCEEEEETTE------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS---SC
T ss_pred EEEEECCCCEEEEecCc------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC---ce
Confidence 99999999999999543 3334444 899999999999998 9999999999999999988877775322 22
Q ss_pred eeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 462 ISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 462 ~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
+. .+.|+|++ .|++++.|+.|++||+.+++.+..+..+...+ ..+.|+| ++. +++++.||.|++|+++
T Consensus 228 i~--~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i--~~~~~~~-~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 228 VY--CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISI--WSVDCMS-NGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EE--EEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCE--EEEEECT-TSC-EEEEETTSCEEEEESC
T ss_pred EE--EEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceE--EEEEEcc-CCC-EEEEeCCCcEEEEeCC
Confidence 33 47799999 68899999999999999999988888765443 4678888 445 7789999999999974
No 65
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-35 Score=302.72 Aligned_cols=297 Identities=16% Similarity=0.157 Sum_probs=238.9
Q ss_pred eEEecccccCccc-cccccCCceEEEEEEecCCcc-EEEEEeCCCcEEEEEC----CCCCCCCC------ceEEecc---
Q 009380 216 CVDIGSLTLKPEN-IARIMPGRITQMKFLPCSDVR-MVVAGSKLGNITFWNL----DSQQDEDN------GIYLFRT--- 280 (536)
Q Consensus 216 ~v~lw~~~~~~~~-~~~~~~~~I~~v~~~p~~~~~-~l~tg~~dg~v~iwd~----~~~~~~~~------~~~~~~~--- 280 (536)
.+.+|++...... ....|.+.|++++|+| ++. +|++|+.||.|++|++ .+ +. ....+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~~l~~~~~dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~ 99 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNP--LDESILAYGEKNSVARLARIVETDQE----GKKYWKLTIIAELRHPFA 99 (425)
T ss_dssp --------CCCEECEEEEECSCCSEEEECS--SCTTEEEEEETBTEEEEEEEEEC----------CEEEEEEEEEECCCC
T ss_pred ccccccchhhhhheeeeeccCceEEEEECC--CCCcEEEEecCCceEEEEEEecccCC----cccccccccccccccccc
Confidence 4456776433222 2244569999999999 899 9999999999999999 65 33 2333333
Q ss_pred -------CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEE
Q 009380 281 -------HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWD 353 (536)
Q Consensus 281 -------h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d 353 (536)
|...|.+++|+|++ .+|++++.||.|++||........+..|...|.+++|+|++ ++|++++.||.|++||
T Consensus 100 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd 177 (425)
T 1r5m_A 100 LSASSGKTTNQVTCLAWSHDG-NSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWN 177 (425)
T ss_dssp CC------CBCEEEEEECTTS-SEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEE
T ss_pred ccccccCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEE
Confidence 68899999999998 99999999999999996666666667789999999999998 8999999999999999
Q ss_pred CCCCccceeEeccCCC---------------eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCcee
Q 009380 354 VRSRKSATEWLLHEAR---------------INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVH 418 (536)
Q Consensus 354 ~~~~~~~~~~~~h~~~---------------i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~ 418 (536)
+.+++.+..+..+... +.+++|+|++ .+++++.||.|++||++++. ....+..|...|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~----~~~~~~~~~~~i~ 251 (425)
T 1r5m_A 178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKT----PTGKLIGHHGPIS 251 (425)
T ss_dssp TTTTEEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSS----CSEEECCCSSCEE
T ss_pred CCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCc----eeeeeccCCCceE
Confidence 9999988888877776 9999999964 68899999999999999853 4455568999999
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccccee
Q 009380 419 SAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVAT 498 (536)
Q Consensus 419 ~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~ 498 (536)
+++|+|++++|++++.|+.|++||+.+++....+... ...+ ..+.|+|++ +|++++.|+.|++||+.+++.+..
T Consensus 252 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~i--~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~ 325 (425)
T 1r5m_A 252 VLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH---SQSI--VSASWVGDD-KVISCSMDGSVRLWSLKQNTLLAL 325 (425)
T ss_dssp EEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC---SSCE--EEEEEETTT-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC---CccE--EEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEe
Confidence 9999999999999999999999999988887777422 1223 347799999 999999999999999999988888
Q ss_pred ccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 499 LQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 499 l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
+..+...+ ..+.|+| ++.+|++++.||.|+||++
T Consensus 326 ~~~~~~~i--~~~~~s~-~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 326 SIVDGVPI--FAGRISQ-DGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp EECTTCCE--EEEEECT-TSSEEEEEETTSCEEEEEC
T ss_pred cccCCccE--EEEEEcC-CCCEEEEEECCCeEEEEEC
Confidence 87755444 3678888 5699999999999999997
No 66
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.4e-35 Score=298.55 Aligned_cols=291 Identities=13% Similarity=0.063 Sum_probs=233.3
Q ss_pred ccccceecccccceeeeecCCCC-cccccccccccccccccccceEEecccccCccc-cc--cccCCceEEEEEEecCCc
Q 009380 173 ENLGFVIKDEFNGFKTCKDEGLG-VGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-IA--RIMPGRITQMKFLPCSDV 248 (536)
Q Consensus 173 ~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-~~--~~~~~~I~~v~~~p~~~~ 248 (536)
+.+...+.+|...|.++.|++++ ++++ +++.||.|+||++...... .. ..|.+.|++++|+|. ++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~----------s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~ 131 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVA----------VGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-NT 131 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEE----------EEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-EE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEE----------EEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-CC
Confidence 44456788999999999999999 7777 4578899999998644332 22 359999999999993 46
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEecc---CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCC
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT---HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEY 325 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~---h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~ 325 (536)
.+|++|+.||.|++||+.. ..+..+.. |...|.+++|+|++ .+|++++.|+.|++||+.......+..|..
T Consensus 132 ~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~ 205 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRDFSG-----SVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLDGHEIFKEKLHKA 205 (383)
T ss_dssp EEEEEEETTTEEEEEETTS-----CEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETTSCEEEEEECSSS
T ss_pred CEEEEEeCCCEEEEEECCC-----CceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECCCCEEEEeccCCC
Confidence 8999999999999999984 34445544 45889999999998 999999999999999997666777778999
Q ss_pred ceeEEEecCCCCCEEEEEECCCeEEEEECCC----CccceeEeccCCCeEEEEEec-CCCCEEEEEeCCCcEEEEeCCCC
Q 009380 326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS----RKSATEWLLHEARINTIDFNP-RNPNIMATSSTDGTACIWDLRSM 400 (536)
Q Consensus 326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~----~~~~~~~~~h~~~i~~i~~~p-~~~~~l~s~s~dg~i~iwdl~~~ 400 (536)
.|.+++|+|++..+|++++.||.|++||+++ +..+..+ .|...|.+++|+| ++ .+|++++.|+.|++||++++
T Consensus 206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBT
T ss_pred cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCC
Confidence 9999999999855999999999999999998 4455555 6999999999999 77 79999999999999999986
Q ss_pred CCCCCCcceeecc-------c----------CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceee
Q 009380 401 ATDKPEPMKVLSH-------K----------RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWIS 463 (536)
Q Consensus 401 ~~~~~~~~~~~~~-------~----------~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 463 (536)
+. ...+..| . ..+..++|+|++++ +++.|+.|++||+.+++.+..+..... ...+.
T Consensus 284 ~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~-~~~~~ 356 (383)
T 3ei3_B 284 SK----PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA-AGIIS 356 (383)
T ss_dssp TS----CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB-CSCCC
T ss_pred cc----ccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC-CceEE
Confidence 52 2222222 2 34445677777766 778999999999999988777753211 11222
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380 464 SFRAIWGWDDSCVFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 464 ~~~~~~s~~g~~l~~gs~dg~I~v~d~~~ 492 (536)
. ++|+|++.+|++|+ |+.|+|||+.+
T Consensus 357 ~--~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 357 L--NKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp E--EEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred E--EEEecCccEEEEec-CCcEEEEecCC
Confidence 2 57999999999997 99999999864
No 67
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-35 Score=294.14 Aligned_cols=294 Identities=12% Similarity=0.113 Sum_probs=250.7
Q ss_pred ceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEEe
Q 009380 177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGS 255 (536)
Q Consensus 177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~ 255 (536)
..+.+|...|.++.|+|+++.++. ++.||.|.+|++... .......|.+.|++++|+| ++++|++++
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~----------~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~ 93 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFS----------CSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC--FTKYCVTGS 93 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEE----------EESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEEEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEE----------EeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC--CCCEEEEEe
Confidence 457899999999999999998884 477899999997543 3345577999999999999 999999999
Q ss_pred CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-----CeEEEEECCCCe------------EE
Q 009380 256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-----GLIRLMDAEKEV------------FD 318 (536)
Q Consensus 256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-----g~I~vwd~~~~~------------~~ 318 (536)
.||.|++||+.+ ...+..+. |...|.+++|+|++ .+|++++.+ |.|++||+.... ..
T Consensus 94 ~dg~i~iwd~~~----~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~ 167 (369)
T 3zwl_B 94 ADYSIKLWDVSN----GQCVATWK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIH 167 (369)
T ss_dssp TTTEEEEEETTT----CCEEEEEE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSE
T ss_pred CCCeEEEEECCC----CcEEEEee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceee
Confidence 999999999987 56666666 88999999999998 999999999 999999987542 22
Q ss_pred EeecCCC--ceeEEEecCCCCCEEEEEECCCeEEEEECCC-CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380 319 LVYSSEY--AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS-RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIW 395 (536)
Q Consensus 319 ~~~~~~~--~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw 395 (536)
....+.. .+.+++|+|++ ++|++++.||.|++||+++ ++.+..+..|...|.+++|+|++ .+|++++.||.|++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~ 245 (369)
T 3zwl_B 168 KIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLV 245 (369)
T ss_dssp EEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred eccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC-CEEEEecCCceEEEE
Confidence 3334444 89999999998 8999999999999999998 67788888999999999999987 799999999999999
Q ss_pred eCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC--------------cEEEEeCCCCCcceEEeccCCCCce
Q 009380 396 DLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD--------------TIGIWSGVNFENTSMIHHNNQTGRW 461 (536)
Q Consensus 396 dl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg--------------~I~iwd~~~~~~~~~~~~~~~~~~~ 461 (536)
|++++ .......+...+.+++|+|++.++++++.++ .+++||..+++....+.... ..
T Consensus 246 d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~ 317 (369)
T 3zwl_B 246 DVSTL-----QVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF---GP 317 (369)
T ss_dssp ETTTC-----CEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCS---SC
T ss_pred ECCCC-----ceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheeccc---Cc
Confidence 99985 3445556889999999999999999999988 89999999988877764322 22
Q ss_pred eeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380 462 ISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 462 ~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~ 500 (536)
+. .+.|+|++++|++++.||.|++|++..+.....+.
T Consensus 318 v~--~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 354 (369)
T 3zwl_B 318 LN--TVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYD 354 (369)
T ss_dssp EE--EEEECTTSSEEEEEETTSEEEEEEECHHHHTCCCH
T ss_pred EE--EEEECCCCCEEEEEcCCCeEEEEECccccchhHHH
Confidence 33 37799999999999999999999999876655543
No 68
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.6e-36 Score=307.60 Aligned_cols=294 Identities=18% Similarity=0.260 Sum_probs=228.4
Q ss_pred ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC-------CCCceEEeccCC------------CCEEEEEEec
Q 009380 232 IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD-------EDNGIYLFRTHL------------GPISGIVTQQ 292 (536)
Q Consensus 232 ~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~-------~~~~~~~~~~h~------------~~V~~l~~~~ 292 (536)
.+.+.|++++|+| ++.+||+|+.||.|+||++.+... .......+.+|. ..|.+++|+|
T Consensus 26 ~~~~~V~~v~~s~--~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 26 AEADIISTVEFNH--SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CGGGSEEEEEECS--SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred cccCcEEEEEECC--CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 4678999999999 999999999999999999986321 112477888998 8899999999
Q ss_pred CCC-CEEEEEECCCeEEEEECCCCeEE-----------------------------------------EeecCCCceeEE
Q 009380 293 YCL-SKIFTSCYDGLIRLMDAEKEVFD-----------------------------------------LVYSSEYAVFSL 330 (536)
Q Consensus 293 ~~~-~~l~s~s~dg~I~vwd~~~~~~~-----------------------------------------~~~~~~~~i~~l 330 (536)
++. .+|++++.|+.|++||+.++... ...+|...|.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 863 58999999999999999764331 124688999999
Q ss_pred EecCCCCCEEEEEECCCeEEEEECCC-Cccce-------eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009380 331 SQQPNNVNTLYFGEGQGGLNIWDVRS-RKSAT-------EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT 402 (536)
Q Consensus 331 ~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~-------~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~ 402 (536)
+|+|++ ++|++| .||.|++||+++ ++.+. .+..|...|.+++|+|+++++|++|+.||.|++||++++..
T Consensus 184 ~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 184 SINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp EECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred EEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 999988 789988 899999999984 33343 25589999999999998767999999999999999998652
Q ss_pred CCCCcceeecccC------------ceeEEEEccCCCeEEEEeCCCcEEEEeCCC-CCcceEEeccCCCCc---------
Q 009380 403 DKPEPMKVLSHKR------------AVHSAYFSPSGSSLATTSFDDTIGIWSGVN-FENTSMIHHNNQTGR--------- 460 (536)
Q Consensus 403 ~~~~~~~~~~~~~------------~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~--------- 460 (536)
.......+..|.. .|.+++|+|+|.+|++++. +.|++||+++ ++.+..+........
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence 2212344445654 8999999999999999998 9999999987 777776653221110
Q ss_pred -eeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCc--------------------------------eeee
Q 009380 461 -WISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY--------------------------------ISAI 507 (536)
Q Consensus 461 -~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~--------------------------------~~~~ 507 (536)
....+.++|+|++.+|++|+.||.|++||+.+++.+ .+..+. ...
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 418 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK- 418 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSC-
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCc-
Confidence 001233789999999999999999999999988654 222111 111
Q ss_pred eeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 508 PCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 508 ~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
...++||| ++.+||+++.++ +++|.
T Consensus 419 i~~~~~~p-~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 419 ILHTAWHP-KENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp CCEEEECS-SSSEEEEECSSC-EEEEE
T ss_pred eeEEEECC-CCCEEEEEecce-eeeec
Confidence 24689999 569999998876 77775
No 69
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.4e-36 Score=298.12 Aligned_cols=292 Identities=12% Similarity=0.096 Sum_probs=235.5
Q ss_pred ceecccccceeeeecCCC---CcccccccccccccccccccceEEecccccCcc-ccccc-----cCCceEEEEEEecCC
Q 009380 177 FVIKDEFNGFKTCKDEGL---GVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIARI-----MPGRITQMKFLPCSD 247 (536)
Q Consensus 177 ~~~~~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~~~-----~~~~I~~v~~~p~~~ 247 (536)
.+..+|...|.++.|+|+ +..+. +....++.|.+|++..... ..... |.+.|++++|+| +
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~---------~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~ 80 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLV---------FATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY--D 80 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEE---------EEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE--C
T ss_pred EeecCCCCceEEEEEecccCCCCceE---------EEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc--C
Confidence 355689999999999985 33111 1234556899999853322 22232 557899999999 6
Q ss_pred ----ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec-CCCCEEEEEECCCeEEEEECCCCeEEEee-
Q 009380 248 ----VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ-YCLSKIFTSCYDGLIRLMDAEKEVFDLVY- 321 (536)
Q Consensus 248 ----~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~~l~s~s~dg~I~vwd~~~~~~~~~~- 321 (536)
+.+|++|+.||.|++||+.+ ...+..+.+|...|.+++|+| ++ .+|++++.||.|++||+.++.....+
T Consensus 81 ~~~~~~~l~~~~~dg~i~v~d~~~----~~~~~~~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~ 155 (366)
T 3k26_A 81 SNTSHPLLAVAGSRGIIRIINPIT----MQCIKHYVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTLVAIFG 155 (366)
T ss_dssp TTTCCEEEEEEETTCEEEEECTTT----CCEEEEEESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCCCCEEEEecCCCEEEEEEchh----ceEeeeecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeEEEEec
Confidence 67999999999999999987 678888999999999999999 66 99999999999999999998777665
Q ss_pred ---cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec----------------------------cCCCe
Q 009380 322 ---SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL----------------------------HEARI 370 (536)
Q Consensus 322 ---~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----------------------------h~~~i 370 (536)
.|...|.+++|+|++ ++|++++.||.|++||+++++.+..+.. |...|
T Consensus 156 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 156 GVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp STTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred ccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 688999999999988 8999999999999999998766544433 99999
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC----------CCcceeecccCceeEEEEccC--CCeEEEEeCCCcE
Q 009380 371 NTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK----------PEPMKVLSHKRAVHSAYFSPS--GSSLATTSFDDTI 438 (536)
Q Consensus 371 ~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~----------~~~~~~~~~~~~v~~l~~sp~--g~~l~t~s~dg~I 438 (536)
.+++|+ + .+|++++.||.|++||+++..... ........|...|++++|+|+ +.+|++++.||.|
T Consensus 235 ~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i 311 (366)
T 3k26_A 235 DCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKL 311 (366)
T ss_dssp CEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCE
T ss_pred EEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcE
Confidence 999999 3 699999999999999998764200 113344468899999999999 9999999999999
Q ss_pred EEEeCCCCCcce----EEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380 439 GIWSGVNFENTS----MIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA 491 (536)
Q Consensus 439 ~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~ 491 (536)
++||+.+++... .+... .....+. .++|+|++++|++++.||.|++||+.
T Consensus 312 ~vwd~~~~~~~~~~~~~~~~~-~~~~~v~--~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 312 YVWDLEVEDPHKAKCTTLTHH-KCGAAIR--QTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEECCSSSGGGCEEEEECCT-TCCSCEE--EEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEECCCCCCccccceEEccc-ccCCceE--EEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 999999887654 22211 1122333 47899999999999999999999975
No 70
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-35 Score=285.34 Aligned_cols=299 Identities=13% Similarity=0.151 Sum_probs=245.9
Q ss_pred ccccccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCC
Q 009380 169 ACKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSD 247 (536)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~ 247 (536)
..+.+++...+.+|.+.|.++.| +++..++ +++.||.|++|++.... ......|.+.|.+++|+| +
T Consensus 4 ~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~----------s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~ 70 (313)
T 3odt_A 4 PFTGYQLSATLKGHDQDVRDVVA-VDDSKVA----------SVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS--E 70 (313)
T ss_dssp -CCCCEEEEEECCCSSCEEEEEE-EETTEEE----------EEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEET--T
T ss_pred ccccHHHHHHhhCCCCCcEEEEe-cCCCEEE----------EEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECC--C
Confidence 33456677889999999999999 9998887 45788999999985433 344567899999999999 9
Q ss_pred ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCce
Q 009380 248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAV 327 (536)
Q Consensus 248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i 327 (536)
+.+|++|+.||.|++|++..... ...+..+.+|...|.++.| ++ ++|++++.||.|++|| ..........|...+
T Consensus 71 ~~~l~~~~~dg~i~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~--~~-~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v 145 (313)
T 3odt_A 71 KELLLFGGKDTMINGVPLFATSG-EDPLYTLIGHQGNVCSLSF--QD-GVVISGSWDKTAKVWK-EGSLVYNLQAHNASV 145 (313)
T ss_dssp TTEEEEEETTSCEEEEETTCCTT-SCC-CEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEE-TTEEEEEEECCSSCE
T ss_pred CCEEEEecCCCeEEEEEeeecCC-CCcccchhhcccCEEEEEe--cC-CEEEEEeCCCCEEEEc-CCcEEEecccCCCce
Confidence 99999999999999999986432 4567788999999999999 34 7999999999999999 334445556788999
Q ss_pred eEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec-cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 009380 328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL-HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPE 406 (536)
Q Consensus 328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~ 406 (536)
.+++|.|...+++++++.||.|++|| ..+....+.. |...|.+++|+|++ . +++++.||.|++||+++++ .
T Consensus 146 ~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~----~ 217 (313)
T 3odt_A 146 WDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGD----V 217 (313)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCC----E
T ss_pred eEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchh----h
Confidence 99999984448999999999999999 4556666766 89999999999977 3 8999999999999999853 4
Q ss_pred cceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEE
Q 009380 407 PMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVE 486 (536)
Q Consensus 407 ~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~ 486 (536)
...+..|...|++++|+|++ .|++++.||.|++||+.+++....+..... .+ ..+.|+|++. +++++.|+.|+
T Consensus 218 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~i--~~~~~~~~~~-~~~~~~dg~i~ 290 (313)
T 3odt_A 218 LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI---SI--WSVDCMSNGD-IIVGSSDNLVR 290 (313)
T ss_dssp EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS---CE--EEEEECTTSC-EEEEETTSCEE
T ss_pred hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc---eE--EEEEEccCCC-EEEEeCCCcEE
Confidence 55566899999999999999 699999999999999999988777754321 23 3477999998 56788999999
Q ss_pred EEcCCccccceecc
Q 009380 487 VISPAQRRSVATLQ 500 (536)
Q Consensus 487 v~d~~~~~~~~~l~ 500 (536)
+|++.+++.+....
T Consensus 291 iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 291 IFSQEKSRWASEDE 304 (313)
T ss_dssp EEESCGGGCCC---
T ss_pred EEeCCCCceeehhh
Confidence 99999987665543
No 71
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.4e-36 Score=307.90 Aligned_cols=281 Identities=11% Similarity=0.072 Sum_probs=229.9
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK 314 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~ 314 (536)
..+++++|+| ++.+|++|+.||.|++|++.+ ......+..| ..+....|++++ .+|++++.||.|++||+.+
T Consensus 57 ~~~~~~~~s~--~g~~l~~~~~d~~v~i~d~~~----~~~~~~~~~~-~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 57 DAGKGNTFEK--VGSHLYKARLDGHDFLFNTII----RDGSKMLKRA-DYTAVDTAKLQM-RRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp BCCTTCEEEE--EETTEEEEEETTEEEEEECCS----EETTTTSCSC-CEEEEEEECSSS-CEEEEEETTSCEEEECTTS
T ss_pred ccccceeeee--cCCeEEEEEcCCcEEEEEecc----cceeeEEecC-CceEEEEEecCC-CEEEEEECCCCEEEEeCCC
Confidence 3466899999 999999999999999999987 3344444455 444555788888 9999999999999999999
Q ss_pred CeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 009380 315 EVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTAC 393 (536)
Q Consensus 315 ~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~ 393 (536)
+.....+ .|...|.+++|+|++ ++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++ .+|++++.||.|+
T Consensus 129 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~ 206 (420)
T 3vl1_A 129 NLQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIR 206 (420)
T ss_dssp CEEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEE
T ss_pred cceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEE
Confidence 8877764 789999999999998 799999999999999999999999999999999999999987 7999999999999
Q ss_pred EEeCCCCCCCCCCcceee---cc---------------------cCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc
Q 009380 394 IWDLRSMATDKPEPMKVL---SH---------------------KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT 449 (536)
Q Consensus 394 iwdl~~~~~~~~~~~~~~---~~---------------------~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~ 449 (536)
+||+++++ ....+. .| ...+.+++|+|++++|++++.||.|++||+++++..
T Consensus 207 iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 282 (420)
T 3vl1_A 207 LWECGTGT----TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT 282 (420)
T ss_dssp EEETTTTE----EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred EeECCCCc----eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 99999853 222222 13 345555666889999999999999999999988776
Q ss_pred eEEeccCCCCceeeeeEEEEcCCCC-EEEEEcCCCcEEEEcCCcccc-ceeccCCceeeeeeeEeecCCCCCEEEEEccC
Q 009380 450 SMIHHNNQTGRWISSFRAIWGWDDS-CVFIGNMTRTVEVISPAQRRS-VATLQSPYISAIPCRFHAHPHQVGTLAGATGG 527 (536)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs~dg~I~v~d~~~~~~-~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D 527 (536)
..+... ....+ ..++|+|++. +|++|+.||.|++||+.+++. +..+..++...+.. +.+. ++.+|++++.|
T Consensus 283 ~~~~~~--~~~~v--~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~-~~~~--~~~~l~s~~~d 355 (420)
T 3vl1_A 283 IQLPSK--FTCSC--NSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINN-VYFA--AGALFVSSGFD 355 (420)
T ss_dssp EEECCT--TSSCE--EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEE-EEEE--TTEEEEEETTT
T ss_pred EEcccc--cCCCc--eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceE-EEeC--CCCEEEEecCC
Confidence 666331 12223 3478999998 999999999999999998754 77787766666533 4444 45799999999
Q ss_pred CeEEEEecC
Q 009380 528 GQVYVWTSD 536 (536)
Q Consensus 528 g~v~iW~~d 536 (536)
|.|+||++.
T Consensus 356 ~~v~iw~~~ 364 (420)
T 3vl1_A 356 TSIKLDIIS 364 (420)
T ss_dssp EEEEEEEEC
T ss_pred ccEEEEecc
Confidence 999999963
No 72
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.4e-36 Score=308.76 Aligned_cols=298 Identities=14% Similarity=0.103 Sum_probs=229.2
Q ss_pred cccccceecccccceeeeecCCC-CcccccccccccccccccccceEEecccccCccc---cccccCCceEEEEEEecCC
Q 009380 172 DENLGFVIKDEFNGFKTCKDEGL-GVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN---IARIMPGRITQMKFLPCSD 247 (536)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~---~~~~~~~~I~~v~~~p~~~ 247 (536)
.+.+.....+|...|.++.|+|. +.+|+ +++.||.|+|||+...... ...+|.+.|++|+|+|. +
T Consensus 108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~la----------sGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-~ 176 (435)
T 4e54_B 108 SYRILQKAAPFDRRATSLAWHPTHPSTVA----------VGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-N 176 (435)
T ss_dssp TTTSCCEEEECSSCEEEEEECSSCTTCEE----------EEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-C
T ss_pred ceeecccCCCCCCCEEEEEEeCCCCCEEE----------EEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-C
Confidence 34455667889999999999995 45666 4688999999998654322 23579999999999984 6
Q ss_pred ccEEEEEeCCCcEEEEECCCCCCCCCceEEec---cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC
Q 009380 248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR---THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE 324 (536)
Q Consensus 248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~ 324 (536)
+.+|++|+.||+|+|||+.. .....+. .+...+.+++|+|++ .+|++|+.||.|++||++......+..|.
T Consensus 177 ~~~l~s~s~D~~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~~~~~~~h~ 250 (435)
T 4e54_B 177 TNQFYASSMEGTTRLQDFKG-----NILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKELWNLRMHK 250 (435)
T ss_dssp TTEEEEECSSSCEEEEETTS-----CEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCBCCCSBCCS
T ss_pred CCEEEEEeCCCEEEEeeccC-----CceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcceeEEEeccc
Confidence 78999999999999999975 2233332 334568899999998 99999999999999999887777777899
Q ss_pred CceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee---EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCC
Q 009380 325 YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE---WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMA 401 (536)
Q Consensus 325 ~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~---~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~ 401 (536)
..|.+++|+|++..+|++|+.|+.|++||+++.+.... ..+|...|++++|+|++ .+|++++.||.|+|||++++.
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSS
T ss_pred ceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCc
Confidence 99999999999878999999999999999998765433 35799999999999987 799999999999999999864
Q ss_pred CCCCCcceeecccC------ceeEEEEccCCCeEEEEeC------------CCcEEEEeCCCCCcceEEeccCCCCceee
Q 009380 402 TDKPEPMKVLSHKR------AVHSAYFSPSGSSLATTSF------------DDTIGIWSGVNFENTSMIHHNNQTGRWIS 463 (536)
Q Consensus 402 ~~~~~~~~~~~~~~------~v~~l~~sp~g~~l~t~s~------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 463 (536)
.......|.. .+..+.|+|++.++++++. ++.|++||..+++.+..+.... ...+.
T Consensus 330 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~--~~~v~ 403 (435)
T 4e54_B 330 ----CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE--SSGIS 403 (435)
T ss_dssp ----SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS--CCCCC
T ss_pred ----cceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC--CCcEE
Confidence 2333333321 2344567777766666542 3579999999988777663221 11222
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380 464 SFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS 495 (536)
Q Consensus 464 ~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~ 495 (536)
.+ .+|+|+|.+|++|+ |+.|+||++.+++.
T Consensus 404 s~-~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 404 SL-NEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CE-EEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EE-EEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 21 35999999999886 78999999998864
No 73
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=309.05 Aligned_cols=295 Identities=15% Similarity=0.171 Sum_probs=242.7
Q ss_pred ccccceeeeecCCCCcccccccccccccccccccceEEeccccc-----CccccccccCCceEEEEEEecCC-ccEEEEE
Q 009380 181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL-----KPENIARIMPGRITQMKFLPCSD-VRMVVAG 254 (536)
Q Consensus 181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~-----~~~~~~~~~~~~I~~v~~~p~~~-~~~l~tg 254 (536)
.|...|.++.|++++..++. ++.||.|++|++.. ........|.+.|++++|+| + +.+|++|
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~----------~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~ 132 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAG----------ALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA--KQDNVLASG 132 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEE----------EESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS--SSTTBEEEE
T ss_pred ecCCceEEEEECCCCCeEEE----------EccCCeEEEeecccccccccchhhccCCccceEEEEEcC--CCCCEEEEE
Confidence 57889999999999999884 46789999999865 24445677999999999999 7 8999999
Q ss_pred eCCCcEEEEECCCCCC-----CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC------
Q 009380 255 SKLGNITFWNLDSQQD-----EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS------ 323 (536)
Q Consensus 255 ~~dg~v~iwd~~~~~~-----~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~------ 323 (536)
+.||.|++||+.+... .......+..|...|.+++|+|++..+|++++.||.|++||++++.....+..
T Consensus 133 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 212 (416)
T 2pm9_A 133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSG 212 (416)
T ss_dssp CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSC
T ss_pred cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccc
Confidence 9999999999987431 01122334679999999999999558999999999999999999876655543
Q ss_pred -CCceeEEEecCCCCCEEEEEECCC---eEEEEECCCC-ccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 009380 324 -EYAVFSLSQQPNNVNTLYFGEGQG---GLNIWDVRSR-KSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDL 397 (536)
Q Consensus 324 -~~~i~~l~~~~~~~~~l~~g~~dg---~i~i~d~~~~-~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl 397 (536)
...|.+++|+|++..++++++.|+ .|++||++++ ..+..+. +|...|.+++|+|.++.+|++++.||.|++||+
T Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence 688999999999878999999999 9999999986 5677787 899999999999944479999999999999999
Q ss_pred CCCCCCCCCcceeecccCceeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCcceEEe---------------ccC-----
Q 009380 398 RSMATDKPEPMKVLSHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTSMIH---------------HNN----- 456 (536)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~t~s~dg~I~iwd~~~~~~~~~~~---------------~~~----- 456 (536)
++++ ....+..|...|.+++|+|++ .+|++++.|+.|++||+.+........ +..
T Consensus 293 ~~~~----~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (416)
T 2pm9_A 293 ESAE----QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESK 368 (416)
T ss_dssp SSCC----EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CC
T ss_pred CCCc----cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccc
Confidence 9853 455566899999999999998 899999999999999998765433210 000
Q ss_pred ------------CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 457 ------------QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 457 ------------~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
.....+ ..++|+|+|++|++|+.|+.|+||++.+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~--~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 369 EKPSVFHLQAPTWYGEPS--PAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp SCCCSSCCCCCSTTCCCS--CCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccCCccccCCc--cceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 011111 24779999999999999999999998764
No 74
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.1e-35 Score=290.79 Aligned_cols=285 Identities=12% Similarity=0.126 Sum_probs=237.3
Q ss_pred cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCC-EEEEEECCCeE
Q 009380 229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLS-KIFTSCYDGLI 307 (536)
Q Consensus 229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-~l~s~s~dg~I 307 (536)
+...|.+.|++++|+| ++.+|++|+.||.|+||++..... ......+..|...|.+++|+|++ . +|++++.||.|
T Consensus 6 ~~~~h~~~v~~~~~s~--~~~~l~~~~~d~~v~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i 81 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAK-NVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEI 81 (342)
T ss_dssp CSSCCSSCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTT-EEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCE
T ss_pred cccCCCCcEEEEEEcC--CCCEEEEEcCCCeEEEEEeCCCCc-cccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeE
Confidence 3468999999999999 999999999999999999986321 11355666899999999999998 8 99999999999
Q ss_pred EEEEC-CCCeEEEeec--CCCceeEEEecCCCCCEEEEEECCCeEEEEECCC---------CccceeEeccCCCeEEEEE
Q 009380 308 RLMDA-EKEVFDLVYS--SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS---------RKSATEWLLHEARINTIDF 375 (536)
Q Consensus 308 ~vwd~-~~~~~~~~~~--~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~---------~~~~~~~~~h~~~i~~i~~ 375 (536)
++||+ .++....+.. |...|.+++|+| + ++|++++.||.|++||+++ ++++..+. |...|.+++|
T Consensus 82 ~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~ 158 (342)
T 1yfq_A 82 LKVDLIGSPSFQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDT 158 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEE
T ss_pred EEEEeccCCceEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEe
Confidence 99999 9888887888 999999999999 5 8999999999999999998 77777776 8999999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCC-CCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCC------C
Q 009380 376 NPRNPNIMATSSTDGTACIWDLRS-MATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNF------E 447 (536)
Q Consensus 376 ~p~~~~~l~s~s~dg~i~iwdl~~-~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~------~ 447 (536)
+|++ +++++.|+.|++||+++ +. .........|...|.+++|+| ++.+|++++.||.|++|++... +
T Consensus 159 ~~~~---l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 159 NSSR---LIVGMNNSQVQWFRLPLCED--DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp CSSE---EEEEESTTEEEEEESSCCTT--CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred cCCc---EEEEeCCCeEEEEECCcccc--ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence 9854 89999999999999987 53 112234447889999999999 9999999999999999999876 5
Q ss_pred cceEEeccCCC----CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEE
Q 009380 448 NTSMIHHNNQT----GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG 523 (536)
Q Consensus 448 ~~~~~~~~~~~----~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las 523 (536)
....+...... .....+..++|+|++++|++|+.||.|++||+.+++.+..+.+||...+ ..++ | ++.+|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v-~~~~--~-~~~~l~s 309 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV-VKIA--C-SDNILCL 309 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEE-EEEE--E-CSSEEEE
T ss_pred cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCc-eEec--C-CCCeEEE
Confidence 56665432210 0011233478999999999999999999999999999999988744444 2344 5 6799999
Q ss_pred EccCCe
Q 009380 524 ATGGGQ 529 (536)
Q Consensus 524 gs~Dg~ 529 (536)
|+.||.
T Consensus 310 ~s~Dg~ 315 (342)
T 1yfq_A 310 ATSDDT 315 (342)
T ss_dssp EEECTH
T ss_pred EecCCc
Confidence 999998
No 75
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.5e-36 Score=296.31 Aligned_cols=299 Identities=16% Similarity=0.202 Sum_probs=232.8
Q ss_pred cceecccccceeeeecCCCCcccccccccccccccccc---cceEEecccccCccc--cccccCCceEEEEEEecCC---
Q 009380 176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEV---GSCVDIGSLTLKPEN--IARIMPGRITQMKFLPCSD--- 247 (536)
Q Consensus 176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~---dg~v~lw~~~~~~~~--~~~~~~~~I~~v~~~p~~~--- 247 (536)
..++.+|.+.|.++.|+|++..++.. ++. ||.|.||++...... ....|.+.|++++|+| +
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~---------~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 79 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTM---------GNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGA--TSLQ 79 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEE---------EC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTT--CCTT
T ss_pred hhhccCCCCceEEEEEcCCCceEEEe---------cCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcC--CCCC
Confidence 44568899999999999999765533 333 899999998654432 2236899999999999 6
Q ss_pred ccEEEEEeCCCcEEEEECCCCCCCCC-ceEEeccCCCCEEEEEE------ecCCCCEEEEEECCCeEEEEECCCCe-EEE
Q 009380 248 VRMVVAGSKLGNITFWNLDSQQDEDN-GIYLFRTHLGPISGIVT------QQYCLSKIFTSCYDGLIRLMDAEKEV-FDL 319 (536)
Q Consensus 248 ~~~l~tg~~dg~v~iwd~~~~~~~~~-~~~~~~~h~~~V~~l~~------~~~~~~~l~s~s~dg~I~vwd~~~~~-~~~ 319 (536)
+.+|++|+.||.|++||+.+ .. .+..+.+|...|.++.| +|++ .+|++++.||.|++||+.++. ...
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEA----PEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp TCCEEEEETTSCEEEECTTS----CSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSE
T ss_pred CceEEEecCCCeEEEEeCCC----CCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcce
Confidence 69999999999999999997 44 78889999999999965 5677 899999999999999999865 333
Q ss_pred -eecC----CCceeEEE----ecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEec---CCCCEEEEEe
Q 009380 320 -VYSS----EYAVFSLS----QQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNP---RNPNIMATSS 387 (536)
Q Consensus 320 -~~~~----~~~i~~l~----~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p---~~~~~l~s~s 387 (536)
+..+ ...+.+++ |++++ ++|++++.||.|++||+++++.... ..|...|.+++|+| ++ .+|++++
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~-~~l~~~~ 231 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISM-NKLVATS 231 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSC-CEEEEEE
T ss_pred eccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCC-CEEEEEC
Confidence 3233 33788888 67777 8999999999999999999887444 56899999999999 66 7999999
Q ss_pred CCCcEEEEeCCCCCCCCCC-cceeecccCceeEEEEccCCC-eEEEEeCCCcEEEEeCCCCCcce---------------
Q 009380 388 TDGTACIWDLRSMATDKPE-PMKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTS--------------- 450 (536)
Q Consensus 388 ~dg~i~iwdl~~~~~~~~~-~~~~~~~~~~v~~l~~sp~g~-~l~t~s~dg~I~iwd~~~~~~~~--------------- 450 (536)
.||.|++||+++....... ......|...|++++|+|++. +|++++.||.|++||+.......
T Consensus 232 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~ 311 (357)
T 3i2n_A 232 LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV 311 (357)
T ss_dssp STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccc
Confidence 9999999999885421110 011227999999999999998 89999999999999998654331
Q ss_pred -EEeccCCCCceeeeeEEEEcCCCCEEE-EEcCCCcEEEEcCCcccc
Q 009380 451 -MIHHNNQTGRWISSFRAIWGWDDSCVF-IGNMTRTVEVISPAQRRS 495 (536)
Q Consensus 451 -~~~~~~~~~~~~~~~~~~~s~~g~~l~-~gs~dg~I~v~d~~~~~~ 495 (536)
.+.........+. .++|+|++++|+ +++.|+.|++||+.+.+.
T Consensus 312 ~~~~~~~~~~~~v~--~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 312 SLLQNVTLSTQPIS--SLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEEEEECCSSCEE--EEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred ceeeccccCCCCee--EEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 1111111222333 478999999998 799999999999987643
No 76
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.2e-35 Score=286.71 Aligned_cols=254 Identities=15% Similarity=0.174 Sum_probs=212.7
Q ss_pred eecccccceeeeecCCCCcccccccccccccccccccceEEeccccc---CccccccccCCceEEEEEEecCCccEEEEE
Q 009380 178 VIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL---KPENIARIMPGRITQMKFLPCSDVRMVVAG 254 (536)
Q Consensus 178 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~---~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg 254 (536)
++.+|.+.|.++.|+++|+.++ +++.|+.|+||++.. .....+.+|.+.|++++|+|..++.+|++|
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~la----------s~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~ 73 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMA----------TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC 73 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEE----------EEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEE----------EEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEE
Confidence 5789999999999999999998 458899999999853 234456789999999999873247899999
Q ss_pred eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC--CCCEEEEEECCCeEEEEECCCCe---EEEeecCCCceeE
Q 009380 255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY--CLSKIFTSCYDGLIRLMDAEKEV---FDLVYSSEYAVFS 329 (536)
Q Consensus 255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~dg~I~vwd~~~~~---~~~~~~~~~~i~~ 329 (536)
+.||+|+|||+.++. ...+..+.+|...|.+++|+|+ + .+|++++.|+.|++||+.++. ......|...|.+
T Consensus 74 s~D~~v~iWd~~~~~--~~~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~ 150 (297)
T 2pm7_B 74 SYDGKVMIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 150 (297)
T ss_dssp ETTTEEEEEEBSSSC--BCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEE
T ss_pred cCCCEEEEEEcCCCc--eEEEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCceeeeeeecccCccce
Confidence 999999999998632 2456778889999999999997 6 899999999999999998752 3455678899999
Q ss_pred EEecCCC------------CCEEEEEECCCeEEEEECCCCc----cceeEeccCCCeEEEEEecCC--CCEEEEEeCCCc
Q 009380 330 LSQQPNN------------VNTLYFGEGQGGLNIWDVRSRK----SATEWLLHEARINTIDFNPRN--PNIMATSSTDGT 391 (536)
Q Consensus 330 l~~~~~~------------~~~l~~g~~dg~i~i~d~~~~~----~~~~~~~h~~~i~~i~~~p~~--~~~l~s~s~dg~ 391 (536)
++|+|+. ..+|++|+.|+.|++||+++++ ....+.+|...|.+++|+|++ ..+|++++.|++
T Consensus 151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~ 230 (297)
T 2pm7_B 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT 230 (297)
T ss_dssp EEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc
Confidence 9999973 3689999999999999998876 456788999999999999985 479999999999
Q ss_pred EEEEeCCCCCCCCC-CcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380 392 ACIWDLRSMATDKP-EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 392 i~iwdl~~~~~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~ 444 (536)
|+|||++....... .......|...|.+++|+|+|++|++++.|+.|+||+..
T Consensus 231 v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 99999987421100 111113678899999999999999999999999999975
No 77
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.7e-34 Score=293.22 Aligned_cols=277 Identities=16% Similarity=0.196 Sum_probs=230.9
Q ss_pred eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEE--eccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380 237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYL--FRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK 314 (536)
Q Consensus 237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~ 314 (536)
++.|+|++ + ++|++|. |++|+|||+.+ +..... +.+|...|++|+|+|++ .+|++|+.||+|++||+++
T Consensus 108 ~~~l~wS~--~-n~lAvgl-d~tV~lWd~~t----g~~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~ 178 (420)
T 4gga_A 108 LNLVDWSS--G-NVLAVAL-DNSVYLWSASS----GDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQ 178 (420)
T ss_dssp CBCEEECT--T-SEEEEEE-TTEEEEEETTT----CCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTT
T ss_pred ceeEEECC--C-CEEEEEe-CCEEEEEECCC----CCEEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCC
Confidence 56799997 4 4777776 89999999998 555544 45788899999999999 9999999999999999999
Q ss_pred CeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc-cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380 315 EVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWLLHEARINTIDFNPRNPNIMATSSTDGTA 392 (536)
Q Consensus 315 ~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i 392 (536)
++... ..+|...+.++++++ .+|++|+.|+.+.+||.+... .+..+.+|...+..+.|+|++ .++++++.|+.|
T Consensus 179 ~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v 254 (420)
T 4gga_A 179 QKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLV 254 (420)
T ss_dssp TEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred CcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC-Ceeeeeeccccc
Confidence 87654 446888999988864 689999999999999998754 467788999999999999987 799999999999
Q ss_pred EEEeCCCCCCCCCCcceeecccCceeEEEEccCC-CeEEE--EeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEE
Q 009380 393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSG-SSLAT--TSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIW 469 (536)
Q Consensus 393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~t--~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (536)
++||+..++...........|...|.+++|+|.+ .++++ |+.|++|++||+.++.....+.... . ...+.|
T Consensus 255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~----~--v~~~~~ 328 (420)
T 4gga_A 255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS----Q--VCSILW 328 (420)
T ss_dssp EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS----C--EEEEEE
T ss_pred eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc----c--eeeeee
Confidence 9999998764444455666899999999999965 45554 3579999999999998887775433 1 233778
Q ss_pred cCCCCEEEEEc--CCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 470 GWDDSCVFIGN--MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 470 s~~g~~l~~gs--~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
++++..+++++ .|+.|+|||+.+++++..+.+|...+ ..++|+| ++.+|++|+.||+|+|||+
T Consensus 329 ~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V--~~l~~sp-dg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 329 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV--LSLTMSP-DGATVASAAADETLRLWRC 393 (420)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCE--EEEEECT-TSSCEEEEETTTEEEEECC
T ss_pred cCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCE--EEEEEcC-CCCEEEEEecCCeEEEEEC
Confidence 99999887764 78999999999999999999876554 4688999 6799999999999999997
No 78
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.7e-35 Score=296.02 Aligned_cols=295 Identities=13% Similarity=0.014 Sum_probs=238.7
Q ss_pred eecccccceeeeecCCCCcccccccccccccccccccceEEecccccC---ccccccccCCceEEEEEEecCCccEEEEE
Q 009380 178 VIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK---PENIARIMPGRITQMKFLPCSDVRMVVAG 254 (536)
Q Consensus 178 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~---~~~~~~~~~~~I~~v~~~p~~~~~~l~tg 254 (536)
.+..|.+.|.++.|+|+++.++. ++.+|.|.+|++... .......|.+.|++++|+| ++.+|++|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~----------~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~ 70 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAI----------CPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP--DSNRIVTC 70 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEE----------ECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET--TTTEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEE----------EeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC--CCCEEEEE
Confidence 34568899999999999998884 467899999998655 4455678999999999999 99999999
Q ss_pred eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe----EEEe-ecCCCceeE
Q 009380 255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV----FDLV-YSSEYAVFS 329 (536)
Q Consensus 255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~----~~~~-~~~~~~i~~ 329 (536)
+.||.|++||+.+.. ......+..|...|.+++|+|++ .+|++++.|+.|++||+..+. .... ..|...|.+
T Consensus 71 ~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~ 147 (372)
T 1k8k_C 71 GTDRNAYVWTLKGRT--WKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS 147 (372)
T ss_dssp ETTSCEEEEEEETTE--EEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred cCCCeEEEEECCCCe--eeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeE
Confidence 999999999997621 12234457799999999999998 999999999999999998764 2222 457889999
Q ss_pred EEecCCCCCEEEEEECCCeEEEEECC------------------CCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380 330 LSQQPNNVNTLYFGEGQGGLNIWDVR------------------SRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGT 391 (536)
Q Consensus 330 l~~~~~~~~~l~~g~~dg~i~i~d~~------------------~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~ 391 (536)
++|+|++ ++|++++.||.|++||++ .++.+..+..|...|.+++|+|++ .+|++++.||.
T Consensus 148 ~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~ 225 (372)
T 1k8k_C 148 LDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDST 225 (372)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTE
T ss_pred EEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCE
Confidence 9999988 899999999999999954 567778888899999999999987 79999999999
Q ss_pred EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC--CC--cceE----------------
Q 009380 392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FE--NTSM---------------- 451 (536)
Q Consensus 392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~--~~--~~~~---------------- 451 (536)
|++||+++++ ....+..|...|.+++|+|++.+|+++ .|+.|++|++.+ ++ ....
T Consensus 226 i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (372)
T 1k8k_C 226 VCLADADKKM----AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE 300 (372)
T ss_dssp EEEEEGGGTT----EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHH
T ss_pred EEEEECCCCc----eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhh
Confidence 9999999853 455566888999999999999988777 899999999977 31 0000
Q ss_pred ------------------EeccCCCCceeeeeEEEEc-CCC---CEEEEEcCCCcEEEEcCCccccc
Q 009380 452 ------------------IHHNNQTGRWISSFRAIWG-WDD---SCVFIGNMTRTVEVISPAQRRSV 496 (536)
Q Consensus 452 ------------------~~~~~~~~~~~~~~~~~~s-~~g---~~l~~gs~dg~I~v~d~~~~~~~ 496 (536)
..........+. .++|. ++| .+|++|+.||.|++|++.+++.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 301 RFQNLDKKASSEGSAAAGAGLDSLHKNSVS--QISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp HHHHCCCCC---------CCCSSSSSSCEE--EEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred hhhhcccccccccCccccccccccccCCcc--eeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 000011222333 35554 676 99999999999999999876543
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.9e-35 Score=295.30 Aligned_cols=273 Identities=15% Similarity=0.192 Sum_probs=224.8
Q ss_pred cccccceEEecccccCccc-ccc-ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380 210 KIEVGSCVDIGSLTLKPEN-IAR-IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISG 287 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~~~~~-~~~-~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~ 287 (536)
.++.||.|.+|++...... ... .|.+.|++++|+| ++.+|++|+.||.|++||+.+ ...+..+.+|...|.+
T Consensus 108 ~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~ 181 (401)
T 4aez_A 108 AVALERNVYVWNADSGSVSALAETDESTYVASVKWSH--DGSFLSVGLGNGLVDIYDVES----QTKLRTMAGHQARVGC 181 (401)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT--TSSEEEEEETTSCEEEEETTT----CCEEEEECCCSSCEEE
T ss_pred EEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC--CCCEEEEECCCCeEEEEECcC----CeEEEEecCCCCceEE
Confidence 3468899999998554322 222 3788999999999 999999999999999999987 6788899999999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEECCC-C-eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec
Q 009380 288 IVTQQYCLSKIFTSCYDGLIRLMDAEK-E-VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL 365 (536)
Q Consensus 288 l~~~~~~~~~l~s~s~dg~I~vwd~~~-~-~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 365 (536)
++|+ + .+|++++.||.|++||++. . .......|...|.+++|+|++ .+|++|+.||.|++||+++++.+..+..
T Consensus 182 ~~~~--~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 257 (401)
T 4aez_A 182 LSWN--R-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTKTN 257 (401)
T ss_dssp EEEE--T-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEECC
T ss_pred EEEC--C-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEecC
Confidence 9994 3 7999999999999999984 3 345566789999999999987 8999999999999999999999999999
Q ss_pred cCCCeEEEEEecCCCCEEEEEe--CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe--CCCcEEEE
Q 009380 366 HEARINTIDFNPRNPNIMATSS--TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS--FDDTIGIW 441 (536)
Q Consensus 366 h~~~i~~i~~~p~~~~~l~s~s--~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s--~dg~I~iw 441 (536)
|...|.+++|+|++..++++++ .|+.|++||++++ .......+...|.+++|+|++.+|++++ .||.|++|
T Consensus 258 ~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~ 332 (401)
T 4aez_A 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-----ARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIW 332 (401)
T ss_dssp CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-----CEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEE
T ss_pred CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-----CEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEE
Confidence 9999999999998888999876 7999999999985 3455556888999999999999999954 89999999
Q ss_pred eCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380 442 SGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 442 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~ 500 (536)
|+.++............. .+..+.|+|++.+|++++.||.|++|++.+++.+....
T Consensus 333 ~~~~~~~~~~~~~~~h~~---~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 333 SYSSSGLTKQVDIPAHDT---RVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEETTEEEEEEEEECCSS---CCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred ecCCccceeEEEecCCCC---CEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 998865554433222111 23347899999999999999999999999988776543
No 80
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-34 Score=292.35 Aligned_cols=279 Identities=18% Similarity=0.212 Sum_probs=226.8
Q ss_pred ccCCc--eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEecc-CCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380 232 IMPGR--ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT-HLGPISGIVTQQYCLSKIFTSCYDGLIR 308 (536)
Q Consensus 232 ~~~~~--I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~s~s~dg~I~ 308 (536)
.|... +.++.|++ ..+++++.||.|++|++.+ +.....+.. |...|.+++|+|++ .+|++++.||.|+
T Consensus 89 ~~~~~~~~~~~~~s~----~~l~~~~~d~~v~lw~~~~----~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~ 159 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN----LNVVAVALERNVYVWNADS----GSVSALAETDESTYVASVKWSHDG-SFLSVGLGNGLVD 159 (401)
T ss_dssp TCCCCTTCBCEEECT----TSEEEEEETTEEEEEETTT----CCEEEEEECCTTCCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred CCcCCceEEEEeecC----CCEEEEECCCeEEEeeCCC----CcEeEeeecCCCCCEEEEEECCCC-CEEEEECCCCeEE
Confidence 44444 44455544 5588888999999999987 555555554 88999999999998 9999999999999
Q ss_pred EEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC-CccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380 309 LMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS-RKSATEWLLHEARINTIDFNPRNPNIMATS 386 (536)
Q Consensus 309 vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~ 386 (536)
+||+.++.... +..|...|.+++|++ ++|++|+.||.|++||++. ...+..+..|...|.+++|+|++ .+|++|
T Consensus 160 iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~ 235 (401)
T 4aez_A 160 IYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG-LQLASG 235 (401)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred EEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC-CEEEEE
Confidence 99999876554 447889999999943 6999999999999999994 56678888999999999999977 799999
Q ss_pred eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCC-eEEEEe--CCCcEEEEeCCCCCcceEEeccCCCCceee
Q 009380 387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS-SLATTS--FDDTIGIWSGVNFENTSMIHHNNQTGRWIS 463 (536)
Q Consensus 387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 463 (536)
+.||.|++||++++. ....+..|...|.+++|+|++. ++++++ .|+.|++||+.+++....+.+.. .+.
T Consensus 236 ~~d~~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~----~v~ 307 (401)
T 4aez_A 236 GNDNVVQIWDARSSI----PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS----QVT 307 (401)
T ss_dssp ETTSCEEEEETTCSS----EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS----CEE
T ss_pred eCCCeEEEccCCCCC----ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC----cEE
Confidence 999999999999843 4445568999999999999765 555544 69999999999998888775432 233
Q ss_pred eeEEEEcCCCCEEEE--EcCCCcEEEEcCCcccccee--ccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 464 SFRAIWGWDDSCVFI--GNMTRTVEVISPAQRRSVAT--LQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 464 ~~~~~~s~~g~~l~~--gs~dg~I~v~d~~~~~~~~~--l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
.++|+|++.+|++ |+.||.|++|++.++..... +.+|...+ ..+.|+| ++.+|++++.||.|+||++.
T Consensus 308 --~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v--~~~~~s~-dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 308 --SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRV--LYSALSP-DGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp --EEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCC--CEEEECT-TSSEEEEECTTSEEEEEECC
T ss_pred --EEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCE--EEEEECC-CCCEEEEEeCCCcEEEEECC
Confidence 4789999999999 55899999999988654443 44544333 4678999 67999999999999999974
No 81
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=291.02 Aligned_cols=334 Identities=13% Similarity=0.148 Sum_probs=231.6
Q ss_pred ccceecccccceeeeecCC-CCcccccccccccccccccccceEEecccccCccccc--------------cccCCceEE
Q 009380 175 LGFVIKDEFNGFKTCKDEG-LGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIA--------------RIMPGRITQ 239 (536)
Q Consensus 175 ~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~--------------~~~~~~I~~ 239 (536)
...++.+|.+.|.++.|+| ++..++. ++.||.|.+|++........ ..|.+.|++
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~----------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 104 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLS----------GGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVET 104 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEE----------EETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEE
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEE----------EcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEE
Confidence 3456788999999999999 9998884 47789999999865433222 249999999
Q ss_pred EEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC--CEEEEEECCCeEEEEECCCCeE
Q 009380 240 MKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL--SKIFTSCYDGLIRLMDAEKEVF 317 (536)
Q Consensus 240 v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~~l~s~s~dg~I~vwd~~~~~~ 317 (536)
++|+|. ++.+|++++.||.|++||+.+ ......+. +...+.++.|++.+. .++++++.||.|++||+.++..
T Consensus 105 ~~~~~~-~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 178 (408)
T 4a11_B 105 VQWYPH-DTGMFTSSSFDKTLKVWDTNT----LQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC 178 (408)
T ss_dssp EEECTT-CTTCEEEEETTSEEEEEETTT----TEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC
T ss_pred EEEccC-CCcEEEEEeCCCeEEEeeCCC----Cccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce
Confidence 999994 557999999999999999997 45555554 778899999999652 4999999999999999998765
Q ss_pred EE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc-cceeE---------------eccCCCeEEEEEecCCC
Q 009380 318 DL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEW---------------LLHEARINTIDFNPRNP 380 (536)
Q Consensus 318 ~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~---------------~~h~~~i~~i~~~p~~~ 380 (536)
.. +..|...|.+++|+|++..+|++|+.||.|++||++++. .+..+ ..|...|.+++|+|++
T Consensus 179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 257 (408)
T 4a11_B 179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG- 257 (408)
T ss_dssp CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS-
T ss_pred eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC-
Confidence 44 445889999999999986689999999999999998765 33333 5688999999999977
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCC
Q 009380 381 NIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTG 459 (536)
Q Consensus 381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 459 (536)
.+|++++.||.|++||+++++.......... .....+........+..+++++.|+.|++||+.+++.+..+....
T Consensus 258 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~--- 334 (408)
T 4a11_B 258 LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY--- 334 (408)
T ss_dssp SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS---
T ss_pred CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC---
Confidence 7999999999999999998652211111111 111222222233345667888889999999999988887774221
Q ss_pred ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 460 RWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 460 ~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
..+. .++|+|++.+|++|+.||.|++|++.+++.+......... ..+.|.....+.+++.|+.+++|+.
T Consensus 335 ~~v~--~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 335 KTVD--CCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK-----SQLNPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp SCEE--EEEEETTTTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred CeEE--EEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec-----cccccccceeecccCccCceeecCC
Confidence 2233 3789999999999999999999999999877655432221 2333434467778889999999974
No 82
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=274.52 Aligned_cols=277 Identities=16% Similarity=0.190 Sum_probs=226.5
Q ss_pred eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEe--ccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380 237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLF--RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK 314 (536)
Q Consensus 237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~ 314 (536)
+++|+||+ ++ +||+|. |++|+|||+.+ +..+..+ .+|...|++++|+|++ ++|++|+.||+|++||+++
T Consensus 28 ~~~l~WS~--~~-~lAvg~-D~tV~iWd~~t----g~~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~ 98 (318)
T 4ggc_A 28 LNLVDWSS--GN-VLAVAL-DNSVYLWSASS----GDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQ 98 (318)
T ss_dssp CBCEEECT--TS-EEEEEE-TTEEEEEETTT----CCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTT
T ss_pred ceEEEECC--CC-EEEEEe-CCEEEEEECCC----CCEEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCC
Confidence 46799998 65 777765 89999999998 5555544 5788899999999999 9999999999999999999
Q ss_pred CeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380 315 EVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTA 392 (536)
Q Consensus 315 ~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i 392 (536)
++.... ..|...+.++.+.+ .++++++.++.+.+|+...... +..+.+|...+..+.+++++ .+|++++.||.|
T Consensus 99 ~~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i 174 (318)
T 4ggc_A 99 QKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLV 174 (318)
T ss_dssp TEEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred ceeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC-CEEEEEecCcce
Confidence 876544 46777777766653 6899999999999999987644 67778999999999999987 799999999999
Q ss_pred EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeE---EEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEE
Q 009380 393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSL---ATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIW 469 (536)
Q Consensus 393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l---~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (536)
++||+++++...........+...|.++.++|++..+ ++++.++.|++||...........+... + ..+.|
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~----v--~~~~~ 248 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ----V--CSILW 248 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSC----E--EEEEE
T ss_pred eEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceee----e--eeeee
Confidence 9999998764444455566788999999999976533 3566789999999988776665544321 2 23678
Q ss_pred cCCCCEEEEE--cCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 470 GWDDSCVFIG--NMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 470 s~~g~~l~~g--s~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
++++..++++ +.|+.|+|||+.+++++.++.+|...+ ..++|+| ++.+|++|+.||+|+|||+
T Consensus 249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V--~~l~~sp-dg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV--LSLTMSP-DGATVASAAADETLRLWRC 313 (318)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCE--EEEEECT-TSSCEEEEETTTEEEEECC
T ss_pred cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCE--EEEEEcC-CCCEEEEEecCCeEEEEEC
Confidence 8998887765 478999999999999999999876544 4688999 6799999999999999997
No 83
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.8e-34 Score=315.79 Aligned_cols=292 Identities=16% Similarity=0.204 Sum_probs=246.9
Q ss_pred CccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC
Q 009380 225 KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD 304 (536)
Q Consensus 225 ~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d 304 (536)
.....+..|.+.|++++|+| ++.+|++|+.||.|+|||+.+ +..+..+.+|..+|.+++|+|++ .+|++++.|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp--~~~~la~~~~~g~v~iwd~~~----~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d 76 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHP--TEPWVLTTLYSGRVEIWNYET----QVEVRSIQVTETPVRAGKFIARK-NWIIVGSDD 76 (814)
T ss_dssp CCEEEEEEECSCEEEEEECS--SSSEEEEEETTSEEEEEETTT----TEEEEEEECCSSCEEEEEEEGGG-TEEEEEETT
T ss_pred ccceeeecCCCceEEEEECC--CCCEEEEEeCCCEEEEEECCC----CceEEEEecCCCcEEEEEEeCCC-CEEEEEeCC
Confidence 34556789999999999999 999999999999999999987 67888999999999999999999 999999999
Q ss_pred CeEEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC-ccceeEeccCCCeEEEEEecCCCCE
Q 009380 305 GLIRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR-KSATEWLLHEARINTIDFNPRNPNI 382 (536)
Q Consensus 305 g~I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~i~~~p~~~~~ 382 (536)
|.|++||+.++.... +..|...|.+++|+|++ .+|++++.||.|++||+.++ .....+.+|...|.+++|+|.++.+
T Consensus 77 g~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 155 (814)
T 3mkq_A 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155 (814)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred CeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCE
Confidence 999999999887654 44588999999999998 79999999999999999987 5677788999999999999944479
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCcceee-cccCceeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCC
Q 009380 383 MATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTG 459 (536)
Q Consensus 383 l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp--~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 459 (536)
|++++.||.|++||+..+. ...... .+...+.+++|+| ++.+|++++.||.|++||+.+++....+....
T Consensus 156 l~~~~~dg~v~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--- 228 (814)
T 3mkq_A 156 FASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--- 228 (814)
T ss_dssp EEEEETTSEEEEEETTCSS----CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS---
T ss_pred EEEEeCCCeEEEEECCCCc----ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC---
Confidence 9999999999999998753 333444 4558999999999 99999999999999999999888777664321
Q ss_pred ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 460 RWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 460 ~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
..+. .++|+|++.+|++++.||.|++||+.+++.+..+..+.... ..++|+|.....+++++.|+.+.+|++
T Consensus 229 ~~v~--~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 229 SNVS--FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERS--WCIATHPTGRKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp SCEE--EEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSE--EEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred CCEE--EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcE--EEEEEccCCCceEEEEEeCCCEEEEEc
Confidence 2233 37799999999999999999999999998888887765444 467889854344455555677888875
No 84
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.6e-34 Score=285.09 Aligned_cols=295 Identities=17% Similarity=0.130 Sum_probs=219.2
Q ss_pred ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec--CCCCEEEEEECCC
Q 009380 228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ--YCLSKIFTSCYDG 305 (536)
Q Consensus 228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~~l~s~s~dg 305 (536)
.+..+|.+.|++++|+| ++.+|++|+.||.|++|++............+.+|...|.+++|+| ++ .+|++++.||
T Consensus 5 ~~~~gH~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~dg 81 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDF--YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYG-RIIASASYDK 81 (351)
T ss_dssp CEECCCSSCEEEEEECS--SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGC-SEEEEEETTS
T ss_pred ccCcccccceeEEEEcC--CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCC-CEEEEEcCCC
Confidence 45688999999999999 9999999999999999999864322246677889999999999999 46 9999999999
Q ss_pred eEEEEECCCCe----------EEEeecCCCceeEEEecCC--CCCEEEEEECCCeEEEEECCCCccceeEe---------
Q 009380 306 LIRLMDAEKEV----------FDLVYSSEYAVFSLSQQPN--NVNTLYFGEGQGGLNIWDVRSRKSATEWL--------- 364 (536)
Q Consensus 306 ~I~vwd~~~~~----------~~~~~~~~~~i~~l~~~~~--~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--------- 364 (536)
.|++||+.++. ......|...|.+++|+|+ + ++|++++.||.|++||+++++.+..+.
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence 99999998752 3445578899999999998 6 899999999999999999887765543
Q ss_pred ----ccCCCeEEEEEecC--CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCC----CeEEEEeC
Q 009380 365 ----LHEARINTIDFNPR--NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSG----SSLATTSF 434 (536)
Q Consensus 365 ----~h~~~i~~i~~~p~--~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g----~~l~t~s~ 434 (536)
.|...+.+++|+|+ ++.++++++.|+.+.+|+..... ......+.+|...|++++|+|++ ++|++++.
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK--LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC--EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc--eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence 57889999999997 34799999999999888877642 11133444799999999999998 89999999
Q ss_pred CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEE----EcCCCcEEEEcCCccccceeccCCceeeeeee
Q 009380 435 DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFI----GNMTRTVEVISPAQRRSVATLQSPYISAIPCR 510 (536)
Q Consensus 435 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~----gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~ 510 (536)
||.|++||++............. ......+++....+.. +.....+.+|+....+.+..+.+|...+ ..
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~ 311 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLT-----NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV--WS 311 (351)
T ss_dssp TSCEEEEEEEECC--------------------------------------------CCSEEEEEEEEECTTSSCE--EE
T ss_pred CCeEEEEeCCCCcCccccCCccc-----ceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccE--EE
Confidence 99999999986644333211110 0011122233333333 3344567777777778888888765554 46
Q ss_pred EeecCCCCCEEEEEccCCeEEEEecC
Q 009380 511 FHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 511 ~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
++|+| ++.+|++|+.||.|+||+++
T Consensus 312 ~~~s~-~~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 312 VSWNL-TGTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp EEECS-SSCCEEEEETTSCEEEEEEC
T ss_pred EEEcC-CCCEEEEecCCCcEEEEecC
Confidence 88998 56999999999999999974
No 85
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3e-35 Score=288.42 Aligned_cols=257 Identities=14% Similarity=0.164 Sum_probs=206.2
Q ss_pred ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc---cccccccCCceEEEEEEecCCccEE
Q 009380 175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP---ENIARIMPGRITQMKFLPCSDVRMV 251 (536)
Q Consensus 175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~---~~~~~~~~~~I~~v~~~p~~~~~~l 251 (536)
++.++.+|.+.|.++.|+++|+.++ +++.|+.|+|||+.... ...+.+|.+.|++++|+|..++.+|
T Consensus 5 ~~~~~~~H~~~V~~v~~s~~g~~la----------sgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l 74 (316)
T 3bg1_A 5 INTVDTSHEDMIHDAQMDYYGTRLA----------TCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL 74 (316)
T ss_dssp ---------CCEEEEEECGGGCEEE----------EEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCE
T ss_pred eeeecccccCeEEEeeEcCCCCEEE----------EEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEE
Confidence 3456789999999999999999988 45889999999985432 2346789999999999863247899
Q ss_pred EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC--CCCEEEEEECCCeEEEEECCCCe-E---EEeecCCC
Q 009380 252 VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY--CLSKIFTSCYDGLIRLMDAEKEV-F---DLVYSSEY 325 (536)
Q Consensus 252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~dg~I~vwd~~~~~-~---~~~~~~~~ 325 (536)
++|+.|++|+|||+.++. ......+.+|...|.+++|+|+ + .+|++|+.|++|++||+..+. . .....|..
T Consensus 75 ~s~s~D~~v~iWd~~~~~--~~~~~~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~ 151 (316)
T 3bg1_A 75 ASCSYDRKVIIWREENGT--WEKSHEHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQWEVKKINNAHTI 151 (316)
T ss_dssp EEEETTSCEEEECCSSSC--CCEEEEECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS
T ss_pred EEEECCCEEEEEECCCCc--ceEEEEccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCcceeeeeccccC
Confidence 999999999999998632 2456778899999999999998 5 899999999999999998753 2 22346778
Q ss_pred ceeEEEecCCC----------------CCEEEEEECCCeEEEEECCCC---ccceeEeccCCCeEEEEEecCC---CCEE
Q 009380 326 AVFSLSQQPNN----------------VNTLYFGEGQGGLNIWDVRSR---KSATEWLLHEARINTIDFNPRN---PNIM 383 (536)
Q Consensus 326 ~i~~l~~~~~~----------------~~~l~~g~~dg~i~i~d~~~~---~~~~~~~~h~~~i~~i~~~p~~---~~~l 383 (536)
.|.+++|+|+. ..+|++|+.|+.|++||++.. +.+..+.+|...|.+++|+|++ ..+|
T Consensus 152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l 231 (316)
T 3bg1_A 152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI 231 (316)
T ss_dssp CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceE
Confidence 99999999973 258999999999999999765 3566788999999999999975 3689
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380 384 ATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 384 ~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~ 444 (536)
++|+.||+|++||+............+..|...|.+++|+|++++|++++.|++|+||+..
T Consensus 232 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 232 ASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999999999999987321111223345789999999999999999999999999999975
No 86
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-34 Score=287.19 Aligned_cols=259 Identities=17% Similarity=0.184 Sum_probs=213.7
Q ss_pred cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC--CCCEEEEEECC
Q 009380 227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY--CLSKIFTSCYD 304 (536)
Q Consensus 227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~d 304 (536)
..++.+|.+.|++++|+| ++.+|++|+.||.|+||++.... ...+..+.+|...|.+++|+++ + .+|++++.|
T Consensus 4 ~~~~~~h~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~d 78 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDY--YGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYD 78 (379)
T ss_dssp -CCEEECCCCEEEEEECS--SSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETT
T ss_pred cEEecCCcccEEEEEEcC--CCCEEEEEECCCcEEEEecCCCc--ceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccC
Confidence 345689999999999999 99999999999999999997421 5667788999999999999876 6 999999999
Q ss_pred CeEEEEECCCCe---EEEeecCCCceeEEEecCC--CCCEEEEEECCCeEEEEECCCCcc--ceeEeccCCCeEEEEEec
Q 009380 305 GLIRLMDAEKEV---FDLVYSSEYAVFSLSQQPN--NVNTLYFGEGQGGLNIWDVRSRKS--ATEWLLHEARINTIDFNP 377 (536)
Q Consensus 305 g~I~vwd~~~~~---~~~~~~~~~~i~~l~~~~~--~~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~i~~~p 377 (536)
|.|++||+.++. ......|...|.+++|+|+ + .+|++++.||.|++||++++.. ...+..|...|.+++|+|
T Consensus 79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 157 (379)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence 999999999885 3344468899999999998 6 8999999999999999998744 445668999999999999
Q ss_pred C------------CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC---CCeEEEEeCCCcEEEEe
Q 009380 378 R------------NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS---GSSLATTSFDDTIGIWS 442 (536)
Q Consensus 378 ~------------~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~---g~~l~t~s~dg~I~iwd 442 (536)
. ++.+|++++.||.|++||++...........+..|...|.+++|+|+ +.+|++++.||.|++||
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 4 34799999999999999998754211122344579999999999999 89999999999999999
Q ss_pred CCCCCcceEEeccC--CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 443 GVNFENTSMIHHNN--QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 443 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
+.+........... ..... ...++|+|++++|++++.||.|++|++...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDV--LWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSC--EEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCccceeeeeccccCCCc--EEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 98865433222111 12223 344789999999999999999999998743
No 87
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.7e-35 Score=293.35 Aligned_cols=248 Identities=12% Similarity=0.036 Sum_probs=199.6
Q ss_pred ecccccceeeeecCCCCcccccccccccccccccccceEEecccccC---ccccccccCCceEEEEEEecCCccEEEEEe
Q 009380 179 IKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK---PENIARIMPGRITQMKFLPCSDVRMVVAGS 255 (536)
Q Consensus 179 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~---~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~ 255 (536)
...+...|.++.|+|+++.++. ++.||.|+||++... ....+..|.+.|++++|+| ++++|++|+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~----------~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s 74 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVT----------TTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP--KSNRIVTCS 74 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEEC----------CCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT--TTCCEEEEE
T ss_pred EecCCCcEEEEEECCCCCEEEE----------ecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC--CCCEEEEEe
Confidence 4556778999999999998884 467899999998653 4455678999999999999 999999999
Q ss_pred CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe----EEEeec-CCCceeEE
Q 009380 256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV----FDLVYS-SEYAVFSL 330 (536)
Q Consensus 256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~----~~~~~~-~~~~i~~l 330 (536)
.||.|++||+.+.. .......+..|...|.+++|+|++ .+|++++.|+.|++||++++. ...+.. |...|.++
T Consensus 75 ~d~~v~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 75 QDRNAYVYEKRPDG-TWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp TTSSEEEC-------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred CCCeEEEEEcCCCC-ceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence 99999999998732 123677788999999999999998 999999999999999999875 344555 89999999
Q ss_pred EecCCCCCEEEEEECCCeEEEEECCC------------------CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380 331 SQQPNNVNTLYFGEGQGGLNIWDVRS------------------RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTA 392 (536)
Q Consensus 331 ~~~~~~~~~l~~g~~dg~i~i~d~~~------------------~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i 392 (536)
+|+|++ ++|++++.||.|++||++. ++++..+ .|...|.+++|+|++ .+|++++.||.|
T Consensus 153 ~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i 229 (377)
T 3dwl_C 153 DWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSV 229 (377)
T ss_dssp EECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEE
T ss_pred EEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcE
Confidence 999998 8999999999999999853 3445555 899999999999987 699999999999
Q ss_pred EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380 393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~ 444 (536)
++||++++.........+..|...|.+++|+|++++|++++.++.+ +|+..
T Consensus 230 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 230 TIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp C-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 9999998642111145566899999999999999999888766655 77654
No 88
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.7e-34 Score=283.41 Aligned_cols=287 Identities=10% Similarity=0.091 Sum_probs=213.9
Q ss_pred CCceEEEEEEecCCccEEEEEeCCC-------cEEEEECCCCCCCC------CceEEeccCCCCEEEEEEecCCCCEEEE
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLG-------NITFWNLDSQQDED------NGIYLFRTHLGPISGIVTQQYCLSKIFT 300 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg-------~v~iwd~~~~~~~~------~~~~~~~~h~~~V~~l~~~~~~~~~l~s 300 (536)
.-+|++++|+| ++.+|++|+.+. .|++|++....... .....+.+|...|.+++++. +.+++
T Consensus 14 g~PV~sv~fs~--dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~---~~~~~ 88 (365)
T 4h5i_A 14 GYPAYGAKFLN--NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK---GIILV 88 (365)
T ss_dssp SSCEEEEEEEE--TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET---TEEEE
T ss_pred CCCEEEEEEeC--CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC---CEEEE
Confidence 34799999999 999999997543 59999998643210 11235678888898887764 56666
Q ss_pred EE-----------CCCeEEEEECCCCe--EEEe--------ecCCCceeEEEecCCCCCEEEEEE--CCCeEEEEECCCC
Q 009380 301 SC-----------YDGLIRLMDAEKEV--FDLV--------YSSEYAVFSLSQQPNNVNTLYFGE--GQGGLNIWDVRSR 357 (536)
Q Consensus 301 ~s-----------~dg~I~vwd~~~~~--~~~~--------~~~~~~i~~l~~~~~~~~~l~~g~--~dg~i~i~d~~~~ 357 (536)
++ .|+.+++|++.+.. .... ..++..+.+++|+|++ +++++++ .|++|++||+.++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTT
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCC
Confidence 53 57889999986542 1111 1234568899999999 6665544 6899999999999
Q ss_pred ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC-
Q 009380 358 KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD- 436 (536)
Q Consensus 358 ~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg- 436 (536)
+++..+. |...|.+|+|+|++ .++++++. +.+++|+..++.. ........|...|.+++|+|++.++++++.|+
T Consensus 168 ~~~~~~~-~~~~V~~v~fspdg-~~l~s~s~-~~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~ 242 (365)
T 4h5i_A 168 TEKFEIE-TRGEVKDLHFSTDG-KVVAYITG-SSLEVISTVTGSC--IARKTDFDKNWSLSKINFIADDTVLIAASLKKG 242 (365)
T ss_dssp EEEEEEE-CSSCCCEEEECTTS-SEEEEECS-SCEEEEETTTCCE--EEEECCCCTTEEEEEEEEEETTEEEEEEEESSS
T ss_pred cEEEEeC-CCCceEEEEEccCC-ceEEeccc-eeEEEEEeccCcc--eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc
Confidence 9888886 78889999999988 78998885 5577777766431 01122336888999999999999999999887
Q ss_pred ---cEEEEeCCCCCcceEE-eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEe
Q 009380 437 ---TIGIWSGVNFENTSMI-HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFH 512 (536)
Q Consensus 437 ---~I~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~ 512 (536)
.+++|++......... .........+. +++|+|+|++|++|+.|+.|+|||+.+++++.++...|...+ ..++
T Consensus 243 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V-~~v~ 319 (365)
T 4h5i_A 243 KGIVLTKISIKSGNTSVLRSKQVTNRFKGIT--SMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAI-TEVT 319 (365)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEEESSCSCEE--EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCE-EEEE
T ss_pred ceeEEeecccccceecceeeeeecCCCCCeE--eEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCE-EEEE
Confidence 5888988765432221 11111222333 478999999999999999999999999999888644344444 4789
Q ss_pred ecCCCCCEEEEEccCCeEEEEec
Q 009380 513 AHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 513 ~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
|+| ++.+||+|+.|++|+||++
T Consensus 320 fSp-dg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 320 ISP-DSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp ECT-TSCEEEEEETTSEEEEEEC
T ss_pred ECC-CCCEEEEEeCCCeEEEEEc
Confidence 999 6799999999999999997
No 89
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8.8e-35 Score=290.97 Aligned_cols=295 Identities=9% Similarity=0.023 Sum_probs=220.5
Q ss_pred cceeeeecCCCCcccccccccccccccccccceEEecccccCccc-----------cccccCCceEEEEEEecCCccEEE
Q 009380 184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-----------IARIMPGRITQMKFLPCSDVRMVV 252 (536)
Q Consensus 184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-----------~~~~~~~~I~~v~~~p~~~~~~l~ 252 (536)
-.|.++.|+||+++|++...+.. +.+.++.|+||++...... .+..|.+.|.+++++ ++.++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~---~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~----~~~~~ 87 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEG---NNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS----KGIIL 87 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSS---SSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE----TTEEE
T ss_pred CCEEEEEEeCCCcEEEEECCCcc---ccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC----CCEEE
Confidence 35899999999999996521111 1234568999997544321 234567788888765 45666
Q ss_pred EE-----------eCCCcEEEEECCCCCCCCCceEE-----eccCCCCEEEEEEecCCCCEEEEE--ECCCeEEEEECCC
Q 009380 253 AG-----------SKLGNITFWNLDSQQDEDNGIYL-----FRTHLGPISGIVTQQYCLSKIFTS--CYDGLIRLMDAEK 314 (536)
Q Consensus 253 tg-----------~~dg~v~iwd~~~~~~~~~~~~~-----~~~h~~~V~~l~~~~~~~~~l~s~--s~dg~I~vwd~~~ 314 (536)
+| +.|+++++|++............ ...+...+.+++|+||| ++|+++ +.|++|++||+.+
T Consensus 88 ~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~ 166 (365)
T 4h5i_A 88 VGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSD 166 (365)
T ss_dssp EECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTT
T ss_pred EEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCC
Confidence 65 45788999998764221111111 12345568999999999 877654 4789999999999
Q ss_pred CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee--EeccCCCeEEEEEecCCCCEEEEEeCCC--
Q 009380 315 EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE--WLLHEARINTIDFNPRNPNIMATSSTDG-- 390 (536)
Q Consensus 315 ~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~--~~~h~~~i~~i~~~p~~~~~l~s~s~dg-- 390 (536)
+.......|...|.+++|+|++ .++++++.+ .+.+|+..+++.+.. ...|...|.+++|+|++ .++++++.|+
T Consensus 167 ~~~~~~~~~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~ 243 (365)
T 4h5i_A 167 LTEKFEIETRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADD-TVLIAASLKKGK 243 (365)
T ss_dssp TEEEEEEECSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT-EEEEEEEESSSC
T ss_pred CcEEEEeCCCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC-CEEEEEecCCcc
Confidence 9988888899999999999998 788888755 677888887776543 34688899999999988 6888888777
Q ss_pred --cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEE
Q 009380 391 --TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAI 468 (536)
Q Consensus 391 --~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (536)
.+++||+............+.+|...|++++|+|+|++|++|+.|++|+|||+.+++++..+.. .+...++ .++
T Consensus 244 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~--gH~~~V~--~v~ 319 (365)
T 4h5i_A 244 GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ--AHSFAIT--EVT 319 (365)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT--SSSSCEE--EEE
T ss_pred eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC--cccCCEE--EEE
Confidence 5888988764311112234557899999999999999999999999999999999888776521 1122334 488
Q ss_pred EcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 469 WGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 469 ~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
|+|||++|++|+.|++|+||++...
T Consensus 320 fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 320 ISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999999643
No 90
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=9e-34 Score=291.11 Aligned_cols=287 Identities=14% Similarity=0.178 Sum_probs=223.9
Q ss_pred ccccceeeeecCCCCcccccccccccccccccccceEEecccccCc------------cccccccC------------Cc
Q 009380 181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP------------ENIARIMP------------GR 236 (536)
Q Consensus 181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~------------~~~~~~~~------------~~ 236 (536)
.|.+.|.++.|+|+|..++. ++.||.|+||++.... ....+.|. +.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~----------g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLAT----------GDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEE----------EETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred cccCcEEEEEECCCCCEEEE----------EcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCc
Confidence 46789999999999999984 5788999999986443 33456787 88
Q ss_pred eEEEEEEecCCc--cEEEEEeCCCcEEEEECCCCCCC----------C-------------------------CceEE-e
Q 009380 237 ITQMKFLPCSDV--RMVVAGSKLGNITFWNLDSQQDE----------D-------------------------NGIYL-F 278 (536)
Q Consensus 237 I~~v~~~p~~~~--~~l~tg~~dg~v~iwd~~~~~~~----------~-------------------------~~~~~-~ 278 (536)
|++++|+| ++ .+|++|+.||.|++|++...... + ..... .
T Consensus 96 V~~l~~~~--~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 96 INKIRWLP--QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCEEEECC--CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred eEEEEEcC--CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 99999999 76 79999999999999998752100 0 00112 3
Q ss_pred ccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-CeEEE--------eecCCCceeEEEecCCCCCEEEEEECCCeE
Q 009380 279 RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-EVFDL--------VYSSEYAVFSLSQQPNNVNTLYFGEGQGGL 349 (536)
Q Consensus 279 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-~~~~~--------~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i 349 (536)
.+|...|.+++|+|++ .+|++| .|+.|++||+.+ +.... ...|...|.+++|+|++.++|++|+.||.|
T Consensus 174 ~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 174 NAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp SCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred cCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 6899999999999998 999998 799999999994 43333 336889999999999987899999999999
Q ss_pred EEEECCCCcc----ceeEeccCC------------CeEEEEEecCCCCEEEEEeCCCcEEEEeCCC-CCCCCCCcceeec
Q 009380 350 NIWDVRSRKS----ATEWLLHEA------------RINTIDFNPRNPNIMATSSTDGTACIWDLRS-MATDKPEPMKVLS 412 (536)
Q Consensus 350 ~i~d~~~~~~----~~~~~~h~~------------~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~-~~~~~~~~~~~~~ 412 (536)
++||+++++. +..+..|.. .|.+++|+|++ .+|++++. +.|++||++. +. ....+..
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~----~~~~~~~ 325 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENR----PVETYQV 325 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSS----CSCCEES
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCcc----ccceeec
Confidence 9999999886 678888876 89999999987 78999998 9999999987 32 3334445
Q ss_pred ccCc---------------eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC---------------------
Q 009380 413 HKRA---------------VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN--------------------- 456 (536)
Q Consensus 413 ~~~~---------------v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~--------------------- 456 (536)
|... +..++|+|++.+|++++.||.|++||+.+++......+..
T Consensus 326 ~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (447)
T 3dw8_B 326 HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKK 405 (447)
T ss_dssp CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCT
T ss_pred cccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccc
Confidence 5432 3349999999999999999999999998876653222210
Q ss_pred --------CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380 457 --------QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 457 --------~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
.... .++.++|+|++.+|++++.++ +++|..
T Consensus 406 ~~~~~~~~~~~~--~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 406 DEISVDSLDFNK--KILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TCEEGGGCCTTS--CCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccccccCC--ceeEEEECCCCCEEEEEecce-eeeecc
Confidence 0111 234488999999999998775 777764
No 91
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=280.39 Aligned_cols=293 Identities=13% Similarity=0.117 Sum_probs=235.1
Q ss_pred CccccccccCCceEEEEEEecCC---ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEE
Q 009380 225 KPENIARIMPGRITQMKFLPCSD---VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTS 301 (536)
Q Consensus 225 ~~~~~~~~~~~~I~~v~~~p~~~---~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~ 301 (536)
.+....+.|.+.|++++|+| + |.+|++|+.||.|+||++.+.. ......+.+|...|.+++|+|++ .+|+++
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~--~~~~g~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~ 104 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSP--PTLPGNFLIAGSWANDVRCWEVQDSG--QTIPKAQQMHTGPVLDVCWSDDG-SKVFTA 104 (368)
T ss_dssp CCEECSSCCSSCEEEEEECC--TTSSSEEEEEEETTSEEEEEEECTTS--CEEEEEEEECSSCEEEEEECTTS-SEEEEE
T ss_pred ceeEeccCCCCceEEEEEcC--CCCCceEEEEECCCCcEEEEEcCCCC--ceeEEEeccccCCEEEEEECcCC-CEEEEE
Confidence 34456788999999999999 7 6999999999999999998631 33347888999999999999998 999999
Q ss_pred ECCCeEEEEECCCCeEEEeecCCCceeEEEe--cCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCC
Q 009380 302 CYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQ--QPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRN 379 (536)
Q Consensus 302 s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~--~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~ 379 (536)
+.||.|++||+.++.......|...|.+++| ++++ ++|++++.||.|++||+++++.+..+..+. .+.++.+.+
T Consensus 105 ~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~-- 180 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY-- 180 (368)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--
T ss_pred cCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--
Confidence 9999999999999998888899999999999 8887 789999999999999999999998888654 677777775
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--cccCceeEEEEccCCCe----EEEEeCCCcEEEEeCCCCC---cce
Q 009380 380 PNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SHKRAVHSAYFSPSGSS----LATTSFDDTIGIWSGVNFE---NTS 450 (536)
Q Consensus 380 ~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~~~~v~~l~~sp~g~~----l~t~s~dg~I~iwd~~~~~---~~~ 450 (536)
..+++++.++.+++||++... ...... .+...+.++.+.++... +++++.|+.|++||+.... ...
T Consensus 181 -~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 181 -PMAVVATAERGLIVYQLENQP----SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF 255 (368)
T ss_dssp -TEEEEEEGGGCEEEEECSSSC----EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred -CeeEEEeCCCcEEEEEecccc----chhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence 477888889999999998743 122211 34456666777665554 9999999999999998773 344
Q ss_pred EEeccCCC-------CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEE
Q 009380 451 MIHHNNQT-------GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG 523 (536)
Q Consensus 451 ~~~~~~~~-------~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las 523 (536)
.+...... .....+..++|+|++++|++|+.||.|++||+.+++.+..+..|...+ ..++|+| ++.+|++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~~~~s~-~g~~l~~ 332 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPI--SACCFNH-NGNIFAY 332 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCE--EEEEECT-TSSCEEE
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCc--eEEEECC-CCCeEEE
Confidence 44321110 000023447899999999999999999999999999999888765444 4688999 6799999
Q ss_pred EccCCeEEEEe
Q 009380 524 ATGGGQVYVWT 534 (536)
Q Consensus 524 gs~Dg~v~iW~ 534 (536)
|+.|+..+.|+
T Consensus 333 ~s~d~~~~~~~ 343 (368)
T 3mmy_A 333 ASSYDWSKGHE 343 (368)
T ss_dssp EECCCSTTCGG
T ss_pred Eeccccccccc
Confidence 99988655544
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.3e-34 Score=283.88 Aligned_cols=252 Identities=15% Similarity=0.179 Sum_probs=199.3
Q ss_pred cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC--CCCEEEEEECCCe
Q 009380 229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY--CLSKIFTSCYDGL 306 (536)
Q Consensus 229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~dg~ 306 (536)
+..+|.+.|++++|+| ++++|++|+.|++|+|||+.++. ...+..+.+|.+.|.+++|++. + .+|++|+.|++
T Consensus 8 ~~~~H~~~V~~v~~s~--~g~~lasgs~D~~v~lwd~~~~~--~~~~~~l~gH~~~V~~v~~~~~~~~-~~l~s~s~D~~ 82 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDY--YGTRLATCSSDRSVKIFDVRNGG--QILIADLRGHEGPVWQVAWAHPMYG-NILASCSYDRK 82 (316)
T ss_dssp ------CCEEEEEECG--GGCEEEEEETTTEEEEEEEETTE--EEEEEEEECCSSCEEEEEECCGGGS-SCEEEEETTSC
T ss_pred ecccccCeEEEeeEcC--CCCEEEEEeCCCeEEEEEecCCC--cEEEEEEcCCCccEEEEEeCCCCCC-CEEEEEECCCE
Confidence 4578999999999999 99999999999999999998621 1346788999999999999853 5 89999999999
Q ss_pred EEEEECCCCe---EEEeecCCCceeEEEecCCC-CCEEEEEECCCeEEEEECCCCcc---ceeEeccCCCeEEEEEecCC
Q 009380 307 IRLMDAEKEV---FDLVYSSEYAVFSLSQQPNN-VNTLYFGEGQGGLNIWDVRSRKS---ATEWLLHEARINTIDFNPRN 379 (536)
Q Consensus 307 I~vwd~~~~~---~~~~~~~~~~i~~l~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~h~~~i~~i~~~p~~ 379 (536)
|++||++++. ...+.+|...|.+++|+|++ ..+|++|+.||.|++||++.+.. ...+.+|...|.+++|+|+.
T Consensus 83 v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 83 VIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp EEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred EEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence 9999998863 23445688999999999983 37899999999999999987642 34556899999999999973
Q ss_pred ----------------CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCC----CeEEEEeCCCcEE
Q 009380 380 ----------------PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSG----SSLATTSFDDTIG 439 (536)
Q Consensus 380 ----------------~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g----~~l~t~s~dg~I~ 439 (536)
..+|++|+.|+.|++||++.... ......+.+|...|.+++|+|++ .+|++++.|++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~ 241 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ-WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC-EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCc-cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence 25899999999999999975310 01223445899999999999986 7899999999999
Q ss_pred EEeCCCCC----cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380 440 IWSGVNFE----NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA 491 (536)
Q Consensus 440 iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~ 491 (536)
|||+.+.. ....+... ... +..++|+|++.+|++++.|+.|++|+..
T Consensus 242 iw~~~~~~~~~~~~~~~~~~---~~~--v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 242 IWTCDDASSNTWSPKLLHKF---NDV--VWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEECSSTTCCCCBCCEEEEC---SSC--EEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEccCccccchhhhhhhcC---CCc--EEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99987632 11222211 122 3448899999999999999999999975
No 93
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.5e-33 Score=285.67 Aligned_cols=279 Identities=16% Similarity=0.178 Sum_probs=227.7
Q ss_pred ccccccCCce-EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 228 NIARIMPGRI-TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 228 ~~~~~~~~~I-~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
..+.+|.+.| +++.+ ++++|++|+.||.|++||+.+ ...+..+.+|.+.|.+++|++++ +|++|+.||+
T Consensus 115 ~~l~~h~~~v~~~~~~----~~~~l~sgs~dg~i~vwd~~~----~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~ 184 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF----EDNYVITGADDKMIRVYDSIN----KKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRT 184 (464)
T ss_dssp EEEECCSSSCEEEEEE----ETTEEEEEETTSCEEEEETTT----TEEEEEECCCSSCEEEEEECSTT--EEEEEETTSC
T ss_pred EEEcCCCCCcEEEEEE----CCCEEEEEcCCCcEEEEECCC----CcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCC
Confidence 4567888775 55555 457999999999999999987 77889999999999999999875 9999999999
Q ss_pred EEEEECCCCeEEEee-cCCCceeEEEecC--CCCCEEEEEECCCeEEEEECCCCcc-----------------------c
Q 009380 307 IRLMDAEKEVFDLVY-SSEYAVFSLSQQP--NNVNTLYFGEGQGGLNIWDVRSRKS-----------------------A 360 (536)
Q Consensus 307 I~vwd~~~~~~~~~~-~~~~~i~~l~~~~--~~~~~l~~g~~dg~i~i~d~~~~~~-----------------------~ 360 (536)
|++||++++.....+ .|...|.+++|++ ++ .++++|+.||.|++||++++.. +
T Consensus 185 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred EEEEECCCCcEEEEECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 999999998766555 5889999999985 44 7999999999999999987653 3
Q ss_pred eeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEE
Q 009380 361 TEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440 (536)
Q Consensus 361 ~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~i 440 (536)
..+.+|...|.++..+ + .++++|+.||.|++||+++++ ....+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 264 ~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~v 336 (464)
T 3v7d_B 264 GVLRGHMASVRTVSGH--G-NIVVSGSYDNTLIVWDVAQMK----CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336 (464)
T ss_dssp EEECCCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred EEccCccceEEEEcCC--C-CEEEEEeCCCeEEEEECCCCc----EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 4566888889888543 4 699999999999999999853 44555689999999999999999999999999999
Q ss_pred EeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCE
Q 009380 441 WSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGT 520 (536)
Q Consensus 441 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~ 520 (536)
||+.+++.+..+.... ..+.. +.|+ +.+|++|+.||.|++||+.++.....+...+ .+ ..+.++| ++.+
T Consensus 337 wd~~~~~~~~~~~~h~---~~v~~--~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~--~~-~~~~~~~-~~~~ 405 (464)
T 3v7d_B 337 WDLENGELMYTLQGHT---ALVGL--LRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTN--LS-AITTFYV-SDNI 405 (464)
T ss_dssp EETTTTEEEEEECCCS---SCEEE--EEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTT--CC-CEEEEEE-CSSE
T ss_pred EECCCCcEEEEEeCCC---CcEEE--EEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCC--Cc-cEEEEEe-CCCE
Confidence 9999988777774322 23333 4455 6799999999999999999887665554222 22 3456666 5688
Q ss_pred EEEEccCCeEEEEecC
Q 009380 521 LAGATGGGQVYVWTSD 536 (536)
Q Consensus 521 lasgs~Dg~v~iW~~d 536 (536)
|++|+ ||.|+|||++
T Consensus 406 l~~~~-dg~i~iwd~~ 420 (464)
T 3v7d_B 406 LVSGS-ENQFNIYNLR 420 (464)
T ss_dssp EEEEE-TTEEEEEETT
T ss_pred EEEec-CCeEEEEECC
Confidence 99888 8999999974
No 94
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.8e-33 Score=275.05 Aligned_cols=283 Identities=14% Similarity=0.126 Sum_probs=233.0
Q ss_pred eecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc----cccccccCCceEEEEEEecCCcc-EEE
Q 009380 178 VIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP----ENIARIMPGRITQMKFLPCSDVR-MVV 252 (536)
Q Consensus 178 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~----~~~~~~~~~~I~~v~~~p~~~~~-~l~ 252 (536)
+..+|.+.|.++.|+|++..++. ++.||.|.+|++.... ......|...|++++|+| ++. +|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~----------~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~ 73 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLI----------TSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID--NTDLQIY 73 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEE----------EETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE--SSSEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEE----------EcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC--CCCcEEE
Confidence 45689999999999999998884 4788999999986554 455568899999999999 999 999
Q ss_pred EEeCCCcEEEEEC-CCCCCCCCceEEecc--CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC---------CeEEEe
Q 009380 253 AGSKLGNITFWNL-DSQQDEDNGIYLFRT--HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK---------EVFDLV 320 (536)
Q Consensus 253 tg~~dg~v~iwd~-~~~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~---------~~~~~~ 320 (536)
+|+.||.|++|++ .. .....+.+ |...|.+++|+| + .+|++++.|+.|++||+.+ +.....
T Consensus 74 ~~~~dg~i~~wd~~~~-----~~~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 146 (342)
T 1yfq_A 74 VGTVQGEILKVDLIGS-----PSFQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN 146 (342)
T ss_dssp EEETTSCEEEECSSSS-----SSEEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred EEcCCCeEEEEEeccC-----CceEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeE
Confidence 9999999999999 75 34577888 999999999999 6 9999999999999999987 665556
Q ss_pred ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC-Ccc--ceeEeccCCCeEEEEEec-CCCCEEEEEeCCCcEEEEe
Q 009380 321 YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS-RKS--ATEWLLHEARINTIDFNP-RNPNIMATSSTDGTACIWD 396 (536)
Q Consensus 321 ~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~--~~~~~~h~~~i~~i~~~p-~~~~~l~s~s~dg~i~iwd 396 (536)
+.+...|.+++|++++ +++++.+|.|++||+++ +.. ......|...|.+++|+| ++ .+|++++.||.|++||
T Consensus 147 ~~~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 147 TKVKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEF 222 (342)
T ss_dssp SSSCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEE
T ss_pred EeeCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEE
Confidence 6688999999999864 99999999999999998 553 234446888999999999 87 6999999999999999
Q ss_pred CCCC--CCCCCCcceeecccC---------ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee
Q 009380 397 LRSM--ATDKPEPMKVLSHKR---------AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF 465 (536)
Q Consensus 397 l~~~--~~~~~~~~~~~~~~~---------~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 465 (536)
++.. .........+..|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+... ....+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~- 299 (342)
T 1yfq_A 223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF--NEDSVVK- 299 (342)
T ss_dssp CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC--SSSEEEE-
T ss_pred EcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc--cCCCceE-
Confidence 9875 111123444455644 9999999999999999999999999999988876665321 0234444
Q ss_pred EEEEcCCCCEEEEEcCCCc-EEEEc
Q 009380 466 RAIWGWDDSCVFIGNMTRT-VEVIS 489 (536)
Q Consensus 466 ~~~~s~~g~~l~~gs~dg~-I~v~d 489 (536)
++ +++.+|++++.||. .+.|.
T Consensus 300 -~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 300 -IA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp -EE--ECSSEEEEEEECTHHHHCSS
T ss_pred -ec--CCCCeEEEEecCCccccccc
Confidence 33 89999999999997 44443
No 95
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=289.82 Aligned_cols=293 Identities=14% Similarity=0.128 Sum_probs=228.1
Q ss_pred ecccccceeeeecCC-CCcccccccccccccccccccceEEeccccc---Cc---cccccccCCceEEEEEEecCCccEE
Q 009380 179 IKDEFNGFKTCKDEG-LGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL---KP---ENIARIMPGRITQMKFLPCSDVRMV 251 (536)
Q Consensus 179 ~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~---~~---~~~~~~~~~~I~~v~~~p~~~~~~l 251 (536)
..+|.+.|.++.|+| ++..++ +++.||.|+||++.. .. ......|.+.|++++|+| ++.+|
T Consensus 59 ~~~h~~~V~~~~~s~~~~~~l~----------s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l 126 (437)
T 3gre_A 59 MENEPNSITSSAVSPGETPYLI----------TGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP--NFDAF 126 (437)
T ss_dssp CTTTTSCEEEEEEECSSSCEEE----------EEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT--TSSEE
T ss_pred ccCCCCceEEEEECCCCCCEEE----------EecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC--CCCEE
Confidence 388999999999999 999888 457899999999854 21 122225899999999999 99999
Q ss_pred EEEeCCCcEEEEECCCCCCCCCceEEec----------c--CCCCEEEEE--EecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380 252 VAGSKLGNITFWNLDSQQDEDNGIYLFR----------T--HLGPISGIV--TQQYCLSKIFTSCYDGLIRLMDAEKEVF 317 (536)
Q Consensus 252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~----------~--h~~~V~~l~--~~~~~~~~l~s~s~dg~I~vwd~~~~~~ 317 (536)
++|+.||.|++||+..... +.....+. . +...+.++. +++++ .+|++++.||.|++||++++..
T Consensus 127 ~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~ 204 (437)
T 3gre_A 127 AVSSKDGQIIVLKVNHYQQ-ESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLER 204 (437)
T ss_dssp EEEETTSEEEEEEEEEEEE-TTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCE
T ss_pred EEEeCCCEEEEEEeccccC-CceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCee
Confidence 9999999999999952100 22332222 2 566677777 45677 8999999999999999998876
Q ss_pred EEee-c--CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecC---CCCEEEEEeCCC
Q 009380 318 DLVY-S--SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPR---NPNIMATSSTDG 390 (536)
Q Consensus 318 ~~~~-~--~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~---~~~~l~s~s~dg 390 (536)
...+ . |...|.+++|+|++ ++|++|+.||.|++||+++++++..+. .|...|.+++|+|. +..+|++|+.||
T Consensus 205 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg 283 (437)
T 3gre_A 205 LQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT 283 (437)
T ss_dssp EEEEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred eEEEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCC
Confidence 5554 3 67899999999997 899999999999999999999888886 78889999977753 236999999999
Q ss_pred cEEEEeCCCCCCCC--------CCcc------------eeec--ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc
Q 009380 391 TACIWDLRSMATDK--------PEPM------------KVLS--HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN 448 (536)
Q Consensus 391 ~i~iwdl~~~~~~~--------~~~~------------~~~~--~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~ 448 (536)
.|++||+++++... .... .+.+ |...|++++|+ ++.+|++++.|+.|++||+.+++.
T Consensus 284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence 99999998754100 0000 0112 77889999999 778999999999999999999887
Q ss_pred ceEEeccC----------------------------------CCCceeeeeEEEEcCC--CCEEEEEcCCCcEEEEc
Q 009380 449 TSMIHHNN----------------------------------QTGRWISSFRAIWGWD--DSCVFIGNMTRTVEVIS 489 (536)
Q Consensus 449 ~~~~~~~~----------------------------------~~~~~~~~~~~~~s~~--g~~l~~gs~dg~I~v~d 489 (536)
...+.... .....+.. +.|+++ +.+|++|+.||.|+||+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~--i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 363 SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINS--ISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEE--EEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceee--EeeeccCCceEEEEEcCCceEEEeC
Confidence 77664310 01222333 556666 77999999999999995
No 96
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.9e-33 Score=285.12 Aligned_cols=284 Identities=14% Similarity=0.146 Sum_probs=224.2
Q ss_pred eEEEEEEecCCcc-EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec-CCCCEEEEEECCCeEEEEECCC
Q 009380 237 ITQMKFLPCSDVR-MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ-YCLSKIFTSCYDGLIRLMDAEK 314 (536)
Q Consensus 237 I~~v~~~p~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~~l~s~s~dg~I~vwd~~~ 314 (536)
...++++| +.. ++++|+.+|.|+||++.........+..+.+|.+.|.+++|+| ++ .+|++|+.||.|++||+.+
T Consensus 37 ~~~~~~~~--~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 37 SGFCAVNP--KFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SCSEEECS--SEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCT
T ss_pred CCcEEECC--CeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccC
Confidence 34578888 554 3445788999999999753221245667889999999999999 66 9999999999999999987
Q ss_pred Ce--------EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE--eccCCCeEEEEEecCCCCEEE
Q 009380 315 EV--------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW--LLHEARINTIDFNPRNPNIMA 384 (536)
Q Consensus 315 ~~--------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~h~~~i~~i~~~p~~~~~l~ 384 (536)
+. ...+.+|...|.+++|+|++.++|++++.||.|++||+++++.+..+ ..|...|.+++|+|++ .+|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 192 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG-ALIC 192 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS-SCEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC-CEEE
Confidence 62 34556789999999999998679999999999999999999999888 7899999999999977 7899
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCccee-ecccCc-eeEEEEccCCCeEEEE---eCCCcEEEEeCCCCCcc-eEEeccCCC
Q 009380 385 TSSTDGTACIWDLRSMATDKPEPMKV-LSHKRA-VHSAYFSPSGSSLATT---SFDDTIGIWSGVNFENT-SMIHHNNQT 458 (536)
Q Consensus 385 s~s~dg~i~iwdl~~~~~~~~~~~~~-~~~~~~-v~~l~~sp~g~~l~t~---s~dg~I~iwd~~~~~~~-~~~~~~~~~ 458 (536)
+++.||.|++||+++++ ....+ ..|... +.++.|+|++.+|+++ +.|+.|++||+++.+.. ........
T Consensus 193 ~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~- 267 (402)
T 2aq5_A 193 TSCRDKRVRVIEPRKGT----VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS- 267 (402)
T ss_dssp EEETTSEEEEEETTTTE----EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCC-
T ss_pred EEecCCcEEEEeCCCCc----eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCC-
Confidence 99999999999999853 33444 467665 8999999999999999 78999999999987653 33322111
Q ss_pred CceeeeeEEEEcCCCCEEE-EEcCCCcEEEEcCCcccc-ceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 459 GRWISSFRAIWGWDDSCVF-IGNMTRTVEVISPAQRRS-VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 459 ~~~~~~~~~~~s~~g~~l~-~gs~dg~I~v~d~~~~~~-~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
.. ...+.|+|++.+|+ +|+.|+.|++|++.+++. +..+..+........++|+| ++.+++ +.|+.+++|++
T Consensus 268 -~~--v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp-~~~~~~--s~~~~~~~~~l 340 (402)
T 2aq5_A 268 -SG--VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP-KRGLEV--NKCEIARFYKL 340 (402)
T ss_dssp -SS--CEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC-GGGSCG--GGTEEEEEEEE
T ss_pred -Cc--eeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec-ccccce--ecceeEEEEEc
Confidence 11 33478999999986 566799999999998874 55554432222235788999 456665 45679999986
No 97
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.4e-32 Score=279.74 Aligned_cols=278 Identities=16% Similarity=0.251 Sum_probs=232.0
Q ss_pred ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC
Q 009380 226 PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG 305 (536)
Q Consensus 226 ~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg 305 (536)
....+.+|.+.|.. ++++ ++++|++|+.||.|++||+.+ +..+..+.+|...|.++.|+ + ++|++|+.||
T Consensus 110 ~~~~l~~h~~~v~~-~~~~--~g~~l~sg~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~--~-~~l~s~~~dg 179 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQF--CGNRIVSGSDDNTLKVWSAVT----GKCLRTLVGHTGGVWSSQMR--D-NIIISGSTDR 179 (445)
T ss_dssp CCEEEECSTTSCEE-EEEE--ETTEEEEEETTSCEEEEETTT----CCEEEECCCCSSCEEEEEEE--T-TEEEEEETTS
T ss_pred eeEEecccCCCcEE-EEEE--cCCEEEEEECCCcEEEEECCC----CcEEEEEcCCCCCEEEEEec--C-CEEEEEeCCC
Confidence 34556889887643 3555 678999999999999999987 77889999999999999998 3 7999999999
Q ss_pred eEEEEECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEE
Q 009380 306 LIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMA 384 (536)
Q Consensus 306 ~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~ 384 (536)
+|++||+.++..... ..|...|.+++|++ +.+++|+.||.|++||+.+++.+..+.+|...|.+++|. + .+++
T Consensus 180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~ 253 (445)
T 2ovr_B 180 TLKVWNAETGECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--G-RRVV 253 (445)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC--S-SCEE
T ss_pred eEEEEECCcCcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC--C-CEEE
Confidence 999999998876544 46889999999963 589999999999999999999999999999999999993 4 6899
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeee
Q 009380 385 TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISS 464 (536)
Q Consensus 385 s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 464 (536)
+|+.||.|++||+++++ ....+.+|...|.++.| ++.++++++.|+.|++||+.+++....+.... ..+..
T Consensus 254 ~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~v~~ 324 (445)
T 2ovr_B 254 SGAYDFMVKVWDPETET----CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ---SLTSG 324 (445)
T ss_dssp EEETTSCEEEEEGGGTE----EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCC---SCEEE
T ss_pred EEcCCCEEEEEECCCCc----EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc---ccEEE
Confidence 99999999999998853 44455579999999999 78899999999999999999988777664222 12222
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC--ceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 465 FRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP--YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 465 ~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~--~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
+.+++.+|++|+.||.|++||+.+++.+..+..+ |...+ ..+.|+ +.+|++|+.||.|+|||++
T Consensus 325 ----~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v-~~~~~~---~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 325 ----MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV-TCLQFN---KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp ----EEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCE-EEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred ----EEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCE-EEEEEC---CCEEEEEeCCCeEEEEECC
Confidence 3346779999999999999999999988888762 33333 456775 4899999999999999974
No 98
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.2e-32 Score=275.74 Aligned_cols=270 Identities=13% Similarity=0.222 Sum_probs=223.7
Q ss_pred cccceEEecccccCcc-ccc--cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEE
Q 009380 212 EVGSCVDIGSLTLKPE-NIA--RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGI 288 (536)
Q Consensus 212 ~~dg~v~lw~~~~~~~-~~~--~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l 288 (536)
+.|++|+|||...... ... ..|.+.|++|+|+| +|.+|++|+.||.|+|||+.+ +..+..+.+|...|.++
T Consensus 122 gld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp--dg~~lasgs~Dg~v~iWd~~~----~~~~~~~~~h~~~v~~~ 195 (420)
T 4gga_A 122 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLAVGTSSAEVQLWDVQQ----QKRLRNMTSHSARVGSL 195 (420)
T ss_dssp EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEEEEETTSCEEEEETTT----TEEEEEECCCSSCEEEE
T ss_pred EeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC--CCCEEEEEECCCeEEEEEcCC----CcEEEEEeCCCCceEEE
Confidence 4688999999865432 222 45678899999999 999999999999999999998 78889999999999998
Q ss_pred EEecCCCCEEEEEECCCeEEEEECCCC--eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc----cee
Q 009380 289 VTQQYCLSKIFTSCYDGLIRLMDAEKE--VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS----ATE 362 (536)
Q Consensus 289 ~~~~~~~~~l~s~s~dg~I~vwd~~~~--~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~----~~~ 362 (536)
.|++ .+|++|+.|+.+++||.... ....+..|...+..+.|+|++ .++++++.||.|++||..+++. +..
T Consensus 196 s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~ 271 (420)
T 4gga_A 196 SWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQT 271 (420)
T ss_dssp EEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEE
T ss_pred eeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeee
Confidence 8864 78999999999999998864 334556789999999999998 8999999999999999987753 456
Q ss_pred EeccCCCeEEEEEecCCCCEEEEE--eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe--CCCcE
Q 009380 363 WLLHEARINTIDFNPRNPNIMATS--STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS--FDDTI 438 (536)
Q Consensus 363 ~~~h~~~i~~i~~~p~~~~~l~s~--s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s--~dg~I 438 (536)
...|...|.+++|+|.+.++++++ +.|++|++||++++ .......+...+.++.|+|++..+++++ .|+.|
T Consensus 272 ~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-----~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I 346 (420)
T 4gga_A 272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-----ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQL 346 (420)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-----EEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCE
T ss_pred ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-----ccceeeccccceeeeeecCCCCeEEEEEecCCCEE
Confidence 678999999999999988888775 47999999999985 3445556677899999999999888765 78999
Q ss_pred EEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccC
Q 009380 439 GIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS 501 (536)
Q Consensus 439 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~ 501 (536)
+|||+.+++++..+..+ ...+ ..++|+|+|.+|++|+.|++|+|||+....+....+.
T Consensus 347 ~iwd~~~~~~v~~l~gH---~~~V--~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~ 404 (420)
T 4gga_A 347 VIWKYPTMAKVAELKGH---TSRV--LSLTMSPDGATVASAAADETLRLWRCFELDPARRRER 404 (420)
T ss_dssp EEEETTTCCEEEEECCC---SSCE--EEEEECTTSSCEEEEETTTEEEEECCSCSSCC-----
T ss_pred EEEECCCCcEEEEEcCC---CCCE--EEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhh
Confidence 99999999888877422 1223 3478999999999999999999999987766655543
No 99
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.2e-32 Score=280.42 Aligned_cols=271 Identities=15% Similarity=0.244 Sum_probs=226.2
Q ss_pred cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM 310 (536)
Q Consensus 231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw 310 (536)
..|...|+++.| ++.+|++|+.||.|++||+.+ ...+..+.+|...|.+++| ++ ++|++|+.||.|++|
T Consensus 130 ~~~~~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vw 198 (435)
T 1p22_A 130 SETSKGVYCLQY----DDQKIVSGLRDNTIKIWDKNT----LECKRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVW 198 (435)
T ss_dssp CSSCCCEEEEEC----CSSEEEEEESSSCEEEEESSS----CCEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEE
T ss_pred cCCCCcEEEEEE----CCCEEEEEeCCCeEEEEeCCC----CeEEEEEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEE
Confidence 456677988877 678999999999999999987 7788899999999999999 55 899999999999999
Q ss_pred ECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccc---eeEeccCCCeEEEEEecCCCCEEEEE
Q 009380 311 DAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA---TEWLLHEARINTIDFNPRNPNIMATS 386 (536)
Q Consensus 311 d~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~---~~~~~h~~~i~~i~~~p~~~~~l~s~ 386 (536)
|+.++..... ..|...|.+++|++ +.+++|+.||.|++||++++..+ ..+.+|...|.+++|. + .+|++|
T Consensus 199 d~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~ 272 (435)
T 1p22_A 199 DVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--D-KYIVSA 272 (435)
T ss_dssp ESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--T-TEEEEE
T ss_pred ECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--C-CEEEEE
Confidence 9998866544 46889999999974 58999999999999999988765 5677899999999994 4 699999
Q ss_pred eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeE
Q 009380 387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFR 466 (536)
Q Consensus 387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 466 (536)
+.||.|++||+++++ ....+.+|...|.++.|+ +.+|++++.||.|++||+++++.+..+.... ..+..
T Consensus 273 ~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~---~~v~~-- 341 (435)
T 1p22_A 273 SGDRTIKVWNTSTCE----FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE---ELVRC-- 341 (435)
T ss_dssp ETTSEEEEEETTTCC----EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS---SCEEE--
T ss_pred eCCCeEEEEECCcCc----EEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc---CcEEE--
Confidence 999999999999853 455566899999999994 7899999999999999999988877774322 22333
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEcCCccc---------cceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 467 AIWGWDDSCVFIGNMTRTVEVISPAQRR---------SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 467 ~~~s~~g~~l~~gs~dg~I~v~d~~~~~---------~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
+.| ++.+|++|+.||.|++||+.++. .+..+.+|...+. .+.| ++.+|++|+.||.|+|||++
T Consensus 342 ~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~---~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 342 IRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF--RLQF---DEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp EEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCC--CEEE---CSSCEEECCSSSEEEEEC--
T ss_pred EEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeE--EEEe---CCCEEEEEeCCCEEEEEECC
Confidence 444 78899999999999999998776 6677776655444 4566 45889999999999999974
No 100
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.1e-32 Score=279.53 Aligned_cols=290 Identities=10% Similarity=0.109 Sum_probs=230.8
Q ss_pred eeeeecCCCCcccccccccccccccccccceEEecccccC-----ccccccccCCceEEEEEEecCCccEEEEEeCCCcE
Q 009380 186 FKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-----PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNI 260 (536)
Q Consensus 186 v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-----~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v 260 (536)
..++.++++...+. +.++.+|.|.+|++... .......|.+.|++++|+|. ++.+|++|+.||.|
T Consensus 37 ~~~~~~~~~~~~~~---------~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~-~~~~l~s~s~dg~v 106 (402)
T 2aq5_A 37 SGFCAVNPKFMALI---------CEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH-NDNVIASGSEDCTV 106 (402)
T ss_dssp SCSEEECSSEEEEE---------BCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT-CTTEEEEEETTSEE
T ss_pred CCcEEECCCeEEEE---------EEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC-CCCEEEEEeCCCeE
Confidence 34566666665444 24577899999998442 23345789999999999995 57899999999999
Q ss_pred EEEECCCCCCC---CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee---cCCCceeEEEecC
Q 009380 261 TFWNLDSQQDE---DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY---SSEYAVFSLSQQP 334 (536)
Q Consensus 261 ~iwd~~~~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~---~~~~~i~~l~~~~ 334 (536)
+||++.+.... ...+..+.+|...|.+++|+|++..+|++++.||.|++||+.++.....+ .|...|.+++|+|
T Consensus 107 ~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 186 (402)
T 2aq5_A 107 MVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186 (402)
T ss_dssp EEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT
T ss_pred EEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC
Confidence 99999874210 15678889999999999999998579999999999999999998776555 5889999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCccceeE-eccCCC-eEEEEEecCCCCEEEEE---eCCCcEEEEeCCCCCCCCCCcce
Q 009380 335 NNVNTLYFGEGQGGLNIWDVRSRKSATEW-LLHEAR-INTIDFNPRNPNIMATS---STDGTACIWDLRSMATDKPEPMK 409 (536)
Q Consensus 335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~h~~~-i~~i~~~p~~~~~l~s~---s~dg~i~iwdl~~~~~~~~~~~~ 409 (536)
++ ++|++++.||.|++||+++++.+..+ ..|... +.++.|+|++ .+|++| +.|+.|++||+++... .....
T Consensus 187 ~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~--~~~~~ 262 (402)
T 2aq5_A 187 DG-ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEE--PLSLQ 262 (402)
T ss_dssp TS-SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSS--CSEEE
T ss_pred CC-CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccC--CceEE
Confidence 88 89999999999999999999998888 678776 8999999987 788888 7899999999998641 12223
Q ss_pred eecccCceeEEEEccCCCeEEE-EeCCCcEEEEeCCCCCc-ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEE
Q 009380 410 VLSHKRAVHSAYFSPSGSSLAT-TSFDDTIGIWSGVNFEN-TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEV 487 (536)
Q Consensus 410 ~~~~~~~v~~l~~sp~g~~l~t-~s~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v 487 (536)
...|...+.+++|+|++.+|++ ++.|+.|++||+.+.+. ...+.... ....+. .++|+|++.++++ .++.+++
T Consensus 263 ~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~--~~~~sp~~~~~~s--~~~~~~~ 337 (402)
T 2aq5_A 263 ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQR--GMGYMPKRGLEVN--KCEIARF 337 (402)
T ss_dssp ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCS--EEEECCGGGSCGG--GTEEEEE
T ss_pred eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCccc--ceEEeccccccee--cceeEEE
Confidence 3367889999999999998875 45799999999998875 44443221 222233 3779999988765 4669999
Q ss_pred EcCCccc
Q 009380 488 ISPAQRR 494 (536)
Q Consensus 488 ~d~~~~~ 494 (536)
|++.++.
T Consensus 338 ~~l~~~~ 344 (402)
T 2aq5_A 338 YKLHERK 344 (402)
T ss_dssp EEEETTE
T ss_pred EEcCCCc
Confidence 9998764
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8.7e-33 Score=272.69 Aligned_cols=267 Identities=16% Similarity=0.155 Sum_probs=218.7
Q ss_pred ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-----ccccccccCCceEEEEEEecCCcc
Q 009380 175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-----PENIARIMPGRITQMKFLPCSDVR 249 (536)
Q Consensus 175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-----~~~~~~~~~~~I~~v~~~p~~~~~ 249 (536)
++.++.+|.+.|.++.|+|++..++. ++.||.|++|++... .......|.+.|++++|+|..++.
T Consensus 3 ~~~~~~gH~~~v~~~~~~~~~~~l~~----------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~ 72 (351)
T 3f3f_A 3 MQPFDSGHDDLVHDVVYDFYGRHVAT----------CSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR 72 (351)
T ss_dssp CCCEECCCSSCEEEEEECSSSSEEEE----------EETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS
T ss_pred ccccCcccccceeEEEEcCCCCEEEE----------eeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC
Confidence 45678999999999999999998884 478899999998643 223346799999999999943489
Q ss_pred EEEEEeCCCcEEEEECCCCCCCC-----CceEEeccCCCCEEEEEEecC--CCCEEEEEECCCeEEEEECCCCeEEEe--
Q 009380 250 MVVAGSKLGNITFWNLDSQQDED-----NGIYLFRTHLGPISGIVTQQY--CLSKIFTSCYDGLIRLMDAEKEVFDLV-- 320 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~-----~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~dg~I~vwd~~~~~~~~~-- 320 (536)
+|++|+.||.|++||+....... ..+..+..|...|.+++|+|+ + .+|++++.||.|++||+.++.....
T Consensus 73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhcccc
Confidence 99999999999999998743211 457788899999999999999 7 9999999999999999987643211
Q ss_pred ------------ecCCCceeEEEecCC--CCCEEEEEECCCeEEEEECCCCcc--ceeEeccCCCeEEEEEecCCC---C
Q 009380 321 ------------YSSEYAVFSLSQQPN--NVNTLYFGEGQGGLNIWDVRSRKS--ATEWLLHEARINTIDFNPRNP---N 381 (536)
Q Consensus 321 ------------~~~~~~i~~l~~~~~--~~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~i~~~p~~~---~ 381 (536)
..+...+.+++|+|+ ++.++++++.++.+.+|+...++. +..+.+|...|++++|+|+++ +
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ 231 (351)
T ss_dssp EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE
T ss_pred ccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce
Confidence 146678999999997 348999999999998888877765 666778999999999999863 6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCC------------------------------------------CCcceeecccCceeE
Q 009380 382 IMATSSTDGTACIWDLRSMATDK------------------------------------------PEPMKVLSHKRAVHS 419 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~~~~~~------------------------------------------~~~~~~~~~~~~v~~ 419 (536)
+|++|+.||.|++||++...... .......+|...|++
T Consensus 232 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 311 (351)
T 3f3f_A 232 LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS 311 (351)
T ss_dssp EEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEE
T ss_pred EEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEE
Confidence 99999999999999998742100 122233468999999
Q ss_pred EEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE
Q 009380 420 AYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI 452 (536)
Q Consensus 420 l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~ 452 (536)
++|+|++++|++++.||.|+|||+.+++....+
T Consensus 312 ~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 312 VSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 999999999999999999999999887665544
No 102
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=275.26 Aligned_cols=261 Identities=13% Similarity=0.149 Sum_probs=215.8
Q ss_pred cceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC---ccccccccCCceEEEEEEecCCccEEE
Q 009380 176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK---PENIARIMPGRITQMKFLPCSDVRMVV 252 (536)
Q Consensus 176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~---~~~~~~~~~~~I~~v~~~p~~~~~~l~ 252 (536)
..++.+|...|.++.|+++++.++. ++.||.|++|++... .......|.+.|++++|+|..++.+|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~----------~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLAT----------CSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILA 73 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEE----------EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEE----------EECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEE
Confidence 4568999999999999999998884 477899999998522 233456799999999999832389999
Q ss_pred EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC--CCCEEEEEECCCeEEEEECCCC---eEEEeecCCCce
Q 009380 253 AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY--CLSKIFTSCYDGLIRLMDAEKE---VFDLVYSSEYAV 327 (536)
Q Consensus 253 tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~dg~I~vwd~~~~---~~~~~~~~~~~i 327 (536)
+|+.||.|++||+.+.. ...+..+..|...|.+++|+|+ + .+|++++.||.|++||+.++ .......|...|
T Consensus 74 s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v 150 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 150 (379)
T ss_dssp EEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCE
T ss_pred EeccCCEEEEEEcCCCc--eeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeEEecCCCCce
Confidence 99999999999998721 1267788889999999999999 7 99999999999999999876 334455788999
Q ss_pred eEEEecCC------------CCCEEEEEECCCeEEEEECCCCcc----ceeEeccCCCeEEEEEecCC--CCEEEEEeCC
Q 009380 328 FSLSQQPN------------NVNTLYFGEGQGGLNIWDVRSRKS----ATEWLLHEARINTIDFNPRN--PNIMATSSTD 389 (536)
Q Consensus 328 ~~l~~~~~------------~~~~l~~g~~dg~i~i~d~~~~~~----~~~~~~h~~~i~~i~~~p~~--~~~l~s~s~d 389 (536)
.+++|+|. +..+|++++.||.|++||++++.. +..+.+|...|.+++|+|++ +.+|++++.|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 230 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence 99999994 238999999999999999987753 45667899999999999983 4899999999
Q ss_pred CcEEEEeCCCCCCCC-CCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc
Q 009380 390 GTACIWDLRSMATDK-PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT 449 (536)
Q Consensus 390 g~i~iwdl~~~~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~ 449 (536)
|.|++||++.+.... ........|...|++++|+|++++|++++.||.|++|++......
T Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 999999999853111 011222248899999999999999999999999999998755433
No 103
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.5e-31 Score=257.26 Aligned_cols=276 Identities=12% Similarity=0.190 Sum_probs=226.9
Q ss_pred eeeecCCCCcccccccccccccccccccceEEecccccCcc-ccc--cccCCceEEEEEEecCCccEEEEEeCCCcEEEE
Q 009380 187 KTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIA--RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFW 263 (536)
Q Consensus 187 ~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~--~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iw 263 (536)
.++.+|+++ +|+. +.|+.|+|||+..... ... ..|...|++++|+| ++++|++|+.||+|++|
T Consensus 29 ~~l~WS~~~-~lAv-----------g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~--~~~~l~sgs~Dg~v~iw 94 (318)
T 4ggc_A 29 NLVDWSSGN-VLAV-----------ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLAVGTSSAEVQLW 94 (318)
T ss_dssp BCEEECTTS-EEEE-----------EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEEEEETTSEEEEE
T ss_pred eEEEECCCC-EEEE-----------EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC--CCCEEEEEECCCcEEEe
Confidence 567888876 5552 4688999999865432 222 45788899999999 99999999999999999
Q ss_pred ECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe--EEEeecCCCceeEEEecCCCCCEEE
Q 009380 264 NLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV--FDLVYSSEYAVFSLSQQPNNVNTLY 341 (536)
Q Consensus 264 d~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~--~~~~~~~~~~i~~l~~~~~~~~~l~ 341 (536)
++.+ +..+..+.+|...+.++.+. + ..+++++.++.+++|+..... ......|...+..+.+.+++ ++|+
T Consensus 95 ~~~~----~~~~~~~~~h~~~~~~~~~~--~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 166 (318)
T 4ggc_A 95 DVQQ----QKRLRNMTSHSARVGSLSWN--S-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLA 166 (318)
T ss_dssp ETTT----TEEEEEEECCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEE
T ss_pred ecCC----ceeEEEecCccceEEEeecC--C-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC-CEEE
Confidence 9998 78889999999998876665 4 789999999999999988753 34556788999999999998 8999
Q ss_pred EEECCCeEEEEECCCCcc----ceeEeccCCCeEEEEEecCCCCEEE--EEeCCCcEEEEeCCCCCCCCCCcceeecccC
Q 009380 342 FGEGQGGLNIWDVRSRKS----ATEWLLHEARINTIDFNPRNPNIMA--TSSTDGTACIWDLRSMATDKPEPMKVLSHKR 415 (536)
Q Consensus 342 ~g~~dg~i~i~d~~~~~~----~~~~~~h~~~i~~i~~~p~~~~~l~--s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~ 415 (536)
+++.||.|++||+++++. ......|...|.++.++|++.+++. +++.++.|++||.+.. .......+..
T Consensus 167 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-----~~~~~~~~~~ 241 (318)
T 4ggc_A 167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-----ACLSAVDAHS 241 (318)
T ss_dssp EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-----CEEEEEECSS
T ss_pred EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-----ccccccccee
Confidence 999999999999998764 3445578889999999998877654 5567899999999874 4455567888
Q ss_pred ceeEEEEccCCCeEEEEe--CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 416 AVHSAYFSPSGSSLATTS--FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 416 ~v~~l~~sp~g~~l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
.+..+.|+|++..+++++ .|+.|+|||+.+++.+..+..+ ...+. .++|+|+|++|++|+.|+.|+|||+.+.
T Consensus 242 ~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH---~~~V~--~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH---TSRVL--SLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC---SSCEE--EEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC---CCCEE--EEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 999999999998887765 7999999999999988877522 12344 4789999999999999999999998765
Q ss_pred c
Q 009380 494 R 494 (536)
Q Consensus 494 ~ 494 (536)
.
T Consensus 317 d 317 (318)
T 4ggc_A 317 D 317 (318)
T ss_dssp C
T ss_pred C
Confidence 3
No 104
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-31 Score=275.08 Aligned_cols=285 Identities=14% Similarity=0.036 Sum_probs=222.0
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec----------------------------------
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR---------------------------------- 279 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~---------------------------------- 279 (536)
..+|.+++|+| +|++|+++. ++.|++||+.++.. ...+..+.
T Consensus 4 ~~p~~~v~~s~--dg~~l~~~~-~~~i~v~d~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 4 IHPLQNLLTSR--DGSLVFAII-KNCILSFKYQSPNH-WEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp ECCCCEEEECS--SSSEEEEEE-TTEEEEEEEETTTE-EEEEEEEECCC-------------------------------
T ss_pred cccEEEEEecC--CCCEEEEEe-CCeEEEEECCCCCc-ceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 35789999999 999777664 78999999877420 00222222
Q ss_pred --------------------cCCCCEEEEEEecCCCCEE-EEEECCCeEEEEECC--CCeEEEee---cCCCceeEEEec
Q 009380 280 --------------------THLGPISGIVTQQYCLSKI-FTSCYDGLIRLMDAE--KEVFDLVY---SSEYAVFSLSQQ 333 (536)
Q Consensus 280 --------------------~h~~~V~~l~~~~~~~~~l-~s~s~dg~I~vwd~~--~~~~~~~~---~~~~~i~~l~~~ 333 (536)
+|.+.|.+++|+|++ .+| ++++.||.|++||+. ++.....+ .+...|.+++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 158 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDE-SRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA 158 (450)
T ss_dssp --------------------CCCCCEEEEEECTTS-SEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcCCC-CEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence 455579999999999 775 899999999999998 66555443 567899999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCccce----eEeccCCCeEEEEEecC---CCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 009380 334 PNNVNTLYFGEGQGGLNIWDVRSRKSAT----EWLLHEARINTIDFNPR---NPNIMATSSTDGTACIWDLRSMATDKPE 406 (536)
Q Consensus 334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~----~~~~h~~~i~~i~~~p~---~~~~l~s~s~dg~i~iwdl~~~~~~~~~ 406 (536)
|++ .+|++|+.+|.|++|++.++.... .+.+|...|.+++|+|+ + .+|++|+.|+.|++||++++. .
T Consensus 159 p~~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~----~ 232 (450)
T 2vdu_B 159 EDD-TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCF----I 232 (450)
T ss_dssp TTS-SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTT----C
T ss_pred CCC-CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCc----e
Confidence 998 899999999999999999877554 77789999999999998 5 799999999999999998753 3
Q ss_pred cce-eecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC--------------------CCceeeee
Q 009380 407 PMK-VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ--------------------TGRWISSF 465 (536)
Q Consensus 407 ~~~-~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~--------------------~~~~~~~~ 465 (536)
... ..+|...|.+++|+ ++.+|++++.|+.|++||+.+++.+..+..... ........
T Consensus 233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 233 VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 333 34799999999999 999999999999999999999988777752210 01112234
Q ss_pred EEEEcCCCCEEEEEc-CCCcEEEEcC--Ccc---ccceeccCCceeeeeeeEeecCCCCCEEEEEcc-------CCeEEE
Q 009380 466 RAIWGWDDSCVFIGN-MTRTVEVISP--AQR---RSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-------GGQVYV 532 (536)
Q Consensus 466 ~~~~s~~g~~l~~gs-~dg~I~v~d~--~~~---~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~-------Dg~v~i 532 (536)
.+.|+|++++|++++ .++.|+||++ .++ ..+..+..+ .. ...++|+| + .++++.+. +..|.|
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~--v~~~~~~~-~-~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YN--VISLSAHN-D-EFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SC--EEEEEEET-T-EEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cc--eEEEEecC-C-cEEEEEecccCCCCCCcceEE
Confidence 478999999999998 8999999999 555 556666665 22 25788998 4 45555433 556888
Q ss_pred Eec
Q 009380 533 WTS 535 (536)
Q Consensus 533 W~~ 535 (536)
|.+
T Consensus 387 ~~~ 389 (450)
T 2vdu_B 387 IEY 389 (450)
T ss_dssp EEE
T ss_pred EEE
Confidence 865
No 105
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2e-31 Score=273.18 Aligned_cols=277 Identities=13% Similarity=0.200 Sum_probs=223.3
Q ss_pred cccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEEeCCC
Q 009380 180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGSKLG 258 (536)
Q Consensus 180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg 258 (536)
.+|...|.++.+ ++..++ +++.||.|++||+... ......+|.+.|++++| ++.+|++|+.||
T Consensus 130 ~~~~~~v~~~~~--d~~~l~----------~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~----~~~~l~sg~~dg 193 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIV----------SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDS 193 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEE----------EEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC----CSSEEEEEETTS
T ss_pred cCCCCcEEEEEE--CCCEEE----------EEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE----CCCEEEEEcCCC
Confidence 456778888887 677666 4578899999998543 33456789999999998 568999999999
Q ss_pred cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE----EEeecCCCceeEEEecC
Q 009380 259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF----DLVYSSEYAVFSLSQQP 334 (536)
Q Consensus 259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~----~~~~~~~~~i~~l~~~~ 334 (536)
.|++||+.+ +..+..+.+|...|.+++|++ .+|++|+.||.|++||+.++.. ....+|...|.+++|
T Consensus 194 ~i~vwd~~~----~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-- 264 (435)
T 1p22_A 194 TVRVWDVNT----GEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-- 264 (435)
T ss_dssp CEEEEESSS----CCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--
T ss_pred eEEEEECCC----CcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--
Confidence 999999998 678889999999999999974 6999999999999999987653 345578899999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc
Q 009380 335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK 414 (536)
Q Consensus 335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~ 414 (536)
++ +++++|+.||.|++||+++++.+..+.+|...|.++.|+ + .++++|+.||.|++||+++++ ....+.+|.
T Consensus 265 ~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~----~~~~~~~h~ 336 (435)
T 1p22_A 265 DD-KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA----CLRVLEGHE 336 (435)
T ss_dssp ET-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCC----EEEEECCCS
T ss_pred CC-CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCC----EEEEEeCCc
Confidence 34 799999999999999999999999999999999999996 3 699999999999999999863 445566899
Q ss_pred CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC---------cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380 415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE---------NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV 485 (536)
Q Consensus 415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I 485 (536)
..|.+++| ++.+|++++.||.|++||+.+.. ....+.. ....+.. +.| ++.+|++|+.||.|
T Consensus 337 ~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---h~~~v~~--l~~--~~~~l~s~s~Dg~i 407 (435)
T 1p22_A 337 ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE---HSGRVFR--LQF--DEFQIVSSSHDDTI 407 (435)
T ss_dssp SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC---CSSCCCC--EEE--CSSCEEECCSSSEE
T ss_pred CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC---CCCCeEE--EEe--CCCEEEEEeCCCEE
Confidence 99999999 78899999999999999986554 3333321 1122333 455 78899999999999
Q ss_pred EEEcCCcccccee
Q 009380 486 EVISPAQRRSVAT 498 (536)
Q Consensus 486 ~v~d~~~~~~~~~ 498 (536)
++||+.+......
T Consensus 408 ~iwd~~~~~~~~~ 420 (435)
T 1p22_A 408 LIWDFLNDPAAQA 420 (435)
T ss_dssp EEEC---------
T ss_pred EEEECCCCCCccc
Confidence 9999988755443
No 106
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-32 Score=283.74 Aligned_cols=285 Identities=13% Similarity=0.113 Sum_probs=211.8
Q ss_pred eecccccceeeeecCCC------CcccccccccccccccccccceEEecccccCcc------------ccccccCCceEE
Q 009380 178 VIKDEFNGFKTCKDEGL------GVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE------------NIARIMPGRITQ 239 (536)
Q Consensus 178 ~~~~~~~~v~~~~~s~~------~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~------------~~~~~~~~~I~~ 239 (536)
.+.+|...|..+.|+|+ +.+|+ +++.||.|+||++..... ..+.+|.+.|++
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LA----------s~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~s 271 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLS----------FVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITT 271 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEE----------EEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEE----------EEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEE
Confidence 45678899999999997 34555 458899999999854321 245678899999
Q ss_pred EEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEE--EEecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380 240 MKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGI--VTQQYCLSKIFTSCYDGLIRLMDAEKEVF 317 (536)
Q Consensus 240 v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l--~~~~~~~~~l~s~s~dg~I~vwd~~~~~~ 317 (536)
++|+| ++ .|++|+.||+|++||+.+. ......+.+|...|.+| .|+|++..+|+||+.|++|++||++++..
T Consensus 272 v~~s~--~~-~lasgs~DgtV~lWD~~~~---~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 272 FDFLS--PT-TVVCGFKNGFVAEFDLTDP---EVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp EEESS--SS-EEEEEETTSEEEEEETTBC---SSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred EEecC--CC-eEEEEeCCCEEEEEECCCC---CCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 99998 54 8999999999999999863 24456788999999999 46666437899999999999999988654
Q ss_pred EE-eecCC--CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEE
Q 009380 318 DL-VYSSE--YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACI 394 (536)
Q Consensus 318 ~~-~~~~~--~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~i 394 (536)
.. +.+|. ..|.+++|+|++ ..+++++.|++|++||++++.++..+.+|...|++|+|+|++ .+|++|+.||+|++
T Consensus 346 ~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~l 423 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLH-PMVLAGSADGSLII 423 (524)
T ss_dssp HCEEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSC-CBCEEEETTTEEEC
T ss_pred ccccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCC-CeEEEEECCCEEEE
Confidence 32 22343 358899999998 789999999999999999999888999999999999999988 68999999999999
Q ss_pred EeCCCCCCCCCCcceee-----cccCceeEEEEccCCCeEEEEeCCCcEEEEeCC-CCCcceEEeccCCCCceeeeeEEE
Q 009380 395 WDLRSMATDKPEPMKVL-----SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV-NFENTSMIHHNNQTGRWISSFRAI 468 (536)
Q Consensus 395 wdl~~~~~~~~~~~~~~-----~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~ 468 (536)
||+... ...... .+...|.+++|+|++..+. .. +.+.+|+.. ++.....+.. ....+ ..++
T Consensus 424 wd~~~~-----~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~--~~~~~~~~~~~g~~~~~l~g---h~~~V--~~Va 490 (524)
T 2j04_B 424 TNAARR-----LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-ID--SSYEVYPLTVNDVSKAKIDA---HGINI--TCTK 490 (524)
T ss_dssp CBSCSS-----TTTCC------CCCCEEEECBCCSSSCEEE-EC--CCCCCCC----------------CCCSC--CCEE
T ss_pred EechHh-----hccccccCccceeeeEEEEeccCCCCCeEE-cc--CCceecccccCCcceeeecC---CCceE--EEEE
Confidence 998652 111111 1223578999999998542 22 223344332 2333333321 11223 3478
Q ss_pred EcCCCC---EEEEEcCCCcEEEEcCCcc
Q 009380 469 WGWDDS---CVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 469 ~s~~g~---~l~~gs~dg~I~v~d~~~~ 493 (536)
|+|++. .+++|+.+|.|+||++...
T Consensus 491 fsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 491 WNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp ECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCCCCCccHHHHhhccCceEEEEEcccc
Confidence 999964 8999999999999997653
No 107
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-31 Score=266.48 Aligned_cols=269 Identities=9% Similarity=0.034 Sum_probs=205.1
Q ss_pred EEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-----
Q 009380 240 MKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK----- 314 (536)
Q Consensus 240 v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~----- 314 (536)
..+.+ ++.+|++|+.||.|++||+.+ +..+..+. ...|.++.|+|. +++++.|++|++|+...
T Consensus 42 ~~~~~--d~~~l~sg~~Dg~v~iwd~~~----~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 42 KSMYY--DKWVCMCRCEDGALHFTQLKD----SKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITIL 109 (343)
T ss_dssp SSSSE--EEEEEEEEEETTEEEEEEESS----SSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEE
T ss_pred hhhcC--CCCEEEEECCCCcEEEEECCC----CcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEe
Confidence 34445 788999999999999999987 55666655 456778888875 99999999999997763
Q ss_pred ----CeEEE--eecCCCceeEEEecC--CCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEE
Q 009380 315 ----EVFDL--VYSSEYAVFSLSQQP--NNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMAT 385 (536)
Q Consensus 315 ----~~~~~--~~~~~~~i~~l~~~~--~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s 385 (536)
+.... ...|...|.+++|+| ++ +++++++.||.|++||+++++.+.... .|...|.+++|+|++ .+|++
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg-~~las 187 (343)
T 3lrv_A 110 DSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS-LLLAL 187 (343)
T ss_dssp ETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS-CEEEE
T ss_pred ecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC-CEEEE
Confidence 33222 224667899999999 87 899999999999999999998866654 456689999999987 79999
Q ss_pred EeCCCcEEEEeCCCCCCCCCCc-ceeec-ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceee
Q 009380 386 SSTDGTACIWDLRSMATDKPEP-MKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWIS 463 (536)
Q Consensus 386 ~s~dg~i~iwdl~~~~~~~~~~-~~~~~-~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 463 (536)
|+.||.|++||+++++ .. ..+.. |...|++++|+|+|.+|++++ |+.|++||+++.+....+.........+.
T Consensus 188 g~~dg~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (343)
T 3lrv_A 188 YSPDGILDVYNLSSPD----QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTG 262 (343)
T ss_dssp ECTTSCEEEEESSCTT----SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----C
T ss_pred EcCCCEEEEEECCCCC----CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccccccccc
Confidence 9999999999999864 23 34555 999999999999999999999 55999999998876654432111111111
Q ss_pred eeEEEEcCCCCEEEEEcC-CCcEEEEcCCccccceeccCCceeeeeeeEeecC--CCCCEEEEEccCCeEEEE
Q 009380 464 SFRAIWGWDDSCVFIGNM-TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHP--HQVGTLAGATGGGQVYVW 533 (536)
Q Consensus 464 ~~~~~~s~~g~~l~~gs~-dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p--~~~~~lasgs~Dg~v~iW 533 (536)
...++|+|+|++|++++. |+.|+||++......... ... ..+.|.| .+...|++++.||.+.++
T Consensus 263 ~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 263 TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEE--SALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEE--EECCC----CCCCEEEEEEETTEEEEE
T ss_pred ceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCc--eeEecCccccccceeEEEecCCceEEE
Confidence 134789999999999988 999999999766544333 111 2344544 345789999999998886
No 108
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.7e-31 Score=264.55 Aligned_cols=293 Identities=13% Similarity=0.086 Sum_probs=231.2
Q ss_pred cccccceecccccceeeeecCCC---CcccccccccccccccccccceEEeccccc-Ccc--ccccccCCceEEEEEEec
Q 009380 172 DENLGFVIKDEFNGFKTCKDEGL---GVGSCDLIKGVVKTEKIEVGSCVDIGSLTL-KPE--NIARIMPGRITQMKFLPC 245 (536)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~-~~~--~~~~~~~~~I~~v~~~p~ 245 (536)
.+.....+.+|.+.|.++.|+|+ |..++ +++.||.|+||++.. ... .....|.+.|++++|+|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~----------~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~- 96 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLI----------AGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD- 96 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEE----------EEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEE----------EECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-
Confidence 34455678999999999999999 58777 457889999999865 222 45677999999999999
Q ss_pred CCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEE--ecCCCCEEEEEECCCeEEEEECCCCeEEEeecC
Q 009380 246 SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVT--QQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS 323 (536)
Q Consensus 246 ~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~ 323 (536)
++.+|++|+.||.|++||+.+ .. ...+..|...|.+++| ++++ .+|++++.||.|++||++++.....+..
T Consensus 97 -~~~~l~s~~~dg~v~iwd~~~----~~-~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 169 (368)
T 3mmy_A 97 -DGSKVFTASCDKTAKMWDLSS----NQ-AIQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQL 169 (368)
T ss_dssp -TSSEEEEEETTSEEEEEETTT----TE-EEEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEEC
T ss_pred -CCCEEEEEcCCCcEEEEEcCC----CC-ceeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEec
Confidence 999999999999999999986 33 4446779999999999 7887 8999999999999999999887777777
Q ss_pred CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCC---CEEEEEeCCCcEEEEeCC
Q 009380 324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNP---NIMATSSTDGTACIWDLR 398 (536)
Q Consensus 324 ~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~---~~l~s~s~dg~i~iwdl~ 398 (536)
...+.++.+.+ ..+++++.++.+.+||++......... .+...+.++.+.++.. ..+++++.||.|++||++
T Consensus 170 ~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~ 246 (368)
T 3mmy_A 170 PERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN 246 (368)
T ss_dssp SSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESS
T ss_pred CCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecC
Confidence 77888888875 478889999999999998765432221 3455667777766442 239999999999999998
Q ss_pred CCCCCCCCcceeecccC------------ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeE
Q 009380 399 SMATDKPEPMKVLSHKR------------AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFR 466 (536)
Q Consensus 399 ~~~~~~~~~~~~~~~~~------------~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 466 (536)
..... .....+..|.. .|++++|+|++++|++++.||.|++||+.+++.+..+... ...+. .
T Consensus 247 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~--~ 320 (368)
T 3mmy_A 247 PPNPA-KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL---DQPIS--A 320 (368)
T ss_dssp CSCHH-HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC---SSCEE--E
T ss_pred CCCcc-ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC---CCCce--E
Confidence 75210 12334445554 7999999999999999999999999999988777666421 22333 4
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380 467 AIWGWDDSCVFIGNMTRTVEVISPA 491 (536)
Q Consensus 467 ~~~s~~g~~l~~gs~dg~I~v~d~~ 491 (536)
++|+|+|.+|++++.|+..+.|++.
T Consensus 321 ~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 321 CCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EEECTTSSCEEEEECCCSTTCGGGC
T ss_pred EEECCCCCeEEEEeccccccccccc
Confidence 7899999999999998765555443
No 109
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-32 Score=297.37 Aligned_cols=258 Identities=17% Similarity=0.200 Sum_probs=210.5
Q ss_pred ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC--CCCEEEEEECCC
Q 009380 228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY--CLSKIFTSCYDG 305 (536)
Q Consensus 228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~dg 305 (536)
.+..+|.+.|++++|+| ++++|++|+.||.|+||++.... ...+..+.+|.++|.+++|+|+ + ++|++|+.||
T Consensus 3 ~~l~gH~~~V~~l~~s~--dg~~latg~~dg~I~vwd~~~~~--~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg 77 (753)
T 3jro_A 3 VIANAHNELIHDAVLDY--YGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDG 77 (753)
T ss_dssp -----CCCCEEEECCCS--SSCCEEEEETTTEEEEEEEETTE--EEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTS
T ss_pred eecccCcceeEEEEECC--CCCeEEEEECCCcEEEEecCCCC--CccceeccCCcCceEEEEecCCCCC-CEEEEEeCCC
Confidence 35689999999999999 99999999999999999997422 5677889999999999999987 6 9999999999
Q ss_pred eEEEEECCCCe---EEEeecCCCceeEEEecCC--CCCEEEEEECCCeEEEEECCCCcc--ceeEeccCCCeEEEEEecC
Q 009380 306 LIRLMDAEKEV---FDLVYSSEYAVFSLSQQPN--NVNTLYFGEGQGGLNIWDVRSRKS--ATEWLLHEARINTIDFNPR 378 (536)
Q Consensus 306 ~I~vwd~~~~~---~~~~~~~~~~i~~l~~~~~--~~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~i~~~p~ 378 (536)
.|++||+.++. ......|...|.+++|+|+ + +++++|+.||.|++||++++.. ...+..|...|.+++|+|.
T Consensus 78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred eEEEEECCCCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence 99999999885 3445568899999999998 6 8999999999999999998743 4566789999999999995
Q ss_pred ------------CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC---CCeEEEEeCCCcEEEEeC
Q 009380 379 ------------NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS---GSSLATTSFDDTIGIWSG 443 (536)
Q Consensus 379 ------------~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~---g~~l~t~s~dg~I~iwd~ 443 (536)
++.+|++|+.||.|++||++++.........+.+|...|++++|+|+ +.+|++++.||.|++||+
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence 24789999999999999998854221223344579999999999999 899999999999999999
Q ss_pred CCCCcceEE--eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 444 VNFENTSMI--HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 444 ~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
.++...... .........+ ..++|+|+|.+|++|+.||.|++|++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v--~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 237 DNEQGPWKKTLLKEEKFPDVL--WRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SSSSSCCBCCBSSSSCCSSCC--CCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCcceeEEeccCCCCCce--EEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 876432221 1111122223 34789999999999999999999999854
No 110
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.9e-31 Score=269.95 Aligned_cols=256 Identities=19% Similarity=0.267 Sum_probs=211.4
Q ss_pred ccccCCceEEEEEEecCC-ccEEEEEeCCCcEEEEECCCCC------CCCCceEEeccCCCCEEEEEEecCCCCEEEEEE
Q 009380 230 ARIMPGRITQMKFLPCSD-VRMVVAGSKLGNITFWNLDSQQ------DEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC 302 (536)
Q Consensus 230 ~~~~~~~I~~v~~~p~~~-~~~l~tg~~dg~v~iwd~~~~~------~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s 302 (536)
...|.+.|++++|+| + +.+|++|+.+|.|++|++.... .....+..+.+|...|.+++|+|++..+|++|+
T Consensus 124 ~~~h~~~v~~l~~~p--~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 124 KINHEGEVNRARYMP--QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEESSCCSEEEEET--TEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEcCCCcEEEEEECC--CCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 356899999999999 6 6899999999999999997521 114567788899999999999999844999999
Q ss_pred CCCeEEEEECCCCe--------EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC---ccceeEeccCCCeE
Q 009380 303 YDGLIRLMDAEKEV--------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR---KSATEWLLHEARIN 371 (536)
Q Consensus 303 ~dg~I~vwd~~~~~--------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~---~~~~~~~~h~~~i~ 371 (536)
.||.|++||+..+. ......|...|.+++|+|++.++|++++.||.|++||++++ +.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 99999999998732 23344788999999999966689999999999999999987 56778889999999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCC-eEEEEeCCCcEEEEeCCCCCc--
Q 009380 372 TIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFEN-- 448 (536)
Q Consensus 372 ~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~t~s~dg~I~iwd~~~~~~-- 448 (536)
+++|+|++..+|++|+.||.|++||++... .....+..|...|.+++|+|++. +|++++.|+.|+|||+.....
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~---~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~ 358 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLK---LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTT---SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCC---CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence 999999987799999999999999999743 23455567999999999999885 689999999999999976321
Q ss_pred ----------ceEEeccCCCCceeeeeEEEEcCCCC-EEEEEcCCCcEEEEcCCcc
Q 009380 449 ----------TSMIHHNNQTGRWISSFRAIWGWDDS-CVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 449 ----------~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs~dg~I~v~d~~~~ 493 (536)
.....+. .....+. .++|+|++. +|++++.||.|+||++...
T Consensus 359 ~~~~~~~~~~~~~~~~~-~h~~~v~--~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 359 STEDAEDGPPELLFIHG-GHTAKIS--DFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CHHHHHHCCTTEEEECC-CCSSCEE--EEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccccCCcceEEEcC-CCCCCce--EEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 2222222 2222333 478999999 8999999999999999765
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.2e-30 Score=260.05 Aligned_cols=281 Identities=11% Similarity=0.095 Sum_probs=210.2
Q ss_pred ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEE-EEEECCCeEE
Q 009380 230 ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKI-FTSCYDGLIR 308 (536)
Q Consensus 230 ~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l-~s~s~dg~I~ 308 (536)
...|.+.|++++|+| ++.+|++|+.+| ++||++.. ........ ...+..+.+.+++ +.+ ++++.|++|+
T Consensus 15 ~~~h~~~V~~v~fs~--dg~~la~g~~~~-~~iw~~~~----~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~d~~v~ 84 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQ--DQSCLILSTLKS-FEIYNVHP----VAHIMSQE--MRHLSKVRMLHRT-NYVAFVTGVKEVVH 84 (355)
T ss_dssp ----CCCCCEEEECT--TSSEEEEECSSE-EEEEEETT----EEEEEEEE--CSCCCEEEECTTS-SEEEEECSSTTEEE
T ss_pred cccCCCceEEEEECC--CCCEEEEEcCCE-EEEEecCC----cceeeeee--cCCeEEEEEcCCC-CEEEEEECCccEEE
Confidence 477999999999999 999999998775 78999875 33333322 2357788898887 655 6778889999
Q ss_pred EEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC-ccceeEeccCCCeEEEEEecCCCCEEEE--
Q 009380 309 LMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR-KSATEWLLHEARINTIDFNPRNPNIMAT-- 385 (536)
Q Consensus 309 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~i~~~p~~~~~l~s-- 385 (536)
+||+.++.....+.+...|.+++|+++. ++++. ++.|++||+.++ +.+..+.. ....+++++ .++++
T Consensus 85 iWd~~~~~~~~~~~~~~~v~~v~~~~~~---~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~---~~la~~s 154 (355)
T 3vu4_A 85 IWDDVKKQDVSRIKVDAPVKDLFLSREF---IVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSN---GLLVYSN 154 (355)
T ss_dssp EEETTTTEEEEEEECSSCEEEEEECSSE---EEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEET---TEEEEEE
T ss_pred EEECCCCcEEEEEECCCceEEEEEcCCE---EEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEc---cEEEEeC
Confidence 9999999888888888899999998753 44443 679999999988 77776664 445566776 35555
Q ss_pred EeCCCcEEEEeCCCCCCC----C--------CCcceeecccCceeEEEEccCCCeEEEEeCCCc-EEEEeCCCCCcceEE
Q 009380 386 SSTDGTACIWDLRSMATD----K--------PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDT-IGIWSGVNFENTSMI 452 (536)
Q Consensus 386 ~s~dg~i~iwdl~~~~~~----~--------~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~-I~iwd~~~~~~~~~~ 452 (536)
|+.||.|++||++++... . +....+.+|...|++++|+|+|++|++++.|++ |+|||+.+++.+..+
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~ 234 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF 234 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 588999999999875310 0 014456689999999999999999999999998 999999999988887
Q ss_pred eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccc--eeccC--------------------Cceeeeeee
Q 009380 453 HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSV--ATLQS--------------------PYISAIPCR 510 (536)
Q Consensus 453 ~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~--~~l~~--------------------~~~~~~~~~ 510 (536)
.... ....+ ..++|+|++++|++++.|+.|++||+..+... ..+.. ..... .+.
T Consensus 235 ~~g~-h~~~v--~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 310 (355)
T 3vu4_A 235 RRGL-DRADV--VDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVR-GCK 310 (355)
T ss_dssp ECTT-CCSCE--EEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCC-CCE
T ss_pred EcCC-CCCcE--EEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCC-ceE
Confidence 6210 11223 34789999999999999999999999765321 11111 00000 145
Q ss_pred EeecCCCCCEEEEEccCCeEEEEec
Q 009380 511 FHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 511 ~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
++|+| ++.+|++++.||.+++|++
T Consensus 311 ~a~~~-d~~~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 311 IAWIS-ESSLVVVWPHTRMIETFKV 334 (355)
T ss_dssp EEESS-SSEEEEEETTTTEEEEEEE
T ss_pred EEEeC-CCCEEEEEeCCCeEEEEEE
Confidence 78888 5689999999999999986
No 112
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.5e-31 Score=270.22 Aligned_cols=257 Identities=16% Similarity=0.238 Sum_probs=214.4
Q ss_pred ceecccccceeeeecCCC-CcccccccccccccccccccceEEeccccc-----------CccccccccCCceEEEEEEe
Q 009380 177 FVIKDEFNGFKTCKDEGL-GVGSCDLIKGVVKTEKIEVGSCVDIGSLTL-----------KPENIARIMPGRITQMKFLP 244 (536)
Q Consensus 177 ~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~-----------~~~~~~~~~~~~I~~v~~~p 244 (536)
....+|...|.++.|+|+ +.+++ +++.+|.|.+|++.. .+......|.+.|++++|+|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~la----------t~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIA----------TKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEE----------EECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEcCCCcEEEEEECCCCCcEEE----------EECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC
Confidence 345779999999999998 56666 346789999999864 34455678999999999999
Q ss_pred cCCcc-EEEEEeCCCcEEEEECCCCCCCC---CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC----e
Q 009380 245 CSDVR-MVVAGSKLGNITFWNLDSQQDED---NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE----V 316 (536)
Q Consensus 245 ~~~~~-~l~tg~~dg~v~iwd~~~~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~----~ 316 (536)
++. +|++|+.||.|++|++....... .....+.+|...|.+++|+|++..+|++++.||.|++||++++ .
T Consensus 192 --~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~ 269 (430)
T 2xyi_A 192 --NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP 269 (430)
T ss_dssp --TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSC
T ss_pred --CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcc
Confidence 777 99999999999999998632111 1245677899999999999965589999999999999999876 2
Q ss_pred EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC-CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380 317 FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS-RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIW 395 (536)
Q Consensus 317 ~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw 395 (536)
...+..|...|.+++|+|++..+|++|+.||.|++||+++ ...+..+..|...|.+++|+|++..+|++++.||.|+||
T Consensus 270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349 (430)
T ss_dssp SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEE
T ss_pred eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEE
Confidence 3344578899999999999877899999999999999998 566888989999999999999987899999999999999
Q ss_pred eCCCCCCCC----------CCcceeecccCceeEEEEccCCC-eEEEEeCCCcEEEEeCCC
Q 009380 396 DLRSMATDK----------PEPMKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 396 dl~~~~~~~----------~~~~~~~~~~~~v~~l~~sp~g~-~l~t~s~dg~I~iwd~~~ 445 (536)
|++...... .......+|...|++++|+|++. +|++++.||.|+||++..
T Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 350 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred eCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 998743211 12233347889999999999998 899999999999999864
No 113
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-31 Score=269.49 Aligned_cols=294 Identities=9% Similarity=0.031 Sum_probs=218.7
Q ss_pred cccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEE
Q 009380 182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNIT 261 (536)
Q Consensus 182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~ 261 (536)
-.++|.++.|+|||+.++ +++.|++|+ +.... ....+|+..|++|+|+| +| .++.+.
T Consensus 14 ~~~~v~sv~~SpDG~~iA----------Sas~D~TV~--d~~~~--~~l~gh~~~v~~V~FsP--dg-------~~~~~~ 70 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYL----------TTFPDISIG--QPKYA--KDINCNSKNLFHVKEFP--LE-------FENKLD 70 (588)
T ss_dssp CSSSSCCEEECTTSCEEE----------ECSSSEEEE--EECCC--SCCSSBGGGTEEEEEEC--CC-------CCCTTT
T ss_pred hhccEEEEEECCCCCEEE----------EEcCCceee--ccccc--ceecCCCccEEEEEECC--CC-------CcceEE
Confidence 348999999999999999 458888888 53222 33479999999999999 77 455555
Q ss_pred EEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCC-----ceeEEEecCCC
Q 009380 262 FWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEY-----AVFSLSQQPNN 336 (536)
Q Consensus 262 iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~-----~i~~l~~~~~~ 336 (536)
+|+.+ ......+ .|...|.+++|+|+| .+|++++.||.|++||.++ +...+.|.. .+.+++|+|++
T Consensus 71 ~~~~~-----~~~~~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG 141 (588)
T 2j04_A 71 FELAQ-----QNGLLNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIE 141 (588)
T ss_dssp TSCCC-----SSCSSTT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSS
T ss_pred EEeCC-----CceEeec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCC
Confidence 55543 2222232 458899999999999 9999999999999999655 333333444 59999999998
Q ss_pred CCEEEEEECCCeEEEEECCCCcc-------ceeE----eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 009380 337 VNTLYFGEGQGGLNIWDVRSRKS-------ATEW----LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405 (536)
Q Consensus 337 ~~~l~~g~~dg~i~i~d~~~~~~-------~~~~----~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~ 405 (536)
++|++|+.||+|++||+.++.. +.++ .+|...|.+++|+|++ +++++.|++|++||+...... .
T Consensus 142 -~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~-~ 216 (588)
T 2j04_A 142 -SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQ-P 216 (588)
T ss_dssp -SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSC-C
T ss_pred -CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccc-c
Confidence 8999999999999999998763 4666 5677899999999976 788888999999999875310 0
Q ss_pred Cccee-ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE-eccCCCCceeeeeEEEE--cCCCCEEEEEcC
Q 009380 406 EPMKV-LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI-HHNNQTGRWISSFRAIW--GWDDSCVFIGNM 481 (536)
Q Consensus 406 ~~~~~-~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~--s~~g~~l~~gs~ 481 (536)
....+ .+|...|.+++|+ |++|++++ +++|++||+.+++..... .|. ..+.. +.| +|++..|++++.
T Consensus 217 ~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~----~~V~~--va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 217 VSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSL----ENFHI--IPLNHEKESTILLMSNK 287 (588)
T ss_dssp CEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCC----SCCCE--EEETTCSSCEEEEECSS
T ss_pred ceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCC----ceEEE--EEeeeCCCCCEEEEEcC
Confidence 11223 2688999999999 68888887 699999999876653222 222 22333 678 999999999999
Q ss_pred CCcEEEEcCCc------c-----------------ccceeccCCceeeeeeeEeecCCCCCEEEEEcc
Q 009380 482 TRTVEVISPAQ------R-----------------RSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 526 (536)
Q Consensus 482 dg~I~v~d~~~------~-----------------~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~ 526 (536)
+|. ++|.... + ..+..+.+ ......++++| +|..+|+++.
T Consensus 288 dG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~---~~~I~~va~SP-dG~~lA~~~~ 350 (588)
T 2j04_A 288 TSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET---TLVIHGISLSP-DGYSIAIVYD 350 (588)
T ss_dssp CEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC---EEEEEEEEECT-TSSEEEEEEE
T ss_pred CCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc---ceEEEEEEECC-CCCEEEEEEe
Confidence 999 8887631 1 11222211 22235688999 6789998863
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=5.1e-30 Score=258.52 Aligned_cols=306 Identities=11% Similarity=0.098 Sum_probs=236.6
Q ss_pred cccccceEEecccccCccccccccCCceEEEEEEecCCccEE-EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEE
Q 009380 210 KIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMV-VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGI 288 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l 288 (536)
.++.++.|.+|++..........+...+.+++|+| ++.+| ++++.|+.|++||+.+ +..+..+..|. .+.++
T Consensus 7 s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~----~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 7 ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISP--DGTKVYVANAHSNDVSIIDTAT----NNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT--TSSEEEEEEGGGTEEEEEETTT----TEEEEEEECSS-SEEEE
T ss_pred EcCCCCEEEEEECCCCeEEEEeecCCCcceEEECC--CCCEEEEECCCCCeEEEEECCC----CeEEEEEECCC-Cccce
Confidence 46778999999986543322223345699999999 88876 6777999999999987 56666666555 89999
Q ss_pred EEecCCCCEEE-EEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC
Q 009380 289 VTQQYCLSKIF-TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE 367 (536)
Q Consensus 289 ~~~~~~~~~l~-s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~ 367 (536)
+|+|++ ++|+ +++.++.|++||+.+++......+...+.+++|+|++..++++++.++.|++||+.+++.+..+..+
T Consensus 80 ~~spdg-~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~- 157 (391)
T 1l0q_A 80 AVSPDG-KQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG- 157 (391)
T ss_dssp EECTTS-SEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-
T ss_pred EECCCC-CEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-
Confidence 999999 7665 5556799999999999888777777889999999998434477888999999999999888887754
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe---CCCcEEEEeCC
Q 009380 368 ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS---FDDTIGIWSGV 444 (536)
Q Consensus 368 ~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s---~dg~I~iwd~~ 444 (536)
..+.+++|+|++..++++++.++.|++||++++ .......+...+.+++|+|++++|++++ .++.|++||+.
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-----SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-----EEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-----eEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence 567999999988655578888999999999875 3445556778899999999999999888 68999999999
Q ss_pred CCCcceEEeccCCCCceeeeeEEEEcCCCCEE-EEEcCCCcEEEEcCCccccceeccCCceeee---------------e
Q 009380 445 NFENTSMIHHNNQTGRWISSFRAIWGWDDSCV-FIGNMTRTVEVISPAQRRSVATLQSPYISAI---------------P 508 (536)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~---------------~ 508 (536)
+++....+.... . ...+.|+|++++| ++++.|+.|++||+.+++.+..+..+..... .
T Consensus 233 ~~~~~~~~~~~~----~--~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (391)
T 1l0q_A 233 TNKITARIPVGP----D--PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPS 306 (391)
T ss_dssp TTEEEEEEECCS----S--EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCB
T ss_pred CCeEEEEEecCC----C--ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccc
Confidence 887776665422 1 2347899999987 5668899999999999988877765432210 1
Q ss_pred eeEeecCCCC-------CEEEEEccCCeEEEEec
Q 009380 509 CRFHAHPHQV-------GTLAGATGGGQVYVWTS 535 (536)
Q Consensus 509 ~~~~~~p~~~-------~~lasgs~Dg~v~iW~~ 535 (536)
..+...+..+ -.+...+.|..+++|++
T Consensus 307 a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 340 (391)
T 1l0q_A 307 ADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDF 340 (391)
T ss_dssp CCEEESCCSSEEETTCCEEEEECCBSCSEEEEEC
T ss_pred cccccccccccccccceEEEEeCCCCceEEEEEC
Confidence 1222222111 34667778899999986
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=3.6e-30 Score=263.32 Aligned_cols=329 Identities=8% Similarity=0.017 Sum_probs=245.7
Q ss_pred ccceeeee---cCCCCcccccccccccc----cccccccceEEeccccc--Ccccccc--ccCCceEEEEEEecCCccEE
Q 009380 183 FNGFKTCK---DEGLGVGSCDLIKGVVK----TEKIEVGSCVDIGSLTL--KPENIAR--IMPGRITQMKFLPCSDVRMV 251 (536)
Q Consensus 183 ~~~v~~~~---~s~~~~~l~~~~~~~~~----~~~~~~dg~v~lw~~~~--~~~~~~~--~~~~~I~~v~~~p~~~~~~l 251 (536)
..++..+. +++++..+......... ...+..++.+.||.++. ....... .+...+.+++|+| ++.++
T Consensus 60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~ 137 (433)
T 3bws_A 60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFID--NTRLA 137 (433)
T ss_dssp TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESS--SSEEE
T ss_pred CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeC--CCeEE
Confidence 34555666 77777665432211111 01234445444554433 2111111 2245677999999 88999
Q ss_pred EEEeCCCcEEEEECCCCCCCCCceE-----EeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCC
Q 009380 252 VAGSKLGNITFWNLDSQQDEDNGIY-----LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEY 325 (536)
Q Consensus 252 ~tg~~dg~v~iwd~~~~~~~~~~~~-----~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~ 325 (536)
++++.++.|++||+.+ +.... .+.+|...|.+++|++++ .++++++.|+.|++||+.++.....+ .+..
T Consensus 138 ~~~~~~~~i~~~d~~~----g~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~ 212 (433)
T 3bws_A 138 IPLLEDEGMDVLDINS----GQTVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTLAYKATVDLTGK 212 (433)
T ss_dssp EEBTTSSSEEEEETTT----CCEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCCEEEEEECSSS
T ss_pred EEeCCCCeEEEEECCC----CeEeeecCcccccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCceEEEEEcCCCC
Confidence 9999999999999987 44444 456889999999999998 89999999999999999987665444 5778
Q ss_pred ceeEEEecCCCCCEE-EEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe--------CCCcEEEEe
Q 009380 326 AVFSLSQQPNNVNTL-YFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS--------TDGTACIWD 396 (536)
Q Consensus 326 ~i~~l~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s--------~dg~i~iwd 396 (536)
.+.+++|+|++ ..+ ++++.++.|++||+++++.+..+.. ...+.+++|+|++ .++++++ .||.|++||
T Consensus 213 ~~~~~~~~~~~-~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 213 WSKILLYDPIR-DLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp SEEEEEEETTT-TEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEE
T ss_pred CeeEEEEcCCC-CEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEE
Confidence 99999999998 555 4555899999999999988777764 4569999999988 5777776 588999999
Q ss_pred CCCCCCCCCCcceeecccCceeEEEEccCCCeE-EEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCE
Q 009380 397 LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC 475 (536)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l-~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 475 (536)
++++ .......|...+.+++|+|+++.+ ++++.|+.|++||+.+++....+.+.. .+ ..++|+|+|++
T Consensus 290 ~~~~-----~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~----~~--~~~~~s~dg~~ 358 (433)
T 3bws_A 290 MDKE-----KLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFD----KP--NTIALSPDGKY 358 (433)
T ss_dssp TTTT-----EEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSS----SE--EEEEECTTSSE
T ss_pred CCCC-----cEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCC----CC--CeEEEcCCCCE
Confidence 9875 344555677789999999999755 566889999999999887776665322 22 34789999999
Q ss_pred EEEEcC---------------CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEc-cCCeEEEEecC
Q 009380 476 VFIGNM---------------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVYVWTSD 536 (536)
Q Consensus 476 l~~gs~---------------dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs-~Dg~v~iW~~d 536 (536)
|++++. ||.|++||..+++.+..+..+. ....++|+| ++.+|++++ .||.|++|+++
T Consensus 359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN---QPTGLDVSP-DNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS---SEEEEEECT-TSCEEEEEETTTTEEEEEEET
T ss_pred EEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC---CCceEEEcC-CCCEEEEEECCCCeEEEEEec
Confidence 888876 5699999999998888877532 235688999 568888776 59999999975
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=6.7e-31 Score=287.54 Aligned_cols=257 Identities=14% Similarity=0.160 Sum_probs=212.7
Q ss_pred ceecccccceeeeecCCCCcccccccccccccccccccceEEeccccc---CccccccccCCceEEEEEEecCCccEEEE
Q 009380 177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL---KPENIARIMPGRITQMKFLPCSDVRMVVA 253 (536)
Q Consensus 177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~---~~~~~~~~~~~~I~~v~~~p~~~~~~l~t 253 (536)
.++.+|.+.|.++.|+|+++.++. ++.||.|.+|++.. ........|.+.|++++|+|..++.+|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~lat----------g~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s 72 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLAT----------CSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILAS 72 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEE----------EETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEE----------EECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEE
Confidence 467899999999999999998884 57889999999852 23345578999999999999323999999
Q ss_pred EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC--CCCEEEEEECCCeEEEEECCCC---eEEEeecCCCcee
Q 009380 254 GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY--CLSKIFTSCYDGLIRLMDAEKE---VFDLVYSSEYAVF 328 (536)
Q Consensus 254 g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~dg~I~vwd~~~~---~~~~~~~~~~~i~ 328 (536)
|+.||.|++||+.++. ...+..+.+|...|.+++|+|+ + .+|++|+.||.|++||+.++ .......|...|.
T Consensus 73 ~s~Dg~I~vwd~~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~ 149 (753)
T 3jro_A 73 CSYDGKVLIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 149 (753)
T ss_dssp EETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEE
T ss_pred EeCCCeEEEEECCCCc--ccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceE
Confidence 9999999999998721 1267788899999999999999 7 99999999999999999876 3345567889999
Q ss_pred EEEecCC------------CCCEEEEEECCCeEEEEECCCCc----cceeEeccCCCeEEEEEecCC--CCEEEEEeCCC
Q 009380 329 SLSQQPN------------NVNTLYFGEGQGGLNIWDVRSRK----SATEWLLHEARINTIDFNPRN--PNIMATSSTDG 390 (536)
Q Consensus 329 ~l~~~~~------------~~~~l~~g~~dg~i~i~d~~~~~----~~~~~~~h~~~i~~i~~~p~~--~~~l~s~s~dg 390 (536)
+++|+|. ++.++++|+.||.|++||++++. ....+.+|...|.+++|+|++ +.+|++|+.||
T Consensus 150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg 229 (753)
T 3jro_A 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229 (753)
T ss_dssp EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence 9999995 23799999999999999999873 456677899999999999983 47999999999
Q ss_pred cEEEEeCCCCCCCC-CCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 009380 391 TACIWDLRSMATDK-PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF 446 (536)
Q Consensus 391 ~i~iwdl~~~~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~ 446 (536)
.|++||++++.... ........|...|++++|+|+|.+|++++.||.|++||+...
T Consensus 230 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 99999999864211 122333468899999999999999999999999999998753
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=3.2e-30 Score=256.94 Aligned_cols=284 Identities=14% Similarity=0.106 Sum_probs=208.6
Q ss_pred ecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEE-EEEeCC
Q 009380 179 IKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMV-VAGSKL 257 (536)
Q Consensus 179 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l-~tg~~d 257 (536)
+..|.+.|.++.|+|||..++.. ..+ .+++|+...... ....+...+..+++.+ +++++ ++|+.|
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g----------~~~-~~~iw~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~d 80 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILS----------TLK-SFEIYNVHPVAH-IMSQEMRHLSKVRMLH--RTNYVAFVTGVK 80 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEE----------CSS-EEEEEEETTEEE-EEEEECSCCCEEEECT--TSSEEEEECSST
T ss_pred cccCCCceEEEEECCCCCEEEEE----------cCC-EEEEEecCCcce-eeeeecCCeEEEEEcC--CCCEEEEEECCc
Confidence 47899999999999999998854 333 467898643322 2233334688899998 66666 567888
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC-eEEEeecCCCceeEEEecCCC
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE-VFDLVYSSEYAVFSLSQQPNN 336 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~-~~~~~~~~~~~i~~l~~~~~~ 336 (536)
++|+|||+.+ +..+..+. |...|.++.|+++ .++++ .|+.|++||+.++ +....+.. +...+++++
T Consensus 81 ~~v~iWd~~~----~~~~~~~~-~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~-- 147 (355)
T 3vu4_A 81 EVVHIWDDVK----KQDVSRIK-VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN-- 147 (355)
T ss_dssp TEEEEEETTT----TEEEEEEE-CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--
T ss_pred cEEEEEECCC----CcEEEEEE-CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--
Confidence 9999999987 56666665 6679999999875 34444 4889999999887 44333322 444566666
Q ss_pred CCEEEE--EECCCeEEEEECCCCc----------------cceeEeccCCCeEEEEEecCCCCEEEEEeCCCc-EEEEeC
Q 009380 337 VNTLYF--GEGQGGLNIWDVRSRK----------------SATEWLLHEARINTIDFNPRNPNIMATSSTDGT-ACIWDL 397 (536)
Q Consensus 337 ~~~l~~--g~~dg~i~i~d~~~~~----------------~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~-i~iwdl 397 (536)
.++++ |+.+|.|++||++++. .+..+.+|...|++++|+|++ .+|++|+.||+ |++||+
T Consensus 148 -~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 148 -GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp -TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEET
T ss_pred -cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEEC
Confidence 35555 5789999999999865 267888999999999999987 79999999998 999999
Q ss_pred CCCCCCCCCcceee-c-ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC------------------C
Q 009380 398 RSMATDKPEPMKVL-S-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN------------------Q 457 (536)
Q Consensus 398 ~~~~~~~~~~~~~~-~-~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~------------------~ 457 (536)
++++ ....+. + |...|++++|+|+|++|++++.|++|+|||+............. .
T Consensus 226 ~~~~----~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (355)
T 3vu4_A 226 EDGV----LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLS 301 (355)
T ss_dssp TTCC----EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECC
T ss_pred CCCc----EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEec
Confidence 9863 444444 4 99999999999999999999999999999997653211110000 0
Q ss_pred CCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380 458 TGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS 495 (536)
Q Consensus 458 ~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~ 495 (536)
.........++|++++++|++++.||.+++|++..+..
T Consensus 302 ~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 302 VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 00000012378999999999999999999999876543
No 118
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.5e-31 Score=269.01 Aligned_cols=268 Identities=9% Similarity=0.033 Sum_probs=204.4
Q ss_pred cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM 310 (536)
Q Consensus 231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw 310 (536)
+.....|.+|+|+| ||.++|+++.|++|+ |... .. .+.+|...|.+++|+|+| .++.+.+|
T Consensus 12 ~~~~~~v~sv~~Sp--DG~~iASas~D~TV~--d~~~----~~---~l~gh~~~v~~V~FsPdg--------~~~~~~~~ 72 (588)
T 2j04_A 12 KEFEDWKNNLTWAR--DGTLYLTTFPDISIG--QPKY----AK---DINCNSKNLFHVKEFPLE--------FENKLDFE 72 (588)
T ss_dssp CCCSSSSCCEEECT--TSCEEEECSSSEEEE--EECC----CS---CCSSBGGGTEEEEEECCC--------CCCTTTTS
T ss_pred hHhhccEEEEEECC--CCCEEEEEcCCceee--cccc----cc---eecCCCccEEEEEECCCC--------CcceEEEE
Confidence 45568999999999 999999999999999 6443 33 337899999999999987 56666666
Q ss_pred ECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCC-----CeEEEEEecCCCCEEEE
Q 009380 311 DAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA-----RINTIDFNPRNPNIMAT 385 (536)
Q Consensus 311 d~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~-----~i~~i~~~p~~~~~l~s 385 (536)
+.+..... ...+...|.+++|+|+| ..|++++.||.|++||... ++..+. |.. .|.+++|+|+| ++|++
T Consensus 73 ~~~~~~~~-~~~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG-~~LAs 146 (588)
T 2j04_A 73 LAQQNGLL-NSQPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIE-SSIVV 146 (588)
T ss_dssp CCCSSCSS-TTSCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSS-SCEEE
T ss_pred eCCCceEe-ecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCC-CEEEE
Confidence 65433322 22457899999999999 8999999999999999544 555666 665 49999999988 79999
Q ss_pred EeCCCcEEEEeCCCCCCCCC---Cccee----ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc---eEEecc
Q 009380 386 SSTDGTACIWDLRSMATDKP---EPMKV----LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT---SMIHHN 455 (536)
Q Consensus 386 ~s~dg~i~iwdl~~~~~~~~---~~~~~----~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~---~~~~~~ 455 (536)
|+.||+|+|||+..+....+ ....+ .+|...|.+++|+|+| +++++.|++|++||+.+.... .++...
T Consensus 147 gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~ 224 (588)
T 2j04_A 147 GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNA 224 (588)
T ss_dssp EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECC
T ss_pred EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccc
Confidence 99999999999988531111 12222 4678899999999999 888999999999999877643 234211
Q ss_pred CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEee--cCCCCCEEEEEccCCeEEEE
Q 009380 456 NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA--HPHQVGTLAGATGGGQVYVW 533 (536)
Q Consensus 456 ~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~--~p~~~~~lasgs~Dg~v~iW 533 (536)
... .+..++|+ |++|++++ ++.|++||+.+++......+|.... ..+.+ +| ++..|++++.||+ ++|
T Consensus 225 --h~~--~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V--~~va~~~s~-d~~~La~a~edG~-klw 293 (588)
T 2j04_A 225 --SRR--KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENF--HIIPLNHEK-ESTILLMSNKTSY-KVL 293 (588)
T ss_dssp --CSS--CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCC--CEEEETTCS-SCEEEEECSSCEE-EEE
T ss_pred --ccC--cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceE--EEEEeeeCC-CCCEEEEEcCCCC-EEE
Confidence 111 23347788 58999887 6999999999886633332544333 35777 77 5689999999999 999
Q ss_pred ecC
Q 009380 534 TSD 536 (536)
Q Consensus 534 ~~d 536 (536)
..+
T Consensus 294 ~~d 296 (588)
T 2j04_A 294 LED 296 (588)
T ss_dssp ESS
T ss_pred eec
Confidence 864
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-29 Score=259.65 Aligned_cols=241 Identities=11% Similarity=0.034 Sum_probs=192.3
Q ss_pred ccCCceEEEEEEecCCccEE-EEEeCCCcEEEEECC--CCCCCCCceEEec--cCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 232 IMPGRITQMKFLPCSDVRMV-VAGSKLGNITFWNLD--SQQDEDNGIYLFR--THLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 232 ~~~~~I~~v~~~p~~~~~~l-~tg~~dg~v~iwd~~--~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
.|.+.|++++|+| ++++| ++|+.||.|+||++. + +..+..+. .|...|.+++|+|++ .+|++++.||.
T Consensus 100 ~~~~~v~~~~~s~--d~~~l~~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~ 172 (450)
T 2vdu_B 100 PIYSYIRNLRLTS--DESRLIACADSDKSLLVFDVDKTS----KNVLKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGD 172 (450)
T ss_dssp CCCCCEEEEEECT--TSSEEEEEEGGGTEEEEEEECSSS----SSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred ccCCceEEEEEcC--CCCEEEEEECCCCeEEEEECcCCC----CceeeeeecccCCCCceEEEEcCCC-CEEEEEeCCCc
Confidence 3455799999999 99986 899999999999998 5 55666665 677899999999998 99999999999
Q ss_pred EEEEECCCCeEE-----EeecCCCceeEEEecCC---CCCEEEEEECCCeEEEEECCCCcccee-EeccCCCeEEEEEec
Q 009380 307 IRLMDAEKEVFD-----LVYSSEYAVFSLSQQPN---NVNTLYFGEGQGGLNIWDVRSRKSATE-WLLHEARINTIDFNP 377 (536)
Q Consensus 307 I~vwd~~~~~~~-----~~~~~~~~i~~l~~~~~---~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~h~~~i~~i~~~p 377 (536)
|++|++.++... .+.+|...|.+++|+|+ + .+|++|+.|+.|++||+++++.+.. +.+|...|.+++|+
T Consensus 173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s- 250 (450)
T 2vdu_B 173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG- 250 (450)
T ss_dssp EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-
T ss_pred EEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-
Confidence 999999876543 45578899999999998 6 7999999999999999999988877 45899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-------------------------cccCceeEEEEccCCCeEEEE
Q 009380 378 RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-------------------------SHKRAVHSAYFSPSGSSLATT 432 (536)
Q Consensus 378 ~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-------------------------~~~~~v~~l~~sp~g~~l~t~ 432 (536)
++ .+|++++.|+.|++||+++++ ....+. .....|.+++|+|++++|+++
T Consensus 251 d~-~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 325 (450)
T 2vdu_B 251 KD-YLLLSAGGDDKIFAWDWKTGK----NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF 325 (450)
T ss_dssp ST-TEEEEEESSSEEEEEETTTCC----EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEE
T ss_pred CC-CEEEEEeCCCeEEEEECCCCc----EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEE
Confidence 66 799999999999999999864 122221 234578999999999999999
Q ss_pred e-CCCcEEEEeC--CCC---CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC------CCcEEEEcCCc
Q 009380 433 S-FDDTIGIWSG--VNF---ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM------TRTVEVISPAQ 492 (536)
Q Consensus 433 s-~dg~I~iwd~--~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~------dg~I~v~d~~~ 492 (536)
+ .|+.|+||++ ... .....+... ..+ ..++|+|++.++++++. ++.|.+|.+..
T Consensus 326 ~~~d~~i~iw~~~~~~~~~l~~~~~~~~~----~~v--~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 326 VEATKCIIILEMSEKQKGDLALKQIITFP----YNV--ISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp ETTCSEEEEEEECSSSTTCEEEEEEEECS----SCE--EEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ECCCCeEEEEEeccCCCCceeeccEeccC----Cce--EEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 9 8999999999 444 333333221 223 34779996544444443 45588887643
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.8e-30 Score=253.26 Aligned_cols=261 Identities=13% Similarity=0.049 Sum_probs=198.2
Q ss_pred cccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCC-----CCCCceEEe-ccCCC
Q 009380 210 KIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQ-----DEDNGIYLF-RTHLG 283 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~-----~~~~~~~~~-~~h~~ 283 (536)
+++.||.|++||+.... .+.......|.++.|+| + +++|+.|++|++|+..... .....+..+ .+|..
T Consensus 53 sg~~Dg~v~iwd~~~~~-~~~~~~~~~v~~~~~~~--~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (343)
T 3lrv_A 53 CRCEDGALHFTQLKDSK-TITTITTPNPRTGGEHP--A---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSAN 126 (343)
T ss_dssp EEEETTEEEEEEESSSS-CEEEEEEECCCTTCCCC--S---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSS
T ss_pred EECCCCcEEEEECCCCc-EEEEEecCCceeeeeCC--c---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCC
Confidence 67899999999985432 22333367888999999 5 9999999999999876310 013323333 36778
Q ss_pred CEEEEEEec--CCCCEEEEEECCCeEEEEECCCCeEEEee--cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc
Q 009380 284 PISGIVTQQ--YCLSKIFTSCYDGLIRLMDAEKEVFDLVY--SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359 (536)
Q Consensus 284 ~V~~l~~~~--~~~~~l~s~s~dg~I~vwd~~~~~~~~~~--~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~ 359 (536)
.|.+++|+| ++ .+|++++.||+|++||++++...... .+...|.+++|+|++ .+|++|+.||.|++||+++++.
T Consensus 127 ~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~ 204 (343)
T 3lrv_A 127 EIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQ 204 (343)
T ss_dssp CEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTS
T ss_pred CEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCC
Confidence 999999999 88 99999999999999999998776544 345679999999998 8999999999999999999988
Q ss_pred c-eeEec-cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCcee--EEEEccCCCeEEEEeC-
Q 009380 360 A-TEWLL-HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVH--SAYFSPSGSSLATTSF- 434 (536)
Q Consensus 360 ~-~~~~~-h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~--~l~~sp~g~~l~t~s~- 434 (536)
+ ..+.. |...|++++|+|++ .+|++++ |+.|++||+++.+... .......|...+. +++|+|+|++|++++.
T Consensus 205 ~~~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~ 281 (343)
T 3lrv_A 205 ASSRFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGTL-AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE 281 (343)
T ss_dssp CCEECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTCB-SSCCCBC-----CCEEEEECTTSSEEEEEETT
T ss_pred CccEEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcce-eecccccccccccceEEEECCCCCEEEEecCC
Confidence 7 78887 99999999999987 7899999 5599999999864211 1111112334444 6999999999999998
Q ss_pred CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcC---CCCEEEEEcCCCcEEEEcC
Q 009380 435 DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGW---DDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 435 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~g~~l~~gs~dg~I~v~d~ 490 (536)
|+.|+||++......... . ....+.|++ +...+++++.|+.+.++-.
T Consensus 282 d~~i~v~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 282 SNSLTIYKFDKKTKNWTK-------D--EESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp TTEEEEEEECTTTCSEEE-------E--EEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEcccccceEe-------c--CceeEecCccccccceeEEEecCCceEEEEe
Confidence 999999998765443332 1 112255777 7889999999999888753
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=6.9e-29 Score=250.23 Aligned_cols=266 Identities=13% Similarity=0.111 Sum_probs=215.6
Q ss_pred ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEE-EEEECCCeEEEEECCCCeEEEeecCCCc
Q 009380 248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKI-FTSCYDGLIRLMDAEKEVFDLVYSSEYA 326 (536)
Q Consensus 248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l-~s~s~dg~I~vwd~~~~~~~~~~~~~~~ 326 (536)
+.++++++.|+.|++||+.+ +..+..+..|. .+.+++|+|++ .+| ++++.|+.|++||+.+++......+...
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~----~~~~~~~~~~~-~~~~~~~s~dg-~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 75 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTS----NKVTATIPVGS-NPMGAVISPDG-TKVYVANAHSNDVSIIDTATNNVIATVPAGSS 75 (391)
T ss_dssp EEEEEEETTTTEEEEEETTT----TEEEEEEECSS-SEEEEEECTTS-SEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred CEEEEEcCCCCEEEEEECCC----CeEEEEeecCC-CcceEEECCCC-CEEEEECCCCCeEEEEECCCCeEEEEEECCCC
Confidence 35788999999999999987 66777777765 58999999999 665 6777999999999999988877777779
Q ss_pred eeEEEecCCCCCEE-EEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 009380 327 VFSLSQQPNNVNTL-YFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405 (536)
Q Consensus 327 i~~l~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~ 405 (536)
+.+++|+|++ +.| +++..++.|++||+.+++.+..+.. ...+.+++|+|++..++++++.|+.|++||+.+++
T Consensus 76 v~~~~~spdg-~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~---- 149 (391)
T 1l0q_A 76 PQGVAVSPDG-KQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA---- 149 (391)
T ss_dssp EEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE----
T ss_pred ccceEECCCC-CEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc----
Confidence 9999999998 555 4555679999999999988877764 45789999999885455888889999999998753
Q ss_pred CcceeecccCceeEEEEccCCCeE-EEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc---C
Q 009380 406 EPMKVLSHKRAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN---M 481 (536)
Q Consensus 406 ~~~~~~~~~~~v~~l~~sp~g~~l-~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs---~ 481 (536)
......+...+.+++|+|++++| ++++.++.|++||+.+++....+.+.. .+ ..++|+|++++|++++ .
T Consensus 150 -~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~--~~~~~~~~g~~l~~~~~~~~ 222 (391)
T 1l0q_A 150 -VINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA----AP--SGIAVNPEGTKAYVTNVDKY 222 (391)
T ss_dssp -EEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS----EE--EEEEECTTSSEEEEEEECSS
T ss_pred -EEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC----Cc--cceEECCCCCEEEEEecCcC
Confidence 33444445677999999999887 567788999999999887776665422 22 3477999999999888 6
Q ss_pred CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEE-EEEccCCeEEEEecC
Q 009380 482 TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTL-AGATGGGQVYVWTSD 536 (536)
Q Consensus 482 dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~l-asgs~Dg~v~iW~~d 536 (536)
++.|++||+.+++.+..+..+.. ...+.|+| ++.+| ++++.|+.|++||++
T Consensus 223 ~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 223 FNTVSMIDTGTNKITARIPVGPD---PAGIAVTP-DGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp CCEEEEEETTTTEEEEEEECCSS---EEEEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred CCcEEEEECCCCeEEEEEecCCC---ccEEEEcc-CCCEEEEEcCCCCEEEEEECC
Confidence 89999999999988888876442 24678888 45666 788999999999974
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=7.5e-30 Score=257.89 Aligned_cols=295 Identities=14% Similarity=0.081 Sum_probs=199.2
Q ss_pred CCceEEEEEEec-CCccEEEEEeCCCcEEEEECCCCCCCC---C--ceEEeccCCCCEEEEEEe----------------
Q 009380 234 PGRITQMKFLPC-SDVRMVVAGSKLGNITFWNLDSQQDED---N--GIYLFRTHLGPISGIVTQ---------------- 291 (536)
Q Consensus 234 ~~~I~~v~~~p~-~~~~~l~tg~~dg~v~iwd~~~~~~~~---~--~~~~~~~h~~~V~~l~~~---------------- 291 (536)
+...+++.|... .+...|++++.++.|.+|+........ . .......|...+..+.|+
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence 344566777421 133334444457789999765321100 0 000111233444444443
Q ss_pred ----cCCCCEEEEEECCCeEEEEECCCCeEEE------eecCCCceeEEEecC--------CCCCEEEEEECCCeEEEEE
Q 009380 292 ----QYCLSKIFTSCYDGLIRLMDAEKEVFDL------VYSSEYAVFSLSQQP--------NNVNTLYFGEGQGGLNIWD 353 (536)
Q Consensus 292 ----~~~~~~l~s~s~dg~I~vwd~~~~~~~~------~~~~~~~i~~l~~~~--------~~~~~l~~g~~dg~i~i~d 353 (536)
+++ .+|++++.|++|++||+.++.... +.+|...|.+++|+| ++ ++|++|+.|++|+|||
T Consensus 95 ~~~~~~~-~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 95 NSSPVYS-LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWR 172 (393)
T ss_dssp --CCEEE-EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEE
T ss_pred eecCCCC-CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEE
Confidence 333 689999999999999998875432 236899999999987 45 7999999999999999
Q ss_pred CCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCC---------------------cceeec
Q 009380 354 VRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPE---------------------PMKVLS 412 (536)
Q Consensus 354 ~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~---------------------~~~~~~ 412 (536)
++++.++..+..|...|.+++|+|++.++|++|+.||+|++||+++++..... .....+
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence 99988888888899999999999988779999999999999999886421100 011235
Q ss_pred ccCceeEEEEc-cCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC---------Cce----eeeeEEEEcC--CCCEE
Q 009380 413 HKRAVHSAYFS-PSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT---------GRW----ISSFRAIWGW--DDSCV 476 (536)
Q Consensus 413 ~~~~v~~l~~s-p~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~---------~~~----~~~~~~~~s~--~g~~l 476 (536)
|...+.++.|+ |++..|++++.|+++++||+........+...... ... .....+.|++ ++.++
T Consensus 253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (393)
T 4gq1_A 253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFA 332 (393)
T ss_dssp CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEE
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEE
Confidence 78889999987 69999999999999999999876554443211000 000 0011133444 45567
Q ss_pred EEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 477 FIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 477 ~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
++|+.|+.|++||+.+++.+..+..++..+ ..++|+| ++++||+++.|| +.+|.
T Consensus 333 ~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V--~svafsp-dG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 333 TAHSQHGLIQLINTYEKDSNSIPIQLGMPI--VDFCWHQ-DGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp EEETTTTEEEEEETTCTTCCEEEEECSSCE--EEEEECT-TSSEEEEEESSE-EEEEE
T ss_pred EEECCCCEEEEEECCCCcEEEEecCCCCcE--EEEEEcC-CCCEEEEEeCCC-eEEEE
Confidence 888999999999999998888777666543 4789999 689999999877 44444
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.7e-28 Score=250.93 Aligned_cols=279 Identities=10% Similarity=0.015 Sum_probs=228.3
Q ss_pred cceeeeecCCCCcccccccccccccccccccceEEecccccCccc------cccccCCceEEEEEEecCCccEEEEEeCC
Q 009380 184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN------IARIMPGRITQMKFLPCSDVRMVVAGSKL 257 (536)
Q Consensus 184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~------~~~~~~~~I~~v~~~p~~~~~~l~tg~~d 257 (536)
..+.++.|+|++.+++. +..++.|.+||+...... ....|.+.|.+++|+| ++.++++++.|
T Consensus 123 ~~~~~~~~s~~~~~~~~----------~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d 190 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIP----------LLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQA 190 (433)
T ss_dssp SCBCCCEESSSSEEEEE----------BTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGG
T ss_pred CCceEEEEeCCCeEEEE----------eCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCC
Confidence 44668889996666663 356778999997543221 2346788999999999 99999999999
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEE-EEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCC
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIF-TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNN 336 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~-s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~ 336 (536)
+.|++||+.+ ...+..+..|...+.+++|+|++ ..++ +++.|+.|++||+.++...........+.+++|+|++
T Consensus 191 ~~v~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g 265 (433)
T 3bws_A 191 NAVHVFDLKT----LAYKATVDLTGKWSKILLYDPIR-DLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDG 265 (433)
T ss_dssp TEEEEEETTT----CCEEEEEECSSSSEEEEEEETTT-TEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTS
T ss_pred CEEEEEECCC----ceEEEEEcCCCCCeeEEEEcCCC-CEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCC
Confidence 9999999987 67788888999999999999998 6664 5558999999999999887777777889999999998
Q ss_pred CCEEEEEE--------CCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc
Q 009380 337 VNTLYFGE--------GQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM 408 (536)
Q Consensus 337 ~~~l~~g~--------~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~ 408 (536)
+.+++++ .||.|++||+++++.+..+ .|...+.+++|+|++..++++++.|+.|++||+.++ ...
T Consensus 266 -~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-----~~~ 338 (433)
T 3bws_A 266 -KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-----KVQ 338 (433)
T ss_dssp -SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT-----EEE
T ss_pred -CEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC-----cEE
Confidence 6788777 5889999999998876665 366689999999988667788899999999999874 344
Q ss_pred eeecccCceeEEEEccCCCeEEEEeC---------------CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCC
Q 009380 409 KVLSHKRAVHSAYFSPSGSSLATTSF---------------DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDD 473 (536)
Q Consensus 409 ~~~~~~~~v~~l~~sp~g~~l~t~s~---------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 473 (536)
....+...+.+++|+|+|++|++++. ||.|++||+.+++....+... ..+ ..++|+|+|
T Consensus 339 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~----~~~--~~~~~s~dg 412 (433)
T 3bws_A 339 KSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG----NQP--TGLDVSPDN 412 (433)
T ss_dssp EEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS----SSE--EEEEECTTS
T ss_pred EEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC----CCC--ceEEEcCCC
Confidence 45567888999999999998888876 579999999988877776542 122 347899999
Q ss_pred CEEEEEcC-CCcEEEEcCCc
Q 009380 474 SCVFIGNM-TRTVEVISPAQ 492 (536)
Q Consensus 474 ~~l~~gs~-dg~I~v~d~~~ 492 (536)
++|++++. |+.|++|++.+
T Consensus 413 ~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 413 RYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CEEEEEETTTTEEEEEEETT
T ss_pred CEEEEEECCCCeEEEEEecC
Confidence 99988765 99999999764
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=2.7e-28 Score=233.96 Aligned_cols=285 Identities=11% Similarity=0.075 Sum_probs=194.5
Q ss_pred eEEEEEEecCCc-cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE-EEEC--
Q 009380 237 ITQMKFLPCSDV-RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR-LMDA-- 312 (536)
Q Consensus 237 I~~v~~~p~~~~-~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~-vwd~-- 312 (536)
+.++.|-..... .-|++++ ...|++|+..+. ...+.++++..|..+|..|.+.|+..++++.+-..=.+. ++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDA-WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSS-SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCC-ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 555656442111 2466666 469999999873 123789999999999999999998756655553322211 1111
Q ss_pred --CC---CeEEEeecCCCceeEEEecCCCCCEEEEEE--CCCeEEEEECC-CCccceeEeccCCCeEEEEEec---CCCC
Q 009380 313 --EK---EVFDLVYSSEYAVFSLSQQPNNVNTLYFGE--GQGGLNIWDVR-SRKSATEWLLHEARINTIDFNP---RNPN 381 (536)
Q Consensus 313 --~~---~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~--~dg~i~i~d~~-~~~~~~~~~~h~~~i~~i~~~p---~~~~ 381 (536)
+. +.....-++...|.++ +++ +++.+++ .|+.|++|++. +++.+..+.+|...++.++|+| ++ .
T Consensus 120 spd~~~~~~~l~s~g~~~~v~~l---~~g-~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~-~ 194 (356)
T 2w18_A 120 SSDDESEKQVLLKSGNIKAVLGL---TKR-RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQ-E 194 (356)
T ss_dssp ------CCEEEEEEEEEEEEEEE---TTT-EEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETST-T
T ss_pred CCCccccccEEEeCCCeEEEEec---CCC-cEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCC-c
Confidence 10 1222222333344444 444 4444433 49999999994 5788888889999999999998 44 6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCcceeecc---cCceeEEEEccCCCeE------------EEEeCCCcEEEEeCCCC
Q 009380 382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSH---KRAVHSAYFSPSGSSL------------ATTSFDDTIGIWSGVNF 446 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~---~~~v~~l~~sp~g~~l------------~t~s~dg~I~iwd~~~~ 446 (536)
+|++++.|++|+|||+.+++ ....+.+| ...+.+++|+|+|.++ ++|+.|++|++||..++
T Consensus 195 ~LaSgS~D~TIkIWDl~TGk----~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg 270 (356)
T 2w18_A 195 ALLGTTIMNNIVIWNLKTGQ----LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT 270 (356)
T ss_dssp EEEEEETTSEEEEEETTTCC----EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred eEEEecCCCcEEEEECCCCc----EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence 99999999999999999864 33444443 3467788999999876 56788999999999988
Q ss_pred CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEcc
Q 009380 447 ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 526 (536)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~ 526 (536)
+.+..+....+.++....+...+ ++.++++|+.|++|+|||+.+++++.++.+|+...+ ..++|+| ++.+|++|+.
T Consensus 271 k~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vv-s~vafSP-DG~~LaSGS~ 346 (356)
T 2w18_A 271 LSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHW-SFVKWSG-TDSHLLAGQK 346 (356)
T ss_dssp EEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCC-CEEEECS-SSSEEEEECT
T ss_pred EEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeE-EEEEECC-CCCEEEEEEC
Confidence 77665532112222111222333 377899999999999999999999999988766554 3478999 6799999999
Q ss_pred CCeEEEEecC
Q 009380 527 GGQVYVWTSD 536 (536)
Q Consensus 527 Dg~v~iW~~d 536 (536)
|++|+|||+.
T Consensus 347 D~TIklWd~~ 356 (356)
T 2w18_A 347 DGNIFVYHYS 356 (356)
T ss_dssp TSCEEEEEEC
T ss_pred CCcEEEecCC
Confidence 9999999963
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.9e-28 Score=247.59 Aligned_cols=245 Identities=14% Similarity=0.047 Sum_probs=172.2
Q ss_pred cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC-CCceEEeccCCCCEEEEEEec--------CCCCEEEEEEC
Q 009380 233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE-DNGIYLFRTHLGPISGIVTQQ--------YCLSKIFTSCY 303 (536)
Q Consensus 233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~~~--------~~~~~l~s~s~ 303 (536)
|...+....+.+ ++.+|++|+.|++|+|||+...... ...+..+.+|.+.|++++|+| ++ ++|++|+.
T Consensus 88 ~~~~~~~~~~~~--~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~ 164 (393)
T 4gq1_A 88 HDGDGNVNSSPV--YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGD 164 (393)
T ss_dssp ---------CCE--EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEET
T ss_pred cCCCcceeecCC--CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEEC
Confidence 344445555556 7789999999999999999863210 112345689999999999998 66 89999999
Q ss_pred CCeEEEEECCCC-eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee--------------------
Q 009380 304 DGLIRLMDAEKE-VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE-------------------- 362 (536)
Q Consensus 304 dg~I~vwd~~~~-~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~-------------------- 362 (536)
|++|+|||+.++ .....+.|...+.+++|+|++.++|++|+.||+|++||+++++....
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 999999999765 45567789999999999999867899999999999999998754322
Q ss_pred -----EeccCCCeEEEEEe-cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC------------------cee
Q 009380 363 -----WLLHEARINTIDFN-PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR------------------AVH 418 (536)
Q Consensus 363 -----~~~h~~~i~~i~~~-p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~------------------~v~ 418 (536)
..+|...+.++.|. |++ ..|++++.|+++++||+..... ...+..|.. ...
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANND----YNEISDSTMKLGPKNLLPNVQGISLFPSLL 319 (393)
T ss_dssp C------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-----------------------CCSCSEEEECSSCCSS
T ss_pred eeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCC----CceEeeecCccccEEEccccccccccCcce
Confidence 13577889999998 555 7999999999999999987542 111112222 222
Q ss_pred EEEEcc--CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380 419 SAYFSP--SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA 491 (536)
Q Consensus 419 ~l~~sp--~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~ 491 (536)
.+.|+| ++.++++|+.||.|+|||+.+++....+.... ..+. .++|+|||++|++++.+| +.+|.+.
T Consensus 320 ~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~---~~V~--svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 320 GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG---MPIV--DFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS---SCEE--EEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC---CcEE--EEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 334444 34466778889999999999888776653222 2333 488999999999998766 6566543
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=2.7e-26 Score=220.16 Aligned_cols=244 Identities=10% Similarity=-0.037 Sum_probs=172.9
Q ss_pred ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-------cccccccCCceEEEEEEecCC
Q 009380 175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-------ENIARIMPGRITQMKFLPCSD 247 (536)
Q Consensus 175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-------~~~~~~~~~~I~~v~~~p~~~ 247 (536)
....+.+|...|..+.+.||..-|....=+.+.+ -.++.+...+ ..+..+|...|.++ + +
T Consensus 78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~--~ 144 (356)
T 2w18_A 78 KLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEI--------REIRALFCSSDDESEKQVLLKSGNIKAVLGL---T--K 144 (356)
T ss_dssp EEEEEECCSSCEEEECCCTTCCSCEEEEECSSSE--------EEEEEECC------CCEEEEEEEEEEEEEEE---T--T
T ss_pred eeEEEeccCceeEEEEEcCcccceeeeeeccccc--------cceEEEEECCCccccccEEEeCCCeEEEEec---C--C
Confidence 4567888889999999999887766332122211 0111111111 11222333334433 3 5
Q ss_pred ccEEEEEe--CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec---CCCCEEEEEECCCeEEEEECCCCeEEEeec
Q 009380 248 VRMVVAGS--KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ---YCLSKIFTSCYDGLIRLMDAEKEVFDLVYS 322 (536)
Q Consensus 248 ~~~l~tg~--~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~ 322 (536)
++++.+++ .|+.|++|++... +..+..+..|...+..++|++ ++ .+|++++.|++|+|||+.++++...+.
T Consensus 145 g~lv~ss~~g~d~~V~~~~~s~d---G~~~~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk~l~tL~ 220 (356)
T 2w18_A 145 RRLVSSSGTLSDQQVEVMTFAED---GGGKENQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQLLKKMH 220 (356)
T ss_dssp TEEEEEESSSTTCEEEEEEECTT---SCEEEEEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CcEEEecccCCCCcEEEEEECCC---CceeeeeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCcEEEEEc
Confidence 66666643 5999999999643 567778889999999999998 56 899999999999999999998766553
Q ss_pred -CC---CceeEEEecCCCCCEE------------EEEECCCeEEEEECCCCccceeE-----eccCCCeEEEEEecCCCC
Q 009380 323 -SE---YAVFSLSQQPNNVNTL------------YFGEGQGGLNIWDVRSRKSATEW-----LLHEARINTIDFNPRNPN 381 (536)
Q Consensus 323 -~~---~~i~~l~~~~~~~~~l------------~~g~~dg~i~i~d~~~~~~~~~~-----~~h~~~i~~i~~~p~~~~ 381 (536)
|. ..+.+++|+|++ .++ ++|+.|++|++||..+++.+..+ .+|...+.+.+++ + .
T Consensus 221 g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g-~ 296 (356)
T 2w18_A 221 IDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--D-H 296 (356)
T ss_dssp CCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--T-T
T ss_pred CCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--C-C
Confidence 32 367788999988 554 56888999999999999887665 3666665555554 4 6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCcee-EEEEccCCCeEEEEeCCCcEEEEeC
Q 009380 382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVH-SAYFSPSGSSLATTSFDDTIGIWSG 443 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~-~l~~sp~g~~l~t~s~dg~I~iwd~ 443 (536)
++++++.|++|+|||+.+++ ....+.+|...+. +++|+|+|++|++|+.|++|+|||+
T Consensus 297 ~lASgS~DgTIkIWDl~tGk----~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 297 CAAAILTSGTIAIWDLLLGQ----CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEEETTSCEEEEETTTCS----EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEEcCCCcEEEEECCCCc----EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 89999999999999999864 3444456877655 6899999999999999999999985
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=2e-25 Score=234.18 Aligned_cols=315 Identities=9% Similarity=0.033 Sum_probs=229.9
Q ss_pred ecCCCCcccccccccccccccccccceEEecccccCcc-ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEEC--C
Q 009380 190 KDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNL--D 266 (536)
Q Consensus 190 ~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~--~ 266 (536)
.+++++.+++ ..+.++.|.+||...... ..+..+ ..+.+++|+| ++++|++++.|+.|.+||+ .
T Consensus 144 ~~~p~~~~~v----------s~~~d~~V~v~D~~t~~~~~~i~~g-~~~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~ 210 (543)
T 1nir_A 144 DLDLPNLFSV----------TLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSA--SGRYLLVIGRDARIDMIDLWAK 210 (543)
T ss_dssp CCCGGGEEEE----------EEGGGTEEEEEETTTCCEEEEEECS-TTEEEEEECT--TSCEEEEEETTSEEEEEETTSS
T ss_pred ccCCCCEEEE----------EEcCCCeEEEEECCCceEEEEEecC-cccceEEECC--CCCEEEEECCCCeEEEEECcCC
Confidence 3677777666 346788999999754432 222222 2389999999 9999999999999999999 5
Q ss_pred CCCCCCCceEEeccCCCCEEEEEEec----CCCCEEEEEEC-CCeEEEEECCCCeEEEeecC------------CCceeE
Q 009380 267 SQQDEDNGIYLFRTHLGPISGIVTQQ----YCLSKIFTSCY-DGLIRLMDAEKEVFDLVYSS------------EYAVFS 329 (536)
Q Consensus 267 ~~~~~~~~~~~~~~h~~~V~~l~~~~----~~~~~l~s~s~-dg~I~vwd~~~~~~~~~~~~------------~~~i~~ 329 (536)
+ ...+..+. +...+..++|+| ++ ++|+++++ +++|.+||..++++...... ...+.+
T Consensus 211 t----~~~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~ 284 (543)
T 1nir_A 211 E----PTKVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA 284 (543)
T ss_dssp S----CEEEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred C----CcEEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEE
Confidence 4 56666666 455689999999 98 88888885 89999999998876554432 236889
Q ss_pred EEecCCCCCEEEEEECCCeEEEEECCCCccce--eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380 330 LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSAT--EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407 (536)
Q Consensus 330 l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~ 407 (536)
+.++|++..++++...++.|.+||+.+.+.+. .+ .+...+.++.|+|++..+++++..+++|.+||+.+++ ..
T Consensus 285 i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~----l~ 359 (543)
T 1nir_A 285 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR----LS 359 (543)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE----EE
T ss_pred EEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe----EE
Confidence 99999886777778889999999999876654 33 3667788999999985455566678999999999864 22
Q ss_pred ceee----cccCceeEEEEccC-CCeEEEEe-CCCcEEEEeCCC-------CCcceEEeccCCCCceeeeeEEEEcCCCC
Q 009380 408 MKVL----SHKRAVHSAYFSPS-GSSLATTS-FDDTIGIWSGVN-------FENTSMIHHNNQTGRWISSFRAIWGWDDS 474 (536)
Q Consensus 408 ~~~~----~~~~~v~~l~~sp~-g~~l~t~s-~dg~I~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 474 (536)
..+. .|.+....+ ++|+ +..++++. .|++|.+||+.+ ++.+.++...... .+.+.++|+++
T Consensus 360 ~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~-----~~~v~~~pdg~ 433 (543)
T 1nir_A 360 ALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG-----SLFIKTHPKSS 433 (543)
T ss_dssp EEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-----CCCEECCTTCC
T ss_pred EeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC-----ceEEEcCCCCC
Confidence 2222 254444333 5776 66666665 589999999988 6766766532211 12266899999
Q ss_pred EEEEEc-------CCCcEEEEcCCccccc-eecc-------CCceeeeeeeEeecCCCCCEEEEEc-----cCCeEEEEe
Q 009380 475 CVFIGN-------MTRTVEVISPAQRRSV-ATLQ-------SPYISAIPCRFHAHPHQVGTLAGAT-----GGGQVYVWT 534 (536)
Q Consensus 475 ~l~~gs-------~dg~I~v~d~~~~~~~-~~l~-------~~~~~~~~~~~~~~p~~~~~lasgs-----~Dg~v~iW~ 534 (536)
+|++++ .++.|.|||+.+++.. ..+. ..+. .....+.|+| +|..|+.+. .|+.|.|||
T Consensus 434 ~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~-~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 434 HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA-KRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC-CEEEEEEECS-SSSEEEEEEECCTTSCCEEEEEE
T ss_pred cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCC-CceEeccCCC-CCCEEEEEeecCCCCCCeEEEEE
Confidence 999987 2679999999999877 3331 1122 2235788999 568777652 479999999
Q ss_pred cC
Q 009380 535 SD 536 (536)
Q Consensus 535 ~d 536 (536)
.+
T Consensus 512 ~~ 513 (543)
T 1nir_A 512 DK 513 (543)
T ss_dssp TT
T ss_pred CC
Confidence 63
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.3e-25 Score=228.25 Aligned_cols=278 Identities=11% Similarity=0.011 Sum_probs=210.3
Q ss_pred eEEeccc--ccCcc---ccccccCCceEEEEEEecC------------CccEEEEEeCC------CcEEEEECCCCCCCC
Q 009380 216 CVDIGSL--TLKPE---NIARIMPGRITQMKFLPCS------------DVRMVVAGSKL------GNITFWNLDSQQDED 272 (536)
Q Consensus 216 ~v~lw~~--~~~~~---~~~~~~~~~I~~v~~~p~~------------~~~~l~tg~~d------g~v~iwd~~~~~~~~ 272 (536)
.++|||+ ..... ....+|...+..+++++.. .+..|+.++.+ +.|++||+..
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g----- 168 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG----- 168 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-----
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-----
Confidence 8999998 54432 2246677777777776410 15566666554 7999999973
Q ss_pred CceEEeccCCCCEEEEEEecCCCCEEEEEECCC---eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEE-EEECCCe
Q 009380 273 NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG---LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLY-FGEGQGG 348 (536)
Q Consensus 273 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg---~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~-~g~~dg~ 348 (536)
.....+..|...|.+++|+|++ ++|++++.++ .|++||+.+++...+..+...+.+++|+|++ +.|+ +++.++.
T Consensus 169 ~~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg-~~la~~~~~~g~ 246 (415)
T 2hqs_A 169 YNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG-SKLAFALSKTGS 246 (415)
T ss_dssp CSCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTS-SEEEEEECTTSS
T ss_pred CCCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCC-CEEEEEEecCCC
Confidence 4567778899999999999999 9999999885 9999999999888888888899999999999 5555 6666554
Q ss_pred --EEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC-CC--cEEEEeCCCCCCCCCCcceeecccCceeEEEEc
Q 009380 349 --LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST-DG--TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFS 423 (536)
Q Consensus 349 --i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~-dg--~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~s 423 (536)
|++||+.+++. ..+..|...+.+++|+|++ ..|++++. ++ .|++||+.+++ ...+..+...+.+++|+
T Consensus 247 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~-----~~~l~~~~~~~~~~~~s 319 (415)
T 2hqs_A 247 LNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGA-----PQRITWEGSQNQDADVS 319 (415)
T ss_dssp CEEEEEETTTCCE-EECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSC-----CEECCCSSSEEEEEEEC
T ss_pred ceEEEEECCCCCE-EeCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCC-----EEEEecCCCcccCeEEC
Confidence 99999998765 5666788899999999988 56666664 45 67777888753 33344567789999999
Q ss_pred cCCCeEEEEeCC---CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC---cEEEEcCCccccce
Q 009380 424 PSGSSLATTSFD---DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR---TVEVISPAQRRSVA 497 (536)
Q Consensus 424 p~g~~l~t~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg---~I~v~d~~~~~~~~ 497 (536)
|+|++|++++.+ ..|.+||+.+++... +... . ....+.|+|+|++|++++.++ .|++||+.++ ...
T Consensus 320 pdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~---~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~-~~~ 391 (415)
T 2hqs_A 320 SDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSST---F---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKA 391 (415)
T ss_dssp TTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCS---S---SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-CEE
T ss_pred CCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCC---C---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC-cEE
Confidence 999999988864 579999998876532 2111 1 233478999999999888776 7999998754 566
Q ss_pred eccCCceeeeeeeEeecCCC
Q 009380 498 TLQSPYISAIPCRFHAHPHQ 517 (536)
Q Consensus 498 ~l~~~~~~~~~~~~~~~p~~ 517 (536)
.+..+...+ ...+|+|..
T Consensus 392 ~l~~~~~~v--~~~~~~~~~ 409 (415)
T 2hqs_A 392 RLPATDGQV--KFPAWSPYL 409 (415)
T ss_dssp ECCCSSSEE--EEEEECCCC
T ss_pred EeeCCCCCC--cCCcccccc
Confidence 777655444 367888843
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=7.1e-25 Score=229.96 Aligned_cols=277 Identities=12% Similarity=0.091 Sum_probs=220.4
Q ss_pred EEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC--CCCeEE
Q 009380 241 KFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA--EKEVFD 318 (536)
Q Consensus 241 ~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~--~~~~~~ 318 (536)
+|+| ++.++++++.+++|.+||..+ +..+..+..+.. +.+++|+|++ ++|++++.|++|.+||+ .++...
T Consensus 144 ~~~p--~~~~~vs~~~d~~V~v~D~~t----~~~~~~i~~g~~-~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~~~ 215 (543)
T 1nir_A 144 DLDL--PNLFSVTLRDAGQIALVDGDS----KKIVKVIDTGYA-VHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKV 215 (543)
T ss_dssp CCCG--GGEEEEEEGGGTEEEEEETTT----CCEEEEEECSTT-EEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEE
T ss_pred ccCC--CCEEEEEEcCCCeEEEEECCC----ceEEEEEecCcc-cceEEECCCC-CEEEEECCCCeEEEEECcCCCCcEE
Confidence 3788 889999999999999999987 677778774333 8999999999 99999999999999999 787777
Q ss_pred EeecCCCceeEEEecC----CCCCEEEEEE-CCCeEEEEECCCCccceeEec----------cC-CCeEEEEEecCCCCE
Q 009380 319 LVYSSEYAVFSLSQQP----NNVNTLYFGE-GQGGLNIWDVRSRKSATEWLL----------HE-ARINTIDFNPRNPNI 382 (536)
Q Consensus 319 ~~~~~~~~i~~l~~~~----~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~----------h~-~~i~~i~~~p~~~~~ 382 (536)
....+...+..++|+| ++ +++++++ .+++|.+||..+++++..+.. |. ..+.++.++|+++.+
T Consensus 216 ~~i~~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 216 AEIKIGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp EEEECCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred EEEecCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 6666777889999999 88 7888777 589999999999998887764 22 378999999988888
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEEeccC--CCC
Q 009380 383 MATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMIHHNN--QTG 459 (536)
Q Consensus 383 l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~--~~~ 459 (536)
+++...++.|.+||+.+.+. .......+...+.++.|+|+|++|++++ .+++|.+||+.+++....+.... ..+
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~---l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g 371 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDN---LTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 371 (543)
T ss_dssp EEEETTTTEEEEEECTTSSS---CEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCT
T ss_pred EEEECCCCeEEEEEecCCCc---ceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCC
Confidence 89999999999999987531 1122445677889999999999877655 58899999999998877775321 111
Q ss_pred ceeeeeEEEEcCC-CCEEEEEc-CCCcEEEEcCCc-------cccceeccCCceeeeeeeEeecCCCCCEEEEEc-----
Q 009380 460 RWISSFRAIWGWD-DSCVFIGN-MTRTVEVISPAQ-------RRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT----- 525 (536)
Q Consensus 460 ~~~~~~~~~~s~~-g~~l~~gs-~dg~I~v~d~~~-------~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs----- 525 (536)
.... + ++|+ +.+++++. .|+.|.|||..+ ++++.++..+.... ..+.+|| ++.+|++++
T Consensus 372 ~g~~---~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~--~~v~~~p-dg~~l~v~~~~~~~ 444 (543)
T 1nir_A 372 RGAN---F-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS--LFIKTHP-KSSHLYVDTTFNPD 444 (543)
T ss_dssp TCEE---E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC--CCEECCT-TCCEEEECCTTCSS
T ss_pred CCcc---c-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCc--eEEEcCC-CCCcEEEecCCCCC
Confidence 1111 1 4676 55666665 579999999988 78889988765443 3578899 679999987
Q ss_pred --cCCeEEEEecC
Q 009380 526 --GGGQVYVWTSD 536 (536)
Q Consensus 526 --~Dg~v~iW~~d 536 (536)
.++.|.|||++
T Consensus 445 ~~~~~~v~v~d~~ 457 (543)
T 1nir_A 445 ARISQSVAVFDLK 457 (543)
T ss_dssp HHHHTCEEEEETT
T ss_pred cccCceEEEEECC
Confidence 37899999975
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=5e-25 Score=223.97 Aligned_cols=277 Identities=13% Similarity=0.056 Sum_probs=210.8
Q ss_pred CceEEEEEEecCCc-cEEEEEe----CCC----cEEEEEC--CCCCCCCCce--EEeccCCCCEEEEEEecC--------
Q 009380 235 GRITQMKFLPCSDV-RMVVAGS----KLG----NITFWNL--DSQQDEDNGI--YLFRTHLGPISGIVTQQY-------- 293 (536)
Q Consensus 235 ~~I~~v~~~p~~~~-~~l~tg~----~dg----~v~iwd~--~~~~~~~~~~--~~~~~h~~~V~~l~~~~~-------- 293 (536)
..+....|.+ .+ .++++|+ .+| .|+|||+ .+ +..+ ..+.+|...+..+++++.
T Consensus 63 ~~~~~~~w~~--~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 136 (415)
T 2hqs_A 63 QEVQPAAWSA--LGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP----GTVLAQNSYKVNKQWLRYAGHTASDEVFEKLT 136 (415)
T ss_dssp GGCCHHHHHT--TTCCEEEEEEEEECTTSCEEEEEEEEECSSST----TCEEEEEEEEECGGGHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHh--cCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC----CCEEeeeEEEcChhHHHHHHHHHHHHHHHHHc
Confidence 4566777777 44 5666776 467 8999999 76 4555 458888888888877752
Q ss_pred ------CCCEEEEEECC------CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC---eEEEEECCCCc
Q 009380 294 ------CLSKIFTSCYD------GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG---GLNIWDVRSRK 358 (536)
Q Consensus 294 ------~~~~l~s~s~d------g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg---~i~i~d~~~~~ 358 (536)
+ ..++.++.+ +.|++||+..+....+..|...+.+++|+|++ +.|++++.++ .|++||+.+++
T Consensus 137 g~~~~~~-~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~ 214 (415)
T 2hqs_A 137 GIKGAFR-TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGA 214 (415)
T ss_dssp SSCCCTT-CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCC
T ss_pred CCCCcCC-CEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCc
Confidence 4 566666654 79999999987777778889999999999998 7888888775 99999999887
Q ss_pred cceeEeccCCCeEEEEEecCCCCEEEEEeCCCc--EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC-C
Q 009380 359 SATEWLLHEARINTIDFNPRNPNIMATSSTDGT--ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF-D 435 (536)
Q Consensus 359 ~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~--i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~-d 435 (536)
.. .+..|...+.+++|+|++..++++++.++. |++||+.++ ....+..|...+.+++|+|+|++|++++. +
T Consensus 215 ~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~-----~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~ 288 (415)
T 2hqs_A 215 VR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-----QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA 288 (415)
T ss_dssp EE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-----CEEECCCCSSCEEEEEECTTSSEEEEEECTT
T ss_pred EE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC-----CEEeCcCCCCcccceEECCCCCEEEEEECCC
Confidence 64 566788899999999998544447776665 999999875 33455678889999999999999998886 4
Q ss_pred C--cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC---CcEEEEcCCccccceeccCCceeeeeee
Q 009380 436 D--TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT---RTVEVISPAQRRSVATLQSPYISAIPCR 510 (536)
Q Consensus 436 g--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d---g~I~v~d~~~~~~~~~l~~~~~~~~~~~ 510 (536)
+ .|.+||+.+++...... .+..+ ..+.|+|+|++|++++.+ ..|.+||+.+++. ..+..+. ....
T Consensus 289 g~~~i~~~d~~~~~~~~l~~----~~~~~--~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~---~~~~ 358 (415)
T 2hqs_A 289 GRPQVYKVNINGGAPQRITW----EGSQN--QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF---LDET 358 (415)
T ss_dssp SSCEEEEEETTSSCCEECCC----SSSEE--EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS---SCEE
T ss_pred CCcEEEEEECCCCCEEEEec----CCCcc--cCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC---CcCC
Confidence 4 68888988765332211 12223 347899999999888764 5899999998865 3454433 2346
Q ss_pred EeecCCCCCEEEEEccCC---eEEEEecC
Q 009380 511 FHAHPHQVGTLAGATGGG---QVYVWTSD 536 (536)
Q Consensus 511 ~~~~p~~~~~lasgs~Dg---~v~iW~~d 536 (536)
++|+| ++.+|++++.++ .|++||++
T Consensus 359 ~~~sp-dg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 359 PSLAP-NGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EEECT-TSSEEEEEEEETTEEEEEEEETT
T ss_pred eEEcC-CCCEEEEEEcCCCccEEEEEECC
Confidence 88999 678898888777 79999874
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=5.3e-23 Score=202.09 Aligned_cols=280 Identities=13% Similarity=0.112 Sum_probs=196.3
Q ss_pred EEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC-CCeEEEEECCCCeE-E
Q 009380 241 KFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY-DGLIRLMDAEKEVF-D 318 (536)
Q Consensus 241 ~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~-dg~I~vwd~~~~~~-~ 318 (536)
.|.+. .+..+++++.++.|.+||+.+ +.....+..+...+ +++|+|++ +++++++. ++.|.+||+.++.. .
T Consensus 4 ~~~~~-~~~~~v~~~~~~~v~~~d~~~----~~~~~~~~~~~~~~-~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~~ 76 (331)
T 3u4y_A 4 MFQTT-SNFGIVVEQHLRRISFFSTDT----LEILNQITLGYDFV-DTAITSDC-SNVVVTSDFCQTLVQIETQLEPPKV 76 (331)
T ss_dssp ---CC-CCEEEEEEGGGTEEEEEETTT----CCEEEEEECCCCEE-EEEECSSS-CEEEEEESTTCEEEEEECSSSSCEE
T ss_pred eEcCC-CCEEEEEecCCCeEEEEeCcc----cceeeeEEccCCcc-eEEEcCCC-CEEEEEeCCCCeEEEEECCCCceeE
Confidence 34441 445577888899999999987 56666666666677 99999999 76666665 89999999998875 4
Q ss_pred EeecC-CCceeEEEecCCCCCEEEEEECCC---eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCc-EE
Q 009380 319 LVYSS-EYAVFSLSQQPNNVNTLYFGEGQG---GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGT-AC 393 (536)
Q Consensus 319 ~~~~~-~~~i~~l~~~~~~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~-i~ 393 (536)
..... ..+..+++|+|++ ++++++..++ .|.+||+.+++.+..+.. .....+++|+|++..+++++..++. |.
T Consensus 77 ~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~ 154 (331)
T 3u4y_A 77 VAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVR 154 (331)
T ss_dssp EEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEE
T ss_pred EecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEE
Confidence 44444 4444449999998 7777555553 899999999988777764 4567999999998667777777788 99
Q ss_pred EEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCc---ceEEeccCCCCceeeeeEEEE
Q 009380 394 IWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFEN---TSMIHHNNQTGRWISSFRAIW 469 (536)
Q Consensus 394 iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 469 (536)
+|++...................+..++|+|+|+++++++ .++.|.+||+.+++. +..+.... . ...++|
T Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~----~--~~~~~~ 228 (331)
T 3u4y_A 155 RFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNN----L--PGTIVV 228 (331)
T ss_dssp EEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSS----C--CCCEEE
T ss_pred EEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCC----C--CceEEE
Confidence 9999853210000012224456689999999999665554 688999999998887 55554321 1 123779
Q ss_pred cCCCCEEEEEc-CCCcEEEEcCCcccc--ceeccCC----cee-eeeeeEeecCCCCCEEE-EEccCCeEEEEecC
Q 009380 470 GWDDSCVFIGN-MTRTVEVISPAQRRS--VATLQSP----YIS-AIPCRFHAHPHQVGTLA-GATGGGQVYVWTSD 536 (536)
Q Consensus 470 s~~g~~l~~gs-~dg~I~v~d~~~~~~--~~~l~~~----~~~-~~~~~~~~~p~~~~~la-sgs~Dg~v~iW~~d 536 (536)
+|+|++|++++ .++.|.+||..+++. +..+... ... .....++|+| ++.+|+ ++..++.|.|||++
T Consensus 229 spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 229 SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK-TETKLFISANISRELKVFTIS 303 (331)
T ss_dssp CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC-CCCEEEEecCCCCcEEEEEec
Confidence 99999877665 467899999998866 3333221 100 0012468898 557664 55667799999974
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.2e-23 Score=230.00 Aligned_cols=318 Identities=8% Similarity=-0.003 Sum_probs=221.2
Q ss_pred cceeeeecCCCCcccccccccccccccccc-cc-----eEEecccccCcc-ccccccC----------------------
Q 009380 184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEV-GS-----CVDIGSLTLKPE-NIARIMP---------------------- 234 (536)
Q Consensus 184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~-dg-----~v~lw~~~~~~~-~~~~~~~---------------------- 234 (536)
..+..+.|+|||+.++.. +. ++ .|.+|++..... .+...+.
T Consensus 37 ~~~~~~~~SpdG~~la~~----------~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFL----------RGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIA 106 (741)
T ss_dssp CCCEEEEECTTSSEEEEE----------ECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------
T ss_pred CCCCCceEecCCCEEEEE----------eccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhc
Confidence 467899999999999865 22 44 899999754432 2222222
Q ss_pred --CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380 235 --GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA 312 (536)
Q Consensus 235 --~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~ 312 (536)
..|.+++|+| ||++|++++. +.|.+||+.++. ......+..|...+.+++|+|+| ++|++++ ++.|++||+
T Consensus 107 ~~~~v~~~~~Sp--Dg~~l~~~~~-~~i~~~d~~~~~--~~~~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~ 179 (741)
T 2ecf_A 107 AMTGIVDYQWSP--DAQRLLFPLG-GELYLYDLKQEG--KAAVRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDL 179 (741)
T ss_dssp CCEESCCCEECT--TSSEEEEEET-TEEEEEESSSCS--TTSCCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEET
T ss_pred cccCcceeEECC--CCCEEEEEeC-CcEEEEECCCCC--cceEEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEec
Confidence 2389999999 9999999886 999999998631 00445567788899999999999 8888887 569999999
Q ss_pred CCCeEEEeecCCCc-----------------eeEEEecCCCCCEEEEEECCC----------------------------
Q 009380 313 EKEVFDLVYSSEYA-----------------VFSLSQQPNNVNTLYFGEGQG---------------------------- 347 (536)
Q Consensus 313 ~~~~~~~~~~~~~~-----------------i~~l~~~~~~~~~l~~g~~dg---------------------------- 347 (536)
.++....+...... +.+++|+|++ +.|++++.|+
T Consensus 180 ~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 258 (741)
T 2ecf_A 180 ASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGD 258 (741)
T ss_dssp TTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTS
T ss_pred CCCCEEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCC
Confidence 99877655443222 4789999999 6777776554
Q ss_pred -----eEEEEECCC-CccceeEe--ccCCCeEEEEEecCCCCEEEEEeC-----CCcEEEEeCCCCCCCCCCcceeeccc
Q 009380 348 -----GLNIWDVRS-RKSATEWL--LHEARINTIDFNPRNPNIMATSST-----DGTACIWDLRSMATDKPEPMKVLSHK 414 (536)
Q Consensus 348 -----~i~i~d~~~-~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s~-----dg~i~iwdl~~~~~~~~~~~~~~~~~ 414 (536)
.|.+||+.+ ++...... .|...+.+++| |+| ++|++++. +..|++||+.+++ .......+.
T Consensus 259 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~----~~~~~~~~~ 332 (741)
T 2ecf_A 259 ANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQ----QRVLAHETS 332 (741)
T ss_dssp CCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCC----EEEEEEEEC
T ss_pred CCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCc----eEEEEEcCC
Confidence 889999988 77544332 47788999999 988 56665543 5679999998863 222222232
Q ss_pred C----ceeEEEEccCCCeEEEEeCCCcEEEEeCC-CCCcceEEeccCCCCceeeeeEE-EEcCCCCEEE-EEcCCC--cE
Q 009380 415 R----AVHSAYFSPSGSSLATTSFDDTIGIWSGV-NFENTSMIHHNNQTGRWISSFRA-IWGWDDSCVF-IGNMTR--TV 485 (536)
Q Consensus 415 ~----~v~~l~~sp~g~~l~t~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~-~~s~~g~~l~-~gs~dg--~I 485 (536)
. .+.+++|+|+|+++++++.||.++||.+. ++. ...+... ...+. .+ .|+|+|+.|+ +++.++ .+
T Consensus 333 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~---~~~v~--~~~~~s~dg~~l~~~~~~~~~~~~ 406 (741)
T 2ecf_A 333 PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG---NWSVD--ELLAVDEKAGLAYFRAGIESARES 406 (741)
T ss_dssp SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS---SSCEE--EEEEEETTTTEEEEEECSSCTTCB
T ss_pred CCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec---ceEEE--eEeEEeCCCCEEEEEEeCCCCceE
Confidence 2 45689999999999999999988888765 233 3333211 11122 23 5999998765 455555 89
Q ss_pred EEEcCCc-cccceeccCCceeeeeeeEeecCCCCCEEEEEccC----CeEEEEec
Q 009380 486 EVISPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG----GQVYVWTS 535 (536)
Q Consensus 486 ~v~d~~~-~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D----g~v~iW~~ 535 (536)
+||++.. +..+..+.. ... + ..++|+| ++.+|+....+ +.+++|+.
T Consensus 407 ~l~~~~~~g~~~~~l~~-~~~-~-~~~~~sp-dg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 407 QIYAVPLQGGQPQRLSK-APG-M-HSASFAR-NASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp EEEEEETTCCCCEECCC-SCS-E-EEEEECT-TSSEEEEEEEETTEEEEEEEEET
T ss_pred EEEEEEcCCCCeeeccc-CCC-c-eEEEECC-CCCEEEEEecCCCCCCeEEEEEc
Confidence 9998864 444556654 222 2 3678898 56777765433 46788764
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2e-23 Score=228.29 Aligned_cols=282 Identities=12% Similarity=0.052 Sum_probs=206.8
Q ss_pred CCceEEEEEEecCCccEEEEEeC-CC-----cEEEEECCCCCCCCCceEEeccCCC------------------------
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSK-LG-----NITFWNLDSQQDEDNGIYLFRTHLG------------------------ 283 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~-dg-----~v~iwd~~~~~~~~~~~~~~~~h~~------------------------ 283 (536)
...|.+++|+| ||++|++++. || .|++||+.+ +.....+..|..
T Consensus 36 ~~~~~~~~~Sp--dG~~la~~~~~d~~~~~~~i~~~d~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (741)
T 2ecf_A 36 GPTLMKPKVAP--DGSRVTFLRGKDSDRNQLDLWSYDIGS----GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMT 109 (741)
T ss_dssp CCCCEEEEECT--TSSEEEEEECCSSCTTEEEEEEEETTT----CCEEEEECGGGTC--------------------CCE
T ss_pred CCCCCCceEec--CCCEEEEEeccCCCCcccEEEEEECCC----CceeEccchhhcccccccccchhhhhhhhhhhcccc
Confidence 56799999999 9999999998 88 899999987 444444444332
Q ss_pred CEEEEEEecCCCCEEEEEECCCeEEEEECCCC---eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccc
Q 009380 284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE---VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA 360 (536)
Q Consensus 284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~---~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~ 360 (536)
.|.+++|+|++ ++|++++. +.|++||+.++ ....+..+...+.+++|+|++ +.|++++. +.|++||+.+++..
T Consensus 110 ~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG-~~la~~~~-~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 110 GIVDYQWSPDA-QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG-GFVSFIRG-RNLWVIDLASGRQM 185 (741)
T ss_dssp ESCCCEECTTS-SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS-SEEEEEET-TEEEEEETTTTEEE
T ss_pred CcceeEECCCC-CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC-CEEEEEeC-CcEEEEecCCCCEE
Confidence 37899999999 89998886 99999999988 777777778889999999999 78888774 59999999987765
Q ss_pred eeEeccCCC----------------eEEEEEecCCCCEEEEEeCCC---------------------------------c
Q 009380 361 TEWLLHEAR----------------INTIDFNPRNPNIMATSSTDG---------------------------------T 391 (536)
Q Consensus 361 ~~~~~h~~~----------------i~~i~~~p~~~~~l~s~s~dg---------------------------------~ 391 (536)
.....+... +.++.|+|+| ++|++++.|+ .
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 444333332 4789999998 5666766554 7
Q ss_pred EEEEeCCC-CCCCCCCcceee-cccCceeEEEEccCCCeEEEEeC-----CCcEEEEeCCCCCcceEEeccCCCCcee-e
Q 009380 392 ACIWDLRS-MATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSF-----DDTIGIWSGVNFENTSMIHHNNQTGRWI-S 463 (536)
Q Consensus 392 i~iwdl~~-~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~-----dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~ 463 (536)
|++||+.+ ++. ..+... .|...+.+++| |||++|++++. +..|.+||+.+++....+..... .++ .
T Consensus 265 l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~--~~~~~ 338 (741)
T 2ecf_A 265 LGVISPAEQAQT---QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP--TWVPL 338 (741)
T ss_dssp EEEECSSTTCCC---EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS--SCCCC
T ss_pred EEEEECCCCCce---EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC--CcCCc
Confidence 88999887 541 111111 47788999999 99999987764 56799999998877666543221 111 1
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEcCC-ccccceeccCCceeeeeeeEeecCCCCCEE-EEEccCC--eEEEEec
Q 009380 464 SFRAIWGWDDSCVFIGNMTRTVEVISPA-QRRSVATLQSPYISAIPCRFHAHPHQVGTL-AGATGGG--QVYVWTS 535 (536)
Q Consensus 464 ~~~~~~s~~g~~l~~gs~dg~I~v~d~~-~~~~~~~l~~~~~~~~~~~~~~~p~~~~~l-asgs~Dg--~v~iW~~ 535 (536)
...+.|+|||+++++++.++.++||.+. .+. ...+..+..... ..+.|+| +++.| ++++.++ .++||++
T Consensus 339 ~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~-~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 339 HNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVD-ELLAVDE-KAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp CSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEE-EEEEEET-TTTEEEEEECSSCTTCBEEEEE
T ss_pred CCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEE-eEeEEeC-CCCEEEEEEeCCCCceEEEEEE
Confidence 1236799999999999999987777664 333 566665443332 2235888 45655 4566666 8999986
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=4.3e-22 Score=195.61 Aligned_cols=275 Identities=10% Similarity=0.047 Sum_probs=195.6
Q ss_pred cccccceEEecccccCcc-ccccccCCceEEEEEEecCCccEEEEEeC-CCcEEEEECCCCCCCCCc-eEEeccCCCCEE
Q 009380 210 KIEVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRMVVAGSK-LGNITFWNLDSQQDEDNG-IYLFRTHLGPIS 286 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~-~~~~~~h~~~V~ 286 (536)
+...++.|.+||...... .....+...+ +++|+| ++++|++++. ++.|.+||+.+ ... ...+..+..++.
T Consensus 15 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~~~~ 87 (331)
T 3u4y_A 15 VEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITS--DCSNVVVTSDFCQTLVQIETQL----EPPKVVAIQEGQSSMA 87 (331)
T ss_dssp EEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECS--SSCEEEEEESTTCEEEEEECSS----SSCEEEEEEECSSCCC
T ss_pred EecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcC--CCCEEEEEeCCCCeEEEEECCC----CceeEEecccCCCCcc
Confidence 456678999999754433 2233445556 999999 9986666555 88999999987 454 666777777766
Q ss_pred EEEEecCCCCEEEEEECCC---eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCe-EEEEECCCCccce-
Q 009380 287 GIVTQQYCLSKIFTSCYDG---LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG-LNIWDVRSRKSAT- 361 (536)
Q Consensus 287 ~l~~~~~~~~~l~s~s~dg---~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~-i~i~d~~~~~~~~- 361 (536)
+++|+|++ ++|+++..++ .|.+||+.++...........+.+++|+|++..++++...++. |.+|++.....+.
T Consensus 88 ~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~ 166 (331)
T 3u4y_A 88 DVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD 166 (331)
T ss_dssp CEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred ceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence 69999999 8888555443 8999999999887777777778999999999545566666678 9999998654431
Q ss_pred ---eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCc
Q 009380 362 ---EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDT 437 (536)
Q Consensus 362 ---~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~ 437 (536)
........+.+++|+|++..+++++..++.|.+||+.+++. ............+..++|+|+|++|++++ .++.
T Consensus 167 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 244 (331)
T 3u4y_A 167 TGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN--ITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVD 244 (331)
T ss_dssp EEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS--CEEEEEEECSSCCCCEEECTTSSEEEEECSSEEE
T ss_pred cCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc--cceeeeccCCCCCceEEECCCCCEEEEEEcCCCE
Confidence 22234566899999999854666666789999999987541 01133444567788999999999776655 5778
Q ss_pred EEEEeCCCCCc--ceEEeccC-CCCcee-eeeEEEEcCCCCEEEEEcC-CCcEEEEcCCccc
Q 009380 438 IGIWSGVNFEN--TSMIHHNN-QTGRWI-SSFRAIWGWDDSCVFIGNM-TRTVEVISPAQRR 494 (536)
Q Consensus 438 I~iwd~~~~~~--~~~~~~~~-~~~~~~-~~~~~~~s~~g~~l~~gs~-dg~I~v~d~~~~~ 494 (536)
|.+||+.+++. +..+.... ...... ....++|+|+|++|++++. ++.|.+||+.+..
T Consensus 245 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 245 VFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 99999988765 33222210 001111 1122579999998866554 5799999998764
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=1.2e-22 Score=199.99 Aligned_cols=269 Identities=13% Similarity=0.134 Sum_probs=185.0
Q ss_pred cccceEEecccccCc--cc-cccccCCceEEEEEEecCCccEEEEEeCC-CcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380 212 EVGSCVDIGSLTLKP--EN-IARIMPGRITQMKFLPCSDVRMVVAGSKL-GNITFWNLDSQQDEDNGIYLFRTHLGPISG 287 (536)
Q Consensus 212 ~~dg~v~lw~~~~~~--~~-~~~~~~~~I~~v~~~p~~~~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~ 287 (536)
..++.|.+|++.... .. ....+...+.+++|+| ++++|++++.+ +.|.+|++.........+..+..+. .+.+
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~ 88 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTH 88 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSE
T ss_pred CCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECC--CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcE
Confidence 567899999984221 11 1234677899999999 99988888876 9999999983211122344454444 7889
Q ss_pred EEEecCCCCEEEEEEC-CCeEEEEECC---CCeEEEeecCCCceeEEEecCCCCCEEEEEE-CCCeEEEEECCC-Cccce
Q 009380 288 IVTQQYCLSKIFTSCY-DGLIRLMDAE---KEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRS-RKSAT 361 (536)
Q Consensus 288 l~~~~~~~~~l~s~s~-dg~I~vwd~~---~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~-~~~~~ 361 (536)
++|+|++ ++|++++. ++.|.+||+. .............+.+++|+|++ +.+++++ .++.|.+||+.+ ++...
T Consensus 89 ~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~ 166 (343)
T 1ri6_A 89 ISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVA 166 (343)
T ss_dssp EEECTTS-SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred EEEcCCC-CEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCC-CEEEEecCCCCEEEEEEecCCCceee
Confidence 9999999 77766665 8899999994 33444455556679999999998 6777776 889999999987 54432
Q ss_pred ----eEec-cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee----c--ccCceeEEEEccCCCeEE
Q 009380 362 ----EWLL-HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL----S--HKRAVHSAYFSPSGSSLA 430 (536)
Q Consensus 362 ----~~~~-h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~----~--~~~~v~~l~~sp~g~~l~ 430 (536)
.+.. ....+.+++|+|++..+++++..++.|.+||+.............. . ....+..++|+|+|++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~ 246 (343)
T 1ri6_A 167 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 246 (343)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEE
Confidence 2232 3457889999998854556666889999999964211110011111 1 123566899999998877
Q ss_pred EEe-CCCcEEEEeCCC--C--CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc-CCCcEEEEcCC
Q 009380 431 TTS-FDDTIGIWSGVN--F--ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN-MTRTVEVISPA 491 (536)
Q Consensus 431 t~s-~dg~I~iwd~~~--~--~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs-~dg~I~v~d~~ 491 (536)
++. .++.|.+||+.. + +....+... .. ...++|+|+|++|++++ .++.|.+|++.
T Consensus 247 v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~---~~---~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 247 ACDRTASLITVFSVSEDGSVLSKEGFQPTE---TQ---PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEETTTTEEEEEEECTTSCCEEEEEEEECS---SS---CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEecCCCEEEEEEEcCCCCceEEeeeecCC---Cc---cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 554 789999999973 2 222222211 11 22377999999888887 57999999553
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=1.3e-22 Score=199.89 Aligned_cols=274 Identities=9% Similarity=0.096 Sum_probs=184.5
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-CeEEEEECC--CCeEE--EeecCC
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-GLIRLMDAE--KEVFD--LVYSSE 324 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-g~I~vwd~~--~~~~~--~~~~~~ 324 (536)
++++++.++.|.+|++.... .........|...+.+++|+|++ ++|++++.+ +.|.+|++. ++... ......
T Consensus 7 l~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEG--ALTLTQVVDVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTS--CEEEEEEEECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEeCCCCCeEEEEEECCCC--cEEEeeeEecCCCCceEEECCCC-CEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 44455789999999996411 11222334577789999999999 888888876 999999998 55433 223334
Q ss_pred CceeEEEecCCCCCEEEEEE-CCCeEEEEECC---CCccceeEeccCCCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCC
Q 009380 325 YAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVR---SRKSATEWLLHEARINTIDFNPRNPNIMATSS-TDGTACIWDLRS 399 (536)
Q Consensus 325 ~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~---~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~ 399 (536)
..+.+++|+|++ +.|++++ .++.|.+||+. ..+.+..+. ....+.+++|+|++. ++++++ .++.|.+||+.+
T Consensus 84 ~~~~~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 84 GSLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNR-TLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp SCCSEEEECTTS-SEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECT
T ss_pred CCCcEEEEcCCC-CEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCC-EEEEecCCCCEEEEEEecC
Confidence 588999999998 6666655 48899999994 333444444 345688999999884 555555 899999999986
Q ss_pred -CCCCCCCcc--eee-cccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCC--CCcc--eEEeccC-CCCceeeeeEEEE
Q 009380 400 -MATDKPEPM--KVL-SHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVN--FENT--SMIHHNN-QTGRWISSFRAIW 469 (536)
Q Consensus 400 -~~~~~~~~~--~~~-~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~--~~~~--~~~~~~~-~~~~~~~~~~~~~ 469 (536)
++. .... ... .....+.+++|+|+|+++++++ .++.|.+||+.. +... ..+.... ..........++|
T Consensus 161 ~~~~--~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~ 238 (343)
T 1ri6_A 161 DGHL--VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI 238 (343)
T ss_dssp TSCE--EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred CCce--eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEE
Confidence 320 0000 122 2345788999999999776555 789999999954 3221 1121111 1011112234789
Q ss_pred cCCCCEEEE-EcCCCcEEEEcCC--c--cccceeccCCceeeeeeeEeecCCCCCEEEEEc-cCCeEEEEec
Q 009380 470 GWDDSCVFI-GNMTRTVEVISPA--Q--RRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVYVWTS 535 (536)
Q Consensus 470 s~~g~~l~~-gs~dg~I~v~d~~--~--~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs-~Dg~v~iW~~ 535 (536)
+|+|++|++ +..++.|.+|++. + .+.+..+..+.. +..++|+| ++.+|++++ .++.|.+|++
T Consensus 239 s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~s~-dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 239 TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ---PRGFNVDH-SGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS---CCCEEECT-TSSEEEEECTTTCEEEEEEE
T ss_pred CCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc---cceEEECC-CCCEEEEecCCCCeEEEEEE
Confidence 999998774 4578999999998 2 334444443322 35688998 567777776 6899999965
No 137
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=2.8e-23 Score=235.50 Aligned_cols=330 Identities=10% Similarity=0.017 Sum_probs=236.9
Q ss_pred eecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCce-------EEEEEEecCCccE
Q 009380 178 VIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRI-------TQMKFLPCSDVRM 250 (536)
Q Consensus 178 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I-------~~v~~~p~~~~~~ 250 (536)
.+.+|...+.++.|||||+.++....... ...+..|.+|++.......+..|...+ .+++|+| ||++
T Consensus 47 ~lt~~~~~v~~~~~SPDG~~la~~s~~~~----~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~l 120 (1045)
T 1k32_A 47 KIVSNLGVINNARFFPDGRKIAIRVMRGS----SLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP--DGNL 120 (1045)
T ss_dssp EEECSSSEEEEEEECTTSSEEEEEEEEST----TCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT--TCCE
T ss_pred EeeeCCCcccCeEECCCCCEEEEEEeecc----CCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCC--CCEE
Confidence 46778999999999999999996521100 012347889998665555567788888 9999999 8887
Q ss_pred EEEEeCC------CcEEEEECCCCCCC----C-----------------------------------------CceEEec
Q 009380 251 VVAGSKL------GNITFWNLDSQQDE----D-----------------------------------------NGIYLFR 279 (536)
Q Consensus 251 l~tg~~d------g~v~iwd~~~~~~~----~-----------------------------------------~~~~~~~ 279 (536)
+++++.+ ..|.+|++..+... . .....+.
T Consensus 121 l~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~ 200 (1045)
T 1k32_A 121 IISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV 200 (1045)
T ss_dssp EEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE
T ss_pred EEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECc
Confidence 7887754 35777776542100 0 0112335
Q ss_pred cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC--CCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC
Q 009380 280 THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE--KEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR 357 (536)
Q Consensus 280 ~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~--~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~ 357 (536)
+|...+.++.|+++ .++++++.|+.+.+|.+. ++....+..+. .+...+|+|++ ..|+++ .++.|.+||+...
T Consensus 201 ~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG-~~la~~-~~~~i~~~d~~~~ 275 (1045)
T 1k32_A 201 DMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDG-RRILFS-KGGSIYIFNPDTE 275 (1045)
T ss_dssp CCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESS-SCEEEE-ETTEEEEECTTTC
T ss_pred CCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCC-CEEEEE-eCCEEEEecCCce
Confidence 67888999999886 577788888999999764 34444444443 46778999998 666666 4889999999433
Q ss_pred ccceeEec-----------cCCCeEEEEEe-cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC-ceeEEEEcc
Q 009380 358 KSATEWLL-----------HEARINTIDFN-PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR-AVHSAYFSP 424 (536)
Q Consensus 358 ~~~~~~~~-----------h~~~i~~i~~~-p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~-~v~~l~~sp 424 (536)
.+..+.. |...+.+++|+ |+| ..|++++ ++.|.+|++..+ ....+..|.. .+.+++|+
T Consensus 276 -~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~s- 346 (1045)
T 1k32_A 276 -KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGT-----YVLKVPEPLRIRYVRRGGD- 346 (1045)
T ss_dssp -CEEECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSS-----BEEECSCCSCEEEEEECSS-
T ss_pred -EeeeeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCC-----ceEEccCCCcceEEeeeEc-
Confidence 3334433 34478999999 988 5666666 789999998864 2334456666 89999999
Q ss_pred CCCeEEEEeCCCcEE-EEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCc
Q 009380 425 SGSSLATTSFDDTIG-IWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY 503 (536)
Q Consensus 425 ~g~~l~t~s~dg~I~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~ 503 (536)
+|+.|++++.++.|. +||+.+++..... .... ....++|+|||++|++++.++.|++||+.+++....+..+.
T Consensus 347 dg~~l~~~s~~~~l~~~~d~~~~~~~~l~----~~~~--~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~ 420 (1045)
T 1k32_A 347 TKVAFIHGTREGDFLGIYDYRTGKAEKFE----ENLG--NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE 420 (1045)
T ss_dssp SEEEEEEEETTEEEEEEEETTTCCEEECC----CCCC--SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred CCCeEEEEECCCceEEEEECCCCCceEec----CCcc--ceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCC
Confidence 999999999888888 9998766533222 1111 23347899999999999999999999999987766654543
Q ss_pred eeeeeeeEeecCCCCCEEEEEccCC----------eEEEEecC
Q 009380 504 ISAIPCRFHAHPHQVGTLAGATGGG----------QVYVWTSD 536 (536)
Q Consensus 504 ~~~~~~~~~~~p~~~~~lasgs~Dg----------~v~iW~~d 536 (536)
... ..++|+| ++.+|++++.++ .|++||++
T Consensus 421 ~~v--~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 421 AMI--TDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp SCC--CCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred CCc--cceEECC-CCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 332 3678999 679998887654 89999974
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=4.7e-22 Score=196.88 Aligned_cols=270 Identities=10% Similarity=0.037 Sum_probs=204.0
Q ss_pred cCCceEEEEEEecCCccEEEEEeC-------CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCE-EEEEECC
Q 009380 233 MPGRITQMKFLPCSDVRMVVAGSK-------LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSK-IFTSCYD 304 (536)
Q Consensus 233 ~~~~I~~v~~~p~~~~~~l~tg~~-------dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~-l~s~s~d 304 (536)
+...+..++|+| ++++|++++. ++.|.+||..+ ...+..+... ..+..++|+|++ ++ +++...+
T Consensus 39 ~~~~~~~~~~s~--dg~~l~~~~~~~~~~~~~~~v~~~d~~~----~~~~~~~~~~-~~~~~~~~s~dg-~~l~v~~~~~ 110 (353)
T 3vgz_A 39 VGKGAYEMAYSQ--QENALWLATSQSRKLDKGGVVYRLDPVT----LEVTQAIHND-LKPFGATINNTT-QTLWFGNTVN 110 (353)
T ss_dssp EESSEEEEEEET--TTTEEEEEECCCTTTEESEEEEEECTTT----CCEEEEEEES-SCCCSEEEETTT-TEEEEEETTT
T ss_pred hccCccceEECC--CCCEEEEEcCCCcCCCCCccEEEEcCCC----CeEEEEEecC-CCcceEEECCCC-CEEEEEecCC
Confidence 345688999999 9888887774 56899999987 5556655543 447789999999 64 4555568
Q ss_pred CeEEEEECCCCeEEEeecCCC----------ceeEEEecCCCCCEEEEEE--CCCeEEEEECCCCccceeEeccCCCeEE
Q 009380 305 GLIRLMDAEKEVFDLVYSSEY----------AVFSLSQQPNNVNTLYFGE--GQGGLNIWDVRSRKSATEWLLHEARINT 372 (536)
Q Consensus 305 g~I~vwd~~~~~~~~~~~~~~----------~i~~l~~~~~~~~~l~~g~--~dg~i~i~d~~~~~~~~~~~~h~~~i~~ 372 (536)
+.|.+||+.+++......... .+.+++|+|++ +.+++++ .++.|.+||+.+++.+..+..+...+.+
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 189 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG 189 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence 999999999987755543321 27889999998 6666665 4789999999999888887766677899
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee----cccCceeEEEEccCCCeEEEEeC-CCcEEEEeCCCCC
Q 009380 373 IDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL----SHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFE 447 (536)
Q Consensus 373 i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~----~~~~~v~~l~~sp~g~~l~t~s~-dg~I~iwd~~~~~ 447 (536)
++|+|++ .++++++.++.|.+||+.+++ ...... ++...+..++|+|+|+++++++. ++.|.+||..+++
T Consensus 190 ~~~s~dg-~~l~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 190 LALDSEG-KRLYTTNADGELITIDTADNK----ILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp CEEETTT-TEEEEECTTSEEEEEETTTTE----EEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred EEECCCC-CEEEEEcCCCeEEEEECCCCe----EEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 9999988 678888889999999998853 222222 24556888999999997777665 4899999999888
Q ss_pred cceEEeccCCCCceeeeeEEEEcCCCCEEEEEc-CCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEcc
Q 009380 448 NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN-MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 526 (536)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs-~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~ 526 (536)
....+..... ..+.|+|+|+++++++ .++.|.+||..+++.+..+..+. .+..++|+| ++++|+.++.
T Consensus 265 ~~~~~~~~~~-------~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~-dg~~l~v~~~ 333 (353)
T 3vgz_A 265 ILAKVAAPES-------LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSA-DGKTLYVSVK 333 (353)
T ss_dssp EEEEEECSSC-------CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECT-TSCEEEEEEE
T ss_pred EEEEEEcCCC-------ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcC-CCCEEEEEEc
Confidence 7777654221 2377899999766555 68999999999998888776543 235678888 5676666554
Q ss_pred C
Q 009380 527 G 527 (536)
Q Consensus 527 D 527 (536)
+
T Consensus 334 ~ 334 (353)
T 3vgz_A 334 Q 334 (353)
T ss_dssp C
T ss_pred c
Confidence 4
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1.1e-22 Score=195.52 Aligned_cols=259 Identities=15% Similarity=0.103 Sum_probs=187.2
Q ss_pred cccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCC-CCCCCCceEEeccC-CCCEEE
Q 009380 210 KIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDS-QQDEDNGIYLFRTH-LGPISG 287 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~h-~~~V~~ 287 (536)
+.+.++.|.+|++..........|.+.|.+++|+| ++++|++++ ++.|.+||+.+ . ........| ...|.+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~sp--dg~~l~~~~-~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~ 89 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSP--DGKYLLLNS-EGLLYRLSLAGDP----SPEKVDTGFATICNND 89 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECT--TSSEEEEEE-TTEEEEEESSSCC----SCEECCCTTCCCBCSC
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECC--CCCEEEEEc-CCeEEEEeCCCCC----CceEeccccccccccc
Confidence 45678899999987666555677899999999999 999999987 78999999986 3 233334444 467899
Q ss_pred EEEecCCCCEEEEEEC--CC--eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC-Ccccee
Q 009380 288 IVTQQYCLSKIFTSCY--DG--LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS-RKSATE 362 (536)
Q Consensus 288 l~~~~~~~~~l~s~s~--dg--~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~~ 362 (536)
++|+|++ .+|++++. ++ .|.+|++.++....+.. ...+..++|+|++..+++++..++.+.+|++.. ......
T Consensus 90 ~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~ 167 (297)
T 2ojh_A 90 HGISPDG-ALYAISDKVEFGKSAIYLLPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR 167 (297)
T ss_dssp CEECTTS-SEEEEEECTTTSSCEEEEEETTCCCCEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred eEECCCC-CEEEEEEeCCCCcceEEEEECCCCceEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence 9999999 89999883 34 45555556665444433 345899999999944444788899999998643 233455
Q ss_pred EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-------
Q 009380 363 WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD------- 435 (536)
Q Consensus 363 ~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d------- 435 (536)
+..+...+.+++|+|++..+++++..++.+.+|++.... .....+..|...+.++.|+|+|++|++++.+
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 244 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG---SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHP 244 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS---SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC---CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence 667888999999999885344445568999999986321 2344455677889999999999999988876
Q ss_pred ----CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380 436 ----DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR 483 (536)
Q Consensus 436 ----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg 483 (536)
+.|.+||+.+++............ .+. .+.|+|++++|++++.+.
T Consensus 245 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~--~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 245 RDLDVRVQLMDMDGGNVETLFDLFGGQG-TMN--SPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SSEEEEEEEEETTSCSCEEEEEEEESTT-TSC--SCCBCTTSSEEEEEEECC
T ss_pred ccCceEEEEEecCCCCceeeeccCCCCc-ccc--cceECCCCCEEEEEEecc
Confidence 569999998876544332111111 122 267999999988877653
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=5.1e-23 Score=224.45 Aligned_cols=283 Identities=9% Similarity=0.075 Sum_probs=200.5
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC---CEEEEEEecCCCCEEEEEECC-------
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG---PISGIVTQQYCLSKIFTSCYD------- 304 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~l~s~s~d------- 304 (536)
..+.+++|+| ||+++++ +.||+|++||+.+ +.....+..|.. .|.+++|+|+| ++|++++.+
T Consensus 17 ~~~~~~~~sp--dg~~~~~-~~dg~i~~~d~~~----g~~~~~~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 17 IHDPEAKWIS--DTEFIYR-EQKGTVRLWNVET----NTSTVLIEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHS 88 (723)
T ss_dssp CCCCCCCBSS--SSCBCCC-CSSSCEEEBCGGG----CCCEEEECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSC
T ss_pred ccccccEEcC--CCcEEEE-eCCCCEEEEECCC----CcEEEEeccccccccccceEEECCCC-CEEEEEecCccceeec
Confidence 3477899999 9997776 7899999999987 555666666665 49999999999 999998764
Q ss_pred --CeEEEEECCCCeEEEeec---CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCe---------
Q 009380 305 --GLIRLMDAEKEVFDLVYS---SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARI--------- 370 (536)
Q Consensus 305 --g~I~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i--------- 370 (536)
+.|.+||+.++....+.. +...+..++|+|++ +.|++++. +.|++||+.+++.......+...+
T Consensus 89 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v 166 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL 166 (723)
T ss_dssp CCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred ceeeEEEEECCCCceEeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECccccee
Confidence 788999999987644443 33348899999999 67777776 699999999887765555444333
Q ss_pred ---------EEEEEecCCCCEEEEEeCCC----------------------------------cEEEEeCCCCCCCCCCc
Q 009380 371 ---------NTIDFNPRNPNIMATSSTDG----------------------------------TACIWDLRSMATDKPEP 407 (536)
Q Consensus 371 ---------~~i~~~p~~~~~l~s~s~dg----------------------------------~i~iwdl~~~~~~~~~~ 407 (536)
.+++|+|+| +.|++++.|+ .|++||+.+++ ..
T Consensus 167 ~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~----~~ 241 (723)
T 1xfd_A 167 YEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT----HD 241 (723)
T ss_dssp HHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC----CC
T ss_pred EEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc----ee
Confidence 789999998 5777776543 79999998754 11
Q ss_pred ceeec------ccCceeEEEEccCCCeEEEEeC----CCcEEEEeCCCCCcceEEeccCCCCceee--eeEEEEcCCCCE
Q 009380 408 MKVLS------HKRAVHSAYFSPSGSSLATTSF----DDTIGIWSGVNFENTSMIHHNNQTGRWIS--SFRAIWGWDDSC 475 (536)
Q Consensus 408 ~~~~~------~~~~v~~l~~sp~g~~l~t~s~----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~g~~ 475 (536)
..+.. +...+.+++|+|||++|++.+. +..|.+||+.+++....+..... .++. ...+.|+|||+.
T Consensus 242 ~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~--~~~~~~~~~~~~spdg~~ 319 (723)
T 1xfd_A 242 LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE--AWLHRQNEEPVFSKDGRK 319 (723)
T ss_dssp EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS--SCCCCCCCCCEECTTSCS
T ss_pred EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccC--CEEeccCCCceEcCCCCe
Confidence 22222 3678899999999998877653 35799999998876655432211 1111 113679999997
Q ss_pred EEE--EcCCC------cEEEEc-CCcccc--ceeccCCceeeeeeeEeecCCCCCEEEEEccC---CeEEEEecC
Q 009380 476 VFI--GNMTR------TVEVIS-PAQRRS--VATLQSPYISAIPCRFHAHPHQVGTLAGATGG---GQVYVWTSD 536 (536)
Q Consensus 476 l~~--gs~dg------~I~v~d-~~~~~~--~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D---g~v~iW~~d 536 (536)
|+. +..++ .|.+|| ..++.. ...+..++.... ..+.|+| ++..|+..+.+ +.++||+++
T Consensus 320 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~-~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 320 FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT-KILAYDE-KGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE-EEEEEET-TTTEEEEEESSSCTTCCEEEEEC
T ss_pred EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEE-eeeEEcC-CCCEEEEEEcCCCCcceEEEEEe
Confidence 765 44566 577788 444431 455543332222 3368898 56887655544 889999864
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=3e-22 Score=227.10 Aligned_cols=316 Identities=9% Similarity=-0.040 Sum_probs=234.3
Q ss_pred ceeeeecCCCCcccccccccccccccccccceEEecccccCccccccc-----------cCCceEEEEEE-ecCCccEEE
Q 009380 185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARI-----------MPGRITQMKFL-PCSDVRMVV 252 (536)
Q Consensus 185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~-----------~~~~I~~v~~~-p~~~~~~l~ 252 (536)
.+....|+|||+.++.. .++.|.+|++.......... |...|.+++|+ | +|++|+
T Consensus 246 ~~~~~~~SpDG~~la~~-----------~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p--dG~~la 312 (1045)
T 1k32_A 246 DYYPRHLNTDGRRILFS-----------KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPL--DGDLIA 312 (1045)
T ss_dssp SSCEEEEEESSSCEEEE-----------ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEEC--GGGCEE
T ss_pred CcceeeEcCCCCEEEEE-----------eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCC--CCCEEE
Confidence 46677899999988854 36788888873222111111 33479999999 9 999999
Q ss_pred EEeCCCcEEEEECCCCCCCCCceEEeccCCC-CEEEEEEecCCCCEEEEEECCCeEE-EEECCCCeEEEeecCCCceeEE
Q 009380 253 AGSKLGNITFWNLDSQQDEDNGIYLFRTHLG-PISGIVTQQYCLSKIFTSCYDGLIR-LMDAEKEVFDLVYSSEYAVFSL 330 (536)
Q Consensus 253 tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~~l~s~s~dg~I~-vwd~~~~~~~~~~~~~~~i~~l 330 (536)
+++ ++.|.+|++.. .....+..|.. .+.+++|+ ++ ..|++++.++.|. +||+.++....+..+...+..+
T Consensus 313 ~~~-~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~ 384 (1045)
T 1k32_A 313 FVS-RGQAFIQDVSG-----TYVLKVPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAM 384 (1045)
T ss_dssp EEE-TTEEEEECTTS-----SBEEECSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEE
T ss_pred EEE-cCEEEEEcCCC-----CceEEccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCCceEecCCccceeee
Confidence 888 78999999875 23445667777 89999999 88 8899998888899 9999988777666777889999
Q ss_pred EecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC----------CcEEEEeCCCC
Q 009380 331 SQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD----------GTACIWDLRSM 400 (536)
Q Consensus 331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d----------g~i~iwdl~~~ 400 (536)
+|+|++ ..|++++.++.|++||+.+++....+..|...+.+++|+|++ ++|++++.+ +.|++||+.++
T Consensus 385 ~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g 462 (1045)
T 1k32_A 385 GVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGR 462 (1045)
T ss_dssp EECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred EECCCC-CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCC
Confidence 999998 899999999999999999998877777899999999999988 577776654 38999999874
Q ss_pred CCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc-------ceEEec-------------------
Q 009380 401 ATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN-------TSMIHH------------------- 454 (536)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~-------~~~~~~------------------- 454 (536)
....+..|...+.+++|+|+|++|++++.++...+|+...... ...+..
T Consensus 463 -----~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (1045)
T 1k32_A 463 -----KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 537 (1045)
T ss_dssp -----EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCC
T ss_pred -----cEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCcccccc
Confidence 3445557888899999999999999999988888887543221 000000
Q ss_pred -----cC-------CCCceeeeeEEEEcCCCCEEEE-------------EcCCCcEEEEcCCccccceeccCCceeeeee
Q 009380 455 -----NN-------QTGRWISSFRAIWGWDDSCVFI-------------GNMTRTVEVISPAQRRSVATLQSPYISAIPC 509 (536)
Q Consensus 455 -----~~-------~~~~~~~~~~~~~s~~g~~l~~-------------gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~ 509 (536)
.. .....-....+.++|+|.++++ ......|.+||+.+++. ..+. .. ..
T Consensus 538 ~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~----~~-v~ 611 (1045)
T 1k32_A 538 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-TEVK----NN-LT 611 (1045)
T ss_dssp CCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE-EEEE----EE-EE
T ss_pred ccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcE-EEee----cC-cc
Confidence 00 0000011223678999987775 12245788899988754 3332 12 24
Q ss_pred eEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 510 RFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 510 ~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
.+.++| |+.+|++++.+ .|++||++
T Consensus 612 ~~~~S~-DG~~l~~~~~~-~i~~~d~~ 636 (1045)
T 1k32_A 612 DLRLSA-DRKTVMVRKDD-GKIYTFPL 636 (1045)
T ss_dssp EEEECT-TSCEEEEEETT-SCEEEEES
T ss_pred eEEECC-CCCEEEEEcCC-cEEEEeCc
Confidence 578888 67999998876 79999974
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=2.2e-22 Score=219.38 Aligned_cols=310 Identities=11% Similarity=0.002 Sum_probs=207.5
Q ss_pred ceeeeecCCCCcccccccccccccccccccceEEecccccCcc-ccccccCC---ceEEEEEEecCCccEEEEEeCC---
Q 009380 185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIARIMPG---RITQMKFLPCSDVRMVVAGSKL--- 257 (536)
Q Consensus 185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~~~~~~---~I~~v~~~p~~~~~~l~tg~~d--- 257 (536)
.+..+.|+|||++++. +.||.|.+|++..... .+...|.. .|.+++|+| ||++|++++.+
T Consensus 18 ~~~~~~~spdg~~~~~-----------~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~~~~~ 84 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-----------EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP--DREYALFSYNVEPI 84 (723)
T ss_dssp CCCCCCBSSSSCBCCC-----------CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT--TSSEEEEEESCCCC
T ss_pred cccccEEcCCCcEEEE-----------eCCCCEEEEECCCCcEEEEeccccccccccceEEECC--CCCEEEEEecCccc
Confidence 3567899999996652 3567999999865433 23334443 499999999 99999999764
Q ss_pred ------CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC-CCc----
Q 009380 258 ------GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS-EYA---- 326 (536)
Q Consensus 258 ------g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~-~~~---- 326 (536)
+.|.+||+.++. ...+.....|...+..++|+|+| +.|++++. +.|++||+.++....+... ...
T Consensus 85 ~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~ 160 (723)
T 1xfd_A 85 YQHSYTGYYVLSKIPHGD--PQSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYN 160 (723)
T ss_dssp SSSCCCSEEEEEESSSCC--CEECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred eeecceeeEEEEECCCCc--eEeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceEC
Confidence 788899998732 11122233455568899999999 88888885 7999999998876555432 222
Q ss_pred --------------eeEEEecCCCCCEEEEEECCC----------------------------------eEEEEECCCCc
Q 009380 327 --------------VFSLSQQPNNVNTLYFGEGQG----------------------------------GLNIWDVRSRK 358 (536)
Q Consensus 327 --------------i~~l~~~~~~~~~l~~g~~dg----------------------------------~i~i~d~~~~~ 358 (536)
+.+++|+|++ +.|++++.++ .|++||+.+++
T Consensus 161 g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~ 239 (723)
T 1xfd_A 161 GLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT 239 (723)
T ss_dssp EECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred cccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence 3789999999 7777776442 79999999887
Q ss_pred cceeEecc------CCCeEEEEEecCCCCEEEEEeC----CCcEEEEeCCCCCCCCCCccee--ecccCcee----EEEE
Q 009380 359 SATEWLLH------EARINTIDFNPRNPNIMATSST----DGTACIWDLRSMATDKPEPMKV--LSHKRAVH----SAYF 422 (536)
Q Consensus 359 ~~~~~~~h------~~~i~~i~~~p~~~~~l~s~s~----dg~i~iwdl~~~~~~~~~~~~~--~~~~~~v~----~l~~ 422 (536)
....+..+ ...+.+++|+|+| +++++.+. +..|++||+.+++ .... ..+...+. .++|
T Consensus 240 ~~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~~ 313 (723)
T 1xfd_A 240 HDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGV-----CTKKHEDESEAWLHRQNEEPVF 313 (723)
T ss_dssp CCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCC-----EEEEEEEECSSCCCCCCCCCEE
T ss_pred eeEEeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCCc-----ceEEEEeccCCEEeccCCCceE
Confidence 65666543 5678999999988 56665542 3579999998753 2222 23344443 7899
Q ss_pred ccCCCeEEEE--eCCC------cEEEEe-CCCCCc--ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC---CcEEEE
Q 009380 423 SPSGSSLATT--SFDD------TIGIWS-GVNFEN--TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT---RTVEVI 488 (536)
Q Consensus 423 sp~g~~l~t~--s~dg------~I~iwd-~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d---g~I~v~ 488 (536)
+|+|+.|+.. ..++ .|.+|| ..++.. ...+.. +.+...-.+.|+|+|+.|+..+.+ +.+++|
T Consensus 314 spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 389 (723)
T 1xfd_A 314 SKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS----GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY 389 (723)
T ss_dssp CTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC----SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred cCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec----CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence 9999977754 4566 577787 344331 333321 111111125799999998765544 788999
Q ss_pred cCCccc--cceeccCC--ceeeeeeeEeecCCCCCEEEEE
Q 009380 489 SPAQRR--SVATLQSP--YISAIPCRFHAHPHQVGTLAGA 524 (536)
Q Consensus 489 d~~~~~--~~~~l~~~--~~~~~~~~~~~~p~~~~~lasg 524 (536)
++.... ....+... +...+ ..++|+| ++.+|+..
T Consensus 390 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~sp-dg~~l~~~ 427 (723)
T 1xfd_A 390 SANTVGNFNRQCLSCDLVENCTY-FSASFSH-SMDFFLLK 427 (723)
T ss_dssp EECSSTTCCCBCSSTTSSSSCCC-CEEEECT-TSSEEEEE
T ss_pred EEeCCCCCCcceecccccCCCCe-EEEEECC-CCCEEEEE
Confidence 886432 33334321 12222 3578888 55766654
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=4e-22 Score=195.81 Aligned_cols=263 Identities=9% Similarity=-0.014 Sum_probs=190.8
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC-C-CEEEEEEecCCCCEE-EEEECCCeEEEEECCCCeEEEeecCCC
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL-G-PISGIVTQQYCLSKI-FTSCYDGLIRLMDAEKEVFDLVYSSEY 325 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~-~-~V~~l~~~~~~~~~l-~s~s~dg~I~vwd~~~~~~~~~~~~~~ 325 (536)
.+|++++.++.|.+||+.+ ...+..+.... . .+.+++|+|++ +++ ++++.++.|.+||+.+++.........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~----~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~ 76 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK----MAVDKVITIADAGPTPMVPMVAPGG-RIAYATVNKSESLVKIDLVTGETLGRIDLST 76 (337)
T ss_dssp EEEEEEETTTEEEEEETTT----TEEEEEEECTTCTTCCCCEEECTTS-SEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred cEEEEcCCCCeEEEEECCC----CcEEEEEEcCCCCCCccceEEcCCC-CEEEEEeCCCCeEEEEECCCCCeEeeEEcCC
Confidence 5789999999999999987 55555554322 2 47889999998 655 556668999999999887765444333
Q ss_pred ------ceeEEEecCCCCCEEEEEE------------CCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380 326 ------AVFSLSQQPNNVNTLYFGE------------GQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 326 ------~i~~l~~~~~~~~~l~~g~------------~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s 387 (536)
.+.+++|+|++ +.++++. .++.|.+||+.+++.+..+.. ...+.+++|+|++. +|+++
T Consensus 77 ~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~-~l~~~- 152 (337)
T 1pby_B 77 PEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGS-KLYGL- 152 (337)
T ss_dssp TTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSS-CEEEE-
T ss_pred cccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCC-EEEEe-
Confidence 67899999998 6777775 578999999998887777664 55678899999884 55555
Q ss_pred CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC------------------------cEEEEeC
Q 009380 388 TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD------------------------TIGIWSG 443 (536)
Q Consensus 388 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg------------------------~I~iwd~ 443 (536)
++.|.+||+.+++ .............+.|+|+|.+++..+.++ .|.+||+
T Consensus 153 -~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 226 (337)
T 1pby_B 153 -GRDLHVMDPEAGT-----LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp -SSSEEEEETTTTE-----EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred -CCeEEEEECCCCc-----EeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence 6889999998753 222222111112337899988776555332 4689999
Q ss_pred CCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEE
Q 009380 444 VNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG 523 (536)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las 523 (536)
.+++.. .+....... ....+.|+|+|++|+++ ++.|.+||+.+++.+..+..+.. +..+.|+| ++.+|++
T Consensus 227 ~~~~~~-~~~~~~~~~---~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~s~-dg~~l~~ 296 (337)
T 1pby_B 227 ETGEMA-MREVRIMDV---FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHS---YYSVNVST-DGSTVWL 296 (337)
T ss_dssp TTCCEE-EEEEEECSS---CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSC---CCEEEECT-TSCEEEE
T ss_pred CCCCce-EeecCCCCC---ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCc---eeeEEECC-CCCEEEE
Confidence 887765 332211111 22337899999999988 78999999999888777764322 24678888 5688888
Q ss_pred EccCCeEEEEecC
Q 009380 524 ATGGGQVYVWTSD 536 (536)
Q Consensus 524 gs~Dg~v~iW~~d 536 (536)
++.++.|.+||++
T Consensus 297 ~~~~~~i~v~d~~ 309 (337)
T 1pby_B 297 GGALGDLAAYDAE 309 (337)
T ss_dssp ESBSSEEEEEETT
T ss_pred EcCCCcEEEEECc
Confidence 9999999999974
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=4.4e-21 Score=189.87 Aligned_cols=277 Identities=10% Similarity=0.044 Sum_probs=202.5
Q ss_pred cceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEE-EEEeCCCcEEE
Q 009380 184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMV-VAGSKLGNITF 262 (536)
Q Consensus 184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l-~tg~~dg~v~i 262 (536)
..+..+.++++++.+........ ....++.|.+||...........+...+..++|+| +++++ +++..++.|.+
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~---~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSR---KLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINN--TTQTLWFGNTVNSAVTA 115 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCT---TTEESEEEEEECTTTCCEEEEEEESSCCCSEEEET--TTTEEEEEETTTTEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCc---CCCCCccEEEEcCCCCeEEEEEecCCCcceEEECC--CCCEEEEEecCCCEEEE
Confidence 46678899999987764411110 01136789999975443222222356688999999 88855 55566799999
Q ss_pred EECCCCCCCCCceEEeccCCCC---------EEEEEEecCCCCEEEEEE--CCCeEEEEECCCCeEEEeec-CCCceeEE
Q 009380 263 WNLDSQQDEDNGIYLFRTHLGP---------ISGIVTQQYCLSKIFTSC--YDGLIRLMDAEKEVFDLVYS-SEYAVFSL 330 (536)
Q Consensus 263 wd~~~~~~~~~~~~~~~~h~~~---------V~~l~~~~~~~~~l~s~s--~dg~I~vwd~~~~~~~~~~~-~~~~i~~l 330 (536)
||+.+ +..+..+..+... +.++.|+|++ +++++++ .++.|.+||+.+++...... +...+.++
T Consensus 116 ~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 190 (353)
T 3vgz_A 116 IDAKT----GEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGL 190 (353)
T ss_dssp EETTT----CCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCC
T ss_pred EeCCC----CeeEEEEecCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceE
Confidence 99987 5666666554322 7899999998 7777665 48899999999998877766 56668999
Q ss_pred EecCCCCCEEEEEECCCeEEEEECCCCccceeEec----cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 009380 331 SQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL----HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPE 406 (536)
Q Consensus 331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~ 406 (536)
+|+|++ +.+++++.++.|.+||+.+++.+..+.. +...+.+++|+|++..++++...++.|.+||+.+++
T Consensus 191 ~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~----- 264 (353)
T 3vgz_A 191 ALDSEG-KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN----- 264 (353)
T ss_dssp EEETTT-TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC-----
T ss_pred EECCCC-CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc-----
Confidence 999998 7889999999999999999988777664 456788999999985555555566999999998753
Q ss_pred cceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380 407 PMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR 483 (536)
Q Consensus 407 ~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg 483 (536)
......... ...++|+|+|+++++++ .++.|.+||..+++....+.... .. ..++|+|+|++|++++.++
T Consensus 265 ~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~----~~--~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 265 ILAKVAAPE-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT----HP--NSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEECSS-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS----EE--EEEEECTTSCEEEEEEECC
T ss_pred EEEEEEcCC-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC----CC--CeEEEcCCCCEEEEEEccc
Confidence 222222222 26799999999666655 68999999999888776664321 22 3477999999888776654
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=4.1e-22 Score=195.70 Aligned_cols=271 Identities=10% Similarity=0.016 Sum_probs=199.8
Q ss_pred cccccceEEecccccCccccccccCC---ceEEEEEEecCCccEE-EEEeCCCcEEEEECCCCCCCCCceEEecc-C---
Q 009380 210 KIEVGSCVDIGSLTLKPENIARIMPG---RITQMKFLPCSDVRMV-VAGSKLGNITFWNLDSQQDEDNGIYLFRT-H--- 281 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~~~~~~~~~~~~---~I~~v~~~p~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~-h--- 281 (536)
..+.++.|.+||+..........+.. .+.+++|+| +++++ +++..++.|.+||+.+ ...+..+.. +
T Consensus 6 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~v~~~~~~~v~~~d~~~----~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 6 APARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP--GGRIAYATVNKSESLVKIDLVT----GETLGRIDLSTPEE 79 (337)
T ss_dssp EEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT--TSSEEEEEETTTTEEEEEETTT----CCEEEEEECCBTTE
T ss_pred EcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC--CCCEEEEEeCCCCeEEEEECCC----CCeEeeEEcCCccc
Confidence 45678899999975433221122234 589999999 88665 5566678999999987 455544432 2
Q ss_pred -CCCEEEEEEecCCCCEEEEEE------------CCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCe
Q 009380 282 -LGPISGIVTQQYCLSKIFTSC------------YDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG 348 (536)
Q Consensus 282 -~~~V~~l~~~~~~~~~l~s~s------------~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~ 348 (536)
...+.+++|+|++ ++|++++ .++.|.+||+.+++..........+.+++|+|++ +.|+++ ++.
T Consensus 80 ~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~ 155 (337)
T 1pby_B 80 RVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDG-SKLYGL--GRD 155 (337)
T ss_dssp EEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTS-SCEEEE--SSS
T ss_pred ccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCC-CEEEEe--CCe
Confidence 2256789999998 8888886 5799999999998877666666778999999998 666666 689
Q ss_pred EEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC-----------------------cEEEEeCCCCCCCCC
Q 009380 349 LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG-----------------------TACIWDLRSMATDKP 405 (536)
Q Consensus 349 i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg-----------------------~i~iwdl~~~~~~~~ 405 (536)
|.+||+.+++.+..+..+.. ...+.|+|++..+++++..++ .|.+||+.+++.
T Consensus 156 i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--- 231 (337)
T 1pby_B 156 LHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM--- 231 (337)
T ss_dssp EEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE---
T ss_pred EEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc---
Confidence 99999999988777664331 112378898854444443333 468999988641
Q ss_pred CcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380 406 EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV 485 (536)
Q Consensus 406 ~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I 485 (536)
.......+...+.+++|+|+|++++++ ++.|.+||+.+++....+.... . ...++|+|+|++|++++.++.|
T Consensus 232 ~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~----~--~~~~~~s~dg~~l~~~~~~~~i 303 (337)
T 1pby_B 232 AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH----S--YYSVNVSTDGSTVWLGGALGDL 303 (337)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS----C--CCEEEECTTSCEEEEESBSSEE
T ss_pred eEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC----c--eeeEEECCCCCEEEEEcCCCcE
Confidence 123334566788899999999999888 7999999999887766664322 1 2237799999999999999999
Q ss_pred EEEcCCccccceeccCC
Q 009380 486 EVISPAQRRSVATLQSP 502 (536)
Q Consensus 486 ~v~d~~~~~~~~~l~~~ 502 (536)
.+||+.+++.+..+..+
T Consensus 304 ~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 304 AAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEEETTTCCEEEEEECG
T ss_pred EEEECcCCcEEEEEEcC
Confidence 99999999888877654
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=8.7e-22 Score=214.16 Aligned_cols=276 Identities=10% Similarity=0.044 Sum_probs=193.3
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK 314 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~ 314 (536)
..|.+++|+| + ..++.+. ++.|++||+.+ + ....+..+...+.+++|+|+| ++|+++ .|+.|++||+.+
T Consensus 82 ~~v~~~~~sp--d-~~~~~~~-~~~i~~~d~~~----~-~~~~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~ 150 (706)
T 2z3z_A 82 FPSFRTLDAG--R-GLVVLFT-QGGLVGFDMLA----R-KVTYLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGK 150 (706)
T ss_dssp CCCEEEEETT--T-TEEEEEE-TTEEEEEETTT----T-EEEEEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBC
T ss_pred cCceeEEECC--C-CeEEEEE-CCEEEEEECCC----C-ceEEccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCc
Confidence 5699999999 8 5555554 59999999986 3 344455677789999999999 888885 689999999998
Q ss_pred -----CeEEEeecCCCc---------------eeEEEecCCCCCEEEEEE------------------------------
Q 009380 315 -----EVFDLVYSSEYA---------------VFSLSQQPNNVNTLYFGE------------------------------ 344 (536)
Q Consensus 315 -----~~~~~~~~~~~~---------------i~~l~~~~~~~~~l~~g~------------------------------ 344 (536)
+....+...... +.+++|+|++ +.|++++
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g 229 (706)
T 2z3z_A 151 LGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG 229 (706)
T ss_dssp TTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred ccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence 766554433222 5899999999 7888776
Q ss_pred ---CCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEEeCCC-----cEEEEeCCCCCCCCCCcceee--c
Q 009380 345 ---GQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSSTDG-----TACIWDLRSMATDKPEPMKVL--S 412 (536)
Q Consensus 345 ---~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s~dg-----~i~iwdl~~~~~~~~~~~~~~--~ 412 (536)
.+..|.+||+.+++...... .|...+.+++|+|++ +.|++++.++ .|++||+.+++ ....+. .
T Consensus 230 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~----~~~~~~~~~ 304 (706)
T 2z3z_A 230 TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGR----FVRTLFVET 304 (706)
T ss_dssp SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCC----EEEEEEEEE
T ss_pred CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCc----eeeEEEEcc
Confidence 44689999999887543332 466789999999988 6777776665 89999998852 122222 2
Q ss_pred ccC---ceeEEEEcc--CCCeEEEEeCCCcEEEEeCC-CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC-CC--
Q 009380 413 HKR---AVHSAYFSP--SGSSLATTSFDDTIGIWSGV-NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM-TR-- 483 (536)
Q Consensus 413 ~~~---~v~~l~~sp--~g~~l~t~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~-dg-- 483 (536)
+.. .+.++.|+| +|+++++++.|+.++||++. ++.....+... ...+.. .+.|+|+|+.|+.++. ++
T Consensus 305 ~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~---~~~v~~-~~~~spdg~~l~~~~~~~~~~ 380 (706)
T 2z3z_A 305 DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG---EWEVTN-FAGFDPKGTRLYFESTEASPL 380 (706)
T ss_dssp CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS---SSCEEE-EEEECTTSSEEEEEESSSCTT
T ss_pred CCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC---CeEEEe-eeEEcCCCCEEEEEecCCCCc
Confidence 222 346789999 99999999999999999876 44444433211 111111 1579999988765544 33
Q ss_pred --cEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccC----CeEEEEecC
Q 009380 484 --TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG----GQVYVWTSD 536 (536)
Q Consensus 484 --~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D----g~v~iW~~d 536 (536)
.|..||..+++ +..+. +... + ..++|+| ++.+|+....+ +.|++||++
T Consensus 381 ~~~l~~~d~~~~~-~~~l~-~~~~-~-~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 381 ERHFYCIDIKGGK-TKDLT-PESG-M-HRTQLSP-DGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp CBEEEEEETTCCC-CEESC-CSSS-E-EEEEECT-TSSEEEEEEECSSCSCEEEEEESS
T ss_pred eEEEEEEEcCCCC-ceecc-CCCc-e-EEEEECC-CCCEEEEEecCCCCCcEEEEEECC
Confidence 67777777764 34443 2222 2 3578898 56777766443 569999864
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=9e-22 Score=189.03 Aligned_cols=255 Identities=9% Similarity=0.022 Sum_probs=182.0
Q ss_pred EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-CeEEEeec-C-CCceeE
Q 009380 253 AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-EVFDLVYS-S-EYAVFS 329 (536)
Q Consensus 253 tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-~~~~~~~~-~-~~~i~~ 329 (536)
.++.++.|++||+.+ . ....+..|...|.+++|+|++ .+|++++ ++.|++||+.+ +....+.. + ...+.+
T Consensus 17 ~~~~~~~i~~~d~~~----~-~~~~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 89 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRT----R-KMRVVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNND 89 (297)
T ss_dssp -CCCCEEEEEEETTT----T-EEEEEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSC
T ss_pred CCCcceeEEEEeCCC----C-ceeeeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCCceEeccccccccccc
Confidence 346789999999986 3 344566788999999999999 8888877 88999999998 77665553 3 367899
Q ss_pred EEecCCCCCEEEEEE--CCC--eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 009380 330 LSQQPNNVNTLYFGE--GQG--GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405 (536)
Q Consensus 330 l~~~~~~~~~l~~g~--~dg--~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~ 405 (536)
++|+|++ +.|++++ .++ .|..|++.++. ...+.. ...+..++|+|++..++++++.++.++||++.... .
T Consensus 90 ~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~---~ 163 (297)
T 2ojh_A 90 HGISPDG-ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS---G 163 (297)
T ss_dssp CEECTTS-SEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT---C
T ss_pred eEECCCC-CEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCC---C
Confidence 9999998 7888888 333 45555555544 344443 34589999999985555588889999999965321 2
Q ss_pred CcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCC-CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-
Q 009380 406 EPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGV-NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT- 482 (536)
Q Consensus 406 ~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d- 482 (536)
....+..+...+.++.|+|+|++|++++ .++.++||++. .......+.. .. .....+.|+|+|++|++++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~--~~~~~~~~s~dg~~l~~~~~~~ 238 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD---SA--YGDWFPHPSPSGDKVVFVSYDA 238 (297)
T ss_dssp CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC---CS--EEEEEEEECTTSSEEEEEEEET
T ss_pred cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec---CC--cccCCeEECCCCCEEEEEEcCC
Confidence 3445557788999999999999888766 58999999876 3333333321 11 233447899999999888765
Q ss_pred ----------CcEEEEcCCccccc--eeccCCceeeeeeeEeecCCCCCEEEEEccCC
Q 009380 483 ----------RTVEVISPAQRRSV--ATLQSPYISAIPCRFHAHPHQVGTLAGATGGG 528 (536)
Q Consensus 483 ----------g~I~v~d~~~~~~~--~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg 528 (536)
+.|.+||+.+++.. ..+.++.... ..+.|+| ++.+|++++.+.
T Consensus 239 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~--~~~~~sp-dg~~l~~~~~~~ 293 (297)
T 2ojh_A 239 DVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTM--NSPNWSP-DGDEFAYVRYFP 293 (297)
T ss_dssp TCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTS--CSCCBCT-TSSEEEEEEECC
T ss_pred CCCcccccCceEEEEEecCCCCceeeeccCCCCccc--ccceECC-CCCEEEEEEecc
Confidence 56999999887653 3332332222 3578898 568888777653
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=2.3e-21 Score=197.73 Aligned_cols=216 Identities=14% Similarity=0.124 Sum_probs=161.7
Q ss_pred ceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC------CCCceE-----EeccCCC
Q 009380 215 SCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD------EDNGIY-----LFRTHLG 283 (536)
Q Consensus 215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~------~~~~~~-----~~~~h~~ 283 (536)
+.+++|+... ......++.+++++ ++.+|++|+.+| |+||+...... ....+. ....|..
T Consensus 23 ~~vri~~~~~------~~~~~~~n~lavs~--~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (434)
T 2oit_A 23 KKVRIFDSPE------ELPKERSSLLAVSN--KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKF 93 (434)
T ss_dssp CEEECSCCCS------SCCCSCCBCEEEET--TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSS
T ss_pred eeEEecCCcc------ccCCCCccEEEEec--CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCC
Confidence 3677776421 12345689999999 889999999887 89987542100 001111 1124567
Q ss_pred CEEEEEEecCCCCEEE----EEECCCeEEEEECCCC--------e----EEEeecCCCceeEEEecCCCCCEEEEEECCC
Q 009380 284 PISGIVTQQYCLSKIF----TSCYDGLIRLMDAEKE--------V----FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG 347 (536)
Q Consensus 284 ~V~~l~~~~~~~~~l~----s~s~dg~I~vwd~~~~--------~----~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg 347 (536)
.|.+++|+|++ ++|+ +++.|+.|++||+.++ + .....+|...|.+++|+|++.++|++++.||
T Consensus 94 ~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg 172 (434)
T 2oit_A 94 PIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172 (434)
T ss_dssp CEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred cccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence 89999999998 8888 7888999999998754 1 2233357889999999998558999999999
Q ss_pred eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-------cccCceeEE
Q 009380 348 GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-------SHKRAVHSA 420 (536)
Q Consensus 348 ~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-------~~~~~v~~l 420 (536)
+|++||++++..+....+|...|.+++|+|++ ++|++|+.||.|++||++ ++ ....+. .|...|.++
T Consensus 173 ~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~----~~~~~~~~~~~~~~~~~~v~~v 246 (434)
T 2oit_A 173 SIAVLQVTETVKVCATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQ----EKKVIPCPPFYESDHPVRVLDV 246 (434)
T ss_dssp CEEEEEESSSEEEEEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CC----EEEEECCCTTCCTTSCEEEEEE
T ss_pred eEEEEEcCCCcceeeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Cc----ccccccCCcccCCCCceeEEEE
Confidence 99999999987766667789999999999987 789999999999999998 32 111111 234589999
Q ss_pred EEccCCCeEEEEe-CCC------cEEEEeCCCC
Q 009380 421 YFSPSGSSLATTS-FDD------TIGIWSGVNF 446 (536)
Q Consensus 421 ~~sp~g~~l~t~s-~dg------~I~iwd~~~~ 446 (536)
.|++++.++++.+ .|| .+++|++...
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 9999887775533 443 3899999865
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=8.4e-21 Score=187.86 Aligned_cols=277 Identities=10% Similarity=0.111 Sum_probs=180.7
Q ss_pred cccceEEecccccCcccc----ccccCCceEEEEEEecCCccEEEEEeC--CCcEEEEECCCCCCCCCceEEeccCCCCE
Q 009380 212 EVGSCVDIGSLTLKPENI----ARIMPGRITQMKFLPCSDVRMVVAGSK--LGNITFWNLDSQQDEDNGIYLFRTHLGPI 285 (536)
Q Consensus 212 ~~dg~v~lw~~~~~~~~~----~~~~~~~I~~v~~~p~~~~~~l~tg~~--dg~v~iwd~~~~~~~~~~~~~~~~h~~~V 285 (536)
+.++.+.+|.++...... ...+...+..++|+| +|++++++.. ++.|.+|++..+. ...+..+..+...+
T Consensus 13 ~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~sp--dg~l~~~~~~~~~~~v~~~~~~~g~--~~~~~~~~~~~~~p 88 (347)
T 3hfq_A 13 KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSA--KDCLYSVDKEDDEGGIAAWQIDGQT--AHKLNTVVAPGTPP 88 (347)
T ss_dssp SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECT--TCEEEEEEEETTEEEEEEEEEETTE--EEEEEEEEEESCCC
T ss_pred CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEcc--CCeEEEEEecCCCceEEEEEecCCc--EEEeeeeecCCCCC
Confidence 345578888775432221 123457788899999 8884444432 6899999996521 22444555677888
Q ss_pred EEEEEecCCCCEEEEEE-CCCeEEEEECC-CCeEEEe--ecC----------CCceeEEEecCCCCCEEEEEECCCeEEE
Q 009380 286 SGIVTQQYCLSKIFTSC-YDGLIRLMDAE-KEVFDLV--YSS----------EYAVFSLSQQPNNVNTLYFGEGQGGLNI 351 (536)
Q Consensus 286 ~~l~~~~~~~~~l~s~s-~dg~I~vwd~~-~~~~~~~--~~~----------~~~i~~l~~~~~~~~~l~~g~~dg~i~i 351 (536)
..++|+|++ ++|++++ .++.|.+|++. ++....+ ..+ ...+.+++|+|++ +++++...++.|.+
T Consensus 89 ~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~ 166 (347)
T 3hfq_A 89 AYVAVDEAR-QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYV 166 (347)
T ss_dssp SEEEEETTT-TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEE
T ss_pred EEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCEEEE
Confidence 999999999 8888887 68999999996 3333222 211 1247889999999 56666667889999
Q ss_pred EECC-CCccc--eeEec-cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc------CceeEEE
Q 009380 352 WDVR-SRKSA--TEWLL-HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK------RAVHSAY 421 (536)
Q Consensus 352 ~d~~-~~~~~--~~~~~-h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~------~~v~~l~ 421 (536)
||+. +++.. ..+.. ....+..++|+|++..+++++..++.|.+|++................. ..+..++
T Consensus 167 ~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 246 (347)
T 3hfq_A 167 YNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR 246 (347)
T ss_dssp EEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred EEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE
Confidence 9998 44432 22222 2346788999999854566667789999999875211000111111111 4588999
Q ss_pred EccCCCeEE-EEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-CcEEEE--cCCccccc
Q 009380 422 FSPSGSSLA-TTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-RTVEVI--SPAQRRSV 496 (536)
Q Consensus 422 ~sp~g~~l~-t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-g~I~v~--d~~~~~~~ 496 (536)
|+|+|++|+ +...++.|.+|++........+......+... ..++|+|+|++|++++.+ +.|.+| |..+++..
T Consensus 247 ~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~--~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 247 LSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFP--RDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp ECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCC--CEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCc--CeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 999999775 55568999999987322222222111112222 237799999998888765 889999 55566543
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=4.4e-21 Score=203.81 Aligned_cols=271 Identities=11% Similarity=-0.047 Sum_probs=193.7
Q ss_pred ccCCceEEEEEEecCCccEEEEEeC-CCcEEEEECCCCCCCCCceEEeccCC-CCEEEEEEecCCCCEEEEEEC---CCe
Q 009380 232 IMPGRITQMKFLPCSDVRMVVAGSK-LGNITFWNLDSQQDEDNGIYLFRTHL-GPISGIVTQQYCLSKIFTSCY---DGL 306 (536)
Q Consensus 232 ~~~~~I~~v~~~p~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~s~s~---dg~ 306 (536)
.+..+|++++|+| ||+.||+++. ||++.||++.. .....+..|. ..+..+.|+|+ .++++++. +..
T Consensus 19 ~~~~~~~~~~~~~--DG~~la~~s~~~g~~~lw~~~~-----g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~ 89 (582)
T 3o4h_A 19 LIAVEKYSLQGVV--DGDKLLVVGFSEGSVNAYLYDG-----GETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQ 89 (582)
T ss_dssp HHHSCEEEEEEEE--TTTEEEEEEEETTEEEEEEEET-----TEEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCC
T ss_pred HhccchheeecCC--CCCeEEEEEccCCceeEEEEcC-----CCcEeeecccccccccccCCCC--eEEEEeccCCCCcc
Confidence 3466799999999 9999999877 99999999853 3445555555 68999999998 67777775 454
Q ss_pred EEEEE--C--CCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCE
Q 009380 307 IRLMD--A--EKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNI 382 (536)
Q Consensus 307 I~vwd--~--~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~ 382 (536)
..+|. . ..+.. .+. ....+...+|+|++...+++...++.+.+||+.+++.......+ . .+++|+||| ++
T Consensus 90 ~~l~~~~~~~~g~~~-~l~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG-~~ 163 (582)
T 3o4h_A 90 HALFKVNTSRPGEEQ-RLE-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRG-DL 163 (582)
T ss_dssp EEEEEEETTSTTCCE-ECT-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEET-TE
T ss_pred eEEEEEeccCCCccc-ccc-CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCC-CE
Confidence 55654 4 33333 222 23345567888888666666666667779999988765444433 3 889999988 68
Q ss_pred EEEEeCC----CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC--cEEEEeCCCCCcceEEeccC
Q 009380 383 MATSSTD----GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD--TIGIWSGVNFENTSMIHHNN 456 (536)
Q Consensus 383 l~s~s~d----g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg--~I~iwd~~~~~~~~~~~~~~ 456 (536)
|++++.+ +.|++||+.+++ ...+..|...+.+++|+|||++|+++..++ .|++||+.+++.. .+....
T Consensus 164 la~~~~~~~~~~~i~~~d~~~g~-----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~ 237 (582)
T 3o4h_A 164 IAGLGFFGGGRVSLFTSNLSSGG-----LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS 237 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTTCC-----CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC
T ss_pred EEEEEEcCCCCeEEEEEcCCCCC-----ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC
Confidence 8877766 789999998753 345567888899999999999999888888 8999999887765 332111
Q ss_pred CCCceeee------eEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCe-
Q 009380 457 QTGRWISS------FRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQ- 529 (536)
Q Consensus 457 ~~~~~~~~------~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~- 529 (536)
..+.. ....|+|||.++++++.++.+++|++ ++.+.... . .+ ..++|+ ++.++++++.+..
T Consensus 238 ---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~~---~-~v-~~~~~s--dg~~l~~~s~~~~p 305 (582)
T 3o4h_A 238 ---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAPQ---G-NH-GRVVLW--RGKLVTSHTSLSTP 305 (582)
T ss_dssp ---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCCS---S-EE-EEEEEE--TTEEEEEEEETTEE
T ss_pred ---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccCC---C-ce-EEEEec--CCEEEEEEcCCCCC
Confidence 11111 11339999988999999999999999 55544222 1 22 356666 5688888887744
Q ss_pred --EEEEec
Q 009380 530 --VYVWTS 535 (536)
Q Consensus 530 --v~iW~~ 535 (536)
|++|+.
T Consensus 306 ~~l~~~d~ 313 (582)
T 3o4h_A 306 PRIVSLPS 313 (582)
T ss_dssp EEEEEETT
T ss_pred CeEEEEcC
Confidence 667664
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=3.5e-20 Score=183.36 Aligned_cols=276 Identities=9% Similarity=0.074 Sum_probs=178.4
Q ss_pred EEEEEe----CCCcEEEEECCCCCCCCCce-EEeccCCCCEEEEEEecCCCCEEEEEEC---CCeEEEEECCCCeEEEe-
Q 009380 250 MVVAGS----KLGNITFWNLDSQQDEDNGI-YLFRTHLGPISGIVTQQYCLSKIFTSCY---DGLIRLMDAEKEVFDLV- 320 (536)
Q Consensus 250 ~l~tg~----~dg~v~iwd~~~~~~~~~~~-~~~~~h~~~V~~l~~~~~~~~~l~s~s~---dg~I~vwd~~~~~~~~~- 320 (536)
.+++|+ .++.|.+|.++... +... .....+...+..++|+|++ + |++++. ++.|.+||+.++....+
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~t--g~~~~~~~~~~~~~p~~~a~spdg-~-l~~~~~~~~~~~v~~~~~~~g~~~~~~ 79 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTA--KTLTNDGLLAATQNPTYLALSAKD-C-LYSVDKEDDEGGIAAWQIDGQTAHKLN 79 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTT--TEEEEEEEEEECSCCCCEEECTTC-E-EEEEEEETTEEEEEEEEEETTEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCC--CeEEEeeeeeccCCcceEEEccCC-e-EEEEEecCCCceEEEEEecCCcEEEee
Confidence 455553 34578888886532 2221 1233455677889999998 6 555554 68999999987764333
Q ss_pred --ecCCCceeEEEecCCCCCEEEEEE-CCCeEEEEECCC-Cc--cceeEec---------cCCCeEEEEEecCCCCEEEE
Q 009380 321 --YSSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRS-RK--SATEWLL---------HEARINTIDFNPRNPNIMAT 385 (536)
Q Consensus 321 --~~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~-~~--~~~~~~~---------h~~~i~~i~~~p~~~~~l~s 385 (536)
..+...+..++|+|++ ++|++++ .++.|.+||+.. +. .+..+.. +...+.+++|+|++. ++++
T Consensus 80 ~~~~~~~~p~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~ 157 (347)
T 3hfq_A 80 TVVAPGTPPAYVAVDEAR-QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI 157 (347)
T ss_dssp EEEEESCCCSEEEEETTT-TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE
T ss_pred eeecCCCCCEEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE
Confidence 3356788999999998 7777777 789999999963 22 2223321 123488999999985 7777
Q ss_pred EeCCCcEEEEeCCC-CCCCCCCcceee-cccCceeEEEEccCCCeEEE-EeCCCcEEEEeCCC--CCcc--eEEeccCC-
Q 009380 386 SSTDGTACIWDLRS-MATDKPEPMKVL-SHKRAVHSAYFSPSGSSLAT-TSFDDTIGIWSGVN--FENT--SMIHHNNQ- 457 (536)
Q Consensus 386 ~s~dg~i~iwdl~~-~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t-~s~dg~I~iwd~~~--~~~~--~~~~~~~~- 457 (536)
...++.|.+||+.. +. ........ .....+..++|+|+|+++++ +..++.|.+|++.. ++.. ..+.....
T Consensus 158 ~~~~~~v~~~~~~~~g~--~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 235 (347)
T 3hfq_A 158 DLGSDKVYVYNVSDAGQ--LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD 235 (347)
T ss_dssp ETTTTEEEEEEECTTSC--EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT
T ss_pred eCCCCEEEEEEECCCCc--EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC
Confidence 77789999999983 21 00111111 23346788999999996666 45688999999874 3321 11111110
Q ss_pred CCceeeeeEEEEcCCCCEEEE-EcCCCcEEEEcCCcc---ccceeccCCceeeeeeeEeecCCCCCEEEEEcc-CCeEEE
Q 009380 458 TGRWISSFRAIWGWDDSCVFI-GNMTRTVEVISPAQR---RSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-GGQVYV 532 (536)
Q Consensus 458 ~~~~~~~~~~~~s~~g~~l~~-gs~dg~I~v~d~~~~---~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~-Dg~v~i 532 (536)
.........++|+|+|++|++ ...++.|.+|++... +.+..+..+.. .+..++|+| ++.+|++++. ++.|.+
T Consensus 236 ~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~--~~~~~~~sp-dg~~l~v~~~~~~~v~v 312 (347)
T 3hfq_A 236 YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD--FPRDFDLDP-TEAFVVVVNQNTDNATL 312 (347)
T ss_dssp CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS--CCCEEEECT-TSSEEEEEETTTTEEEE
T ss_pred CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC--CcCeEEECC-CCCEEEEEEcCCCcEEE
Confidence 000012334789999998754 556899999998732 33444443221 234688999 5687777765 599999
Q ss_pred EecC
Q 009380 533 WTSD 536 (536)
Q Consensus 533 W~~d 536 (536)
|+++
T Consensus 313 ~~~d 316 (347)
T 3hfq_A 313 YARD 316 (347)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9653
No 152
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=6.6e-21 Score=207.23 Aligned_cols=278 Identities=9% Similarity=0.028 Sum_probs=189.5
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCce-EEeccCC-----------------CCEEEEEEecCCCCE
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGI-YLFRTHL-----------------GPISGIVTQQYCLSK 297 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~-~~~~~h~-----------------~~V~~l~~~~~~~~~ 297 (536)
.+..+.|. +..+++++.+| | +||+.++ ..+ ..+..|. ..|.+++|+|++ .+
T Consensus 27 ~~~~~~w~----g~~~~~~~~~~-i-~~d~~tg----~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~-~~ 95 (706)
T 2z3z_A 27 YVVGLQWM----GDNYVFIEGDD-L-VFNKANG----KSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRG-LV 95 (706)
T ss_dssp -CTTCEEE----TTEEEEEETTE-E-EEEC-----------CEEEEHHHHHTTC-----------CCCEEEEETTTT-EE
T ss_pred cCCCCcCc----CCeEEEEeCCc-E-EEECCCC----cEeeEEeechhHhhhhccchhccccccccCceeEEECCCC-eE
Confidence 35557776 34566677777 8 9999874 331 2222221 569999999993 44
Q ss_pred EEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC-----CccceeEeccCCC---
Q 009380 298 IFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS-----RKSATEWLLHEAR--- 369 (536)
Q Consensus 298 l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~-----~~~~~~~~~h~~~--- 369 (536)
+++ .++.|++||+.++....+..+...+.+++|+|++ +.|+++ .++.|++||+.+ ++.......+...
T Consensus 96 ~~~--~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 96 VLF--TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp EEE--ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred EEE--ECCEEEEEECCCCceEEccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 444 3699999999999888777777889999999999 677774 678999999998 7765444433332
Q ss_pred -----------eEEEEEecCCCCEEEEEe---------------------------------CCCcEEEEeCCCCCCCCC
Q 009380 370 -----------INTIDFNPRNPNIMATSS---------------------------------TDGTACIWDLRSMATDKP 405 (536)
Q Consensus 370 -----------i~~i~~~p~~~~~l~s~s---------------------------------~dg~i~iwdl~~~~~~~~ 405 (536)
+.++.|+|+| ++|++++ .+..|++||+.+++.
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~--- 247 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT--- 247 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE---
T ss_pred ccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce---
Confidence 4889999988 6777776 446799999987531
Q ss_pred Cccee-ecccCceeEEEEccCCCeEEEEeCCC-----cEEEEeCCCCCcceEEeccCCCCcee-eeeEEEEcC--CCCEE
Q 009380 406 EPMKV-LSHKRAVHSAYFSPSGSSLATTSFDD-----TIGIWSGVNFENTSMIHHNNQTGRWI-SSFRAIWGW--DDSCV 476 (536)
Q Consensus 406 ~~~~~-~~~~~~v~~l~~sp~g~~l~t~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~--~g~~l 476 (536)
..... ..|...+.+++|+|+|++|++++.++ .|.+||+.+++....+..... ..++ ....+.|+| +|++|
T Consensus 248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~-~~~~~~~~~~~~sp~~dg~~l 326 (706)
T 2z3z_A 248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD-KHYVEPLHPLTFLPGSNNQFI 326 (706)
T ss_dssp EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC-SSCCCCCSCCEECTTCSSEEE
T ss_pred EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC-CCeECccCCceeecCCCCEEE
Confidence 11111 24667899999999999999988775 899999998844333321111 1111 112367999 99999
Q ss_pred EEEcCCCcEEEEcCC-ccccceeccCCceeeeeeeEeecCCCCCEEEE-EccCC----eEEEEec
Q 009380 477 FIGNMTRTVEVISPA-QRRSVATLQSPYISAIPCRFHAHPHQVGTLAG-ATGGG----QVYVWTS 535 (536)
Q Consensus 477 ~~gs~dg~I~v~d~~-~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las-gs~Dg----~v~iW~~ 535 (536)
++++.++.++||.+. ++..+..+..+..... ..+.|+| ++..|+. ++.++ .|+.|++
T Consensus 327 ~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~-~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~ 389 (706)
T 2z3z_A 327 WQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT-NFAGFDP-KGTRLYFESTEASPLERHFYCIDI 389 (706)
T ss_dssp EEECTTSSCEEEEEETTSCEEEECCCSSSCEE-EEEEECT-TSSEEEEEESSSCTTCBEEEEEET
T ss_pred EEEccCCccEEEEEECCCCEEEecCCCCeEEE-eeeEEcC-CCCEEEEEecCCCCceEEEEEEEc
Confidence 999999999999876 5556666655433222 3368898 4566654 45554 5666654
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=1.2e-19 Score=180.57 Aligned_cols=277 Identities=9% Similarity=0.094 Sum_probs=181.1
Q ss_pred ccEEEEEe----CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC----CeEEEEECCC--CeE
Q 009380 248 VRMVVAGS----KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD----GLIRLMDAEK--EVF 317 (536)
Q Consensus 248 ~~~l~tg~----~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d----g~I~vwd~~~--~~~ 317 (536)
..++++|+ .++.|.+|.++........+..+ +...+..++|+|++ ++|++++.+ +.|.+|++.. +..
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 34556664 35689999886432112223333 67778889999999 899999886 8999998865 544
Q ss_pred EEee---cCCCceeEEEecCCCCCEEEEEE-CCCeEEEEECCCCccceeE---ec-----------cCCCeEEEEEecCC
Q 009380 318 DLVY---SSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSRKSATEW---LL-----------HEARINTIDFNPRN 379 (536)
Q Consensus 318 ~~~~---~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~---~~-----------h~~~i~~i~~~p~~ 379 (536)
..+. .+......+++ ++ ++|++++ .++.|.+|++.....+..+ .. +...+.+++|+|++
T Consensus 90 ~~~~~~~~~~~~p~~~~~--dg-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg 166 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT--NG-KNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG 166 (361)
T ss_dssp EEEEEEECSSSCEEEEEE--CS-SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred EEeeEeccCCCCcEEEEE--CC-CEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence 3332 24456777887 55 5666665 6789999999754332211 11 12345889999998
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCC--C-C------cceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcc
Q 009380 380 PNIMATSSTDGTACIWDLRSMATDK--P-E------PMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENT 449 (536)
Q Consensus 380 ~~~l~s~s~dg~i~iwdl~~~~~~~--~-~------~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~ 449 (536)
..+++++..++.|.+|++....... . . ......+...+.+++|+|+|+++++++ .++.|.+||+.++...
T Consensus 167 ~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~ 246 (361)
T 3scy_A 167 KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLD 246 (361)
T ss_dssp SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEE
T ss_pred CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceE
Confidence 5455555568899999987643100 0 0 111234556788999999999887777 6899999999865432
Q ss_pred eE--EeccCCCCceeeeeEEEEcCCCCEEEEEcCC--CcEEEEcCC--ccc--cceeccCCceeeeeeeEeecCCCCCEE
Q 009380 450 SM--IHHNNQTGRWISSFRAIWGWDDSCVFIGNMT--RTVEVISPA--QRR--SVATLQSPYISAIPCRFHAHPHQVGTL 521 (536)
Q Consensus 450 ~~--~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d--g~I~v~d~~--~~~--~~~~l~~~~~~~~~~~~~~~p~~~~~l 521 (536)
.. +........ ....++|+|+|++|++++.+ +.|.+|++. +++ .+..+.. ...+..++|+| ++.+|
T Consensus 247 ~~~~~~~~~~~~~--~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~sp-dg~~l 320 (361)
T 3scy_A 247 EIQTVAADTVNAQ--GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT---GIHPRNFIITP-NGKYL 320 (361)
T ss_dssp EEEEEESCSSCCC--CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC---SSCCCEEEECT-TSCEE
T ss_pred EeEEEecCCCCCC--CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC---CCCCceEEECC-CCCEE
Confidence 22 221111111 12347899999998776654 889999985 343 3333332 12234688999 66877
Q ss_pred EEEc-cCCeEEEEecC
Q 009380 522 AGAT-GGGQVYVWTSD 536 (536)
Q Consensus 522 asgs-~Dg~v~iW~~d 536 (536)
++++ .++.|.+|++|
T Consensus 321 ~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 321 LVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEETTTTEEEEEEEC
T ss_pred EEEECCCCCEEEEEEE
Confidence 7776 77999998654
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=2.2e-20 Score=198.47 Aligned_cols=274 Identities=8% Similarity=-0.015 Sum_probs=198.1
Q ss_pred ccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccC-CceEEEEEEecCCccEEEEEeC---CC
Q 009380 183 FNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMP-GRITQMKFLPCSDVRMVVAGSK---LG 258 (536)
Q Consensus 183 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~-~~I~~v~~~p~~~~~~l~tg~~---dg 258 (536)
...|.++.|+|||+.++.. ...+|.+.||++.......+..|. ..+.+++|+| | +++++++. +.
T Consensus 21 ~~~~~~~~~~~DG~~la~~---------s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~sp--d-~~l~~~~~~~g~~ 88 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVV---------GFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGV--G-RVILVRDVSKGAE 88 (582)
T ss_dssp HSCEEEEEEEETTTEEEEE---------EEETTEEEEEEEETTEEEECCSSCCSEECEECTTC--S-EEEEEEECSTTSC
T ss_pred ccchheeecCCCCCeEEEE---------EccCCceeEEEEcCCCcEeeecccccccccccCCC--C-eEEEEeccCCCCc
Confidence 3568999999999999965 234789999998544433334444 6899999999 8 77877765 45
Q ss_pred cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCC
Q 009380 259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVN 338 (536)
Q Consensus 259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~ 338 (536)
...||.+..... +... .+..+ ..+...+|+|++...+++.+.++.+.+||+.++....+..+.. .+++|+|+| +
T Consensus 89 ~~~l~~~~~~~~-g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG-~ 162 (582)
T 3o4h_A 89 QHALFKVNTSRP-GEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRG-D 162 (582)
T ss_dssp CEEEEEEETTST-TCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEET-T
T ss_pred ceEEEEEeccCC-Cccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCC-C
Confidence 566766543100 2222 33222 2344678999885555555555566699999998777665544 899999999 7
Q ss_pred EEEEEECC----CeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC--cEEEEeCCCCCCCCCCcceeec
Q 009380 339 TLYFGEGQ----GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG--TACIWDLRSMATDKPEPMKVLS 412 (536)
Q Consensus 339 ~l~~g~~d----g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg--~i~iwdl~~~~~~~~~~~~~~~ 412 (536)
.|++++.+ +.|++||+.+++.. .+..|...+..++|+||| ++|++++.++ .|++||+.+++ .. .+..
T Consensus 163 ~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~----~~-~~~~ 235 (582)
T 3o4h_A 163 LIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGS----VE-DLEL 235 (582)
T ss_dssp EEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCC----EE-ECCC
T ss_pred EEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCc----EE-EccC
Confidence 88877766 78999999888754 667788899999999998 6777888888 89999998753 22 4446
Q ss_pred ccCceeEEE--------EccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC-
Q 009380 413 HKRAVHSAY--------FSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR- 483 (536)
Q Consensus 413 ~~~~v~~l~--------~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg- 483 (536)
|...+..+. |+|+|.++++++.|++++||++ ++... ... ..+. .+.|+ +++++++++.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~-----~~~-~~v~--~~~~s-dg~~l~~~s~~~~ 304 (582)
T 3o4h_A 236 PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE-----APQ-GNHG--RVVLW-RGKLVTSHTSLST 304 (582)
T ss_dssp SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC-----CCS-SEEE--EEEEE-TTEEEEEEEETTE
T ss_pred CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-----cCC-CceE--EEEec-CCEEEEEEcCCCC
Confidence 777777777 9999988899999999999999 43322 111 2233 36788 898888887764
Q ss_pred --cEEEEcCCc
Q 009380 484 --TVEVISPAQ 492 (536)
Q Consensus 484 --~I~v~d~~~ 492 (536)
.|.+|+..+
T Consensus 305 p~~l~~~d~~~ 315 (582)
T 3o4h_A 305 PPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEETTCC
T ss_pred CCeEEEEcCCC
Confidence 477777654
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=1.4e-19 Score=184.55 Aligned_cols=245 Identities=12% Similarity=0.037 Sum_probs=165.3
Q ss_pred ccceeeeecCCCCcccccccccccccccccccceEEeccccc---------C-------ccccccccCCceEEEEEEecC
Q 009380 183 FNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL---------K-------PENIARIMPGRITQMKFLPCS 246 (536)
Q Consensus 183 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~---------~-------~~~~~~~~~~~I~~v~~~p~~ 246 (536)
...+..+.+++++.+++.. +.++ +.+|+... . .......+.+.|++++|+|
T Consensus 36 ~~~~n~lavs~~~~~l~~~----------~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-- 102 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAG----------GASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-- 102 (434)
T ss_dssp CSCCBCEEEETTTTEEEEE----------ETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT--
T ss_pred CCCccEEEEecCCCEEEEE----------CCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC--
Confidence 3457788888888877744 3333 55544210 0 0001122467899999999
Q ss_pred CccEEE----EEeCCCcEEEEECCCCC-----C--CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380 247 DVRMVV----AGSKLGNITFWNLDSQQ-----D--EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE 315 (536)
Q Consensus 247 ~~~~l~----tg~~dg~v~iwd~~~~~-----~--~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~ 315 (536)
++++|+ +|+.|+.|+|||+.+.. . ....+..+.+|...|.+++|+|+++.+|++++.||+|++||++++
T Consensus 103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~ 182 (434)
T 2oit_A 103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET 182 (434)
T ss_dssp TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence 999999 78889999999986520 0 011245667799999999999985489999999999999999987
Q ss_pred eEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC-------CCeEEEEEecCCCCEE-EEE
Q 009380 316 VFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE-------ARINTIDFNPRNPNIM-ATS 386 (536)
Q Consensus 316 ~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-------~~i~~i~~~p~~~~~l-~s~ 386 (536)
... ....|...|.+++|+|++ ++|++|+.||.|++||++ ++....+..|. ..|.+++|++++ .++ +.+
T Consensus 183 ~~~~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~ 259 (434)
T 2oit_A 183 VKVCATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY-VFAIVYA 259 (434)
T ss_dssp EEEEEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT-EEEEEEE
T ss_pred cceeeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc-eEEEEEc
Confidence 544 344578899999999998 899999999999999998 55555554332 379999999966 344 334
Q ss_pred eCCCc------EEEEeCCCCCCCCCCcc-eee-------cccCceeEEEEccCCCeEEEEeC-CCcEEEEeC
Q 009380 387 STDGT------ACIWDLRSMATDKPEPM-KVL-------SHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSG 443 (536)
Q Consensus 387 s~dg~------i~iwdl~~~~~~~~~~~-~~~-------~~~~~v~~l~~sp~g~~l~t~s~-dg~I~iwd~ 443 (536)
+.||. +++||+++.+....... ... ..+.+...+.+-++.+++++++. .+.|.|+..
T Consensus 260 ~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 260 AADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp ETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred cCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 44533 89999987532111111 111 12222233444467676666654 444666653
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=3.4e-19 Score=177.32 Aligned_cols=273 Identities=11% Similarity=0.068 Sum_probs=177.5
Q ss_pred ccccceEEecccccCcc---ccccccCCceEEEEEEecCCccEEEEEeCC----CcEEEEECCCCCCCCCceEEeccCCC
Q 009380 211 IEVGSCVDIGSLTLKPE---NIARIMPGRITQMKFLPCSDVRMVVAGSKL----GNITFWNLDSQQDEDNGIYLFRTHLG 283 (536)
Q Consensus 211 ~~~dg~v~lw~~~~~~~---~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d----g~v~iwd~~~~~~~~~~~~~~~~h~~ 283 (536)
.+.++.|.+|.++.... .+...+...+..++|+| ++++|++++.+ +.|.+|++.........+.....+..
T Consensus 23 ~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~sp--dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~ 100 (361)
T 3scy_A 23 SGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSA--DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA 100 (361)
T ss_dssp SSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECT--TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred CCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECC--CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC
Confidence 34567889998754321 11122667788899999 99999998875 79999998753111233444445666
Q ss_pred CEEEEEEecCCCCEEEEEE-CCCeEEEEECCCC-eEE---EeecC-----------CCceeEEEecCCCCCEEEEEE-CC
Q 009380 284 PISGIVTQQYCLSKIFTSC-YDGLIRLMDAEKE-VFD---LVYSS-----------EYAVFSLSQQPNNVNTLYFGE-GQ 346 (536)
Q Consensus 284 ~V~~l~~~~~~~~~l~s~s-~dg~I~vwd~~~~-~~~---~~~~~-----------~~~i~~l~~~~~~~~~l~~g~-~d 346 (536)
....+++ ++ ++|++++ .++.|.+|++... ... ....+ ...+.+++|+|++ +++++++ .+
T Consensus 101 ~p~~~~~--dg-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~ 176 (361)
T 3scy_A 101 DPCYLTT--NG-KNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG-KYLLADDLGT 176 (361)
T ss_dssp CEEEEEE--CS-SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS-SEEEEEETTT
T ss_pred CcEEEEE--CC-CEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC-CEEEEEeCCC
Confidence 7778888 66 7777766 5889999999743 211 11111 2235789999998 6555554 57
Q ss_pred CeEEEEECCCCcc------c------ee-EeccCCCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCCCCcceee-
Q 009380 347 GGLNIWDVRSRKS------A------TE-WLLHEARINTIDFNPRNPNIMATSS-TDGTACIWDLRSMATDKPEPMKVL- 411 (536)
Q Consensus 347 g~i~i~d~~~~~~------~------~~-~~~h~~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~~~~~~~~~~~~~- 411 (536)
+.|.+|++..... + .. ...+...+..++|+|++ +++++++ .++.|.+||+.++.. .......
T Consensus 177 ~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~--~~~~~~~~ 253 (361)
T 3scy_A 177 DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGML--DEIQTVAA 253 (361)
T ss_dssp TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEE--EEEEEEES
T ss_pred CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCce--EEeEEEec
Confidence 8999999875432 1 11 12345668899999998 4555555 689999999985421 0111111
Q ss_pred --cccCceeEEEEccCCCeEEEEeCC--CcEEEEeCC--CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc-CCCc
Q 009380 412 --SHKRAVHSAYFSPSGSSLATTSFD--DTIGIWSGV--NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN-MTRT 484 (536)
Q Consensus 412 --~~~~~v~~l~~sp~g~~l~t~s~d--g~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs-~dg~ 484 (536)
.+......++|+|+|++|+++..+ +.|.+|++. +++......... +.... .++|+|+|++|++++ .++.
T Consensus 254 ~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~--~~~~spdg~~l~~~~~~~~~ 329 (361)
T 3scy_A 254 DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPR--NFIITPNGKYLLVACRDTNV 329 (361)
T ss_dssp CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCC--EEEECTTSCEEEEEETTTTE
T ss_pred CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCc--eEEECCCCCEEEEEECCCCC
Confidence 233456899999999988777654 889999986 333211111111 22222 377999999988887 5688
Q ss_pred EEEE--cCCccccc
Q 009380 485 VEVI--SPAQRRSV 496 (536)
Q Consensus 485 I~v~--d~~~~~~~ 496 (536)
|.+| |..+++..
T Consensus 330 v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 330 IQIFERDQATGLLT 343 (361)
T ss_dssp EEEEEECTTTCCEE
T ss_pred EEEEEEECCCCcEe
Confidence 9996 55566543
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=1.5e-19 Score=178.45 Aligned_cols=282 Identities=11% Similarity=0.093 Sum_probs=186.6
Q ss_pred eecCCCCcccccccccccccccccccceEEecccccCccccccccCC--ceEEEEEEecCCccEE-EEEeCCCcEEEEEC
Q 009380 189 CKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPG--RITQMKFLPCSDVRMV-VAGSKLGNITFWNL 265 (536)
Q Consensus 189 ~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~--~I~~v~~~p~~~~~~l-~tg~~dg~v~iwd~ 265 (536)
+.+++++.+++ ....++.|.+||.............. .+..++|+| +++++ +++..++.|.+||+
T Consensus 5 ~~~~~~~~~~v----------~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~~~v~~~~~~~i~~~d~ 72 (349)
T 1jmx_B 5 PALKAGHEYMI----------VTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP--DNRTAYVLNNHYGDIYGIDL 72 (349)
T ss_dssp CCCCTTCEEEE----------EEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT--TSSEEEEEETTTTEEEEEET
T ss_pred ccccCCCEEEE----------EeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC--CCCEEEEEeCCCCcEEEEeC
Confidence 34555666655 34667899999975432211111223 688999999 88755 45567899999999
Q ss_pred CCCCCCCCceEEeccCC------CCEEEEEEecCCCCEEEEEECC------------CeEEEEECCCCe---EEEeecCC
Q 009380 266 DSQQDEDNGIYLFRTHL------GPISGIVTQQYCLSKIFTSCYD------------GLIRLMDAEKEV---FDLVYSSE 324 (536)
Q Consensus 266 ~~~~~~~~~~~~~~~h~------~~V~~l~~~~~~~~~l~s~s~d------------g~I~vwd~~~~~---~~~~~~~~ 324 (536)
.+ ...+..+..+. ..+.+++|+|++ ++|++++.+ +.|.+||+.++. ......+.
T Consensus 73 ~t----~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 147 (349)
T 1jmx_B 73 DT----CKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP 147 (349)
T ss_dssp TT----TEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC
T ss_pred CC----CcEEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC
Confidence 87 45555554322 237889999999 888888865 999999998743 23344455
Q ss_pred CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCC------------------------CeEEEEEecCCC
Q 009380 325 YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA------------------------RINTIDFNPRNP 380 (536)
Q Consensus 325 ~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~------------------------~i~~i~~~p~~~ 380 (536)
..+.+++|+|++ + +++++ +.|.+||+.+++.+..+..+.. ...++++++++.
T Consensus 148 ~~~~~~~~s~dg-~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 223 (349)
T 1jmx_B 148 RQVYLMRAADDG-S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 223 (349)
T ss_dssp SSCCCEEECTTS-C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred CcccceeECCCC-c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence 678999999998 5 55543 3599999999887766653320 234466665431
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCC
Q 009380 381 NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTG 459 (536)
Q Consensus 381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 459 (536)
...........+..+|+.+++ ........+...+.+++|+| +|++++++ ++.|.+||+.+++....+.....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~-- 296 (349)
T 1jmx_B 224 QDPATADLLYGYLSVDLKTGK---THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHT-- 296 (349)
T ss_dssp ---CCCEEEEEEEEEETTTCC---EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSC--
T ss_pred CCccccccceeEEEEeccCCc---EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCC--
Confidence 110000001112224444432 11122223556788999999 99999888 88999999998877666643221
Q ss_pred ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC
Q 009380 460 RWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP 502 (536)
Q Consensus 460 ~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~ 502 (536)
. ..++|+++|++|++++.++.|.+||..+++.+..+..+
T Consensus 297 --~--~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 297 --Y--YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp --C--CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred --c--cceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 1 23779999999998888999999999999888777643
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=1.4e-19 Score=178.64 Aligned_cols=236 Identities=11% Similarity=0.052 Sum_probs=172.5
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCC--ceeEEEecCCCCCEE-EEEECCCeEEEEECCCCccceeE
Q 009380 287 GIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEY--AVFSLSQQPNNVNTL-YFGEGQGGLNIWDVRSRKSATEW 363 (536)
Q Consensus 287 ~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~--~i~~l~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~ 363 (536)
.+++++++ .++++++.++.|.+||+.+++......... .+..++|+|++ +.+ +++..++.|.+||+.+++.+..+
T Consensus 4 g~~~~~~~-~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGH-EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDN-RTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTC-EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTS-SEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCC-EEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCC-CEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 34567776 889999999999999999988776665444 68899999998 555 45557899999999998887776
Q ss_pred eccC------CCeEEEEEecCCCCEEEEEeCC------------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC
Q 009380 364 LLHE------ARINTIDFNPRNPNIMATSSTD------------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS 425 (536)
Q Consensus 364 ~~h~------~~i~~i~~~p~~~~~l~s~s~d------------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~ 425 (536)
..+. ..+.+++|+|++ ++|++++.+ +.|.+||+.+++. ........+...+.+++|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~d 158 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE--AKPVRTFPMPRQVYLMRAADD 158 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG--BCCSEEEECCSSCCCEEECTT
T ss_pred EcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccc--cceeeeccCCCcccceeECCC
Confidence 6332 237889999988 567777654 8999999987431 122333445557899999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC-------------------Ccee------------------------
Q 009380 426 GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT-------------------GRWI------------------------ 462 (536)
Q Consensus 426 g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~-------------------~~~~------------------------ 462 (536)
|+ +++++. .|.+||+.+++....+...... ....
T Consensus 159 g~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 235 (349)
T 1jmx_B 159 GS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 235 (349)
T ss_dssp SC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred Cc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence 99 665543 4999999888766555322100 0000
Q ss_pred --------------------eeeEEEEcC-CCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEE
Q 009380 463 --------------------SSFRAIWGW-DDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTL 521 (536)
Q Consensus 463 --------------------~~~~~~~s~-~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~l 521 (536)
....++|+| ++++++++ ++.|.+||+.+++.+..+..++. ...++|+| ++.+|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~s~-dg~~l 309 (349)
T 1jmx_B 236 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHT---YYCVAFDK-KGDKL 309 (349)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSC---CCEEEECS-SSSCE
T ss_pred EEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCC---ccceEECC-CCCEE
Confidence 122356789 99999888 88999999999988777764332 23578888 56788
Q ss_pred EEEccCCeEEEEecC
Q 009380 522 AGATGGGQVYVWTSD 536 (536)
Q Consensus 522 asgs~Dg~v~iW~~d 536 (536)
++++.++.|.+||++
T Consensus 310 ~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 310 YLGGTFNDLAVFNPD 324 (349)
T ss_dssp EEESBSSEEEEEETT
T ss_pred EEecCCCeEEEEecc
Confidence 888899999999974
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=1.4e-19 Score=180.47 Aligned_cols=276 Identities=12% Similarity=0.027 Sum_probs=179.0
Q ss_pred EEEEEeCC--CcEEEEECCCCCCCCCc--eEEec-cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC-CCeEEEeecC
Q 009380 250 MVVAGSKL--GNITFWNLDSQQDEDNG--IYLFR-THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE-KEVFDLVYSS 323 (536)
Q Consensus 250 ~l~tg~~d--g~v~iwd~~~~~~~~~~--~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~-~~~~~~~~~~ 323 (536)
.|++|+.. +.|.+|+++... +.. +.... .+...+..++|+|++ ++|++++.+ .|.+|++. ++.......+
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~--g~l~~~~~~~~~~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~~~~ 79 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEK--LTCKLIKRTEIPQDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHEASH 79 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTT--TEEEEEEEEECCTTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCC--CCEEEeeEEccCCCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEeeEe
Confidence 45666653 568888775321 221 21211 234568899999999 899999988 99999997 7765543322
Q ss_pred --CCceeEEEecCCCCCE--EEEEE-------------CCCeEEEEECC-CCccceeEe----ccCCCeEEEEEecCCCC
Q 009380 324 --EYAVFSLSQQPNNVNT--LYFGE-------------GQGGLNIWDVR-SRKSATEWL----LHEARINTIDFNPRNPN 381 (536)
Q Consensus 324 --~~~i~~l~~~~~~~~~--l~~g~-------------~dg~i~i~d~~-~~~~~~~~~----~h~~~i~~i~~~p~~~~ 381 (536)
.+.+.+++|+|++ +. ++++. .+|.+.+|++. .++....+. .+...+.+++|+|+| +
T Consensus 80 ~~~g~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~ 157 (365)
T 1jof_A 80 PIGGHPRANDADTNT-RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-T 157 (365)
T ss_dssp ECCSSGGGGCTTSCC-EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-S
T ss_pred ecCCCCccEEECCCC-CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC-C
Confidence 2346679999998 53 44442 68999999997 465544443 245789999999998 5
Q ss_pred EEEEEe-CCCcEEEEeCC-CCCCCCCCcceee---cccCceeEEEEccCCCeEEEEeC-CCcEEEEeCC--CCCcce---
Q 009380 382 IMATSS-TDGTACIWDLR-SMATDKPEPMKVL---SHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGV--NFENTS--- 450 (536)
Q Consensus 382 ~l~s~s-~dg~i~iwdl~-~~~~~~~~~~~~~---~~~~~v~~l~~sp~g~~l~t~s~-dg~I~iwd~~--~~~~~~--- 450 (536)
++++++ .++.|++||+. +++ ....... .|...+.+++|+|+|++|++++. ++.|.+|++. +++...
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~g~---~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~ 234 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLASGE---VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH 234 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSC---EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCCC---EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccc
Confidence 566554 46799999998 542 1111111 24567899999999999888775 6889999765 444321
Q ss_pred EEeccCC--CCce------eeeeEEE-EcCCCCEEEEEcCCC------cEEEEcCC-ccccce---eccCCceeeeeeeE
Q 009380 451 MIHHNNQ--TGRW------ISSFRAI-WGWDDSCVFIGNMTR------TVEVISPA-QRRSVA---TLQSPYISAIPCRF 511 (536)
Q Consensus 451 ~~~~~~~--~~~~------~~~~~~~-~s~~g~~l~~gs~dg------~I~v~d~~-~~~~~~---~l~~~~~~~~~~~~ 511 (536)
.+..... .+.. .....++ |+|||++|++++.+. .|.+|++. +++... .+..+... ...+
T Consensus 235 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~--~~~~ 312 (365)
T 1jof_A 235 SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG--GHSN 312 (365)
T ss_dssp EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC--TTCC
T ss_pred eEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC--cccc
Confidence 1211110 1110 0233478 999999988776432 79999986 554332 12212111 2346
Q ss_pred eecCC--CCCEEEEEcc-CCeEEEEecC
Q 009380 512 HAHPH--QVGTLAGATG-GGQVYVWTSD 536 (536)
Q Consensus 512 ~~~p~--~~~~lasgs~-Dg~v~iW~~d 536 (536)
+++|. ++.+|++++. ++.|.||+++
T Consensus 313 a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 313 AVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp CEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred eecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 77785 5789998886 4899999864
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=1.3e-19 Score=197.52 Aligned_cols=312 Identities=10% Similarity=-0.025 Sum_probs=199.6
Q ss_pred eeecCCCCcccccccccccccccccccceEEecccccCccccc-cccCC---ceEEEEEEecCCccEEEEEeC-------
Q 009380 188 TCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIA-RIMPG---RITQMKFLPCSDVRMVVAGSK------- 256 (536)
Q Consensus 188 ~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~-~~~~~---~I~~v~~~p~~~~~~l~tg~~------- 256 (536)
.+.|+|||.+++. +.++.|.+|++........ ..|.. .|.+++||| ||++|++++.
T Consensus 20 ~~~~s~dg~~~~~-----------~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~ 86 (719)
T 1z68_A 20 FPNWISGQEYLHQ-----------SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP--DRQFVYLESDYSKLWRY 86 (719)
T ss_dssp CCEESSSSEEEEE-----------CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT--TSSEEEEEEEEEECSSS
T ss_pred ccEECCCCeEEEE-----------cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECC--CCCeEEEEecCceeEEe
Confidence 6788899965542 2478999999865443322 23322 499999999 9999998876
Q ss_pred --CCcEEEEECCCCCCCCCce--EEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec--CCCce---
Q 009380 257 --LGNITFWNLDSQQDEDNGI--YLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS--SEYAV--- 327 (536)
Q Consensus 257 --dg~v~iwd~~~~~~~~~~~--~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~--~~~~i--- 327 (536)
++.|++||+.++ ..+ ..+ ...+..++|+|+| +.|+++. ++.|++||+.++....+.. +...|
T Consensus 87 s~~~~i~~~d~~~g----~~~~~~~l---~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g 157 (719)
T 1z68_A 87 SYTATYYIYDLSNG----EFVRGNEL---PRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNG 157 (719)
T ss_dssp CEEEEEEEEETTTT----EECCSSCC---CSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEES
T ss_pred ecceEEEEEECCCC----ccccceec---CcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcc
Confidence 789999999863 221 112 2568899999999 8888876 8899999998876654432 22212
Q ss_pred --------------eEEEecCCCCCEEEEEECCC----------------------------------eEEEEECCCCcc
Q 009380 328 --------------FSLSQQPNNVNTLYFGEGQG----------------------------------GLNIWDVRSRKS 359 (536)
Q Consensus 328 --------------~~l~~~~~~~~~l~~g~~dg----------------------------------~i~i~d~~~~~~ 359 (536)
.+++|+|++ +.|++++.|. .|++||+.+++.
T Consensus 158 ~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~ 236 (719)
T 1z68_A 158 IPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAY 236 (719)
T ss_dssp SCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHH
T ss_pred cccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCc
Confidence 489999999 7888776542 789999998765
Q ss_pred c--------eeEeccCCCeEEEEEecCCCCEEEEEeCC----CcEEEEe----CCCCCCCCCCcce--eecccCcee---
Q 009380 360 A--------TEWLLHEARINTIDFNPRNPNIMATSSTD----GTACIWD----LRSMATDKPEPMK--VLSHKRAVH--- 418 (536)
Q Consensus 360 ~--------~~~~~h~~~i~~i~~~p~~~~~l~s~s~d----g~i~iwd----l~~~~~~~~~~~~--~~~~~~~v~--- 418 (536)
. ..+..|...+.+++|+|++ .++++.... ..|.+|| +.+++.. .... ...|...+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~ 313 (719)
T 1z68_A 237 VGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCP--KTQEHIEESRTGWAGGFF 313 (719)
T ss_dssp HCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECC--GGGEEEEECSSSCSSSSS
T ss_pred cceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceE--EEEecccccCCceEcccc
Confidence 3 2233577889999999986 677664432 2488899 7665311 1111 135666676
Q ss_pred --EEEEccCCCeEEE--EeCCC--cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-----CcEEE
Q 009380 419 --SAYFSPSGSSLAT--TSFDD--TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-----RTVEV 487 (536)
Q Consensus 419 --~l~~sp~g~~l~t--~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v 487 (536)
.+.|+|+|+.|+. +..+| .|.+||+.+++ ...+.... . .+. .+.++ +++.|+..+.+ +.+++
T Consensus 314 ~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~--~-~v~--~~~~~-d~~~i~~~~~~~~~~~~~~~l 386 (719)
T 1z68_A 314 VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGK--W-EAI--NIFRV-TQDSLFYSSNEFEEYPGRRNI 386 (719)
T ss_dssp CCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSS--S-CEE--EEEEE-CSSEEEEEESCGGGCTTCBEE
T ss_pred CCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCc--e-EEE--EEEEE-eCCEEEEEEecCCCCCceEEE
Confidence 8999999996654 44555 57778876655 23332111 1 122 23344 67666655544 77888
Q ss_pred EcCCc--cc-cceeccC----CceeeeeeeEeecCCCCCEEE-EEccC--CeEEEEec
Q 009380 488 ISPAQ--RR-SVATLQS----PYISAIPCRFHAHPHQVGTLA-GATGG--GQVYVWTS 535 (536)
Q Consensus 488 ~d~~~--~~-~~~~l~~----~~~~~~~~~~~~~p~~~~~la-sgs~D--g~v~iW~~ 535 (536)
|.+.. +. ....+.. +.... ..+.|+| ++.+|+ +++.+ ..+.+|++
T Consensus 387 ~~~~~~~g~~~~~~l~~~~~~~~~~~--~~~~~s~-dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 387 YRISIGSYPPSKKCVTCHLRKERCQY--YTASFSD-YAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp EEEECSSSSCCEEESSTTTTTTTBCB--EEEEECG-GGSSEEEEECCBSSCEEEEECS
T ss_pred EEEeCCCCCCCceeccCccCCCCCce--EEEEECC-CCCEEEEEcCCCCCCeEEEEEC
Confidence 87653 32 1223321 21222 3467777 445555 44443 46777775
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=1.3e-19 Score=197.43 Aligned_cols=281 Identities=11% Similarity=0.078 Sum_probs=183.8
Q ss_pred EEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC---CEEEEEEecCCCCEEEEEEC---------CCe
Q 009380 239 QMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG---PISGIVTQQYCLSKIFTSCY---------DGL 306 (536)
Q Consensus 239 ~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~l~s~s~---------dg~ 306 (536)
+++|+| ++.++++ +.|++|++||+.+ +.....+..|.. .|.+++|+||| ++|++++. ++.
T Consensus 20 ~~~~s~--dg~~~~~-~~d~~i~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~ 91 (719)
T 1z68_A 20 FPNWIS--GQEYLHQ-SADNNIVLYNIET----GQSYTILSNRTMKSVNASNYGLSPDR-QFVYLESDYSKLWRYSYTAT 91 (719)
T ss_dssp CCEESS--SSEEEEE-CTTSCEEEEESSS----CCEEEEECHHHHHTTTCSEEEECTTS-SEEEEEEEEEECSSSCEEEE
T ss_pred ccEECC--CCeEEEE-cCCCCEEEEEcCC----CcEEEEEccccccccceeeEEECCCC-CeEEEEecCceeEEeecceE
Confidence 789999 8865555 4699999999987 555555555543 48999999999 89988876 789
Q ss_pred EEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE-eccCCCe---------------
Q 009380 307 IRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW-LLHEARI--------------- 370 (536)
Q Consensus 307 I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~h~~~i--------------- 370 (536)
|++||+.++...........+.+++|+|+| +.|+++. ++.|++||+.+++..... .++...|
T Consensus 92 i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~ 169 (719)
T 1z68_A 92 YYIYDLSNGEFVRGNELPRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLA 169 (719)
T ss_dssp EEEEETTTTEECCSSCCCSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTC
T ss_pred EEEEECCCCccccceecCcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeeccc
Confidence 999999998772111223568999999999 6777765 679999999887764322 2332222
Q ss_pred --EEEEEecCCCCEEEEEeCCC----------------------------------cEEEEeCCCCCCC----CCCccee
Q 009380 371 --NTIDFNPRNPNIMATSSTDG----------------------------------TACIWDLRSMATD----KPEPMKV 410 (536)
Q Consensus 371 --~~i~~~p~~~~~l~s~s~dg----------------------------------~i~iwdl~~~~~~----~~~~~~~ 410 (536)
.+++|+||| +.|++++.|. .|++||+.+++.. ...+..+
T Consensus 170 ~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 248 (719)
T 1z68_A 170 TKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMI 248 (719)
T ss_dssp SSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHH
T ss_pred CcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccC
Confidence 489999998 6787776542 7889999875310 0000112
Q ss_pred ecccCceeEEEEccCCCeEEEEeCCC----cEEEEe----CCCCCcceEEe-ccCCCCceee---eeEEEEcCCCCEEEE
Q 009380 411 LSHKRAVHSAYFSPSGSSLATTSFDD----TIGIWS----GVNFENTSMIH-HNNQTGRWIS---SFRAIWGWDDSCVFI 478 (536)
Q Consensus 411 ~~~~~~v~~l~~sp~g~~l~t~s~dg----~I~iwd----~~~~~~~~~~~-~~~~~~~~~~---~~~~~~s~~g~~l~~ 478 (536)
..|...+.+++|+||++++++....+ .|.+|| +.+++....+. .......++. ...+.|+|||+.|+.
T Consensus 249 ~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 328 (719)
T 1z68_A 249 ASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYK 328 (719)
T ss_dssp HTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred CCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEE
Confidence 35788899999999987776644322 488899 77665544431 0001111222 013679999996554
Q ss_pred --EcCCC--cEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEcc-----CCeEEEEec
Q 009380 479 --GNMTR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-----GGQVYVWTS 535 (536)
Q Consensus 479 --gs~dg--~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~-----Dg~v~iW~~ 535 (536)
+..++ .|.+|++.+++ ...+..+..... .+.+. ++..|+..+. ++.++||.+
T Consensus 329 ~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~--~~~~~--d~~~i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 329 IFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAI--NIFRV--TQDSLFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp EEECTTSCEEEEEESSCSTT-CEECSCSSSCEE--EEEEE--CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred EEEccCCceEEEEEECCCCc-eEecccCceEEE--EEEEE--eCCEEEEEEecCCCCCceEEEEEE
Confidence 44444 57778887765 444544332222 22223 3455555544 488899875
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=6e-18 Score=169.78 Aligned_cols=278 Identities=14% Similarity=0.052 Sum_probs=183.6
Q ss_pred EEEEecCCccEEEEEeC-CC--cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe
Q 009380 240 MKFLPCSDVRMVVAGSK-LG--NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV 316 (536)
Q Consensus 240 v~~~p~~~~~~l~tg~~-dg--~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~ 316 (536)
.+|+| ||++|+.++. +| .|.+||+.+ +.......+|...+..+.|+|++ +.|+.++.++.|++||+.++.
T Consensus 41 ~~~Sp--Dg~~l~~~~~~~g~~~l~~~d~~~----g~~~~lt~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~g~ 113 (388)
T 3pe7_A 41 KCFTR--DGSKLLFGGAFDGPWNYYLLDLNT----QVATQLTEGRGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLATLE 113 (388)
T ss_dssp CCBCT--TSCEEEEEECTTSSCEEEEEETTT----CEEEECCCSSCBCSSSCEECTTS-SEEEEEETTTEEEEEETTTCC
T ss_pred ccCCC--CCCEEEEEEcCCCCceEEEEeCCC----CceEEeeeCCCCCccceEEcCCC-CEEEEEeCCCeEEEEECCCCc
Confidence 78999 9999998887 66 488888876 44555555666566577899999 999999999999999999987
Q ss_pred EEEeecCC-CceeEEE--ecCCCCCEEEEE----------------------ECCCeEEEEECCCCccceeEeccCCCeE
Q 009380 317 FDLVYSSE-YAVFSLS--QQPNNVNTLYFG----------------------EGQGGLNIWDVRSRKSATEWLLHEARIN 371 (536)
Q Consensus 317 ~~~~~~~~-~~i~~l~--~~~~~~~~l~~g----------------------~~dg~i~i~d~~~~~~~~~~~~h~~~i~ 371 (536)
...+.... ..+.... +++++ ..++.. ..++.|.+||+.+++. ..+..+...+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~ 191 (388)
T 3pe7_A 114 ENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-TVILQENQWLG 191 (388)
T ss_dssp EEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-EEEEEESSCEE
T ss_pred ceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce-EEeecCCcccc
Confidence 76655433 3343333 47887 566532 2346899999998864 44445777899
Q ss_pred EEEEec-CCCCEEEEEeCC------CcEEEEeCCCCCCCCCCcceeeccc--CceeEEEEccCCCeEEEEeC-CC----c
Q 009380 372 TIDFNP-RNPNIMATSSTD------GTACIWDLRSMATDKPEPMKVLSHK--RAVHSAYFSPSGSSLATTSF-DD----T 437 (536)
Q Consensus 372 ~i~~~p-~~~~~l~s~s~d------g~i~iwdl~~~~~~~~~~~~~~~~~--~~v~~l~~sp~g~~l~t~s~-dg----~ 437 (536)
.+.|+| ++ ..|+.++.+ ..|.++|+.... ...+..+. ..+..+.|+|+|+.|+..+. ++ .
T Consensus 192 ~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (388)
T 3pe7_A 192 HPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTN-----MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRF 265 (388)
T ss_dssp EEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCC-----CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEE
T ss_pred ccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCc-----eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcce
Confidence 999999 88 566655543 378888876532 22333333 35788999999998766543 22 3
Q ss_pred EEEEeCCCCCcceEEeccCCCCceee-eeEEEEcCCCCEEEEE---------cCCCcEEEEcCCccccceeccCCceee-
Q 009380 438 IGIWSGVNFENTSMIHHNNQTGRWIS-SFRAIWGWDDSCVFIG---------NMTRTVEVISPAQRRSVATLQSPYISA- 506 (536)
Q Consensus 438 I~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~g~~l~~g---------s~dg~I~v~d~~~~~~~~~l~~~~~~~- 506 (536)
|.+||+.+++......... ...... .-...|+|||+.|+.. ..+..|++||+.+++. ..+..+....
T Consensus 266 l~~~d~~~g~~~~l~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~ 343 (388)
T 3pe7_A 266 IYSADPETLENRQLTSMPA-CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWK 343 (388)
T ss_dssp EEEECTTTCCEEEEEEECC-EEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCC
T ss_pred EEEEecCCCceEEEEcCCC-ceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCccc
Confidence 9999998876543322211 000000 0013589999987754 4456899999998754 3444332200
Q ss_pred --------eeeeEeecCCCCCEEEEEc-cCCeEEEEec
Q 009380 507 --------IPCRFHAHPHQVGTLAGAT-GGGQVYVWTS 535 (536)
Q Consensus 507 --------~~~~~~~~p~~~~~lasgs-~Dg~v~iW~~ 535 (536)
....++|+| ++..|+.++ .+|...||.+
T Consensus 344 ~~~~~~~~~~~~~~~sp-Dg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 344 VFEGDRQVTHPHPSFTP-DDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp CBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEE
T ss_pred ccccccccCCCCccCCC-CCCEEEEEecCCCceeEEEE
Confidence 124568888 567666554 6787778765
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=1.8e-17 Score=181.05 Aligned_cols=247 Identities=10% Similarity=0.069 Sum_probs=171.9
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCC-----EEEEEEecCCCCEEEEEECC-----
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGP-----ISGIVTQQYCLSKIFTSCYD----- 304 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~-----V~~l~~~~~~~~~l~s~s~d----- 304 (536)
....++.|+| ++.+|+++ ||+|++||+.+ +.....+.+|... ...+.|+||+ ++|+.++.+
T Consensus 17 ~~~~~~~w~~--dg~~~~~~--~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 17 LKLYSLRWIS--DHEYLYKQ--ENNILVFNAEY----GNSSVFLENSTFDEFGHSINDYSISPDG-QFILLEYNYVKQWR 87 (740)
T ss_dssp CCCCCEEECS--SSEEEEEE--TTEEEEEETTT----CCEEEEECTTTTTTCCSCCCEEEECTTS-SEEEEEEEEEECSS
T ss_pred ccccccEECC--CCcEEEEc--CCcEEEEECCC----CceEEEEechhhhhhcccccceEECCCC-CEEEEEECCeeeEE
Confidence 3467899999 99988886 89999999998 5556667776543 2447899999 888888876
Q ss_pred ----CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee-EeccCCCe---------
Q 009380 305 ----GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE-WLLHEARI--------- 370 (536)
Q Consensus 305 ----g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~h~~~i--------- 370 (536)
+.+.+||+.+++...+..+...+...+|+|+| +.|+.+. ++.|++||+.+++..+. ..++...+
T Consensus 88 ~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG-~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVG-HKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp SCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred EccceEEEEEECCCCcEEEcccCCCcceeeEECCCC-CEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence 56779999999988777778889999999999 6666664 67999999988765332 12332222
Q ss_pred --------EEEEEecCCCCEEEEEeCCC------------------------------------cEEEEeCCC---CCCC
Q 009380 371 --------NTIDFNPRNPNIMATSSTDG------------------------------------TACIWDLRS---MATD 403 (536)
Q Consensus 371 --------~~i~~~p~~~~~l~s~s~dg------------------------------------~i~iwdl~~---~~~~ 403 (536)
..+.|+||| +.||.++.|. .|++||+.+ ++..
T Consensus 166 ~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~ 244 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA 244 (740)
T ss_dssp HHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC
T ss_pred cchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc
Confidence 358999998 5677664321 477888877 5210
Q ss_pred CCCcceee------cccCceeEEEEccCCCeEEEEeC----CCcEEEEeCCCCC----c--ceEEeccCCCCceee---e
Q 009380 404 KPEPMKVL------SHKRAVHSAYFSPSGSSLATTSF----DDTIGIWSGVNFE----N--TSMIHHNNQTGRWIS---S 464 (536)
Q Consensus 404 ~~~~~~~~------~~~~~v~~l~~sp~g~~l~t~s~----dg~I~iwd~~~~~----~--~~~~~~~~~~~~~~~---~ 464 (536)
....+. +|...+..++|+|||+.++.... +..|.+||+.+++ + ...+... ....++. .
T Consensus 245 --~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~-~~~~~v~~~~~ 321 (740)
T 4a5s_A 245 --TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM-STTGWVGRFRP 321 (740)
T ss_dssp --CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE-CSSSCSSSSSC
T ss_pred --eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec-cCCceEccCcC
Confidence 122222 37778999999999996665543 3369999998876 1 2222111 1122222 1
Q ss_pred eEEEEcCCCCEEE-EEcC-C--CcEEEEcCCccccc
Q 009380 465 FRAIWGWDDSCVF-IGNM-T--RTVEVISPAQRRSV 496 (536)
Q Consensus 465 ~~~~~s~~g~~l~-~gs~-d--g~I~v~d~~~~~~~ 496 (536)
..+.|+|||+.|+ ..+. + ..|.+|+..+++..
T Consensus 322 ~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 322 SEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp CCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred CCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence 2367999999876 5543 3 46888998877544
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=2.4e-17 Score=179.97 Aligned_cols=243 Identities=9% Similarity=-0.020 Sum_probs=166.0
Q ss_pred cceeeeecCCCCcccccccccccccccccccceEEecccccCcc-ccccccCC-----ceEEEEEEecCCccEEEEEeCC
Q 009380 184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIARIMPG-----RITQMKFLPCSDVRMVVAGSKL 257 (536)
Q Consensus 184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~~~~~~-----~I~~v~~~p~~~~~~l~tg~~d 257 (536)
.....+.|+|||.+++. . +|.|.+|++..... .+...|.. ....+.||| ||++|+.++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~----------~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~ 82 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYK----------Q--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP--DGQFILLEYNY 82 (740)
T ss_dssp CCCCCEEECSSSEEEEE----------E--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT--TSSEEEEEEEE
T ss_pred ccccccEECCCCcEEEE----------c--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC--CCCEEEEEECC
Confidence 34568899999987762 1 67899999865443 33344432 234588999 99999998876
Q ss_pred ---------CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec--CCCc
Q 009380 258 ---------GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS--SEYA 326 (536)
Q Consensus 258 ---------g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~--~~~~ 326 (536)
+.+.+||+.++ ....+..|...+...+|+||| +.|+.++ |+.|++||+.++....+.. +...
T Consensus 83 ~~~~r~~~~~~~~~~d~~~~-----~~~~l~~~~~~~~~~~~SPdG-~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~ 155 (740)
T 4a5s_A 83 VKQWRHSYTASYDIYDLNKR-----QLITEERIPNNTQWVTWSPVG-HKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI 155 (740)
T ss_dssp EECSSSCEEEEEEEEETTTT-----EECCSSCCCTTEEEEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT
T ss_pred eeeEEEccceEEEEEECCCC-----cEEEcccCCCcceeeEECCCC-CEEEEEE-CCeEEEEECCCCceEEEcCCCCccc
Confidence 56779999863 234466778889999999999 8888774 7899999998876554432 1121
Q ss_pred e-----------------eEEEecCCCCCEEEEEECC-C-----------------------------------eEEEEE
Q 009380 327 V-----------------FSLSQQPNNVNTLYFGEGQ-G-----------------------------------GLNIWD 353 (536)
Q Consensus 327 i-----------------~~l~~~~~~~~~l~~g~~d-g-----------------------------------~i~i~d 353 (536)
+ ..+.|+|+| +.|+.+..| + .|.+||
T Consensus 156 ~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d 234 (740)
T 4a5s_A 156 IYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVN 234 (740)
T ss_dssp EEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred eecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEE
Confidence 2 358999999 677766422 1 588899
Q ss_pred CCC---Ccc--ceeEe------ccCCCeEEEEEecCCCCEEEEEeC----CCcEEEEeCCCCC----CCCCCcceeeccc
Q 009380 354 VRS---RKS--ATEWL------LHEARINTIDFNPRNPNIMATSST----DGTACIWDLRSMA----TDKPEPMKVLSHK 414 (536)
Q Consensus 354 ~~~---~~~--~~~~~------~h~~~i~~i~~~p~~~~~l~s~s~----dg~i~iwdl~~~~----~~~~~~~~~~~~~ 414 (536)
+.+ ++. ...+. +|...+..++|+|++ ++++.... +..|.+||+.+++ +.....+....|.
T Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~ 313 (740)
T 4a5s_A 235 TDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTT 313 (740)
T ss_dssp TTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSS
T ss_pred CCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCC
Confidence 988 742 23333 277789999999998 45554432 3469999998864 1111111123466
Q ss_pred Ccee-----EEEEccCCCeEE-EEe-CCC--cEEEEeCCCCCcc
Q 009380 415 RAVH-----SAYFSPSGSSLA-TTS-FDD--TIGIWSGVNFENT 449 (536)
Q Consensus 415 ~~v~-----~l~~sp~g~~l~-t~s-~dg--~I~iwd~~~~~~~ 449 (536)
..|. .+.|+|||+.|+ ..+ .+| .|.+||+.++...
T Consensus 314 ~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 314 GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence 5554 789999999877 555 333 5888898765443
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=2.9e-17 Score=164.72 Aligned_cols=282 Identities=9% Similarity=-0.006 Sum_probs=181.3
Q ss_pred eecCCCCcccccccccccccccccccc--eEEecccccCc-cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEEC
Q 009380 189 CKDEGLGVGSCDLIKGVVKTEKIEVGS--CVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNL 265 (536)
Q Consensus 189 ~~~s~~~~~l~~~~~~~~~~~~~~~dg--~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~ 265 (536)
+.|+|||+.++... ..+| .|.+|++.... ..+...+...+..+.|+| |++.|+.++.++.|++||+
T Consensus 41 ~~~SpDg~~l~~~~---------~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp--dg~~l~~~~~~~~l~~~d~ 109 (388)
T 3pe7_A 41 KCFTRDGSKLLFGG---------AFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP--DDDALFYVKDGRNLMRVDL 109 (388)
T ss_dssp CCBCTTSCEEEEEE---------CTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT--TSSEEEEEETTTEEEEEET
T ss_pred ccCCCCCCEEEEEE---------cCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC--CCCEEEEEeCCCeEEEEEC
Confidence 88999999998662 2234 46666764432 223344455556788999 9999999999999999999
Q ss_pred CCCCCCCCceEEeccCCCCEEEEE--EecCCCCEEEEE----------------------ECCCeEEEEECCCCeEEEee
Q 009380 266 DSQQDEDNGIYLFRTHLGPISGIV--TQQYCLSKIFTS----------------------CYDGLIRLMDAEKEVFDLVY 321 (536)
Q Consensus 266 ~~~~~~~~~~~~~~~h~~~V~~l~--~~~~~~~~l~s~----------------------s~dg~I~vwd~~~~~~~~~~ 321 (536)
.+ +.....+..+...+.... +++++ .+++.. ..+..|.+||+.++....+.
T Consensus 110 ~~----g~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 184 (388)
T 3pe7_A 110 AT----LEENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL 184 (388)
T ss_dssp TT----CCEEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE
T ss_pred CC----CcceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee
Confidence 97 455555555655554444 47887 777643 24578999999999888887
Q ss_pred cCCCceeEEEecC-CCCCEEEEEECC------CeEEEEECCCCccceeEeccC--CCeEEEEEecCCCCEEEEEeCCC--
Q 009380 322 SSEYAVFSLSQQP-NNVNTLYFGEGQ------GGLNIWDVRSRKSATEWLLHE--ARINTIDFNPRNPNIMATSSTDG-- 390 (536)
Q Consensus 322 ~~~~~i~~l~~~~-~~~~~l~~g~~d------g~i~i~d~~~~~~~~~~~~h~--~~i~~i~~~p~~~~~l~s~s~dg-- 390 (536)
.+...+..++|+| ++ ..|+....+ ..|.++|+..+.. ..+..+. ..+..+.|+|+|..+++++..++
T Consensus 185 ~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 262 (388)
T 3pe7_A 185 QENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSP 262 (388)
T ss_dssp EESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCC
T ss_pred cCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCC
Confidence 7888899999999 87 666666543 3788888765543 3343343 35788999999865544444332
Q ss_pred --cEEEEeCCCCCCCCCCcceeecccC---ceeEEEEccCCCeEEEE---------eCCCcEEEEeCCCCCcceEEeccC
Q 009380 391 --TACIWDLRSMATDKPEPMKVLSHKR---AVHSAYFSPSGSSLATT---------SFDDTIGIWSGVNFENTSMIHHNN 456 (536)
Q Consensus 391 --~i~iwdl~~~~~~~~~~~~~~~~~~---~v~~l~~sp~g~~l~t~---------s~dg~I~iwd~~~~~~~~~~~~~~ 456 (536)
.|++||+.+++. ..+.....+.. ....+.|+|+|+.|+.. ..+..|++||+.+++......+..
T Consensus 263 ~~~l~~~d~~~g~~--~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 340 (388)
T 3pe7_A 263 DRFIYSADPETLEN--RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDT 340 (388)
T ss_dssp CEEEEEECTTTCCE--EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCC
T ss_pred cceEEEEecCCCce--EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccC
Confidence 399999988641 01111111100 12224799999988754 445689999998876543333322
Q ss_pred CCC-----ceeeeeEEEEcCCCCEEEEEc-CCCcEEEEcC
Q 009380 457 QTG-----RWISSFRAIWGWDDSCVFIGN-MTRTVEVISP 490 (536)
Q Consensus 457 ~~~-----~~~~~~~~~~s~~g~~l~~gs-~dg~I~v~d~ 490 (536)
... .......++|+|||+.|+..+ .++...||.+
T Consensus 341 ~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 341 SWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp CCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 000 000123367999999877655 4566556544
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=1.6e-17 Score=165.57 Aligned_cols=243 Identities=9% Similarity=0.029 Sum_probs=163.6
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECC-CCCCCCCceEEec--cCCCCEEEEEEecCCCCE--EEEEE-------
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLD-SQQDEDNGIYLFR--THLGPISGIVTQQYCLSK--IFTSC------- 302 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~-~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~--l~s~s------- 302 (536)
..+..++|+| ++++|++++.+ .|.+|++. + +....... .+ +.+.+++|+|++ ++ +++++
T Consensus 40 ~~~~~~a~sp--dg~~l~~~~~~-~v~~~~~~~~----g~~~~~~~~~~~-g~~~~~~~spdg-~~l~~~~~~~~~~~~~ 110 (365)
T 1jof_A 40 EPISWMTFDH--ERKNIYGAAMK-KWSSFAVKSP----TEIVHEASHPIG-GHPRANDADTNT-RAIFLLAAKQPPYAVY 110 (365)
T ss_dssp CCCSEEEECT--TSSEEEEEEBT-EEEEEEEEET----TEEEEEEEEECC-SSGGGGCTTSCC-EEEEEEECSSTTCCEE
T ss_pred CCCcEEEECC--CCCEEEEEccc-eEEEEEECCC----CCEEEeeEeecC-CCCccEEECCCC-CEEEEEEecCCcceec
Confidence 4688999999 99999998887 99999986 4 33332221 11 235668999998 63 45553
Q ss_pred ------CCCeEEEEECC-CCeEEEee-----cCCCceeEEEecCCCCCEEEEEEC-CCeEEEEECC-CCccc--eeEe--
Q 009380 303 ------YDGLIRLMDAE-KEVFDLVY-----SSEYAVFSLSQQPNNVNTLYFGEG-QGGLNIWDVR-SRKSA--TEWL-- 364 (536)
Q Consensus 303 ------~dg~I~vwd~~-~~~~~~~~-----~~~~~i~~l~~~~~~~~~l~~g~~-dg~i~i~d~~-~~~~~--~~~~-- 364 (536)
.+|.+.+|++. .+...... .+...+.+++|+|++ ++|+++.. ++.|.+||+. +++.. ..+.
T Consensus 111 ~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 189 (365)
T 1jof_A 111 ANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAP 189 (365)
T ss_dssp EEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred cceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC
Confidence 68999999997 45443222 245679999999998 67777654 6799999998 66642 2333
Q ss_pred ccCCCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCC--CCCCC-CCcceee-----cccC------ceeEEE-EccCCCe
Q 009380 365 LHEARINTIDFNPRNPNIMATSS-TDGTACIWDLRS--MATDK-PEPMKVL-----SHKR------AVHSAY-FSPSGSS 428 (536)
Q Consensus 365 ~h~~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~--~~~~~-~~~~~~~-----~~~~------~v~~l~-~sp~g~~ 428 (536)
.|...+..++|+|++ +++++++ .++.|.+|++.. ++... ....... +|.. .+..++ |+|+|++
T Consensus 190 ~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~ 268 (365)
T 1jof_A 190 DPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY 268 (365)
T ss_dssp STTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred CCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCE
Confidence 246679999999988 4666555 478999998753 21000 0001111 1222 588999 9999998
Q ss_pred EEEEeCC-C-----cEEEEeCC-CCCcceE---EeccCCCCceeeeeEEEEcC---CCCEEEEEcCC-CcEEEEcCCcc
Q 009380 429 LATTSFD-D-----TIGIWSGV-NFENTSM---IHHNNQTGRWISSFRAIWGW---DDSCVFIGNMT-RTVEVISPAQR 493 (536)
Q Consensus 429 l~t~s~d-g-----~I~iwd~~-~~~~~~~---~~~~~~~~~~~~~~~~~~s~---~g~~l~~gs~d-g~I~v~d~~~~ 493 (536)
|++++.+ + .|.+|++. +++.... +....... . .++|+| +|++|++++.+ +.|.+|++...
T Consensus 269 l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~---~--~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---H--SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT---T--CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc---c--cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 8877643 2 89999986 4443321 21111111 1 256889 89999999875 89999998765
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=1.9e-17 Score=166.37 Aligned_cols=289 Identities=10% Similarity=-0.052 Sum_probs=180.5
Q ss_pred cceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCce-EEEEEEecCCccEEEEEeCCCcEEE
Q 009380 184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRI-TQMKFLPCSDVRMVVAGSKLGNITF 262 (536)
Q Consensus 184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I-~~v~~~p~~~~~~l~tg~~dg~v~i 262 (536)
..+..+.|+|||+.++..... +.+..|.+|++..........+...+ ..+.|+| +|++|+.++.++.|.+
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~-------~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp--dg~~l~~~~~~~~l~~ 106 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDF-------DGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST--DERAFFYVKNELNLMK 106 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECT-------TSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT--TSSEEEEEETTTEEEE
T ss_pred eeeecCcCCCCCCEEEEEEec-------CCCceEEEEECCCCcEEEeecCCCCccccceECC--CCCEEEEEEcCCcEEE
Confidence 347788999999998865221 22336777776544332222233333 3488999 9999999999999999
Q ss_pred EECCCCCCCCCceEEeccCCCCEEE-------------------EEEecCCCCEEEEE-----ECCCeEEEEECCCCeEE
Q 009380 263 WNLDSQQDEDNGIYLFRTHLGPISG-------------------IVTQQYCLSKIFTS-----CYDGLIRLMDAEKEVFD 318 (536)
Q Consensus 263 wd~~~~~~~~~~~~~~~~h~~~V~~-------------------l~~~~~~~~~l~s~-----s~dg~I~vwd~~~~~~~ 318 (536)
|++.+ +.....+..+...... +.|+|++ +.++.+ ..+..|.+||+.++...
T Consensus 107 ~d~~~----~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (396)
T 3c5m_A 107 VDLET----LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLIKVDIETGELE 181 (396)
T ss_dssp EETTT----CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEEEEETTTCCEE
T ss_pred EECCC----CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceEEEEECCCCcEE
Confidence 99986 3433444434332222 3456666 544433 45678999999998887
Q ss_pred EeecCCCceeEEEecC-CCCCEEEEEECC------CeEEEEECCCCccceeEecc--CCCeEEEEEecCCCCEEEEEeCC
Q 009380 319 LVYSSEYAVFSLSQQP-NNVNTLYFGEGQ------GGLNIWDVRSRKSATEWLLH--EARINTIDFNPRNPNIMATSSTD 389 (536)
Q Consensus 319 ~~~~~~~~i~~l~~~~-~~~~~l~~g~~d------g~i~i~d~~~~~~~~~~~~h--~~~i~~i~~~p~~~~~l~s~s~d 389 (536)
.+..+...+..+.|+| ++ ..|+..+.+ ..|.+||+..++.. .+..+ ...+..+.|+|++..+++++..+
T Consensus 182 ~~~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 182 VIHQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp EEEEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred eeccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCC
Confidence 7777778899999999 66 556555543 36889998765432 23223 23578899999985444443322
Q ss_pred ----CcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEe----------------CCCcEEEEeCCCCCc
Q 009380 390 ----GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTS----------------FDDTIGIWSGVNFEN 448 (536)
Q Consensus 390 ----g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s----------------~dg~I~iwd~~~~~~ 448 (536)
+.|++||+.+++ ...+.... ... +.|+| +|+++++++ .+..|.+||+.+++.
T Consensus 260 ~~~~~~l~~~d~~~g~-----~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 260 GQTDRVIYKANPETLE-----NEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp TTCCEEEEEECTTTCC-----EEEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred CCccceEEEEECCCCC-----eEEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 349999998753 22222122 223 89999 999888755 246799999987765
Q ss_pred ceEEeccCCCC-----ceeeeeEEEEcCCCCEEEEEcC-CCc--EEEEcCCcccc
Q 009380 449 TSMIHHNNQTG-----RWISSFRAIWGWDDSCVFIGNM-TRT--VEVISPAQRRS 495 (536)
Q Consensus 449 ~~~~~~~~~~~-----~~~~~~~~~~s~~g~~l~~gs~-dg~--I~v~d~~~~~~ 495 (536)
.....+....+ .......+.|+|+|+.|+..+. ++. |.++++.++..
T Consensus 333 ~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 333 QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 43333221100 0001223679999998877654 454 44445555533
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.76 E-value=1.1e-16 Score=172.57 Aligned_cols=287 Identities=10% Similarity=-0.000 Sum_probs=189.8
Q ss_pred ccccCCceEEEEEEecCCccEEEEE--eCCCcEEEEECCCCCCCCCceEEeccCCCCEE---------EEEEe--cCCCC
Q 009380 230 ARIMPGRITQMKFLPCSDVRMVVAG--SKLGNITFWNLDSQQDEDNGIYLFRTHLGPIS---------GIVTQ--QYCLS 296 (536)
Q Consensus 230 ~~~~~~~I~~v~~~p~~~~~~l~tg--~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~---------~l~~~--~~~~~ 296 (536)
...|...|..++|++ ++-+++.. +.++...||.... ......+..|...+. ...|+ ||+ +
T Consensus 19 ~~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg-~ 91 (662)
T 3azo_A 19 VASRSGRPACVGAVG--DEVWWVAPRPAEAGRATLVRRRA----DGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAG-G 91 (662)
T ss_dssp HHHTCSCCEEEEEET--TEEEEEEEETTTTTEEEEEEECT----TSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSS-S
T ss_pred HhhcCCccceeEEcC--CeEEEEecCcccCCcEEEEEECC----CCCcceeCCCCccccccccccCCccceeeeecCC-C
Confidence 466888999999998 87777777 5678899999743 344566666766666 66676 998 6
Q ss_pred E-EEEEEC-CCeEEEEECC--C-CeEEEeec-----CCCceeEEEecCCCCCEEEEEECC----------CeEEEEECCC
Q 009380 297 K-IFTSCY-DGLIRLMDAE--K-EVFDLVYS-----SEYAVFSLSQQPNNVNTLYFGEGQ----------GGLNIWDVRS 356 (536)
Q Consensus 297 ~-l~s~s~-dg~I~vwd~~--~-~~~~~~~~-----~~~~i~~l~~~~~~~~~l~~g~~d----------g~i~i~d~~~ 356 (536)
. |+.++. +..|.+|++. + +....+.. +...+.+++|+|++ +.|++++.+ ..|++||+.+
T Consensus 92 ~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 92 PLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp CEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred eEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 6 555543 6778888877 3 55555554 56678999999999 778777766 5899999987
Q ss_pred ------CccceeEe-ccCCCeEEEEEecCCCCEEEEEeCC--------CcEEEEeCC-CCCCCCCCcceee-cccCceeE
Q 009380 357 ------RKSATEWL-LHEARINTIDFNPRNPNIMATSSTD--------GTACIWDLR-SMATDKPEPMKVL-SHKRAVHS 419 (536)
Q Consensus 357 ------~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~d--------g~i~iwdl~-~~~~~~~~~~~~~-~~~~~v~~ 419 (536)
++ ...+. .+...+..++|+||| ++|+.++.+ ..|++||+. ++. ......+. .|...+..
T Consensus 171 ~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~--~~~~~~l~~~~~~~~~~ 246 (662)
T 3azo_A 171 SAAADRSA-VRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGR--FADTRTLLGGPEEAIAQ 246 (662)
T ss_dssp TTTTCGGG-SEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSC--EEEEEEEEEETTBCEEE
T ss_pred CccccCCc-eeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCc--ccccEEeCCCCCceEcc
Confidence 44 44454 556778889999998 567666644 379999998 431 00222333 45788999
Q ss_pred EEEccCCCeEEEEeCCC--cEEEEeCCCCCcceEEeccCCCC--ceee-eeEEEEcCCCCEEEEEcCCCcEEEE--cCCc
Q 009380 420 AYFSPSGSSLATTSFDD--TIGIWSGVNFENTSMIHHNNQTG--RWIS-SFRAIWGWDDSCVFIGNMTRTVEVI--SPAQ 492 (536)
Q Consensus 420 l~~sp~g~~l~t~s~dg--~I~iwd~~~~~~~~~~~~~~~~~--~~~~-~~~~~~s~~g~~l~~gs~dg~I~v~--d~~~ 492 (536)
+.|+|+|++++++..++ .|.+||+.+++......+..... .|.. ...+.|++++.++++++. +.++|| |..+
T Consensus 247 ~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~ 325 (662)
T 3azo_A 247 AEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES 325 (662)
T ss_dssp EEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT
T ss_pred eEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC
Confidence 99999999888888888 57777765555433322211111 0100 123668899999999998 998998 5555
Q ss_pred cccceeccCCceeeeeeeE-eecCCCCCEEEEEccCCeEEEE
Q 009380 493 RRSVATLQSPYISAIPCRF-HAHPHQVGTLAGATGGGQVYVW 533 (536)
Q Consensus 493 ~~~~~~l~~~~~~~~~~~~-~~~p~~~~~lasgs~Dg~v~iW 533 (536)
++ +..+..+..... .+ ++.+ +.-++++++.+....||
T Consensus 326 ~~-~~~l~~~~~~~~--~~~s~~~-~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 326 GE-LVDAAGPWTEWA--ATLTVSG-TRAVGVAASPRTAYEVV 363 (662)
T ss_dssp TE-EEECCSSCCEEE--EEEEEET-TEEEEEEEETTEEEEEE
T ss_pred Cc-EEEecCCCCeEE--EEEecCC-CEEEEEEcCCCCCCEEE
Confidence 54 566665433222 33 4443 21234444555444444
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.75 E-value=3.1e-16 Score=153.90 Aligned_cols=246 Identities=10% Similarity=0.031 Sum_probs=178.0
Q ss_pred CCceEEEEEEecCCccEEEEEeCC------------------------CcEEEEECCCCCCCCCceEEec-cCCCCEEEE
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKL------------------------GNITFWNLDSQQDEDNGIYLFR-THLGPISGI 288 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~d------------------------g~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l 288 (536)
-+.+.+|+++| +|+++++...+ +.|.+||..+ +..+..+. ++-.....+
T Consensus 23 l~~v~~va~d~--~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~----g~~~~~~~~~~~~~p~gi 96 (329)
T 3fvz_A 23 PGQVSGVALDS--KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN----AEILQSSGKNLFYLPHGL 96 (329)
T ss_dssp CSCEEEEEECT--TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT----CCEEEEECTTTCSSEEEE
T ss_pred cCCceEEEECC--CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC----CeEEeccCCCccCCceEE
Confidence 46799999999 99999988877 4799999876 44444443 445678999
Q ss_pred EEecCCCCEEEEEECCCeEEEEECCCCe-EEEee----------cCCCceeEEEecCCCCCEEEEEE-CCCeEEEEECCC
Q 009380 289 VTQQYCLSKIFTSCYDGLIRLMDAEKEV-FDLVY----------SSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRS 356 (536)
Q Consensus 289 ~~~~~~~~~l~s~s~dg~I~vwd~~~~~-~~~~~----------~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~ 356 (536)
++++++ +++++...++.|++||..... ....+ .+-.....++++|++.+++++.+ .++.|++|| .+
T Consensus 97 a~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~ 174 (329)
T 3fvz_A 97 SIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PS 174 (329)
T ss_dssp EECTTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TT
T ss_pred EECCCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CC
Confidence 999998 788888889999999987652 22222 22336889999994336777775 689999999 56
Q ss_pred CccceeEecc----------CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee--ecccCceeEEEEcc
Q 009380 357 RKSATEWLLH----------EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV--LSHKRAVHSAYFSP 424 (536)
Q Consensus 357 ~~~~~~~~~h----------~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~--~~~~~~v~~l~~sp 424 (536)
+..+..+... ......|+++|++.+++++...++.|++||..+++ ....+ ..+...+.+++|+|
T Consensus 175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~----~~~~~~~~~~~~~~~~~~~~p 250 (329)
T 3fvz_A 175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE----FVREIKHASFGRNVFAISYIP 250 (329)
T ss_dssp SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC----EEEEECCTTTTTCEEEEEEET
T ss_pred CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc----EEEEEeccccCCCcceeeecC
Confidence 7766666422 23488999999855788888889999999998653 22222 24567788999999
Q ss_pred ------CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 425 ------SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 425 ------~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
+|+.+++...+..|++||..+++.+..+........ ....++++++|.++++...++.|++|++...
T Consensus 251 g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~--~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 251 GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD--MPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS--SEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC--CeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 333333334456899999998887777642222122 2334778999988888888999999998653
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=3e-16 Score=156.01 Aligned_cols=278 Identities=12% Similarity=0.042 Sum_probs=189.0
Q ss_pred ccceEEecccccCcc-ccccccCCceEEEEEEecCCccEEEEEe----------CCCcEEEEECCCCCCCCCceEEecc-
Q 009380 213 VGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRMVVAGS----------KLGNITFWNLDSQQDEDNGIYLFRT- 280 (536)
Q Consensus 213 ~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~~~- 280 (536)
.|+.|.+||...... .....+..+ .++|+| ++++|++++ .++.|.+||+.+ ...+..+..
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~sp--dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t----~~~~~~i~~~ 100 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSN--DGKKIYTMTTYHERITRGKRSDVVEVWDADK----LTFEKEISLP 100 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECT--TSSEEEEEEEEETTSSSSCEEEEEEEEETTT----CCEEEEEEEC
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECC--CCCEEEEEEecccccccCCCCCEEEEEECcC----CcEEEEEEcC
Confidence 467899999643322 112222333 899999 999998886 356799999986 555555543
Q ss_pred -----CCCCEEEEEEecCCCCEEEEEEC--CCeEEEEECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEE
Q 009380 281 -----HLGPISGIVTQQYCLSKIFTSCY--DGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIW 352 (536)
Q Consensus 281 -----h~~~V~~l~~~~~~~~~l~s~s~--dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~ 352 (536)
+......++|+|++ ++|+++.. +++|.+||+.+++.... ..... ...+.+.|++...+++.+.||.+.+|
T Consensus 101 ~~~~~~g~~p~~i~~spdg-~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v 178 (361)
T 2oiz_A 101 PKRVQGLNYDGLFRQTTDG-KFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMTICGDGGLLTI 178 (361)
T ss_dssp TTBCCBCCCGGGEEECTTS-SEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEEEETTSSEEEE
T ss_pred ccccccCCCcceEEECCCC-CEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-cceeEEcCCCCeeEEEECCCCcEEEE
Confidence 23456789999999 88888874 58999999999877665 54433 23356778776788899999999999
Q ss_pred ECCC-Cccce------eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee---c--------cc
Q 009380 353 DVRS-RKSAT------EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL---S--------HK 414 (536)
Q Consensus 353 d~~~-~~~~~------~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~---~--------~~ 414 (536)
++.. ++... .+..+..++ .+.+.|++ ..++..+.++.|.++|+..... ...... . ..
T Consensus 179 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~p 253 (361)
T 2oiz_A 179 NLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEV---KVDGPWSLLNDEDKAKNWVP 253 (361)
T ss_dssp EECTTSSEEEEEECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSC---EEEEEEESCCHHHHHTTCEE
T ss_pred EECCCCcEeeeccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCc---eecccccccCcccccccccc
Confidence 9865 44331 122222222 33446666 4556667889999999975321 111110 0 01
Q ss_pred CceeEEEEccCCCeEEEEeC-----------CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380 415 RAVHSAYFSPSGSSLATTSF-----------DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR 483 (536)
Q Consensus 415 ~~v~~l~~sp~g~~l~t~s~-----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg 483 (536)
.....++|+|+++.++++.. .+.|.+||+.+++.+..+.... ...++|+|+|++|++++. +
T Consensus 254 ~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-------p~~ia~spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 254 GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-------ALSMTIDQQRNLMLTLDG-G 325 (361)
T ss_dssp CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-------CCEEEEETTTTEEEEECS-S
T ss_pred CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-------eeEEEECCCCCEEEEeCC-C
Confidence 22234789999887777643 3479999999998887775332 233779999999999987 9
Q ss_pred cEEEEcCCcc--ccceeccCCceeeeeeeEeecC
Q 009380 484 TVEVISPAQR--RSVATLQSPYISAIPCRFHAHP 515 (536)
Q Consensus 484 ~I~v~d~~~~--~~~~~l~~~~~~~~~~~~~~~p 515 (536)
.|.+||..++ +.+.++...... +..+.++|
T Consensus 326 ~v~v~D~~t~~l~~~~~i~~~G~~--P~~~~~~p 357 (361)
T 2oiz_A 326 NVNVYDISQPEPKLLRTIEGAAEA--SLQVQFHP 357 (361)
T ss_dssp CEEEEECSSSSCEEEEEETTSCSS--EEEEEECC
T ss_pred eEEEEECCCCcceeeEEeccCCCC--cEEEEecC
Confidence 9999999999 888887433222 23567777
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.75 E-value=2e-15 Score=144.72 Aligned_cols=242 Identities=10% Similarity=0.050 Sum_probs=171.8
Q ss_pred cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec------cCCCCEEEEEEe-cCCCCEEEEEEC
Q 009380 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR------THLGPISGIVTQ-QYCLSKIFTSCY 303 (536)
Q Consensus 231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~------~h~~~V~~l~~~-~~~~~~l~s~s~ 303 (536)
..+-..+.+++++| ++.++++...++.|.+|+... ..+..+. +|...+.++++. +++ .++++...
T Consensus 26 ~g~~~~p~~v~~~~--~g~l~v~~~~~~~i~~~d~~g-----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~ 97 (286)
T 1q7f_A 26 EGQFTEPSGVAVNA--QNDIIVADTNNHRIQIFDKEG-----RFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERS 97 (286)
T ss_dssp TTCBSCEEEEEECT--TCCEEEEEGGGTEEEEECTTS-----CEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECG
T ss_pred CCccCCCceEEECC--CCCEEEEECCCCEEEEECCCC-----cEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCC
Confidence 45667799999999 899889888899999999763 3444443 244578999995 554 45554433
Q ss_pred -CCeEEEEECCCCeEEEeec--CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecC
Q 009380 304 -DGLIRLMDAEKEVFDLVYS--SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPR 378 (536)
Q Consensus 304 -dg~I~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~ 378 (536)
++.|.+||. ++.....+. +...+.++++.+++ +++++...++.|.+||.. ++.+..+. .+...+.+|+++|+
T Consensus 98 ~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~ 174 (286)
T 1q7f_A 98 PTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK 174 (286)
T ss_dssp GGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS
T ss_pred CCCEEEEECC-CCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCC
Confidence 899999995 444443332 33578999999988 677776778899999964 55555554 34567899999998
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--cccCceeEEEEccCCCeEEEEeCCC-cEEEEeCCCCCcceEEecc
Q 009380 379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SHKRAVHSAYFSPSGSSLATTSFDD-TIGIWSGVNFENTSMIHHN 455 (536)
Q Consensus 379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~t~s~dg-~I~iwd~~~~~~~~~~~~~ 455 (536)
+ +++++...++.|++||.... ....+. ++...+..++++++|+++++...++ .|.+||. +++.+..+...
T Consensus 175 g-~l~v~~~~~~~i~~~~~~g~-----~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~ 247 (286)
T 1q7f_A 175 Q-EIFISDNRAHCVKVFNYEGQ-----YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK 247 (286)
T ss_dssp S-EEEEEEGGGTEEEEEETTCC-----EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES
T ss_pred C-CEEEEECCCCEEEEEcCCCC-----EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc
Confidence 7 57777777899999997531 222222 2235789999999999888887776 9999995 45555555332
Q ss_pred CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc
Q 009380 456 NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR 494 (536)
Q Consensus 456 ~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~ 494 (536)
.... ....++++++|+++++ +.++.|++|+.....
T Consensus 248 ~~~~---~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 248 VKHA---QCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp SCCS---CEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred CCCC---cceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 2111 2234778999976666 578999999876543
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=6.7e-16 Score=153.46 Aligned_cols=260 Identities=12% Similarity=0.043 Sum_probs=181.3
Q ss_pred CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC----------CCeEEEEECCCCeEEEeec---
Q 009380 256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY----------DGLIRLMDAEKEVFDLVYS--- 322 (536)
Q Consensus 256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~----------dg~I~vwd~~~~~~~~~~~--- 322 (536)
.|+.|.+||..+ .+.+..+..+..+ .++|+|++ ++++++.. ++.|.+||+.+.+......
T Consensus 29 ~d~~v~v~D~~t----~~~~~~i~~g~~p--~i~~spdg-~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~ 101 (361)
T 2oiz_A 29 TESRVHVYDYTN----GKFLGMVPTAFNG--HVQVSNDG-KKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP 101 (361)
T ss_dssp GGCEEEEEETTT----CCEEEEEECCEEE--EEEECTTS-SEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred ccCeEEEEECCC----CeEEEEecCCCCC--ceEECCCC-CEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence 367999999887 5666777766555 89999999 88888863 6789999998876554332
Q ss_pred ----CCCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCcccee-EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380 323 ----SEYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATE-WLLHEARINTIDFNPRNPNIMATSSTDGTACIW 395 (536)
Q Consensus 323 ----~~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~-~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw 395 (536)
+......++++|++ ++|+++.. ++.|.+||+.+++.+.. +. +. ....+.+.|++...+++.+.||.+.+|
T Consensus 102 ~~~~~g~~p~~i~~spdg-~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v 178 (361)
T 2oiz_A 102 KRVQGLNYDGLFRQTTDG-KFIVLQNASPATSIGIVDVAKGDYVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTI 178 (361)
T ss_dssp TBCCBCCCGGGEEECTTS-SEEEEEEESSSEEEEEEETTTTEEEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEE
T ss_pred cccccCCCcceEEECCCC-CEEEEECCCCCCeEEEEECCCCcEEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEE
Confidence 23457789999999 78887763 57999999999987776 44 22 223366788776788899999999999
Q ss_pred eCCCCCCCCCCcc------eee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcce--EEeccC----CCCc-e
Q 009380 396 DLRSMATDKPEPM------KVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTS--MIHHNN----QTGR-W 461 (536)
Q Consensus 396 dl~~~~~~~~~~~------~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~--~~~~~~----~~~~-~ 461 (536)
++.... ... ... ....+ ..+.++|++..++..+.++.|.++|+....... .+.... ..+. .
T Consensus 179 ~~~~~g----~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p 253 (361)
T 2oiz_A 179 NLGEDG----KVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP 253 (361)
T ss_dssp EECTTS----SEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE
T ss_pred EECCCC----cEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccccc
Confidence 986521 111 011 11122 233446778778888889999999986543221 111000 0000 0
Q ss_pred eeeeEEEEcCCCCEEEEEcC-----------CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeE
Q 009380 462 ISSFRAIWGWDDSCVFIGNM-----------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQV 530 (536)
Q Consensus 462 ~~~~~~~~s~~g~~l~~gs~-----------dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v 530 (536)
.....++|++++..++++.. .+.|.+||..+++.+.++..+. +..+.++| ++.+|++++. +.|
T Consensus 254 ~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~sp-dg~~l~v~n~-~~v 327 (361)
T 2oiz_A 254 GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----ALSMTIDQ-QRNLMLTLDG-GNV 327 (361)
T ss_dssp CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----CCEEEEET-TTTEEEEECS-SCE
T ss_pred CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC----eeEEEECC-CCCEEEEeCC-CeE
Confidence 00011468999888777643 3479999999999999998765 45788999 6689998887 999
Q ss_pred EEEecC
Q 009380 531 YVWTSD 536 (536)
Q Consensus 531 ~iW~~d 536 (536)
.|||.+
T Consensus 328 ~v~D~~ 333 (361)
T 2oiz_A 328 NVYDIS 333 (361)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 999964
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=3.5e-17 Score=164.40 Aligned_cols=275 Identities=14% Similarity=0.073 Sum_probs=179.6
Q ss_pred CceEEEEEEecCCccEEEEEeCC---CcEEEEECCCCCCCCCceEEeccCCCC-EEEEEEecCCCCEEEEEECCCeEEEE
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKL---GNITFWNLDSQQDEDNGIYLFRTHLGP-ISGIVTQQYCLSKIFTSCYDGLIRLM 310 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~~l~s~s~dg~I~vw 310 (536)
..+.+++|+| +|++|+..... ..|.+|++.+ +.. ..+..+... ...+.|+|++ ++|+.++.++.|++|
T Consensus 36 ~~~~~~~~Sp--dG~~l~~~~~~~g~~~l~~~d~~~----~~~-~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~ 107 (396)
T 3c5m_A 36 NYFYQKCFTQ--DGKKLLFAGDFDGNRNYYLLNLET----QQA-VQLTEGKGDNTFGGFISTDE-RAFFYVKNELNLMKV 107 (396)
T ss_dssp CCTTSCCBCT--TSCEEEEEECTTSSCEEEEEETTT----TEE-EECCCSSCBCTTTCEECTTS-SEEEEEETTTEEEEE
T ss_pred eeeecCcCCC--CCCEEEEEEecCCCceEEEEECCC----CcE-EEeecCCCCccccceECCCC-CEEEEEEcCCcEEEE
Confidence 3477889999 99998877543 3688888875 332 333333333 3347899999 999999999999999
Q ss_pred ECCCCeEEEeecC-CCceeE-------------------EEecCCCCCEEEEE-----ECCCeEEEEECCCCccceeEec
Q 009380 311 DAEKEVFDLVYSS-EYAVFS-------------------LSQQPNNVNTLYFG-----EGQGGLNIWDVRSRKSATEWLL 365 (536)
Q Consensus 311 d~~~~~~~~~~~~-~~~i~~-------------------l~~~~~~~~~l~~g-----~~dg~i~i~d~~~~~~~~~~~~ 365 (536)
|+.++....+... ...... +.|+|++ +.+++. ..+..|.+||+.+++..... .
T Consensus 108 d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~ 185 (396)
T 3c5m_A 108 DLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLIKVDIETGELEVIH-Q 185 (396)
T ss_dssp ETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-E
T ss_pred ECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceEEEEECCCCcEEeec-c
Confidence 9998876655542 222222 3566766 444433 45678999999987754443 5
Q ss_pred cCCCeEEEEEec-CCCCEEEEEeCC------CcEEEEeCCCCCCCCCCcceeecc--cCceeEEEEccCCCeEEEEeCC-
Q 009380 366 HEARINTIDFNP-RNPNIMATSSTD------GTACIWDLRSMATDKPEPMKVLSH--KRAVHSAYFSPSGSSLATTSFD- 435 (536)
Q Consensus 366 h~~~i~~i~~~p-~~~~~l~s~s~d------g~i~iwdl~~~~~~~~~~~~~~~~--~~~v~~l~~sp~g~~l~t~s~d- 435 (536)
+...+..+.|+| ++ ..|+..+.+ ..|.+||+.... ...+..+ ...+..+.|+|+|++|+.++.+
T Consensus 186 ~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 186 DTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSN-----VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp ESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCC-----CEESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred CCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCc-----eeEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 677899999999 66 455554433 368889986532 2222222 3357889999999988777654
Q ss_pred ----CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcC-CCCEEEEEc----------------CCCcEEEEcCCccc
Q 009380 436 ----DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGW-DDSCVFIGN----------------MTRTVEVISPAQRR 494 (536)
Q Consensus 436 ----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~~gs----------------~dg~I~v~d~~~~~ 494 (536)
+.|++||+.+++........ + .. +.|+| +|++|++++ .+..|.+||+.+++
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l~~~~---~--~~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 260 GQTDRVIYKANPETLENEEVMVMP---P--CS---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp TTCCEEEEEECTTTCCEEEEEECC---S--EE---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred CCccceEEEEECCCCCeEEeeeCC---C--CC---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 44999999877654332211 1 11 67999 999888754 34689999998875
Q ss_pred cceeccCCceee---------eeeeEeecCCCCCEEEEEc-cCCeEEEEec
Q 009380 495 SVATLQSPYISA---------IPCRFHAHPHQVGTLAGAT-GGGQVYVWTS 535 (536)
Q Consensus 495 ~~~~l~~~~~~~---------~~~~~~~~p~~~~~lasgs-~Dg~v~iW~~ 535 (536)
. ..+..+.... ......|+| ++..|+.++ .++...||.+
T Consensus 332 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 332 A-QKLCKHSTSWDVLDGDRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp C-CEEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEE
T ss_pred e-EEccCCCCccccccccccCCCCCceEcc-CCCeEEEEecCCCCceEEEE
Confidence 4 3443322211 123467888 567777665 4566666654
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=2.4e-15 Score=144.14 Aligned_cols=239 Identities=8% Similarity=0.054 Sum_probs=167.8
Q ss_pred cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec------CCCceeEEEec-CCCCCEEEEEEC-CCeEEE
Q 009380 280 THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS------SEYAVFSLSQQ-PNNVNTLYFGEG-QGGLNI 351 (536)
Q Consensus 280 ~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~------~~~~i~~l~~~-~~~~~~l~~g~~-dg~i~i 351 (536)
++-..+.++++++++ .++++...++.|.+||........+.. +...+.++++. +++ +++++... ++.|.+
T Consensus 27 g~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTC-CEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCC-CEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCCCCEEEE
Confidence 445678999999998 888888889999999988543333221 22468899994 554 44444433 789999
Q ss_pred EECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee---cccCceeEEEEccCCC
Q 009380 352 WDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL---SHKRAVHSAYFSPSGS 427 (536)
Q Consensus 352 ~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~---~~~~~v~~l~~sp~g~ 427 (536)
|| .+++.+..+. .+...+.+|++.|++ +++++...++.|.+||... ...... .+...+.+++++|+|+
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g------~~~~~~~~~~~~~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNG------NVLHKFGCSKHLEFPNGVVVNDKQE 176 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTS------CEEEEEECTTTCSSEEEEEECSSSE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCC------CEEEEeCCCCccCCcEEEEECCCCC
Confidence 99 5676666664 344678999999987 6888877789999999653 222222 3445789999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC-cEEEEcCCccccceeccCCceee
Q 009380 428 SLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR-TVEVISPAQRRSVATLQSPYISA 506 (536)
Q Consensus 428 ~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg-~I~v~d~~~~~~~~~l~~~~~~~ 506 (536)
++++...++.|.+||.. ++.+..+....... ....++++++|.++++...++ .|.+|+.. ++.+..+..+....
T Consensus 177 l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~---~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~ 251 (286)
T 1q7f_A 177 IFISDNRAHCVKVFNYE-GQYLRQIGGEGITN---YPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHA 251 (286)
T ss_dssp EEEEEGGGTEEEEEETT-CCEEEEESCTTTSC---SEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCS
T ss_pred EEEEECCCCEEEEEcCC-CCEEEEEccCCccC---CCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCC
Confidence 88887889999999974 44444442211111 223377899998888887776 99999964 55666665443333
Q ss_pred eeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 507 IPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 507 ~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
.+..++++| ++.++++ +.|+.|++|++
T Consensus 252 ~~~~i~~~~-~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 252 QCFDVALMD-DGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp CEEEEEEET-TTEEEEE-ETTTEEEEEEC
T ss_pred cceeEEECC-CCcEEEE-CCCCeEEEEEc
Confidence 345678888 5566666 67999999986
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.74 E-value=2.3e-16 Score=170.01 Aligned_cols=289 Identities=8% Similarity=-0.057 Sum_probs=186.9
Q ss_pred ecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceE---------EEEEE--ecC
Q 009380 179 IKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRIT---------QMKFL--PCS 246 (536)
Q Consensus 179 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~---------~v~~~--p~~ 246 (536)
+.+|...+..+.+++++..++.. +...++...||.+... ....+..+...+. ...|+ |
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP-- 88 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAP--------RPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRP-- 88 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEE--------ETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCS--
T ss_pred HhhcCCccceeEEcCCeEEEEec--------CcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeec--
Confidence 56788889999999876555532 2244567788875222 1222334444555 56676 8
Q ss_pred CccE-EEEEeC-CCcEEEEECCCCCCCCCceEEecc-----CCCCEEEEEEecCCCCEEEEEECC----------CeEEE
Q 009380 247 DVRM-VVAGSK-LGNITFWNLDSQQDEDNGIYLFRT-----HLGPISGIVTQQYCLSKIFTSCYD----------GLIRL 309 (536)
Q Consensus 247 ~~~~-l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~-----h~~~V~~l~~~~~~~~~l~s~s~d----------g~I~v 309 (536)
||+. |+.++. +..|.+|++.... ......+.. |...+.+++|+|+| +.|++++.+ ..|++
T Consensus 89 Dg~~~la~~~~~~~~l~~~~~~~~g--~~~~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~ 165 (662)
T 3azo_A 89 AGGPLLVFTHFGDQRLYAFEPDAPG--GAVPRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAA 165 (662)
T ss_dssp SSSCEEEEEBTTTCCEEEECTTSTT--CCCCEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEE
T ss_pred CCCeEEEEEECCCCeEEEEcCCCCC--CCCCEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEE
Confidence 8888 766554 4566666664000 022334444 66778999999999 899888877 58999
Q ss_pred EECCC------CeEEEee-cCCCceeEEEecCCCCCEEEEEECC--------CeEEEEECC-CC---ccceeEeccCCCe
Q 009380 310 MDAEK------EVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQ--------GGLNIWDVR-SR---KSATEWLLHEARI 370 (536)
Q Consensus 310 wd~~~------~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~d--------g~i~i~d~~-~~---~~~~~~~~h~~~i 370 (536)
||+.+ +....+. .+...+..++|+|++ +.|++++.+ ..|++||+. ++ +.......|...+
T Consensus 166 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~ 244 (662)
T 3azo_A 166 VPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAI 244 (662)
T ss_dssp EETTSTTTTCGGGSEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCE
T ss_pred EECCCCccccCCceeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceE
Confidence 99998 7777666 666788899999999 777776644 479999998 56 3333344567889
Q ss_pred EEEEEecCCCCEEEEEeCCC--cEEEEeCCCCCCCCCCcceeecccCc---------eeEEEEccCCCeEEEEeCCCcEE
Q 009380 371 NTIDFNPRNPNIMATSSTDG--TACIWDLRSMATDKPEPMKVLSHKRA---------VHSAYFSPSGSSLATTSFDDTIG 439 (536)
Q Consensus 371 ~~i~~~p~~~~~l~s~s~dg--~i~iwdl~~~~~~~~~~~~~~~~~~~---------v~~l~~sp~g~~l~t~s~dg~I~ 439 (536)
..+.|+|+|. ++++++.++ .|.+||+.+++ ...+..+... +.+++|+|++.++++++. +.++
T Consensus 245 ~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~-----~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~ 317 (662)
T 3azo_A 245 AQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA-----ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAV 317 (662)
T ss_dssp EEEEECTTSC-EEEEECTTSSCEEEEECTTTCC-----EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCE
T ss_pred cceEECCCCe-EEEEECCCCCeEEEEEECCCCc-----eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccE
Confidence 9999999985 888888888 56666665432 2222222111 567899999999999988 9999
Q ss_pred EE--eCCCCCcceEEeccCCCCceeeeeEEEEcCCCCE--EEEEcCCC--cEEEEcCCcccc
Q 009380 440 IW--SGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC--VFIGNMTR--TVEVISPAQRRS 495 (536)
Q Consensus 440 iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~--l~~gs~dg--~I~v~d~~~~~~ 495 (536)
|| |+.+++ ...+... ...+.. + |++++.. +++++.+. .|.++|+.+++.
T Consensus 318 l~~~d~~~~~-~~~l~~~---~~~~~~--~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 318 LGILDPESGE-LVDAAGP---WTEWAA--T-LTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp EEEEETTTTE-EEECCSS---CCEEEE--E-EEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEECCCCc-EEEecCC---CCeEEE--E-EecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 99 554443 3333211 112222 2 2444443 44445554 455566666643
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.72 E-value=3.1e-15 Score=146.75 Aligned_cols=243 Identities=12% Similarity=0.066 Sum_probs=173.8
Q ss_pred CCCEEEEEEecCCCCEEEEEECC------------------------CeEEEEECCCCeEEEeecC--CCceeEEEecCC
Q 009380 282 LGPISGIVTQQYCLSKIFTSCYD------------------------GLIRLMDAEKEVFDLVYSS--EYAVFSLSQQPN 335 (536)
Q Consensus 282 ~~~V~~l~~~~~~~~~l~s~s~d------------------------g~I~vwd~~~~~~~~~~~~--~~~i~~l~~~~~ 335 (536)
-+.+.+|+++|++ +++++.+.+ +.|.+||..++.+...... -..+..++++++
T Consensus 23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 4679999999998 888887777 4799999998877665543 347889999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCc-cceeE---------eccCCCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCC
Q 009380 336 NVNTLYFGEGQGGLNIWDVRSRK-SATEW---------LLHEARINTIDFNPRNPNIMATSS-TDGTACIWDLRSMATDK 404 (536)
Q Consensus 336 ~~~~l~~g~~dg~i~i~d~~~~~-~~~~~---------~~h~~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~~~~~~ 404 (536)
+ +++++...++.|++||..... .+..+ ..+......|+++|++.+++++.+ .++.|++||.. +
T Consensus 102 g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g---- 175 (329)
T 3fvz_A 102 G-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-G---- 175 (329)
T ss_dssp S-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-S----
T ss_pred C-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-C----
Confidence 8 677777788999999976442 45555 234457899999994447888876 68999999943 2
Q ss_pred CCcceeec-----------ccCceeEEEEccC-CCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcC-
Q 009380 405 PEPMKVLS-----------HKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGW- 471 (536)
Q Consensus 405 ~~~~~~~~-----------~~~~v~~l~~sp~-g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~- 471 (536)
......+ +-.....++++|+ +.++++...++.|++||..+++.+..+..... +.... .+.|+|
T Consensus 176 -~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~-~~~~~--~~~~~pg 251 (329)
T 3fvz_A 176 -KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF-GRNVF--AISYIPG 251 (329)
T ss_dssp -CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT-TTCEE--EEEEETT
T ss_pred -CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc-CCCcc--eeeecCC
Confidence 2222222 2234889999998 77777777889999999987877766643222 22222 356777
Q ss_pred -----CCCEEEEEcCCCcEEEEcCCccccceeccCC-ceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 472 -----DDSCVFIGNMTRTVEVISPAQRRSVATLQSP-YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 472 -----~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~-~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
+|..+++...+..|.+|+..+++.+..+... .....+..++++| ++.++++...++.|++|+++
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEE
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCC
Confidence 3333333344568999999999888877421 1112245778888 56888899999999999863
No 177
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.72 E-value=2.1e-15 Score=147.91 Aligned_cols=272 Identities=8% Similarity=-0.020 Sum_probs=184.8
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK 314 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~ 314 (536)
..|.++.|+| ++..++..+.++.++.|. ......+..+...+.+++|++++ .+++++..++.|.+||..+
T Consensus 6 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~ 75 (333)
T 2dg1_A 6 QDLPTLFYSG--KSNSAVPIISESELQTIT-------AEPWLEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPET 75 (333)
T ss_dssp CCCCBCCSCG--GGGCSSCCCCGGGSCEEE-------CEEEEEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTT
T ss_pred cccceeeecC--CccceeEEeecccCcccc-------cceeEEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCC
Confidence 4567788888 777777667788999992 34566677777788999999998 7777888899999999998
Q ss_pred CeEEEee-cCCCceeEEEecCCCCCEEEEEECC----CeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEEe
Q 009380 315 EVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQ----GGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 315 ~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~d----g~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s 387 (536)
+....+. .+...+.++++++++ +++++...+ +.|.+||..++.....+. .+...+.++.+.|++ +++++..
T Consensus 76 ~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~ 153 (333)
T 2dg1_A 76 KEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDF 153 (333)
T ss_dssp CCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEEC
T ss_pred CcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC-CEEEEec
Confidence 8776554 456789999999998 666666555 689999998776543332 244679999999987 5666654
Q ss_pred C------CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEE-EeCCCcEEEEeCCC-CCcceEEe----cc
Q 009380 388 T------DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLAT-TSFDDTIGIWSGVN-FENTSMIH----HN 455 (536)
Q Consensus 388 ~------dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t-~s~dg~I~iwd~~~-~~~~~~~~----~~ 455 (536)
. .+.|..||..++ ....+..+...+..++|+|+|+.|+. .+.++.|.+||+.+ +.....+. ..
T Consensus 154 ~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~ 228 (333)
T 2dg1_A 154 RGYSTNPLGGVYYVSPDFR-----TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY 228 (333)
T ss_dssp CCBTTBCCEEEEEECTTSC-----CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred cccccCCCceEEEEeCCCC-----EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEe
Confidence 3 245666665542 22233334456789999999986654 45678999999864 33332211 00
Q ss_pred CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCcee----eeeeeEeecCCCCCEEEEEccC
Q 009380 456 NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYIS----AIPCRFHAHPHQVGTLAGATGG 527 (536)
Q Consensus 456 ~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~----~~~~~~~~~p~~~~~lasgs~D 527 (536)
...... ...++++++|.++++...++.|.+||.. ++.+..+..+... ..+..++|+| ++..|+.++.+
T Consensus 229 ~~~~~~--~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 229 FTGHEG--PDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIP-GTNQLIICSND 300 (333)
T ss_dssp CCSSSE--EEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECT-TSCEEEEEEEC
T ss_pred cCCCCC--CCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECC-CCCEEEEEeCc
Confidence 011112 2236789999888777778899999984 5565555433210 0234567777 45666655554
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.71 E-value=6.2e-15 Score=144.57 Aligned_cols=273 Identities=11% Similarity=0.016 Sum_probs=178.9
Q ss_pred eeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEEC
Q 009380 186 FKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNL 265 (536)
Q Consensus 186 v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~ 265 (536)
|.++.|++++..+... ..++.+..|. ..+......+...+.+++|+| ++.+++++..++.|.+||.
T Consensus 8 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~g~l~~~~~~~~~i~~~d~ 73 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPI----------ISESELQTIT--AEPWLEISKKGLQLEGLNFDR--QGQLFLLDVFEGNIFKINP 73 (333)
T ss_dssp CCBCCSCGGGGCSSCC----------CCGGGSCEEE--CEEEEEEESSCCCEEEEEECT--TSCEEEEETTTCEEEEECT
T ss_pred cceeeecCCccceeEE----------eecccCcccc--cceeEEEeccCccccCcEECC--CCCEEEEECCCCEEEEEeC
Confidence 5566777777666533 2334555552 122222334556789999999 9998888888999999998
Q ss_pred CCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC----CeEEEEECCCCeEEEee---cCCCceeEEEecCCCCC
Q 009380 266 DSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD----GLIRLMDAEKEVFDLVY---SSEYAVFSLSQQPNNVN 338 (536)
Q Consensus 266 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d----g~I~vwd~~~~~~~~~~---~~~~~i~~l~~~~~~~~ 338 (536)
.+ .........+...+.+++|++++ .++++...+ +.|.+||..++...... .....+.+++++|++ +
T Consensus 74 ~~----~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~ 147 (333)
T 2dg1_A 74 ET----KEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-G 147 (333)
T ss_dssp TT----CCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-C
T ss_pred CC----CcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC-C
Confidence 76 33333333566789999999998 777777666 68999999887665332 234578999999988 6
Q ss_pred EEEEEEC------CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcce---
Q 009380 339 TLYFGEG------QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMK--- 409 (536)
Q Consensus 339 ~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~--- 409 (536)
++++... .+.|..+|..+++.. .+..+...+..++|+|++..++++.+.++.|.+||+.... .....
T Consensus 148 l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g---~~~~~~~~ 223 (333)
T 2dg1_A 148 FYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDG---VTIQPFGA 223 (333)
T ss_dssp EEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS---SSEEEEEE
T ss_pred EEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCC---cCcccccc
Confidence 6555443 356777776655433 3333445688999999884455666667899999986421 01110
Q ss_pred --ee--cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC-CCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380 410 --VL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ-TGRWISSFRAIWGWDDSCVFIGNMTR 483 (536)
Q Consensus 410 --~~--~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~l~~gs~dg 483 (536)
.. .....+..++++++|+++++...++.|.+||. +++....+..... .+.......++|++++..|++++.++
T Consensus 224 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 224 TIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred eEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 11 11146788999999998888778899999998 4555555432211 11111223367889987877766653
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=3.4e-14 Score=148.65 Aligned_cols=309 Identities=9% Similarity=-0.013 Sum_probs=203.3
Q ss_pred cccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECC--CCCCCCCceEEeccCCCCEEE
Q 009380 210 KIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLD--SQQDEDNGIYLFRTHLGPISG 287 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~--~~~~~~~~~~~~~~h~~~V~~ 287 (536)
....++.|.++|.......-.-.....+..+.|+| ||+++++++.++.|.+||+. + ...+..+.... ....
T Consensus 172 ~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t----~~~v~~i~~G~-~P~~ 244 (567)
T 1qks_A 172 TLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKE----PTTVAEIKIGS-EARS 244 (567)
T ss_dssp EETTTTEEEEEETTTCCEEEEEECSSCEEEEEECT--TSCEEEEEETTSEEEEEETTSSS----CCEEEEEECCS-EEEE
T ss_pred EeCCCCeEEEEECCCCeEEEEEeCCCCccceEECC--CCCEEEEEcCCCeEEEEECCCCC----CcEeEEEecCC-CCce
Confidence 44667899999975443221112344678999999 99999999999999999995 4 45666665533 4578
Q ss_pred EEEe----cCCCCEEEEEEC-CCeEEEEECCCCeEEEeecC------------CCceeEEEecCCCCCEEEEEECCCeEE
Q 009380 288 IVTQ----QYCLSKIFTSCY-DGLIRLMDAEKEVFDLVYSS------------EYAVFSLSQQPNNVNTLYFGEGQGGLN 350 (536)
Q Consensus 288 l~~~----~~~~~~l~s~s~-dg~I~vwd~~~~~~~~~~~~------------~~~i~~l~~~~~~~~~l~~g~~dg~i~ 350 (536)
++|+ |+| ++++++.+ +++|.++|..+.+....... ...+..+..+++++.+++....+|.|.
T Consensus 245 ia~s~~~~pDG-k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~ 323 (567)
T 1qks_A 245 IETSKMEGWED-KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 323 (567)
T ss_dssp EEECCSTTCTT-TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eEEccccCCCC-CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence 9999 698 77776655 59999999988766544321 125778888888766666666779999
Q ss_pred EEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee---ecccCceeEEEEccCC
Q 009380 351 IWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV---LSHKRAVHSAYFSPSG 426 (536)
Q Consensus 351 i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~---~~~~~~v~~l~~sp~g 426 (536)
++|..+.+.+.... .......++.|+|++.++++++..++.|.++|+.+++.. ..... ..|.+.-..+ ++|++
T Consensus 324 ~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~--~~i~vgg~~Phpg~g~~~-~~p~~ 400 (567)
T 1qks_A 324 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV--AIEDTGGQTPHPGRGANF-VHPTF 400 (567)
T ss_dssp EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE--EEEECSSSSBCCTTCEEE-EETTT
T ss_pred EEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE--EEEeccCcCCCCccceee-ECCCC
Confidence 99998754322211 244567789999998655666667889999999986411 11111 1233222122 68875
Q ss_pred C-eEEEEe-CCCcEEEEeCCC-------CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC-------CCcEEEEcC
Q 009380 427 S-SLATTS-FDDTIGIWSGVN-------FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM-------TRTVEVISP 490 (536)
Q Consensus 427 ~-~l~t~s-~dg~I~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~-------dg~I~v~d~ 490 (536)
. .++++. .++.|.++|..+ ++.+..+..... + .+.+..+|++++|++... .+.|.|||+
T Consensus 401 g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~-g----~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 401 GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-G----SLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-C----CCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC-C----CEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence 4 444544 468999999987 455555543221 1 122456899999998763 358999999
Q ss_pred Ccc-----ccc-eeccC------CceeeeeeeEeecCCCCCEEEEEc-----cCCeEEEEec
Q 009380 491 AQR-----RSV-ATLQS------PYISAIPCRFHAHPHQVGTLAGAT-----GGGQVYVWTS 535 (536)
Q Consensus 491 ~~~-----~~~-~~l~~------~~~~~~~~~~~~~p~~~~~lasgs-----~Dg~v~iW~~ 535 (536)
.+. ... ..+.. ......+..+.|+| +|..+..+. .++.|.|+|.
T Consensus 476 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~s~~~~~~~~~~i~v~D~ 536 (567)
T 1qks_A 476 KAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDD 536 (567)
T ss_dssp GGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEET
T ss_pred CcccccccCCCcEEeccccccccCCCCcceEeeeECC-CCCEEEEEeecCCCCCCcEEEEEC
Confidence 876 211 22210 01122335788888 566666553 3799999885
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.69 E-value=1.2e-14 Score=143.32 Aligned_cols=257 Identities=12% Similarity=0.040 Sum_probs=166.7
Q ss_pred ceEEEEEEecCCccEEEEE---------eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC--
Q 009380 236 RITQMKFLPCSDVRMVVAG---------SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-- 304 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg---------~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-- 304 (536)
.+..+++ ||+.|+.. ..++.|.+|++.+ +. ...+ ..+..+.|+|+| ++|+.++.+
T Consensus 16 ~~~~~~~----dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~----~~-~~~l----~~~~~~~~SpDg-~~la~~~~~~~ 81 (347)
T 2gop_A 16 YLSDPRT----KGELVAYVLTKANLKDNKYENTIVIENLKN----NA-RRFI----ENATMPRISPDG-KKIAFMRANEE 81 (347)
T ss_dssp EEEEEEE----ETTEEEEEEEEEETTTTEEEEEEEEEETTT----CC-EEEE----ESCEEEEECTTS-SEEEEEEEETT
T ss_pred EcccceE----CCcEEEEEEeecCcccCCccceEEEEeCCC----Cc-eEEc----ccCCCeEECCCC-CEEEEEEeccC
Confidence 3555666 45555543 2256799999986 22 2233 467899999999 888877654
Q ss_pred -C--eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEEC---------------------------CCeEEEEEC
Q 009380 305 -G--LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEG---------------------------QGGLNIWDV 354 (536)
Q Consensus 305 -g--~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~---------------------------dg~i~i~d~ 354 (536)
+ .|.+||+.++....+..... +..++|+|++ +.|++++. ...|.+||+
T Consensus 82 ~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 82 KKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp TTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTS-SEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred CCcceEEEEECCCCceEEEEcCCC-ccceeECCCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 3 48888998888776666555 9999999998 66666653 257999999
Q ss_pred CCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC-------cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCC
Q 009380 355 RSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG-------TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS 427 (536)
Q Consensus 355 ~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg-------~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 427 (536)
.+++.+..+.. . .+..+.|+|++ ++++++.++ ...||.+.++ ....+..+ ..+..+ +|+|+
T Consensus 160 ~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~-----~~~~l~~~-~~~~~~--spdg~ 227 (347)
T 2gop_A 160 ESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDG-----KEEKMFEK-VSFYAV--DSDGE 227 (347)
T ss_dssp TTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETT-----EEEEEEEE-ESEEEE--EECSS
T ss_pred CCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCC-----ceEEeccC-cceeeE--CCCCC
Confidence 98876455554 4 78899999987 677665542 3445544432 23333344 445444 99999
Q ss_pred eEEEEeCC--------CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceec
Q 009380 428 SLATTSFD--------DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATL 499 (536)
Q Consensus 428 ~l~t~s~d--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l 499 (536)
+|+.++.+ ..|.+|| +++...... .....+.. .+.|+ ++ ++++++.++.++|| +.+++. ..+
T Consensus 228 ~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~~~~~~~~-~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~ 297 (347)
T 2gop_A 228 RILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD---EVDRGVGQ-AKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPI 297 (347)
T ss_dssp CEEEEECCSSSCCCSSCEEEEEC--SSCEEESST---TCCSEEEE-EEEET-TE-EEEEEEETTEEEEE-EESSSE-EEE
T ss_pred EEEEEEccccCCccccceEEEEC--CCceEeccc---cCCcccCC-ccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEE
Confidence 98887754 3688888 433222111 11112221 16789 88 88999999999999 875544 333
Q ss_pred cCCceeeeeeeEeecCCCCCEEEEEccCCeE-EEEec
Q 009380 500 QSPYISAIPCRFHAHPHQVGTLAGATGGGQV-YVWTS 535 (536)
Q Consensus 500 ~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v-~iW~~ 535 (536)
..+.. .+ ..++|+| .++++++.++.. .||.+
T Consensus 298 ~~~~~-~v-~~~~~s~---~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 298 AKGRH-WI-MGFDVDE---IVVYLKETATRLRELFTW 329 (347)
T ss_dssp ECSSS-EE-EEEEESS---SEEEEEECSSSCCEEEEE
T ss_pred ecCCC-eE-EeeeeeC---cEEEEEcCCCChHHheEe
Confidence 33322 22 4577887 577777777665 77765
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=9e-14 Score=145.46 Aligned_cols=273 Identities=12% Similarity=0.038 Sum_probs=196.3
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC--CCeEEEeecCC
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE--KEVFDLVYSSE 324 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~--~~~~~~~~~~~ 324 (536)
.+.++++...++.|.++|..+ ...+..+.. ...+..+.|+|++ +++++++.|+.|.+||+. +.+........
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t----~~v~~~i~~-g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v~~i~~G 239 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGST----YEIKTVLDT-GYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG 239 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTT----CCEEEEEEC-SSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred CceEEEEeCCCCeEEEEECCC----CeEEEEEeC-CCCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEeEEEecC
Confidence 556777888899999999987 566666654 3457799999999 999999999999999995 66655555555
Q ss_pred CceeEEEec----CCCCCEEEEE-ECCCeEEEEECCCCccceeEec----------cCC-CeEEEEEecCCCCEEEEEeC
Q 009380 325 YAVFSLSQQ----PNNVNTLYFG-EGQGGLNIWDVRSRKSATEWLL----------HEA-RINTIDFNPRNPNIMATSST 388 (536)
Q Consensus 325 ~~i~~l~~~----~~~~~~l~~g-~~dg~i~i~d~~~~~~~~~~~~----------h~~-~i~~i~~~p~~~~~l~s~s~ 388 (536)
.....++|+ |++ ++++++ ..+++|.++|..+.+.+..+.. |.. .+..+..+++++.++++...
T Consensus 240 ~~P~~ia~s~~~~pDG-k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 240 SEARSIETSKMEGWED-KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp SEEEEEEECCSTTCTT-TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCceeEEccccCCCC-CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 667899999 688 566555 4569999999999988777652 212 67889999988777777778
Q ss_pred CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEEec-cC--CCCceeee
Q 009380 389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMIHH-NN--QTGRWISS 464 (536)
Q Consensus 389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~~~-~~--~~~~~~~~ 464 (536)
+|.|.++|....+ ...............+.|+|+|++|++++ .++.|.++|+.+++....+.. .. ..++...
T Consensus 319 ~g~v~~vd~~~~~---~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~- 394 (567)
T 1qks_A 319 TGKILLVDYTDLN---NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN- 394 (567)
T ss_dssp TTEEEEEETTCSS---EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-
T ss_pred CCeEEEEecCCCc---cceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-
Confidence 8999999987642 11122234455677899999999887766 578899999999887666643 11 1112221
Q ss_pred eEEEEcCCCCE-EEEEc-CCCcEEEEcCCc-------cccceeccCCceeeeeeeEeecCCCCCEEEEEcc-------CC
Q 009380 465 FRAIWGWDDSC-VFIGN-MTRTVEVISPAQ-------RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-------GG 528 (536)
Q Consensus 465 ~~~~~s~~g~~-l~~gs-~dg~I~v~d~~~-------~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~-------Dg 528 (536)
.++|++.. ++++. .++.|.++|..+ .+.+.++...... .+.+..|| ++.+|.+... ++
T Consensus 395 ---~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g--~~~i~~~p-~~~~l~v~~~~~~~~~~~~ 468 (567)
T 1qks_A 395 ---FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG--SLFIKTHP-NSQYLYVDATLNPEAEISG 468 (567)
T ss_dssp ---EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC--CCCEECCT-TCSEEEEECTTCSSHHHHT
T ss_pred ---eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC--CEEEEeCC-CCCeEEEecCCCCCcccCc
Confidence 14777444 44443 458999999987 5567777654322 23467888 5577777652 45
Q ss_pred eEEEEecC
Q 009380 529 QVYVWTSD 536 (536)
Q Consensus 529 ~v~iW~~d 536 (536)
.|.|+|++
T Consensus 469 ~v~v~d~~ 476 (567)
T 1qks_A 469 SVAVFDIK 476 (567)
T ss_dssp CEEEEEGG
T ss_pred eEEEEECC
Confidence 89999863
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.67 E-value=1.7e-14 Score=142.17 Aligned_cols=262 Identities=11% Similarity=0.100 Sum_probs=166.8
Q ss_pred ceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC---C--c
Q 009380 185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL---G--N 259 (536)
Q Consensus 185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d---g--~ 259 (536)
.+..+.+ ||+.++....... ......++.|.+|++.......+ ..+..++|+| ||++|+..+.+ + .
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKAN-LKDNKYENTIVIENLKNNARRFI----ENATMPRISP--DGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEE-TTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECT--TSSEEEEEEEETTTTEEE
T ss_pred EcccceE--CCcEEEEEEeecC-cccCCccceEEEEeCCCCceEEc----ccCCCeEECC--CCCEEEEEEeccCCCcce
Confidence 3445556 8888776522211 11223466888888755433222 6789999999 99999887654 3 3
Q ss_pred EEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC---------------------------CeEEEEEC
Q 009380 260 ITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---------------------------GLIRLMDA 312 (536)
Q Consensus 260 v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---------------------------g~I~vwd~ 312 (536)
|.+|++.+ +........ .. +..+.|+|++ +.|+.++.+ ..|.+||+
T Consensus 87 l~~~~~~~----g~~~~l~~~-~~-~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 87 IWVADLET----LSSKKILEA-KN-IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp EEEEETTT----TEEEEEEEE-SE-EEEEEECTTS-SEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred EEEEECCC----CceEEEEcC-CC-ccceeECCCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 77778775 333333333 33 9999999999 877777642 57999999
Q ss_pred CCCeE-EEeecCCCceeEEEecCCCCCEEEEEECCC---------eEEEEECCCCccceeEeccCCCeEEEEEecCCCCE
Q 009380 313 EKEVF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQG---------GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNI 382 (536)
Q Consensus 313 ~~~~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg---------~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~ 382 (536)
.++.. ..+.. . .+..++|+|++ +++++..++ .|.++| +++ ...+..+ ..+..+ +|+|. .
T Consensus 160 ~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~-~ 228 (347)
T 2gop_A 160 ESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV--DSDGE-R 228 (347)
T ss_dssp TTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--EECSS-C
T ss_pred CCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc-eEEeccC-cceeeE--CCCCC-E
Confidence 98876 44444 4 78899999997 777765542 455555 444 3444444 455544 99885 4
Q ss_pred EEEEeCC--------CcEEEEeCCCCCCCCCCcceee-cccCceeE-EEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE
Q 009380 383 MATSSTD--------GTACIWDLRSMATDKPEPMKVL-SHKRAVHS-AYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI 452 (536)
Q Consensus 383 l~s~s~d--------g~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~-l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~ 452 (536)
|+.++.+ ..|.+|| ++ ....+. .+...+.. +.|+ ++ ++++++.++.++|| +.+++....+
T Consensus 229 l~~~~~~~~~~~~~~~~l~~~d--~~-----~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~ 298 (347)
T 2gop_A 229 ILLYGKPEKKYMSEHNKLYIYD--GK-----EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA 298 (347)
T ss_dssp EEEEECCSSSCCCSSCEEEEEC--SS-----CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE
T ss_pred EEEEEccccCCccccceEEEEC--CC-----ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe
Confidence 5554433 3688888 32 222222 45677886 9999 88 88999999999999 8754432222
Q ss_pred eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE-EEEcCC
Q 009380 453 HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV-EVISPA 491 (536)
Q Consensus 453 ~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I-~v~d~~ 491 (536)
.+ ...+. .+.|++ .++++++.++.. .||.+.
T Consensus 299 ~~----~~~v~--~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 299 KG----RHWIM--GFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp CS----SSEEE--EEEESS--SEEEEEECSSSCCEEEEES
T ss_pred cC----CCeEE--eeeeeC--cEEEEEcCCCChHHheEeC
Confidence 21 22233 366888 577777666553 666655
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.66 E-value=2.7e-14 Score=139.89 Aligned_cols=260 Identities=7% Similarity=-0.033 Sum_probs=179.4
Q ss_pred CCCcEEEEECCCCCCCCCceEEe------ccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeE
Q 009380 256 KLGNITFWNLDSQQDEDNGIYLF------RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFS 329 (536)
Q Consensus 256 ~dg~v~iwd~~~~~~~~~~~~~~------~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~ 329 (536)
.++.|.+||..+. .....+ .........+.+.. + .++++...++.|.+||..+++....+........
T Consensus 15 ~~~~l~~~d~~t~----~~~~~i~~~~n~~~lg~~~~~i~~~~-~-~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~ 88 (328)
T 3dsm_A 15 SNATLSYYDPATC----EVENEVFYRANGFKLGDVAQSMVIRD-G-IGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRY 88 (328)
T ss_dssp CCBEEEEEETTTT----EEECSHHHHHHSSCCBSCEEEEEEET-T-EEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEE
T ss_pred CCceEEEEECCCC----EEhhhhHhhhcCcccCccceEEEEEC-C-EEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcE
Confidence 4789999999873 322222 11224467787753 2 5566666689999999999888666666678899
Q ss_pred EEecCCCCCEEEEEE-CCCeEEEEECCCCccceeEeccC-----CCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCC
Q 009380 330 LSQQPNNVNTLYFGE-GQGGLNIWDVRSRKSATEWLLHE-----ARINTIDFNPRNPNIMATSS-TDGTACIWDLRSMAT 402 (536)
Q Consensus 330 l~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~h~-----~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~~~~ 402 (536)
+++++++ .++++. .++.|.+||+.+++....+.... .....|++ . +..++++.. .++.|.+||+.+++
T Consensus 89 i~~~~~g--~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~- 163 (328)
T 3dsm_A 89 IHFLSDE--KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDK- 163 (328)
T ss_dssp EEEEETT--EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTE-
T ss_pred EEEeCCC--eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCe-
Confidence 9998886 455555 88999999999998777766332 14567777 3 434555544 48899999998853
Q ss_pred CCCCcceeecccCceeEEEEccCCCeEEEEeCC----------CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCC
Q 009380 403 DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD----------DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD 472 (536)
Q Consensus 403 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 472 (536)
.............+.++|+|++++++..+ +.|.+||..+++....+.... +.. ...++|+|+
T Consensus 164 ----~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~--p~~la~~~d 235 (328)
T 3dsm_A 164 ----VVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDW--PSEVQLNGT 235 (328)
T ss_dssp ----EEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCC--CEEEEECTT
T ss_pred ----EEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCC--ceeEEEecC
Confidence 23333334456789999999977776654 789999998887665554221 211 223778999
Q ss_pred CCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEE----ccCCeEEEEecC
Q 009380 473 DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA----TGGGQVYVWTSD 536 (536)
Q Consensus 473 g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasg----s~Dg~v~iW~~d 536 (536)
++.|++++. .|.+||..+++.............+..++++|.++.++++. ..++.|.+|+.+
T Consensus 236 ~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 236 RDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp SCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred CCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 999988865 89999998887542111111123345788998666777777 678999999864
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.65 E-value=2.1e-13 Score=133.62 Aligned_cols=264 Identities=8% Similarity=-0.063 Sum_probs=180.8
Q ss_pred ccceEEecccccCccc--ccc-----ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCE
Q 009380 213 VGSCVDIGSLTLKPEN--IAR-----IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPI 285 (536)
Q Consensus 213 ~dg~v~lw~~~~~~~~--~~~-----~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V 285 (536)
.++.|.++|....... +.. ........+.+. ++.++++...++.|.+||..+ .+.+..+. .....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~---~~~lyv~~~~~~~v~viD~~t----~~~~~~i~-~~~~p 86 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR---DGIGWIVVNNSHVIFAIDINT----FKEVGRIT-GFTSP 86 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE---TTEEEEEEGGGTEEEEEETTT----CCEEEEEE-CCSSE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE---CCEEEEEEcCCCEEEEEECcc----cEEEEEcC-CCCCC
Confidence 4678899987543221 101 122446778774 456677777789999999997 66666664 34678
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCC------ceeEEEecCCCCCEEEEEE--CCCeEEEEECCCC
Q 009380 286 SGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEY------AVFSLSQQPNNVNTLYFGE--GQGGLNIWDVRSR 357 (536)
Q Consensus 286 ~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~------~i~~l~~~~~~~~~l~~g~--~dg~i~i~d~~~~ 357 (536)
..+++++++ ..+++...++.|.+||+.+++......... ....+++ ++ ..++++. .++.|.+||+.++
T Consensus 87 ~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~-~~lyv~~~~~~~~v~viD~~t~ 162 (328)
T 3dsm_A 87 RYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YG-KYVYVNCWSYQNRILKIDTETD 162 (328)
T ss_dssp EEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ET-TEEEEEECTTCCEEEEEETTTT
T ss_pred cEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--EC-CEEEEEcCCCCCEEEEEECCCC
Confidence 899999987 555554489999999999988765544333 5667777 33 4566665 4789999999999
Q ss_pred ccceeEeccCCCeEEEEEecCCCCEEEEEeCC----------CcEEEEeCCCCCCCCCCcceeec--ccCceeEEEEccC
Q 009380 358 KSATEWLLHEARINTIDFNPRNPNIMATSSTD----------GTACIWDLRSMATDKPEPMKVLS--HKRAVHSAYFSPS 425 (536)
Q Consensus 358 ~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d----------g~i~iwdl~~~~~~~~~~~~~~~--~~~~v~~l~~sp~ 425 (536)
+.+..+.. ......+.++|++ ++++++..+ +.|.+||..+++ +..... .......++|+|+
T Consensus 163 ~~~~~i~~-g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~-----v~~~~~~~~g~~p~~la~~~d 235 (328)
T 3dsm_A 163 KVVDELTI-GIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFT-----VEKQFKFKLGDWPSEVQLNGT 235 (328)
T ss_dssp EEEEEEEC-SSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTE-----EEEEEECCTTCCCEEEEECTT
T ss_pred eEEEEEEc-CCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCe-----EEEEEecCCCCCceeEEEecC
Confidence 88777764 3445788999987 566665544 789999998753 222222 2346899999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCC-CCEEEEE----cCCCcEEEEcCCccccceecc
Q 009380 426 GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD-DSCVFIG----NMTRTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 426 g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~~g----s~dg~I~v~d~~~~~~~~~l~ 500 (536)
+++|+++.. .|.+||..+++........ ..+.. ...++++|+ +.++++. ..++.|.+||.. ++.+.++.
T Consensus 236 ~~~lyv~~~--~v~~~d~~t~~~~~~~~~~-~~~~~--p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 236 RDTLYWINN--DIWRMPVEADRVPVRPFLE-FRDTK--YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp SCEEEEESS--SEEEEETTCSSCCSSCSBC-CCSSC--EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred CCEEEEEcc--EEEEEECCCCceeeeeeec-CCCCc--eEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 998888765 8999999877653211000 00122 223678985 5555555 567899999998 88888775
Q ss_pred C
Q 009380 501 S 501 (536)
Q Consensus 501 ~ 501 (536)
.
T Consensus 310 ~ 310 (328)
T 3dsm_A 310 V 310 (328)
T ss_dssp E
T ss_pred e
Confidence 3
No 185
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.64 E-value=2.3e-12 Score=123.67 Aligned_cols=277 Identities=10% Similarity=-0.006 Sum_probs=182.5
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
...+.++++.+ +|.++++...++.|.+|+.. . .........+...+.++++.+++ .++++...++.|..||..
T Consensus 14 ~~~~~~i~~d~--~g~l~v~~~~~~~v~~~d~~-~---~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 14 DTGPYGITVSD--KGKVWITQHKANMISCINLD-G---KITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRITKK 86 (299)
T ss_dssp SCCEEEEEECT--TSCEEEEETTTTEEEEECTT-C---CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT
T ss_pred CCCccceEECC--CCCEEEEecCCCcEEEEcCC-C---CeEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEECCC
Confidence 45789999999 89888877768899999987 2 22222223355779999999988 777776668899999987
Q ss_pred CCeEEEee--cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee-EeccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380 314 KEVFDLVY--SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE-WLLHEARINTIDFNPRNPNIMATSSTDG 390 (536)
Q Consensus 314 ~~~~~~~~--~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~h~~~i~~i~~~p~~~~~l~s~s~dg 390 (536)
+...... .....+.++++.+++ +++++...++.|.+||. +++.... ...+...+.++++.+++ +++++...++
T Consensus 87 -g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~ 162 (299)
T 2z2n_A 87 -GIIKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN-ALWFTENQNN 162 (299)
T ss_dssp -SCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTT
T ss_pred -CcEEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC-CEEEEeCCCC
Confidence 3333222 234578999999987 66666666789999998 5543322 22345678999999987 6777776678
Q ss_pred cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEc
Q 009380 391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG 470 (536)
Q Consensus 391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s 470 (536)
.|..||. +++ ............+.+++++++|.++++...++.|.+||. ++... .+..... ... ...++++
T Consensus 163 ~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~-~~~--~~~i~~~ 233 (299)
T 2z2n_A 163 AIGRITE-SGD---ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTP-NAR--PHAITAG 233 (299)
T ss_dssp EEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSST-TCC--EEEEEEC
T ss_pred EEEEEcC-CCc---EEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCC-CCC--ceeEEEC
Confidence 9999998 532 111112234456889999999987777667889999998 55432 2221111 112 2336788
Q ss_pred CCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 471 ~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
++|.++++...++.|.+||.. +. +..+........+..+.+ + ++.+.++.+ .+.|..++.
T Consensus 234 ~~g~l~v~~~~~~~i~~~d~~-g~-~~~~~~~~~~~~~~~i~~-~-~g~l~v~~~-~~~l~~~~~ 293 (299)
T 2z2n_A 234 AGIDLWFTEWGANKIGRLTSN-NI-IEEYPIQIKSAEPHGICF-D-GETIWFAME-CDKIGKLTL 293 (299)
T ss_dssp STTCEEEEETTTTEEEEEETT-TE-EEEEECSSSSCCEEEEEE-C-SSCEEEEET-TTEEEEEEE
T ss_pred CCCCEEEeccCCceEEEECCC-Cc-eEEEeCCCCCCccceEEe-c-CCCEEEEec-CCcEEEEEc
Confidence 999876666677899999984 43 333321111112234556 4 556666655 456666654
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.63 E-value=7.9e-14 Score=132.15 Aligned_cols=242 Identities=8% Similarity=0.013 Sum_probs=165.7
Q ss_pred ceEEEEEEecCCccEEE-EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380 236 RITQMKFLPCSDVRMVV-AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK 314 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~-tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~ 314 (536)
...+++++| ++.+++ +...++.|.+|+.... ........+...+.++++.+++ .++++.. ++.|.+||..+
T Consensus 25 ~p~~i~~~~--~g~l~v~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~ 96 (270)
T 1rwi_B 25 SPSGVAVDS--AGNVYVTSEGMYGRVVKLATGST----GTTVLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGS 96 (270)
T ss_dssp CEEEEEECT--TCCEEEEECSSSCEEEEECC---------EECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTC
T ss_pred CccceEECC--CCCEEEEccCCCCcEEEecCCCc----ccceEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCC
Confidence 678999999 888777 5477889999987642 2221112333567889999987 6555554 88999999887
Q ss_pred CeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 009380 315 EVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTAC 393 (536)
Q Consensus 315 ~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~ 393 (536)
....... .....+.++++.+++ +++++...++.|.+|+..+.............+.+|++.+++ +++++...++.|.
T Consensus 97 ~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 97 NNQTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVV 174 (270)
T ss_dssp SCCEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC-CEEEEEGGGTEEE
T ss_pred ceEeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCC-CEEEEECCCCEEE
Confidence 6554333 223578999999987 666666677899999866544332222333467889999987 5777777778999
Q ss_pred EEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCC
Q 009380 394 IWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDD 473 (536)
Q Consensus 394 iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 473 (536)
+||..... .......+...+.+++++++|.++++...++.|.+||....... ..... .. . ....++++++|
T Consensus 175 ~~~~~~~~----~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~~~~-~~-~--~p~~i~~~~~g 245 (270)
T 1rwi_B 175 KLEAESNN----QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPFT-GL-N--TPLAVAVDSDR 245 (270)
T ss_dssp EECTTTCC----EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-ECCCC-SC-S--CEEEEEECTTC
T ss_pred EEecCCCc----eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-eeccC-CC-C--CceeEEECCCC
Confidence 99987632 11111223367889999999977777777889999998654322 21111 11 1 22336789999
Q ss_pred CEEEEEcCCCcEEEEcCCccccc
Q 009380 474 SCVFIGNMTRTVEVISPAQRRSV 496 (536)
Q Consensus 474 ~~l~~gs~dg~I~v~d~~~~~~~ 496 (536)
.++++...++.|.+|+....+.+
T Consensus 246 ~l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 246 TVYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp CEEEEEGGGTEEEEECCCGGGSC
T ss_pred CEEEEECCCCEEEEEcCCCcccc
Confidence 98888888999999998876543
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.63 E-value=1.5e-13 Score=132.33 Aligned_cols=237 Identities=10% Similarity=0.058 Sum_probs=166.8
Q ss_pred cCCceEEEEEEecCCcc-EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEE
Q 009380 233 MPGRITQMKFLPCSDVR-MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD 311 (536)
Q Consensus 233 ~~~~I~~v~~~p~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd 311 (536)
+.....+++|+| +++ +++++..++.|..|+... . ...+..+...+.++++++++ .++++...++.|.+||
T Consensus 26 ~~~~~eg~~~d~--~g~~l~~~~~~~~~i~~~~~~~----~--~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 26 GFTWTEGPVYVP--ARSAVIFSDVRQNRTWAWSDDG----Q--LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQR 96 (296)
T ss_dssp CCSSEEEEEEEG--GGTEEEEEEGGGTEEEEEETTS----C--EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEEC
T ss_pred CCccccCCeEeC--CCCEEEEEeCCCCEEEEEECCC----C--eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEc
Confidence 345578999999 887 888888899999999985 3 66677778889999999998 7777766678999999
Q ss_pred CCCCeEEEeecC-----CCceeEEEecCCCCCEEEE----EE-------------CCCeEEEEECCCCccceeEeccCCC
Q 009380 312 AEKEVFDLVYSS-----EYAVFSLSQQPNNVNTLYF----GE-------------GQGGLNIWDVRSRKSATEWLLHEAR 369 (536)
Q Consensus 312 ~~~~~~~~~~~~-----~~~i~~l~~~~~~~~~l~~----g~-------------~dg~i~i~d~~~~~~~~~~~~h~~~ 369 (536)
..++....+... ...+..+++.|++ +++++ |+ ..+.|..+|.. ++ +..+..+...
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~ 173 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVK 173 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSS
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCC
Confidence 988776544321 2346789999998 67665 32 13466666655 33 4445556677
Q ss_pred eEEEEEecCCCCEEEEEeCCCcEEEEeCC-CCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc
Q 009380 370 INTIDFNPRNPNIMATSSTDGTACIWDLR-SMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN 448 (536)
Q Consensus 370 i~~i~~~p~~~~~l~s~s~dg~i~iwdl~-~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~ 448 (536)
.+.++|+|++ +++++.+.++.|.+||+. .+... .....+..+...+.+++++++|+++++. ++.|.+||.. ++.
T Consensus 174 ~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~-~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~ 248 (296)
T 3e5z_A 174 PNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETE-YQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE 248 (296)
T ss_dssp EEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEE-EEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE
T ss_pred CccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCc-CCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE
Confidence 8999999988 456878888999999987 32100 0011112345567789999999866655 7889999986 555
Q ss_pred ceEEeccCCCCceeeeeEEEE-cCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 449 TSMIHHNNQTGRWISSFRAIW-GWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~-s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
...+..... +. .++| +++++.|++++.++ +.-++..+.
T Consensus 249 ~~~~~~~~~----~~--~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 249 LGRVLTPQT----TS--NLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp EEEEECSSC----CC--EEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred EEEEECCCC----ce--eEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 555543221 22 2567 58899999888764 555566555
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.63 E-value=2.8e-13 Score=130.43 Aligned_cols=237 Identities=10% Similarity=-0.023 Sum_probs=164.2
Q ss_pred CceEEeccCCCCEEEEEEecCCCC-EEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEE
Q 009380 273 NGIYLFRTHLGPISGIVTQQYCLS-KIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNI 351 (536)
Q Consensus 273 ~~~~~~~~h~~~V~~l~~~~~~~~-~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i 351 (536)
..+..+..+.....+++|+|++ + +++++..++.|..||..++ ......+...+.++++++++ +++++...++.|.+
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g-~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPAR-SAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLER 94 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGG-TEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEE
T ss_pred CcEEEEecCCccccCCeEeCCC-CEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEE
Confidence 3445555666778899999998 6 7888888999999999988 55555566789999999998 66666556789999
Q ss_pred EECCCCccceeEec----cCCCeEEEEEecCCCCEEEEE----e-------------CCCcEEEEeCCCCCCCCCCccee
Q 009380 352 WDVRSRKSATEWLL----HEARINTIDFNPRNPNIMATS----S-------------TDGTACIWDLRSMATDKPEPMKV 410 (536)
Q Consensus 352 ~d~~~~~~~~~~~~----h~~~i~~i~~~p~~~~~l~s~----s-------------~dg~i~iwdl~~~~~~~~~~~~~ 410 (536)
||..+++....... ....++.+++.|+| +++++. + ..+.|..+|.. + .....
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-----~~~~~ 167 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-----TLSAP 167 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-----CEEEE
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-C-----CEEEe
Confidence 99988775433221 12356789999988 677763 2 12455556544 2 23344
Q ss_pred ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC-CCCc---ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEE
Q 009380 411 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV-NFEN---TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVE 486 (536)
Q Consensus 411 ~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~ 486 (536)
..+......++|+|+|+.+++.+.++.|.+||+. ++.. ...+ ....+ . ...++++++|+++++. ++.|.
T Consensus 168 ~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~-~--p~~i~~d~~G~l~v~~--~~~v~ 240 (296)
T 3e5z_A 168 IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPG-K--TDGLRVDAGGLIWASA--GDGVH 240 (296)
T ss_dssp ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSS-C--CCSEEEBTTSCEEEEE--TTEEE
T ss_pred ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCC-C--CCeEEECCCCCEEEEc--CCeEE
Confidence 4566678899999999988777788999999986 3433 1222 11111 1 1226789999866655 78899
Q ss_pred EEcCCccccceeccCCceeeeeeeEee-cCCCCCEEEEEccCCeEE
Q 009380 487 VISPAQRRSVATLQSPYISAIPCRFHA-HPHQVGTLAGATGGGQVY 531 (536)
Q Consensus 487 v~d~~~~~~~~~l~~~~~~~~~~~~~~-~p~~~~~lasgs~Dg~v~ 531 (536)
+|+.. ++.+..+..+.. +..++| .| ++..|+.++.+|..+
T Consensus 241 ~~~~~-g~~~~~~~~~~~---~~~~~f~~~-d~~~L~v~t~~~l~~ 281 (296)
T 3e5z_A 241 VLTPD-GDELGRVLTPQT---TSNLCFGGP-EGRTLYMTVSTEFWS 281 (296)
T ss_dssp EECTT-SCEEEEEECSSC---CCEEEEEST-TSCEEEEEETTEEEE
T ss_pred EECCC-CCEEEEEECCCC---ceeEEEECC-CCCEEEEEcCCeEEE
Confidence 99987 667777765443 245566 45 567888888775433
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=2.1e-13 Score=148.09 Aligned_cols=243 Identities=7% Similarity=-0.030 Sum_probs=161.6
Q ss_pred CCCCEEEEEEecCCCCEEEEEECCC-----eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCe-------
Q 009380 281 HLGPISGIVTQQYCLSKIFTSCYDG-----LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG------- 348 (536)
Q Consensus 281 h~~~V~~l~~~~~~~~~l~s~s~dg-----~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~------- 348 (536)
|...+..++|+||| ++|+.++.++ .|++||+.++...........+.+++|+|++ +.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg-~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg-~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 123 GTVALRGYAFSEDG-EYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG-KGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp SCEEEEEEEECTTS-SEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTS-SEEEEEECCCCSSCCSSS
T ss_pred CCEEEEEEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCC-CEEEEEEECCcccccccc
Confidence 44468899999999 8877665543 8999999998876543333347789999998 77887777655
Q ss_pred ---------EEEEECCCCccc--eeEe--ccCCCeEEEEEecCCCCEEEEEeC-----CCcEEEEeCCC------CCCCC
Q 009380 349 ---------LNIWDVRSRKSA--TEWL--LHEARINTIDFNPRNPNIMATSST-----DGTACIWDLRS------MATDK 404 (536)
Q Consensus 349 ---------i~i~d~~~~~~~--~~~~--~h~~~i~~i~~~p~~~~~l~s~s~-----dg~i~iwdl~~------~~~~~ 404 (536)
|++|++.+++.. ..+. .|...+..+.|+|++. +|+.++. +..|++||+.+ +.
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~--- 276 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNGITGI--- 276 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSS---
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccccccCCc---
Confidence 999999887642 2222 2455688999999985 5555543 56899999976 32
Q ss_pred CCcceeecccCceeEEEEccCCCeEEEEeCCC----cEEEEeCCCCCc--ceEEeccCCCCceeeeeEEEEcCCCCEEEE
Q 009380 405 PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD----TIGIWSGVNFEN--TSMIHHNNQTGRWISSFRAIWGWDDSCVFI 478 (536)
Q Consensus 405 ~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg----~I~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 478 (536)
.....+..+...+.. .|+|+|..|+..+..+ .|.+||+.++.. ...+.... ....+.. +.|++++.++++
T Consensus 277 ~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~--~~~~~~~~lv~~ 352 (710)
T 2xdw_A 277 LKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEW--VACVRSNFLVLC 352 (710)
T ss_dssp CCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEE--EEEETTTEEEEE
T ss_pred cceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEE--EEEEcCCEEEEE
Confidence 123444455555554 5889998877766533 599999987642 23332211 1112332 567777778888
Q ss_pred EcCCCc--EEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEE-EE---ccCCeEEEEecC
Q 009380 479 GNMTRT--VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLA-GA---TGGGQVYVWTSD 536 (536)
Q Consensus 479 gs~dg~--I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~la-sg---s~Dg~v~iW~~d 536 (536)
...++. |.+|++.+++.+..+..+... + ..++++| ++..|+ +. ...+.|++||++
T Consensus 353 ~~~~g~~~l~~~~~~~g~~~~~l~~~~~~-v-~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 353 YLHDVKNTLQLHDLATGALLKIFPLEVGS-V-VGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp EEETTEEEEEEEETTTCCEEEEECCCSSE-E-EEEECCT-TCSEEEEEEECSSCCCEEEEEETT
T ss_pred EEECCEEEEEEEECCCCCEEEecCCCCce-E-EEEecCC-CCCEEEEEEeCCCCCCEEEEEECC
Confidence 888874 667787677666777655222 2 4567787 445554 32 245789999863
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.62 E-value=2e-13 Score=130.10 Aligned_cols=238 Identities=10% Similarity=0.059 Sum_probs=174.6
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC-CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC--
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL-GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS-- 323 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~-- 323 (536)
.+++|++++.++.|.+||..+ ++.+..+..+. ..+.++.+.|+| ++|+ +.++.|..||. +++....+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~t----G~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~~~~ 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDT----KEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIAAPA 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTT----TEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEECCT
T ss_pred CCcEEEeeCCCCEEEEEECCC----CeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEcCCC
Confidence 468999999999999999977 77888888776 478899999998 8887 45788999999 6766655543
Q ss_pred CCceeEEEecCCCCCEEEEEEC-CCeEEEEECCCCccceeEec------cCCCeEEEEEecCCCCEEEEEeCCCcEEEEe
Q 009380 324 EYAVFSLSQQPNNVNTLYFGEG-QGGLNIWDVRSRKSATEWLL------HEARINTIDFNPRNPNIMATSSTDGTACIWD 396 (536)
Q Consensus 324 ~~~i~~l~~~~~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~~------h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwd 396 (536)
...+.++.+.+++ +++++.+. ++.|..+|. +++.+..+.. +......+.+.+++ +++++...++.|.+||
T Consensus 76 ~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d 152 (276)
T 3no2_A 76 GCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEVREIA 152 (276)
T ss_dssp TCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEEEEEC
T ss_pred CccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC-CEEEEecCCCEEEEEC
Confidence 3578899999998 78888877 788888885 6777766652 11234566788877 7899999999999999
Q ss_pred CCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCC-ceeeeeEEEEcCCCCE
Q 009380 397 LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTG-RWISSFRAIWGWDDSC 475 (536)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~ 475 (536)
.. ++ .+-.......+.++.+.++|+++++++.++.|..||..+++.+..+......+ .......+...++|.+
T Consensus 153 ~~-G~-----~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i 226 (276)
T 3no2_A 153 PN-GQ-----LLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL 226 (276)
T ss_dssp TT-SC-----EEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred CC-CC-----EEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence 87 53 33333334567788889999999998888899999999999988886432211 1112223556788888
Q ss_pred EEEEc--CC------CcEEEEcC-CccccceeccC
Q 009380 476 VFIGN--MT------RTVEVISP-AQRRSVATLQS 501 (536)
Q Consensus 476 l~~gs--~d------g~I~v~d~-~~~~~~~~l~~ 501 (536)
+++.. .. +..+++.+ .+++.+.++..
T Consensus 227 ~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 227 YICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp EEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred EEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence 77763 11 13345555 46667766654
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.61 E-value=9.7e-14 Score=150.33 Aligned_cols=272 Identities=8% Similarity=-0.013 Sum_probs=166.8
Q ss_pred CccEEEEEeCCC---cEEEEECCCCCCCCCceEEe------ccCCCCEEEEEEecCCCCEEEE-----EECCCeEEEEEC
Q 009380 247 DVRMVVAGSKLG---NITFWNLDSQQDEDNGIYLF------RTHLGPISGIVTQQYCLSKIFT-----SCYDGLIRLMDA 312 (536)
Q Consensus 247 ~~~~l~tg~~dg---~v~iwd~~~~~~~~~~~~~~------~~h~~~V~~l~~~~~~~~~l~s-----~s~dg~I~vwd~ 312 (536)
+|.+++....++ .-.||...... +.....+ .+|...+..++|+||| ++|+. |+.+..|++||+
T Consensus 78 dG~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~l~d~~~~a~~~~~~~~~~~~SPDG-~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 78 RNGRFFYVRTHKDKEKAILYWRQGES--GQEKVLLDPNGWSKDGTVSLGTWAVSWDG-KKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp ETTEEEEEEECTTCSSCEEEEEESTT--SCCEEEECGGGSSSSSCEEEEEEEECTTS-SEEEEEEEETTCSCCEEEEEET
T ss_pred ECCEEEEEEEcCCCeEEEEEEEcCCC--CCcEEEEchHHhccCCCEEEEEEEECCCC-CEEEEEECCCCCceEEEEEEEC
Confidence 777777665543 34455443211 2222222 2455578999999999 77773 333468999999
Q ss_pred CCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCe-------------EEEEECCCCcc----ceeEeccCCCeEEEE
Q 009380 313 EKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGG-------------LNIWDVRSRKS----ATEWLLHEARINTID 374 (536)
Q Consensus 313 ~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~-------------i~i~d~~~~~~----~~~~~~h~~~i~~i~ 374 (536)
.++... ...........++|+|++ ..|+.++.+.. |++|++.++.. +.....|...+.++.
T Consensus 155 ~tg~~~~~~~~~~~~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~ 233 (695)
T 2bkl_A 155 DSGEWSKVDVIEGGKYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD 233 (695)
T ss_dssp TTCCBCSSCCBSCCTTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred CCCCCcCCcccCcccccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence 998764 111111122689999999 78888887665 99999998763 222234556789999
Q ss_pred EecCCCCEEEEEeCCC----cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe---CCCcEEEEeCCCCC
Q 009380 375 FNPRNPNIMATSSTDG----TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS---FDDTIGIWSGVNFE 447 (536)
Q Consensus 375 ~~p~~~~~l~s~s~dg----~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s---~dg~I~iwd~~~~~ 447 (536)
|+|+|. +|+.++.++ .|.+||..++ ....+..+...+....+ ++|.+++.+. .++.|.+||+.++.
T Consensus 234 ~SpDG~-~l~~~~~~~~~~~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 234 LSRDGK-YLFVYILRGWSENDVYWKRPGEK-----DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp ECTTSC-CEEEEEEETTTEEEEEEECTTCS-----SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred ECCCCC-EEEEEEeCCCCceEEEEEcCCCC-----ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence 999995 454444444 5666655432 34445556666666667 5666444443 25789999998765
Q ss_pred c---ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC-ccccceeccCCceeeeeeeEeecCCCCCEEE-
Q 009380 448 N---TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA-QRRSVATLQSPYISAIPCRFHAHPHQVGTLA- 522 (536)
Q Consensus 448 ~---~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~-~~~~~~~l~~~~~~~~~~~~~~~p~~~~~la- 522 (536)
. ...+.+. ....+.. +.|+ ++.++++...|+..+||.+. .+..+..+..+....+ ..++++| ++..|+
T Consensus 307 ~~~~~~l~~~~--~~~~l~~--~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v-~~~~~s~-d~~~l~~ 379 (695)
T 2bkl_A 307 RASWKEIVPED--SSASLLS--VSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAA-SNLMGLE-DLDDAYY 379 (695)
T ss_dssp GGGCEEEECCC--SSCEEEE--EEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEE-CCCBSCT-TCSEEEE
T ss_pred ccCCeEEecCC--CCCeEEE--EEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEE-EEeecCC-CCCEEEE
Confidence 3 2222221 1222333 4566 66788888888887777554 3445555554423232 3567777 456666
Q ss_pred ---EEccCCeEEEEecC
Q 009380 523 ---GATGGGQVYVWTSD 536 (536)
Q Consensus 523 ---sgs~Dg~v~iW~~d 536 (536)
+....+.|++||++
T Consensus 380 ~~ss~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 380 VFTSFTTPRQIYKTSVS 396 (695)
T ss_dssp EEEETTEEEEEEEEETT
T ss_pred EEcCCCCCCEEEEEECC
Confidence 33455789999863
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=9.6e-14 Score=150.76 Aligned_cols=252 Identities=10% Similarity=-0.074 Sum_probs=171.7
Q ss_pred ccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCc-
Q 009380 181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGN- 259 (536)
Q Consensus 181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~- 259 (536)
+|...+..+.|||||+.++...+.. +.....|.+||+..............+..++|+| ||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~-----G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wsp--Dg~~l~~~~~~~~~ 194 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSAS-----GSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH--DGKGMFYNAYPQQD 194 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEET-----TCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT--TSSEEEEEECCCCS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCC-----CCceEEEEEEECCCCCCCcccccCcccceEEEEe--CCCEEEEEEECCcc
Confidence 3444688899999999999763211 1112379999986543322222233477899999 9999999888766
Q ss_pred ---------------EEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC-----CCeEEEEECCC-----
Q 009380 260 ---------------ITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY-----DGLIRLMDAEK----- 314 (536)
Q Consensus 260 ---------------v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~-----dg~I~vwd~~~----- 314 (536)
|++|++.+.......+.....|...+..+.|+|++ ++|+.++. +..|.+||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECccccccc
Confidence 99999986421112233333456678899999999 88777765 67899999986
Q ss_pred -C--eEEEeecCCCceeEEEecCCCCCEEEEEECC----CeEEEEECCCCcc--ceeEeccCC--CeEEEEEecCCCCEE
Q 009380 315 -E--VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ----GGLNIWDVRSRKS--ATEWLLHEA--RINTIDFNPRNPNIM 383 (536)
Q Consensus 315 -~--~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d----g~i~i~d~~~~~~--~~~~~~h~~--~i~~i~~~p~~~~~l 383 (536)
+ ....+..+...+.. .|++++ ..|++.+.. +.|.+||+.++.. ...+..|.. .+..++|++++ .++
T Consensus 274 ~~~~~~~~l~~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv 350 (710)
T 2xdw_A 274 TGILKWVKLIDNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN-FLV 350 (710)
T ss_dssp CSSCCCEEEECSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT-EEE
T ss_pred CCccceEEeeCCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC-EEE
Confidence 4 45555555555554 478887 555555542 3699999988752 355555544 68889999644 688
Q ss_pred EEEeCCCc--EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe----CCCcEEEEeCCCCC
Q 009380 384 ATSSTDGT--ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS----FDDTIGIWSGVNFE 447 (536)
Q Consensus 384 ~s~s~dg~--i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s----~dg~I~iwd~~~~~ 447 (536)
++...|+. |.+||+.+++ ....+..+...+..+.++|++..++... ..++|.+||+.+++
T Consensus 351 ~~~~~~g~~~l~~~~~~~g~----~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 351 LCYLHDVKNTLQLHDLATGA----LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTEEEEEEEETTTCC----EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCEEEEEEEECCCCC----EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 88888875 5667775542 2233344577888999999887665432 34689999998776
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.60 E-value=4.2e-12 Score=121.80 Aligned_cols=281 Identities=8% Similarity=-0.081 Sum_probs=186.6
Q ss_pred cccccceeeeecCCCCcccccccccccccccccccceEEecccccCcccccc--ccCCceEEEEEEecCCccEEEEEeCC
Q 009380 180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIAR--IMPGRITQMKFLPCSDVRMVVAGSKL 257 (536)
Q Consensus 180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~--~~~~~I~~v~~~p~~~~~~l~tg~~d 257 (536)
..+...+.++.++++|.+.... ..++.|..|+.. ....... .+...+.++++.+ ++.++++...+
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~----------~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~ 77 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQ----------HKANMISCINLD-GKITEYPLPTPDAKVMCLTISS--DGEVWFTENAA 77 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEE----------TTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT--TSCEEEEETTT
T ss_pred CCcCCCccceEECCCCCEEEEe----------cCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC--CCCEEEeCCCC
Confidence 3455778899999999877643 234677778765 2222111 2346799999999 88888887778
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee--cCCCceeEEEecCC
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY--SSEYAVFSLSQQPN 335 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~--~~~~~i~~l~~~~~ 335 (536)
+.|..|+... ......+..+...+.++++.+++ .++++...++.|.+||. ++...... .....+.++++.++
T Consensus 78 ~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~ 151 (299)
T 2z2n_A 78 NKIGRITKKG----IIKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD 151 (299)
T ss_dssp TEEEEECTTS----CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred CeEEEECCCC----cEEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC
Confidence 8899998762 21122222345678999999987 77777777889999999 55444332 23457899999998
Q ss_pred CCCEEEEEECCCeEEEEECCCCcccee-EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc
Q 009380 336 NVNTLYFGEGQGGLNIWDVRSRKSATE-WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK 414 (536)
Q Consensus 336 ~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~ 414 (536)
+ +++++...++.|..||. +++.... +..+...+.++++.+++ +++++...++.|.+||. ++. ........+.
T Consensus 152 g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~---~~~~~~~~~~ 224 (299)
T 2z2n_A 152 N-ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-SGE---ITEFKIPTPN 224 (299)
T ss_dssp S-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCC---EEEEECSSTT
T ss_pred C-CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-CCc---EEEEECCCCC
Confidence 7 66666666789999998 6654332 22345668899999987 57776666789999998 542 1111122345
Q ss_pred CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
..+.+++++++|+++++...++.|.+||. ++. ...+..... ...+. .+.+ ++|.++++.+ .+.|..++..++
T Consensus 225 ~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~-~~~~~--~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 225 ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIK-SAEPH--GICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp CCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSS-SCCEE--EEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCC-CCccc--eEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 67899999999986666657789999998 332 222322111 12223 3556 7777666655 566777776654
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.59 E-value=1.2e-13 Score=149.74 Aligned_cols=252 Identities=10% Similarity=-0.076 Sum_probs=172.8
Q ss_pred cccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCce--EEEEEEecCCccEEEEEeCC
Q 009380 180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRI--TQMKFLPCSDVRMVVAGSKL 257 (536)
Q Consensus 180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I--~~v~~~p~~~~~~l~tg~~d 257 (536)
.+|...+..+.|||||+.++...+. .++.+..|++||+...... ...+...+ ..++|+| ||+.|+.++.+
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~-----~G~~~~~i~v~dl~tg~~~-~~~~~~~~~~~~~~wsp--Dg~~l~~~~~d 188 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKP-----NAADEAVLHVIDVDSGEWS-KVDVIEGGKYATPKWTP--DSKGFYYEWLP 188 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEE-----TTCSCCEEEEEETTTCCBC-SSCCBSCCTTCCCEECT--TSSEEEEEECC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECC-----CCCceEEEEEEECCCCCCc-CCcccCcccccceEEec--CCCEEEEEEec
Confidence 3555678899999999999966321 2233468999998654432 01222223 7899999 99999999887
Q ss_pred Cc-------------EEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC----eEEEEECCCCeEEEe
Q 009380 258 GN-------------ITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG----LIRLMDAEKEVFDLV 320 (536)
Q Consensus 258 g~-------------v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg----~I~vwd~~~~~~~~~ 320 (536)
.. |++|++.+.......+.....|...+..+.|+|+| ++|+.++.++ .|.+|+..++....+
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~~~l 267 (695)
T 2bkl_A 189 TDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDFRLL 267 (695)
T ss_dssp CCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSCEEE
T ss_pred CCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCceEEe
Confidence 76 99999987432122344445566789999999999 7777776665 777887766766666
Q ss_pred ecCCCceeEEEecCCCCCEEEEEE---CCCeEEEEECCCCcc--ceeEecc--CCCeEEEEEecCCCCEEEEEeCCCcEE
Q 009380 321 YSSEYAVFSLSQQPNNVNTLYFGE---GQGGLNIWDVRSRKS--ATEWLLH--EARINTIDFNPRNPNIMATSSTDGTAC 393 (536)
Q Consensus 321 ~~~~~~i~~l~~~~~~~~~l~~g~---~dg~i~i~d~~~~~~--~~~~~~h--~~~i~~i~~~p~~~~~l~s~s~dg~i~ 393 (536)
..+...+....+ +++. +++.+. .++.|.+||+.++.. ...+..+ ...+..++|+ ++ .++++...|+..+
T Consensus 268 ~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 268 VKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSE 343 (695)
T ss_dssp EECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEE
T ss_pred ecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEE
Confidence 666666666666 5663 444443 258999999987754 2444433 4568888988 34 7889999999888
Q ss_pred EEeCCC-CCCCCCCcceeec-ccCceeEEEEccCCCeEEEEe----CCCcEEEEeCCCCCc
Q 009380 394 IWDLRS-MATDKPEPMKVLS-HKRAVHSAYFSPSGSSLATTS----FDDTIGIWSGVNFEN 448 (536)
Q Consensus 394 iwdl~~-~~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~t~s----~dg~I~iwd~~~~~~ 448 (536)
||.+.. ++ ....+.. ....+..++++|++..++... ..++|++||+.+++.
T Consensus 344 l~~~~~~g~----~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 344 VRVATLKGK----PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEETTCC----EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEeCCCC----eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 886552 21 2222222 356788889999987766433 346799999987763
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.56 E-value=6.7e-13 Score=125.72 Aligned_cols=238 Identities=5% Similarity=-0.081 Sum_probs=163.5
Q ss_pred ceeeeecCCCCcccc-cccccccccccccccceEEecccccCccccc-cccCCceEEEEEEecCCccEEEEEeCCCcEEE
Q 009380 185 GFKTCKDEGLGVGSC-DLIKGVVKTEKIEVGSCVDIGSLTLKPENIA-RIMPGRITQMKFLPCSDVRMVVAGSKLGNITF 262 (536)
Q Consensus 185 ~v~~~~~s~~~~~l~-~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~-~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~i 262 (536)
....+.++++|++.+ .. ..++.|..|+......... ......+.++++++ ++.++++.. ++.|.+
T Consensus 25 ~p~~i~~~~~g~l~v~~~----------~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~--~g~l~v~~~-~~~i~~ 91 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSE----------GMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG--AGTVYVTDF-NNRVVT 91 (270)
T ss_dssp CEEEEEECTTCCEEEEEC----------SSSCEEEEECC-----EECCCCSCCSCCCEEECT--TCCEEEEET-TTEEEE
T ss_pred CccceEECCCCCEEEEcc----------CCCCcEEEecCCCcccceEeeCCcCCcceeEECC--CCCEEEEcC-CCEEEE
Confidence 456777888887555 32 2346777777533222211 22235688999999 888776666 889999
Q ss_pred EECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEE
Q 009380 263 WNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTL 340 (536)
Q Consensus 263 wd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l 340 (536)
|+.... ....+. .....+.++++.+++ .++++...++.|.+|+..+....... .....+.++++.+++ +++
T Consensus 92 ~d~~~~-----~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~ 164 (270)
T 1rwi_B 92 LAAGSN-----NQTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG-NVY 164 (270)
T ss_dssp ECTTCS-----CCEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC-CEE
T ss_pred EeCCCc-----eEeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCC-CEE
Confidence 998752 222232 233578999999988 77777777899999987655433222 223467899999988 666
Q ss_pred EEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEE
Q 009380 341 YFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSA 420 (536)
Q Consensus 341 ~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l 420 (536)
++...++.|.+||............+...+.+|++.+++ +++++...++.|.+||..... .......+...+.++
T Consensus 165 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~----~~~~~~~~~~~p~~i 239 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTT----STVLPFTGLNTPLAV 239 (270)
T ss_dssp EEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSC----CEECCCCSCSCEEEE
T ss_pred EEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCc----ceeeccCCCCCceeE
Confidence 666667899999987765433323344678999999987 778877778899999986532 111111233578999
Q ss_pred EEccCCCeEEEEeCCCcEEEEeCCCCC
Q 009380 421 YFSPSGSSLATTSFDDTIGIWSGVNFE 447 (536)
Q Consensus 421 ~~sp~g~~l~t~s~dg~I~iwd~~~~~ 447 (536)
+++++|+++++...++.|++|++...+
T Consensus 240 ~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 240 AVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred EECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 999999988888899999999986544
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=1.2e-11 Score=122.89 Aligned_cols=272 Identities=10% Similarity=0.009 Sum_probs=177.6
Q ss_pred CccEEEEEeC--CC---cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE----------CCCeEEEEE
Q 009380 247 DVRMVVAGSK--LG---NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC----------YDGLIRLMD 311 (536)
Q Consensus 247 ~~~~l~tg~~--dg---~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s----------~dg~I~vwd 311 (536)
++.++++... .. .|.+||..+ ...+..+.....+ .++++|++ ++++.+. .++.|.+||
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t----~~~~~~i~~g~~p--~i~~spDg-~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGS----GSILGHVNGGFLP--NPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCC----CeEEEEecCCCCC--CeEECCCC-CEEEEEeccccccccCCCCCeEEEEE
Confidence 6666666543 22 789999987 5566666654444 99999999 8888775 367899999
Q ss_pred CCCCeEEEeecC--------CCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCcccee-EeccCCCeEEEEEecCCC
Q 009380 312 AEKEVFDLVYSS--------EYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATE-WLLHEARINTIDFNPRNP 380 (536)
Q Consensus 312 ~~~~~~~~~~~~--------~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~-~~~h~~~i~~i~~~p~~~ 380 (536)
..+.+....... ......+.|+|++ ++|+++.. ++.|.++| .+++.+.. +.. .. ++.+.|++.
T Consensus 104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG-~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~ 177 (373)
T 2mad_H 104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAP 177 (373)
T ss_pred CCCCcEEEEEECCCccccccCCCccceEECCCC-CEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCC
Confidence 988665443322 1235689999999 77887764 57899999 99988766 542 22 356677777
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCcc-eeecccCc-eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc--eEEeccC
Q 009380 381 NIMATSSTDGTACIWDLRSMATDKPEPM-KVLSHKRA-VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--SMIHHNN 456 (536)
Q Consensus 381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~-~~~~~~~~-v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~--~~~~~~~ 456 (536)
..+++.+.||.+.++|. +++....... .......+ .....+.+++..++..+..+.+.+.|+...... ..+....
T Consensus 178 ~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~ 256 (373)
T 2mad_H 178 STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALS 256 (373)
T ss_pred ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecC
Confidence 77888888999999999 6531100000 00011112 233566776655555557889999998654321 1121100
Q ss_pred C----CC-ceeeeeEEEEcCCCCEEEEEcC----------CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCC-E
Q 009380 457 Q----TG-RWISSFRAIWGWDDSCVFIGNM----------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-T 520 (536)
Q Consensus 457 ~----~~-~~~~~~~~~~s~~g~~l~~gs~----------dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~-~ 520 (536)
. .+ .......+.++++++.+++... .+.|.++|..+++.+.++.... .+..+.++| |+. .
T Consensus 257 ~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~---~p~~i~~s~-Dg~~~ 332 (373)
T 2mad_H 257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH---DVDAISVAQ-DGGPD 332 (373)
T ss_pred CcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC---CcCeEEECC-CCCeE
Confidence 0 00 0000111457899888887653 3579999999999988886543 235678888 567 7
Q ss_pred EEEEc-cCCeEEEEecC
Q 009380 521 LAGAT-GGGQVYVWTSD 536 (536)
Q Consensus 521 lasgs-~Dg~v~iW~~d 536 (536)
|++++ .++.|.|||++
T Consensus 333 l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 333 LYALSAGTEVLHIYDAG 349 (373)
T ss_pred EEEEcCCCCeEEEEECC
Confidence 77777 58999999974
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.56 E-value=1.7e-12 Score=123.58 Aligned_cols=211 Identities=9% Similarity=0.041 Sum_probs=156.1
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEeecCC--CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc-CCCeEE
Q 009380 296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSE--YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH-EARINT 372 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~--~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h-~~~i~~ 372 (536)
++|++++.|+.|.+||.++++....+... ..+.++.+.|++ ++++ +.++.|..||. +++.+..+..+ ...+.+
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 78999999999999999999887776654 368999999998 7777 45778999999 89988888864 357889
Q ss_pred EEEecCCCCEEEEEeC-CCcEEEEeCCCCCCCCCCcceee------cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380 373 IDFNPRNPNIMATSST-DGTACIWDLRSMATDKPEPMKVL------SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 373 i~~~p~~~~~l~s~s~-dg~i~iwdl~~~~~~~~~~~~~~------~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~ 445 (536)
+.+.++| +++++.+. ++.|..+|. +++ .+..+. .+......+.+.++|+++++...++.|.+||..
T Consensus 82 ~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk----~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 82 ARILPDG-NALVAWCGHPSTILEVNM-KGE----VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEECTTS-CEEEEEESTTEEEEEECT-TSC----EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cEECCCC-CEEEEecCCCCEEEEEeC-CCC----EEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 9999988 67777776 777777775 332 111111 122345667889999999999999999999987
Q ss_pred CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCce----eeeeeeEeecCCCCCEE
Q 009380 446 FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYI----SAIPCRFHAHPHQVGTL 521 (536)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~----~~~~~~~~~~p~~~~~l 521 (536)
++.+..+..... .+.+...++|.++++++.++.|..+|..+++.+.++..... ...+..+...+ ++.++
T Consensus 155 G~~~w~~~~~~~------~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 155 GQLLNSVKLSGT------PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp SCEEEEEECSSC------CCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT-TSCEE
T ss_pred CCEEEEEECCCC------ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC-CCCEE
Confidence 888887765321 11245678999999998888999999999999888863211 11223444455 45666
Q ss_pred EEE
Q 009380 522 AGA 524 (536)
Q Consensus 522 asg 524 (536)
++.
T Consensus 228 v~~ 230 (276)
T 3no2_A 228 ICN 230 (276)
T ss_dssp EEE
T ss_pred EEe
Confidence 665
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.53 E-value=5.7e-11 Score=113.90 Aligned_cols=277 Identities=9% Similarity=-0.030 Sum_probs=181.1
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
...+.++++.+ ++.++++...++.|.+|+.. . ......+..+...+.++++.+++ .++++...++.|..||..
T Consensus 19 ~~~p~~i~~d~--~g~l~v~~~~~~~v~~~~~~-~---~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 19 DSGPYGITSSE--DGKVWFTQHKANKISSLDQS-G---RIKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK 91 (300)
T ss_dssp TCCEEEEEECT--TSCEEEEETTTTEEEEECTT-S---CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT
T ss_pred CCCcceeeECC--CCCEEEEcCCCCeEEEECCC-C---ceEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEECCC
Confidence 35788999999 89888887778999999977 2 12222233344678999999988 777766668899999988
Q ss_pred CCeEEEeec--CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee-EeccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380 314 KEVFDLVYS--SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE-WLLHEARINTIDFNPRNPNIMATSSTDG 390 (536)
Q Consensus 314 ~~~~~~~~~--~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~h~~~i~~i~~~p~~~~~l~s~s~dg 390 (536)
+....... ....+.++++.+++ +++++...++.|..||.. ++.... +......+.++++.+++ +++++...++
T Consensus 92 -g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~ 167 (300)
T 2qc5_A 92 -GGFTEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN-ALWFTENQNN 167 (300)
T ss_dssp -SCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTT
T ss_pred -CCeEEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC-CEEEEecCCC
Confidence 55443321 34678999999887 666665557899999987 544321 22245678999999987 5666666678
Q ss_pred cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEc
Q 009380 391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG 470 (536)
Q Consensus 391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s 470 (536)
.|..||. +++ ........+...+..++++++|.++++....+.|.+||. ++.... +..... .. ....++++
T Consensus 168 ~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~-~~--~~~~i~~d 238 (300)
T 2qc5_A 168 SIGRITN-TGK---LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-YDIPTP-NA--RPHAITAG 238 (300)
T ss_dssp EEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSST-TC--CEEEEEEC
T ss_pred eEEEECC-CCc---EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE-EECCCC-CC--CceEEEEC
Confidence 8999998 432 111111134457889999999987776666778999998 443222 211111 11 22336788
Q ss_pred CCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 471 ~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
++|.++++...++.|..|+.. ++.. .+........+..+...+ ++.++++.. . .|..++.
T Consensus 239 ~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~~~-~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 239 KNSEIWFTEWGANQIGRITND-NTIQ-EYQLQTENAEPHGITFGK-DGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp STTCEEEEETTTTEEEEECTT-SCEE-EEECCSTTCCCCCEEECT-TSCEEEECS-S-EEEEEEE
T ss_pred CCCCEEEeccCCCeEEEECCC-CcEE-EEECCccCCccceeEeCC-CCCEEEEcc-C-ceEEeCC
Confidence 999877766667899999984 4322 222111111234566776 456555544 4 7776664
No 199
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.52 E-value=2.4e-11 Score=120.75 Aligned_cols=264 Identities=11% Similarity=0.004 Sum_probs=174.5
Q ss_pred eEEecccccCccccccccCCceEEEEEEecCCccEEEEEe----------CCCcEEEEECCCCCCCCCceEEeccC----
Q 009380 216 CVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGS----------KLGNITFWNLDSQQDEDNGIYLFRTH---- 281 (536)
Q Consensus 216 ~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~~~h---- 281 (536)
.|.++|..... .+.....+....++++| |+++|+++. .++.|.+||..+ ...+..+...
T Consensus 48 ~v~v~D~~t~~-~~~~i~~g~~p~i~~sp--Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t----~~~~~~i~~~~~~~ 120 (373)
T 2mad_H 48 QQWVLDAGSGS-ILGHVNGGFLPNPVAAH--SGSEFALASTSFSRIAKGKRTDYVEVFDPVT----FLPIADIELPDAPR 120 (373)
T ss_pred EEEEEECCCCe-EEEEecCCCCCCeEECC--CCCEEEEEeccccccccCCCCCeEEEEECCC----CcEEEEEECCCccc
Confidence 67778764322 22222233333999999 999988876 367899999986 4444443221
Q ss_pred ---CCCEEEEEEecCCCCEEEEEEC--CCeEEEEECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC
Q 009380 282 ---LGPISGIVTQQYCLSKIFTSCY--DGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR 355 (536)
Q Consensus 282 ---~~~V~~l~~~~~~~~~l~s~s~--dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~ 355 (536)
...-..+.|+|++ ++|+.+.. ++.|.++| .+++.... ...... +.+.|.+...+++.+.||.+.++|.
T Consensus 121 ~~~g~~p~~~~~spDG-~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~- 194 (373)
T 2mad_H 121 FDVGPYSWMNANTPNN-ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH- 194 (373)
T ss_pred cccCCCccceEECCCC-CEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-
Confidence 1234578999999 88888774 58899999 98877655 544332 4556777677788889999999999
Q ss_pred CCccceeEe-----ccCCC-eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--------cccCceeEEE
Q 009380 356 SRKSATEWL-----LHEAR-INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--------SHKRAVHSAY 421 (536)
Q Consensus 356 ~~~~~~~~~-----~h~~~-i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--------~~~~~v~~l~ 421 (536)
+++.+.... ....+ .....+.+++..++++. ..+.+.+.|+.............. -.......+.
T Consensus 195 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~ 273 (373)
T 2mad_H 195 AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA 273 (373)
T ss_pred CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEE
Confidence 877653321 11122 12345666664444444 678999999875421100001000 0123345588
Q ss_pred EccCCCeEEEEeC----------CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC-EEEEEc-CCCcEEEEc
Q 009380 422 FSPSGSSLATTSF----------DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS-CVFIGN-MTRTVEVIS 489 (536)
Q Consensus 422 ~sp~g~~l~t~s~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs-~dg~I~v~d 489 (536)
++|+++.++++.. .+.|.++|..+++.+..+.... ....+.|+|||+ .+++++ .++.|.|||
T Consensus 274 ~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~------~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 274 YLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH------DVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred ECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC------CcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 9999988877653 3579999999998888774322 122377999999 788877 489999999
Q ss_pred CCccccceec
Q 009380 490 PAQRRSVATL 499 (536)
Q Consensus 490 ~~~~~~~~~l 499 (536)
..+++.+.++
T Consensus 348 ~~t~~vv~~i 357 (373)
T 2mad_H 348 AGAGDQDQST 357 (373)
T ss_pred CCCCCEEeee
Confidence 9999888773
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.51 E-value=1.4e-11 Score=119.16 Aligned_cols=242 Identities=12% Similarity=0.066 Sum_probs=159.6
Q ss_pred ccCCCCEEEEEEecCCCCEEEE-------EECCCeEEEEECCCCeEEEeec-----CCCceeEEEecCC-CCCEEEEEEC
Q 009380 279 RTHLGPISGIVTQQYCLSKIFT-------SCYDGLIRLMDAEKEVFDLVYS-----SEYAVFSLSQQPN-NVNTLYFGEG 345 (536)
Q Consensus 279 ~~h~~~V~~l~~~~~~~~~l~s-------~s~dg~I~vwd~~~~~~~~~~~-----~~~~i~~l~~~~~-~~~~l~~g~~ 345 (536)
...-....+++|.+++ .++++ ...++.|.+||..++....+.. +...+.++++.++ + .+++++.
T Consensus 14 ~~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g--~l~v~~~ 90 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN--QLFVADM 90 (314)
T ss_dssp ECCCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS--EEEEEET
T ss_pred hccCCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC--cEEEEEC
Confidence 3334456899999887 77777 5778999999988877654433 3467899999998 5 4555555
Q ss_pred CCeEEEEECCCCcccee-Eec----cCCCeEEEEEecCCCCEEEEEeCC---------------CcEEEEeCCCCCCCCC
Q 009380 346 QGGLNIWDVRSRKSATE-WLL----HEARINTIDFNPRNPNIMATSSTD---------------GTACIWDLRSMATDKP 405 (536)
Q Consensus 346 dg~i~i~d~~~~~~~~~-~~~----h~~~i~~i~~~p~~~~~l~s~s~d---------------g~i~iwdl~~~~~~~~ 405 (536)
.+.|.+||.. ++.... ... ....+.++++.+++ +++++...+ +.|..||.. +
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g----- 162 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G----- 162 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-----
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-C-----
Confidence 5589999988 654322 211 12358899999987 566666544 467777754 2
Q ss_pred CcceeecccCceeEEEEc----cCCCeEEEE-eCCCcEEEEeCC-CCCcc--eEEeccCCCC-ceeeeeEEEEcCCCCEE
Q 009380 406 EPMKVLSHKRAVHSAYFS----PSGSSLATT-SFDDTIGIWSGV-NFENT--SMIHHNNQTG-RWISSFRAIWGWDDSCV 476 (536)
Q Consensus 406 ~~~~~~~~~~~v~~l~~s----p~g~~l~t~-s~dg~I~iwd~~-~~~~~--~~~~~~~~~~-~~~~~~~~~~s~~g~~l 476 (536)
.......+......++|+ |+++.|+++ ..++.|.+||.. ++... ..+....... .. ...++++++|.++
T Consensus 163 ~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~--p~~i~~d~~G~l~ 240 (314)
T 1pjx_A 163 QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG--ADGMDFDEDNNLL 240 (314)
T ss_dssp CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE--EEEEEEBTTCCEE
T ss_pred CEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC--CCceEECCCCCEE
Confidence 223333444567889999 999765555 567899999976 33211 1111111110 11 2236789999888
Q ss_pred EEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCC-EEEEEccCCeEEEEecC
Q 009380 477 FIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVYVWTSD 536 (536)
Q Consensus 477 ~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~-~lasgs~Dg~v~iW~~d 536 (536)
++...++.|.+||..+++.+..+..+... +..++++| ++. ++++...++.|..|+++
T Consensus 241 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~--~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 241 VANWGSSHIEVFGPDGGQPKMRIRCPFEK--PSNLHFKP-QTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEETTTEEEEECTTCBSCSEEEECSSSC--EEEEEECT-TSSEEEEEETTTTEEEEEECS
T ss_pred EEEcCCCEEEEEcCCCCcEeEEEeCCCCC--ceeEEECC-CCCEEEEEeCCCCeEEEEeCC
Confidence 88777889999999877776666544322 24567777 557 55566677899999864
No 201
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.51 E-value=9.3e-12 Score=125.50 Aligned_cols=240 Identities=4% Similarity=-0.016 Sum_probs=163.7
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC--eEEEEEC
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG--LIRLMDA 312 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg--~I~vwd~ 312 (536)
.....|+|+| ++.++++...++.|++||..+ ......... ..... ++|++++ +.|+++..++ .|.+|+.
T Consensus 131 ~~P~~la~d~--~g~lyv~d~~~~~I~~id~~~----g~~~~~~~~-~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~ 201 (409)
T 3hrp_A 131 KYMWGIAAVG--NNTVLAYQRDDPRVRLISVDD----NKVTTVHPG-FKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMK 201 (409)
T ss_dssp CCEEEEEECS--TTEEEEEETTTTEEEEEETTT----TEEEEEEET-CCBCB-CEECTTS-SEEEEEBSSTTCEEEEEEG
T ss_pred CCceEEEEeC--CCCEEEEecCCCcEEEEECCC----CEEEEeecc-CCCCc-eeEecCC-CcEEEEecCCCceEEEEEc
Confidence 4678999999 899888888889999999985 333333333 23333 9999998 8888888866 7999998
Q ss_pred CCCeEEEee----c-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee----EeccCCCe--EEEEEecCCCC
Q 009380 313 EKEVFDLVY----S-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE----WLLHEARI--NTIDFNPRNPN 381 (536)
Q Consensus 313 ~~~~~~~~~----~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~----~~~h~~~i--~~i~~~p~~~~ 381 (536)
..+...... . ....+.+++++|++ ..|+++..++.|+.||..++..... ..++...- ..++|+|++..
T Consensus 202 ~~~~~~~~~g~~~~~~~~~p~~iav~p~~-g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 202 ASGWAPTRIGQLGSTFSGKIGAVALDETE-EWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN 280 (409)
T ss_dssp GGTTCEEEEEECCTTSCSCCCBCEECTTS-SEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred CCCceeEEeeeccchhcCCcEEEEEeCCC-CeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence 765432222 2 44677899999955 3566677788999999987653221 11222222 39999996557
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc---------------CceeEEEEccCCCeEEEEe-CCCcEEEEeCCC
Q 009380 382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHK---------------RAVHSAYFSPSGSSLATTS-FDDTIGIWSGVN 445 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~---------------~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~ 445 (536)
++++-..++.|+.||... ....+.++. .....++++|+|+++++-+ .++.|+.||+.+
T Consensus 281 lyv~d~~~~~I~~~~~~g------~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITPDG------ECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp EEEEETTTTEEEEECTTC------CEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred EEEEeCCCCEEEEEecCC------CEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence 777777789999999764 122222221 3478999999999777777 789999999877
Q ss_pred CCcceEEeccCCCC---------ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380 446 FENTSMIHHNNQTG---------RWISSFRAIWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 446 ~~~~~~~~~~~~~~---------~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
+.......+....+ .......++++++|.++++-..++.|+.+++
T Consensus 355 G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 355 GYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 65443333311100 1112334678888877777777888887764
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=9.3e-12 Score=120.51 Aligned_cols=240 Identities=9% Similarity=0.043 Sum_probs=160.4
Q ss_pred ceEEEEEEecCCccEEEE-------EeCCCcEEEEECCCCCCCCCceEEec-----cCCCCEEEEEEecCCCCEEEEEEC
Q 009380 236 RITQMKFLPCSDVRMVVA-------GSKLGNITFWNLDSQQDEDNGIYLFR-----THLGPISGIVTQQYCLSKIFTSCY 303 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~t-------g~~dg~v~iwd~~~~~~~~~~~~~~~-----~h~~~V~~l~~~~~~~~~l~s~s~ 303 (536)
...+++|++ ++.++++ +..++.|.+|+..+ +.. ..+. ++...+.++++++++ ..|+.++.
T Consensus 19 ~~~~~~~~~--~g~l~~~~~~~~~~~~~~~~i~~~d~~~----g~~-~~~~~~~~~~~~~~~~~i~~~~~~-g~l~v~~~ 90 (314)
T 1pjx_A 19 GAEGPVFDK--NGDFYIVAPEVEVNGKPAGEILRIDLKT----GKK-TVICKPEVNGYGGIPAGCQCDRDA-NQLFVADM 90 (314)
T ss_dssp TCEEEEECT--TSCEEEEETTCEETTEECCEEEEECTTT----CCE-EEEECCEETTEECCEEEEEECSSS-SEEEEEET
T ss_pred CccCceECC--CCCEEEEEeccccCCCCCCEEEEEeCCC----CcE-EEEEecccCCCCCCCceEEEecCC-CcEEEEEC
Confidence 467899998 8888888 57788999999875 222 2222 255678999999983 24455555
Q ss_pred CCeEEEEECCCCeEEEe-ecC-----CCceeEEEecCCCCCEEEEEECC---------------CeEEEEECCCCcccee
Q 009380 304 DGLIRLMDAEKEVFDLV-YSS-----EYAVFSLSQQPNNVNTLYFGEGQ---------------GGLNIWDVRSRKSATE 362 (536)
Q Consensus 304 dg~I~vwd~~~~~~~~~-~~~-----~~~i~~l~~~~~~~~~l~~g~~d---------------g~i~i~d~~~~~~~~~ 362 (536)
.+.|.+||.. +....+ ... ...+.++++.+++ +++++...+ +.|..||.. ++.. .
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~ 166 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-Q 166 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-E
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-E
Confidence 5579999998 766544 321 2358899999988 666655544 578888765 4433 3
Q ss_pred EeccCCCeEEEEEe----cCCCCEEEEEeCCCcEEEEeCC-CCCCCCCCcc-eeeccc-CceeEEEEccCCCeEEEEeCC
Q 009380 363 WLLHEARINTIDFN----PRNPNIMATSSTDGTACIWDLR-SMATDKPEPM-KVLSHK-RAVHSAYFSPSGSSLATTSFD 435 (536)
Q Consensus 363 ~~~h~~~i~~i~~~----p~~~~~l~s~s~dg~i~iwdl~-~~~~~~~~~~-~~~~~~-~~v~~l~~sp~g~~l~t~s~d 435 (536)
+..+......++|+ |++..++++...++.|.+||+. .+........ ....+. ..+..++++++|+++++...+
T Consensus 167 ~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 167 VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence 33344567899999 9874455555667899999976 2210000011 111232 567889999999988887788
Q ss_pred CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE-cCCCcEEEEcCCc
Q 009380 436 DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG-NMTRTVEVISPAQ 492 (536)
Q Consensus 436 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g-s~dg~I~v~d~~~ 492 (536)
+.|.+||..+++....+.... ..+ ..++|+++++.|+++ ..++.|..|++..
T Consensus 247 ~~i~~~d~~~g~~~~~~~~~~---~~~--~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKMRIRCPF---EKP--SNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TEEEEECTTCBSCSEEEECSS---SCE--EEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CEEEEEcCCCCcEeEEEeCCC---CCc--eeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 899999988676665554221 222 336689999955554 5567899998764
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=5.1e-12 Score=137.80 Aligned_cols=274 Identities=9% Similarity=-0.019 Sum_probs=162.4
Q ss_pred CccEEEEEeCCCc---EEEEECCCC---CCCCCceE----EeccCCCCEEEEEEecCCCCEEEEEECC-----CeEEEEE
Q 009380 247 DVRMVVAGSKLGN---ITFWNLDSQ---QDEDNGIY----LFRTHLGPISGIVTQQYCLSKIFTSCYD-----GLIRLMD 311 (536)
Q Consensus 247 ~~~~l~tg~~dg~---v~iwd~~~~---~~~~~~~~----~~~~h~~~V~~l~~~~~~~~~l~s~s~d-----g~I~vwd 311 (536)
+|.+++....++. -.+|..... ......+. .-.+|...+..+.|+||| ++|+.++.+ ..|++||
T Consensus 117 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG-~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 117 RGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDG-RLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp ETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTS-SEEEEEEEETTCSEEEEEEEE
T ss_pred ECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCC-CEEEEEEcCCCCceEEEEEEE
Confidence 7877776654433 555654321 11011111 112343468899999999 777766543 3699999
Q ss_pred CCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC--------------eEEEEECCCCccc--eeEe--ccCCCeEEE
Q 009380 312 AEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG--------------GLNIWDVRSRKSA--TEWL--LHEARINTI 373 (536)
Q Consensus 312 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg--------------~i~i~d~~~~~~~--~~~~--~h~~~i~~i 373 (536)
+.++...........+..++|+|+ +.|+.+..++ .|++|++.++... ..+. .+...+.++
T Consensus 196 l~tg~~~~~~~~~~~~~~~~wspD--~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 196 VADGKPLADELKWVKFSGLAWLGN--DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp TTTCCEEEEEEEEEESCCCEESTT--SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred CCCCCCCCccCCCceeccEEEECC--CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 999876544322223468899998 4566555544 3899999877632 2222 233458899
Q ss_pred EEecCCCCEEEEEeCC-----CcEEEEeCCCCCCCCCC-cceeecccCceeEEEEccCCCeEEEEeCC----CcEEEEeC
Q 009380 374 DFNPRNPNIMATSSTD-----GTACIWDLRSMATDKPE-PMKVLSHKRAVHSAYFSPSGSSLATTSFD----DTIGIWSG 443 (536)
Q Consensus 374 ~~~p~~~~~l~s~s~d-----g~i~iwdl~~~~~~~~~-~~~~~~~~~~v~~l~~sp~g~~l~t~s~d----g~I~iwd~ 443 (536)
.|+|+|. +|+..+.+ ..|++||+.++. .. ...+..+...+.... +|+|..|+..+.+ +.|.+||+
T Consensus 274 ~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~---~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~ 348 (741)
T 1yr2_A 274 SVSSDGR-WVVITSSEGTDPVNTVHVARVTNGK---IGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDL 348 (741)
T ss_dssp EECTTSC-EEEEEEECTTCSCCEEEEEEEETTE---ECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEEC
T ss_pred EECCCCC-EEEEEEEccCCCcceEEEEECCCCC---CcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeC
Confidence 9999984 55555543 379999987641 02 334444554555543 4889888887754 45999998
Q ss_pred CCCC-cceE-EeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC-ccccceeccCCceeeeeeeEeecCCCCCE
Q 009380 444 VNFE-NTSM-IHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA-QRRSVATLQSPYISAIPCRFHAHPHQVGT 520 (536)
Q Consensus 444 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~-~~~~~~~l~~~~~~~~~~~~~~~p~~~~~ 520 (536)
.++. .... +.+.. ..+.. +.|+ ++.++++...++..+||.+. .+..+..+..+....+ ..++++| ++..
T Consensus 349 ~~~~~~~~~l~~~~~---~~l~~--~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v-~~~~~s~-d~~~ 420 (741)
T 1yr2_A 349 SGSTPRFDTVVPESK---DNLES--VGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSA-SGLSGRP-GDRH 420 (741)
T ss_dssp SSSSCEEEEEECCCS---SEEEE--EEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEE-EEEECCB-TCSC
T ss_pred CCCccccEEEecCCC---CeEEE--EEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEE-EEeecCC-CCCE
Confidence 7752 2222 22211 12222 4455 55677888888876666543 3445555654322222 4567777 4454
Q ss_pred EE-E---EccCCeEEEEecC
Q 009380 521 LA-G---ATGGGQVYVWTSD 536 (536)
Q Consensus 521 la-s---gs~Dg~v~iW~~d 536 (536)
|+ + ....+.|++||++
T Consensus 421 l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 421 AYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp EEEEEEETTEEEEEEEEETT
T ss_pred EEEEEcCCCCCCEEEEEECC
Confidence 54 3 3355889999863
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.47 E-value=2e-11 Score=120.10 Aligned_cols=273 Identities=12% Similarity=0.113 Sum_probs=180.9
Q ss_pred EEEecCCccEEEEEeC-----CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE----------CCC
Q 009380 241 KFLPCSDVRMVVAGSK-----LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC----------YDG 305 (536)
Q Consensus 241 ~~~p~~~~~~l~tg~~-----dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s----------~dg 305 (536)
...| ++..+++... ++.|.+.|..+ ...+..+..-..+ . +.++|++ ++++.+. .++
T Consensus 39 ~~~p--d~~~vyV~~~~~~~~~~~V~ViD~~t----~~v~~~I~vG~~P-~-va~spDG-~~lyVan~~~~r~~~G~~~~ 109 (386)
T 3sjl_D 39 APAP--DARRVYVNDPAHFAAVTQQFVIDGEA----GRVIGMIDGGFLP-N-PVVADDG-SFIAHASTVFSRIARGERTD 109 (386)
T ss_dssp CCCC--CTTEEEEEECGGGCSSEEEEEEETTT----TEEEEEEEECSSC-E-EEECTTS-SCEEEEEEEEEETTEEEEEE
T ss_pred ccCC--CCCEEEEEcCcccCCCCEEEEEECCC----CeEEEEEECCCCC-c-EEECCCC-CEEEEEcccccccccCCCCC
Confidence 3346 7777777655 57999999987 6777777655555 4 9999999 7776665 367
Q ss_pred eEEEEECCCCeEEEeecC--------CCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCccceeEeccCCCeEEEEE
Q 009380 306 LIRLMDAEKEVFDLVYSS--------EYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATEWLLHEARINTIDF 375 (536)
Q Consensus 306 ~I~vwd~~~~~~~~~~~~--------~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~ 375 (536)
.|.+||..+.+....... ......+.|+|++ ++++++.. ++.|.++|+.+++.+.++.... |..+
T Consensus 110 ~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG-k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~ 184 (386)
T 3sjl_D 110 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHI 184 (386)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEE
T ss_pred EEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC-CEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----ccee
Confidence 899999999876554422 2356789999999 77887764 6899999999999988886322 1233
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCC-CCCCCCCcceee-cccCce-eEEEEc-cCCCeEEEEeCCCcEEEEeCCCCCc--c
Q 009380 376 NPRNPNIMATSSTDGTACIWDLRS-MATDKPEPMKVL-SHKRAV-HSAYFS-PSGSSLATTSFDDTIGIWSGVNFEN--T 449 (536)
Q Consensus 376 ~p~~~~~l~s~s~dg~i~iwdl~~-~~~~~~~~~~~~-~~~~~v-~~l~~s-p~g~~l~t~s~dg~I~iwd~~~~~~--~ 449 (536)
.|.+.+.+++.+.||.+.+.++.. ++... ...... .-..++ ....|. ++|++++ .+.+|.|.++|+.+... .
T Consensus 185 ~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~ 262 (386)
T 3sjl_D 185 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFL 262 (386)
T ss_dssp EEEETTEEEEEETTSCEEEEECCSSSCCEE-EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEEC
T ss_pred ecCCCceeEEECCCCCEEEEECCCCCeEEE-eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceee
Confidence 465667788888899999999976 32100 000000 011222 234664 5776544 56689999999875542 2
Q ss_pred eEEecc---------CCCCceeeeeEEEEcCCCCEEEEEcC----------CCcEEEEcCCccccceeccCCceeeeeee
Q 009380 450 SMIHHN---------NQTGRWISSFRAIWGWDDSCVFIGNM----------TRTVEVISPAQRRSVATLQSPYISAIPCR 510 (536)
Q Consensus 450 ~~~~~~---------~~~~~~~~~~~~~~s~~g~~l~~gs~----------dg~I~v~d~~~~~~~~~l~~~~~~~~~~~ 510 (536)
..+... .+.+. . .+.++++++.+++... .+.|.++|..+++.+..+...+ -...
T Consensus 263 ~~~~~~~~~~~~~g~~p~g~--q--~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~---~~~~ 335 (386)
T 3sjl_D 263 PAVEALTEAERADGWRPGGW--Q--QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH---EIDS 335 (386)
T ss_dssp CCEESSCHHHHHTTEEECSS--S--CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---EECE
T ss_pred cceeccccccccccccCCCc--c--eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC---Ccce
Confidence 222100 01110 1 1446888888887643 2579999999999999887543 2246
Q ss_pred EeecCCCCCEEEE-EccCCeEEEEecC
Q 009380 511 FHAHPHQVGTLAG-ATGGGQVYVWTSD 536 (536)
Q Consensus 511 ~~~~p~~~~~las-gs~Dg~v~iW~~d 536 (536)
+.++|....+|++ ...++.|.|+|..
T Consensus 336 lavs~D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 336 INVSQDEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp EEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 7778843235655 4568999999863
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.47 E-value=1.5e-11 Score=123.19 Aligned_cols=274 Identities=11% Similarity=0.050 Sum_probs=181.9
Q ss_pred CccEEEEEeC-C----CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE----------CCCeEEEEE
Q 009380 247 DVRMVVAGSK-L----GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC----------YDGLIRLMD 311 (536)
Q Consensus 247 ~~~~l~tg~~-d----g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s----------~dg~I~vwd 311 (536)
++..+++... + +.|.++|+.+ .+.+..+..-..+ .+.++|++ ++|+.+. .++.|.++|
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t----~~vv~~I~vG~~P--gia~SpDg-k~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGST----GRILGMTDGGFLP--HPVAAEDG-SFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTT----TEEEEEEEECSSC--EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCC----CEEEEEEECCCCC--ceEECCCC-CEEEEEeccccccccCCCCCEEEEEE
Confidence 4454444433 2 6999999998 6777777655556 89999999 7776665 467899999
Q ss_pred CCCCeEEEeecC--------CCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCC
Q 009380 312 AEKEVFDLVYSS--------EYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPN 381 (536)
Q Consensus 312 ~~~~~~~~~~~~--------~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~ 381 (536)
..+.+....... ......+.|+|++ ++++++.. ++.|.++|+.+++.+.++.... +....|++..
T Consensus 156 ~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDG-k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~ 230 (426)
T 3c75_H 156 PVTFLPIADIELPDAPRFLVGTYQWMNALTPDN-KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPT 230 (426)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETT
T ss_pred CCCCcEEEEEECCCccccccCCCcceEEEcCCC-CEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCc
Confidence 999876544322 2346688999999 78888764 5789999999999888876322 1345565657
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCc-eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc--eEEeccC--
Q 009380 382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRA-VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--SMIHHNN-- 456 (536)
Q Consensus 382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~-v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~--~~~~~~~-- 456 (536)
.+++.+.||.+.+.++..++........+.....+ ...+.|.+++..++..+..+.|.+.|+...... ..+....
T Consensus 231 ~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~ 310 (426)
T 3c75_H 231 VFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEA 310 (426)
T ss_dssp EEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTT
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccc
Confidence 77788889999988985432100000000001111 224678999888888788899999998654321 1111000
Q ss_pred --CCCce-eeeeEEEEcCCCCEEEEEcC----------CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCC-EEE
Q 009380 457 --QTGRW-ISSFRAIWGWDDSCVFIGNM----------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLA 522 (536)
Q Consensus 457 --~~~~~-~~~~~~~~s~~g~~l~~gs~----------dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~-~la 522 (536)
..+.. .....+.+++++..+++... .+.|.++|..+.+.+.++.... .+..+.++| ++. +|+
T Consensus 311 ~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~---~P~gia~sp-Dg~~~ly 386 (426)
T 3c75_H 311 ERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH---EIDSINVSQ-DAEPLLY 386 (426)
T ss_dssp TGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---EECEEEECC-SSSCEEE
T ss_pred ccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC---CcCeEEEcc-CCCEEEE
Confidence 00000 00001467899888777643 3579999999999999986432 345788888 556 777
Q ss_pred EEc-cCCeEEEEecC
Q 009380 523 GAT-GGGQVYVWTSD 536 (536)
Q Consensus 523 sgs-~Dg~v~iW~~d 536 (536)
++. .++.|.|+|++
T Consensus 387 v~n~~s~~VsVID~~ 401 (426)
T 3c75_H 387 ALSAGTQTLHIYDAA 401 (426)
T ss_dssp EEETTTTEEEEEETT
T ss_pred EEcCCCCeEEEEECC
Confidence 777 59999999974
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.45 E-value=2.7e-10 Score=109.09 Aligned_cols=275 Identities=8% Similarity=-0.064 Sum_probs=179.3
Q ss_pred cccceeeeecCCCCcccccccccccccccccccceEEecccccCccccc--cccCCceEEEEEEecCCccEEEEEeCCCc
Q 009380 182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIA--RIMPGRITQMKFLPCSDVRMVVAGSKLGN 259 (536)
Q Consensus 182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~--~~~~~~I~~v~~~p~~~~~~l~tg~~dg~ 259 (536)
......++.+.++|.+.... ..++.|..|+.. ...... ......+.++++.+ ++.++++...++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~----------~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~ 84 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQ----------HKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS--LGDIWFTENGANK 84 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEE----------TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT--TSCEEEEETTTTE
T ss_pred CCCCcceeeECCCCCEEEEc----------CCCCeEEEECCC-CceEEEECCCCCCcceeEEECC--CCCEEEEecCCCe
Confidence 34567788888888876643 234567777754 221111 11236789999998 8888887777788
Q ss_pred EEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-ec-CCCceeEEEecCCCC
Q 009380 260 ITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-YS-SEYAVFSLSQQPNNV 337 (536)
Q Consensus 260 v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~~-~~~~i~~l~~~~~~~ 337 (536)
|..||... .............+.++++.+++ .++++...++.|..||.. +..... .. ....+.++++.+++
T Consensus 85 v~~~d~~g----~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g- 157 (300)
T 2qc5_A 85 IGKLSKKG----GFTEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN- 157 (300)
T ss_dssp EEEECTTS----CEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-
T ss_pred EEEECCCC----CeEEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC-
Confidence 99998762 22222333344678999999987 777776668899999988 554432 22 34678999999988
Q ss_pred CEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC
Q 009380 338 NTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR 415 (536)
Q Consensus 338 ~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~ 415 (536)
+++++...++.|..||. +++... +. .+...+.++++.+++ +++++....+.|.+||. ++. ........+..
T Consensus 158 ~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~---~~~~~~~~~~~ 230 (300)
T 2qc5_A 158 ALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT-TGE---ISEYDIPTPNA 230 (300)
T ss_dssp SEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCC---EEEEECSSTTC
T ss_pred CEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC-CCc---EEEEECCCCCC
Confidence 65555555789999998 555432 32 344578999999977 67776666778999998 321 11111123456
Q ss_pred ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380 416 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 416 ~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
.+.+++++++|+++++...++.|..||. ++.. ..+....... . ...+.++++|.++++.. + .|..++.
T Consensus 231 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~-~--~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 231 RPHAITAGKNSEIWFTEWGANQIGRITN-DNTI-QEYQLQTENA-E--PHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CEEEEEECSTTCEEEEETTTTEEEEECT-TSCE-EEEECCSTTC-C--CCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CceEEEECCCCCEEEeccCCCeEEEECC-CCcE-EEEECCccCC-c--cceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 7889999999987666666789999998 3322 2222111111 1 22356788887655554 4 6766664
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=3.8e-12 Score=138.83 Aligned_cols=250 Identities=8% Similarity=0.008 Sum_probs=161.5
Q ss_pred ccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCc-
Q 009380 181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGN- 259 (536)
Q Consensus 181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~- 259 (536)
+|...+..+.|||||+.++...+.. +.....|++||+..........+...+..++|+| | +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~-----G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wsp--D-~~l~~~~~~~~~ 231 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDG-----GSDWRTVKFVGVADGKPLADELKWVKFSGLAWLG--N-DALLYSRFAEPK 231 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEET-----TCSEEEEEEEETTTCCEEEEEEEEEESCCCEEST--T-SEEEEEECCCC-
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCC-----CCceEEEEEEECCCCCCCCccCCCceeccEEEEC--C-CEEEEEEecCcc
Confidence 3434678899999999999763211 1111468999986544322112222346899999 8 88888876654
Q ss_pred -------------EEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC-----eEEEEECCCC--e-EE
Q 009380 260 -------------ITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG-----LIRLMDAEKE--V-FD 318 (536)
Q Consensus 260 -------------v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg-----~I~vwd~~~~--~-~~ 318 (536)
|++|++.+.......+.....|...+..+.|+|+| ++|+..+.++ .|.+||+.++ . ..
T Consensus 232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 232 EGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp -------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred cccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 88999876421112333333444468999999999 8887777544 8999999877 5 55
Q ss_pred EeecCCCceeEEEecCCCCCEEEEEEC----CCeEEEEECCCCc-c-ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380 319 LVYSSEYAVFSLSQQPNNVNTLYFGEG----QGGLNIWDVRSRK-S-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTA 392 (536)
Q Consensus 319 ~~~~~~~~i~~l~~~~~~~~~l~~g~~----dg~i~i~d~~~~~-~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i 392 (536)
.+..+...+.... .|++ ..|++.+. ++.|.+||+.++. . ...+..+...+..+.|. +..++++...|+..
T Consensus 311 ~l~~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~ 386 (741)
T 1yr2_A 311 ALIPDLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKS 386 (741)
T ss_dssp EEECSSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEE
T ss_pred EecCCCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEE
Confidence 5655555555543 4777 56666665 3569999998752 3 33333444556778887 33688888889887
Q ss_pred EEEeCCC-CCCCCCCcceee-cccCceeEEEEccCCCeEEEEe----CCCcEEEEeCCCCC
Q 009380 393 CIWDLRS-MATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTS----FDDTIGIWSGVNFE 447 (536)
Q Consensus 393 ~iwdl~~-~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s----~dg~I~iwd~~~~~ 447 (536)
+||.+.. +. ....+. .+...+..+.++|++..|+... ..++|++||+.+++
T Consensus 387 ~l~~~~~~g~----~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 387 QVLAFDLDGK----PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEETTSC----EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEeCCCC----ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7775542 21 222222 2466788999999987665332 34689999998765
No 208
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.42 E-value=1.1e-10 Score=115.27 Aligned_cols=177 Identities=15% Similarity=0.108 Sum_probs=130.1
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCC-------CCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQ-------DEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR 308 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~-------~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~ 308 (536)
+++.+++++ ...++++|+.+ .+.+|++.... ....... ...+.. |..++| ++ .+|+++ .++.|+
T Consensus 39 ~~nlLais~--~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDISN--SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HG-DQVLVS-TRNALY 109 (388)
T ss_dssp CCBCEEEET--TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ET-TEEEEE-ESSEEE
T ss_pred cccEEEEcC--CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CC-CEEEEE-cCCcEE
Confidence 699999999 88999999987 56669875321 0011112 224666 999999 76 888888 889999
Q ss_pred EEECCCCeE-EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380 309 LMDAEKEVF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 309 vwd~~~~~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s 387 (536)
+||+.+... .....+...+.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|+|.| ++.|.
T Consensus 110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG---~~vg~ 179 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ---LAVLL 179 (388)
T ss_dssp EEESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE---EEEEE
T ss_pred EEEchhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc---eEEEE
Confidence 999876432 234456677888877654 38889999999999999877542 45689999999977 67788
Q ss_pred CCCcEEEEeCCCCCCCCCCccee------e---cccCceeEEEEccCCCeEEEEe
Q 009380 388 TDGTACIWDLRSMATDKPEPMKV------L---SHKRAVHSAYFSPSGSSLATTS 433 (536)
Q Consensus 388 ~dg~i~iwdl~~~~~~~~~~~~~------~---~~~~~v~~l~~sp~g~~l~t~s 433 (536)
.||.+++|+........ ...+ . +|...|.+|.|.+++.++++-.
T Consensus 180 ~dg~i~~~~~~~~~~~~--k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEK--QFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp TTSCEEEEEEETTEEEE--EEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cCCcEEEEcCCCccccc--cceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 89999999887642100 1111 1 3788999999999998887743
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.41 E-value=1.4e-10 Score=116.91 Aligned_cols=244 Identities=7% Similarity=-0.008 Sum_probs=163.2
Q ss_pred CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC--eEEEEECCCCccc
Q 009380 283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG--GLNIWDVRSRKSA 360 (536)
Q Consensus 283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg--~i~i~d~~~~~~~ 360 (536)
.....|+|++++ .++++...++.|++||..++....+........ ++|++++ +.|+++..++ .|.+||...+...
T Consensus 131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTT-EEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCC-CEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCcee
Confidence 457899999998 766776677999999999887776655544444 9999998 7888887765 8999998766544
Q ss_pred eeE----eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcce---eecccCce--eEEEEccC-CCeEE
Q 009380 361 TEW----LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMK---VLSHKRAV--HSAYFSPS-GSSLA 430 (536)
Q Consensus 361 ~~~----~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~---~~~~~~~v--~~l~~sp~-g~~l~ 430 (536)
..+ ......+.+++++|++.. |+.+..++.|+.||..+.. ..... ..++...- ..++|+|+ +.+++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~---~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQE---VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCC---EEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCC---EEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 344 224566789999995534 4447778899999988642 01110 11222222 39999995 66666
Q ss_pred EEeCCCcEEEEeCCCCCcceEEeccCCCC---------ceeeeeEEEEcCCCCEEEEEc-CCCcEEEEcCCccccceecc
Q 009380 431 TTSFDDTIGIWSGVNFENTSMIHHNNQTG---------RWISSFRAIWGWDDSCVFIGN-MTRTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 431 t~s~dg~I~iwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~s~~g~~l~~gs-~dg~I~v~d~~~~~~~~~l~ 500 (536)
+-..++.|+.|+.... ...........+ .......++++++|.++++-+ .++.|+.|+..++.. .++.
T Consensus 284 ~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~ 361 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVA 361 (409)
T ss_dssp EETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEE
T ss_pred EeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEe
Confidence 6667889999997543 222222210000 011233477899999888877 889999999777643 3333
Q ss_pred CCc-------------eeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 501 SPY-------------ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 501 ~~~-------------~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
++. .-..+..+++.|. +.++++-..+++|+.+++|
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEEC
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEeC
Confidence 220 0123457888884 6888888889999998875
No 210
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.40 E-value=3.7e-11 Score=118.18 Aligned_cols=269 Identities=8% Similarity=-0.023 Sum_probs=175.8
Q ss_pred cceEEecccccCccccccccCCceEEEEEEecCCccEEEEEe----------CCCcEEEEECCCCCCCCCceEEeccC--
Q 009380 214 GSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGS----------KLGNITFWNLDSQQDEDNGIYLFRTH-- 281 (536)
Q Consensus 214 dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~~~h-- 281 (536)
++.|.+.|...... +.....+.--.++++| ||++|++++ .++.|.+||..+ ...+..+.-.
T Consensus 58 ~~~V~ViD~~t~~v-~~~I~vG~~P~va~sp--DG~~lyVan~~~~r~~~G~~~~~VsviD~~t----~~v~~~I~v~~g 130 (386)
T 3sjl_D 58 VTQQFVIDGEAGRV-IGMIDGGFLPNPVVAD--DGSFIAHASTVFSRIARGERTDYVEVFDPVT----LLPTADIELPDA 130 (386)
T ss_dssp SEEEEEEETTTTEE-EEEEEECSSCEEEECT--TSSCEEEEEEEEEETTEEEEEEEEEEECTTT----CCEEEEEEETTC
T ss_pred CCEEEEEECCCCeE-EEEEECCCCCcEEECC--CCCEEEEEcccccccccCCCCCEEEEEECCC----CeEEEEEECCCc
Confidence 56888888643321 1222211112499999 998887765 357899999998 5556555321
Q ss_pred -----CCCEEEEEEecCCCCEEEEEEC--CCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEEC
Q 009380 282 -----LGPISGIVTQQYCLSKIFTSCY--DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV 354 (536)
Q Consensus 282 -----~~~V~~l~~~~~~~~~l~s~s~--dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~ 354 (536)
...-..+.|+|+| ++++.+.. ++.|.++|+.+++........+. .-..|.+...+++.+.||.+.++++
T Consensus 131 ~r~~~g~~P~~~a~spDG-k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~ 206 (386)
T 3sjl_D 131 PRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAF 206 (386)
T ss_dssp CCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEEC
T ss_pred cccccCCCCceEEEcCCC-CEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEEC
Confidence 1235578999999 88888764 68999999999987766644332 2233555577888899999999999
Q ss_pred CC-CccceeEecc----CCCeE-EEEEe-cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--------cccCceeE
Q 009380 355 RS-RKSATEWLLH----EARIN-TIDFN-PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--------SHKRAVHS 419 (536)
Q Consensus 355 ~~-~~~~~~~~~h----~~~i~-~i~~~-p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--------~~~~~v~~ 419 (536)
.+ ++.......+ ...+. ...|. ++| ++++ .+.+|.|++.|+............+. -.......
T Consensus 207 ~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~ 284 (386)
T 3sjl_D 207 GTEGTPEITHTEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ 284 (386)
T ss_dssp CSSSCCEEEECCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSC
T ss_pred CCCCeEEEeecceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcce
Confidence 76 5543221111 12221 24554 445 4444 55689999999976431111111100 02334556
Q ss_pred EEEccCCCeEEEEeC----------CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC-EEEEEc-CCCcEEE
Q 009380 420 AYFSPSGSSLATTSF----------DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS-CVFIGN-MTRTVEV 487 (536)
Q Consensus 420 l~~sp~g~~l~t~s~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs-~dg~I~v 487 (536)
++++|+++.+++... .+.|.++|+.+++.+..+.... .. ..+.+++|++ +|++.+ .++.|.+
T Consensus 285 ~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~----~~--~~lavs~D~~~~ly~tn~~~~~VsV 358 (386)
T 3sjl_D 285 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH----EI--DSINVSQDEKPLLYALSTGDKTLYI 358 (386)
T ss_dssp EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE----EE--CEEEECSSSSCEEEEEETTTTEEEE
T ss_pred eeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC----Cc--ceEEECCCCCeEEEEEcCCCCeEEE
Confidence 888998888877642 2579999999999888875332 22 2377899997 677755 4789999
Q ss_pred EcCCccccceeccC
Q 009380 488 ISPAQRRSVATLQS 501 (536)
Q Consensus 488 ~d~~~~~~~~~l~~ 501 (536)
+|..+++.+.++..
T Consensus 359 iD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 359 HDAESGEELRSVNQ 372 (386)
T ss_dssp EETTTCCEEEEECC
T ss_pred EECCCCcEEEEecC
Confidence 99999999888764
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.40 E-value=1.7e-10 Score=111.05 Aligned_cols=229 Identities=8% Similarity=0.025 Sum_probs=151.1
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE 315 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~ 315 (536)
-.-+..|+|. ++.++++...++.|..|+..+. . ...+ .+...+.++++++++ ++++ +. ++.|.+||..++
T Consensus 14 ~~Egp~w~~~-~~~l~~~d~~~~~i~~~d~~~~----~-~~~~-~~~~~~~~i~~~~dG-~l~v-~~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 14 CGESPVWEEV-SNSLLFVDIPAKKVCRWDSFTK----Q-VQRV-TMDAPVSSVALRQSG-GYVA-TI-GTKFCALNWKEQ 83 (297)
T ss_dssp BEEEEEEETT-TTEEEEEETTTTEEEEEETTTC----C-EEEE-ECSSCEEEEEEBTTS-SEEE-EE-TTEEEEEETTTT
T ss_pred cccCCeEECC-CCEEEEEECCCCEEEEEECCCC----c-EEEE-eCCCceEEEEECCCC-CEEE-EE-CCeEEEEECCCC
Confidence 3567889983 3556777777899999999862 2 2222 245679999999998 6444 44 668999999988
Q ss_pred eEEEeecC-----CCceeEEEecCCCCCEEEEEEC-----------CCeEEEEECCCCccceeEeccCCCeEEEEEecCC
Q 009380 316 VFDLVYSS-----EYAVFSLSQQPNNVNTLYFGEG-----------QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRN 379 (536)
Q Consensus 316 ~~~~~~~~-----~~~i~~l~~~~~~~~~l~~g~~-----------dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~ 379 (536)
....+... ...+..+++.|++ +++++... .+.|..+|.. ++ +..+..+....+.++|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~-~~~~~~~~~~pngi~~spdg 160 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPD-HH-VKKYFDQVDISNGLDWSLDH 160 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTT-SC-EEEEEEEESBEEEEEECTTS
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECC-CC-EEEEeeccccccceEEcCCC
Confidence 76655432 2357889999998 55544322 2345555442 33 33333344567899999998
Q ss_pred CCEEEEEeCCCcEEEEeCC--CCCCCCCCcc-eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC
Q 009380 380 PNIMATSSTDGTACIWDLR--SMATDKPEPM-KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN 456 (536)
Q Consensus 380 ~~~l~s~s~dg~i~iwdl~--~~~~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~ 456 (536)
..++++.+.++.|.+||+. ++........ ....+......++++++|++.++...++.|.+||..+++.+..+....
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 5556667778899999974 3320000111 111234577899999999877777778889999998888777764321
Q ss_pred CCCceeeeeEEEEc-CCCCEEEEEcCC
Q 009380 457 QTGRWISSFRAIWG-WDDSCVFIGNMT 482 (536)
Q Consensus 457 ~~~~~~~~~~~~~s-~~g~~l~~gs~d 482 (536)
..++ .++|+ |+++.|++++..
T Consensus 241 ---~~~t--~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 241 ---DKTT--SCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp ---SBEE--EEEEESGGGCEEEEEEBC
T ss_pred ---CCce--EEEEeCCCCCEEEEEcCC
Confidence 2233 37787 888877766543
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.38 E-value=5.8e-12 Score=124.44 Aligned_cols=175 Identities=10% Similarity=-0.016 Sum_probs=131.4
Q ss_pred CEEEEEEecCCCCEEEEEECCCeEEEEECCCCe-----------EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEE
Q 009380 284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV-----------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIW 352 (536)
Q Consensus 284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~-----------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~ 352 (536)
+++.+++++.. .++++|+.++ +.+|++.... ......+.. |+.++| ++ ++|+++ .++.|++|
T Consensus 39 ~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG-DQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET-TEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC-CEEEEE-cCCcEEEE
Confidence 68899999998 8999999886 5569865332 112334566 999999 55 788888 88999999
Q ss_pred ECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEE
Q 009380 353 DVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATT 432 (536)
Q Consensus 353 d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~ 432 (536)
|+++.........|...+.++.+.+. + +++++.||.|.+||+..+. .. .+...|++++|||+| ++.|
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~-----~~---~~~~~Vs~v~WSpkG--~~vg 178 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKS-----TK---QLAQNVTSFDVTNSQ--LAVL 178 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCC-----EE---EEEESEEEEEECSSE--EEEE
T ss_pred EchhhhccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCc-----cc---cccCCceEEEEcCCc--eEEE
Confidence 99987766667778888998887752 3 8888999999999998753 11 256789999999999 7789
Q ss_pred eCCCcEEEEeCCCCCc--ceEEec----cCCCCceeeeeEEEEcCCCCEEEE
Q 009380 433 SFDDTIGIWSGVNFEN--TSMIHH----NNQTGRWISSFRAIWGWDDSCVFI 478 (536)
Q Consensus 433 s~dg~I~iwd~~~~~~--~~~~~~----~~~~~~~~~~~~~~~s~~g~~l~~ 478 (536)
..||++++|+...... ...+.. ....+....++.+.|.+++.++++
T Consensus 179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9999999998876664 444421 110111244555889998888776
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.37 E-value=4.7e-11 Score=119.60 Aligned_cols=265 Identities=10% Similarity=0.020 Sum_probs=176.1
Q ss_pred ceEEecccccCcccccccc--CCceEEEEEEecCCccEEEEEe----------CCCcEEEEECCCCCCCCCceEEeccC-
Q 009380 215 SCVDIGSLTLKPENIARIM--PGRITQMKFLPCSDVRMVVAGS----------KLGNITFWNLDSQQDEDNGIYLFRTH- 281 (536)
Q Consensus 215 g~v~lw~~~~~~~~~~~~~--~~~I~~v~~~p~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~~~h- 281 (536)
+.|.+.|...... +.... ..+ .++++| |+++|+++. .++.|.++|..+ ...+..+.--
T Consensus 99 ~~VsVID~~t~~v-v~~I~vG~~P--gia~Sp--Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t----~~vv~~I~v~g 169 (426)
T 3c75_H 99 TQQFVIDGSTGRI-LGMTDGGFLP--HPVAAE--DGSFFAQASTVFERIARGKRTDYVEVFDPVT----FLPIADIELPD 169 (426)
T ss_dssp EEEEEEETTTTEE-EEEEEECSSC--EEEECT--TSSCEEEEEEEEEETTEEEEEEEEEEECTTT----CCEEEEEEETT
T ss_pred CeEEEEECCCCEE-EEEEECCCCC--ceEECC--CCCEEEEEeccccccccCCCCCEEEEEECCC----CcEEEEEECCC
Confidence 6888888644322 11222 233 899999 998887775 367899999987 5555555321
Q ss_pred ------CCCEEEEEEecCCCCEEEEEEC--CCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEE
Q 009380 282 ------LGPISGIVTQQYCLSKIFTSCY--DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWD 353 (536)
Q Consensus 282 ------~~~V~~l~~~~~~~~~l~s~s~--dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d 353 (536)
......+.|+|++ ++|+.+.. ++.|.+.|+.+.+....+..... ....|++...+++.+.||.+.+.+
T Consensus 170 ~~r~~~g~~P~~~~~spDG-k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~ 245 (426)
T 3c75_H 170 APRFLVGTYQWMNALTPDN-KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVD 245 (426)
T ss_dssp CCCCCBSCCGGGSEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEE
T ss_pred ccccccCCCcceEEEcCCC-CEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEE
Confidence 1234578999999 88888874 58999999999887665544332 334455556778888899999999
Q ss_pred CCCCcccee----EeccCCCe-EEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--------cccCceeEE
Q 009380 354 VRSRKSATE----WLLHEARI-NTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--------SHKRAVHSA 420 (536)
Q Consensus 354 ~~~~~~~~~----~~~h~~~i-~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--------~~~~~v~~l 420 (536)
+.+++.... +.....++ ..+.|.+++.. ++..+..+.|.+.|+.............. ........+
T Consensus 246 ~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~-~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~v 324 (426)
T 3c75_H 246 FADGETKVTNTEVFHTEDELLINHPAFSLRSGR-LVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQT 324 (426)
T ss_dssp CCTTCCEEEECCCCSCTTSCBCSCCEECTTTCE-EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCE
T ss_pred CCCCcEEEEeeeeeccCCCceeeEeeecCCCCE-EEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceee
Confidence 866655422 21111221 23567887754 44445678999999865321000000000 011223347
Q ss_pred EEccCCCeEEEEeC----------CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC-EEEEEc-CCCcEEEE
Q 009380 421 YFSPSGSSLATTSF----------DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS-CVFIGN-MTRTVEVI 488 (536)
Q Consensus 421 ~~sp~g~~l~t~s~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs-~dg~I~v~ 488 (536)
+++|+++.+++... ++.|.++|..+.+.+..+.... ....+.|++||+ ++++.+ .++.|.|+
T Consensus 325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~------~P~gia~spDg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH------EIDSINVSQDAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC------CcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence 89999887777642 3579999999999888874322 233377999999 888888 58999999
Q ss_pred cCCccccceec
Q 009380 489 SPAQRRSVATL 499 (536)
Q Consensus 489 d~~~~~~~~~l 499 (536)
|..+++.+.++
T Consensus 399 D~~t~kvv~tI 409 (426)
T 3c75_H 399 DAATGEELRSV 409 (426)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCCEEEEe
Confidence 99999998886
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.36 E-value=6.4e-11 Score=128.00 Aligned_cols=249 Identities=12% Similarity=0.108 Sum_probs=160.7
Q ss_pred CccccccccCCceEEEEEEecCCccEEEEEe-----CCCcEEEEECCCCCCCCCceEE-eccCCCCEEEEEEecCCCCEE
Q 009380 225 KPENIARIMPGRITQMKFLPCSDVRMVVAGS-----KLGNITFWNLDSQQDEDNGIYL-FRTHLGPISGIVTQQYCLSKI 298 (536)
Q Consensus 225 ~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~-----~dg~v~iwd~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~l 298 (536)
++......+...+..++||| ||++||.+. ....|++||+.+ +..+.. +... ....++|+ |+ +.|
T Consensus 119 D~n~la~~~~~~l~~~~~Sp--Dg~~lAy~~~~~G~~~~~i~v~dl~t----g~~~~~~~~~~--k~~~~~Ws-Dg-~~l 188 (693)
T 3iuj_A 119 DPNTLSPDGTTALDQLSFSR--DGRILAYSLSLAGSDWREIHLMDVES----KQPLETPLKDV--KFSGISWL-GN-EGF 188 (693)
T ss_dssp CGGGGSTTSCCEEEEEEECT--TSSEEEEEEECSSCCEEEEEEEETTT----CSEEEEEEEEE--ESCCCEEE-TT-TEE
T ss_pred ehhhccCCCcEEEEEEEECC--CCCEEEEEEecCCCceEEEEEEECCC----CCCCccccCCc--eeccEEEe-CC-CEE
Confidence 33444455667899999999 999888542 235799999997 333322 2111 12467899 98 888
Q ss_pred EEEECCCe-------------EEEEECCCCeE--EEeecC----CCceeEEEecCCCCCEEEE-EEC---CCeEEEEECC
Q 009380 299 FTSCYDGL-------------IRLMDAEKEVF--DLVYSS----EYAVFSLSQQPNNVNTLYF-GEG---QGGLNIWDVR 355 (536)
Q Consensus 299 ~s~s~dg~-------------I~vwd~~~~~~--~~~~~~----~~~i~~l~~~~~~~~~l~~-g~~---dg~i~i~d~~ 355 (536)
+.++.+.. |++|++.++.. ..++.. ...+.++.|+|++ .+|+. ... ...|+++|+.
T Consensus 189 ~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~ 267 (693)
T 3iuj_A 189 FYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD-RFLLISAANSTSGNRLYVKDLS 267 (693)
T ss_dssp EEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS-CEEEEEEESSSSCCEEEEEETT
T ss_pred EEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC-CEEEEEEccCCCCcEEEEEECC
Confidence 88887743 99999987542 333332 3357889999999 55544 332 2589999998
Q ss_pred CCc-cceeEeccCCCeEEEEEecCCCCEEEEEeCC---CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEE
Q 009380 356 SRK-SATEWLLHEARINTIDFNPRNPNIMATSSTD---GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLAT 431 (536)
Q Consensus 356 ~~~-~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d---g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t 431 (536)
++. ....+..+....... |++++..+++....+ +.|..+|+.++.. .....+..|...+. .|++++++|+.
T Consensus 268 ~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~~--~~s~~g~~lv~ 342 (693)
T 3iuj_A 268 QENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP--AHWRDLIPERQQVL--TVHSGSGYLFA 342 (693)
T ss_dssp STTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECCCSSCE--EEEEETTEEEE
T ss_pred CCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc--cccEEEecCCCCEE--EEEEECCEEEE
Confidence 764 455666666666655 666676666666554 6799999987531 11234455665555 89999988877
Q ss_pred EeCCC---cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC----CcEEEEcCCccc
Q 009380 432 TSFDD---TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT----RTVEVISPAQRR 494 (536)
Q Consensus 432 ~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d----g~I~v~d~~~~~ 494 (536)
...++ .|++||+... ....+... ....+.. +.+++++..|+....+ +.|..||+.+++
T Consensus 343 ~~~~~g~~~l~~~d~~g~-~~~~l~~p--~~~~~~~--~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 343 EYMVDATARVEQFDYEGK-RVREVALP--GLGSVSG--FNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEETTEEEEEEECTTSC-EEEEECCS--SSSEEEE--CCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEECCeeEEEEEECCCC-eeEEeecC--CCceEEe--eecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 76544 6899998743 33333221 1112222 4567787766655444 789999987764
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.35 E-value=8.4e-10 Score=106.12 Aligned_cols=229 Identities=8% Similarity=-0.008 Sum_probs=146.5
Q ss_pred CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccc
Q 009380 281 HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA 360 (536)
Q Consensus 281 h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~ 360 (536)
+..-..+..|++++..++++...++.|..||..++... .+.....+.++++++++ + |+++. ++.|.+||..+++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~dG-~-l~v~~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPVSSVALRQSG-G-YVATI-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECSSCEEEEEEBTTS-S-EEEEE-TTEEEEEETTTTEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCCCceEEEEECCCC-C-EEEEE-CCeEEEEECCCCcEE
Confidence 34456688999976366677777899999999987653 34456789999999998 5 44455 568999999877643
Q ss_pred eeEec----cCCCeEEEEEecCCCCEEEEEeCC---------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCC
Q 009380 361 TEWLL----HEARINTIDFNPRNPNIMATSSTD---------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS 427 (536)
Q Consensus 361 ~~~~~----h~~~i~~i~~~p~~~~~l~s~s~d---------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 427 (536)
..... ....++.+++.|+| +++++.... ..-.||.+.... .......+....+.++|+|+++
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g----~~~~~~~~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDH----HVKKYFDQVDISNGLDWSLDHK 161 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTS----CEEEEEEEESBEEEEEECTTSC
T ss_pred EEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCC----CEEEEeeccccccceEEcCCCC
Confidence 22221 12347899999988 455544221 233455444311 2233334445678999999998
Q ss_pred eEEE-EeCCCcEEEEeC--CCCCcc--eEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC
Q 009380 428 SLAT-TSFDDTIGIWSG--VNFENT--SMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP 502 (536)
Q Consensus 428 ~l~t-~s~dg~I~iwd~--~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~ 502 (536)
.|+. .+.++.|.+||+ .++... ..+......... .-.++++++|.+.++....+.|.+||..+++.+..+..+
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~--p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQI--PDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCE--EEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCC--CCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 6654 456788999987 344321 112111111111 223667899987777777788999999988888887765
Q ss_pred ceeeeeeeEeec-CCCCCEEEE
Q 009380 503 YISAIPCRFHAH-PHQVGTLAG 523 (536)
Q Consensus 503 ~~~~~~~~~~~~-p~~~~~las 523 (536)
.... ..++|. | +++.|..
T Consensus 240 ~~~~--t~~~f~g~-d~~~L~v 258 (297)
T 3g4e_A 240 VDKT--TSCCFGGK-NYSEMYV 258 (297)
T ss_dssp SSBE--EEEEEESG-GGCEEEE
T ss_pred CCCc--eEEEEeCC-CCCEEEE
Confidence 3333 356676 5 4454443
No 216
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.34 E-value=2.1e-09 Score=107.01 Aligned_cols=258 Identities=14% Similarity=0.079 Sum_probs=165.7
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCc
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYA 326 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~ 326 (536)
++..|++++.++.|..+|..+ +..+..+............. + ..++.++.++.|..+|..+++....+.....
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~t----G~~~W~~~~~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~ 174 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSD----GTVAWQTKVAGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMP 174 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTT----CCEEEEEECSSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCEEEEEECCC-
T ss_pred eCCEEEEEcCCCEEEEEECCC----CCEEEEEeCCCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCC
Confidence 446778888899999999987 55555554433222222222 3 6888899999999999999887666554333
Q ss_pred ee------EEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCC----------e-EEEEEecCCCCEEEEEeCC
Q 009380 327 VF------SLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEAR----------I-NTIDFNPRNPNIMATSSTD 389 (536)
Q Consensus 327 i~------~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~----------i-~~i~~~p~~~~~l~s~s~d 389 (536)
+. ..... + ..+++++.+|.|..+|..+++.+......... + ...... + ..++.++.+
T Consensus 175 ~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~-~~v~~~~~~ 248 (376)
T 3q7m_A 175 SLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--N-GVVFALAYN 248 (376)
T ss_dssp ----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--T-TEEEEECTT
T ss_pred ceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--C-CEEEEEecC
Confidence 31 22222 2 47888899999999999999887666522110 1 111111 3 467777889
Q ss_pred CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEE
Q 009380 390 GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIW 469 (536)
Q Consensus 390 g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (536)
+.|..+|..+++ .... .. ......+.. ++..+++++.++.|..+|..+++......... ...... +..
T Consensus 249 g~l~~~d~~tG~----~~w~-~~-~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~--~~~~~~--~~~ 316 (376)
T 3q7m_A 249 GNLTALDLRSGQ----IMWK-RE-LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLL--HRLLTS--PVL 316 (376)
T ss_dssp SCEEEEETTTCC----EEEE-EC-CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTT--TSCCCC--CEE
T ss_pred cEEEEEECCCCc----EEee-cc-CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccC--CCcccC--CEE
Confidence 999999998864 1111 11 222334443 46678888889999999999988765553111 111111 111
Q ss_pred cCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 470 GWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 470 s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
.+..|++++.+|.|.++|..+++.+..+........ ..... .+..|+.++.+|.|+.|+.
T Consensus 317 --~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~-~~~~~---~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 317 --YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQ-TEPVA---ADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp --ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBC-SCCEE---ETTEEEEEBTTSCEEEEEC
T ss_pred --ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcce-eCCEE---ECCEEEEEeCCCEEEEEeC
Confidence 246888999999999999999988877664222222 11122 1378899999999999873
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.33 E-value=1.9e-09 Score=105.15 Aligned_cols=225 Identities=12% Similarity=0.006 Sum_probs=146.2
Q ss_pred eEEEEEEecCC-ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380 237 ITQMKFLPCSD-VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE 315 (536)
Q Consensus 237 I~~v~~~p~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~ 315 (536)
..+..|+| + +.+++++..++.|..|+..+ .. ...+. +...+.++.|++++ .++++ +.+ .|.+||..++
T Consensus 51 ~egp~~~~--~~~~l~~~d~~~~~i~~~d~~~----~~-~~~~~-~~~~v~~i~~~~dg-~l~v~-~~~-gl~~~d~~~g 119 (326)
T 2ghs_A 51 GEGPTFDP--ASGTAWWFNILERELHELHLAS----GR-KTVHA-LPFMGSALAKISDS-KQLIA-SDD-GLFLRDTATG 119 (326)
T ss_dssp EEEEEEET--TTTEEEEEEGGGTEEEEEETTT----TE-EEEEE-CSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTC
T ss_pred CcCCeEeC--CCCEEEEEECCCCEEEEEECCC----Cc-EEEEE-CCCcceEEEEeCCC-eEEEE-ECC-CEEEEECCCC
Confidence 46788998 5 56677777789999999875 22 22232 34679999999997 66554 444 4999999888
Q ss_pred eEEEeecC-----CCceeEEEecCCCCCEEEEEEC------CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEE
Q 009380 316 VFDLVYSS-----EYAVFSLSQQPNNVNTLYFGEG------QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMA 384 (536)
Q Consensus 316 ~~~~~~~~-----~~~i~~l~~~~~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~ 384 (536)
....+... ...+.++++++++ +++++... .+.|..+| +++. ..+..+....+.++|+|++..+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 120 VLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp CEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEE
T ss_pred cEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEE
Confidence 76554432 2358899999998 55554332 25677777 4443 333334456789999998854555
Q ss_pred EEeCCCcEEEEeCC--CC-CCCCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCc
Q 009380 385 TSSTDGTACIWDLR--SM-ATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGR 460 (536)
Q Consensus 385 s~s~dg~i~iwdl~--~~-~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 460 (536)
+.+.++.|.+||+. ++ ........... .....+..++++++|.++++...++.|.+||. +++....+... ..
T Consensus 196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~---~~ 271 (326)
T 2ghs_A 196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP---GK 271 (326)
T ss_dssp EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS---CS
T ss_pred EECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC---CC
Confidence 55667899999986 43 21111111111 23456788999999987777666788999998 55555544322 12
Q ss_pred eeeeeEEEEc-CCCCEEEEEcCC
Q 009380 461 WISSFRAIWG-WDDSCVFIGNMT 482 (536)
Q Consensus 461 ~~~~~~~~~s-~~g~~l~~gs~d 482 (536)
.+. .++|+ +++..|++++..
T Consensus 272 ~~~--~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 272 QTT--CPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp BEE--EEEEESTTSCEEEEEEBC
T ss_pred CcE--EEEEecCCCCEEEEEecC
Confidence 233 36787 888777666544
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.32 E-value=1.1e-09 Score=105.80 Aligned_cols=236 Identities=8% Similarity=-0.040 Sum_probs=150.5
Q ss_pred ceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEE
Q 009380 274 GIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWD 353 (536)
Q Consensus 274 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d 353 (536)
.+..+..+........|++++..++++...++.|..|+. ++...........+..+++.+++ +++++...++.|.+||
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSD 113 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEEC
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCC-CEEEEECCCCEEEEEC
Confidence 344444455667889999998336777778899999998 45555555566778999999998 6555544567899999
Q ss_pred CCCCccceeEecc-----CCCeEEEEEecCCCCEEEE----EeC-------------CCcEEEEeCCCCCCCCCCcceee
Q 009380 354 VRSRKSATEWLLH-----EARINTIDFNPRNPNIMAT----SST-------------DGTACIWDLRSMATDKPEPMKVL 411 (536)
Q Consensus 354 ~~~~~~~~~~~~h-----~~~i~~i~~~p~~~~~l~s----~s~-------------dg~i~iwdl~~~~~~~~~~~~~~ 411 (536)
.. ++. ..+..+ ...++.+.+.|+| .++++ |.. .+.|..||..+++ .....
T Consensus 114 ~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~-----~~~~~ 185 (305)
T 3dr2_A 114 AD-GQA-HLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-----LQRMA 185 (305)
T ss_dssp TT-SCE-EEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC-----CEEEE
T ss_pred CC-CCE-EEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc-----EEEEe
Confidence 75 543 222211 2346789999988 56665 332 2467778876543 22222
Q ss_pred cccCceeEEEEccCCCeEEEEeCC------CcEEEEeCCCCCcceEEe--ccCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380 412 SHKRAVHSAYFSPSGSSLATTSFD------DTIGIWSGVNFENTSMIH--HNNQTGRWISSFRAIWGWDDSCVFIGNMTR 483 (536)
Q Consensus 412 ~~~~~v~~l~~sp~g~~l~t~s~d------g~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg 483 (536)
.....+.++|+|+++.|+.+... +.|.+|++.... +.... .....+. . -.+.++++|+ |.+++.+
T Consensus 186 -~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~-p--dgi~~d~~G~-lwv~~~~- 258 (305)
T 3dr2_A 186 -DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGL-P--DGFCVDRGGW-LWSSSGT- 258 (305)
T ss_dssp -EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSC-C--CSEEECTTSC-EEECCSS-
T ss_pred -cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCC-C--CeEEECCCCC-EEEecCC-
Confidence 44566889999999988777665 689999986543 21111 0101111 1 1255788998 5555544
Q ss_pred cEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEE
Q 009380 484 TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY 531 (536)
Q Consensus 484 ~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~ 531 (536)
.|.+|+.. ++.+..+..+. . +..++|.| +++.|..++.++..+
T Consensus 259 gv~~~~~~-g~~~~~~~~~~-~--~~~~~f~~-d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 259 GVCVFDSD-GQLLGHIPTPG-T--ASNCTFDQ-AQQRLFITGGPCLWM 301 (305)
T ss_dssp EEEEECTT-SCEEEEEECSS-C--CCEEEECT-TSCEEEEEETTEEEE
T ss_pred cEEEECCC-CCEEEEEECCC-c--eeEEEEeC-CCCEEEEEcCCeEEE
Confidence 49999984 55666665543 2 34566776 557777777665433
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.31 E-value=4.7e-10 Score=108.35 Aligned_cols=227 Identities=11% Similarity=0.017 Sum_probs=149.6
Q ss_pred CceEEEEEEecCCcc-EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 235 GRITQMKFLPCSDVR-MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
.......|+| +++ +++++..++.|..|+.. +. ...+..+...+..+++++++ +++++...++.|.+|+..
T Consensus 45 ~~~egp~~~~--~g~~l~~~d~~~~~i~~~~~~-----g~-~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 45 TWSEGPAWWE--AQRTLVWSDLVGRRVLGWRED-----GT-VDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp SSEEEEEEEG--GGTEEEEEETTTTEEEEEETT-----SC-EEEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECTT
T ss_pred cCccCCeEeC--CCCEEEEEECCCCEEEEEeCC-----CC-EEEEeCCCCccceeeECCCC-CEEEEECCCCEEEEECCC
Confidence 4567899999 887 67777788999999874 22 34555567789999999998 765555556889999987
Q ss_pred CCeEEEeecC-----CCceeEEEecCCCCCEEEE----EEC-------------CCeEEEEECCCCccceeEeccCCCeE
Q 009380 314 KEVFDLVYSS-----EYAVFSLSQQPNNVNTLYF----GEG-------------QGGLNIWDVRSRKSATEWLLHEARIN 371 (536)
Q Consensus 314 ~~~~~~~~~~-----~~~i~~l~~~~~~~~~l~~----g~~-------------dg~i~i~d~~~~~~~~~~~~h~~~i~ 371 (536)
+....+... ...+.++++.+++ +++++ |.. .+.|..||..+++..... .....+
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~ 191 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN 191 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred -CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence 554433321 1346789999998 66664 332 357888888777654333 445678
Q ss_pred EEEEecCCCCEEEEEeCC------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380 372 TIDFNPRNPNIMATSSTD------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 372 ~i~~~p~~~~~l~s~s~d------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~ 445 (536)
.++|+|++ ..|+.+... +.|.+||+........... ..........++++++|+ |.+++.++ |.+|+. +
T Consensus 192 gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~-~~~~~~~pdgi~~d~~G~-lwv~~~~g-v~~~~~-~ 266 (305)
T 3dr2_A 192 GLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHF-ASVPDGLPDGFCVDRGGW-LWSSSGTG-VCVFDS-D 266 (305)
T ss_dssp EEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEE-ECCSSSCCCSEEECTTSC-EEECCSSE-EEEECT-T
T ss_pred ceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEE-EECCCCCCCeEEECCCCC-EEEecCCc-EEEECC-C
Confidence 99999988 555555544 6899999875310000000 011234456789999998 44445554 999997 4
Q ss_pred CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380 446 FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV 485 (536)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I 485 (536)
++....+.... . ...++|+++++.|++++.++..
T Consensus 267 g~~~~~~~~~~----~--~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 267 GQLLGHIPTPG----T--ASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp SCEEEEEECSS----C--CCEEEECTTSCEEEEEETTEEE
T ss_pred CCEEEEEECCC----c--eeEEEEeCCCCEEEEEcCCeEE
Confidence 55555554322 1 2236788999888888776533
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.29 E-value=1.8e-10 Score=124.39 Aligned_cols=250 Identities=10% Similarity=-0.012 Sum_probs=161.9
Q ss_pred cccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCc--eEEEEEEecCCccEEEEEeCC
Q 009380 180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGR--ITQMKFLPCSDVRMVVAGSKL 257 (536)
Q Consensus 180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~--I~~v~~~p~~~~~~l~tg~~d 257 (536)
.+|...+..+.+||||+.+++..+. .++....|++||+...... ..+... ...++|+ |++.|+.++.+
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~-----~G~~~~~i~v~dl~tg~~~--~~~~~~~k~~~~~Ws---Dg~~l~y~~~~ 194 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSL-----AGSDWREIHLMDVESKQPL--ETPLKDVKFSGISWL---GNEGFFYSSYD 194 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEEC-----SSCCEEEEEEEETTTCSEE--EEEEEEEESCCCEEE---TTTEEEEEESS
T ss_pred CCCcEEEEEEEECCCCCEEEEEEec-----CCCceEEEEEEECCCCCCC--ccccCCceeccEEEe---CCCEEEEEEec
Confidence 3455678888999999999976321 1222357899998654422 222222 3677888 55667777666
Q ss_pred C-------------cEEEEECCCCCCCCCceEEecc-CCCCEEEEEEecCCCCEEE-EEEC---CCeEEEEECCCC--eE
Q 009380 258 G-------------NITFWNLDSQQDEDNGIYLFRT-HLGPISGIVTQQYCLSKIF-TSCY---DGLIRLMDAEKE--VF 317 (536)
Q Consensus 258 g-------------~v~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~-s~s~---dg~I~vwd~~~~--~~ 317 (536)
. .|++|++.+.......+..... |...+..+.|+|++ ++|+ +.+. ++.|.++|+.++ ..
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~~~~~~ 273 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD-RFLLISAANSTSGNRLYVKDLSQENAPL 273 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS-CEEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC-CEEEEEEccCCCCcEEEEEECCCCCCce
Confidence 4 3999999874322234444444 56668899999999 6664 4432 358999999876 55
Q ss_pred EEeecCCCceeEEEecCCCCCEEEEEECC---CeEEEEECCCCcc--ceeEeccCCCeEEEEEecCCCCEEEEEeCCC--
Q 009380 318 DLVYSSEYAVFSLSQQPNNVNTLYFGEGQ---GGLNIWDVRSRKS--ATEWLLHEARINTIDFNPRNPNIMATSSTDG-- 390 (536)
Q Consensus 318 ~~~~~~~~~i~~l~~~~~~~~~l~~g~~d---g~i~i~d~~~~~~--~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg-- 390 (536)
..+..+....... +++++..+++....+ +.|..+|+.++.. ...+..|...+. .|++++..++++...++
T Consensus 274 ~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 274 LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEE
T ss_pred EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCee
Confidence 5555555555554 566664455554443 6899999988764 355666766665 88888755555555555
Q ss_pred cEEEEeCCCCCCCCCCccee-ecccCceeEEEEccCCCeEEEEeCC----CcEEEEeCCCCCc
Q 009380 391 TACIWDLRSMATDKPEPMKV-LSHKRAVHSAYFSPSGSSLATTSFD----DTIGIWSGVNFEN 448 (536)
Q Consensus 391 ~i~iwdl~~~~~~~~~~~~~-~~~~~~v~~l~~sp~g~~l~t~s~d----g~I~iwd~~~~~~ 448 (536)
.|++||+... ....+ ......+..+.+++++..|+....+ ++|..||+.+++.
T Consensus 351 ~l~~~d~~g~-----~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 351 RVEQFDYEGK-----RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEEECTTSC-----EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEEEEECCCC-----eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 6889998752 12222 2344567788888888776665544 7899999877653
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.27 E-value=2.6e-09 Score=106.26 Aligned_cols=260 Identities=9% Similarity=0.017 Sum_probs=163.2
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC---------CCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH---------LGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF 317 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h---------~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~ 317 (536)
.+..|++++.++.|..||..+ ++.+..+... ...+.+.-. .++ ..++.++.++.|..+|..+++.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~v~~~~g~l~a~d~~tG~~ 125 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADD----GKEIWSVSLAEKDGWFSKEPALLSGGVT-VSG-GHVYIGSEKAQVYALNTSDGTV 125 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTT----CCEEEEEECCC---CCSCCCCCEEEEEE-EET-TEEEEEETTSEEEEEETTTCCE
T ss_pred ECCEEEEEcCCCeEEEEEccC----CceeeeecCccccccccccCcccccCce-EeC-CEEEEEcCCCEEEEEECCCCCE
Confidence 345777788889999999987 4555444432 223332222 234 6888899999999999999887
Q ss_pred EEeecCCCceeE-EEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCe-----EEEEEecCCCCEEEEEeCCCc
Q 009380 318 DLVYSSEYAVFS-LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARI-----NTIDFNPRNPNIMATSSTDGT 391 (536)
Q Consensus 318 ~~~~~~~~~i~~-l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i-----~~i~~~p~~~~~l~s~s~dg~ 391 (536)
.........+.+ .... + ..+++++.++.|..+|..+++.+..+....... ...... + ..++.++.++.
T Consensus 126 ~W~~~~~~~~~~~p~~~-~--~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~ 199 (376)
T 3q7m_A 126 AWQTKVAGEALSRPVVS-D--GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGR 199 (376)
T ss_dssp EEEEECSSCCCSCCEEE-T--TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTE
T ss_pred EEEEeCCCceEcCCEEE-C--CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCE
Confidence 655544333322 1222 2 478889999999999999999877765332211 222222 2 36777888999
Q ss_pred EEEEeCCCCCCCCCCcceeecc-c-C-----ceeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCcee
Q 009380 392 ACIWDLRSMATDKPEPMKVLSH-K-R-----AVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWI 462 (536)
Q Consensus 392 i~iwdl~~~~~~~~~~~~~~~~-~-~-----~v~~l~~sp--~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 462 (536)
|..+|..+++ ........ . . .+..+...| .+..+++++.++.|..+|..+++........ ..
T Consensus 200 l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----~~- 270 (376)
T 3q7m_A 200 VSAVLMEQGQ----MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG----SV- 270 (376)
T ss_dssp EEEEETTTCC----EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC----CE-
T ss_pred EEEEECCCCc----EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC----CC-
Confidence 9999998864 21111110 0 0 000011112 3467888888999999999988876655321 11
Q ss_pred eeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 463 SSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 463 ~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
.. +. .++..|++++.++.|..+|..+++.+........... ..... .+..|+.++.+|.|++||.
T Consensus 271 ~~--~~--~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~-~~~~~---~~~~l~v~~~~g~l~~~d~ 335 (376)
T 3q7m_A 271 ND--FI--VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLL-TSPVL---YNGNLVVGDSEGYLHWINV 335 (376)
T ss_dssp EE--EE--EETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCC-CCCEE---ETTEEEEECTTSEEEEEET
T ss_pred CC--ce--EECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcc-cCCEE---ECCEEEEEeCCCeEEEEEC
Confidence 11 11 2456788888899999999999988776652111111 11111 1378889999999999985
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.27 E-value=2.9e-09 Score=103.82 Aligned_cols=222 Identities=10% Similarity=-0.008 Sum_probs=141.3
Q ss_pred ceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEE
Q 009380 185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWN 264 (536)
Q Consensus 185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd 264 (536)
..+.+.+++++..+... ...++.|..|+........ ..+...+.+++|+| ++.++++. .+ .|.+||
T Consensus 50 ~~egp~~~~~~~~l~~~---------d~~~~~i~~~d~~~~~~~~-~~~~~~v~~i~~~~--dg~l~v~~-~~-gl~~~d 115 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWF---------NILERELHELHLASGRKTV-HALPFMGSALAKIS--DSKQLIAS-DD-GLFLRD 115 (326)
T ss_dssp BEEEEEEETTTTEEEEE---------EGGGTEEEEEETTTTEEEE-EECSSCEEEEEEEE--TTEEEEEE-TT-EEEEEE
T ss_pred CCcCCeEeCCCCEEEEE---------ECCCCEEEEEECCCCcEEE-EECCCcceEEEEeC--CCeEEEEE-CC-CEEEEE
Confidence 34567778875544322 2335678888865433222 22357899999999 88877764 33 499999
Q ss_pred CCCCCCCCCceEEeccC-----CCCEEEEEEecCCCCEEEEEEC------CCeEEEEECCCCeEEEeecCCCceeEEEec
Q 009380 265 LDSQQDEDNGIYLFRTH-----LGPISGIVTQQYCLSKIFTSCY------DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQ 333 (536)
Q Consensus 265 ~~~~~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~~l~s~s~------dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~ 333 (536)
..++ .. ..+... ...+.++.++|+| .++++... .+.|..++ ++....+.........++|+
T Consensus 116 ~~~g----~~-~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s 187 (326)
T 2ghs_A 116 TATG----VL-TLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFS 187 (326)
T ss_dssp TTTC----CE-EEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEEC
T ss_pred CCCC----cE-EEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEc
Confidence 8762 22 222111 2358899999998 66665432 24566666 56555444444457789999
Q ss_pred CCCCCEEEEE-ECCCeEEEEECC--CC-ccc--eeE---eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 009380 334 PNNVNTLYFG-EGQGGLNIWDVR--SR-KSA--TEW---LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK 404 (536)
Q Consensus 334 ~~~~~~l~~g-~~dg~i~i~d~~--~~-~~~--~~~---~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~ 404 (536)
|++ +.++++ +.++.|.+||+. ++ ... ..+ ......+..+++.++| +++++...++.|.+||.. ++
T Consensus 188 ~dg-~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~-g~--- 261 (326)
T 2ghs_A 188 PDG-TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTD-GN--- 261 (326)
T ss_dssp TTS-CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTT-CC---
T ss_pred CCC-CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCC-CC---
Confidence 998 555554 457899999986 55 321 122 2234557889999987 566666667889999983 32
Q ss_pred CCcceeecccCceeEEEEc-cCCCeEEEEeCC
Q 009380 405 PEPMKVLSHKRAVHSAYFS-PSGSSLATTSFD 435 (536)
Q Consensus 405 ~~~~~~~~~~~~v~~l~~s-p~g~~l~t~s~d 435 (536)
....+..+...+.+++|+ |++..|++++..
T Consensus 262 -~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 262 -HIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp -EEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred -EEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 223333455679999998 888777655543
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.26 E-value=4.8e-10 Score=110.41 Aligned_cols=264 Identities=8% Similarity=-0.097 Sum_probs=168.5
Q ss_pred cEEEEEeCCC----cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE----------CCCeEEEEECCC
Q 009380 249 RMVVAGSKLG----NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC----------YDGLIRLMDAEK 314 (536)
Q Consensus 249 ~~l~tg~~dg----~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s----------~dg~I~vwd~~~ 314 (536)
..+++-..++ +|.++|..+ .+.+..+..-..+ .+.++|++ .+++.+. .++.|.+||+.+
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t----~~v~~~i~vG~~P--~i~~spDg-~~lyVan~~~~r~~~G~~~~~VsviD~~T 105 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGC----GVTLGHSLGAFLS--LAVAGHSG-SDFALASTSFARSAKGKRTDYVEVFDPVT 105 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTT----TEEEEEEEECTTC--EEEECTTS-SCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred eEEEECCccCCccceEEEEECCC----CeEEEEEeCCCCC--ceEECCCC-CEEEEEcccccccccCCCCCEEEEEECCC
Confidence 3444444444 788999988 6777777765566 79999999 7777775 378999999999
Q ss_pred CeEEEeecCC--------CceeEEEecCCCCCEEEEEEC--CCeEEE--EECCCCccceeEeccCCCeEEEEEecCCCCE
Q 009380 315 EVFDLVYSSE--------YAVFSLSQQPNNVNTLYFGEG--QGGLNI--WDVRSRKSATEWLLHEARINTIDFNPRNPNI 382 (536)
Q Consensus 315 ~~~~~~~~~~--------~~i~~l~~~~~~~~~l~~g~~--dg~i~i--~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~ 382 (536)
++........ .....++++|++ ++++++.. +..|.+ +|+.+ +..+... +. +.+.|++...
T Consensus 106 ~~vv~~I~v~~~~~~~~g~~P~~ia~SpDG-k~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~ 177 (368)
T 1mda_H 106 FLPIADIELPDAPRFSVGPRVHIIGNCASS-ACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAAT 177 (368)
T ss_dssp CCEEEEEEETTSCSCCBSCCTTSEEECTTS-SCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTE
T ss_pred CCEEEEEECCCccccccCCCcceEEEcCCC-CEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeE
Confidence 8776554322 346789999999 67777764 457888 99877 4444321 11 2345666677
Q ss_pred EEEEeCCCcEEEEeCCC-----CCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc--eEEecc
Q 009380 383 MATSSTDGTACIWDLRS-----MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--SMIHHN 455 (536)
Q Consensus 383 l~s~s~dg~i~iwdl~~-----~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~--~~~~~~ 455 (536)
+++.+.||.+.+.|+.+ ++........+.-...+. . .+++..++..+. +.|.+.|....... ..+...
T Consensus 178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~ 252 (368)
T 1mda_H 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGN 252 (368)
T ss_dssp EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSS
T ss_pred EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEec
Confidence 77888899999999876 221100000011112233 3 566666666666 89999998653211 111100
Q ss_pred C----CCCceeee-eEEEEcCCCCEEEEEcC---------CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCC-E
Q 009380 456 N----QTGRWISS-FRAIWGWDDSCVFIGNM---------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-T 520 (536)
Q Consensus 456 ~----~~~~~~~~-~~~~~s~~g~~l~~gs~---------dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~-~ 520 (536)
. ..+..... -.+.++++++.++++.. ++.+.++|..+.+.+.++..+. .+..+.++| ++. .
T Consensus 253 ~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p~gi~~s~-Dg~~l 328 (368)
T 1mda_H 253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAIIAAQ-DGASD 328 (368)
T ss_dssp CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEEEECC-SSSCE
T ss_pred cccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---CcceEEECC-CCCEE
Confidence 0 00000000 01458999998887643 2356699999999998887543 345788888 445 5
Q ss_pred EEEEc-cCCeEEEEecC
Q 009380 521 LAGAT-GGGQVYVWTSD 536 (536)
Q Consensus 521 lasgs-~Dg~v~iW~~d 536 (536)
+++.. .++.|.|+|++
T Consensus 329 ~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 329 NYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEEEETTTTEEEEEESS
T ss_pred EEEccCCCCeEEEEECC
Confidence 66666 59999999974
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.25 E-value=6.9e-13 Score=132.00 Aligned_cols=255 Identities=9% Similarity=0.036 Sum_probs=139.7
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC--
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE-- 324 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~-- 324 (536)
++..|++++.||.|..||..+ ++.+..+.. +.+.+..+..++ ..+++++.||.|+.||..+++........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~t----G~~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRT----GSIKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTT----CCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCC----CCEEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 677899999999999999988 666766665 455555555666 67888889999999999887654433221
Q ss_pred CceeE-EEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 009380 325 YAVFS-LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD 403 (536)
Q Consensus 325 ~~i~~-l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~ 403 (536)
..+.+ ..+. .+ ..+++++.++.|+.||..+|+.+..+..+. .+.++|++ ..+++++.|+.|+.||.++++.
T Consensus 81 ~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~- 152 (369)
T 2hz6_A 81 ELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPST-SLLYLGRTEYTITMYDTKTREL- 152 (369)
T ss_dssp HHHTTCSCC-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSC-
T ss_pred cccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccC-CEEEEEecCCEEEEEECCCCCE-
Confidence 11111 1111 23 478888999999999999999887776543 23456655 5788888899999999998752
Q ss_pred CCCcceeecccCceeEEEEccCC---CeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEE----
Q 009380 404 KPEPMKVLSHKRAVHSAYFSPSG---SSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCV---- 476 (536)
Q Consensus 404 ~~~~~~~~~~~~~v~~l~~sp~g---~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l---- 476 (536)
......+ ......++++. ..+++++.||.|..||..+++.+.......+ .+.. ..++.+|...
T Consensus 153 ---~W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~p---v~~~--~~~~~dg~~~v~~~ 222 (369)
T 2hz6_A 153 ---RWNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASP---VVAF--YVWQREGLRKVMHI 222 (369)
T ss_dssp ---CCEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSC---EEEE--EECTTSSCEEECCE
T ss_pred ---EEeEecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCc---eEEE--EEecCCceEeccce
Confidence 2222111 11223333332 5678889999999999999987766653221 1111 3345555431
Q ss_pred EEEcCCCcEEEEcCCccc----cceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 477 FIGNMTRTVEVISPAQRR----SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 477 ~~gs~dg~I~v~d~~~~~----~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
+.+ ++.++.+|..+|+ .+..+........ ... .+..|+.++.||.|+.++
T Consensus 223 ~~~--~~~l~~ld~~tG~~~~~~~W~~~~~~~~~s---p~~---~~g~lyv~~~~G~l~al~ 276 (369)
T 2hz6_A 223 NVA--VETLRYLTFMSGEVGRITKWKYPFPKETEA---KSK---LTPTLYVGKYSTSLYASP 276 (369)
T ss_dssp EEE--HHHHHHHHHHHHHHHHHHTSCCCCCCHHHH---HHH---SEEEECBEECSSCEECCE
T ss_pred eec--ccceeeeehhcCCcccceeeeeccCccccc---ccc---ccceEEEecccCCEEecC
Confidence 222 3457778877777 5555543221100 001 135777888888887765
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.21 E-value=6.4e-10 Score=109.35 Aligned_cols=241 Identities=12% Similarity=0.063 Sum_probs=151.1
Q ss_pred CceEEEEEEecCCccEEEEEe--CCCcEEEEECCCCCCCCCceEEe-------ccCCCCEEEEEEecCCCCEEEEEEC--
Q 009380 235 GRITQMKFLPCSDVRMVVAGS--KLGNITFWNLDSQQDEDNGIYLF-------RTHLGPISGIVTQQYCLSKIFTSCY-- 303 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~--~dg~v~iwd~~~~~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~~l~s~s~-- 303 (536)
.....|+++| +|+++++.. .++.++||.+.+ +. +..+ ..|...+.++++.+++ .++++-..
T Consensus 17 ~~p~~va~~~--~g~~~v~~~~~~~~~~~l~~~~~----g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~ 88 (343)
T 2qe8_A 17 LAPGNITLTP--DGRLFLSLHQFYQPEMQVAELTQ----DG-LIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQ 88 (343)
T ss_dssp SCEEEEEECT--TSCEEEEECGGGCCSCSEEEEET----TE-EEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHH
T ss_pred CCcceEEECC--CCCEEEEeCCCCCCceEEEEECC----CC-eecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCC
Confidence 6789999999 999888864 234356666643 22 2222 2355789999999997 55554433
Q ss_pred ---CCeEEEEECCCCeEEEeecC-------CCceeEEEecCCCCCEEEEEE---CCCeEEEEECCCCccceeEecc----
Q 009380 304 ---DGLIRLMDAEKEVFDLVYSS-------EYAVFSLSQQPNNVNTLYFGE---GQGGLNIWDVRSRKSATEWLLH---- 366 (536)
Q Consensus 304 ---dg~I~vwd~~~~~~~~~~~~-------~~~i~~l~~~~~~~~~l~~g~---~dg~i~i~d~~~~~~~~~~~~h---- 366 (536)
++.|.+||+.+++....+.. ...+..+++.+++...+++.. .++.|.+||+.+++....+..|
T Consensus 89 ~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~ 168 (343)
T 2qe8_A 89 SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA 168 (343)
T ss_dssp HTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred cCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc
Confidence 57899999998875544332 234688999986533334444 5789999999877654443221
Q ss_pred -------------------------CCCeEEEEEecCCCCEEEEEeCCC-cEEEEeCCCCCC---CCC---Ccceeeccc
Q 009380 367 -------------------------EARINTIDFNPRNPNIMATSSTDG-TACIWDLRSMAT---DKP---EPMKVLSHK 414 (536)
Q Consensus 367 -------------------------~~~i~~i~~~p~~~~~l~s~s~dg-~i~iwdl~~~~~---~~~---~~~~~~~~~ 414 (536)
...++.|+|+|++ ..|+.+..++ .|..++...... ... ..+...++.
T Consensus 169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 247 (343)
T 2qe8_A 169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEK 247 (343)
T ss_dssp CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEEC
T ss_pred ccccceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccC
Confidence 1236889999988 5666666555 455554321100 000 011223445
Q ss_pred CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380 415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488 (536)
Q Consensus 415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~ 488 (536)
.....++++++|.++++...++.|.+||..+++....... ....+.. .+++++++.++++.+..+.+.+|
T Consensus 248 g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~--~~~~~p~--~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 248 PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD--EKLSWTD--SFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC--GGGSCEE--EEEECTTSCEEEEECCGGGSGGG
T ss_pred CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC--CceecCC--eeEECCCCcEEEEeCcccccccc
Confidence 5677899999999888888899999999855543222221 1122223 36788888877777655544333
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.20 E-value=2.7e-09 Score=114.52 Aligned_cols=239 Identities=15% Similarity=0.127 Sum_probs=159.6
Q ss_pred ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC-C----CCEEEEEEecCCCCEEEEEEC------CCeEEEEECCCCe
Q 009380 248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH-L----GPISGIVTQQYCLSKIFTSCY------DGLIRLMDAEKEV 316 (536)
Q Consensus 248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h-~----~~V~~l~~~~~~~~~l~s~s~------dg~I~vwd~~~~~ 316 (536)
+..|++++.|+.|..+|..+ ++.+..+..+ . ..+.+--.. .+ ..++.++. +|.|+.||..+++
T Consensus 128 ~~~v~v~~~dg~l~alD~~t----G~~~W~~~~~~~~~~~~~~~~~p~v-~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAAT----GKEVWHQNTFEGQKGSLTITGAPRV-FK-GKVIIGNGGAEYGVRGYITAYDAETGE 201 (677)
T ss_dssp TTEEEEECTTSEEEEEETTT----CCEEEEEETTTTCCSSCBCCSCCEE-ET-TEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CCEEEEEcCCCEEEEEECCC----CCEEeeecCCcCcCcCcccccCcEE-EC-CEEEEEecccccCCCCEEEEEECCCCc
Confidence 45788888999999999988 6666666544 1 112111111 13 46666553 7999999999998
Q ss_pred EEEeecCCC---------------------------------ceeEEEecCCCCCEEEEEECCC----------------
Q 009380 317 FDLVYSSEY---------------------------------AVFSLSQQPNNVNTLYFGEGQG---------------- 347 (536)
Q Consensus 317 ~~~~~~~~~---------------------------------~i~~l~~~~~~~~~l~~g~~dg---------------- 347 (536)
....+.... ....+++.+++ .++++++.++
T Consensus 202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~ 280 (677)
T 1kb0_A 202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNL 280 (677)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCe
Confidence 765443211 11357788887 7888887764
Q ss_pred ---eEEEEECCCCccceeEec--cC-------CCeEEEEEecCCC--CEEEEEeCCCcEEEEeCCCCCCCCCCcceee-c
Q 009380 348 ---GLNIWDVRSRKSATEWLL--HE-------ARINTIDFNPRNP--NIMATSSTDGTACIWDLRSMATDKPEPMKVL-S 412 (536)
Q Consensus 348 ---~i~i~d~~~~~~~~~~~~--h~-------~~i~~i~~~p~~~--~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~ 412 (536)
.|..+|..+++.+..++. |. ....-+....+|. ..++.++.+|.|+++|..+++. +.... .
T Consensus 281 ~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~----l~~~~~~ 356 (677)
T 1kb0_A 281 YLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF----ISAKNFV 356 (677)
T ss_dssp TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE----EEEEESS
T ss_pred eeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE----ecccccc
Confidence 599999999998877763 21 1122233333442 5788999999999999998752 11110 0
Q ss_pred ----------ccCc------------------------eeEEEEccCCCeEEEEeC------------------------
Q 009380 413 ----------HKRA------------------------VHSAYFSPSGSSLATTSF------------------------ 434 (536)
Q Consensus 413 ----------~~~~------------------------v~~l~~sp~g~~l~t~s~------------------------ 434 (536)
.... -..++|+|++.++++...
T Consensus 357 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~ 436 (677)
T 1kb0_A 357 PVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQS 436 (677)
T ss_dssp CCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTG
T ss_pred ccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccc
Confidence 0000 125789998888877543
Q ss_pred -------------------CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380 435 -------------------DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS 495 (536)
Q Consensus 435 -------------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~ 495 (536)
.+.|..||+.+++.+..+.+..... ...+...+..+++++.|+.+++||..+++.
T Consensus 437 ~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~------~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 437 GTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWN------GGTLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp GGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCC------CCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCc------CcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 2779999999998887776533211 122345777899999999999999999999
Q ss_pred ceeccCCc
Q 009380 496 VATLQSPY 503 (536)
Q Consensus 496 ~~~l~~~~ 503 (536)
+.++...+
T Consensus 511 lw~~~~~~ 518 (677)
T 1kb0_A 511 LWEAPTGT 518 (677)
T ss_dssp EEEEECSS
T ss_pred eeeeeCCC
Confidence 99887543
No 227
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.19 E-value=1.5e-10 Score=114.02 Aligned_cols=260 Identities=8% Similarity=-0.050 Sum_probs=162.8
Q ss_pred eEEecccccCccc-cccccCCceEEEEEEecCCccEEEEEe----------CCCcEEEEECCCCCCCCCceEEeccC---
Q 009380 216 CVDIGSLTLKPEN-IARIMPGRITQMKFLPCSDVRMVVAGS----------KLGNITFWNLDSQQDEDNGIYLFRTH--- 281 (536)
Q Consensus 216 ~v~lw~~~~~~~~-~~~~~~~~I~~v~~~p~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~~~h--- 281 (536)
.|.+.|....... ....-..+ .+.++| |+++++++. .++.|.+||+.+ .+.+..+..+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~sp--Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T----~~vv~~I~v~~~~ 118 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGH--SGSDFALASTSFARSAKGKRTDYVEVFDPVT----FLPIADIELPDAP 118 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECT--TSSCEEEEEEEETTTTSSSEEEEEEEECTTT----CCEEEEEEETTSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECC--CCCEEEEEcccccccccCCCCCEEEEEECCC----CCEEEEEECCCcc
Confidence 6667775432211 11112334 799999 998888876 368899999998 6677776533
Q ss_pred ----CCCEEEEEEecCCCCEEEEEEC--CCeEEE--EECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEE
Q 009380 282 ----LGPISGIVTQQYCLSKIFTSCY--DGLIRL--MDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWD 353 (536)
Q Consensus 282 ----~~~V~~l~~~~~~~~~l~s~s~--dg~I~v--wd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d 353 (536)
......+.++|++ ++++++.. +..|.+ +|+.+ ... ...... +.+.|++...+++.+.||.+.+.|
T Consensus 119 ~~~~g~~P~~ia~SpDG-k~lyVan~~~~~~v~V~~iD~~t--v~~-i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd 191 (368)
T 1mda_H 119 RFSVGPRVHIIGNCASS-ACLLFFLFGSSAAAGLSVPGASD--DQL-TKSASC---FHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp SCCBSCCTTSEEECTTS-SCEEEEECSSSCEEEEEETTTEE--EEE-EECSSC---CCCEEEETTEEECCCCTTSCEEEE
T ss_pred ccccCCCcceEEEcCCC-CEEEEEccCCCCeEEEEEEchhh--ceE-EECCCc---eEEccCCCeEEEEEcCCCCEEEEE
Confidence 1234578999999 88888875 467888 99877 222 222121 224456656777778889999999
Q ss_pred CCC-----Cccce----eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-----c---ccCc
Q 009380 354 VRS-----RKSAT----EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-----S---HKRA 416 (536)
Q Consensus 354 ~~~-----~~~~~----~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-----~---~~~~ 416 (536)
+.+ ++.+. .+.....+. . .+++.. ++..+. +.|.+.|+............+. . ....
T Consensus 192 ~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~-~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 192 LAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGM-LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp CCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTE-EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred CccccccCCeEEEEeeeeeeCCCCcc---c-cccCCE-EEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence 886 43321 111122333 3 555644 444445 8999999865321000000000 0 1122
Q ss_pred eeEEEEccCCCeEEEEeC---------CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCE-EEEEc-CCCcE
Q 009380 417 VHSAYFSPSGSSLATTSF---------DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC-VFIGN-MTRTV 485 (536)
Q Consensus 417 v~~l~~sp~g~~l~t~s~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-l~~gs-~dg~I 485 (536)
...+.|+|+++.++++.. ++.+.++|+.+.+.+..+.... ....+.|++||++ +++.. .++.|
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~------~p~gi~~s~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH------DSDAIIAAQDGASDNYANSAGTEVL 339 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE------EECEEEECCSSSCEEEEEETTTTEE
T ss_pred ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC------CcceEEECCCCCEEEEEccCCCCeE
Confidence 233789999988887543 2356799999988777664322 1333778999985 45555 48999
Q ss_pred EEEcCCccccceeccCC
Q 009380 486 EVISPAQRRSVATLQSP 502 (536)
Q Consensus 486 ~v~d~~~~~~~~~l~~~ 502 (536)
.|+|+.+++.+.++..+
T Consensus 340 sVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 340 DIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEEESSSCEEEEECCCC
T ss_pred EEEECCCCcEEEEEECC
Confidence 99999999999888753
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.17 E-value=5.9e-09 Score=112.05 Aligned_cols=272 Identities=13% Similarity=0.165 Sum_probs=169.0
Q ss_pred ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC----------CE-EEEEEecCCCCEEEEEECCCeEEEEECCCCe
Q 009380 248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG----------PI-SGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV 316 (536)
Q Consensus 248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~----------~V-~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~ 316 (536)
+..|++++.++.|..+|..+ ++.+..+..+.. .+ ..+.+ .+ ..|+.++.|+.|..+|..+++
T Consensus 70 ~g~vyv~~~~~~v~AlD~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~-g~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARD----GRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WK-GKVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTT----CCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ET-TEEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCC----CceeEEEcCCCCccccccccccCCCCccEE--EC-CEEEEEccCCEEEEEECCCCC
Confidence 44667777788999999987 556655543321 01 11222 23 689999999999999999998
Q ss_pred EEEeecCC---CceeEEEecC--CCCCEEEEEE------CCCeEEEEECCCCccceeEecc--C----------------
Q 009380 317 FDLVYSSE---YAVFSLSQQP--NNVNTLYFGE------GQGGLNIWDVRSRKSATEWLLH--E---------------- 367 (536)
Q Consensus 317 ~~~~~~~~---~~i~~l~~~~--~~~~~l~~g~------~dg~i~i~d~~~~~~~~~~~~h--~---------------- 367 (536)
....+... .....+...| .+ ..+++++ .+|.|..||..+|+.+..+... .
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 221 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT 221 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred EeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccc
Confidence 76554432 1111111111 12 3566654 3689999999999987766521 0
Q ss_pred -------------CCeEEEEEecCCCCEEEEEeCCCc-------------------EEEEeCCCCCCCCCCcceee--cc
Q 009380 368 -------------ARINTIDFNPRNPNIMATSSTDGT-------------------ACIWDLRSMATDKPEPMKVL--SH 413 (536)
Q Consensus 368 -------------~~i~~i~~~p~~~~~l~s~s~dg~-------------------i~iwdl~~~~~~~~~~~~~~--~~ 413 (536)
.....+++.|++ .+++.++.++. |..||..+++ ..-... .|
T Consensus 222 ~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~----~~W~~~~~~~ 296 (689)
T 1yiq_A 222 WFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGE----YVWHYQTTPG 296 (689)
T ss_dssp CCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCC----EEEEEESSTT
T ss_pred cCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCc----eeEeeecCCc
Confidence 011257888866 57888877763 9999999975 222222 12
Q ss_pred c-------CceeEEEEccCCC---eEEEEeCCCcEEEEeCCCCCcceEEeccCC---------CCcee------------
Q 009380 414 K-------RAVHSAYFSPSGS---SLATTSFDDTIGIWSGVNFENTSMIHHNNQ---------TGRWI------------ 462 (536)
Q Consensus 414 ~-------~~v~~l~~sp~g~---~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~---------~~~~~------------ 462 (536)
. ..+.......+|+ .++.++.+|.++++|..+++.+........ .+..+
T Consensus 297 d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~ 376 (689)
T 1yiq_A 297 DAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNG 376 (689)
T ss_dssp CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSS
T ss_pred ccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCC
Confidence 1 1222222233565 788999999999999999987744322110 00000
Q ss_pred ---ee----------eEEEEcCCCCEEEEEcC---------------------------------------------CCc
Q 009380 463 ---SS----------FRAIWGWDDSCVFIGNM---------------------------------------------TRT 484 (536)
Q Consensus 463 ---~~----------~~~~~s~~g~~l~~gs~---------------------------------------------dg~ 484 (536)
.. -.++|+|+..+|++... +|.
T Consensus 377 ~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~ 456 (689)
T 1yiq_A 377 KRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK 456 (689)
T ss_dssp SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE
T ss_pred CeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee
Confidence 00 01467888777776522 377
Q ss_pred EEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 485 VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 485 I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
|..||+.+++.+.++..+... ....+.. .+.+++.|+.||.|+.||.+
T Consensus 457 l~A~D~~tG~~~W~~~~~~~~-~~g~~~t---agglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 457 LIAWDPVKQQAAWEVPYVTIF-NGGTLST---AGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp EEEEETTTTEEEEEEEESSSC-CCCEEEE---TTTEEEEECTTSEEEEEETT
T ss_pred EEEEECCCCCeEeEccCCCCc-cCccceE---CCCEEEEECCCCcEEEEECC
Confidence 999999999988887643211 1112222 35799999999999999964
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.17 E-value=4.4e-09 Score=113.07 Aligned_cols=244 Identities=11% Similarity=0.102 Sum_probs=156.5
Q ss_pred ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC--CCCEEEEEEec--CCCCEEEEEE------CCCeEEEEECCCCeE
Q 009380 248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH--LGPISGIVTQQ--YCLSKIFTSC------YDGLIRLMDAEKEVF 317 (536)
Q Consensus 248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h--~~~V~~l~~~~--~~~~~l~s~s------~dg~I~vwd~~~~~~ 317 (536)
+..|++++.|+.|..+|..+ ++.+..+... ......+...| .+ ..++.++ .+|.|..||..+++.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~T----G~~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~ 195 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKT----GQRAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKE 195 (689)
T ss_dssp TTEEEEECTTSEEEEEETTT----CCEEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred CCEEEEEccCCEEEEEECCC----CCEeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcE
Confidence 45788888999999999988 5555554431 11001111111 12 4555554 378999999999987
Q ss_pred EEeecCC--------------------------------CceeEEEecCCCCCEEEEEECCCe-----------------
Q 009380 318 DLVYSSE--------------------------------YAVFSLSQQPNNVNTLYFGEGQGG----------------- 348 (536)
Q Consensus 318 ~~~~~~~--------------------------------~~i~~l~~~~~~~~~l~~g~~dg~----------------- 348 (536)
...+... .....+++.|+. .++++++.++.
T Consensus 196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~ 274 (689)
T 1yiq_A 196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFL 274 (689)
T ss_dssp EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTT
T ss_pred EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceee
Confidence 6544310 011257788877 78999988764
Q ss_pred --EEEEECCCCccceeEec--cC-------CCeEEEEEecCCC--CEEEEEeCCCcEEEEeCCCCCCCCCC-----ccee
Q 009380 349 --LNIWDVRSRKSATEWLL--HE-------ARINTIDFNPRNP--NIMATSSTDGTACIWDLRSMATDKPE-----PMKV 410 (536)
Q Consensus 349 --i~i~d~~~~~~~~~~~~--h~-------~~i~~i~~~p~~~--~~l~s~s~dg~i~iwdl~~~~~~~~~-----~~~~ 410 (536)
|..+|..+|+.+..++. |. ..+.......++. ..++.++.+|.++++|..+++..... ....
T Consensus 275 ~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~ 354 (689)
T 1yiq_A 275 SSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTK 354 (689)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred eeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccc
Confidence 99999999999877763 22 1122222222331 27888999999999999987521000 0000
Q ss_pred ------------------e-cc-----------cCceeEEEEccCCCeEEEEeC--------------------------
Q 009380 411 ------------------L-SH-----------KRAVHSAYFSPSGSSLATTSF-------------------------- 434 (536)
Q Consensus 411 ------------------~-~~-----------~~~v~~l~~sp~g~~l~t~s~-------------------------- 434 (536)
. .. ...-..++|+|+..++++...
T Consensus 355 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (689)
T 1yiq_A 355 GMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGL 434 (689)
T ss_dssp EEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSS
T ss_pred ccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCc
Confidence 0 00 001123788998777776532
Q ss_pred -------------------CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380 435 -------------------DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS 495 (536)
Q Consensus 435 -------------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~ 495 (536)
+|.|..||+.+++.+..+........ ..+...+.++++|+.|+.|+.||..+|+.
T Consensus 435 ~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~------g~~~tagglvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 435 RTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNG------GTLSTAGNLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp EECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCC------CEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccC------ccceECCCEEEEECCCCcEEEEECCCCcc
Confidence 37799999999988877765432111 22345678999999999999999999999
Q ss_pred ceeccCCc
Q 009380 496 VATLQSPY 503 (536)
Q Consensus 496 ~~~l~~~~ 503 (536)
+.++..+.
T Consensus 509 lw~~~~~~ 516 (689)
T 1yiq_A 509 LWEQPAAS 516 (689)
T ss_dssp EEEEECSS
T ss_pred ceeeeCCC
Confidence 98887543
No 230
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.16 E-value=2.8e-09 Score=103.70 Aligned_cols=261 Identities=13% Similarity=0.131 Sum_probs=160.2
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE 315 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~ 315 (536)
.+.++...+ ++. |..++.+ |..||. + +..+..+..+........+. + ..|+.++.++.|..+|.. +
T Consensus 61 ~~~~~~~~~--~g~-l~v~t~~--l~~~d~-~----g~~~~~~~~~~~~~~~~~~~--~-~~l~v~t~~~~l~~~d~~-g 126 (330)
T 3hxj_A 61 IECRPSIGK--DGT-IYFGSDK--VYAINP-D----GTEKWRFDTKKAIVSDFTIF--E-DILYVTSMDGHLYAINTD-G 126 (330)
T ss_dssp EEECCEETT--TTE-ECCSSCE--EEEECC-C----GGGGGGSCC-----CCEEEE--T-TEEEEECTTSEEEEECTT-S
T ss_pred cccceEEec--CCc-EEEecCc--EEEECC-C----CcEEEEEECCCCcccCceEE--C-CEEEEEecCCEEEEEcCC-C
Confidence 456666655 554 4455544 888875 3 33333332222223333333 3 678889899999999998 5
Q ss_pred eEEEeec-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEE
Q 009380 316 VFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACI 394 (536)
Q Consensus 316 ~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~i 394 (536)
....... ....+.++...+++ .+++++.++.|..||.. ++.+..+......+.++.+.+++ . +..++ +.|..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g-~-l~v~t--~~l~~ 199 (330)
T 3hxj_A 127 TEKWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG-T-IYFGS--DKVYA 199 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-C-EEEES--SSEEE
T ss_pred CEEEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-E-EEEEe--CEEEE
Confidence 5444333 33445666776665 47778888999999998 77776766666677778887666 3 44444 78999
Q ss_pred EeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC
Q 009380 395 WDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS 474 (536)
Q Consensus 395 wdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 474 (536)
|| .+++ ...........+.++..+++|. |..++.++.|..+|. +++....+...... ... +...+++
T Consensus 200 ~d-~~g~----~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~---~~~--~~~~~~g- 266 (330)
T 3hxj_A 200 IN-PDGT----EKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRI---ESS--PVIGNTD- 266 (330)
T ss_dssp EC-TTSC----EEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCC---CSC--CEECTTS-
T ss_pred EC-CCCc----EEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCc---ccc--ceEcCCC-
Confidence 99 5542 2223333446688888988875 666777888999974 45544444322211 111 2234444
Q ss_pred EEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 475 CVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 475 ~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
.|++++.++.|..+|. +++.+..+..... .+ ..+...+ + ..|..++.+|.+++...
T Consensus 267 ~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~-~~-~~~~~d~-~-g~l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 267 TIYFGSYDGHLYAINP-DGTEKWNFETGSW-II-ATPVIDE-N-GTIYFGTRNGKFYALFN 322 (330)
T ss_dssp CEEEECTTCEEEEECT-TSCEEEEEECSSC-CC-SCCEECT-T-CCEEEECTTSCEEEEEC
T ss_pred eEEEecCCCCEEEECC-CCcEEEEEEcCCc-cc-cceEEcC-C-CEEEEEcCCCeEEEEec
Confidence 6777888888999996 6666655543221 11 2233333 3 56778999999988754
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.15 E-value=3.9e-09 Score=113.20 Aligned_cols=270 Identities=10% Similarity=0.150 Sum_probs=171.3
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC-----------CEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG-----------PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF 317 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~-----------~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~ 317 (536)
..|++++.++.|.-+|..+ ++.+..+..... ....+.+ .+ ..|+.++.|+.|..+|..+++.
T Consensus 78 g~vyv~~~~~~v~AlD~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~-~~v~v~~~dg~l~alD~~tG~~ 150 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRT----GNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WK-GKVYVGAWDGRLIALDAATGKE 150 (677)
T ss_dssp TEEEEECGGGCEEEEETTT----TEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ET-TEEEEECTTSEEEEEETTTCCE
T ss_pred CEEEEECCCCeEEEEECCC----CcEEEEEcCCCCccccccccccCCCCCceE--EC-CEEEEEcCCCEEEEEECCCCCE
Confidence 4566667778888888887 555555443221 0112333 34 6899999999999999999987
Q ss_pred EEeecCC------CceeEEEecCCCCCEEEEEEC------CCeEEEEECCCCccceeEeccCCC----------------
Q 009380 318 DLVYSSE------YAVFSLSQQPNNVNTLYFGEG------QGGLNIWDVRSRKSATEWLLHEAR---------------- 369 (536)
Q Consensus 318 ~~~~~~~------~~i~~l~~~~~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~~~---------------- 369 (536)
...+... ..+.+.-...+ ..+++++. +|.|+.||..+++.+..+......
T Consensus 151 ~W~~~~~~~~~~~~~~~~~p~v~~--~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~ 228 (677)
T 1kb0_A 151 VWHQNTFEGQKGSLTITGAPRVFK--GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART 228 (677)
T ss_dssp EEEEETTTTCCSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred EeeecCCcCcCcCcccccCcEEEC--CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence 6655432 12221111112 46666654 689999999999988776532211
Q ss_pred ----------------eEEEEEecCCCCEEEEEeCCC-------------------cEEEEeCCCCCCCCCCcceee--c
Q 009380 370 ----------------INTIDFNPRNPNIMATSSTDG-------------------TACIWDLRSMATDKPEPMKVL--S 412 (536)
Q Consensus 370 ----------------i~~i~~~p~~~~~l~s~s~dg-------------------~i~iwdl~~~~~~~~~~~~~~--~ 412 (536)
...+++.|++ .+++.++.++ .|..+|..+++ ..-... .
T Consensus 229 w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~----~~W~~~~~~ 303 (677)
T 1kb0_A 229 WDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK----YKWHYQETP 303 (677)
T ss_dssp SCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC----EEEEEESST
T ss_pred ccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC----EEEEEecCC
Confidence 1357888876 5777776554 49999999875 222221 1
Q ss_pred cc-------CceeEEEEccCC---CeEEEEeCCCcEEEEeCCCCCcceEEeccC--------CCCceee-----------
Q 009380 413 HK-------RAVHSAYFSPSG---SSLATTSFDDTIGIWSGVNFENTSMIHHNN--------QTGRWIS----------- 463 (536)
Q Consensus 413 ~~-------~~v~~l~~sp~g---~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~--------~~~~~~~----------- 463 (536)
|. ....-+....+| ..+++++.+|.|+++|..+++.+..+.... ..++.+.
T Consensus 304 ~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 383 (677)
T 1kb0_A 304 GDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQ 383 (677)
T ss_dssp TCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCE
T ss_pred CcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCcc
Confidence 21 122233344477 689999999999999999998876664321 1111110
Q ss_pred -e----------eEEEEcCCCCEEEEEcC-------------------------------------------CCcEEEEc
Q 009380 464 -S----------FRAIWGWDDSCVFIGNM-------------------------------------------TRTVEVIS 489 (536)
Q Consensus 464 -~----------~~~~~s~~g~~l~~gs~-------------------------------------------dg~I~v~d 489 (536)
. -.++++|++.++++... .+.|..||
T Consensus 384 ~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D 463 (677)
T 1kb0_A 384 DAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWD 463 (677)
T ss_dssp ECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEE
T ss_pred EECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEe
Confidence 0 02567888888877543 27799999
Q ss_pred CCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 490 PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 490 ~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
+.+++.+.++..... .....+.. .+.+++.++.||.|++||.+
T Consensus 464 ~~tG~~~W~~~~~~~-~~~g~~~~---~g~~v~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 464 PVAQKAAWSVEHVSP-WNGGTLTT---AGNVVFQGTADGRLVAYHAA 506 (677)
T ss_dssp TTTTEEEEEEEESSS-CCCCEEEE---TTTEEEEECTTSEEEEEETT
T ss_pred CCCCcEEeecCCCCC-CcCcceEe---CCCEEEEECCCCcEEEEECC
Confidence 999998887764221 11112222 35788889999999999964
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.11 E-value=2.5e-11 Score=120.72 Aligned_cols=186 Identities=13% Similarity=0.090 Sum_probs=111.1
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCC-CeE-EE
Q 009380 296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA-RIN-TI 373 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~-~i~-~i 373 (536)
..+++++.||.|+.||..+++....+.. ..+.+..+..++ .++++++.||.|+.||..+++.+..+..+.. .+. +.
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp 87 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASP 87 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCS
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCc
Confidence 7899999999999999999988766655 556665566665 5777778999999999999988766653311 110 01
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380 374 DFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH 453 (536)
Q Consensus 374 ~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~ 453 (536)
.+. .+ ..+++++.|+.|+.||..+++. ......+. ...++|++..+++++.|+.|+.||..+++....+.
T Consensus 88 ~~~-~~-~~v~~g~~dg~v~a~D~~tG~~----~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 88 CRS-SD-GILYMGKKQDIWYVIDLLTGEK----QQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp CC-------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred eEe-cC-CEEEEEeCCCEEEEEECCCCcE----EEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 111 23 3677788899999999998752 22222221 24566788889999999999999999998877664
Q ss_pred ccCCCCceeeeeEEEEcCCC---CEEEEEcCCCcEEEEcCCccccceecc
Q 009380 454 HNNQTGRWISSFRAIWGWDD---SCVFIGNMTRTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 454 ~~~~~~~~~~~~~~~~s~~g---~~l~~gs~dg~I~v~d~~~~~~~~~l~ 500 (536)
.... .. ..++.+. ..+++++.++.|..||..+++.+.++.
T Consensus 158 ~~~~-----~~--~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 158 YFDY-----AA--SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEE-----CC--BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred cccc-----cC--ccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 3211 11 2233322 467788899999999999998887765
No 233
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.10 E-value=3.1e-09 Score=104.41 Aligned_cols=242 Identities=8% Similarity=-0.031 Sum_probs=152.1
Q ss_pred cceeeeecCCCCcccccccc---cccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeC----
Q 009380 184 NGFKTCKDEGLGVGSCDLIK---GVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSK---- 256 (536)
Q Consensus 184 ~~v~~~~~s~~~~~l~~~~~---~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~---- 256 (536)
.....+.++++|++++.... +..+++.-. +|.+.-|-- .. .....+-..+..++++| ++.++++...
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~-~~--~~~~~~~~~p~gv~~d~--~g~L~v~D~g~~~~ 90 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDGLIPFPP-QS--GNAIITFDTVLGIKSDG--NGIVWMLDNGNQSK 90 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTEEEESCC-CC--SSCCCCCSCEEEEEECS--SSEEEEEECHHHHT
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCCeecCCC-cc--cCcccceeEeeEEEEcC--CCcEEEEcCCCCcC
Confidence 57888999999998876421 101222222 333332210 00 01123456899999999 8887776544
Q ss_pred -CCcEEEEECCCCCCCCCceEEecc------CCCCEEEEEEecCCCCEEEEEE---CCCeEEEEECCCCeEEEeecC---
Q 009380 257 -LGNITFWNLDSQQDEDNGIYLFRT------HLGPISGIVTQQYCLSKIFTSC---YDGLIRLMDAEKEVFDLVYSS--- 323 (536)
Q Consensus 257 -dg~v~iwd~~~~~~~~~~~~~~~~------h~~~V~~l~~~~~~~~~l~s~s---~dg~I~vwd~~~~~~~~~~~~--- 323 (536)
++.|.+||+.+ +..+..+.. +...+..+++++++...+++-. .++.|.+||+.++........
T Consensus 91 ~~~~i~~~d~~t----g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 91 SVPKLVAWDTLN----NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp SCCEEEEEETTT----TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred CCCeEEEEECCC----CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 57899999986 444444432 2345689999987524445544 678999999987765443311
Q ss_pred ---------------------------CCceeEEEecCCCCCEEEEEECCC-eEEEEECC---CCc-----cce--eEec
Q 009380 324 ---------------------------EYAVFSLSQQPNNVNTLYFGEGQG-GLNIWDVR---SRK-----SAT--EWLL 365 (536)
Q Consensus 324 ---------------------------~~~i~~l~~~~~~~~~l~~g~~dg-~i~i~d~~---~~~-----~~~--~~~~ 365 (536)
...+..|+|+|++ +.|+++...+ .|..++.. .+. ... ...+
T Consensus 167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 245 (343)
T 2qe8_A 167 IAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS 245 (343)
T ss_dssp TSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE
T ss_pred ccccccceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc
Confidence 1235789999998 7788877665 56666532 111 011 1223
Q ss_pred cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--cccCceeEEEEccCCCeEEEEeCCCcEEEEe
Q 009380 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 442 (536)
Q Consensus 366 h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd 442 (536)
+......+++.++| +++++...++.|.+||..+++ ...+. .+...+.+++|.++|.++++.+..+.+.+|.
T Consensus 246 ~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~-----~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 246 EKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRA-----YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTE-----EEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred cCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCC-----EEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 44566789999987 788888888999999984432 22222 2345688999999998888877655554443
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.09 E-value=5.1e-09 Score=107.30 Aligned_cols=241 Identities=11% Similarity=0.096 Sum_probs=160.6
Q ss_pred CccEEEEEeCC-CcEEEEECCCCCCCCCceEEec-cCCCCEEEEEE-e-cCCCCEEEEEE------------------CC
Q 009380 247 DVRMVVAGSKL-GNITFWNLDSQQDEDNGIYLFR-THLGPISGIVT-Q-QYCLSKIFTSC------------------YD 304 (536)
Q Consensus 247 ~~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~-~-~~~~~~l~s~s------------------~d 304 (536)
||++|+...++ +.|.+.|+.+ .++...+. .....+..+++ . |++ .++++++ ++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t----~~~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~ 174 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDV----MKCDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYV 174 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTT----TEEEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred CCCEEEEEcCCCCEEEEEECCC----ceEeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccC
Confidence 67777776664 5699999997 55555332 22345788888 4 888 8888884 35
Q ss_pred CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC-------------------------------------
Q 009380 305 GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG------------------------------------- 347 (536)
Q Consensus 305 g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg------------------------------------- 347 (536)
+.+.+.|..+.+......-......++++|++ .++++.+.+.
T Consensus 175 ~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 175 NVFTAVDADKWEVAWQVLVSGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp EEEEEEETTTTEEEEEEEESSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred ceEEEEECCCCeEEEEEEeCCCccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence 68999999998776655544456778899988 6777777543
Q ss_pred -eEEEEECCC--Ccc-ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCC------CCC-CCcceeecccCc
Q 009380 348 -GLNIWDVRS--RKS-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMA------TDK-PEPMKVLSHKRA 416 (536)
Q Consensus 348 -~i~i~d~~~--~~~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~------~~~-~~~~~~~~~~~~ 416 (536)
.|.+.|.++ ++. +..+. -.....++.++|||..+++++-.+.+|.++|+.+.+ ... ..+.....-...
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g 332 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG 332 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC
T ss_pred CcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC
Confidence 377777776 444 34443 234567899999997677777788999999998631 000 011222234567
Q ss_pred eeEEEEccCCCeEEEEeCCCcEEEEeCCC----------CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC---CC
Q 009380 417 VHSAYFSPSGSSLATTSFDDTIGIWSGVN----------FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM---TR 483 (536)
Q Consensus 417 v~~l~~sp~g~~l~t~s~dg~I~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~---dg 483 (536)
...++|+|+|...++.-.|++|.+||+.. .+.+..+....+.++.........++||++|++.+. |+
T Consensus 333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr 412 (595)
T 1fwx_A 333 PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR 412 (595)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred cceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc
Confidence 88999999995445566899999999876 334444443333233223233346899999999754 44
Q ss_pred cE----------EEEcCCccc
Q 009380 484 TV----------EVISPAQRR 494 (536)
Q Consensus 484 ~I----------~v~d~~~~~ 494 (536)
.+ .++|+.+++
T Consensus 413 ~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 413 FLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp SCCCCSSCCEEEEEEECSSSS
T ss_pred cccCCCCCCCcceEEEcCCCc
Confidence 31 788886553
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.07 E-value=1.7e-08 Score=100.01 Aligned_cols=231 Identities=13% Similarity=0.109 Sum_probs=144.7
Q ss_pred CccEEE-EEeCCCcEEEEECCCCCCCCCceEEec------cCC-CCEEEEEEecCCCCEEEEEECC------CeEEEEEC
Q 009380 247 DVRMVV-AGSKLGNITFWNLDSQQDEDNGIYLFR------THL-GPISGIVTQQYCLSKIFTSCYD------GLIRLMDA 312 (536)
Q Consensus 247 ~~~~l~-tg~~dg~v~iwd~~~~~~~~~~~~~~~------~h~-~~V~~l~~~~~~~~~l~s~s~d------g~I~vwd~ 312 (536)
++++|+ .|..++.|.|+|+.+.....+....+. ... ..-..+.+.|++ +++++..+ |.|.++|.
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECT
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEEC
Confidence 666655 466678999999976433234444442 111 134567788987 66666655 78999999
Q ss_pred CCCeEEEeecCC----CceeEEEecCCCCCEEEEEE-------------------CCCeEEEEECCCCccceeEecc-C-
Q 009380 313 EKEVFDLVYSSE----YAVFSLSQQPNNVNTLYFGE-------------------GQGGLNIWDVRSRKSATEWLLH-E- 367 (536)
Q Consensus 313 ~~~~~~~~~~~~----~~i~~l~~~~~~~~~l~~g~-------------------~dg~i~i~d~~~~~~~~~~~~h-~- 367 (536)
.+.+........ .--..+-|+|++ +.+++.. ...+|.+||+.+++.+.++... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 988776655422 223457889998 7777774 3679999999998877777642 1
Q ss_pred CCeEEEEE--ecCCCCEEEEEe-----CCCcEEEEeCCCCCCCCCCcceeec----------------ccCceeEEEEcc
Q 009380 368 ARINTIDF--NPRNPNIMATSS-----TDGTACIWDLRSMATDKPEPMKVLS----------------HKRAVHSAYFSP 424 (536)
Q Consensus 368 ~~i~~i~~--~p~~~~~l~s~s-----~dg~i~iwdl~~~~~~~~~~~~~~~----------------~~~~v~~l~~sp 424 (536)
.....|.| +|++...++++. .+++|.+|....+.-.....+.+.. .......|.++|
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 23445555 998865556665 6778877665432100000000000 024578899999
Q ss_pred CCCeEEEEeC-CCcEEEEeCCCCCc---ceEEeccCC-------CCcee--eeeEEEEcCCCCEEEEEc
Q 009380 425 SGSSLATTSF-DDTIGIWSGVNFEN---TSMIHHNNQ-------TGRWI--SSFRAIWGWDDSCVFIGN 480 (536)
Q Consensus 425 ~g~~l~t~s~-dg~I~iwd~~~~~~---~~~~~~~~~-------~~~~~--~~~~~~~s~~g~~l~~gs 480 (536)
||++|+++.. .+.|.+||+.+... +..+..... .+..+ ..-.+.++|||++|++++
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999988875 67899999864432 223322110 00100 112266899999999998
No 236
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.99 E-value=6.2e-07 Score=84.36 Aligned_cols=238 Identities=8% Similarity=-0.019 Sum_probs=143.0
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCC-CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC-CCc
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDED-NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS-EYA 326 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~-~~~ 326 (536)
.+|+.+.. +.|+.+++....... .....+......+.+++|++++..++++-..++.|.++++.++....+... -..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 45555553 478888887532100 001112222245789999997624444445578999999987654444432 257
Q ss_pred eeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeC--CCcEEEEeCCCCCCC
Q 009380 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSST--DGTACIWDLRSMATD 403 (536)
Q Consensus 327 i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~--dg~i~iwdl~~~~~~ 403 (536)
...+++.+++.+++++-...+.|.++++.... ...+. ........++++|++..++++... .+.|..+++....
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-- 157 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-- 157 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC--
Confidence 78999999763444444556899999986433 22332 222567899999976555555443 4688888876421
Q ss_pred CCCcceee-cccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc-
Q 009380 404 KPEPMKVL-SHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN- 480 (536)
Q Consensus 404 ~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs- 480 (536)
...+. ..-.....++++|++..|+.+. ..+.|.++|.........+. ..... .. ++. ++..|+++.
T Consensus 158 ---~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---~~~~P-~g--i~~--d~~~lyva~~ 226 (267)
T 1npe_A 158 ---RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---GLQYP-FA--VTS--YGKNLYYTDW 226 (267)
T ss_dssp ---CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---CCCSE-EE--EEE--ETTEEEEEET
T ss_pred ---cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec---CCCCc-eE--EEE--eCCEEEEEEC
Confidence 11111 2234678999999876665554 56789999987543222222 11111 12 223 344555444
Q ss_pred CCCcEEEEcCCccccceeccC
Q 009380 481 MTRTVEVISPAQRRSVATLQS 501 (536)
Q Consensus 481 ~dg~I~v~d~~~~~~~~~l~~ 501 (536)
.++.|.++|..+++.+..+..
T Consensus 227 ~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 227 KTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp TTTEEEEEETTTTEEEEEECC
T ss_pred CCCeEEEEeCCCCCceEEEcc
Confidence 568899999999888877754
No 237
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.97 E-value=9.1e-07 Score=83.22 Aligned_cols=205 Identities=11% Similarity=0.039 Sum_probs=131.6
Q ss_pred CceEEEEEEecCCcc-EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 235 GRITQMKFLPCSDVR-MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
..+..++|+| ++. ++++-..++.|..+++.. ......+.........+++.+++..++++-...+.|.++++.
T Consensus 36 ~~~~gi~~d~--~~~~ly~~d~~~~~I~~~~~~g----~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~ 109 (267)
T 1npe_A 36 KVIIGLAFDC--VDKVVYWTDISEPSIGRASLHG----GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD 109 (267)
T ss_dssp EEEEEEEEET--TTTEEEEEETTTTEEEEEESSS----CCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcEEEEEEec--CCCEEEEEECCCCEEEEEecCC----CCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC
Confidence 4578999998 554 445555678999999875 222222322335678999999762444454557899999997
Q ss_pred CCeEEEeecCC-CceeEEEecCCCCCEEEEEEC---CCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeC
Q 009380 314 KEVFDLVYSSE-YAVFSLSQQPNNVNTLYFGEG---QGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSST 388 (536)
Q Consensus 314 ~~~~~~~~~~~-~~i~~l~~~~~~~~~l~~g~~---dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~ 388 (536)
......+.... .....++++|++ ..|+++.. .+.|..+++.. .....+. ........++++|++..++++-..
T Consensus 110 g~~~~~~~~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 110 GTQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp SCSCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETT
T ss_pred CCCEEEEEECCCCCccEEEEeeCC-CEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECC
Confidence 65433333322 567899999976 45555554 36888888753 3333332 233467899999987666677667
Q ss_pred CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380 389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH 453 (536)
Q Consensus 389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~ 453 (536)
.+.|.++|+.... ...+.........++.. .+.++++....+.|.++|..+++....+.
T Consensus 188 ~~~I~~~~~~g~~-----~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 188 THRAECLNPAQPG-----RRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp TTEEEEEETTEEE-----EEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEecCCCc-----eEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 7899999987531 11222222334566654 34444444456889999998887777664
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.91 E-value=2.3e-07 Score=86.33 Aligned_cols=206 Identities=10% Similarity=0.021 Sum_probs=136.3
Q ss_pred EEeecCCC--ceeEEEecCCCCCEEEEEEC---CCeEEEEECCCCccceeEeccC-CCeEEEEEecCCCCEEEEEeCCCc
Q 009380 318 DLVYSSEY--AVFSLSQQPNNVNTLYFGEG---QGGLNIWDVRSRKSATEWLLHE-ARINTIDFNPRNPNIMATSSTDGT 391 (536)
Q Consensus 318 ~~~~~~~~--~i~~l~~~~~~~~~l~~g~~---dg~i~i~d~~~~~~~~~~~~h~-~~i~~i~~~p~~~~~l~s~s~dg~ 391 (536)
...+.|.. ....+.|++++ .|+.++. ++.|.++|+.+++.+..+.... .....+++. +..+.++.-.++.
T Consensus 12 v~~~p~~~~~f~~Gl~~~~dg--~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 12 LNEFPHDPYAFTQGLVYAEND--TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEECCTTCCEEEEEECSTT--EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSE
T ss_pred EEEEECCCCCCcccEEEeCCC--eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCE
Confidence 34445553 35789999875 5665543 5799999999999988876322 223356665 4456666667899
Q ss_pred EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCcee-eeeEEEEc
Q 009380 392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWI-SSFRAIWG 470 (536)
Q Consensus 392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~s 470 (536)
+.++|..+.+ ........ .-....++++|+.++++..++.|.++|..+.+....+..... +..+ ....+.|.
T Consensus 88 v~viD~~t~~-----v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~~~~nele~~ 160 (266)
T 2iwa_A 88 GFIYDRRTLS-----NIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRVIRLNELEYI 160 (266)
T ss_dssp EEEEETTTTE-----EEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE
T ss_pred EEEEECCCCc-----EEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-CcccccceeEEEE
Confidence 9999998853 22323222 112234566788788877889999999999888777753321 1111 11224456
Q ss_pred CCCCEEEEEcCCCcEEEEcCCccccceeccCCc-----------eeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY-----------ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 471 ~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~-----------~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
+|..++....++.|.+.|..+++.+..+.... ...+...++++|.....++++...+.|.+-++
T Consensus 161 -dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 161 -NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp -TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred -CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 66544444457899999999999988886421 11345678999865567888888888887664
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.89 E-value=2.4e-07 Score=94.98 Aligned_cols=224 Identities=11% Similarity=0.084 Sum_probs=145.5
Q ss_pred CCCCEEEEEEC-CCeEEEEECCCCeEEEee--cCCCceeEEEe-c-CCCCCEEEEEE------------------CCCeE
Q 009380 293 YCLSKIFTSCY-DGLIRLMDAEKEVFDLVY--SSEYAVFSLSQ-Q-PNNVNTLYFGE------------------GQGGL 349 (536)
Q Consensus 293 ~~~~~l~s~s~-dg~I~vwd~~~~~~~~~~--~~~~~i~~l~~-~-~~~~~~l~~g~------------------~dg~i 349 (536)
|| .+++.+.. ++.|.+.|+.+.++..+. .....+..+++ . |++ .++++++ .++.+
T Consensus 100 DG-~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DG-RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EE-EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CC-CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccCceE
Confidence 77 66665554 567999999998876643 33456888887 4 787 6777774 24589
Q ss_pred EEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC--------------------------------------c
Q 009380 350 NIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG--------------------------------------T 391 (536)
Q Consensus 350 ~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg--------------------------------------~ 391 (536)
.++|..+.+.+.++.--. ....++++|+|. ++++.+.+. .
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk-~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCC-EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 999999988877776323 456688999884 555555332 4
Q ss_pred EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCc--------ceEEeccCCCCcee
Q 009380 392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFEN--------TSMIHHNNQTGRWI 462 (536)
Q Consensus 392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~--------~~~~~~~~~~~~~~ 462 (536)
|.|.|.++.+ .........-.....++.++|||+++++++ .+++|.++|+.+.+. ...+......+.
T Consensus 256 V~VID~~~~~--~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~-- 331 (595)
T 1fwx_A 256 VKVVDGRKEA--SSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL-- 331 (595)
T ss_dssp EEEEECSGGG--CCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS--
T ss_pred EEEEeCcccC--CceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC--
Confidence 7777777621 012133334445778899999999887776 678999999985421 111111112221
Q ss_pred eeeEEEEcCCCCEEEEEcCCCcEEEEcCCc----------cccceeccCCceee-e--eeeEeecCCCCCEEEEEc
Q 009380 463 SSFRAIWGWDDSCVFIGNMTRTVEVISPAQ----------RRSVATLQSPYISA-I--PCRFHAHPHQVGTLAGAT 525 (536)
Q Consensus 463 ~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~----------~~~~~~l~~~~~~~-~--~~~~~~~p~~~~~lasgs 525 (536)
..+..+|+++|...++.-.|+.|.+||+.. .+.+.++..+.... . ......+| ||.+|++++
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~N 406 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLS 406 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEE
T ss_pred CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEcC
Confidence 233477999994455667789999999987 45566666543321 1 11234466 678888875
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.88 E-value=3.2e-07 Score=98.26 Aligned_cols=269 Identities=12% Similarity=0.183 Sum_probs=163.1
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC----------CE-EEEEEecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG----------PI-SGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF 317 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~----------~V-~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~ 317 (536)
..|++++.++.|.-+|..+ ++.+..+..... .+ ..+.+ .+ ..|+.++.|+.|..+|..+++.
T Consensus 67 g~vyv~~~~~~v~AlD~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~v~v~~~dg~l~alD~~tG~~ 139 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAAS----GKELWRYDPEVAKVKARTSCCDAVNRGVAL--WG-DKVYVGTLDGRLIALDAKTGKA 139 (668)
T ss_dssp TEEEEEEGGGEEEEEETTT----CCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EB-TEEEEECTTSEEEEEETTTCCE
T ss_pred CEEEEECCCCeEEEEECCC----ChhceEECCCCCccccccccccCCccceEE--EC-CEEEEEcCCCEEEEEECCCCCE
Confidence 4566666778888888877 455555433211 00 11223 23 6888899999999999999987
Q ss_pred EEeecCC-----CceeE-EEecCCCCCEEEEEEC------CCeEEEEECCCCccceeEeccC------------------
Q 009380 318 DLVYSSE-----YAVFS-LSQQPNNVNTLYFGEG------QGGLNIWDVRSRKSATEWLLHE------------------ 367 (536)
Q Consensus 318 ~~~~~~~-----~~i~~-l~~~~~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~------------------ 367 (536)
...+... ..+.+ ..+. + ..++++.. +|.|..+|..+|+.+..+....
T Consensus 140 ~W~~~~~~~~~~~~~~~~P~v~-~--~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 216 (668)
T 1kv9_A 140 IWSQQTTDPAKPYSITGAPRVV-K--GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKT 216 (668)
T ss_dssp EEEEECSCTTSSCBCCSCCEEE-T--TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred eeeeccCCCCCcceecCCCEEE-C--CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccccc
Confidence 6554331 11111 0111 2 36666654 5899999999999887765210
Q ss_pred -------------CCeEEEEEecCCCCEEEEEeCCC-------------------cEEEEeCCCCCCCCCCcceee--cc
Q 009380 368 -------------ARINTIDFNPRNPNIMATSSTDG-------------------TACIWDLRSMATDKPEPMKVL--SH 413 (536)
Q Consensus 368 -------------~~i~~i~~~p~~~~~l~s~s~dg-------------------~i~iwdl~~~~~~~~~~~~~~--~~ 413 (536)
.....+++.|+. .+++.++.++ .|..+|..+++ ..-... .|
T Consensus 217 ~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~----~~W~~~~~~~ 291 (668)
T 1kv9_A 217 WQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK----LAWHYQVTPG 291 (668)
T ss_dssp CCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC----EEEEEESSTT
T ss_pred CCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCc----eeeEeecCCC
Confidence 011246788866 5777777665 39999999875 222222 12
Q ss_pred c-------CceeEEEEccCCC---eEEEEeCCCcEEEEeCCCCCcceEEeccC---------CCCceee-----------
Q 009380 414 K-------RAVHSAYFSPSGS---SLATTSFDDTIGIWSGVNFENTSMIHHNN---------QTGRWIS----------- 463 (536)
Q Consensus 414 ~-------~~v~~l~~sp~g~---~l~t~s~dg~I~iwd~~~~~~~~~~~~~~---------~~~~~~~----------- 463 (536)
. .+.....+..+|+ .++.++.+|.++++|..+++.+....... ..+..+.
T Consensus 292 ~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~ 371 (668)
T 1kv9_A 292 DSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPI 371 (668)
T ss_dssp CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCE
T ss_pred ccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCee
Confidence 2 2233233334665 68899999999999999998774432211 0111100
Q ss_pred -e----------eEEEEcCCCCEEEEE------------------------------------cCCCcEEEEcCCccccc
Q 009380 464 -S----------FRAIWGWDDSCVFIG------------------------------------NMTRTVEVISPAQRRSV 496 (536)
Q Consensus 464 -~----------~~~~~s~~g~~l~~g------------------------------------s~dg~I~v~d~~~~~~~ 496 (536)
. -.++++|+...+++. ..+|.|..||..+++.+
T Consensus 372 ~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~ 451 (668)
T 1kv9_A 372 VMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAA 451 (668)
T ss_dssp EESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEE
T ss_pred EECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEE
Confidence 0 014566766665542 13478999999999988
Q ss_pred eeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 497 ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 497 ~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
.++..+... ....+.. .+.+|+.++.||.|++||.+
T Consensus 452 W~~~~~~~~-~~~~~~t---~gg~vf~g~~dg~l~a~d~~ 487 (668)
T 1kv9_A 452 WKVPYPTHW-NGGTLST---AGNLVFQGTAAGQMHAYSAD 487 (668)
T ss_dssp EEEEESSSC-CCCEEEE---TTTEEEEECTTSEEEEEETT
T ss_pred EEccCCCCC-cCceeEe---CCCEEEEECCcccchhhhhh
Confidence 776543211 1112222 35789999999999999863
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.85 E-value=5e-08 Score=94.72 Aligned_cols=251 Identities=10% Similarity=0.047 Sum_probs=152.2
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC-Cce
Q 009380 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE-YAV 327 (536)
Q Consensus 249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~-~~i 327 (536)
..|..++.++.|..|| .+ +.....+..+...+.++...+++ .|+.++.+ |..+|. ++.....+... ...
T Consensus 31 g~l~v~t~~~~l~~~d-~~----g~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~ 100 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TD----GSVKWFFKSGEIIECRPSIGKDG--TIYFGSDK--VYAINP-DGTEKWRFDTKKAIV 100 (330)
T ss_dssp SCEECSSTTTTTEEEC-TT----SCEEESSCGGGEEEECCEETTTT--EECCSSCE--EEEECC-CGGGGGGSCC-----
T ss_pred CeEEEEcCCCEEEEEC-CC----CcEEEEEecCCCcccceEEecCC--cEEEecCc--EEEECC-CCcEEEEEECCCCcc
Confidence 3566777788899999 65 44444444444445666666654 56666555 888886 44332222221 122
Q ss_pred eEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380 328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407 (536)
Q Consensus 328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~ 407 (536)
....+. + ..+++++.++.|..+|.. ++.......+...+.++...+++ .+..++.++.|..||.. ++ ..
T Consensus 101 ~~~~~~-~--~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~----~~ 169 (330)
T 3hxj_A 101 SDFTIF-E--DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GT----EK 169 (330)
T ss_dssp CCEEEE-T--TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SC----EE
T ss_pred cCceEE-C--CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CC----Ee
Confidence 233333 3 578889999999999988 77766666555666777777655 36667778999999987 43 22
Q ss_pred ceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEE
Q 009380 408 MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEV 487 (536)
Q Consensus 408 ~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v 487 (536)
.........+.++.+.+++.+++ ++ +.|..|| .+++......... ..+.. +...++| .|.+++.++.|..
T Consensus 170 ~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~---~~~~~--~~~~~~g-~l~v~t~~~gl~~ 239 (330)
T 3hxj_A 170 WRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGY---WTVTR--PAISEDG-TIYVTSLDGHLYA 239 (330)
T ss_dssp EEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSS---CCCSC--CEECTTS-CEEEEETTTEEEE
T ss_pred EEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCC---cceec--eEECCCC-eEEEEcCCCeEEE
Confidence 23333445677788877887544 44 7799999 6665554443221 11222 3446666 5666777788888
Q ss_pred EcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380 488 ISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535 (536)
Q Consensus 488 ~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~ 535 (536)
++. +++.+..+...... . ..+...+ ...|..++.+|.|..+|.
T Consensus 240 ~~~-~g~~~~~~~~~~~~-~-~~~~~~~--~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 240 INP-DGTEKWRFKTGKRI-E-SSPVIGN--TDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp ECT-TSCEEEEEECSSCC-C-SCCEECT--TSCEEEECTTCEEEEECT
T ss_pred ECC-CCCEeEEeeCCCCc-c-ccceEcC--CCeEEEecCCCCEEEECC
Confidence 875 45555555432211 1 1223332 357778888888888874
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.84 E-value=7.9e-07 Score=88.11 Aligned_cols=213 Identities=14% Similarity=0.089 Sum_probs=136.7
Q ss_pred cccccceEEecccccCccc--ccccc---------C-CceEEEEEEecCCccEEEEEeCC------CcEEEEECCCCCCC
Q 009380 210 KIEVGSCVDIGSLTLKPEN--IARIM---------P-GRITQMKFLPCSDVRMVVAGSKL------GNITFWNLDSQQDE 271 (536)
Q Consensus 210 ~~~~dg~v~lw~~~~~~~~--~~~~~---------~-~~I~~v~~~p~~~~~~l~tg~~d------g~v~iwd~~~~~~~ 271 (536)
.+..++.|.+.|+...+.. +.+.. . ..-..+.+.| +| +++++..+ |.|.++|..+
T Consensus 101 ~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p--dG-i~Vs~~g~~~g~~~g~v~vlD~~T---- 173 (462)
T 2ece_A 101 PGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP--DA-IYISALGNEEGEGPGGILMLDHYS---- 173 (462)
T ss_dssp EBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS--SC-EEEEEEEETTSCSCCEEEEECTTT----
T ss_pred ccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC--Ce-EEEEcCCCcCCCCCCeEEEEECCC----
Confidence 4667789999998554332 11211 1 1345567788 88 66666555 7899999987
Q ss_pred CCceEEeccCCCC---EEEEEEecCCCCEEEEEE-------------------CCCeEEEEECCCCeEEEeecCC---Cc
Q 009380 272 DNGIYLFRTHLGP---ISGIVTQQYCLSKIFTSC-------------------YDGLIRLMDAEKEVFDLVYSSE---YA 326 (536)
Q Consensus 272 ~~~~~~~~~h~~~---V~~l~~~~~~~~~l~s~s-------------------~dg~I~vwd~~~~~~~~~~~~~---~~ 326 (536)
...+..+..-..+ -..+.|+|++ +.+++.. .+.+|.+||+.+++....+... ..
T Consensus 174 ~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~ 252 (462)
T 2ece_A 174 FEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM 252 (462)
T ss_dssp CCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred CeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence 6667666532222 3357889998 8888885 4789999999988766555442 34
Q ss_pred eeEEEe--cCCCCCEEEEEE------CCCeEEEEECCCCcc--ceeE--ec----------------cCCCeEEEEEecC
Q 009380 327 VFSLSQ--QPNNVNTLYFGE------GQGGLNIWDVRSRKS--ATEW--LL----------------HEARINTIDFNPR 378 (536)
Q Consensus 327 i~~l~~--~~~~~~~l~~g~------~dg~i~i~d~~~~~~--~~~~--~~----------------h~~~i~~i~~~p~ 378 (536)
...+.| +|++ .++++++ .+++|.+|....+.. ...+ .. -......|.++||
T Consensus 253 P~~i~f~~~Pdg-~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 253 ALELRPLHDPTK-LMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEECSSTTC-CEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred cceeEeeECCCC-CEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 455655 9998 5666655 667888766544321 1111 00 0245788999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc---------------CceeEEEEccCCCeEEEEe
Q 009380 379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK---------------RAVHSAYFSPSGSSLATTS 433 (536)
Q Consensus 379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~---------------~~v~~l~~sp~g~~l~t~s 433 (536)
+..+.++.-..+.|.+||+.... .........-. ..-..+.++|+|++|+++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~--~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPF--KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTT--SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCC--CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 96555555557899999986432 11222222111 1358899999999998887
No 243
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.83 E-value=1.4e-05 Score=87.49 Aligned_cols=236 Identities=13% Similarity=0.117 Sum_probs=150.8
Q ss_pred eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEE-eccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380 237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYL-FRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE 315 (536)
Q Consensus 237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~ 315 (536)
|.++...+ ++.+.+ |+.++.|..|+..+. ..... ...+...|.++...+++ .|..++.++-|.+||..++
T Consensus 175 i~~i~~d~--~g~lwi-gt~~~Gl~~~~~~~~----~~~~~~~~~~~~~i~~i~~d~~g--~lwigt~~~Gl~~~~~~~~ 245 (795)
T 4a2l_A 175 IASTLYRQ--GDQIYI-GTSTDGLYTYSITQK----TFEKVIPILGTKQIQAILQQSPT--RIWVATEGAGLFLINPKTK 245 (795)
T ss_dssp CEEEEEEE--TTEEEE-EESSSCEEEEETTTC----CEEECC----CCCEEEEEEEETT--EEEEEEBSSCEEEEETTTT
T ss_pred eEEEEECC--CCCEEE-EECCCCEEEEeCCCC----eEEEecCCCCCCeeEEEEEcCCC--CEEEEECCCCeEEEeCCCC
Confidence 88999888 776555 665556889997652 21111 11235678888887775 5666665545899999887
Q ss_pred eEEEeecC--------CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-------ccCCCeEEEEEecCCC
Q 009380 316 VFDLVYSS--------EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-------LHEARINTIDFNPRNP 380 (536)
Q Consensus 316 ~~~~~~~~--------~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-------~h~~~i~~i~~~p~~~ 380 (536)
.+...... ...|.++...+++ .|.+|+.+ .|.+||..++....... .....|.+|...++|.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g--~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~ 322 (795)
T 4a2l_A 246 EIKNYLHSPSNPKSISSNYIRSLAMDSQN--RLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG 322 (795)
T ss_dssp EEEEECCCTTCTTSCSCSBEEEEEECTTS--CEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC
T ss_pred eEEEeecCCCCccccCCCeEEEEEEcCCC--CEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC
Confidence 66544321 3568999988876 46667766 68999987665322211 1335799999988763
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCcceee-------cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380 381 NIMATSSTDGTACIWDLRSMATDKPEPMKVL-------SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH 453 (536)
Q Consensus 381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-------~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~ 453 (536)
|..|+.++-|..|+..... ..... -....|.++..+++|. |..|+.++-|..||..+..... +.
T Consensus 323 --lWigt~~~Gl~~~~~~~~~-----~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~-~~ 393 (795)
T 4a2l_A 323 --MWLGTYFGGLNYYHPIRNR-----FKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTS-YT 393 (795)
T ss_dssp --EEEEESSSCEEEECGGGGS-----SEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEE-EC
T ss_pred --EEEEECCCCeEEeCCCccc-----ceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEE-Ee
Confidence 5567777779999876532 11111 1245699999998887 5567777679999987654322 21
Q ss_pred ccC------CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380 454 HNN------QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS 495 (536)
Q Consensus 454 ~~~------~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~ 495 (536)
... .....+. .+...++|..|.+|+.++.|.+||..+++.
T Consensus 394 ~~~~~~~~~l~~~~v~--~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~ 439 (795)
T 4a2l_A 394 LQEDESARGIGSNNIK--AVYVDEKKSLVYIGTHAGGLSILHRNSGQV 439 (795)
T ss_dssp CC------CCSCSCEE--EEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred cCCCCcccCCCCccEE--EEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence 110 1122233 344567777577888777799999887643
No 244
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.82 E-value=1.6e-06 Score=84.05 Aligned_cols=239 Identities=8% Similarity=-0.002 Sum_probs=144.5
Q ss_pred eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEecc--------------------CCCCEEEEEEecCCCC
Q 009380 237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT--------------------HLGPISGIVTQQYCLS 296 (536)
Q Consensus 237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~--------------------h~~~V~~l~~~~~~~~ 296 (536)
..+++|.+ ++.+++++..++.|..|+.... .+..+.. ....+..+++.+++ .
T Consensus 21 p~~i~~d~--~g~~l~v~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~-g 92 (322)
T 2fp8_A 21 PNSFTFDS--TNKGFYTSVQDGRVIKYEGPNS-----GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN-N 92 (322)
T ss_dssp CCCEECCT--TCSSEEEECTTSEEEEECCTTT-----CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT-T
T ss_pred ceEEEEcC--CCCEEEEEcCCCeEEEECCCCC-----ceEEEecccccccccccccccchhccccCCCCceEEEcCCC-C
Confidence 56778888 8887888888899999987642 2222211 11357899999733 4
Q ss_pred EEEEEECCCeEEEEECCCCeEEEeecC-----CCceeEEEecC-CCCCEEEEEEC-----------------CCeEEEEE
Q 009380 297 KIFTSCYDGLIRLMDAEKEVFDLVYSS-----EYAVFSLSQQP-NNVNTLYFGEG-----------------QGGLNIWD 353 (536)
Q Consensus 297 ~l~s~s~dg~I~vwd~~~~~~~~~~~~-----~~~i~~l~~~~-~~~~~l~~g~~-----------------dg~i~i~d 353 (536)
.|+.+...+.|..+|..++....+... ......+++.+ ++ ++.++-.. +|.|..||
T Consensus 93 ~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 93 QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEe
Confidence 566666666688999876654333211 13467899999 77 55544322 36799999
Q ss_pred CCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe
Q 009380 354 VRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS 433 (536)
Q Consensus 354 ~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s 433 (536)
..+++...... .....+.|+|+|++..++++-...+.|.+|++...... ....+....+ ...++++++|+++++..
T Consensus 172 ~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~--~~~~~~~~~g-P~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 172 PSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG--TAEVLVKIPN-PGNIKRNADGHFWVSSS 247 (322)
T ss_dssp TTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT--CEEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC--ccceEEeCCC-CCCeEECCCCCEEEEec
Confidence 87665422222 22345679999987434555566689999998753211 1111111223 78899999998666654
Q ss_pred C----------CCcEEEEeCCCCCcceEEeccCCC-CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380 434 F----------DDTIGIWSGVNFENTSMIHHNNQT-GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 434 ~----------dg~I~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~ 492 (536)
. .+.|..+|.. ++.+..+...... ...++. +++ .++.++++...++.|.++++..
T Consensus 248 ~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~--~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 248 EELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQ--IQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCE--EEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceE--EEE-eCCEEEEeecCCCceEEEeccc
Confidence 4 4668888863 5555555432111 122222 233 3555555555667888887653
No 245
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.80 E-value=5.4e-07 Score=82.86 Aligned_cols=194 Identities=10% Similarity=0.003 Sum_probs=127.6
Q ss_pred EEEeecCCCc--eeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeE--EEEEecCCCCEEEEEeCCCcE
Q 009380 317 FDLVYSSEYA--VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARIN--TIDFNPRNPNIMATSSTDGTA 392 (536)
Q Consensus 317 ~~~~~~~~~~--i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~--~i~~~p~~~~~l~s~s~dg~i 392 (536)
....+.|+.. ...+.|+. + .++.+.+.+|.|+++|+.+++.+..+ .. .... .+++. +..+.+..-.++.+
T Consensus 45 Vv~~~phd~~~ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEECCTTCCEEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEE
T ss_pred EEEEEcCCCccccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEE
Confidence 3444556543 36788873 2 56666677889999999999998887 33 3333 35554 54677777778999
Q ss_pred EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceee-eeEEEEcC
Q 009380 393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWIS-SFRAIWGW 471 (536)
Q Consensus 393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~ 471 (536)
.+||..+++ .+........-+.++ +++..|+.+..++.|.++|..+++....+..... +..+. ...+.|.
T Consensus 119 ~V~D~~Tl~-----~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~-g~~v~~lNeLe~~- 189 (268)
T 3nok_A 119 FTWSGMPPQ-----RERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR-GQPVELINELECA- 189 (268)
T ss_dssp EEEETTTTE-----EEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-
T ss_pred EEEECCcCc-----EEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC-CcccccccccEEe-
Confidence 999999863 333332223334444 5678888877889999999999988877754321 11111 1123444
Q ss_pred CCCEEEEEcCCCcEEEEcCCccccceeccCC-----------ceeeeeeeEeecCCCCCEEEEEc
Q 009380 472 DDSCVFIGNMTRTVEVISPAQRRSVATLQSP-----------YISAIPCRFHAHPHQVGTLAGAT 525 (536)
Q Consensus 472 ~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~-----------~~~~~~~~~~~~p~~~~~lasgs 525 (536)
+|..++..-.+..|.+.|..+++.+..+... ....+...++++|....+++||-
T Consensus 190 dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 190 NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 6755554546789999999999988777642 11235567999997667777764
No 246
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.80 E-value=3e-05 Score=84.99 Aligned_cols=299 Identities=8% Similarity=0.047 Sum_probs=171.9
Q ss_pred cccccccceEEecccccCccccc-------cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec-
Q 009380 208 TEKIEVGSCVDIGSLTLKPENIA-------RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR- 279 (536)
Q Consensus 208 ~~~~~~dg~v~lw~~~~~~~~~~-------~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~- 279 (536)
+|-+..++.|..++......... ......|.++...+ +|. |..|+.++-|..|+..+. . ...+.
T Consensus 323 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~--~g~-lWiGt~~~Gl~~~~~~~~----~-~~~~~~ 394 (795)
T 4a2l_A 323 MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK--DKN-LWIGTNDGGLNLYNPITQ----R-FTSYTL 394 (795)
T ss_dssp EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT--TSC-EEEEESSSCEEEECTTTC----C-EEEECC
T ss_pred EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC--CCC-EEEEECCCCeEEEcCCCC----c-EEEEec
Confidence 34444555666666432211111 11245699998877 665 555777778999998752 2 22221
Q ss_pred --------cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-----CCCceeEEEecCCCCCEEEEEECC
Q 009380 280 --------THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-----SEYAVFSLSQQPNNVNTLYFGEGQ 346 (536)
Q Consensus 280 --------~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-----~~~~i~~l~~~~~~~~~l~~g~~d 346 (536)
.....|.++...+++ ..|..|+.++-|.+||..++.+..... ....|.++...+++ .|.+|+.
T Consensus 395 ~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~lwigt~- 470 (795)
T 4a2l_A 395 QEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEG--NLWLGTL- 470 (795)
T ss_dssp C------CCSCSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSS--CEEEEES-
T ss_pred CCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCC--CEEEEec-
Confidence 124579999988876 647888887889999999887665432 24578899888776 4566666
Q ss_pred CeEEEEECCCCccceeEe------ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc--ceeecccCcee
Q 009380 347 GGLNIWDVRSRKSATEWL------LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP--MKVLSHKRAVH 418 (536)
Q Consensus 347 g~i~i~d~~~~~~~~~~~------~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~--~~~~~~~~~v~ 418 (536)
+.|.+||..+++...... .....|.++...+++ .+.+ |+. +-|..||..+... .... .........|.
T Consensus 471 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWi-gt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~ 546 (795)
T 4a2l_A 471 SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK-RLWI-GGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTN 546 (795)
T ss_dssp SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC-CEEE-EES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEE
T ss_pred CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC-CEEE-EeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeE
Confidence 469999987765322111 123678999988877 3443 444 4588898765321 0000 00012345789
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEec-cCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccce
Q 009380 419 SAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHH-NNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVA 497 (536)
Q Consensus 419 ~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~ 497 (536)
++..+++|.+.+. +.. -|..||..+.+. ..+.. .......+ ..+..+++|.+.+++ . +.|..|+..+++. .
T Consensus 547 ~i~~d~~g~lWig-T~~-Gl~~~d~~~~~~-~~~~~~~gl~~~~i--~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~-~ 618 (795)
T 4a2l_A 547 CIYEASNGIIWVG-TRE-GFYCFNEKDKQI-KRYNTTNGLPNNVV--YGILEDSFGRLWLST-N-RGISCFNPETEKF-R 618 (795)
T ss_dssp EEEECTTSCEEEE-ESS-CEEEEETTTTEE-EEECGGGTCSCSCE--EEEEECTTSCEEEEE-T-TEEEEEETTTTEE-E
T ss_pred EEEECCCCCEEEE-eCC-CceeECCCCCcE-EEeCCCCCCchhhe--EEEEECCCCCEEEEc-C-CceEEEcCCCCcE-E
Confidence 9999999885544 444 488899765432 22221 11112223 235567777665554 3 4577888776543 2
Q ss_pred eccCC---ceeee-eeeEeecCCCCCEEEEEccCCeEEE
Q 009380 498 TLQSP---YISAI-PCRFHAHPHQVGTLAGATGGGQVYV 532 (536)
Q Consensus 498 ~l~~~---~~~~~-~~~~~~~p~~~~~lasgs~Dg~v~i 532 (536)
.+... ..... ..++...+ + ..|..|+.+|.+++
T Consensus 619 ~~~~~dGl~~~~f~~~~~~~~~-~-G~l~~g~~~Gl~~~ 655 (795)
T 4a2l_A 619 NFTESDGLQSNQFNTASYCRTS-V-GQMYFGGINGITTF 655 (795)
T ss_dssp EECGGGTCSCSCEEEEEEEECT-T-SCEEEEETTEEEEE
T ss_pred EcCCcCCCccccCccCceeECC-C-CeEEEecCCceEEE
Confidence 22211 11111 12333343 4 45666666775543
No 247
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.79 E-value=6e-07 Score=82.57 Aligned_cols=193 Identities=11% Similarity=0.091 Sum_probs=124.1
Q ss_pred EEeecCCCc--eeEEEecCCCCCEEEEEECCC--eEEEEECCCCccceeEeccCCCeE--EEEEecCCCCEEEEEeCCCc
Q 009380 318 DLVYSSEYA--VFSLSQQPNNVNTLYFGEGQG--GLNIWDVRSRKSATEWLLHEARIN--TIDFNPRNPNIMATSSTDGT 391 (536)
Q Consensus 318 ~~~~~~~~~--i~~l~~~~~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~~~i~--~i~~~p~~~~~l~s~s~dg~ 391 (536)
...+.|+.. ...+.|+ ++ .++.+.+.+| .|+++|+.+++.+..+.... ... .+++. +..+.+..-.++.
T Consensus 34 v~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~ 108 (262)
T 3nol_A 34 VHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCE
Confidence 344566544 4788888 44 5555666655 89999999999988887433 333 34544 5456666666899
Q ss_pred EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee-EEEEc
Q 009380 392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF-RAIWG 470 (536)
Q Consensus 392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~s 470 (536)
+.+||..+.+ ..........-..+ ++++..|+.+..++.|.++|..+++....+.... .+..+..+ .+.|.
T Consensus 109 v~v~D~~t~~-----~~~ti~~~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~~~lNELe~~ 180 (262)
T 3nol_A 109 GFVWNIRNLR-----QVRSFNYDGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEELPELNELEWV 180 (262)
T ss_dssp EEEEETTTCC-----EEEEEECSSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEECCCEEEEEEE
T ss_pred EEEEECccCc-----EEEEEECCCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccccccceeEEE
Confidence 9999999864 33333222222333 4567777777778889999999998887775421 11121111 13354
Q ss_pred CCCCEEEEEcCCCcEEEEcCCccccceeccCC----------ceeeeeeeEeecCCCCCEEEEE
Q 009380 471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSP----------YISAIPCRFHAHPHQVGTLAGA 524 (536)
Q Consensus 471 ~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~----------~~~~~~~~~~~~p~~~~~lasg 524 (536)
+|..++..-.++.|.+.|..+++.+..+... ....+...++++|....++++|
T Consensus 181 -~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 181 -DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp -TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred -CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 6755555556789999999999988777642 1123556789999654555555
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.78 E-value=2.5e-06 Score=82.59 Aligned_cols=235 Identities=11% Similarity=0.024 Sum_probs=144.3
Q ss_pred CEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC--------------------CCceeEEEecCCCCCEEEEE
Q 009380 284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS--------------------EYAVFSLSQQPNNVNTLYFG 343 (536)
Q Consensus 284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~--------------------~~~i~~l~~~~~~~~~l~~g 343 (536)
...+++|.+++ ++++++..++.|..||..++........ ...+..+++.+++ ..|+++
T Consensus 20 ~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~-g~l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN-NQLYIV 97 (322)
T ss_dssp CCCCEECCTTC-SSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT-TEEEEE
T ss_pred CceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCC-CcEEEE
Confidence 35678899987 7788888999999999887655433210 1357889999733 356667
Q ss_pred ECCCeEEEEECCCCccceeEec-----cCCCeEEEEEec-CCCCEEEEEeC-----------------CCcEEEEeCCCC
Q 009380 344 EGQGGLNIWDVRSRKSATEWLL-----HEARINTIDFNP-RNPNIMATSST-----------------DGTACIWDLRSM 400 (536)
Q Consensus 344 ~~dg~i~i~d~~~~~~~~~~~~-----h~~~i~~i~~~p-~~~~~l~s~s~-----------------dg~i~iwdl~~~ 400 (536)
...+.|..+|..++.. ..+.. .....+.+++.+ +| ++.++-.. ++.|..||..++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 6666789998775542 22221 123578899999 77 55555432 367888887653
Q ss_pred CCCCCCcceeecccCceeEEEEccCCCeEEEE-eCCCcEEEEeCCCCC--cceEEeccCCCCceeeeeEEEEcCCCCEEE
Q 009380 401 ATDKPEPMKVLSHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFE--NTSMIHHNNQTGRWISSFRAIWGWDDSCVF 477 (536)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~-s~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 477 (536)
. .......-...+.++|+|+|+.|+.+ +..+.|.+|++.... ....+.. ..+ .-.++++++|.+++
T Consensus 176 ~-----~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g----P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 176 E-----TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN----PGNIKRNADGHFWV 244 (322)
T ss_dssp E-----EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS----EEEEEECTTSCEEE
T ss_pred E-----EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC----CCCeEECCCCCEEE
Confidence 2 22222222455789999999866655 556889999987532 1122221 112 12256788998666
Q ss_pred EEcC----------CCcEEEEcCCccccceeccCCce--eeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 478 IGNM----------TRTVEVISPAQRRSVATLQSPYI--SAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 478 ~gs~----------dg~I~v~d~~~~~~~~~l~~~~~--~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
+... .+.|..+|.. ++.+..+..... ......+.+. ++.++++....+.|.+++++
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEEEEEC-
T ss_pred EecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe--CCEEEEeecCCCceEEEecc
Confidence 6544 4678888875 556655543321 0111233342 44566666678889888763
No 249
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.77 E-value=3.2e-06 Score=88.65 Aligned_cols=236 Identities=8% Similarity=0.060 Sum_probs=148.2
Q ss_pred ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC----CCEEE-EEEecCCCCEEEEEEC------CCeEEEEECCCCe
Q 009380 248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL----GPISG-IVTQQYCLSKIFTSCY------DGLIRLMDAEKEV 316 (536)
Q Consensus 248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~----~~V~~-l~~~~~~~~~l~s~s~------dg~I~vwd~~~~~ 316 (536)
+..|++++.|+.|..+|..+ ++.+..+.... ..+.+ ... .+ ..++.++. ++.|..+|..+++
T Consensus 115 ~~~v~v~~~dg~l~alD~~t----G~~~W~~~~~~~~~~~~~~~~P~v--~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKT----GKINWEVEVCDPKVGSTLTQAPFV--AK-DTVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp TTEEEEECTTSEEEEEETTT----CCEEEEEECCCGGGTCBCCSCCEE--ET-TEEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred CCEEEEEeCCCEEEEEECCC----CCEEEEecCCCCCccceeccCCEE--EC-CEEEEEecCCccCCCCEEEEEECCCCc
Confidence 45777888899999999987 55554433211 01111 111 13 46666665 7999999999988
Q ss_pred EEEeecCCCce---------------------------------------eEEEecCCCCCEEEEEECC-----------
Q 009380 317 FDLVYSSEYAV---------------------------------------FSLSQQPNNVNTLYFGEGQ----------- 346 (536)
Q Consensus 317 ~~~~~~~~~~i---------------------------------------~~l~~~~~~~~~l~~g~~d----------- 346 (536)
....+...... ..+++.+.. ..+++++.+
T Consensus 188 ~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g~vy~~~g~~~~~~~~~~~g 266 (571)
T 2ad6_A 188 LKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPG 266 (571)
T ss_dssp EEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCS
T ss_pred EEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCC-CeEEEECCCCccccCCccCC
Confidence 76554332211 134566655 577777642
Q ss_pred -----CeEEEEECCCCccceeEec--cC--------CCeEEEEEecCCC--CEEEEEeCCCcEEEEeCCCCCCCCCCcce
Q 009380 347 -----GGLNIWDVRSRKSATEWLL--HE--------ARINTIDFNPRNP--NIMATSSTDGTACIWDLRSMATDKPEPMK 409 (536)
Q Consensus 347 -----g~i~i~d~~~~~~~~~~~~--h~--------~~i~~i~~~p~~~--~~l~s~s~dg~i~iwdl~~~~~~~~~~~~ 409 (536)
+.|..+|..+++.+..++. |. .++. +....+|. .+++.++.+|.++++|..+++. +..
T Consensus 267 d~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~----~w~ 341 (571)
T 2ad6_A 267 DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNL----IVA 341 (571)
T ss_dssp CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCE----EEE
T ss_pred CceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCE----Eee
Confidence 3699999999998877763 21 1221 22223452 3677888899999999988752 111
Q ss_pred ee-cc------------cCce--------------------------eEEEEccCCCeEEEEe-----------------
Q 009380 410 VL-SH------------KRAV--------------------------HSAYFSPSGSSLATTS----------------- 433 (536)
Q Consensus 410 ~~-~~------------~~~v--------------------------~~l~~sp~g~~l~t~s----------------- 433 (536)
.. .. ..++ ..++|+|+..+|++.+
T Consensus 342 ~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g 421 (571)
T 2ad6_A 342 EKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAG 421 (571)
T ss_dssp EESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTT
T ss_pred ecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccC
Confidence 10 00 0011 3467888777666653
Q ss_pred --------------------CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 434 --------------------FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 434 --------------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
.++.|..||+.+++....+........ ......+..+++++.|+.|++||..++
T Consensus 422 ~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~------~~~~t~gg~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 422 QFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG------GTLYTKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp SCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS------BCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccc------eeEEECCCEEEEEcCCCeEEEEECCCC
Confidence 347899999999988777654322110 111224567888999999999999999
Q ss_pred ccceeccCC
Q 009380 494 RSVATLQSP 502 (536)
Q Consensus 494 ~~~~~l~~~ 502 (536)
+.+.++...
T Consensus 496 ~~lw~~~~~ 504 (571)
T 2ad6_A 496 KELWNFKMP 504 (571)
T ss_dssp CEEEEEECS
T ss_pred CEEEEEeCC
Confidence 999888754
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.77 E-value=4.3e-06 Score=87.69 Aligned_cols=271 Identities=11% Similarity=0.055 Sum_probs=159.2
Q ss_pred cEEEEEeC-CCcEEEEEC-CCCCCCCCceEEeccCCC-----------CEEEEEEecCCCCE----EEEEECCCeEEEEE
Q 009380 249 RMVVAGSK-LGNITFWNL-DSQQDEDNGIYLFRTHLG-----------PISGIVTQQYCLSK----IFTSCYDGLIRLMD 311 (536)
Q Consensus 249 ~~l~tg~~-dg~v~iwd~-~~~~~~~~~~~~~~~h~~-----------~V~~l~~~~~~~~~----l~s~s~dg~I~vwd 311 (536)
..|++++. ++.|.-+|. .+ ++.+-.+..... ....+++.|.+ .. |+.++.|+.|..+|
T Consensus 63 g~vyv~~~~~~~v~AlD~~~t----G~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~-g~~~~rV~v~t~dg~l~AlD 137 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDP----GTILWQDKPKQNPAARAVACCDLVNRGLAYWPGD-GKTPALILKTQLDGNVAALN 137 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCT----TSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCC-SSSCCEEEEECTTSEEEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCC----CcEEEEECCCCCccccccccccccccceEEEecC-CcceeEEEEEcCCCEEEEEE
Confidence 45555666 788888888 66 455544433211 01234554443 44 88899999999999
Q ss_pred CCCCeEEEeecCCC-----ceeE-EEecCCCCCEEEEEEC------CCeEEEEECCCCccceeEeccCCC----------
Q 009380 312 AEKEVFDLVYSSEY-----AVFS-LSQQPNNVNTLYFGEG------QGGLNIWDVRSRKSATEWLLHEAR---------- 369 (536)
Q Consensus 312 ~~~~~~~~~~~~~~-----~i~~-l~~~~~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~~~---------- 369 (536)
..+++......... .+.+ -.+. + ..+++++. +|.|+.+|..+++.+..+......
T Consensus 138 a~TG~~~W~~~~~~~~~~~~~~ssP~v~-~--g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~ 214 (599)
T 1w6s_A 138 AETGETVWKVENSDIKVGSTLTIAPYVV-K--DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFN 214 (599)
T ss_dssp TTTCCEEEEEECCCGGGTCBCCSCCEEE-T--TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred CCCCCEEEeecCCCCCccceeecCCEEE-C--CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccc
Confidence 99998765543222 2221 1111 2 36666653 799999999999987766532111
Q ss_pred ---------------------------e-EEEEEecCCCCEEEEEeCC----------------CcEEEEeCCCCCCCCC
Q 009380 370 ---------------------------I-NTIDFNPRNPNIMATSSTD----------------GTACIWDLRSMATDKP 405 (536)
Q Consensus 370 ---------------------------i-~~i~~~p~~~~~l~s~s~d----------------g~i~iwdl~~~~~~~~ 405 (536)
+ ..+++.+.. .+++.+..+ +.|..+|..+++
T Consensus 215 ~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~---- 289 (599)
T 1w6s_A 215 IKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE---- 289 (599)
T ss_dssp TTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC----
T ss_pred cccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc----
Confidence 0 134555655 466666554 378999999875
Q ss_pred Ccceee--cccC-------ceeEEEEc-cCC---CeEEEEeCCCcEEEEeCCCCCcceEEeccC----------CCCcee
Q 009380 406 EPMKVL--SHKR-------AVHSAYFS-PSG---SSLATTSFDDTIGIWSGVNFENTSMIHHNN----------QTGRWI 462 (536)
Q Consensus 406 ~~~~~~--~~~~-------~v~~l~~s-p~g---~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~----------~~~~~~ 462 (536)
..-... .|.. ...-+... .+| ..++.++.+|.+.++|..+++.+....... ..++.+
T Consensus 290 ~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~ 369 (599)
T 1w6s_A 290 AKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPV 369 (599)
T ss_dssp EEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEE
T ss_pred eeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCcee
Confidence 222222 2211 11112222 467 467778899999999999998876654221 111111
Q ss_pred e-------------e-----------eEEEEcCCCCEEEEE---------------------------------c-----
Q 009380 463 S-------------S-----------FRAIWGWDDSCVFIG---------------------------------N----- 480 (536)
Q Consensus 463 ~-------------~-----------~~~~~s~~g~~l~~g---------------------------------s----- 480 (536)
. . -.++++|+..++++. +
T Consensus 370 ~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~ 449 (599)
T 1w6s_A 370 RDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNY 449 (599)
T ss_dssp ECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTT
T ss_pred eccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccC
Confidence 0 0 013456655554442 1
Q ss_pred -CCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 481 -MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 481 -~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
..|.|..||+.+++.+.+...... .....+.. .+.++..++.||.|+.||.+
T Consensus 450 ~~~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t---agg~vf~gt~dg~l~A~D~~ 502 (599)
T 1w6s_A 450 EGLGQIKAYNAITGDYKWEKMERFA-VWGGTMAT---AGDLVFYGTLDGYLKARDSD 502 (599)
T ss_dssp BCCEEEEEECTTTCCEEEEEEESSC-CCSBCEEE---TTTEEEEECTTSEEEEEETT
T ss_pred CCcCeEEEEECCCCCEEeEecCCCC-ccCcceEe---cCCEEEEECCCCeEEEEECC
Confidence 347899999999988877653211 11011222 35788889999999999863
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.76 E-value=1.4e-06 Score=81.12 Aligned_cols=197 Identities=12% Similarity=0.012 Sum_probs=128.6
Q ss_pred EEEEEEecCCCCEEEEEEC--CCeEEEEECCCCeEEEeecCCC--ceeEEEecCCCCCEEEEEE-CCCeEEEEECCCCcc
Q 009380 285 ISGIVTQQYCLSKIFTSCY--DGLIRLMDAEKEVFDLVYSSEY--AVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSRKS 359 (536)
Q Consensus 285 V~~l~~~~~~~~~l~s~s~--dg~I~vwd~~~~~~~~~~~~~~--~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~ 359 (536)
...+.|++++ .++++.+. ++.|+++|+.+++......... ....+++. + ..|+.++ .++.+.++|..+.+.
T Consensus 23 ~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g-~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 23 TQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--N-EKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp EEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--T-TEEEEEETTCSEEEEEETTTTEE
T ss_pred cccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--C-CEEEEEEecCCEEEEEECCCCcE
Confidence 6799999985 54454443 6899999999998776654333 22345554 4 3555554 578999999999998
Q ss_pred ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--ccc---CceeEEEEccCCCeEEEEeC
Q 009380 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SHK---RAVHSAYFSPSGSSLATTSF 434 (536)
Q Consensus 360 ~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~~---~~v~~l~~sp~g~~l~t~s~ 434 (536)
+.++...... ...+++++..++++ ..++.|.++|..+.+ ....+. ... ..++.+.|. +|..++....
T Consensus 99 ~~~i~~g~~~--g~glt~Dg~~l~vs-~gs~~l~viD~~t~~----v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~ 170 (266)
T 2iwa_A 99 IKNFTHQMKD--GWGLATDGKILYGS-DGTSILYEIDPHTFK----LIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ 170 (266)
T ss_dssp EEEEECCSSS--CCEEEECSSSEEEE-CSSSEEEEECTTTCC----EEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred EEEEECCCCC--eEEEEECCCEEEEE-CCCCeEEEEECCCCc----EEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence 8888632111 23455677555555 468899999998853 222222 111 236788888 7765555556
Q ss_pred CCcEEEEeCCCCCcceEEeccC--------CCCceeeeeEEEEcCCCCEEE-EEcCCCcEEEEcCCcc
Q 009380 435 DDTIGIWSGVNFENTSMIHHNN--------QTGRWISSFRAIWGWDDSCVF-IGNMTRTVEVISPAQR 493 (536)
Q Consensus 435 dg~I~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~s~~g~~l~-~gs~dg~I~v~d~~~~ 493 (536)
++.|.+.|..+++....+.... ..........++|+++++.|+ ++...+.|.+.++...
T Consensus 171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 8899999999999888885421 001111223478999987655 5556688888887654
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.76 E-value=5.3e-06 Score=86.93 Aligned_cols=269 Identities=13% Similarity=0.082 Sum_probs=159.7
Q ss_pred cEEEEEeC-CCcEEEEEC-CCCCCCCCceEEeccCCC----------C-EEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380 249 RMVVAGSK-LGNITFWNL-DSQQDEDNGIYLFRTHLG----------P-ISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE 315 (536)
Q Consensus 249 ~~l~tg~~-dg~v~iwd~-~~~~~~~~~~~~~~~h~~----------~-V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~ 315 (536)
..|++++. ++.|.-+|. .+ ++.+-.+..... . -..+.. .+ ..++.++.|+.|..+|..++
T Consensus 63 g~vyv~~~~~~~v~AlD~~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~v~v~~~dg~l~alD~~tG 135 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDP----GKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GA-GQIVKKQANGHLLALDAKTG 135 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCT----TSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ET-TEEEEECTTSEEEEEETTTC
T ss_pred CEEEEEeCCCCEEEEEeCCCC----ccEEEEEcCCCCccccccccccccccccEE--EC-CEEEEEeCCCEEEEEECCCC
Confidence 34555565 788888888 66 455444432211 0 011222 23 68888999999999999999
Q ss_pred eEEEeecCCC-----ceeE-EEecCCCCCEEEEEEC------CCeEEEEECCCCccceeEeccCCC--------------
Q 009380 316 VFDLVYSSEY-----AVFS-LSQQPNNVNTLYFGEG------QGGLNIWDVRSRKSATEWLLHEAR-------------- 369 (536)
Q Consensus 316 ~~~~~~~~~~-----~i~~-l~~~~~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~~~-------------- 369 (536)
+....+.... .+.+ .... + ..+++++. +|.|..+|..+++.+.++......
T Consensus 136 ~~~W~~~~~~~~~~~~~~~~P~v~-~--g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~ 212 (571)
T 2ad6_A 136 KINWEVEVCDPKVGSTLTQAPFVA-K--DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP 212 (571)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T--TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CEEEEecCCCCCccceeccCCEEE-C--CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence 8765543222 2221 1111 2 46777765 789999999999987766532110
Q ss_pred ------------------------eEEEEEecCCCCEEEEEeCC----------------CcEEEEeCCCCCCCCCCcce
Q 009380 370 ------------------------INTIDFNPRNPNIMATSSTD----------------GTACIWDLRSMATDKPEPMK 409 (536)
Q Consensus 370 ------------------------i~~i~~~p~~~~~l~s~s~d----------------g~i~iwdl~~~~~~~~~~~~ 409 (536)
...+++.+.. ..++.+..+ +.|..+|..+++ ..-.
T Consensus 213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~----~~W~ 287 (571)
T 2ad6_A 213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM----AKWG 287 (571)
T ss_dssp GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC----EEEE
T ss_pred cccccccccccCcccceecCCCCeeeeEEEcCCC-CeEEEECCCCccccCCccCCCceeEEEEEEEecCCCc----EEEE
Confidence 0135566654 355555432 258999999875 2222
Q ss_pred ee--cccC-------ceeEEEEccCCC---eEEEEeCCCcEEEEeCCCCCcceEEeccC----------CCCceee----
Q 009380 410 VL--SHKR-------AVHSAYFSPSGS---SLATTSFDDTIGIWSGVNFENTSMIHHNN----------QTGRWIS---- 463 (536)
Q Consensus 410 ~~--~~~~-------~v~~l~~sp~g~---~l~t~s~dg~I~iwd~~~~~~~~~~~~~~----------~~~~~~~---- 463 (536)
.. .|.. ...-+...++|+ .++.++.+|.+.++|..+++.+..+.... ..++.+.
T Consensus 288 ~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~ 367 (571)
T 2ad6_A 288 YQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEF 367 (571)
T ss_dssp EESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGG
T ss_pred ecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceeccccc
Confidence 21 1211 111122234674 57788899999999999998776654322 1111110
Q ss_pred ---------e-----------eEEEEcCCCCEEEEEc-------------------------------------CCCcEE
Q 009380 464 ---------S-----------FRAIWGWDDSCVFIGN-------------------------------------MTRTVE 486 (536)
Q Consensus 464 ---------~-----------~~~~~s~~g~~l~~gs-------------------------------------~dg~I~ 486 (536)
. -.++++|+..+|++.+ .++.|.
T Consensus 368 ~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~ 447 (571)
T 2ad6_A 368 ATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIR 447 (571)
T ss_dssp CCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEE
T ss_pred CCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEE
Confidence 0 0145777777776653 347899
Q ss_pred EEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 487 VISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 487 v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
.||..+++.+.++..... .....+.. .+..++.++.||.|+.||.+
T Consensus 448 a~D~~tG~~~W~~~~~~~-~~~~~~~t---~gg~v~~g~~dg~l~a~D~~ 493 (571)
T 2ad6_A 448 AFDLTTGKAKWTKWEKFA-AWGGTLYT---KGGLVWYATLDGYLKALDNK 493 (571)
T ss_dssp EECTTTCCEEEEEEESSC-CCSBCEEE---TTTEEEEECTTSEEEEEETT
T ss_pred EEECCCCCEEEEecCCCC-ccceeEEE---CCCEEEEEcCCCeEEEEECC
Confidence 999999988877754221 11111222 24678889999999999863
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.75 E-value=6.2e-07 Score=82.47 Aligned_cols=191 Identities=12% Similarity=0.066 Sum_probs=123.4
Q ss_pred cCCCC--EEEEEEecCCCCEEEEEECCC--eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEE-CCCeEEEEEC
Q 009380 280 THLGP--ISGIVTQQYCLSKIFTSCYDG--LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDV 354 (536)
Q Consensus 280 ~h~~~--V~~l~~~~~~~~~l~s~s~dg--~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~ 354 (536)
.|... ...|.|+ ++ .++.+.+.+| .|+++|+.+++.................+.+ +.|+..+ .++.+.+||.
T Consensus 38 phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g-~~ly~ltw~~~~v~v~D~ 114 (262)
T 3nol_A 38 PHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWK-DKIVGLTWKNGLGFVWNI 114 (262)
T ss_dssp ECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEET
T ss_pred cCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeC-CEEEEEEeeCCEEEEEEC
Confidence 45443 4788998 55 6777777766 8999999999887666555555443333344 4555555 5789999999
Q ss_pred CCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--ccc---CceeEEEEccCCCeE
Q 009380 355 RSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SHK---RAVHSAYFSPSGSSL 429 (536)
Q Consensus 355 ~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~~---~~v~~l~~sp~g~~l 429 (536)
.+.+.+.++...... ..+ ++++..++++ ..++.|.++|..+.+ ....+. ... ..++.+.|. +|..+
T Consensus 115 ~t~~~~~ti~~~~eG-~gl--t~dg~~L~~S-dGs~~i~~iDp~T~~----v~~~I~V~~~g~~~~~lNELe~~-~G~ly 185 (262)
T 3nol_A 115 RNLRQVRSFNYDGEG-WGL--THNDQYLIMS-DGTPVLRFLDPESLT----PVRTITVTAHGEELPELNELEWV-DGEIF 185 (262)
T ss_dssp TTCCEEEEEECSSCC-CCE--EECSSCEEEC-CSSSEEEEECTTTCS----EEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred ccCcEEEEEECCCCc-eEE--ecCCCEEEEE-CCCCeEEEEcCCCCe----EEEEEEeccCCccccccceeEEE-CCEEE
Confidence 999999888743222 233 3556445544 447789999998864 222211 122 334567776 77655
Q ss_pred EEEeCCCcEEEEeCCCCCcceEEeccCCC-------CceeeeeEEEEcCCCCEEEEEcCC
Q 009380 430 ATTSFDDTIGIWSGVNFENTSMIHHNNQT-------GRWISSFRAIWGWDDSCVFIGNMT 482 (536)
Q Consensus 430 ~t~s~dg~I~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~s~~g~~l~~gs~d 482 (536)
+..-.++.|.+.|..+++....+...... ...-...-++|+|+++.|++.+..
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 55556889999999999988888643110 000112337899988877776643
No 254
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.73 E-value=1.1e-06 Score=93.95 Aligned_cols=241 Identities=16% Similarity=0.184 Sum_probs=152.0
Q ss_pred ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC----CCEEE-EEEecCCCCEEEEEEC------CCeEEEEECCCCe
Q 009380 248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL----GPISG-IVTQQYCLSKIFTSCY------DGLIRLMDAEKEV 316 (536)
Q Consensus 248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~----~~V~~-l~~~~~~~~~l~s~s~------dg~I~vwd~~~~~ 316 (536)
+..|++++.|+.|..+|..+ ++.+..+.... ..+.+ ... .+ ..++.+.. +|.|..+|..+++
T Consensus 117 ~~~v~v~~~dg~l~alD~~t----G~~~W~~~~~~~~~~~~~~~~P~v--~~-~~v~vg~~~~~~~~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKT----GKAIWSQQTTDPAKPYSITGAPRV--VK-GKVIIGNGGAEYGVRGFVSAYDADTGK 189 (668)
T ss_dssp BTEEEEECTTSEEEEEETTT----CCEEEEEECSCTTSSCBCCSCCEE--ET-TEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CCEEEEEcCCCEEEEEECCC----CCEeeeeccCCCCCcceecCCCEE--EC-CEEEEeCCCCCcCCCCEEEEEECCCCc
Confidence 35778888899999999988 55555554321 11111 011 12 45665543 5899999999998
Q ss_pred EEEeecCC--C------------------------------ceeEEEecCCCCCEEEEEECCCe----------------
Q 009380 317 FDLVYSSE--Y------------------------------AVFSLSQQPNNVNTLYFGEGQGG---------------- 348 (536)
Q Consensus 317 ~~~~~~~~--~------------------------------~i~~l~~~~~~~~~l~~g~~dg~---------------- 348 (536)
....+... . ....+++.+.. .++++++.++.
T Consensus 190 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~ 268 (668)
T 1kv9_A 190 LAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLY 268 (668)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCcee
Confidence 76554321 0 11246777776 68888887763
Q ss_pred ---EEEEECCCCccceeEec--cC-------CCeEEEEEecCCC--CEEEEEeCCCcEEEEeCCCCCCCCCC-------c
Q 009380 349 ---LNIWDVRSRKSATEWLL--HE-------ARINTIDFNPRNP--NIMATSSTDGTACIWDLRSMATDKPE-------P 407 (536)
Q Consensus 349 ---i~i~d~~~~~~~~~~~~--h~-------~~i~~i~~~p~~~--~~l~s~s~dg~i~iwdl~~~~~~~~~-------~ 407 (536)
|..+|..+++.+..++. |. .+.....+..++. ..++.++.+|.++++|..+++..... .
T Consensus 269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 348 (668)
T 1kv9_A 269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA 348 (668)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence 99999999998877763 32 2222223333442 26888999999999999987521000 0
Q ss_pred ceee-cccC------------------------ceeEEEEccCCCeEEEE------------------------------
Q 009380 408 MKVL-SHKR------------------------AVHSAYFSPSGSSLATT------------------------------ 432 (536)
Q Consensus 408 ~~~~-~~~~------------------------~v~~l~~sp~g~~l~t~------------------------------ 432 (536)
..+. .... .-..++++|+..++++.
T Consensus 349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 428 (668)
T 1kv9_A 349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA 428 (668)
T ss_dssp EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence 0000 0000 01236788866655542
Q ss_pred ------eCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC
Q 009380 433 ------SFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP 502 (536)
Q Consensus 433 ------s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~ 502 (536)
..+|.|..||+.+++.+.......... . ..+...+.+|++|+.|+.|++||..+++.+..+...
T Consensus 429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~--~----~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 429 TDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWN--G----GTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp CCCCGGGCEEEEEEEETTTTEEEEEEEESSSCC--C----CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCCCCCccceEEEEeCCCCcEEEEccCCCCCc--C----ceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 134789999999998877765432211 0 122346779999999999999999999999888654
No 255
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.71 E-value=1.1e-05 Score=77.48 Aligned_cols=229 Identities=10% Similarity=0.046 Sum_probs=138.3
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-C-eEEEEEC
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-G-LIRLMDA 312 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-g-~I~vwd~ 312 (536)
.....++|+| ++.++++-..++.|..|+... .....+ ........+++.+++ +++++.... + .|..+|.
T Consensus 32 ~~pegia~~~--~g~lyv~d~~~~~I~~~d~~g-----~~~~~~-~~~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~ 102 (306)
T 2p4o_A 32 TFLENLASAP--DGTIFVTNHEVGEIVSITPDG-----NQQIHA-TVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVK 102 (306)
T ss_dssp CCEEEEEECT--TSCEEEEETTTTEEEEECTTC-----CEEEEE-ECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEEC
T ss_pred CCcceEEECC--CCCEEEEeCCCCeEEEECCCC-----ceEEEE-eCCCCceeEEEcCCC-cEEEEeccCCcceEEEEcC
Confidence 4577899999 888877777889999998764 222222 223468899999998 655554332 2 4777787
Q ss_pred CCCeEEEeecC--CCceeEEEecCCCCCEEEEEE-CCCeEEEEECCCCcc-ceeEe---------ccCCCeEEEEEecCC
Q 009380 313 EKEVFDLVYSS--EYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSRKS-ATEWL---------LHEARINTIDFNPRN 379 (536)
Q Consensus 313 ~~~~~~~~~~~--~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~-~~~~~---------~h~~~i~~i~~~p~~ 379 (536)
.++....+... ......++..+.+ .+++.. .+|.|+++|..+++. +.... ..-...+.| +|++
T Consensus 103 ~~g~~~~~~~~~~~~~~~g~~~~~~~--~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg 178 (306)
T 2p4o_A 103 SDGTVETLLTLPDAIFLNGITPLSDT--QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG 178 (306)
T ss_dssp TTSCEEEEEECTTCSCEEEEEESSSS--EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred CCCeEEEEEeCCCccccCcccccCCC--cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence 77776544432 2233455554443 445444 588999999875421 11100 111234566 7777
Q ss_pred CCEEEEEeCCCcEEEEeCCC-CCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC
Q 009380 380 PNIMATSSTDGTACIWDLRS-MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT 458 (536)
Q Consensus 380 ~~~l~s~s~dg~i~iwdl~~-~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~ 458 (536)
..++++-...+.|..||+.. +.. ..............++++++|+++++....+.|.+||.. ++..........
T Consensus 179 ~~lyv~d~~~~~I~~~~~~~~g~~---~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~- 253 (306)
T 2p4o_A 179 NFLYVSNTEKMLLLRIPVDSTDKP---GEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG- 253 (306)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCB---CCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT-
T ss_pred CEEEEEeCCCCEEEEEEeCCCCCC---CccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc-
Confidence 55666666778999999875 211 111122112456779999999877777778899999974 433221111111
Q ss_pred CceeeeeEEEEc---CCCCEEEEEcCCC
Q 009380 459 GRWISSFRAIWG---WDDSCVFIGNMTR 483 (536)
Q Consensus 459 ~~~~~~~~~~~s---~~g~~l~~gs~dg 483 (536)
.... ..++|. +++..|++.+..+
T Consensus 254 ~~~p--~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 254 VIGS--TAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CTTE--EEEEECCSTTTTTEEEEEECTT
T ss_pred cCCc--eEEEEecccCCCCEEEEECCCC
Confidence 1122 236677 7877777766543
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.71 E-value=2.6e-06 Score=77.62 Aligned_cols=195 Identities=9% Similarity=0.010 Sum_probs=124.7
Q ss_pred EEEeecCCC--ceeEEEecCCCCCEEEEEECC--CeEEEEECCCCccceeEeccCCC-eEEEEEecCCCCEEEEEeCCCc
Q 009380 317 FDLVYSSEY--AVFSLSQQPNNVNTLYFGEGQ--GGLNIWDVRSRKSATEWLLHEAR-INTIDFNPRNPNIMATSSTDGT 391 (536)
Q Consensus 317 ~~~~~~~~~--~i~~l~~~~~~~~~l~~g~~d--g~i~i~d~~~~~~~~~~~~h~~~-i~~i~~~p~~~~~l~s~s~dg~ 391 (536)
....+.|+. -...+.|+. + .++.+.+.+ ..|+.+|+.+++.+..+...... --.+++. +..++...-.++.
T Consensus 11 v~~~~phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEcCCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCE
Confidence 344456653 455889986 3 444555554 48999999999998887643322 1334544 4456666667899
Q ss_pred EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC--CCceeeeeEEEE
Q 009380 392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ--TGRWISSFRAIW 469 (536)
Q Consensus 392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 469 (536)
+.+||..+.+ ..........-..++ +++..|+.+..++.|.++|..+.+....+..... .-..+.- +.|
T Consensus 87 v~v~D~~tl~-----~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe--Le~ 157 (243)
T 3mbr_X 87 GFVYDLATLT-----PRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE--LEW 157 (243)
T ss_dssp EEEEETTTTE-----EEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE--EEE
T ss_pred EEEEECCcCc-----EEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee--eEE
Confidence 9999998863 333333333334444 5677777777789999999999988877753221 1111222 333
Q ss_pred cCCCCEEEEEcCCCcEEEEcCCccccceeccCC-----------ceeeeeeeEeecCCCCCEEEEEc
Q 009380 470 GWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP-----------YISAIPCRFHAHPHQVGTLAGAT 525 (536)
Q Consensus 470 s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~-----------~~~~~~~~~~~~p~~~~~lasgs 525 (536)
. +|..++..-.+..|.+.|..+++.+..+... ....+...++++|....++++|-
T Consensus 158 ~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 158 V-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp E-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred e-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 3 6655555546789999999999988776532 12235567899996655666653
No 257
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.70 E-value=4.5e-05 Score=74.66 Aligned_cols=208 Identities=11% Similarity=-0.016 Sum_probs=132.1
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK 314 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~ 314 (536)
..+..++|++. ++.++++-...+.|..+++.. ......+.........+++.+.+..++++-...+.|.+.++..
T Consensus 73 ~~~~~l~~d~~-~~~ly~~D~~~~~I~r~~~~g----~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 147 (349)
T 3v64_C 73 ENAIALDFHHR-RELVFWSDVTLDRILRANLNG----SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 147 (349)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEEETTS----CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEEecc-ccEEEEEeccCCceEEEecCC----CCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence 45789999973 445555555678899999875 2222222222344578999886635555556678999999987
Q ss_pred CeEEEeec-CCCceeEEEecCCCCCEEEEEECC-CeEEEEECCCCccceeE-eccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380 315 EVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQ-GGLNIWDVRSRKSATEW-LLHEARINTIDFNPRNPNIMATSSTDGT 391 (536)
Q Consensus 315 ~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~d-g~i~i~d~~~~~~~~~~-~~h~~~i~~i~~~p~~~~~l~s~s~dg~ 391 (536)
.....+.. .-.....+++.|.+..++++-... +.|..+++.... ...+ .......+.|+++|++..++++-...+.
T Consensus 148 ~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~ 226 (349)
T 3v64_C 148 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV 226 (349)
T ss_dssp CSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCE
Confidence 65444432 335678999999763444444444 789999876433 2232 2233457899999877666666666788
Q ss_pred EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380 392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH 453 (536)
Q Consensus 392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~ 453 (536)
|..+|+.... ..............+++ ..+.++++-...+.|..++..+++....+.
T Consensus 227 I~~~~~dG~~----~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 227 IERANLDGSH----RKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEETTSCS----CEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEeCCCCc----eEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 9999987521 11111122345567777 345555565567788888876776666654
No 258
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.68 E-value=2.7e-05 Score=77.44 Aligned_cols=209 Identities=11% Similarity=0.016 Sum_probs=132.8
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
...+..++|++. ++.++++-...+.|..+++.. ......+.........+++.+.+..++++-...+.|.+.++.
T Consensus 115 ~~~~~gl~~d~~-~~~ly~~D~~~~~I~r~~~~g----~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d 189 (386)
T 3v65_B 115 LENAIALDFHHR-RELVFWSDVTLDRILRANLNG----SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD 189 (386)
T ss_dssp CSCEEEEEEETT-TTEEEEEETTTTEEEEEETTS----CCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT
T ss_pred CCccEEEEEecC-CCeEEEEeCCCCcEEEEecCC----CCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC
Confidence 456889999972 445555656678899999875 222222222233456788988663555555667889999987
Q ss_pred CCeEEEeec-CCCceeEEEecCCCCCEEEEEE-CC-CeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380 314 KEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGE-GQ-GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG 390 (536)
Q Consensus 314 ~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~-~d-g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg 390 (536)
......+.. .-.....+++.|.+ ..|+... .. +.|..+++................+.|+|+|++..++++-+..+
T Consensus 190 g~~~~~l~~~~l~~P~giavdp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~ 268 (386)
T 3v65_B 190 GAHRKVLLWQSLEKPRAIALHPME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH 268 (386)
T ss_dssp SCSCEEEECSSCSCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTT
T ss_pred CCceEEeecCCCCCCcEEEEEcCC-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCC
Confidence 654444333 33567899999877 4555544 44 68999987643322222233445789999987766666666678
Q ss_pred cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380 391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH 453 (536)
Q Consensus 391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~ 453 (536)
.|..+|+.... ..............+++ ..+.++++-...+.|..+|..+++....+.
T Consensus 269 ~I~~~d~dG~~----~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 269 VIERANLDGSH----RKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEEECTTSCS----CEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEEeCCCCe----eEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 89999986521 11111122345567777 345556666667889999876777666664
No 259
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.68 E-value=1.1e-05 Score=84.55 Aligned_cols=237 Identities=10% Similarity=0.067 Sum_probs=144.8
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCceEEeccCC----CCEEE-EEEecCCCCEEEEEE------CCCeEEEEECCCCeEEE
Q 009380 251 VVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL----GPISG-IVTQQYCLSKIFTSC------YDGLIRLMDAEKEVFDL 319 (536)
Q Consensus 251 l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~----~~V~~-l~~~~~~~~~l~s~s------~dg~I~vwd~~~~~~~~ 319 (536)
|++++.|+.|..+|..+ ++.+....... ..+.+ -... + ..++.++ .+|.|+.+|..+++...
T Consensus 124 V~v~t~dg~l~AlDa~T----G~~~W~~~~~~~~~~~~~~ssP~v~-~--g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W 196 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAET----GETVWKVENSDIKVGSTLTIAPYVV-K--DKVIIGSSGAELGVRGYLTAYDVKTGEQVW 196 (599)
T ss_dssp EEEECTTSEEEEEETTT----CCEEEEEECCCGGGTCBCCSCCEEE-T--TEEEECCBCGGGTCCCEEEEEETTTCCEEE
T ss_pred EEEEcCCCEEEEEECCC----CCEEEeecCCCCCccceeecCCEEE-C--CEEEEEecccccCCCCeEEEEECCCCcEEE
Confidence 77888899999999987 45554433211 01111 1111 3 4566655 38999999999998765
Q ss_pred eecCCCce---------------------------------------eEEEecCCCCCEEEEEECC--------------
Q 009380 320 VYSSEYAV---------------------------------------FSLSQQPNNVNTLYFGEGQ-------------- 346 (536)
Q Consensus 320 ~~~~~~~i---------------------------------------~~l~~~~~~~~~l~~g~~d-------------- 346 (536)
.+....+. ..+++.+.. .++++++.+
T Consensus 197 ~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~ 275 (599)
T 1w6s_A 197 RAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNK 275 (599)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCcc
Confidence 55432211 134555665 688888765
Q ss_pred --CeEEEEECCCCccceeEeccCC----------CeEEEEEe-cCCC--CEEEEEeCCCcEEEEeCCCCCCCCCCcce--
Q 009380 347 --GGLNIWDVRSRKSATEWLLHEA----------RINTIDFN-PRNP--NIMATSSTDGTACIWDLRSMATDKPEPMK-- 409 (536)
Q Consensus 347 --g~i~i~d~~~~~~~~~~~~h~~----------~i~~i~~~-p~~~--~~l~s~s~dg~i~iwdl~~~~~~~~~~~~-- 409 (536)
+.|..+|..+++.+..++.... ++. +... .++. ..++.++.+|.++++|..+++........
T Consensus 276 y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~ 354 (599)
T 1w6s_A 276 WTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDT 354 (599)
T ss_dssp TSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred ccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCC
Confidence 3899999999998877763211 121 2222 3342 46777889999999999887521000000
Q ss_pred ------ee-cccC--------------------------ceeEEEEccCCCeEEEEe-----------------------
Q 009380 410 ------VL-SHKR--------------------------AVHSAYFSPSGSSLATTS----------------------- 433 (536)
Q Consensus 410 ------~~-~~~~--------------------------~v~~l~~sp~g~~l~t~s----------------------- 433 (536)
+. .... .-..++++|+..++++..
T Consensus 355 ~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 434 (599)
T 1w6s_A 355 VNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGA 434 (599)
T ss_dssp CCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred cccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecc
Confidence 00 0000 012456777655554421
Q ss_pred ----------------CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccce
Q 009380 434 ----------------FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVA 497 (536)
Q Consensus 434 ----------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~ 497 (536)
.+|.|..||+.+++.+........... . .....+..+++++.|+.|+.||..+++.+.
T Consensus 435 ~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~--g----~~~tagg~vf~gt~dg~l~A~D~~tG~~lW 508 (599)
T 1w6s_A 435 TLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWG--G----TMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (599)
T ss_dssp EEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCS--B----CEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccC--c----ceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence 346788999988887776654321110 0 012256788889999999999999999998
Q ss_pred eccCC
Q 009380 498 TLQSP 502 (536)
Q Consensus 498 ~l~~~ 502 (536)
+++..
T Consensus 509 ~~~l~ 513 (599)
T 1w6s_A 509 KFKIP 513 (599)
T ss_dssp EEECS
T ss_pred EeeCC
Confidence 88643
No 260
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=4.7e-05 Score=83.23 Aligned_cols=237 Identities=12% Similarity=0.058 Sum_probs=147.6
Q ss_pred cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec----------cCCCCEEEEEEecCCCCEEEEEE
Q 009380 233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR----------THLGPISGIVTQQYCLSKIFTSC 302 (536)
Q Consensus 233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~----------~h~~~V~~l~~~~~~~~~l~s~s 302 (536)
....|.++...+ +|. |..|+.++-|..|+.... . ...+. .....|.++...+++ .|..|+
T Consensus 311 ~~~~v~~i~~D~--~g~-lWigt~~~Gl~~~~~~~~----~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~lWigt 380 (781)
T 3v9f_A 311 SNASARYIFQDS--FNN-IWIGTWGGGINFISNAPP----T-FHTWSYSPTQMNESSLSNKVVSSVCDDGQG--KLWIGT 380 (781)
T ss_dssp SSSCEEEEEECS--SCC-EEEEEBSSCEEEECSSCC----S-CEEEC----CCCSSCCSSSCEEEEEECTTS--CEEEEE
T ss_pred CCCeEEEEEEeC--CCC-EEEEecCCeEEEeCCCCC----c-ceeeccCccccccCCCCCcceEEEEEcCCC--CEEEEe
Confidence 356799999887 665 556777778888887652 1 11221 123568999887765 566777
Q ss_pred CCCeEEEEECCCCeEEEee----cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE--eccCCCeEEEEEe
Q 009380 303 YDGLIRLMDAEKEVFDLVY----SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW--LLHEARINTIDFN 376 (536)
Q Consensus 303 ~dg~I~vwd~~~~~~~~~~----~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~h~~~i~~i~~~ 376 (536)
.++-|.+||..++...... .....|.++...+++ .|.+|+.++.|..+|..+++..... ......|.++...
T Consensus 381 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d 458 (781)
T 3v9f_A 381 DGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYED 458 (781)
T ss_dssp BSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEEC
T ss_pred CCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEEC
Confidence 6777999998876554322 123578888888776 4667888778999998776532211 1234678998888
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-c-----ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcce
Q 009380 377 PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-S-----HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTS 450 (536)
Q Consensus 377 p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~-----~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~ 450 (536)
+++ .|..|+. +-|.+||..++. ..... . ....|.++...++|.+. .++.++-|..||..+.+. .
T Consensus 459 ~~g--~lwigt~-~Gl~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~-~ 528 (781)
T 3v9f_A 459 KNK--KIWIGTH-AGVFVIDLASKK-----VIHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPDMQLV-R 528 (781)
T ss_dssp TTS--EEEEEET-TEEEEEESSSSS-----CCEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTTCCEE-E
T ss_pred CCC--CEEEEEC-CceEEEeCCCCe-----EEecccCcccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCCCCeE-E
Confidence 766 3555555 458899987643 11111 1 13678999999888744 455544488898765432 2
Q ss_pred EEeccC-CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc
Q 009380 451 MIHHNN-QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR 494 (536)
Q Consensus 451 ~~~~~~-~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~ 494 (536)
.+.... .....+. .+...++|.+.+ |+.+|.|..||..+++
T Consensus 529 ~~~~~~~l~~~~i~--~i~~d~~g~lWi-~T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 529 KFNQYEGFCSNTIN--QIYRSSKGQMWL-ATGEGLVCFPSARNFD 570 (781)
T ss_dssp EECTTTTCSCSCEE--EEEECTTSCEEE-EETTEEEEESCTTTCC
T ss_pred EccCCCCCCCCeeE--EEEECCCCCEEE-EECCCceEEECCCCCc
Confidence 222111 1112222 344567776544 4446655888887764
No 261
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=0.00011 Score=80.24 Aligned_cols=260 Identities=11% Similarity=0.083 Sum_probs=157.0
Q ss_pred cccccccceEEecccccCccccc----------cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEE
Q 009380 208 TEKIEVGSCVDIGSLTLKPENIA----------RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYL 277 (536)
Q Consensus 208 ~~~~~~dg~v~lw~~~~~~~~~~----------~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~ 277 (536)
+|-+..++.|..++......... ......|.++...+ ++. |..|+.++-|..|+..+. ....
T Consensus 326 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g~-lWigt~~~Gl~~~~~~~~-----~~~~ 397 (781)
T 3v9f_A 326 IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG--QGK-LWIGTDGGGINVFENGKR-----VAIY 397 (781)
T ss_dssp EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT--TSC-EEEEEBSSCEEEEETTEE-----EEEC
T ss_pred EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC--CCC-EEEEeCCCcEEEEECCCC-----eEEE
Confidence 44455566677776533221111 11245789998877 665 455666667888987642 1111
Q ss_pred e----ccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec---CCCceeEEEecCCCCCEEEEEECCCeEE
Q 009380 278 F----RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS---SEYAVFSLSQQPNNVNTLYFGEGQGGLN 350 (536)
Q Consensus 278 ~----~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~l~~g~~dg~i~ 350 (536)
+ ......|.++...+++ .|..|+.++-|..+|..++.+..... ....|.++...+++ .|.+|+. +.|.
T Consensus 398 ~~~~~~~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lwigt~-~Gl~ 472 (781)
T 3v9f_A 398 NKENRELLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNK--KIWIGTH-AGVF 472 (781)
T ss_dssp C-----CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTS--EEEEEET-TEEE
T ss_pred ccCCCCCCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCC--CEEEEEC-CceE
Confidence 1 1234568888887765 46667777779999998887665432 34678888888776 5777777 5799
Q ss_pred EEECCCCccceeEecc-----CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-c---ccCceeEEE
Q 009380 351 IWDVRSRKSATEWLLH-----EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-S---HKRAVHSAY 421 (536)
Q Consensus 351 i~d~~~~~~~~~~~~h-----~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~---~~~~v~~l~ 421 (536)
.||..+++........ ...|.++...+++ . |..|+.++-|..||..+.. ..... . ....|.++.
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~-----~~~~~~~~~l~~~~i~~i~ 545 (781)
T 3v9f_A 473 VIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG-R-FWIGTFGGGVGIYTPDMQL-----VRKFNQYEGFCSNTINQIY 545 (781)
T ss_dssp EEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC-C-EEEEESSSCEEEECTTCCE-----EEEECTTTTCSCSCEEEEE
T ss_pred EEeCCCCeEEecccCcccccccceeEEEEEcCCC-C-EEEEEcCCCEEEEeCCCCe-----EEEccCCCCCCCCeeEEEE
Confidence 9998876643332222 3678999988876 3 4445544448888876531 11111 1 245788999
Q ss_pred EccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc-CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 422 FSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN-NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 422 ~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
..++|.+.+ ++.+|.|..||..+.+. ..+... ......+ ..+..+++|.+. .++.+| |..|+..+.
T Consensus 546 ~d~~g~lWi-~T~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i--~~i~~d~~g~lW-~~t~~G-l~~~~~~~~ 612 (781)
T 3v9f_A 546 RSSKGQMWL-ATGEGLVCFPSARNFDY-QVFQRKEGLPNTHI--RAISEDKNGNIW-ASTNTG-ISCYITSKK 612 (781)
T ss_dssp ECTTSCEEE-EETTEEEEESCTTTCCC-EEECGGGTCSCCCC--CEEEECSSSCEE-EECSSC-EEEEETTTT
T ss_pred ECCCCCEEE-EECCCceEEECCCCCcE-EEccccCCCCCceE--EEEEECCCCCEE-EEcCCc-eEEEECCCC
Confidence 998888554 44467558898876542 233221 1111222 234556777654 444455 777777665
No 262
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.60 E-value=0.00017 Score=69.37 Aligned_cols=234 Identities=12% Similarity=0.047 Sum_probs=138.8
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC----CeEEEeec-CC
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK----EVFDLVYS-SE 324 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~----~~~~~~~~-~~ 324 (536)
+|+.+.. ..|+..++.. ......+ .....+..++|++.+..++++-...+.|..+++.+ .....+.. .-
T Consensus 3 ~ll~~~~-~~I~~i~~~~----~~~~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDR----SEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTS----CCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCC----cceEehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 4444443 5689999886 2333333 33456789999987624444545568999999886 22222332 22
Q ss_pred CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC-CcEEEEeCCCCCCC
Q 009380 325 YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD-GTACIWDLRSMATD 403 (536)
Q Consensus 325 ~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-g~i~iwdl~~~~~~ 403 (536)
.....+++.+.+.+++++-...+.|.++|+........+.........+++.|.+..++++.... +.|..+++...
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~--- 153 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--- 153 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC---
Confidence 45678898876534555556678999999874433222333345778999999775555555443 68888887642
Q ss_pred CCCcceee-cccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEEecc-CCCCceeeeeEEEEcCCCCEEEEEc
Q 009380 404 KPEPMKVL-SHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMIHHN-NQTGRWISSFRAIWGWDDSCVFIGN 480 (536)
Q Consensus 404 ~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~l~~gs 480 (536)
....+. ..-...+.++++|++..|+.+. ..+.|..+|+.. .....+... ...... .. +++. .+.++++-.
T Consensus 154 --~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P-~g--iav~-~~~ly~~d~ 226 (316)
T 1ijq_A 154 --DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHP-FS--LAVF-EDKVFWTDI 226 (316)
T ss_dssp --CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSE-EE--EEEE-TTEEEEEET
T ss_pred --CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCc-EE--EEEE-CCEEEEEEC
Confidence 111121 2334678999999766665554 567899999864 333444221 112222 22 3333 345555666
Q ss_pred CCCcEEEEcCCccccceec
Q 009380 481 MTRTVEVISPAQRRSVATL 499 (536)
Q Consensus 481 ~dg~I~v~d~~~~~~~~~l 499 (536)
..+.|..++..+++.+..+
T Consensus 227 ~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 227 INEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TTTEEEEEETTTCCCCEEE
T ss_pred CCCeEEEEeCCCCcceEEE
Confidence 6688998887666554444
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.59 E-value=7.5e-05 Score=73.06 Aligned_cols=244 Identities=9% Similarity=-0.007 Sum_probs=145.7
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEE-EEECCCeEEEEECCC
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIF-TSCYDGLIRLMDAEK 314 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~-s~s~dg~I~vwd~~~ 314 (536)
..+|.+..+ +. +|+.+. ...|+..++.. .....+......+..++|++.. ..|+ +-...+.|..+++..
T Consensus 35 ~~~C~~~~~--~~-~ll~~~-~~~I~~i~~~g-----~~~~~~~~~~~~~~~l~~d~~~-~~ly~~D~~~~~I~r~~~~g 104 (349)
T 3v64_C 35 RRSCKALGP--EP-VLLFAN-RIDIRQVLPHR-----SEYTLLLNNLENAIALDFHHRR-ELVFWSDVTLDRILRANLNG 104 (349)
T ss_dssp SSCEEESSS--CC-EEEEEC-BSCEEEECTTS-----CCEEEEECSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTS
T ss_pred CCccccccc--Cc-eeEeec-ccceEEEeCCC-----CeeEEeecCCCceEEEEEeccc-cEEEEEeccCCceEEEecCC
Confidence 344555444 43 444433 34577777764 2233333334558899999876 4555 445678999999987
Q ss_pred CeEEEeec-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC-CcE
Q 009380 315 EVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD-GTA 392 (536)
Q Consensus 315 ~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-g~i 392 (536)
.....+.. .......+++.+.+.+++++-...+.|.++++........+.........|++.|.++.++++-... +.|
T Consensus 105 ~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 105 SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence 65444433 2345678899876645555555678999999875433222333345678999999775666666555 788
Q ss_pred EEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEc
Q 009380 393 CIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG 470 (536)
Q Consensus 393 ~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s 470 (536)
..+++.... ...+. ..-...+.++++|++..|+.+ ...+.|..+|+... ....+.... .... .. +++
T Consensus 185 ~r~~~dG~~-----~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~-~~~~~~~~~-~~~P-~g--iav- 253 (349)
T 3v64_C 185 EASSMDGSG-----RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQG-LPHP-FA--ITV- 253 (349)
T ss_dssp EEEETTSCS-----CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSS-CSSE-EE--EEE-
T ss_pred EEEeCCCCC-----cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC-ceEEEEeCC-CCCc-eE--EEE-
Confidence 888876521 11111 223457899999866655555 45678999998643 333332111 1111 22 333
Q ss_pred CCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380 471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 471 ~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~ 500 (536)
..+..+++-...+.|..++..+++.+..+.
T Consensus 254 ~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 254 FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 244455555566788888866665554443
No 264
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.57 E-value=4.7e-06 Score=89.18 Aligned_cols=273 Identities=12% Similarity=0.008 Sum_probs=147.1
Q ss_pred EEEEEecCCccEEEEEeCCC-----------cEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEEC-CC
Q 009380 239 QMKFLPCSDVRMVVAGSKLG-----------NITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCY-DG 305 (536)
Q Consensus 239 ~v~~~p~~~~~~l~tg~~dg-----------~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~-dg 305 (536)
++++.|. ++++++.|+.++ .+.+||..+.. ...+..+. .+.....++++..++ .+++.|+. +.
T Consensus 190 ~~av~~~-~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~--w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~ 265 (656)
T 1k3i_A 190 AAAIEPT-SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI--VSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAK 265 (656)
T ss_dssp EEEEETT-TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC--BCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTT
T ss_pred eEEEEec-CCEEEEEecccccccccCCCCeEEEEEEeCCCCc--EEeCcccCCCCCCccccccCCCCC-CEEEeCCCCCC
Confidence 5566652 667888887543 57889988743 23333332 233344567788887 88888884 56
Q ss_pred eEEEEECCCCeEEEeecC--CCceeEEEecCCCCCEEEEEE-CC-----CeEEEEECCCCccceeE----eccCCCeEEE
Q 009380 306 LIRLMDAEKEVFDLVYSS--EYAVFSLSQQPNNVNTLYFGE-GQ-----GGLNIWDVRSRKSATEW----LLHEARINTI 373 (536)
Q Consensus 306 ~I~vwd~~~~~~~~~~~~--~~~i~~l~~~~~~~~~l~~g~-~d-----g~i~i~d~~~~~~~~~~----~~h~~~i~~i 373 (536)
.+.+||..+......... ...-.+++..+++ .++++|+ .+ ..+.+||..+++-...- ......-...
T Consensus 266 ~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~ 344 (656)
T 1k3i_A 266 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG 344 (656)
T ss_dssp CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred ceEEecCcCCceeECCCCCccccccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc
Confidence 899999998876654321 1122345556666 7888888 34 46999999876432110 0000000001
Q ss_pred EEecCCCCEEEEEeCCC---------cEEEEeCCCCCCCCCCcceeeccc---------CceeEEEEcc-CCCeEEEEeC
Q 009380 374 DFNPRNPNIMATSSTDG---------TACIWDLRSMATDKPEPMKVLSHK---------RAVHSAYFSP-SGSSLATTSF 434 (536)
Q Consensus 374 ~~~p~~~~~l~s~s~dg---------~i~iwdl~~~~~~~~~~~~~~~~~---------~~v~~l~~sp-~g~~l~t~s~ 434 (536)
.+..++ ++++.|+.+| .+..||..+.. .......+. ..-.++.|.. ++++++.|+.
T Consensus 345 ~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~----w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~ 419 (656)
T 1k3i_A 345 LYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSG----DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 419 (656)
T ss_dssp GGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTC----EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred eeecCC-ceEEEECCCCcEEEecCccceeeeecCCcc----eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence 111222 4445554443 46788887642 111111111 1224455544 6778888875
Q ss_pred CC-----------cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-----------CcEEEEcCCc
Q 009380 435 DD-----------TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-----------RTVEVISPAQ 492 (536)
Q Consensus 435 dg-----------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----------g~I~v~d~~~ 492 (536)
++ .|.+||..+..-........+..+... .++..++++++++|+.+ ..+.+||..+
T Consensus 420 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~--~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 420 PDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFH--TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp SSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSC--EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred CCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccC--CeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence 43 577888765543222101112222111 23456799999999854 4689999877
Q ss_pred ccc--ceeccCCceeeeeeeEeecCCCCCEEEEEcc
Q 009380 493 RRS--VATLQSPYISAIPCRFHAHPHQVGTLAGATG 526 (536)
Q Consensus 493 ~~~--~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~ 526 (536)
.+- +..+...... . ......| ++.+++.|+.
T Consensus 498 ~~W~~~~~~~~~R~~-h-s~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 498 DTFYKQNPNSIVRVY-H-SISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp TEEEECCCCSSCCCT-T-EEEEECT-TSCEEEEECC
T ss_pred CceeecCCCCCcccc-c-cHhhcCC-CcEEEecCCC
Confidence 542 1111111110 1 1122334 5688888884
No 265
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.56 E-value=0.00022 Score=71.16 Aligned_cols=235 Identities=11% Similarity=0.048 Sum_probs=142.7
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEE-ECCCeEEEEECCCC----eEEEeec-C
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTS-CYDGLIRLMDAEKE----VFDLVYS-S 323 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~-s~dg~I~vwd~~~~----~~~~~~~-~ 323 (536)
+|+.+. ...|+..++.. .. ...+......+..|+|++.. ..|+.+ ...+.|+.+++... ....+.. .
T Consensus 85 ~ll~~~-~~~I~~i~l~~----~~-~~~~~~~~~~~~~l~~d~~~-~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~ 157 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDR----SE-YTSLIPNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 157 (400)
T ss_dssp EEEEEE-TTEEEEECTTS----CS-CEEEECSCSCEEEEEEETTT-TEEEEEETTTTEEEEEEC------CCCEEEECSS
T ss_pred eeEEec-cceeEEEccCC----cc-eeEeccccCcceEEeeeecc-CceEEEecCCCeEEEEEcccCCCCCcceEEEeCC
Confidence 444444 36788888875 22 23333445678899999876 555544 45788999998762 2233333 3
Q ss_pred CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC-CCcEEEEeCCCCCC
Q 009380 324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST-DGTACIWDLRSMAT 402 (536)
Q Consensus 324 ~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~-dg~i~iwdl~~~~~ 402 (536)
-.....+++.+.+.+++++-...+.|.+.++........+.........|++.|.++.++++-.. .+.|...++...
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-- 235 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-- 235 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC--
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC--
Confidence 45678899987553555555567899999987554333333344568899999976555555433 378888888752
Q ss_pred CCCCcceee-cccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc
Q 009380 403 DKPEPMKVL-SHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN 480 (536)
Q Consensus 403 ~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs 480 (536)
....+. ..-...+.|++++++..|+.+. ..+.|..+|+........+.......... .++.. .+.++++-.
T Consensus 236 ---~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~---gl~v~-~~~lywtd~ 308 (400)
T 3p5b_L 236 ---DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF---SLAVF-EDKVFWTDI 308 (400)
T ss_dssp ---SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEE---EEEEE-TTEEEEEES
T ss_pred ---ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCE---EEEEe-CCEEEEecC
Confidence 122222 2335678999998776666654 56789999986543333332211222222 23332 334555656
Q ss_pred CCCcEEEEcCCccccceecc
Q 009380 481 MTRTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 481 ~dg~I~v~d~~~~~~~~~l~ 500 (536)
..+.|..++..+++.+..+.
T Consensus 309 ~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 309 INEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp SSCSEEEEESSSCCCCEEEE
T ss_pred CCCeEEEEEcCCCCceEEEe
Confidence 66889999977776665554
No 266
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.56 E-value=3.3e-05 Score=81.04 Aligned_cols=239 Identities=10% Similarity=0.007 Sum_probs=146.1
Q ss_pred ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC----CEE-EEEEecC---CCCEEEEEE------CCCeEEEEECC
Q 009380 248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG----PIS-GIVTQQY---CLSKIFTSC------YDGLIRLMDAE 313 (536)
Q Consensus 248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~----~V~-~l~~~~~---~~~~l~s~s------~dg~I~vwd~~ 313 (536)
+..|+.++.++.|..+|..+ ++.+..+..... .+. .-....+ +...+++++ .++.|..+|..
T Consensus 117 ~~~v~~~t~dg~l~AlD~~T----G~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~ 192 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNT----GKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPD 192 (582)
T ss_dssp TTEEEEEETTTEEEEEESSS----CCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTT
T ss_pred CCEEEEEeCCCEEEEEECCC----CCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECC
Confidence 34677788899999999988 555544432210 111 1111111 211666665 37899999999
Q ss_pred CCeEEEeecCCCc------------------------------------------eeEEEecCCCCCEEEEEEC------
Q 009380 314 KEVFDLVYSSEYA------------------------------------------VFSLSQQPNNVNTLYFGEG------ 345 (536)
Q Consensus 314 ~~~~~~~~~~~~~------------------------------------------i~~l~~~~~~~~~l~~g~~------ 345 (536)
+++.......... -..+++.|.. .++++++.
T Consensus 193 tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~-g~vyv~~gn~~~~~ 271 (582)
T 1flg_A 193 TGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET-NTIIVGAGNPGPWN 271 (582)
T ss_dssp TCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT-TEEEEEECCBSSSC
T ss_pred CCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCC-CEEEEeCCCCCccc
Confidence 9876654432110 0124555655 67887773
Q ss_pred --------------C----CeEEEEECCCCccceeEec--cC--------CCeEEEEEe-cCCC--CEEEEEeCCCcEEE
Q 009380 346 --------------Q----GGLNIWDVRSRKSATEWLL--HE--------ARINTIDFN-PRNP--NIMATSSTDGTACI 394 (536)
Q Consensus 346 --------------d----g~i~i~d~~~~~~~~~~~~--h~--------~~i~~i~~~-p~~~--~~l~s~s~dg~i~i 394 (536)
| +.|..+|..+++.+..++. |. .++. +... .++. .+++.++.+|.+++
T Consensus 272 ~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~ 350 (582)
T 1flg_A 272 TWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYV 350 (582)
T ss_dssp GGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEE
T ss_pred CcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEE
Confidence 2 5899999999999877753 32 1121 1221 3342 37888999999999
Q ss_pred EeCCCCCCCCCCcceeeccc---------------------------------------------CceeEEEEccCCCeE
Q 009380 395 WDLRSMATDKPEPMKVLSHK---------------------------------------------RAVHSAYFSPSGSSL 429 (536)
Q Consensus 395 wdl~~~~~~~~~~~~~~~~~---------------------------------------------~~v~~l~~sp~g~~l 429 (536)
+|..+++.. ....... ..-..++++|+..++
T Consensus 351 lD~~tG~~l----w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~ 426 (582)
T 1flg_A 351 VDRSNGKLQ----NAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLF 426 (582)
T ss_dssp EETTTCCEE----EEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCE
T ss_pred EECCCCCEe----cccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEE
Confidence 999887521 1000000 001245677765555
Q ss_pred EEEe---------------------------------CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEE
Q 009380 430 ATTS---------------------------------FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCV 476 (536)
Q Consensus 430 ~t~s---------------------------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 476 (536)
++.. .+|.|..||+.+++.+........... .. ....+.++
T Consensus 427 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~--g~----~~tagglv 500 (582)
T 1flg_A 427 YVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWA--GV----LATAGNLV 500 (582)
T ss_dssp EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCS--CC----EEETTTEE
T ss_pred EEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcc--cc----eEeCCCEE
Confidence 5432 257899999999988777654322110 11 11246688
Q ss_pred EEEcCCCcEEEEcCCccccceeccCC
Q 009380 477 FIGNMTRTVEVISPAQRRSVATLQSP 502 (536)
Q Consensus 477 ~~gs~dg~I~v~d~~~~~~~~~l~~~ 502 (536)
++|+.|+.++.||..+++.+.++...
T Consensus 501 f~g~~dg~l~A~D~~tG~~lW~~~~~ 526 (582)
T 1flg_A 501 FTGTGDGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EEECCCCcEEEEECCCCCEEEEecCC
Confidence 88999999999999999999888754
No 267
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.55 E-value=1.1e-05 Score=73.56 Aligned_cols=193 Identities=8% Similarity=0.022 Sum_probs=123.9
Q ss_pred eEEeccCCC--CEEEEEEecCCCCEEEEEECC--CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEE
Q 009380 275 IYLFRTHLG--PISGIVTQQYCLSKIFTSCYD--GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLN 350 (536)
Q Consensus 275 ~~~~~~h~~--~V~~l~~~~~~~~~l~s~s~d--g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~ 350 (536)
+..+ +|.. -...+.|++ + .++.+.+.+ +.|+++|+.+++...................+..+......++.+.
T Consensus 12 ~~~~-phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 12 VKRY-PHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEE-ECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEc-CCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence 3444 5653 467899986 3 566666665 4899999999988776655544443333333423444444678999
Q ss_pred EEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--ccc---CceeEEEEccC
Q 009380 351 IWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SHK---RAVHSAYFSPS 425 (536)
Q Consensus 351 i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~~---~~v~~l~~sp~ 425 (536)
+||..+.+.+.++...... ..++ +++..++++ ..++.|.++|..+.+ ....+. .+. ..++.+.|. +
T Consensus 89 v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vS-dgs~~l~~iDp~t~~----~~~~I~V~~~g~~~~~lNeLe~~-~ 159 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPGEG-WALT--SDDSHLYMS-DGTAVIRKLDPDTLQ----QVGSIKVTAGGRPLDNLNELEWV-N 159 (243)
T ss_dssp EEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEE-CSSSEEEEECTTTCC----EEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEE-CCCCeEEEEeCCCCe----EEEEEEEccCCcccccceeeEEe-C
Confidence 9999999999888743322 3444 456455554 458899999998864 221211 222 244566665 6
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCcceEEeccC----------CCCceeeeeEEEEcCCCCEEEEEcC
Q 009380 426 GSSLATTSFDDTIGIWSGVNFENTSMIHHNN----------QTGRWISSFRAIWGWDDSCVFIGNM 481 (536)
Q Consensus 426 g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~s~~g~~l~~gs~ 481 (536)
|..++..-.++.|.+.|..+++.+..+.... ...... .-++|+|+++.|++.+.
T Consensus 160 G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vl--NGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 160 GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVL--NGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCE--EEEEEETTTTEEEEEET
T ss_pred CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCce--EEEEEcCCCCEEEEECC
Confidence 7655555568899999999999888886331 112222 23779998777666654
No 268
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.54 E-value=1.7e-05 Score=72.94 Aligned_cols=178 Identities=12% Similarity=0.062 Sum_probs=120.4
Q ss_pred eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe
Q 009380 237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV 316 (536)
Q Consensus 237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~ 316 (536)
...+.|+ ++.++.+.+.+|.|+++|+.+ ++.+..+ - ..........+++..+....-.++.+.+||..+.+
T Consensus 57 tqGL~~~---~~~Ly~stG~~g~v~~iD~~T----gkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 57 TQGLVFH---QGHFFESTGHQGTLRQLSLES----AQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp EEEEEEE---TTEEEEEETTTTEEEECCSSC----SSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTE
T ss_pred cceEEEE---CCEEEEEcCCCCEEEEEECCC----CcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCc
Confidence 4577776 457778888889999999998 4555544 2 22333322333442455555568999999999988
Q ss_pred EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC-----CCeEEEEEecCCCCEEEEEeCCCc
Q 009380 317 FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE-----ARINTIDFNPRNPNIMATSSTDGT 391 (536)
Q Consensus 317 ~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-----~~i~~i~~~p~~~~~l~s~s~dg~ 391 (536)
....+.....-+.+++ ++ ..|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +| .+++..-.+..
T Consensus 128 ~~~ti~~~~eGwGLt~--Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~ 202 (268)
T 3nok_A 128 RERTTRYSGEGWGLCY--WN-GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHSSD 202 (268)
T ss_dssp EEEEEECSSCCCCEEE--ET-TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTCSE
T ss_pred EEEEEeCCCceeEEec--CC-CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCCCe
Confidence 7776665544456664 45 567777778899999999998887776322 245778887 45 56666656789
Q ss_pred EEEEeCCCCCCCCCCcceeec--------------ccCceeEEEEccCCCeEEEEe
Q 009380 392 ACIWDLRSMATDKPEPMKVLS--------------HKRAVHSAYFSPSGSSLATTS 433 (536)
Q Consensus 392 i~iwdl~~~~~~~~~~~~~~~--------------~~~~v~~l~~sp~g~~l~t~s 433 (536)
|.+.|..+++ +..... ...-.+.|+|+|+++.|++.+
T Consensus 203 I~vIDp~TG~-----V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 203 VLEIDPATGT-----VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEECTTTCB-----EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEEeCCCCc-----EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999874 222221 123568999999776666655
No 269
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.54 E-value=0.0001 Score=73.24 Aligned_cols=234 Identities=8% Similarity=-0.037 Sum_probs=142.1
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC-CCcee
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS-EYAVF 328 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~-~~~i~ 328 (536)
+|+.+. ...|+.+++.. ... ..+......+..++|.+.+..++++-...+.|..+++.......+... .....
T Consensus 89 ~l~~~~-~~~I~~i~~~~----~~~-~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~ 162 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHR----SEY-TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG 162 (386)
T ss_dssp EEEEEC-BSCEEEECTTS----CCC-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCC
T ss_pred eeEeec-CccceeeccCC----CcE-EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCcc
Confidence 444443 35788888874 222 233333456889999987624444555678999999987765444332 24567
Q ss_pred EEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC-CcEEEEeCCCCCCCCCCc
Q 009380 329 SLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD-GTACIWDLRSMATDKPEP 407 (536)
Q Consensus 329 ~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-g~i~iwdl~~~~~~~~~~ 407 (536)
.+++.+.+.+++++-...+.|.++++........+.........|++.|.+..++++-... +.|..+++... ..
T Consensus 163 glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-----~~ 237 (386)
T 3v65_B 163 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-----GR 237 (386)
T ss_dssp CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-----SC
T ss_pred EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-----Cc
Confidence 7888876645555555677899988864433323333345678999999776666665555 78888887652 11
Q ss_pred ceee-cccCceeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380 408 MKVL-SHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV 485 (536)
Q Consensus 408 ~~~~-~~~~~v~~l~~sp~g~~l~t~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I 485 (536)
..+. ..-...+.|+|+|++..|+.+ ...+.|..+|+.... ...+.... .... . .+++ ..+.++++-...+.|
T Consensus 238 ~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~-~~~P-~--giav-~~~~ly~td~~~~~V 311 (386)
T 3v65_B 238 RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVISQG-LPHP-F--AITV-FEDSLYWTDWHTKSI 311 (386)
T ss_dssp EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS-CEEEECSS-CSSE-E--EEEE-ETTEEEEEETTTTEE
T ss_pred EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe-eEEEEECC-CCCc-e--EEEE-ECCEEEEeeCCCCeE
Confidence 2222 233457899999866555554 456789999986433 33332211 1111 2 2333 244455666667889
Q ss_pred EEEcCCccccceecc
Q 009380 486 EVISPAQRRSVATLQ 500 (536)
Q Consensus 486 ~v~d~~~~~~~~~l~ 500 (536)
..++..+++.+..+.
T Consensus 312 ~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 312 NSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEETTTCCSCEEEE
T ss_pred EEEECCCCcceEEEc
Confidence 999866666655554
No 270
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=3.8e-05 Score=77.45 Aligned_cols=247 Identities=9% Similarity=0.058 Sum_probs=135.9
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-C----eEEEE
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-G----LIRLM 310 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-g----~I~vw 310 (536)
....|+++|..++. |.++...+.|+.+|+.. ..+..+.........|+|++++ ++|+.+... + .+.++
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~-----~~v~~~~~~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEK-----EYVSTVYSGLSKVRTICWTHEA-DSMIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBTEEEEEEETTT-----TEEEEEECCCSCEEEEEECTTS-SEEEEEECCSCTTSEEEEEE
T ss_pred CCCEEEECCCCCCe-EEEEeCCCcEEEEECCC-----CEEEEEecCCCCcceEEEeCCC-CEEEEEeCCCCcccceEEEE
Confidence 45788999610344 44444447889999874 3344444455668899999998 766666542 2 34444
Q ss_pred ECCCCeE-EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec-cCCCeEEEEEecCCCCEEEEEeC
Q 009380 311 DAEKEVF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL-HEARINTIDFNPRNPNIMATSST 388 (536)
Q Consensus 311 d~~~~~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-h~~~i~~i~~~p~~~~~l~s~s~ 388 (536)
+...... ............++++|++..++++-..++.|..+|...+........ .......|+|+|++..++++-..
T Consensus 211 ~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 211 TRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp EGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred eCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 4332211 012222345678889994436666655778999999886654222221 22456889999988435666667
Q ss_pred CCcEEEEeCCCCCCCCCCcceeecc---------------cCcee-EEEEc--------cCCCeEEEEeCCCcEEEEeCC
Q 009380 389 DGTACIWDLRSMATDKPEPMKVLSH---------------KRAVH-SAYFS--------PSGSSLATTSFDDTIGIWSGV 444 (536)
Q Consensus 389 dg~i~iwdl~~~~~~~~~~~~~~~~---------------~~~v~-~l~~s--------p~g~~l~t~s~dg~I~iwd~~ 444 (536)
.+.|..++..........+..+.+. -.... .++.. ++|.++++-...+.|+.++.
T Consensus 291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~- 369 (430)
T 3tc9_A 291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP- 369 (430)
T ss_dssp TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-
T ss_pred CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-
Confidence 7889998865321000001111110 01122 45553 34666666566778999984
Q ss_pred CCCcceEEecc--CCCC----------ceeeeeEEEEcCC-CCEEEEEcCCCcEEEEcC
Q 009380 445 NFENTSMIHHN--NQTG----------RWISSFRAIWGWD-DSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 445 ~~~~~~~~~~~--~~~~----------~~~~~~~~~~s~~-g~~l~~gs~dg~I~v~d~ 490 (536)
++......... ...+ .......++++++ +.++++-..++.|+.+++
T Consensus 370 ~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 370 QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 44333222220 0001 1112333667774 545555555567777664
No 271
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.52 E-value=4.4e-05 Score=80.03 Aligned_cols=271 Identities=11% Similarity=0.101 Sum_probs=154.4
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCC---------EEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGP---------ISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV 320 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~---------V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~ 320 (536)
.|++++.++.|.-+|..+ ++.+-.+...... ...+.+ .+ ..++.++.|+.|..+|..+++....
T Consensus 70 ~vyv~~~~~~v~AlD~~t----G~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~-~~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 70 VIYVTASYSRLFALDAKT----GKRLWTYNHRLPDDIRPCCDVVNRGAAI--YG-DKVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp EEEEEETTTEEEEEESSS----CCEEEEEECCCCTTCCCSSCSCCCCCEE--ET-TEEEEEETTTEEEEEESSSCCEEEE
T ss_pred EEEEEcCCCCEEEEECCC----CcEEEEEcCCCCcccccccccCCCccEE--EC-CEEEEEeCCCEEEEEECCCCCEEee
Confidence 344444434488888876 4555444432211 011222 23 6888899999999999999987655
Q ss_pred ecCCC-----ceeE--EEecC--CCCCEEEEEEC------CCeEEEEECCCCccceeEeccCCCe---------------
Q 009380 321 YSSEY-----AVFS--LSQQP--NNVNTLYFGEG------QGGLNIWDVRSRKSATEWLLHEARI--------------- 370 (536)
Q Consensus 321 ~~~~~-----~i~~--l~~~~--~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~~~i--------------- 370 (536)
+.... .+.+ +.... ++...+++++. +|.|..+|..+++.+.........+
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence 43221 1111 11111 12116777653 7899999999998876543211000
Q ss_pred --------------------------EEEEEecCCCCEEEEEeC--------------------C----CcEEEEeCCCC
Q 009380 371 --------------------------NTIDFNPRNPNIMATSST--------------------D----GTACIWDLRSM 400 (536)
Q Consensus 371 --------------------------~~i~~~p~~~~~l~s~s~--------------------d----g~i~iwdl~~~ 400 (536)
..+++.|.. .+++.+.. | +.|..+|..++
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~-g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG 301 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET-NTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSG 301 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT-TEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTC
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCC-CEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCC
Confidence 124555655 45555542 2 57999999987
Q ss_pred CCCCCCcceee--cccC-------ceeEEEEc-cCCC---eEEEEeCCCcEEEEeCCCCCcceEEeccCC----------
Q 009380 401 ATDKPEPMKVL--SHKR-------AVHSAYFS-PSGS---SLATTSFDDTIGIWSGVNFENTSMIHHNNQ---------- 457 (536)
Q Consensus 401 ~~~~~~~~~~~--~~~~-------~v~~l~~s-p~g~---~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~---------- 457 (536)
+ ..-... .|.. ...-+... .+|+ .++.++.+|.++++|..+++.+..+.....
T Consensus 302 ~----~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~ 377 (582)
T 1flg_A 302 E----VKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLK 377 (582)
T ss_dssp C----EEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTT
T ss_pred C----EEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccccccc
Confidence 5 222221 2211 11112222 4674 788899999999999999988766543210
Q ss_pred CCceee-------------------ee-----------EEEEcCCCCEEEEEc---------------------------
Q 009380 458 TGRWIS-------------------SF-----------RAIWGWDDSCVFIGN--------------------------- 480 (536)
Q Consensus 458 ~~~~~~-------------------~~-----------~~~~s~~g~~l~~gs--------------------------- 480 (536)
.++.+. .. .++++|+...+++..
T Consensus 378 ~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 457 (582)
T 1flg_A 378 TGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRI 457 (582)
T ss_dssp TCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred CCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceee
Confidence 011000 00 134566555555432
Q ss_pred ------CCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 481 ------MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 481 ------~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
.+|.|..||+.+++.+.+...... .....+.. .+.+++.|+.||.|+.||.+
T Consensus 458 ~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t---agglvf~g~~dg~l~A~D~~ 515 (582)
T 1flg_A 458 KRMYDDHVGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT---AGNLVFTGTGDGYFKAFDAK 515 (582)
T ss_dssp EESCSSCSEEEEEECTTTCCEEEEEEESSC-CCSCCEEE---TTTEEEEECTTSEEEEEETT
T ss_pred cCCCCCCcceEEEEECCCCCEEEEecCCCC-CcccceEe---CCCEEEEECCCCcEEEEECC
Confidence 257899999999998877654221 11111222 25788889999999999863
No 272
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.49 E-value=5.1e-05 Score=76.52 Aligned_cols=244 Identities=13% Similarity=0.093 Sum_probs=145.4
Q ss_pred CEEEEEEecC-CCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC-----eEEEEECCCC
Q 009380 284 PISGIVTQQY-CLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG-----GLNIWDVRSR 357 (536)
Q Consensus 284 ~V~~l~~~~~-~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg-----~i~i~d~~~~ 357 (536)
....|+|.|+ ....|+.+...+.|+.+|+.++....+.........+++.+++ + |+++...+ .+..++...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG-~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNG-D-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTC-C-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCC-C-EEEEcCCCCcccceEEEEECCCC
Confidence 3568999985 2256666665589999999888887776666678999999998 5 55555422 2344443222
Q ss_pred ccc-eeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--cccCceeEEEEccCCCeEEEE-e
Q 009380 358 KSA-TEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SHKRAVHSAYFSPSGSSLATT-S 433 (536)
Q Consensus 358 ~~~-~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~t~-s 433 (536)
... ..+. .......++++|++++++++-..++.|+.+|..++. ....+. +....-..++|+|+|++|+.+ .
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~----~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT----LTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC----EEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe----EEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence 111 1222 234556788999444666666667889999987542 101111 122233469999999855554 4
Q ss_pred CCCcEEEEeCCC--CCc--ceEEecc-CCCC---------ceeeeeEEEE---------cCCCCEEEEEcCCCcEEEEcC
Q 009380 434 FDDTIGIWSGVN--FEN--TSMIHHN-NQTG---------RWISSFRAIW---------GWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 434 ~dg~I~iwd~~~--~~~--~~~~~~~-~~~~---------~~~~~~~~~~---------s~~g~~l~~gs~dg~I~v~d~ 490 (536)
..+.|..++... +.. ...+... ...+ .......+++ ..+|.++++-..++.|+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 567899987652 221 1222111 1100 0111223566 667777777777788999985
Q ss_pred CccccceeccCCc--------e--------eeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 491 AQRRSVATLQSPY--------I--------SAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 491 ~~~~~~~~l~~~~--------~--------~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
++. +.++.+.. . -..+..+++.|.++.++++=...+.|+.+++|
T Consensus 373 -~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 -EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 342 33332210 0 12255678885566777777778889888764
No 273
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.49 E-value=0.00024 Score=68.37 Aligned_cols=212 Identities=8% Similarity=0.005 Sum_probs=130.7
Q ss_pred CCceEEEEEEecCCc-cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380 234 PGRITQMKFLPCSDV-RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA 312 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~-~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~ 312 (536)
-..+..++|++ .+ .++++-...+.|..+++............+.........+++.+.+..++++-...+.|.++++
T Consensus 29 ~~~p~g~~~d~--~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~ 106 (316)
T 1ijq_A 29 LRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 106 (316)
T ss_dssp CSSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCceEEEEEEe--CCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeC
Confidence 35678999998 54 4555555668999999874100001112222222345789998765244555566889999999
Q ss_pred CCCeEEEeec-CCCceeEEEecCCCCCEEEEEEC-C-CeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeC
Q 009380 313 EKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEG-Q-GGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSST 388 (536)
Q Consensus 313 ~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~-d-g~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~ 388 (536)
.......+.. .-.....+++.|.+ ..|+.... . +.|..+++. +.....+. ..-...+.|++.|++..++++-+.
T Consensus 107 ~g~~~~~~~~~~~~~P~~iavdp~~-g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~ 184 (316)
T 1ijq_A 107 KGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 184 (316)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEECCCCCcceEEeCCCC-CEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECC
Confidence 8765444433 33567899999876 45555544 3 689888875 33333332 234567899999977666666666
Q ss_pred CCcEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380 389 DGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH 453 (536)
Q Consensus 389 dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~ 453 (536)
.+.|..+|+.... ...+... ........+++. .+.++++-...+.|..+|..+++....+.
T Consensus 185 ~~~I~~~d~dg~~---~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 185 LHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CCeEEEEecCCCc---eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 7899999987421 1111111 122345677775 45555565667889999987777666553
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.48 E-value=3.6e-05 Score=77.60 Aligned_cols=244 Identities=14% Similarity=0.091 Sum_probs=144.5
Q ss_pred CEEEEEEec-CCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECC-C----eEEEEECCCC
Q 009380 284 PISGIVTQQ-YCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ-G----GLNIWDVRSR 357 (536)
Q Consensus 284 ~V~~l~~~~-~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d-g----~i~i~d~~~~ 357 (536)
....|+++| ++ ..|+.+...+.|+.+|+.++....+.........++|++++ +.|+++... + .+..++. .+
T Consensus 138 ~P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEA-DSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEE-EEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTS-SEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCC-CeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCC-CEEEEEeCCCCcccceEEEEeC-CC
Confidence 457899998 45 56777766689999999988777666666778999999998 666666542 1 3444443 33
Q ss_pred ccc--eeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEE-eC
Q 009380 358 KSA--TEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATT-SF 434 (536)
Q Consensus 358 ~~~--~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~-s~ 434 (536)
... ..+. .......++++|+++.++++-..++.|..||..... ...+...........++|+|+|++|+.+ ..
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~---~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE---TTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE---EEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc---EEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 322 2332 234467789999554677776677899999987532 0011111222457789999999955544 56
Q ss_pred CCcEEEEeCCCC--C--cceEEecc-CCCC---------ceeeee-EEEE--------cCCCCEEEEEcCCCcEEEEcCC
Q 009380 435 DDTIGIWSGVNF--E--NTSMIHHN-NQTG---------RWISSF-RAIW--------GWDDSCVFIGNMTRTVEVISPA 491 (536)
Q Consensus 435 dg~I~iwd~~~~--~--~~~~~~~~-~~~~---------~~~~~~-~~~~--------s~~g~~l~~gs~dg~I~v~d~~ 491 (536)
.+.|..++.... . ....+... ...+ ...... -+.. .++|.++++-..++.|+.++.
T Consensus 291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~- 369 (430)
T 3tc9_A 291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP- 369 (430)
T ss_dssp TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-
T ss_pred CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-
Confidence 778999876532 1 12222111 0000 000011 1222 234555666566678888884
Q ss_pred ccccceeccCC---------ce-------eeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 492 QRRSVATLQSP---------YI-------SAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 492 ~~~~~~~l~~~---------~~-------~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
.+.. .++.+. .. -..+..+++.|.++.++++-.....|+.+++|
T Consensus 370 ~G~v-~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 370 QGRV-TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TSEE-EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCcE-EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 3432 222211 00 11356788888555677777777889888764
No 275
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.46 E-value=0.00034 Score=66.88 Aligned_cols=224 Identities=11% Similarity=-0.014 Sum_probs=130.7
Q ss_pred CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECC--CeEEEEECCCCccc
Q 009380 283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ--GGLNIWDVRSRKSA 360 (536)
Q Consensus 283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d--g~i~i~d~~~~~~~ 360 (536)
.....++|++++ .++++-..++.|..||..... .........+..+++.+++ +++++.... ..|..+|..+++..
T Consensus 32 ~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~~-~~~~~~~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDG-TIFVTNHEVGEIVSITPDGNQ-QIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTS-CEEEEETTTTEEEEECTTCCE-EEEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCC-CEEEEeCCCCeEEEECCCCce-EEEEeCCCCceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCeEE
Confidence 457889999987 766666678999999987653 3344445678999999998 555544332 24777887777653
Q ss_pred eeEec-cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc---------eeecccCceeEEEEccCCCeEE
Q 009380 361 TEWLL-HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM---------KVLSHKRAVHSAYFSPSGSSLA 430 (536)
Q Consensus 361 ~~~~~-h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~---------~~~~~~~~v~~l~~sp~g~~l~ 430 (536)
..... .......++..+.+ ..+++-..++.|.++|...+.. .+. .....-...+.+ +|++.+|+
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~---~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly 182 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSG---SIWLEHPMLARSNSESVFPAANGL--KRFGNFLY 182 (306)
T ss_dssp EEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEE---EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred EEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcE---eEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence 22221 22234555555533 4555554688999999764210 000 000111234455 78887665
Q ss_pred EE-eCCCcEEEEeCCC-CCc--ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc--ceeccCCce
Q 009380 431 TT-SFDDTIGIWSGVN-FEN--TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS--VATLQSPYI 504 (536)
Q Consensus 431 t~-s~dg~I~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~--~~~l~~~~~ 504 (536)
.+ ...+.|..|++.. +.. ...+.... ..-.++++++|+++++....+.|.+|+.. ++. +..+...-
T Consensus 183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~~~------~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~- 254 (306)
T 2p4o_A 183 VSNTEKMLLLRIPVDSTDKPGEPEIFVEQT------NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV- 254 (306)
T ss_dssp EEETTTTEEEEEEBCTTSCBCCCEEEEESC------CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC-
T ss_pred EEeCCCCEEEEEEeCCCCCCCccEEEeccC------CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc-
Confidence 55 4577899999864 221 12221110 01115678899877776677899999976 444 22333221
Q ss_pred eeeeeeEeec---CCCCCEEEEEc
Q 009380 505 SAIPCRFHAH---PHQVGTLAGAT 525 (536)
Q Consensus 505 ~~~~~~~~~~---p~~~~~lasgs 525 (536)
..+..+++. | ++..|..++
T Consensus 255 -~~p~~~a~~g~~~-d~~~LyVt~ 276 (306)
T 2p4o_A 255 -IGSTAVAFGQTEG-DCTAIYVVT 276 (306)
T ss_dssp -TTEEEEEECCSTT-TTTEEEEEE
T ss_pred -CCceEEEEecccC-CCCEEEEEC
Confidence 223456776 5 445555544
No 276
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.45 E-value=0.00056 Score=68.13 Aligned_cols=232 Identities=8% Similarity=-0.027 Sum_probs=139.8
Q ss_pred eEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC
Q 009380 216 CVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL 295 (536)
Q Consensus 216 ~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 295 (536)
.|+..++..............+..|+|++. ++.++++-...+.|..+++............+.........|++.+.+.
T Consensus 93 ~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~-~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~ 171 (400)
T 3p5b_L 93 EVRKMTLDRSEYTSLIPNLRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 171 (400)
T ss_dssp EEEEECTTSCSCEEEECSCSCEEEEEEETT-TTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTT
T ss_pred eeEEEccCCcceeEeccccCcceEEeeeec-cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCC
Confidence 444445433222222223467899999983 3445555556688888888642100112233333445678999998652
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEeec-CCCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCccceeEeccCCCeEE
Q 009380 296 SKIFTSCYDGLIRLMDAEKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATEWLLHEARINT 372 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~h~~~i~~ 372 (536)
+++++-...+.|.+.+++......+.. .-.....|++.|.+ ..|+.... .+.|...++........+...-...+.
T Consensus 172 ~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~-g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~g 250 (400)
T 3p5b_L 172 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 250 (400)
T ss_dssp EEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTT-TEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEE
T ss_pred ceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEeccc-CeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEE
Confidence 555555667899999998765554443 33568899999976 45665553 368999988643332222333357789
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceE
Q 009380 373 IDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSM 451 (536)
Q Consensus 373 i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~ 451 (536)
|++.+++..++++-...+.|..+|+.... ...+... ..-.....+++. .+.++++-...+.|..+|..+++....
T Consensus 251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~ 326 (400)
T 3p5b_L 251 ITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNL 326 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCC---CEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEE
T ss_pred EEEEeCCCEEEEEECCCCEEEEEeCCCCc---cEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEE
Confidence 99998776555655567889999987532 1111111 122344566663 344555666678899999777777766
Q ss_pred Ee
Q 009380 452 IH 453 (536)
Q Consensus 452 ~~ 453 (536)
+.
T Consensus 327 i~ 328 (400)
T 3p5b_L 327 LA 328 (400)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 277
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.41 E-value=7.1e-05 Score=75.49 Aligned_cols=246 Identities=11% Similarity=0.040 Sum_probs=137.0
Q ss_pred ceEEEEEEec-CCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC-----eEEE
Q 009380 236 RITQMKFLPC-SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG-----LIRL 309 (536)
Q Consensus 236 ~I~~v~~~p~-~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg-----~I~v 309 (536)
....|+|+|. .++.++++ ...+.|+.++..+ ..+..+.........|+|++++ + |+.+...+ .+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~-----g~v~~~~~~~~~P~giavd~dG-~-lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVN-----QYVDIKTTNIGQCADVNFTLNG-D-MVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTT-----TEEEEECCCCSCEEEEEECTTC-C-EEEEECCSCTTSEEEEE
T ss_pred CCceEEEccccCCCEEEEE-eCCCCEEEEECCC-----CEEEEeecCCCCccEEEECCCC-C-EEEEcCCCCcccceEEE
Confidence 4568999982 12555444 4338899999864 2344444445668999999999 6 55444322 2333
Q ss_pred EECCCCeE-EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEE
Q 009380 310 MDAEKEVF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATS 386 (536)
Q Consensus 310 wd~~~~~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~ 386 (536)
.+...+.. ......-.....++++|.+.+++++-..++.|+.+|..++.....+. +....-..|+|+|++..++++-
T Consensus 212 ~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 212 FTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp ECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred EECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 33322211 01122234567788999443555555567899999998776533332 1122335799999884356666
Q ss_pred eCCCcEEEEeCCCCCCCCCCcceeecc---------------cCceeEEEE---------ccCCCeEEEEeCCCcEEEEe
Q 009380 387 STDGTACIWDLRSMATDKPEPMKVLSH---------------KRAVHSAYF---------SPSGSSLATTSFDDTIGIWS 442 (536)
Q Consensus 387 s~dg~i~iwdl~~~~~~~~~~~~~~~~---------------~~~v~~l~~---------sp~g~~l~t~s~dg~I~iwd 442 (536)
...+.|..+|+.........+..+.+. -.....+++ .++|.++++-...+.|+.++
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 667889998865321100011111111 123567999 77787777767778899998
Q ss_pred CCCCCcceEEeccC--C----CC------ceeeeeEEEEc-CCCCEEEEEcCCCcEEEEcC
Q 009380 443 GVNFENTSMIHHNN--Q----TG------RWISSFRAIWG-WDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 443 ~~~~~~~~~~~~~~--~----~~------~~~~~~~~~~s-~~g~~l~~gs~dg~I~v~d~ 490 (536)
. ++.......... . .+ .......++++ ++|.++++-..++.|+.+++
T Consensus 372 ~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 372 P-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp T-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred C-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 5 443222221111 0 00 11112335566 45555555555566766654
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.38 E-value=0.00033 Score=64.63 Aligned_cols=207 Identities=7% Similarity=-0.017 Sum_probs=125.4
Q ss_pred EeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee--cCCCceeEEEecCCCCCEEEEEECCCeEEEEEC
Q 009380 277 LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY--SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV 354 (536)
Q Consensus 277 ~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~--~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~ 354 (536)
.+.+-...+..++|+|++..++++...++.|...|+. +...... ......-.|++.+++ .++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEc
Confidence 4445567899999999873455557778999999998 5554443 333578888998776 45555556778999988
Q ss_pred CCCcc---ceeEe------ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--------cccCce
Q 009380 355 RSRKS---ATEWL------LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--------SHKRAV 417 (536)
Q Consensus 355 ~~~~~---~~~~~------~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--------~~~~~v 417 (536)
..... +.... ........|+|.|.+..+++ +.......||.+.... ....+... .+...+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~g~~--~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVNGLL--SSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEESTT--CSSCCEEEECHHHHHTCCSSCC
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEcccc--cCCceeeecchhhccccccCCc
Confidence 75442 22221 12344689999998744444 4444444555543210 00111111 133467
Q ss_pred eEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC----CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380 418 HSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT----GRWISSFRAIWGWDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 418 ~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~ 490 (536)
.+++++| .+++++.+.....|.++|.. ++.+..+...... ......=-++|.++|+++ +.+.-+.+++|.-
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly-IvsE~n~~y~f~~ 251 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY-IVSEPNRFYRFTP 251 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE-EEETTTEEEEEEC
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE-EEcCCceEEEEEe
Confidence 8999999 55666666777889999965 4454444322110 011112236789999744 4466666777654
No 279
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.00016 Score=73.23 Aligned_cols=257 Identities=10% Similarity=0.035 Sum_probs=144.0
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC----CCCEEEEEE-------ecCCCCEEEEEECC
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH----LGPISGIVT-------QQYCLSKIFTSCYD 304 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h----~~~V~~l~~-------~~~~~~~l~s~s~d 304 (536)
....|+|+|...+.++++-...+.|++.|+.. ..+..+..- ......|+| ++++ ..|+.+...
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~-----~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G-~~lyvad~~ 213 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN-----RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA-EYMIVAIDY 213 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTT-----TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT-CEEEEEECC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCC-----CEEEEEEccCccccCCCcEEEEeecccccCCCC-CEEEEEeCC
Confidence 46789999721355666655556788888875 333333221 234789999 9998 766666655
Q ss_pred C-------eEEEEECCC-CeEE-----EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC-------CCcc-----
Q 009380 305 G-------LIRLMDAEK-EVFD-----LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR-------SRKS----- 359 (536)
Q Consensus 305 g-------~I~vwd~~~-~~~~-----~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~-------~~~~----- 359 (536)
+ .|.+++... +.+. .....-.....++++|++..++++-..++.|..+|+. ++..
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred CCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 4 266666443 2221 1111123456788999765666666778899999997 5543
Q ss_pred ------ceeE-e-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc---c------------Cc
Q 009380 360 ------ATEW-L-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSH---K------------RA 416 (536)
Q Consensus 360 ------~~~~-~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~---~------------~~ 416 (536)
...+ . ........|+|+|++..++++-+....|+.+|..........+..+.+. . ..
T Consensus 294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~ 373 (496)
T 3kya_A 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN 373 (496)
T ss_dssp GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence 1122 2 2234568999999884345555567788886654311000000111111 0 12
Q ss_pred ee-EEEEc-------cCCCeEEEEeCCCcEEEEeCCCCCcceEE-eccC------------CCC------ceeeeeEEEE
Q 009380 417 VH-SAYFS-------PSGSSLATTSFDDTIGIWSGVNFENTSMI-HHNN------------QTG------RWISSFRAIW 469 (536)
Q Consensus 417 v~-~l~~s-------p~g~~l~t~s~dg~I~iwd~~~~~~~~~~-~~~~------------~~~------~~~~~~~~~~ 469 (536)
.. .+... ++|.++++-...+.|+.++. ++. +.++ .... ..+ ..-....+++
T Consensus 374 P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp EEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred CeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 33 45554 45676666667888999984 453 3333 2210 011 1112234667
Q ss_pred cCC-CCEEEEEcCCCcEEEEcCCccccceecc
Q 009380 470 GWD-DSCVFIGNMTRTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 470 s~~-g~~l~~gs~dg~I~v~d~~~~~~~~~l~ 500 (536)
+++ |.++++=..+..|+.+++.....++...
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~~~~~~~~ 483 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQEENVAGDE 483 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCCC------
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCCcccccCC
Confidence 776 6666666677888888887765554443
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.34 E-value=0.00039 Score=64.17 Aligned_cols=197 Identities=11% Similarity=0.082 Sum_probs=127.7
Q ss_pred cccCCceEEEEEEecCCc-cEEEEEeCCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380 231 RIMPGRITQMKFLPCSDV-RMVVAGSKLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCYDGLIR 308 (536)
Q Consensus 231 ~~~~~~I~~v~~~p~~~~-~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~ 308 (536)
.+..+.+..++|+| ++ .++++...++.|...|+. +..+..+. .-......|++.+++ .++++.-.++.+.
T Consensus 23 ~g~~~~lSGla~~~--~~~~L~aV~d~~~~I~~ld~~-----g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 23 AGITNNISSLTWSA--QSNTLFSTINKPAAIVEMTTN-----GDLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIY 94 (255)
T ss_dssp TTCCSCEEEEEEET--TTTEEEEEEETTEEEEEEETT-----CCEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEE
T ss_pred CCcccCcceeEEeC--CCCEEEEEECCCCeEEEEeCC-----CCEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEE
Confidence 34456799999999 55 455567778888888886 34444442 112457889998877 6666655678899
Q ss_pred EEECCCCeE---EEee-------cCCCceeEEEecCCCCCEEEEEECCCeEEEEECC---CCccceeEe-------ccCC
Q 009380 309 LMDAEKEVF---DLVY-------SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR---SRKSATEWL-------LHEA 368 (536)
Q Consensus 309 vwd~~~~~~---~~~~-------~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~---~~~~~~~~~-------~h~~ 368 (536)
++++..... .... ........|+|.|.+ +.|+++.......+|.+. ....+..+. .+..
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD 173 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCC-CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccC
Confidence 998764321 1111 234456899999998 566666655444555443 111122221 1334
Q ss_pred CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc----------cCceeEEEEccCCCeEEEEeCCCcE
Q 009380 369 RINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSH----------KRAVHSAYFSPSGSSLATTSFDDTI 438 (536)
Q Consensus 369 ~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~----------~~~v~~l~~sp~g~~l~t~s~dg~I 438 (536)
.+.+++++|...++++....++.|.++|... .+.....- -.....|+|.++|+ |+..+.-+.+
T Consensus 174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g------~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~ 246 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSHESRALQEVTLVG------EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRF 246 (255)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEECTTC------CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEE
T ss_pred CceeEEEcCCCCeEEEEECCCCeEEEEcCCC------CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceE
Confidence 6789999998877888888889999999764 22222211 12668999999998 4455777777
Q ss_pred EEEeC
Q 009380 439 GIWSG 443 (536)
Q Consensus 439 ~iwd~ 443 (536)
+.|.-
T Consensus 247 y~f~~ 251 (255)
T 3qqz_A 247 YRFTP 251 (255)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77753
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.33 E-value=9.7e-05 Score=80.18 Aligned_cols=199 Identities=9% Similarity=0.020 Sum_probs=116.6
Q ss_pred ceeeeecC-CCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEEeCC-----
Q 009380 185 GFKTCKDE-GLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGSKL----- 257 (536)
Q Consensus 185 ~v~~~~~s-~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d----- 257 (536)
.+....+| |||+.++...+.. +.....|.++++... .. +..........++|+| |++.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~-----G~~~~~l~v~dl~~g~~~-l~~~~~~~~~~~~Wsp--Dg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMS-----GNEVYTIEFKRISDPSQT-IADKVSGTNGEIVWGP--DHTSLFYVTKDETLRE 246 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESS-----SSSCEEEEEEETTCTTCC-CCCCEEEECSCCEECS--STTEEEEEEECTTCCE
T ss_pred EEeeeEecCCCCCEEEEEEeCC-----CCceEEEEEEECCCCCEe-CCccccCceeeEEEec--CCCEEEEEEECCCCCC
Confidence 56788999 9999999763221 112235888887654 31 1111122345789999 98877777665
Q ss_pred CcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEEC---CCeEEEEECCCC--eE--EEeec-CCCcee
Q 009380 258 GNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCY---DGLIRLMDAEKE--VF--DLVYS-SEYAVF 328 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~---dg~I~vwd~~~~--~~--~~~~~-~~~~i~ 328 (536)
..|.++++.+... .....+. .+......+.|+|++ ++|+..+. ...|.++|+.++ .. ..+.. ......
T Consensus 247 ~~v~~~~lgt~~~--~~~lv~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~ 323 (751)
T 2xe4_A 247 NKVWRHVMGKLQS--EDVCLYEEHNPLFSAFMYKAADT-NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRY 323 (751)
T ss_dssp EEEEEEETTSCGG--GCEEEEECCCTTCEEEEEECTTS-SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCE
T ss_pred CEEEEEECCCCch--hcEEEEecCCCceEEEEEECCCC-CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceE
Confidence 2578888876321 1122322 233456788999999 77665552 346888899875 33 33433 334556
Q ss_pred EEEecCCCCCEEEEEECC----CeEEEEECCCCcccee-EeccCC--CeEEEEEecCCCCEEEEEeCCCc--EEEEeC
Q 009380 329 SLSQQPNNVNTLYFGEGQ----GGLNIWDVRSRKSATE-WLLHEA--RINTIDFNPRNPNIMATSSTDGT--ACIWDL 397 (536)
Q Consensus 329 ~l~~~~~~~~~l~~g~~d----g~i~i~d~~~~~~~~~-~~~h~~--~i~~i~~~p~~~~~l~s~s~dg~--i~iwdl 397 (536)
++.|+..+ .+++....+ ..|..+|+.++..... +..+.. .+..+.+. +..++++...++. |.++|+
T Consensus 324 s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 324 DVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEETTT-EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred EEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence 66655433 344444333 3677788765322233 333444 34555554 5467777777775 455565
No 282
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.32 E-value=0.00071 Score=73.18 Aligned_cols=236 Identities=10% Similarity=0.033 Sum_probs=138.8
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC----eEEEeec-CC
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE----VFDLVYS-SE 324 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~----~~~~~~~-~~ 324 (536)
+|+... ...|+..++.. .. ...+......+..|+|.+....++++-...+.|+.+++... ....+.. .-
T Consensus 397 ~Ll~an-~~~Ir~i~l~~----~~-~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDR----SE-YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEEC-BSSEEEECTTS----CC-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred cccccc-ccceeEeeccC----Cc-ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 444433 35688878774 22 23333345668899999876244445555688999998753 2233333 34
Q ss_pred CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC-CcEEEEeCCCCCCC
Q 009380 325 YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD-GTACIWDLRSMATD 403 (536)
Q Consensus 325 ~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-g~i~iwdl~~~~~~ 403 (536)
.....|++.+.+.+++++-...+.|.+.++........+.........|++.|.++.++++-... +.|...++...
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~--- 547 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--- 547 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---
Confidence 56778899887745555556678999999875443233333445688999999765555554333 67888888652
Q ss_pred CCCcceee-cccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC
Q 009380 404 KPEPMKVL-SHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM 481 (536)
Q Consensus 404 ~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~ 481 (536)
....+. ..-...+.|++++.+..|+.+. ..+.|..+++........+.........+ .++.. .+.++++-..
T Consensus 548 --~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~---glav~-~~~lYwtD~~ 621 (791)
T 3m0c_C 548 --DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF---SLAVF-EDKVFWTDII 621 (791)
T ss_dssp --CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEE---EEEEE-TTEEEEEETT
T ss_pred --ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCC---EEEEe-CCEEEEEECC
Confidence 222222 2335788999998666565554 55679999986544333332211222222 23332 2334444455
Q ss_pred CCcEEEEcCCccccceecc
Q 009380 482 TRTVEVISPAQRRSVATLQ 500 (536)
Q Consensus 482 dg~I~v~d~~~~~~~~~l~ 500 (536)
.+.|...+..+++.+..+.
T Consensus 622 ~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 622 NEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TTEEEEEETTTCCCCEEEE
T ss_pred CCEEEEEeCCCCcceEEee
Confidence 6788888877776555543
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.31 E-value=0.001 Score=63.89 Aligned_cols=207 Identities=8% Similarity=-0.005 Sum_probs=132.4
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK 314 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~ 314 (536)
..+..++|++. ++.++++-...+.|..+++.... .....+...-.....+++.+.+..++++-...+.|.++++..
T Consensus 35 ~~~~~ld~d~~-~~~lyw~D~~~~~I~r~~~~g~~---~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 110 (318)
T 3sov_A 35 EDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTE---SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG 110 (318)
T ss_dssp EEEEEEEEEGG-GTEEEEEETTTTEEEEEETTSSS---CCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CccEEEEEEeC-CCEEEEEECCCCcEEEEEccCCC---ceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC
Confidence 35678999983 34555666667889999987531 111222222344668899876635555556678999999987
Q ss_pred CeEEEee-cCCCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380 315 EVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDG 390 (536)
Q Consensus 315 ~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg 390 (536)
.....+. ..-.....+++.|.+ ..|+.... .+.|..+++.. .....+. ..-...+.|+++|++..++++=+..+
T Consensus 111 ~~~~~l~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~ 188 (318)
T 3sov_A 111 SLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN 188 (318)
T ss_dssp CSCEEEECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CcEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEeccCCEEEEEECCCC
Confidence 5444443 334567899999876 46666553 57899988763 3333332 22345689999997766666666678
Q ss_pred cEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380 391 TACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH 453 (536)
Q Consensus 391 ~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~ 453 (536)
.|..+|+.... ...+. ........+++. .+.++++-...+.|..++..+++....+.
T Consensus 189 ~I~~~d~dG~~-----~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 189 FIHKSNLDGTN-----RQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EEEEEETTSCS-----CEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEEcCCCCc-----eEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 89999987421 11121 233455677775 34455555567889999988777766654
No 284
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.30 E-value=1.1e-05 Score=86.23 Aligned_cols=251 Identities=11% Similarity=-0.010 Sum_probs=136.6
Q ss_pred eEEecccccCcccccc----ccCCceEEEEEEecCCccEEEEEeC-CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEE
Q 009380 216 CVDIGSLTLKPENIAR----IMPGRITQMKFLPCSDVRMVVAGSK-LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVT 290 (536)
Q Consensus 216 ~v~lw~~~~~~~~~~~----~~~~~I~~v~~~p~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~ 290 (536)
.+.+||.....-.... .+.....++++.+ ++.++++|+. ++.+.+||..+.. ...+..+.. ...-.+++.
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~--~g~lyv~GG~~~~~v~~yd~~t~~--W~~~~~~~~-~R~~~s~~~ 294 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG--NGQIVVTGGNDAKKTSLYDSSSDS--WIPGPDMQV-ARGYQSSAT 294 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECT--TSCEEEECSSSTTCEEEEEGGGTE--EEECCCCSS-CCSSCEEEE
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCC--CCCEEEeCCCCCCceEEecCcCCc--eeECCCCCc-cccccceEE
Confidence 5677876443221111 1223344567777 8999999984 4589999987632 111111111 112234556
Q ss_pred ecCCCCEEEEEE-CC-----CeEEEEECCCCeEEEeecC-----CCceeEEEecCCCCCEEEEEECCC---------eEE
Q 009380 291 QQYCLSKIFTSC-YD-----GLIRLMDAEKEVFDLVYSS-----EYAVFSLSQQPNNVNTLYFGEGQG---------GLN 350 (536)
Q Consensus 291 ~~~~~~~l~s~s-~d-----g~I~vwd~~~~~~~~~~~~-----~~~i~~l~~~~~~~~~l~~g~~dg---------~i~ 350 (536)
.+++ .+++.|+ .+ ..+.+||..+.....+... ...-....+..++ .+++.|+.+| .+.
T Consensus 295 ~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~ 372 (656)
T 1k3i_A 295 MSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN-HAWLFGWKKGSVFQAGPSTAMN 372 (656)
T ss_dssp CTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTC-SCCEEECGGGCEEECCSSSEEE
T ss_pred ecCC-eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCC-ceEEEECCCCcEEEecCcccee
Confidence 6677 8888888 44 5799999998877654211 0000011222333 4555665443 567
Q ss_pred EEECCCCccceeEeccC---------CCeEEEEEecCCCCEEEEEeCCC-----------cEEEEeCCCCCCCCCCccee
Q 009380 351 IWDVRSRKSATEWLLHE---------ARINTIDFNPRNPNIMATSSTDG-----------TACIWDLRSMATDKPEPMKV 410 (536)
Q Consensus 351 i~d~~~~~~~~~~~~h~---------~~i~~i~~~p~~~~~l~s~s~dg-----------~i~iwdl~~~~~~~~~~~~~ 410 (536)
.||..+.........+. ..-.++.|...+..+++.|+.++ .|.+||..+.. ....
T Consensus 373 ~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~-----W~~~ 447 (656)
T 1k3i_A 373 WYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP-----NTVF 447 (656)
T ss_dssp EEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC-----EEEE
T ss_pred eeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC-----eeEE
Confidence 88888765433222211 12344555443447888887542 57788877642 1111
Q ss_pred ----ecccCceeEEEEccCCCeEEEEeCC-----------CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCE
Q 009380 411 ----LSHKRAVHSAYFSPSGSSLATTSFD-----------DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC 475 (536)
Q Consensus 411 ----~~~~~~v~~l~~sp~g~~l~t~s~d-----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 475 (536)
......-.++...|++++++.|+.+ ..+.+||..+.+-.. +.. ....+.... .+...++|+.
T Consensus 448 ~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~-~~~-~~~~R~~hs-~a~ll~dg~v 524 (656)
T 1k3i_A 448 ASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK-QNP-NSIVRVYHS-ISLLLPDGRV 524 (656)
T ss_dssp CTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE-CCC-CSSCCCTTE-EEEECTTSCE
T ss_pred ccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee-cCC-CCCcccccc-HhhcCCCcEE
Confidence 1122223455677899999999864 468999986543211 111 111111111 1345689999
Q ss_pred EEEEcC
Q 009380 476 VFIGNM 481 (536)
Q Consensus 476 l~~gs~ 481 (536)
+++|+.
T Consensus 525 ~v~GG~ 530 (656)
T 1k3i_A 525 FNGGGG 530 (656)
T ss_dssp EEEECC
T ss_pred EecCCC
Confidence 999885
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=0.0004 Score=70.38 Aligned_cols=248 Identities=10% Similarity=0.025 Sum_probs=145.1
Q ss_pred CEEEEEEec-CCCCEEEEE-ECCCeEEEEECCCCeEEEeecCC----CceeEEEe-------cCCCCCEEEEEECCC---
Q 009380 284 PISGIVTQQ-YCLSKIFTS-CYDGLIRLMDAEKEVFDLVYSSE----YAVFSLSQ-------QPNNVNTLYFGEGQG--- 347 (536)
Q Consensus 284 ~V~~l~~~~-~~~~~l~s~-s~dg~I~vwd~~~~~~~~~~~~~----~~i~~l~~-------~~~~~~~l~~g~~dg--- 347 (536)
....|+|.| +. ..|+.+ ...+.|++.|+.++.+..+.... .....++| ++++ +.|+++...+
T Consensus 140 ~p~~la~dp~~~-~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G-~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNK-DHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA-EYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEE-EEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT-CEEEEEECCCTTG
T ss_pred CCCEEEEccCCC-CEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCC-CEEEEEeCCCCCc
Confidence 467899998 34 445444 44578999999998877665432 25889999 9998 6666666553
Q ss_pred ----eEEEEECCC-Cccc-----eeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCC-------CCCCCCC---C-
Q 009380 348 ----GLNIWDVRS-RKSA-----TEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLR-------SMATDKP---E- 406 (536)
Q Consensus 348 ----~i~i~d~~~-~~~~-----~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~-------~~~~~~~---~- 406 (536)
.|.+++... +... ..+.. -.....++++|++..++++-..++.|..+|+. ++....+ .
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred ccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 367776443 2322 22322 23446788999776778788788899999987 4321000 0
Q ss_pred -----cceeecccCceeEEEEccCCCeEEEE-eCCCcEEEEeCCC--CCc--ceEEecc-CCCCc--------ee-eee-
Q 009380 407 -----PMKVLSHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVN--FEN--TSMIHHN-NQTGR--------WI-SSF- 465 (536)
Q Consensus 407 -----~~~~~~~~~~v~~l~~sp~g~~l~t~-s~dg~I~iwd~~~--~~~--~~~~~~~-~~~~~--------~~-~~~- 465 (536)
.+...........|+|+|+|++|+.+ +..+.|+.++... ... ...+... ...+. .+ ...
T Consensus 297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~ 376 (496)
T 3kya_A 297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ 376 (496)
T ss_dssp TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence 01111233456799999999965544 4567788866532 211 1222111 11110 00 111
Q ss_pred EEEEc-------CCCCEEEEEcCCCcEEEEcCCccccceeccCCc--------------ee--------eeeeeEeecCC
Q 009380 466 RAIWG-------WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY--------------IS--------AIPCRFHAHPH 516 (536)
Q Consensus 466 ~~~~s-------~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~--------------~~--------~~~~~~~~~p~ 516 (536)
-+... .++.++++-..++.|+.++. ++ .+.++.+.. .. ..+..+++.+.
T Consensus 377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EEEEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 12222 45666677677789999984 44 344443210 11 12456777774
Q ss_pred CCCEEEEEccCCeEEEEecC
Q 009380 517 QVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 517 ~~~~lasgs~Dg~v~iW~~d 536 (536)
++.++++=+...+|+.++++
T Consensus 455 ~g~lyVaD~~N~rIrki~~~ 474 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTISME 474 (496)
T ss_dssp TTEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEECC
Confidence 35666666777888888764
No 286
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.24 E-value=0.004 Score=65.64 Aligned_cols=204 Identities=7% Similarity=-0.007 Sum_probs=123.8
Q ss_pred CCceEEEEEEecCCccEEE-EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380 234 PGRITQMKFLPCSDVRMVV-AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA 312 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~-tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~ 312 (536)
-.....|+|++ .+..|. +-...+.|..++++.. ......+..-......|++.+.+.+++++-...+.|.+.++
T Consensus 39 ~~~~~~ld~~~--~~~~ly~sD~~~~~I~r~~~~g~---~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~ 113 (619)
T 3s94_A 39 LEDAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKT---ESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL 113 (619)
T ss_dssp CSCEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCceEEEEEEe--CCCEEEEEECCCCeEEEEEccCC---CceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEEC
Confidence 34578999998 555554 4445678888888742 11122333333568899999876345555566789999999
Q ss_pred CCCeEEEee-cCCCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeC
Q 009380 313 EKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSST 388 (536)
Q Consensus 313 ~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~ 388 (536)
.......+. ..-.....|++.|.+ ..|+.... .+.|...++.. .....+. ..-...+.|++.+++..++++-..
T Consensus 114 dG~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~ 191 (619)
T 3s94_A 114 DGSLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 191 (619)
T ss_dssp TSCSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSSEEEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEEEEECCC-CceEEEEeCCCCCCcEEEEEccCCEEEEEeCC
Confidence 876544444 344567899999976 45666553 46777777753 3333332 334567899999977666666666
Q ss_pred CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc
Q 009380 389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT 449 (536)
Q Consensus 389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~ 449 (536)
.+.|..+|+..... ..... +.......+++..+ ..+++-...+.|...|..+++..
T Consensus 192 ~~~I~~~~~dG~~~--~~~~~--~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 192 LNFIHKSNLDGTNR--QAVVK--GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp TCCEEEESSSCCEE--C-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred CCeEEEecCCCCcc--EEEEe--CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 78899999875321 11111 11222346677655 44444446678888887666543
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.23 E-value=0.0015 Score=70.60 Aligned_cols=211 Identities=9% Similarity=0.012 Sum_probs=129.4
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
...+..|+|++. ++.++++-...+.|+.+++............+.........|++.+.+.+++++-...+.|.+.++.
T Consensus 423 ~~~~~gl~~d~~-~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 423 LRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp CSSEEEEEEETT-TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEeeccc-CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 456789999983 3445556566678988888742110122333333445567899998773455555667899999998
Q ss_pred CCeEEEeec-CCCceeEEEecCCCCCEEEEEEC-C-CeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380 314 KEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEG-Q-GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG 390 (536)
Q Consensus 314 ~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~-d-g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg 390 (536)
......+.. .-.....|++.|.+ ..|+.... . +.|.+.++........+.......+.|++.+.+..++++=...+
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~ 580 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 580 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence 766554443 33568899999986 46666553 2 68999998644332233333467889999987755555555567
Q ss_pred cEEEEeCCCCCCCCCCcceee-c--ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE
Q 009380 391 TACIWDLRSMATDKPEPMKVL-S--HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI 452 (536)
Q Consensus 391 ~i~iwdl~~~~~~~~~~~~~~-~--~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~ 452 (536)
.|..+|+.... ...+. . .-.....|++. .+.++++-...+.|...|..+++.+..+
T Consensus 581 ~I~~~d~dG~~-----~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 581 SISSIDVNGGN-----RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEEETTSCS-----CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred cEEEEecCCCc-----eEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 89999986532 11222 1 12234456663 2344444446677888887777665555
No 288
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.21 E-value=0.001 Score=63.90 Aligned_cols=236 Identities=7% Similarity=-0.020 Sum_probs=138.3
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE--EEeecCCCce
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF--DLVYSSEYAV 327 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~--~~~~~~~~~i 327 (536)
+|+.+. ...|+..++..... .....+. ....+..++|.+....++++-...+.|..+++..+.. ......-...
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~--~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKE--NATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 81 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTS--CCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred EEEEEc-cCeEEEEECCCCce--EEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence 444443 35799999986320 1112222 2234678999987624445555678899999887632 1222223456
Q ss_pred eEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCCCC
Q 009380 328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS-TDGTACIWDLRSMATDKPE 406 (536)
Q Consensus 328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~~~~~~~~ 406 (536)
..+++.+.+.+++++-...+.|.++++........+.........|++.|.++.++.+-. ..+.|..+++... .
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-----~ 156 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-----S 156 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-----S
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-----C
Confidence 788888766355555556789999998654322222234456789999997655555442 3578888887642 1
Q ss_pred cceee-cccCceeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCc
Q 009380 407 PMKVL-SHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRT 484 (536)
Q Consensus 407 ~~~~~-~~~~~v~~l~~sp~g~~l~t~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~ 484 (536)
...+. ..-...+.++++|++..|+.+ +..+.|..+|+.. .....+.. ...... ..++.. .+.++++-...+.
T Consensus 157 ~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~-~~~~~P---~glav~-~~~lywtd~~~~~ 230 (318)
T 3sov_A 157 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVK-GSLPHP---FALTLF-EDILYWTDWSTHS 230 (318)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEC-SCCSCE---EEEEEE-TTEEEEEETTTTE
T ss_pred eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEec-CCCCCc---eEEEEe-CCEEEEEecCCCe
Confidence 11221 223456899999966655555 4567899999864 33333322 111222 123333 3345555556688
Q ss_pred EEEEcCCccccceecc
Q 009380 485 VEVISPAQRRSVATLQ 500 (536)
Q Consensus 485 I~v~d~~~~~~~~~l~ 500 (536)
|..++..+++.+..+.
T Consensus 231 V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 231 ILACNKYTGEGLREIH 246 (318)
T ss_dssp EEEEETTTCCSCEEEE
T ss_pred EEEEECCCCCceEEEe
Confidence 9999887776554443
No 289
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.21 E-value=0.00021 Score=77.48 Aligned_cols=192 Identities=13% Similarity=0.088 Sum_probs=112.4
Q ss_pred ceEEEEEE-ecCCccEEEEEeC-CC----cEEEEECCCC-CCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC----
Q 009380 236 RITQMKFL-PCSDVRMVVAGSK-LG----NITFWNLDSQ-QDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---- 304 (536)
Q Consensus 236 ~I~~v~~~-p~~~~~~l~tg~~-dg----~v~iwd~~~~-~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---- 304 (536)
.+...+|| | ||++||.+.. +| +|+++|+.++ ...... +.. ....+.|+|++ +.|+....|
T Consensus 175 ~~~~~~~S~P--DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~---~~~~~~WspDg-~~l~y~~~d~~~~ 245 (751)
T 2xe4_A 175 DVMEVKPAPP--EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSG---TNGEIVWGPDH-TSLFYVTKDETLR 245 (751)
T ss_dssp EEEEEEECTT--TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEE---ECSCCEECSST-TEEEEEEECTTCC
T ss_pred EEeeeEecCC--CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccC---ceeeEEEecCC-CEEEEEEECCCCC
Confidence 68889999 9 9998886543 23 4999999874 210011 111 13467899998 777666665
Q ss_pred -CeEEEEECCCCeE--EEeec--CCCceeEEEecCCCCCEEEEEE---CCCeEEEEECCCCc-cc--eeEe-ccCCCeEE
Q 009380 305 -GLIRLMDAEKEVF--DLVYS--SEYAVFSLSQQPNNVNTLYFGE---GQGGLNIWDVRSRK-SA--TEWL-LHEARINT 372 (536)
Q Consensus 305 -g~I~vwd~~~~~~--~~~~~--~~~~i~~l~~~~~~~~~l~~g~---~dg~i~i~d~~~~~-~~--~~~~-~h~~~i~~ 372 (536)
..|.++++.++.. ..++. .......+.|+|++ .+|+... ....|.++|+.++. .. ..+. .......+
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT-NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD 324 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS-SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC-CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence 3688889877532 23332 23446788999999 5665544 23468889998763 12 3332 33455566
Q ss_pred EEEecCCCCEEEEEeCC----CcEEEEeCCCCCCCCCCcce-eecccC--ceeEEEEccCCCeEEEEeCCCc--EEEEeC
Q 009380 373 IDFNPRNPNIMATSSTD----GTACIWDLRSMATDKPEPMK-VLSHKR--AVHSAYFSPSGSSLATTSFDDT--IGIWSG 443 (536)
Q Consensus 373 i~~~p~~~~~l~s~s~d----g~i~iwdl~~~~~~~~~~~~-~~~~~~--~v~~l~~sp~g~~l~t~s~dg~--I~iwd~ 443 (536)
+.|+. +..+++....+ ..|..+|+.+.. .... +..+.. .+..+.+. .+.++++...++. |.++|+
T Consensus 325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~----~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPS----DWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEET-TTEEEEEECTTTCTTCEEEEEETTSTT----CCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcc----cceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 66654 54555555544 356677765421 1122 333433 34455554 2344555566775 556665
No 290
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.19 E-value=0.0055 Score=59.05 Aligned_cols=274 Identities=11% Similarity=0.024 Sum_probs=140.0
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEE-eccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYL-FRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA 312 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~ 312 (536)
...+.+|.|.+ ++..+++| ..|.| +...+.+. ....+.. .......+.+|.|.+ + . ++.++.++.|.. ..
T Consensus 35 ~~~~~~v~~~~--~~~~~~~G-~~g~i-~~s~DgG~-tW~~~~~~~~~~~~~~~~i~~~~-~-~-~~~~g~~g~i~~-S~ 105 (327)
T 2xbg_A 35 TATILDMSFID--RHHGWLVG-VNATL-METRDGGQ-TWEPRTLVLDHSDYRFNSVSFQG-N-E-GWIVGEPPIMLH-TT 105 (327)
T ss_dssp SSCEEEEEESS--SSCEEEEE-TTTEE-EEESSTTS-SCEECCCCCSCCCCEEEEEEEET-T-E-EEEEEETTEEEE-ES
T ss_pred CCcEEEEEECC--CCcEEEEc-CCCeE-EEeCCCCC-CCeECCCCCCCCCccEEEEEecC-C-e-EEEEECCCeEEE-EC
Confidence 34689999976 66677755 46654 33333211 1111111 112344688999976 3 3 444566775544 33
Q ss_pred CCCe-EEEee---cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE-eccCCCeEEEEEecCCCCEEEEEe
Q 009380 313 EKEV-FDLVY---SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW-LLHEARINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 313 ~~~~-~~~~~---~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~h~~~i~~i~~~p~~~~~l~s~s 387 (536)
+.++ ..... .....+..+.+.+++ .+++++.+|.|..- ...++.-... ..+...+..+.+.|++ .+++.+.
T Consensus 106 DgG~tW~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g~ 181 (327)
T 2xbg_A 106 DGGQSWSQIPLDPKLPGSPRLIKALGNG--SAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSG-EYVAVSS 181 (327)
T ss_dssp STTSSCEECCCCTTCSSCEEEEEEEETT--EEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTS-CEEEEET
T ss_pred CCCCCceECccccCCCCCeEEEEEECCC--CEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCC-cEEEEEC
Confidence 3332 22222 123457778776654 44455556655332 1223332222 2445678999999966 5666554
Q ss_pred CCCcEEE-EeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc-CCCCceeeee
Q 009380 388 TDGTACI-WDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN-NQTGRWISSF 465 (536)
Q Consensus 388 ~dg~i~i-wdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~ 465 (536)
+|.+.. +|-. +. ............+..+.+.+++..+ .++.+|.+++.+...++.-..+... ..... ..+
T Consensus 182 -~G~~~~S~d~g-G~---tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~--~~~ 253 (327)
T 2xbg_A 182 -RGSFYSTWEPG-QT---AWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSV--GFL 253 (327)
T ss_dssp -TSSEEEEECTT-CS---SCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCS--CEE
T ss_pred -CCcEEEEeCCC-CC---ceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCc--ceE
Confidence 555544 3321 11 0111112345678899999988755 5566788877642212211111111 01111 123
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC---ceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380 466 RAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP---YISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534 (536)
Q Consensus 466 ~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~---~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~ 534 (536)
.+.+.+++..++++. ++.| ++....++.-..+... .... ..+.+.+ ...++.++.+|.|.-++
T Consensus 254 ~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~--~~v~~~~--~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 254 DLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNF--YKILFFS--PDQGFILGQKGILLRYV 319 (327)
T ss_dssp EEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCC--CEEEEEE--TTEEEEECSTTEEEEEC
T ss_pred EEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCe--EEEEEEC--CCceEEEcCCceEEEEc
Confidence 356777777766665 6666 4455555433333311 1112 2344443 25677778889887665
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.15 E-value=0.00087 Score=64.26 Aligned_cols=198 Identities=9% Similarity=0.135 Sum_probs=126.1
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC---CC---EEEEEE-C--CCeEEEEEC--CCC
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC---LS---KIFTSC-Y--DGLIRLMDA--EKE 315 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~---~~---~l~s~s-~--dg~I~vwd~--~~~ 315 (536)
...++++..+.+-+.+||+. ++.+..+.. +.++.+..-|.- .. ++++.. . +++|++|++ .++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~-----G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~ 111 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLD-----GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG 111 (355)
T ss_dssp GGCEEEEEETTTEEEEEETT-----SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC
T ss_pred CccEEEEEcCCCCEEEEcCC-----CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC
Confidence 44567777788899999995 677777654 567888777631 01 233333 3 589999977 444
Q ss_pred eEEEeec------CC-CceeEEEe--cCCCCC-EEEEEECCCeEEEEECC-------CCccceeEeccCCCeEEEEEecC
Q 009380 316 VFDLVYS------SE-YAVFSLSQ--QPNNVN-TLYFGEGQGGLNIWDVR-------SRKSATEWLLHEARINTIDFNPR 378 (536)
Q Consensus 316 ~~~~~~~------~~-~~i~~l~~--~~~~~~-~l~~g~~dg~i~i~d~~-------~~~~~~~~~~h~~~i~~i~~~p~ 378 (536)
.+..+-. .. ..+..+|+ ++.... ++++...+|.+..|++. +.+.++++.. ...+..+...+.
T Consensus 112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~ 190 (355)
T 3amr_A 112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE 190 (355)
T ss_dssp CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence 4443311 22 56777888 665433 68888899999999983 2345667663 457888888886
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec---ccCceeEEEEc--cCCC-eEEEEe-CCCcEEEEeCC-CCCcce
Q 009380 379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS---HKRAVHSAYFS--PSGS-SLATTS-FDDTIGIWSGV-NFENTS 450 (536)
Q Consensus 379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~---~~~~v~~l~~s--p~g~-~l~t~s-~dg~I~iwd~~-~~~~~~ 450 (536)
. ..|+.+-++.-|..+|.+-........+...+ ....+..|++- ++++ +|++++ .+++..+||.. +.+.+.
T Consensus 191 ~-g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 191 Y-GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp T-TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred C-CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 6 57888888866666664422111112333322 22467888874 5555 666666 67799999986 555555
Q ss_pred EEe
Q 009380 451 MIH 453 (536)
Q Consensus 451 ~~~ 453 (536)
.+.
T Consensus 270 ~f~ 272 (355)
T 3amr_A 270 DFR 272 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 292
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.00 E-value=3.9e-05 Score=82.33 Aligned_cols=228 Identities=13% Similarity=0.051 Sum_probs=128.2
Q ss_pred CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEE-ECCCeEEEEECCC----CeEEEeec-CCCceeEE
Q 009380 257 LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTS-CYDGLIRLMDAEK----EVFDLVYS-SEYAVFSL 330 (536)
Q Consensus 257 dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~-s~dg~I~vwd~~~----~~~~~~~~-~~~~i~~l 330 (536)
.+.|++.++.. .. ...+......+..|+|.+.+ ..|+.+ ...+.|+.+++.+ .....+.. .-.....|
T Consensus 385 ~~~I~~id~~~----~~-~~~~~~~~~~p~gla~d~~~-~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl 458 (699)
T 1n7d_A 385 RHEVRKMTLDR----SE-YTSLIPNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 458 (699)
T ss_dssp TTC-CEECTTS----CC-EECCSCCCTTCCCCEEETTT-TEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE
T ss_pred ccceEEEeCCC----Cc-ceeeeccCcceEEEcccccc-CeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE
Confidence 35677777764 22 22222223456789999876 555555 4568899999875 22222221 12345678
Q ss_pred EecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC-CcEEEEeCCCCCCCCCCcce
Q 009380 331 SQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD-GTACIWDLRSMATDKPEPMK 409 (536)
Q Consensus 331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-g~i~iwdl~~~~~~~~~~~~ 409 (536)
++.+.+.+++++-...+.|.++++........+.........|++.|.++.++++-... +.|.++++.... ...
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-----~~~ 533 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-----IYS 533 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-----CCE
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-----eeE
Confidence 88765535555545678899999875433222222234567889998765555554333 678887775421 111
Q ss_pred ee-cccCceeEEEEccCCCeEE-EEeCCCcEEEEeCCCCCcceEEecc-CCCCceeeeeEEEEcCCCCEEEEEcCCCcEE
Q 009380 410 VL-SHKRAVHSAYFSPSGSSLA-TTSFDDTIGIWSGVNFENTSMIHHN-NQTGRWISSFRAIWGWDDSCVFIGNMTRTVE 486 (536)
Q Consensus 410 ~~-~~~~~v~~l~~sp~g~~l~-t~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~ 486 (536)
+. ..-...+.|+|+|++..|+ +-...+.|.++++... ....+... ...... +.+++..+ .++++....+.|.
T Consensus 534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P---~glavd~~-~lywtd~~~~~V~ 608 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHP---FSLAVFED-KVFWTDIINEAIF 608 (699)
T ss_dssp ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSC---CCCEEETT-EEEEECSTTTCEE
T ss_pred EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCc---eEeEEECC-EEEEEeCCCCeEE
Confidence 11 2234567899999755454 4456678999998643 33333211 111111 11223333 3444555568899
Q ss_pred EEcCCccccceecc
Q 009380 487 VISPAQRRSVATLQ 500 (536)
Q Consensus 487 v~d~~~~~~~~~l~ 500 (536)
.++..+++.+..+.
T Consensus 609 ~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 609 SANRLTGSDVNLLA 622 (699)
T ss_dssp EEETTTEEEEECCC
T ss_pred EEEccCCCceEEee
Confidence 99988777666554
No 293
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.97 E-value=5.1e-05 Score=81.43 Aligned_cols=212 Identities=8% Similarity=-0.017 Sum_probs=123.2
Q ss_pred CceEEEEEEecCCccEEEEE-eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 235 GRITQMKFLPCSDVRMVVAG-SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg-~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
..+..|+|++ .+..|+.. ...+.|..+++............+.........|++.+.+..++++-...+.|.++++.
T Consensus 406 ~~p~gla~d~--~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 406 RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp TTCCCCEEET--TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred cceEEEcccc--ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC
Confidence 4577899998 55555544 45678999998741100011111111112345678876553555555567889999998
Q ss_pred CCeEEEeecC-CCceeEEEecCCCCCEEEEEECC-CeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380 314 KEVFDLVYSS-EYAVFSLSQQPNNVNTLYFGEGQ-GGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDG 390 (536)
Q Consensus 314 ~~~~~~~~~~-~~~i~~l~~~~~~~~~l~~g~~d-g~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg 390 (536)
......+... ......|++.|.+..++++-... +.|.++++.... ...+. ......+.|+|.|++..++++-+..+
T Consensus 484 g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~ 562 (699)
T 1n7d_A 484 GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 562 (699)
T ss_dssp SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTCCEEEEETTTT
T ss_pred CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCCEEEEEecCCC
Confidence 7655544432 34567889998764444433222 678888775332 22222 22345678999998767777777778
Q ss_pred cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE
Q 009380 391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI 452 (536)
Q Consensus 391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~ 452 (536)
.|..+|+.... ...+............|++..+ .++++....+.|..+|..+++.+..+
T Consensus 563 ~I~~~d~dG~~--~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 563 SISSIDVNGGN--RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp EEEEECSSSSC--CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred eEEEEccCCCc--eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 99999986521 0011111111223345566543 44555556678999998777655554
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.96 E-value=0.019 Score=60.46 Aligned_cols=232 Identities=9% Similarity=-0.007 Sum_probs=140.3
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC-Cce
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE-YAV 327 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~-~~i 327 (536)
+|+.+ ..+.|+..++... .....+. ..-..+..|+|++.....+++-..++.|..+++.......+.... ...
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~----~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P 82 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETN----NNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYP 82 (628)
T ss_dssp EEEEE-ETTEEEEEESSCT----TCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCC
T ss_pred EEEEE-eCCcEEEEECCCC----CcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCc
Confidence 45544 4568999999852 2222221 223467899999987344445556789999999876544444332 457
Q ss_pred eEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEE-eCCCcEEEEeCCCCCCCCC
Q 009380 328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATS-STDGTACIWDLRSMATDKP 405 (536)
Q Consensus 328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~-s~dg~i~iwdl~~~~~~~~ 405 (536)
..+++.+.+.+++++-...+.|.+.++.... ...+. ........|++.|.++.++.+- +..+.|...++...
T Consensus 83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~----- 156 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS----- 156 (628)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-----
T ss_pred ceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC-----
Confidence 7888887764555555567899999986543 33332 3445678999999665555543 22567888887653
Q ss_pred CcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCc
Q 009380 406 EPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRT 484 (536)
Q Consensus 406 ~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~ 484 (536)
....+...-...+.|++++++..|+.+. ..+.|..+|+..... ..+... ..... .++... +..+++-...+.
T Consensus 157 ~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~---glav~~-~~ly~tD~~~~~ 229 (628)
T 4a0p_A 157 ERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPF---GLTQYQ-DYIYWTDWSRRS 229 (628)
T ss_dssp SCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEE---EEEEET-TEEEEEETTTTE
T ss_pred ceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCce---EEEEEC-CEEEEecCCCCE
Confidence 2222233455778999999766565554 567899999865443 333221 11222 233332 334444445678
Q ss_pred EEEEcCCccccceec
Q 009380 485 VEVISPAQRRSVATL 499 (536)
Q Consensus 485 I~v~d~~~~~~~~~l 499 (536)
|...|..+++....+
T Consensus 230 I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 230 IERANKTSGQNRTII 244 (628)
T ss_dssp EEEEETTTCCSCEEE
T ss_pred EEEEECCCCCceEEE
Confidence 888887666544333
No 295
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.95 E-value=0.0033 Score=59.72 Aligned_cols=205 Identities=8% Similarity=-0.004 Sum_probs=126.3
Q ss_pred eccCCCCEEEEEEecCCCCEEEEEE-CCCeEEEEECCCCeEEEe-ecC-------CCceeEEEe---cCCCCCEEEEEE-
Q 009380 278 FRTHLGPISGIVTQQYCLSKIFTSC-YDGLIRLMDAEKEVFDLV-YSS-------EYAVFSLSQ---QPNNVNTLYFGE- 344 (536)
Q Consensus 278 ~~~h~~~V~~l~~~~~~~~~l~s~s-~dg~I~vwd~~~~~~~~~-~~~-------~~~i~~l~~---~~~~~~~l~~g~- 344 (536)
+......-.++.|++.. ..|+.++ +.++|..||...+....+ +.. ...+..|.| .|++ .++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~-g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~ 85 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTR-QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKN 85 (334)
T ss_dssp ECCTTCCCSCEEEETTT-TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEE
T ss_pred ecCcccCCcCccCcCCC-CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcc
Confidence 33344445678999876 5666665 799999999986644333 221 114689999 5775 5666543
Q ss_pred ------------CCCeEEEEECC---CCccceeEecc-------------CCCeEEEEEecCCCCEEEEEeCC-CcEEEE
Q 009380 345 ------------GQGGLNIWDVR---SRKSATEWLLH-------------EARINTIDFNPRNPNIMATSSTD-GTACIW 395 (536)
Q Consensus 345 ------------~dg~i~i~d~~---~~~~~~~~~~h-------------~~~i~~i~~~p~~~~~l~s~s~d-g~i~iw 395 (536)
.+..|..||+. +++.+...... ....+.|+..++| +..++++.- +.|..+
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV 164 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARV 164 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEE
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEE
Confidence 15789999999 88876655421 1247899999988 677777777 777666
Q ss_pred eCCCCCCCCCCcceee------cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc--C--CCCceeeee
Q 009380 396 DLRSMATDKPEPMKVL------SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN--N--QTGRWISSF 465 (536)
Q Consensus 396 dl~~~~~~~~~~~~~~------~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~--~--~~~~~~~~~ 465 (536)
+.... ....+. ......+.|+++|+|..|++....+.|..+|+...... .+... . ........+
T Consensus 165 ~pdG~-----~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgi 238 (334)
T 2p9w_A 165 SADGK-----TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKI 238 (334)
T ss_dssp CTTSC-----CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEE
T ss_pred eCCCC-----EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccc
Confidence 65531 111111 12234679999999998888877999999999843220 12211 1 011111111
Q ss_pred EEEEcCCCCE-EEEEcCCCcEEEEcCCc
Q 009380 466 RAIWGWDDSC-VFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 466 ~~~~s~~g~~-l~~gs~dg~I~v~d~~~ 492 (536)
+.-..+|+. |++.+..+.+.+.+...
T Consensus 239 -lp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 239 -VTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp -EEEEETTEEEEEEEETTEEEEEECSST
T ss_pred -cccccCCEEEEEEcCCCCEEEEECCCC
Confidence 112236666 55555666666666554
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.94 E-value=0.0086 Score=56.88 Aligned_cols=202 Identities=10% Similarity=0.062 Sum_probs=122.2
Q ss_pred EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceE-Eecc----CC--CCEEEEEE---ecCCCCEEEEEE-----
Q 009380 238 TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIY-LFRT----HL--GPISGIVT---QQYCLSKIFTSC----- 302 (536)
Q Consensus 238 ~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~-~~~~----h~--~~V~~l~~---~~~~~~~l~s~s----- 302 (536)
-+++|++. ++.++++.-..|+|..|+...+ .... .+.. .. ..+..|.| .|++ .++++..
T Consensus 16 E~~~wd~~-~g~~~vs~l~~g~V~~~~~~~~----~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af 89 (334)
T 2p9w_A 16 EDTIYDRT-RQVFYQSNLYKGRIEVYNPKTQ----SHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSF 89 (334)
T ss_dssp SCEEEETT-TTEEEEEETTTTEEEEECTTTC----CEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTT
T ss_pred cCccCcCC-CCEEEEEeccCCEEEEEcCCCC----eEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcccccc
Confidence 46789873 3444444447899999998742 2111 2222 11 13678999 5775 6666543
Q ss_pred --------CCCeEEEEECC---CCeEEEeec--------------CCCceeEEEecCCCCCEEEEEECC-CeEEEEECCC
Q 009380 303 --------YDGLIRLMDAE---KEVFDLVYS--------------SEYAVFSLSQQPNNVNTLYFGEGQ-GGLNIWDVRS 356 (536)
Q Consensus 303 --------~dg~I~vwd~~---~~~~~~~~~--------------~~~~i~~l~~~~~~~~~l~~g~~d-g~i~i~d~~~ 356 (536)
.+..|..+|+. +++...... ....+..++..++| +..++++.. +.|..++...
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTS
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCC
Confidence 26789999998 665443332 11258899999998 788888888 8888887653
Q ss_pred CccceeEec------cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--cc---cCceeEE-EEcc
Q 009380 357 RKSATEWLL------HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SH---KRAVHSA-YFSP 424 (536)
Q Consensus 357 ~~~~~~~~~------h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~---~~~v~~l-~~sp 424 (536)
. .+..+.. .....+.|+++|++ ++|++....|.|..+|+.... ...+... +. -.....+ ..-.
T Consensus 169 ~-~~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv---~~~v~~~~~G~~~~~~~~dgilp~~~ 243 (334)
T 2p9w_A 169 K-TVSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPY---AWPEPVKINGDFGTLSGTEKIVTVPV 243 (334)
T ss_dssp C-CEEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSS---CCCEECEESSCCCCCTTEEEEEEEEE
T ss_pred C-EEeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCc---ceeecccccCCcccccCccccccccc
Confidence 3 3333321 12236799999988 566666559999999998421 1012221 21 1223333 2233
Q ss_pred CCCe-EEEEeCCCcEEEEeCCCCCcceE
Q 009380 425 SGSS-LATTSFDDTIGIWSGVNFENTSM 451 (536)
Q Consensus 425 ~g~~-l~t~s~dg~I~iwd~~~~~~~~~ 451 (536)
+|+. +++....+.+.+.+...++....
T Consensus 244 ~G~vllV~~~~~~~~~l~S~DgW~sa~~ 271 (334)
T 2p9w_A 244 GNESVLVGARAPYAISFRSWDNWKSANI 271 (334)
T ss_dssp TTEEEEEEEETTEEEEEECSSTTSEEEE
T ss_pred CCEEEEEEcCCCCEEEEECCCCcceeEE
Confidence 7777 55555677777777665544433
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.88 E-value=0.04 Score=58.07 Aligned_cols=205 Identities=10% Similarity=0.020 Sum_probs=132.0
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK 314 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~ 314 (536)
..+..|+|++. ++.++++-..++.|..++++. ......+.........|++.+.+.+++++-...+.|.+.++..
T Consensus 37 ~~~~~l~~d~~-~~~lywtD~~~~~I~r~~~~g----~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG 111 (628)
T 4a0p_A 37 KEASALDFDVT-DNRIYWTDISLKTISRAFMNG----SALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDG 111 (628)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEEETTS----CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEEECC-CCEEEEEECCCCeEEEEECCC----CCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCC
Confidence 46889999983 345555666678899998874 2222223322345678999877634555555678999999987
Q ss_pred CeEEEee-cCCCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380 315 EVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGT 391 (536)
Q Consensus 315 ~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~ 391 (536)
.....+. ..-.....|++.|.. ..|+.... .+.|...++.... ...+.......+.|++.+++..+.++-...+.
T Consensus 112 ~~~~~l~~~~l~~P~~iavdp~~-G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~ 189 (628)
T 4a0p_A 112 QHRQVLVWKDLDSPRALALDPAE-GFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNL 189 (628)
T ss_dssp TTCEEEECSSCCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEETTTTE
T ss_pred CcEEEEEeCCCCCcccEEEccCC-CeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEECCCCE
Confidence 6543333 334567899999876 46666653 5688888876443 33333345678899999977566666666788
Q ss_pred EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE
Q 009380 392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI 452 (536)
Q Consensus 392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~ 452 (536)
|..+|+.... . ..+.........+++.. +.++++-...+.|...|..+++....+
T Consensus 190 I~~~d~dG~~----~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 190 IESSNMLGLN----R-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEEEETTSCS----C-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEEcCCCCc----e-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 9999997632 1 12223333456777764 444455445788999987666544433
No 298
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.86 E-value=0.0099 Score=57.23 Aligned_cols=239 Identities=9% Similarity=-0.013 Sum_probs=119.4
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
...+.+|.|.| + ..+++ +..|.| |...+.......+.....+.+.+..|.+.+++ ..+ .++.+|.|.. ..+
T Consensus 79 ~~~~~~i~~~~--~-~~~~~-g~~g~i--~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~-~~~-~~~~~g~v~~-S~D 149 (327)
T 2xbg_A 79 DYRFNSVSFQG--N-EGWIV-GEPPIM--LHTTDGGQSWSQIPLDPKLPGSPRLIKALGNG-SAE-MITNVGAIYR-TKD 149 (327)
T ss_dssp CCEEEEEEEET--T-EEEEE-EETTEE--EEESSTTSSCEECCCCTTCSSCEEEEEEEETT-EEE-EEETTCCEEE-ESS
T ss_pred CccEEEEEecC--C-eEEEE-ECCCeE--EEECCCCCCceECccccCCCCCeEEEEEECCC-CEE-EEeCCccEEE-EcC
Confidence 34688999975 3 34444 445644 33332211112211111233457788887765 444 4455665432 222
Q ss_pred CC-eEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE-eccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380 314 KE-VFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW-LLHEARINTIDFNPRNPNIMATSSTDG 390 (536)
Q Consensus 314 ~~-~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~h~~~i~~i~~~p~~~~~l~s~s~dg 390 (536)
.+ ..... ......+..+.+.+++ .+++++ .+|.+..-+-..+..-..+ ......+..+.+.+++ .++ .++.+|
T Consensus 150 gG~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g-~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g-~~~-~~~~~G 225 (327)
T 2xbg_A 150 SGKNWQALVQEAIGVMRNLNRSPSG-EYVAVS-SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDG-RLW-MIVNGG 225 (327)
T ss_dssp TTSSEEEEECSCCCCEEEEEECTTS-CEEEEE-TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTS-CEE-EEETTT
T ss_pred CCCCCEEeecCCCcceEEEEEcCCC-cEEEEE-CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCC-CEE-EEeCCc
Confidence 23 23222 2344578899999876 555544 5555554432112222222 2345678899998876 444 445578
Q ss_pred cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEc
Q 009380 391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG 470 (536)
Q Consensus 391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s 470 (536)
.+++.+...+..-.........+...+.++.+.+++..++++ .++.| ++....++.-..+.........+ ..+.|.
T Consensus 226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~--~~v~~~ 301 (327)
T 2xbg_A 226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNF--YKILFF 301 (327)
T ss_dssp EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCC--CEEEEE
T ss_pred eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCe--EEEEEE
Confidence 887774221210000000001123458889999887765554 46766 44444444333332111111112 225565
Q ss_pred CCCCEEEEEcCCCcEEEEcC
Q 009380 471 WDDSCVFIGNMTRTVEVISP 490 (536)
Q Consensus 471 ~~g~~l~~gs~dg~I~v~d~ 490 (536)
+++ .+++++.+|.|.-++-
T Consensus 302 ~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 302 SPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp ETT-EEEEECSTTEEEEECC
T ss_pred CCC-ceEEEcCCceEEEEcC
Confidence 444 4556667887766653
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.86 E-value=0.042 Score=57.80 Aligned_cols=158 Identities=10% Similarity=-0.017 Sum_probs=97.2
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC--CCeEEEEEC
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY--DGLIRLMDA 312 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~--dg~I~vwd~ 312 (536)
.....+++.+. .++++++-...+.|.+.+++. ......+...-.....|++.|.+ ..|+.+.. .+.|...++
T Consensus 84 ~~P~GlAvD~~-~~~ly~~d~~~~~I~v~~~dG----~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~~~ 157 (619)
T 3s94_A 84 LSPDGLACDWL-GEKLYWTDSETNRIEVSNLDG----SLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGM 157 (619)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEEETTS----CSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEEET
T ss_pred CCcCeEEEEec-CCEEEEEeCCCCEEEEEECCC----CCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEEEEEC
Confidence 46889999983 344556666678999999885 22222232344556789999986 56665553 467777787
Q ss_pred CCCeEEEee-cCCCceeEEEecCCCCCEEEEE-ECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380 313 EKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFG-EGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG 390 (536)
Q Consensus 313 ~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g-~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg 390 (536)
.......+. ..-.....|++.+++ ..|+.+ ...+.|..+|+..........+......+|++..+ +++++-...+
T Consensus 158 dG~~~~~l~~~~~~~P~Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~ 234 (619)
T 3s94_A 158 DGSSRFIIINSEIYWPNGLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTH 234 (619)
T ss_dssp TSCSCEEEECSSCSSEEEEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTC
T ss_pred CCCceEEEEeCCCCCCcEEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCC
Confidence 765443333 234567899999877 455554 45678999998654322222212223346677653 4566655678
Q ss_pred cEEEEeCCCCC
Q 009380 391 TACIWDLRSMA 401 (536)
Q Consensus 391 ~i~iwdl~~~~ 401 (536)
.|...|..+++
T Consensus 235 ~V~~~d~~tg~ 245 (619)
T 3s94_A 235 SILACNKYTGE 245 (619)
T ss_dssp SEEEEESSSCC
T ss_pred EEEEEECCCCc
Confidence 89888887654
No 300
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.81 E-value=0.029 Score=63.33 Aligned_cols=285 Identities=12% Similarity=0.086 Sum_probs=150.4
Q ss_pred cCCceEEEEEEecCC----ccEEEEEeC-CCcEEEEECCCCCCCCCceEEecc-CCCCEEEEEEecC-CCCEEEEEECCC
Q 009380 233 MPGRITQMKFLPCSD----VRMVVAGSK-LGNITFWNLDSQQDEDNGIYLFRT-HLGPISGIVTQQY-CLSKIFTSCYDG 305 (536)
Q Consensus 233 ~~~~I~~v~~~p~~~----~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~-~~~~l~s~s~dg 305 (536)
..+.|.|+++.|..+ ..+++.|.. |++|+|+++.+ ...+....- -.....++.+..- +..+|..|-.||
T Consensus 552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~----l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG 627 (1158)
T 3ei3_A 552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS----FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDG 627 (1158)
T ss_dssp CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT----CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTS
T ss_pred CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC----CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCC
Confidence 467899999987432 379999997 99999999985 333332221 1224445544322 226788999999
Q ss_pred eEEEEECC--CCeEEE---eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEE-EEEecCC
Q 009380 306 LIRLMDAE--KEVFDL---VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINT-IDFNPRN 379 (536)
Q Consensus 306 ~I~vwd~~--~~~~~~---~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~-i~~~p~~ 379 (536)
.+..+.+. ++.+.. .+-...++.=..+...+ ..-+.+..+....+|--+ ++.... ......+.+ ..|+...
T Consensus 628 ~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~-~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~ 704 (1158)
T 3ei3_A 628 ALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLS-TTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDG 704 (1158)
T ss_dssp EEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSS-CEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSS
T ss_pred eEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCC-ceeEEEECCCCEEEEEcC-CceEEe-ccChHHhceEeccCccc
Confidence 98766554 443321 12223444444444444 233333444444445432 222111 112223332 3343211
Q ss_pred -CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-----------------------
Q 009380 380 -PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD----------------------- 435 (536)
Q Consensus 380 -~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d----------------------- 435 (536)
+.-++..+ ++.++|.-+.... ........-...+..++++|..+.++.+..+
T Consensus 705 ~~~g~v~~~-~~~LrI~~i~~~~---~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1158)
T 3ei3_A 705 YPDSLALAN-NSTLTIGTIDEIQ---KLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALS 780 (1158)
T ss_dssp STTEEEEEC-SSCEEEEEECCSS---SEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSE
T ss_pred CCCcEEEEc-CCceEEEEecccC---CeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhh
Confidence 23355444 4569999886542 2333344566788889999977655544311
Q ss_pred --------------------------CcEEEEeCCCCCcceEEeccCCCCceeeee-EEEEcCC-CCEEEEEc-------
Q 009380 436 --------------------------DTIGIWSGVNFENTSMIHHNNQTGRWISSF-RAIWGWD-DSCVFIGN------- 480 (536)
Q Consensus 436 --------------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~-g~~l~~gs------- 480 (536)
+.|+++|..+++.+..+... ....+.++ .+.|..+ ..+|++|+
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~--~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e 858 (1158)
T 3ei3_A 781 SSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFL--QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE 858 (1158)
T ss_dssp EEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECC--TTEEEEEEEEECCTTCCCCEEEEEEEECCTTC
T ss_pred hcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCC--CCcceEEEEEEEEccCCCEEEEEEeeecCCCC
Confidence 23667776666655444322 12222222 2334433 46888886
Q ss_pred ---CCCcEEEEcCCccccceeccC-CceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380 481 ---MTRTVEVISPAQRRSVATLQS-PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536 (536)
Q Consensus 481 ---~dg~I~v~d~~~~~~~~~l~~-~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d 536 (536)
..|.|.+|++..+ .+..+.. ...+.+.+...+ +|.+|++.+ .+|++|++.
T Consensus 859 ~~~~~Gri~vf~v~~~-kL~lv~~~~v~g~v~al~~~---~g~Lla~ig--~~l~vy~l~ 912 (1158)
T 3ei3_A 859 AEPKQGRIVVFQYSDG-KLQTVAEKEVKGAVYSMVEF---NGKLLASIN--STVRLYEWT 912 (1158)
T ss_dssp SSCCCEEEEEEEEETT-EEEEEEEEEESSCEEEEEEE---TTEEEEEET--TEEEEEEEC
T ss_pred CCCCceEEEEEEEECC-EEEEEEEEEcCCcCEEEeee---CCEEEEEcC--CEEEEEECC
Confidence 3488999998744 2322221 112223222233 444444433 689999863
No 301
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.65 E-value=0.0054 Score=58.80 Aligned_cols=185 Identities=12% Similarity=0.137 Sum_probs=111.0
Q ss_pred CEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecC----CCC--EEEEEeC---CCcEEEEeCCCCCCCCCCcc
Q 009380 338 NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPR----NPN--IMATSST---DGTACIWDLRSMATDKPEPM 408 (536)
Q Consensus 338 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~----~~~--~l~s~s~---dg~i~iwdl~~~~~~~~~~~ 408 (536)
.+++.....+.|.+||+ +++.++.+.. +.++.|..-|. +.. ++++... +++|.+|++.... ..+
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~----~~l 113 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN----GTL 113 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT----CCE
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC----Cce
Confidence 45666677889999999 8888888753 67888888772 100 2333333 5789999774211 112
Q ss_pred eeec-------cc-CceeEEEE--ccC-CC-eEEEEeCCCcEEEEeCC---CC----CcceEEeccCCCCceeeeeEEEE
Q 009380 409 KVLS-------HK-RAVHSAYF--SPS-GS-SLATTSFDDTIGIWSGV---NF----ENTSMIHHNNQTGRWISSFRAIW 469 (536)
Q Consensus 409 ~~~~-------~~-~~v~~l~~--sp~-g~-~l~t~s~dg~I~iwd~~---~~----~~~~~~~~~~~~~~~~~~~~~~~ 469 (536)
...+ .. ..+..+++ +|. +. ++++...+|.+..|++. .+ +.+..+....+ .- .|+.
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq----~E--gcvv 187 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ----TE--GMAA 187 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC----EE--EEEE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC----cc--eEEE
Confidence 1111 11 56677777 774 43 68888889999999883 22 23333433221 22 2556
Q ss_pred cCCCCEEEEEcCCCcEEEEcCC-----ccccceeccCCce--eeeeeeEeecCCCCC--EEEEEccCCeEEEEecC
Q 009380 470 GWDDSCVFIGNMTRTVEVISPA-----QRRSVATLQSPYI--SAIPCRFHAHPHQVG--TLAGATGGGQVYVWTSD 536 (536)
Q Consensus 470 s~~g~~l~~gs~dg~I~v~d~~-----~~~~~~~l~~~~~--~~~~~~~~~~p~~~~--~lasgs~Dg~v~iW~~d 536 (536)
.+....|+++-.+..|..|+.. +++.+..+...+. ..--+.+...+ ++. +|+++-.+..+.|||.+
T Consensus 188 Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 188 DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEEESS
T ss_pred cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecC-CCCEEEEEEcCCCCEEEEEECC
Confidence 7888899999998777777754 3445555432211 12212333333 233 45555477899999863
No 302
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.54 E-value=0.073 Score=51.67 Aligned_cols=234 Identities=15% Similarity=0.115 Sum_probs=119.5
Q ss_pred ceEEEEEEecCCcc-EEEEEeCCCcEEEEECCCCCCCCCceE----EeccCCCCEEEEEEecC---CCCEEEEEE-C---
Q 009380 236 RITQMKFLPCSDVR-MVVAGSKLGNITFWNLDSQQDEDNGIY----LFRTHLGPISGIVTQQY---CLSKIFTSC-Y--- 303 (536)
Q Consensus 236 ~I~~v~~~p~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~----~~~~h~~~V~~l~~~~~---~~~~l~s~s-~--- 303 (536)
.-..|+|.| +|+ +++ +...|.|++++..... ...+. .+.........|+|+|+ + ..|+.+. .
T Consensus 19 ~P~~i~~~p--dG~~l~V-~e~~G~i~~~~~~g~~--~~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lYv~~~~~~~ 92 (353)
T 2g8s_A 19 HPWALAFLP--DNHGMLI-TLRGGELRHWQAGKGL--SAPLSGVPDVWAHGQGGLLDVVLAPDFAQS-RRIWLSYSEVGD 92 (353)
T ss_dssp SEEEEEECS--TTCCEEE-EETTTEEEEEETTTEE--CCCCBSCCCCCCSTTCSEEEEEECTTHHHH-CEEEEEEEEECS
T ss_pred CcEEEEEcC--CCCEEEE-EeCCceEEEEeCCCce--eeEecCCcccccCCCCCceeEEECCCCCCC-CEEEEEEeCCCC
Confidence 467999999 998 554 4567999999854210 01111 11122345789999995 4 4554443 2
Q ss_pred ----CCeEEEEECCCC-----eEEEee---c----CCCceeEEEecCCCCCEEEEEECC--------------CeEEEEE
Q 009380 304 ----DGLIRLMDAEKE-----VFDLVY---S----SEYAVFSLSQQPNNVNTLYFGEGQ--------------GGLNIWD 353 (536)
Q Consensus 304 ----dg~I~vwd~~~~-----~~~~~~---~----~~~~i~~l~~~~~~~~~l~~g~~d--------------g~i~i~d 353 (536)
...|..|++... ....++ . .......|.|.|++ .|+++..+ |.|.-+|
T Consensus 93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG--YLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS--EEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC--cEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 235666766532 111121 1 11224679999998 45544433 5677777
Q ss_pred CCCCc------------cceeEeccCCCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCC------------------
Q 009380 354 VRSRK------------SATEWLLHEARINTIDFNPRNPNIMATSS-TDGTACIWDLRSMAT------------------ 402 (536)
Q Consensus 354 ~~~~~------------~~~~~~~h~~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~~~~------------------ 402 (536)
....- ....+..--.....++|+|....++++-. .++.=.|.-+..+..
T Consensus 171 ~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~ 250 (353)
T 2g8s_A 171 DQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIP 250 (353)
T ss_dssp TTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred CCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccC
Confidence 65320 12223212234678999994334444322 122223322222211
Q ss_pred --------CCCCcceeecccCceeEEEEcc-------CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEE
Q 009380 403 --------DKPEPMKVLSHKRAVHSAYFSP-------SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRA 467 (536)
Q Consensus 403 --------~~~~~~~~~~~~~~v~~l~~sp-------~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (536)
....+.....+...+..+.|.. +|.++++.-..+.|...++...+............ .....+
T Consensus 251 ~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~rp~~v 328 (353)
T 2g8s_A 251 EAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRG--QRIRDV 328 (353)
T ss_dssp TCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGC--CCEEEE
T ss_pred cccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCC--CceeEE
Confidence 0011122223445677788864 46677666677778888776543222211111111 122336
Q ss_pred EEcCCCCEEEEE
Q 009380 468 IWGWDDSCVFIG 479 (536)
Q Consensus 468 ~~s~~g~~l~~g 479 (536)
++.|||.++++.
T Consensus 329 ~~~pdG~lyv~t 340 (353)
T 2g8s_A 329 RTGPDGYLYVLT 340 (353)
T ss_dssp EECTTSCEEEEE
T ss_pred EECCCCcEEEEE
Confidence 678888765543
No 303
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.43 E-value=0.02 Score=55.46 Aligned_cols=198 Identities=11% Similarity=0.105 Sum_probs=113.4
Q ss_pred ceEEEEEEecCCccEEEEE------------eCCCcEEEEECCCCCCCCCceEEecc-----CCCCEEEEEEecC--CCC
Q 009380 236 RITQMKFLPCSDVRMVVAG------------SKLGNITFWNLDSQQDEDNGIYLFRT-----HLGPISGIVTQQY--CLS 296 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg------------~~dg~v~iwd~~~~~~~~~~~~~~~~-----h~~~V~~l~~~~~--~~~ 296 (536)
..-.+...| +|..++++ ..+|.|.++|+.+.......+ .+.+ .......|.+.++ +..
T Consensus 51 G~EDi~~~~--~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~ 127 (355)
T 3sre_A 51 GSEDLEILP--NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTV 127 (355)
T ss_dssp CCCEEEECT--TSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCE
T ss_pred CcceeEEcC--CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcE
Confidence 345566667 66554444 268999999987532111111 2222 2346778888773 423
Q ss_pred EEEEEEC---CCeEEEEECCC--CeEEEe--ecC--CCceeEEEecCCCCCEEEEEEC------------------CCeE
Q 009380 297 KIFTSCY---DGLIRLMDAEK--EVFDLV--YSS--EYAVFSLSQQPNNVNTLYFGEG------------------QGGL 349 (536)
Q Consensus 297 ~l~s~s~---dg~I~vwd~~~--~~~~~~--~~~--~~~i~~l~~~~~~~~~l~~g~~------------------dg~i 349 (536)
+|+.+.. +.+|.+|++.. +....+ +.+ -...+.+.+.+++ . +++++. .|.|
T Consensus 128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-~-fyvt~~~~ftd~~~~~~e~~~~~~~g~v 205 (355)
T 3sre_A 128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-H-FYATNDHYFIDPYLKSWEMHLGLAWSFV 205 (355)
T ss_dssp EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-E-EEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-C-EEecCCcEeCCcccccchhhccCCccEE
Confidence 5666533 46777877654 332222 222 2457889999887 4 444432 2556
Q ss_pred EEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCe
Q 009380 350 NIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSS 428 (536)
Q Consensus 350 ~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~ 428 (536)
..+|. ++ +..+...-..-+.|+|+|++..++++-+..+.|..||+.... ..............-.+++++ +|++
T Consensus 206 yr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g--~l~~~~~~~~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 206 TYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW--TLTPLRVLSFDTLVDNISVDPVTGDL 280 (355)
T ss_dssp EEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS--CEEEEEEEECSSEEEEEEECTTTCCE
T ss_pred EEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCC--cEecCEEEeCCCCCceEEEeCCCCcE
Confidence 66665 32 333333345678999999986555666667899999987421 011111223346677889998 5987
Q ss_pred EEEEeCCC-cEEEEeC
Q 009380 429 LATTSFDD-TIGIWSG 443 (536)
Q Consensus 429 l~t~s~dg-~I~iwd~ 443 (536)
.+++..++ .|..|+.
T Consensus 281 wva~~~~g~~v~~~~P 296 (355)
T 3sre_A 281 WVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEEEESCHHHHHSCCT
T ss_pred EEEecCCceEEEEECC
Confidence 77666543 4444443
No 304
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.38 E-value=0.15 Score=57.49 Aligned_cols=297 Identities=8% Similarity=0.013 Sum_probs=142.1
Q ss_pred cceEEecccccCcccccccc--CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCce---EEeccCCCCEEEE
Q 009380 214 GSCVDIGSLTLKPENIARIM--PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGI---YLFRTHLGPISGI 288 (536)
Q Consensus 214 dg~v~lw~~~~~~~~~~~~~--~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~---~~~~~h~~~V~~l 288 (536)
|+.++|+++..-........ .....++.+...+...+|..|-.||.+.-+.++... +... ..+.+ ..++.=.
T Consensus 581 d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~t--g~l~d~r~~~LG-~~pv~L~ 657 (1158)
T 3ei3_A 581 DISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIET--GLLSDRKKVTLG-TQPTVLR 657 (1158)
T ss_dssp TTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTT--CCEEEEEEEECC-SSCCEEE
T ss_pred CCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCC--CccccceeEEcC-CCceEEE
Confidence 77888888742111111111 123455555443355789999999998777765421 1111 12233 3455544
Q ss_pred EEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCcee-EEEecCCC-CCEEEEEECCCeEEEEECCCCcc--ceeEe
Q 009380 289 VTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF-SLSQQPNN-VNTLYFGEGQGGLNIWDVRSRKS--ATEWL 364 (536)
Q Consensus 289 ~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~-~l~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~--~~~~~ 364 (536)
.|...+...++++| +....++.-+ +.+...--.-..+. ...|+... ++-++..+ ++.++|..+..-.. +.++.
T Consensus 658 ~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip 734 (1158)
T 3ei3_A 658 TFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP 734 (1158)
T ss_dssp EEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE
T ss_pred EEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEe
Confidence 45444423444444 4444444433 33222211112333 33343321 23455444 45699988754332 23333
Q ss_pred ccCCCeEEEEEecCCCCEEEEEeC------C------------------------------------------CcEEEEe
Q 009380 365 LHEARINTIDFNPRNPNIMATSST------D------------------------------------------GTACIWD 396 (536)
Q Consensus 365 ~h~~~i~~i~~~p~~~~~l~s~s~------d------------------------------------------g~i~iwd 396 (536)
-...+..|+++|....+++..+. + +.|++.|
T Consensus 735 -L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lid 813 (1158)
T 3ei3_A 735 -LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIID 813 (1158)
T ss_dssp -CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEE
T ss_pred -CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEe
Confidence 34678889999866433332221 0 1255555
Q ss_pred CCCCCCCCCCcceee--cccCceeEEE---EccC-CCeEEEEe----------CCCcEEEEeCCCCCcceEEeccCCCCc
Q 009380 397 LRSMATDKPEPMKVL--SHKRAVHSAY---FSPS-GSSLATTS----------FDDTIGIWSGVNFENTSMIHHNNQTGR 460 (536)
Q Consensus 397 l~~~~~~~~~~~~~~--~~~~~v~~l~---~sp~-g~~l~t~s----------~dg~I~iwd~~~~~~~~~~~~~~~~~~ 460 (536)
..+.+ ..... .....+.+++ |..+ ..+|++|+ ..|.|.+|++.+.+ +..+ +......
T Consensus 814 p~t~~-----~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-L~lv-~~~~v~g 886 (1158)
T 3ei3_A 814 QHTFE-----VLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-LQTV-AEKEVKG 886 (1158)
T ss_dssp TTTCC-----EEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-EEEE-EEEEESS
T ss_pred CCCCe-----EEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-EEEE-EEEEcCC
Confidence 54432 11111 2223344444 3322 46888876 34779999987432 2222 2222222
Q ss_pred eeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC-ceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380 461 WISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP-YISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533 (536)
Q Consensus 461 ~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~-~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW 533 (536)
.+..++ .| +| +|++|- ...|++|++...+.+. .... ....+...+.. .+++++.|..-..|.++
T Consensus 887 ~v~al~-~~--~g-~Lla~i-g~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~---~~~~I~vgD~~~Sv~~~ 951 (1158)
T 3ei3_A 887 AVYSMV-EF--NG-KLLASI-NSTVRLYEWTTEKELR-TECNHYNNIMALYLKT---KGDFILVGDLMRSVLLL 951 (1158)
T ss_dssp CEEEEE-EE--TT-EEEEEE-TTEEEEEEECTTSCEE-EEEEECCCSCEEEEEE---ETTEEEEEESSBCEEEE
T ss_pred cCEEEe-ee--CC-EEEEEc-CCEEEEEECCCCceEE-EEeeccccEEEEEEec---cCCEEEEEEhhheEEEE
Confidence 334332 23 45 444443 4689999997665433 2110 11111122322 24777777765555553
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.36 E-value=0.1 Score=49.18 Aligned_cols=254 Identities=8% Similarity=0.044 Sum_probs=151.2
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCC
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNV 337 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~ 337 (536)
.+|.|.|+.... ...+.-..- -+.-.+|.. +.|+--. ..+++++|+++......+.....|.-=.|-..
T Consensus 49 ~~VvIiDl~n~~---~~~Rrpi~A----dsAIMnP~~-~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~-- 117 (365)
T 2xzh_A 49 AQVVIIDMNDPS---NPIRRPISA----DSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-- 117 (365)
T ss_dssp EEEEEEETTSTT---SCEEEECCC----SEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSS--
T ss_pred CEEEEEECCCCC---Ccccccccc----ceeeeCCCc-cEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCC--
Confidence 378999998742 222222111 133457875 6555554 78999999999887777777778887788765
Q ss_pred CEEEEEECCCeEEEEECCC-CccceeEeccC----CCeEEEEEecCCCCEEEEEe------CCCcEEEEeCCCCCCCCCC
Q 009380 338 NTLYFGEGQGGLNIWDVRS-RKSATEWLLHE----ARINTIDFNPRNPNIMATSS------TDGTACIWDLRSMATDKPE 406 (536)
Q Consensus 338 ~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h~----~~i~~i~~~p~~~~~l~s~s------~dg~i~iwdl~~~~~~~~~ 406 (536)
+.|+..+.. .|+.|++.. ..+...+..|. ..|..-..+++...++++|- -.|.+.+|..... .
T Consensus 118 ~~L~lVT~t-aVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-----~ 191 (365)
T 2xzh_A 118 NTVALVTDN-AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----V 191 (365)
T ss_dssp SEEEEEESS-EEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-----E
T ss_pred CeEEEEcCC-cEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-----c
Confidence 577777766 899999975 34556665443 45666777777644444443 1377889998763 3
Q ss_pred cceeecccCceeEEEEccC---CCeEEEEeC---CCcEEEEeCCCC---Ccce---EE--eccC-CCCceeeeeEEEEcC
Q 009380 407 PMKVLSHKRAVHSAYFSPS---GSSLATTSF---DDTIGIWSGVNF---ENTS---MI--HHNN-QTGRWISSFRAIWGW 471 (536)
Q Consensus 407 ~~~~~~~~~~v~~l~~sp~---g~~l~t~s~---dg~I~iwd~~~~---~~~~---~~--~~~~-~~~~~~~~~~~~~s~ 471 (536)
...+.+|......+.+.-+ .++|+.+.. .+.++|.++... .+.. .. .... .... ..+.+..|+
T Consensus 192 sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~D--FPVamqvs~ 269 (365)
T 2xzh_A 192 SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND--FPVAMQISE 269 (365)
T ss_dssp EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTC--CEEEEEEET
T ss_pred cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCC--ceEEEEecc
Confidence 4445567655443333221 123333332 257999988432 1111 11 1111 1111 122355677
Q ss_pred CCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380 472 DDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533 (536)
Q Consensus 472 ~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW 533 (536)
.-..++.-+.-|.|++||+.++.++..-.-....+..+ +.+. ...-+++.+..|.|.--
T Consensus 270 kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~t--a~~~-~~~Gi~~Vnr~GqVl~v 328 (365)
T 2xzh_A 270 KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT--APHE-ATAGIIGVNRKGQVLSV 328 (365)
T ss_dssp TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE--EEEG-GGTEEEEEETTCEEEEE
T ss_pred cCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEe--cccC-CCCcEEEEcCCCEEEEE
Confidence 76788889999999999999999887655433333322 2222 22445566677776543
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.35 E-value=0.0098 Score=56.29 Aligned_cols=229 Identities=10% Similarity=0.041 Sum_probs=111.8
Q ss_pred CccEEEEEe-CC-----CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-----CeEEEEECCCC
Q 009380 247 DVRMVVAGS-KL-----GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-----GLIRLMDAEKE 315 (536)
Q Consensus 247 ~~~~l~tg~-~d-----g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-----g~I~vwd~~~~ 315 (536)
++.+++.|+ .+ ..+.+||+.+.. ...+..+....... ++.. .++ .+++.|+.+ ..+.+||+.+.
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~-~~~~-~~~-~l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQE--WSFLPSITRKRRYV-ASVS-LHD-RIYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTE--EEECCCCSSCCBSC-EEEE-ETT-EEEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCe--EEeCCCCChhhccc-cEEE-ECC-EEEEEcCCCCCccCceEEEEECCCC
Confidence 455666666 32 367888887532 11111111111111 2222 234 677777755 46899999887
Q ss_pred e---EEEeecCC--CceeEEEecCCCCCEEEEEECC-----CeEEEEECCCCccceeEeccC-CCeEEEEEecCCCCEEE
Q 009380 316 V---FDLVYSSE--YAVFSLSQQPNNVNTLYFGEGQ-----GGLNIWDVRSRKSATEWLLHE-ARINTIDFNPRNPNIMA 384 (536)
Q Consensus 316 ~---~~~~~~~~--~~i~~l~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~h~-~~i~~i~~~p~~~~~l~ 384 (536)
. ...+.... ..-.+++.. ++ .+++.|+.+ ..+.+||+.+.+-...-.... ..-.+++.. ++ .+++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL-GD-MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SG-VIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE-TT-EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TT-EEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE-CC-EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CC-EEEE
Confidence 6 55443211 111122222 33 566676643 368899988765322211111 111222222 24 6777
Q ss_pred EEeCC-----CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-----CcEEEEeCCCCCcceEEec
Q 009380 385 TSSTD-----GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-----DTIGIWSGVNFENTSMIHH 454 (536)
Q Consensus 385 s~s~d-----g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-----g~I~iwd~~~~~~~~~~~~ 454 (536)
.|+.+ ..+.+||+.+.+-. .+............+.+ ++.+++.|+.+ ..+.+||+.+.+-... .
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~--~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~-~- 238 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWT--NVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV-T- 238 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEE--EECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEE-C-
T ss_pred ECCCCCCcccceEEEEeCCCCcEE--eCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEEC-C-
Confidence 77654 45889998774210 00000011111122222 56777777764 4689999876542221 1
Q ss_pred cCCCCceeeeeEEEEcCCCCEEEEEcCC-----CcEEEEcCCcc
Q 009380 455 NNQTGRWISSFRAIWGWDDSCVFIGNMT-----RTVEVISPAQR 493 (536)
Q Consensus 455 ~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v~d~~~~ 493 (536)
..+..+.... + ...++.+++.|+.+ ..|.+||..+.
T Consensus 239 ~~p~~r~~~~--~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 239 SMTTPRCYVG--A-TVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp CCSSCCBSCE--E-EEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CCCCccccee--E-EEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 1111111111 1 12266677777765 35788888765
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.34 E-value=0.12 Score=50.09 Aligned_cols=230 Identities=10% Similarity=0.025 Sum_probs=118.2
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec---cCCCCEEEEEEecC---CCCEEEEEEC-C----
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR---THLGPISGIVTQQY---CLSKIFTSCY-D---- 304 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~---~h~~~V~~l~~~~~---~~~~l~s~s~-d---- 304 (536)
.-..++|.| +|.++++ ...|.|.+++ .. . ...+..+. ........|+|+|+ + ..|+.+.. .
T Consensus 32 ~P~~ia~~p--dG~l~V~-e~~g~I~~i~-~g-~--~~~~~~~~v~~~g~~~p~gia~~pdf~~~-g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 32 VPWALAFLP--DGGMLIA-ERPGRIRLFR-EG-R--LSTYAELSVYHRGESGLLGLALHPRFPQE-PYVYAYRTVAEGGL 103 (352)
T ss_dssp CEEEEEECT--TSCEEEE-ETTTEEEEEE-TT-E--EEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEECTTSS
T ss_pred CceEEEEcC--CCeEEEE-eCCCeEEEEE-CC-C--ccEeecceEeecCCCCceeEEECCCCCCC-CEEEEEEecCCCCC
Confidence 457899999 9986555 5569999998 31 1 11222111 12356889999998 5 45554443 2
Q ss_pred -CeEEEEECCCCeE---EEe---ec----CCCceeEEEecCCCCCEEEEEEC-------------CCeEEEEECCCC---
Q 009380 305 -GLIRLMDAEKEVF---DLV---YS----SEYAVFSLSQQPNNVNTLYFGEG-------------QGGLNIWDVRSR--- 357 (536)
Q Consensus 305 -g~I~vwd~~~~~~---~~~---~~----~~~~i~~l~~~~~~~~~l~~g~~-------------dg~i~i~d~~~~--- 357 (536)
+.|..|+...+.. ..+ .. .......++|.|++ .++++.+. .|.|..+|....
T Consensus 104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~ 182 (352)
T 2ism_A 104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAP 182 (352)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCT
T ss_pred ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCC
Confidence 6788888775421 111 11 11234689999998 55444322 256777776430
Q ss_pred ---------ccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcE------EEEeCCCCCCC-------------CCCcc
Q 009380 358 ---------KSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTA------CIWDLRSMATD-------------KPEPM 408 (536)
Q Consensus 358 ---------~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i------~iwdl~~~~~~-------------~~~~~ 408 (536)
.....+. ++ .....++|+|+...++++-.....+ .|.-+..+..- ...+.
T Consensus 183 ~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 183 GNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 1112222 22 3356789999443555544333321 12222222200 01122
Q ss_pred eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcce----EEeccCCCCceeeeeEEEEcCCCCEEEEE
Q 009380 409 KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTS----MIHHNNQTGRWISSFRAIWGWDDSCVFIG 479 (536)
Q Consensus 409 ~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~g~~l~~g 479 (536)
....+......++| .+|.++++.-..+.|...++....... ........++ ...+++.|||.++++.
T Consensus 262 ~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~r---p~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 262 YFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGR---LREVQVGPDGALYVTT 332 (352)
T ss_dssp EECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCC---EEEEEECTTSCEEEEE
T ss_pred EecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCC---eeEEEECCCCcEEEEE
Confidence 22233345667777 467666665566778777765433210 0011011122 2336678888665554
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.31 E-value=0.016 Score=54.75 Aligned_cols=221 Identities=10% Similarity=0.033 Sum_probs=109.0
Q ss_pred CEEEEEE-CC-----CeEEEEECCCCeEEEeecCCC--ceeEEEecCCCCCEEEEEECC-----CeEEEEECCCCc---c
Q 009380 296 SKIFTSC-YD-----GLIRLMDAEKEVFDLVYSSEY--AVFSLSQQPNNVNTLYFGEGQ-----GGLNIWDVRSRK---S 359 (536)
Q Consensus 296 ~~l~s~s-~d-----g~I~vwd~~~~~~~~~~~~~~--~i~~l~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~---~ 359 (536)
.+++.|+ .+ ..+.+||+.+.....+..... .-.+++.. ++ .+++.|+.+ ..+.+||+.+.+ -
T Consensus 16 ~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 16 VLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HD-RIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp EEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred EEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE-CC-EEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 4555555 22 468899998887655432211 11122222 33 577777754 368999998776 2
Q ss_pred cee--EeccCCCeEEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEE
Q 009380 360 ATE--WLLHEARINTIDFNPRNPNIMATSSTD-----GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATT 432 (536)
Q Consensus 360 ~~~--~~~h~~~i~~i~~~p~~~~~l~s~s~d-----g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~ 432 (536)
... +...... .+++.. ++ .+++.|+.+ ..+.+||+.+.+- ...........-.++.. -++.+++.|
T Consensus 94 ~~~~~~p~~r~~-~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~r~~~~~~~-~~~~iyv~G 166 (301)
T 2vpj_A 94 YSVAPMNVRRGL-AGATTL-GD-MIYVSGGFDGSRRHTSMERYDPNIDQW---SMLGDMQTAREGAGLVV-ASGVIYCLG 166 (301)
T ss_dssp EEECCCSSCCBS-CEEEEE-TT-EEEEECCBCSSCBCCEEEEEETTTTEE---EEEEECSSCCBSCEEEE-ETTEEEEEC
T ss_pred EECCCCCCCccc-eeEEEE-CC-EEEEEcccCCCcccceEEEEcCCCCeE---EECCCCCCCcccceEEE-ECCEEEEEC
Confidence 211 1111111 122222 24 677777644 3588899876421 00111111111112222 267777777
Q ss_pred eCC-----CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-----CcEEEEcCCcccc--ceecc
Q 009380 433 SFD-----DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-----RTVEVISPAQRRS--VATLQ 500 (536)
Q Consensus 433 s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v~d~~~~~~--~~~l~ 500 (536)
+.+ ..+.+||+.+.+-... . ..+..+.... + ...++.+++.|+.+ ..+.+||+.+.+- +..+.
T Consensus 167 G~~~~~~~~~~~~~d~~~~~W~~~-~-~~p~~r~~~~--~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 167 GYDGLNILNSVEKYDPHTGHWTNV-T-PMATKRSGAG--V-ALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp CBCSSCBCCCEEEEETTTTEEEEE-C-CCSSCCBSCE--E-EEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred CCCCCcccceEEEEeCCCCcEEeC-C-CCCcccccce--E-EEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 754 4588999876532221 1 1111111111 1 12256677777764 4689999877632 22222
Q ss_pred CCceeeeeeeEeecCCCCCEEEEEccC-----CeEEEEec
Q 009380 501 SPYISAIPCRFHAHPHQVGTLAGATGG-----GQVYVWTS 535 (536)
Q Consensus 501 ~~~~~~~~~~~~~~p~~~~~lasgs~D-----g~v~iW~~ 535 (536)
...... ..+.. ++.+++.|+.+ ..|.+||.
T Consensus 242 ~~r~~~--~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 242 TPRCYV--GATVL---RGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp SCCBSC--EEEEE---TTEEEEECCBCSSSBEEEEEEEET
T ss_pred Ccccce--eEEEE---CCEEEEEcCcCCCcccccEEEEcC
Confidence 111111 12222 34677777765 35677775
No 309
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.27 E-value=0.017 Score=54.65 Aligned_cols=229 Identities=10% Similarity=0.099 Sum_probs=110.5
Q ss_pred ccEEEEEeCC----CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-----CeEEEEECCCCeEE
Q 009380 248 VRMVVAGSKL----GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-----GLIRLMDAEKEVFD 318 (536)
Q Consensus 248 ~~~l~tg~~d----g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-----g~I~vwd~~~~~~~ 318 (536)
+.+++.|+.+ ..+.+||+.+.. ...+..+...... .+++.. ++ .+++.|+.+ ..+.+||..+....
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~-~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEER--WHQVAELPSRRCR-AGMVYM-AG-LVFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTE--EEEECCCSSCCBS-CEEEEE-TT-EEEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCc--EeEcccCCccccc-ceEEEE-CC-EEEEEeCcCCCccccceEEECCCCCcee
Confidence 3456666543 357778877521 1111111111111 122222 33 666777654 35889999988766
Q ss_pred EeecCCC--ceeEEEecCCCCCEEEEEECCC-----eEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCC-
Q 009380 319 LVYSSEY--AVFSLSQQPNNVNTLYFGEGQG-----GLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTD- 389 (536)
Q Consensus 319 ~~~~~~~--~i~~l~~~~~~~~~l~~g~~dg-----~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~d- 389 (536)
.+..... .-.+++.. ++ .+++.|+.++ .+.+||+.+.+-...-. .....-.+++.. ++ .+++.|+.+
T Consensus 91 ~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~ 166 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL-NG-LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GG-LLYAVGGYDV 166 (302)
T ss_dssp EECCCSSCCBSCEEEEE-TT-EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEECCEET
T ss_pred eCCCCCccccceEEEEE-CC-EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CC-EEEEEeCCCC
Confidence 5543211 11122222 33 5777777553 58889988764322111 011111222333 23 577776643
Q ss_pred ------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-----CcEEEEeCCCCCcceEEeccCCC
Q 009380 390 ------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-----DTIGIWSGVNFENTSMIHHNNQT 458 (536)
Q Consensus 390 ------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-----g~I~iwd~~~~~~~~~~~~~~~~ 458 (536)
..+.+||+.+..-. ..............+.+ ++.+++.|+.+ ..+.+||+.+.+-... . ..+.
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~-~~~~ 240 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWT--YIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV-A-DMNM 240 (302)
T ss_dssp TTTEECCCEEEEETTTTEEE--EECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEE-C-CCSS
T ss_pred CCCccccEEEEEeCCCCcEE--ECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeC-C-CCCC
Confidence 35889998764210 00000111111122222 57777777764 3688999876532221 1 1111
Q ss_pred CceeeeeEEEEcCCCCEEEEEcCCC-----cEEEEcCCccc
Q 009380 459 GRWISSFRAIWGWDDSCVFIGNMTR-----TVEVISPAQRR 494 (536)
Q Consensus 459 ~~~~~~~~~~~s~~g~~l~~gs~dg-----~I~v~d~~~~~ 494 (536)
.+.-.. + ...++.+++.|+.++ .|.+||..+.+
T Consensus 241 ~r~~~~--~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 241 CRRNAG--V-CAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCBSCE--E-EEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ccccCe--E-EEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 111111 1 122667777777653 48889887653
No 310
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.18 E-value=0.16 Score=47.86 Aligned_cols=219 Identities=11% Similarity=0.149 Sum_probs=135.4
Q ss_pred cceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC----CCEEEEE
Q 009380 214 GSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL----GPISGIV 289 (536)
Q Consensus 214 dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~----~~V~~l~ 289 (536)
...+.++|+..+........+..|.-=.|-. + +.|+--+ +..|+-|++... ..+...|..|. ..|..-.
T Consensus 86 g~~LQiFnletK~klks~~~~e~VvfWkWis--~-~~L~lVT-~taVyHWs~~~~---s~P~kvFdR~~~L~~~QIInY~ 158 (365)
T 2xzh_A 86 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--L-NTVALVT-DNAVYHWSMEGE---SQPVKMFDRHSSLAGCQIINYR 158 (365)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCEEEEEECS--S-SEEEEEE-SSEEEEEESSTT---CCCEEEEECCGGGTTCEEEEEE
T ss_pred CCeEEEechHHhhhhcceecCCccEEEEecC--C-CeEEEEc-CCcEEEEcccCC---CCCceeeecchhcccceEEEEE
Confidence 4689999987766544444577888778875 3 3444444 358999999752 45666666553 4466667
Q ss_pred EecCCCCEEEEEE-------CCCeEEEEECCCCeEEEeecCCCceeEEEecCC--CCCEEEEEECC---CeEEEEECCCC
Q 009380 290 TQQYCLSKIFTSC-------YDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPN--NVNTLYFGEGQ---GGLNIWDVRSR 357 (536)
Q Consensus 290 ~~~~~~~~l~s~s-------~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~--~~~~l~~g~~d---g~i~i~d~~~~ 357 (536)
.+++. ++++..+ -.|.+.+|..+.+....+.+|......+...-+ ..++++.+... +.+++.++...
T Consensus 159 ~d~~~-kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~ 237 (365)
T 2xzh_A 159 TDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 237 (365)
T ss_dssp ECTTS-CEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSC
T ss_pred ECCCC-CEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC
Confidence 77777 6655443 247899999999988888887665555444322 11345554432 68999998543
Q ss_pred ---ccc------eeEec---cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC
Q 009380 358 ---KSA------TEWLL---HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS 425 (536)
Q Consensus 358 ---~~~------~~~~~---h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~ 425 (536)
... ..+.. ..+---++..++.. .++..-+.-|.|++||+.++. .+....-....|...+.+.+
T Consensus 238 ~~~~~~f~kk~vdi~fppea~~DFPVamqvs~ky-gviyviTK~G~ihlyDleTgt----~i~~nrIS~d~iF~ta~~~~ 312 (365)
T 2xzh_A 238 PTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGT----CIYMNRISGETIFVTAPHEA 312 (365)
T ss_dssp CTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEEEGG
T ss_pred CCCCCCcccccceeeCCccccCCceEEEEecccC-CEEEEEeCCcEEEEEEcccCc----EEEEeccCCCceEEecccCC
Confidence 111 11111 23445567777755 477777888999999999974 33333334455554444443
Q ss_pred CCeEEEEeCCCcEEEEeCCC
Q 009380 426 GSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 426 g~~l~t~s~dg~I~iwd~~~ 445 (536)
..=+++....|.|.-..++.
T Consensus 313 ~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 313 TAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp GTEEEEEETTCEEEEEEECT
T ss_pred CCcEEEEcCCCEEEEEEECc
Confidence 33455555677666555544
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.17 E-value=0.071 Score=51.76 Aligned_cols=230 Identities=11% Similarity=-0.020 Sum_probs=118.0
Q ss_pred ccceeeeecCCCCcccccccccccccccccccceEEecccccCccc-----cccccCCceEEEEEEecCC----ccEEEE
Q 009380 183 FNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-----IARIMPGRITQMKFLPCSD----VRMVVA 253 (536)
Q Consensus 183 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-----~~~~~~~~I~~v~~~p~~~----~~~l~t 253 (536)
...-..+.|.++|+++..... |.|.+++ ...... +...-......|+|+| + +.++++
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~-----------g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~p--df~~~g~lYv~ 95 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERP-----------GRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHP--RFPQEPYVYAY 95 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETT-----------TEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEE
T ss_pred CCCceEEEEcCCCeEEEEeCC-----------CeEEEEE-CCCccEeecceEeecCCCCceeEEECC--CCCCCCEEEEE
Confidence 345578899999997775422 4444444 111111 1111135688999999 7 344444
Q ss_pred EeCC-----CcEEEEECCCCCC-CCCce-EEec---cCCCCEEEEEEecCCCCEEEEEEC-------------CCeEEEE
Q 009380 254 GSKL-----GNITFWNLDSQQD-EDNGI-YLFR---THLGPISGIVTQQYCLSKIFTSCY-------------DGLIRLM 310 (536)
Q Consensus 254 g~~d-----g~v~iwd~~~~~~-~~~~~-~~~~---~h~~~V~~l~~~~~~~~~l~s~s~-------------dg~I~vw 310 (536)
-... +.|..|+...... ....+ ..+. ........|+|.|++ .++++.+. .|.|..+
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri 174 (352)
T 2ism_A 96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRL 174 (352)
T ss_dssp EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEE
T ss_pred EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEE
Confidence 3332 5677787763210 01111 1132 111123689999998 66665432 2566666
Q ss_pred ECCCC-------------eE-EEeecCCCceeEEEecCCCCCEEEEEECCCe--------EEEEECCCCc----------
Q 009380 311 DAEKE-------------VF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG--------LNIWDVRSRK---------- 358 (536)
Q Consensus 311 d~~~~-------------~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~--------i~i~d~~~~~---------- 358 (536)
+.... .. ....++ .....++|+|+...++++-..... |.+. ..+.
T Consensus 175 ~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~ 251 (352)
T 2ism_A 175 TPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGR 251 (352)
T ss_dssp CTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSC
T ss_pred cCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCC
Confidence 66541 11 111222 346788999944355554433332 3333 2221
Q ss_pred --------cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC--CCCcceeecccCceeEEEEccCCCe
Q 009380 359 --------SATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD--KPEPMKVLSHKRAVHSAYFSPSGSS 428 (536)
Q Consensus 359 --------~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~--~~~~~~~~~~~~~v~~l~~sp~g~~ 428 (536)
++..+ .+......++|. ++ .++++.-..+.|...++...... ......+......+..+++.|+|.+
T Consensus 252 ~~~~~~~~p~~~~-~~~~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~l 328 (352)
T 2ism_A 252 GNDPRYRDPLYFW-PQGFPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGAL 328 (352)
T ss_dssp CCCTTSCCCSEEC-TTCCCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCE
T ss_pred CCCCCCcCCeEec-CCCCCCcceEEE-CC-EEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcE
Confidence 12223 223345677874 34 56666656677877777643200 0001122223357889999999976
Q ss_pred EEEEe
Q 009380 429 LATTS 433 (536)
Q Consensus 429 l~t~s 433 (536)
+++..
T Consensus 329 yv~~~ 333 (352)
T 2ism_A 329 YVTTS 333 (352)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 66654
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.15 E-value=0.029 Score=53.12 Aligned_cols=223 Identities=9% Similarity=-0.016 Sum_probs=109.2
Q ss_pred CEEEEEEC--CCeEEEEECCCCeEEEeecCCC--ceeEEEecCCCCCEEEEEECC----CeEEEEECCCCccceeEeccC
Q 009380 296 SKIFTSCY--DGLIRLMDAEKEVFDLVYSSEY--AVFSLSQQPNNVNTLYFGEGQ----GGLNIWDVRSRKSATEWLLHE 367 (536)
Q Consensus 296 ~~l~s~s~--dg~I~vwd~~~~~~~~~~~~~~--~i~~l~~~~~~~~~l~~g~~d----g~i~i~d~~~~~~~~~~~~h~ 367 (536)
.+++.|+. ...+.+||..+.....+..... .-.+++.. ++ .+++.|+.+ ..+.+||+.+.+-...-....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW-DN-VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE-TT-EEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE-CC-EEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555554 3578899999887665432211 11122222 33 567777654 578999988765322211111
Q ss_pred C-CeEEEEEecCCCCEEEEEeCC------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC------
Q 009380 368 A-RINTIDFNPRNPNIMATSSTD------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF------ 434 (536)
Q Consensus 368 ~-~i~~i~~~p~~~~~l~s~s~d------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~------ 434 (536)
. .-.+++.. ++ .+++.|+.+ ..+.+||+.+.+-. ..............+. -++.+++.|+.
T Consensus 91 ~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~--~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 91 PRDSLAACAA-EG-KIYTSGGSEVGNSALYLFECYDTRTESWH--TKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVS 164 (306)
T ss_dssp CCBSCEEEEE-TT-EEEEECCBBTTBSCCCCEEEEETTTTEEE--EECCCSSCCBSCEEEE--ETTEEEEECCEESCTTT
T ss_pred cccceeEEEE-CC-EEEEECCCCCCCcEeeeEEEEeCCCCceE--eCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCc
Confidence 1 11122222 24 677777755 45889998874210 0000000111111222 25666666663
Q ss_pred ---CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-----CcEEEEcCCccc--cceeccCCce
Q 009380 435 ---DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-----RTVEVISPAQRR--SVATLQSPYI 504 (536)
Q Consensus 435 ---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v~d~~~~~--~~~~l~~~~~ 504 (536)
-..+.+||+.+.+-... . ..+..+.-.. ++ .-++++++.|+.+ ..+.+||..+.+ .+..+.....
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~-~-~~p~~r~~~~--~~-~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 239 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTEL-C-PMIEARKNHG--LV-FVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV 239 (306)
T ss_dssp CEECCCEEEEETTTTEEEEE-C-CCSSCCBSCE--EE-EETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS
T ss_pred ccccceEEEeCCCCCeEEEC-C-Cccchhhcce--EE-EECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc
Confidence 34588999876532221 1 1111111111 11 1256677777654 458899987753 2222222111
Q ss_pred eeeeeeEeecCCCCCEEEEEccC-----CeEEEEecC
Q 009380 505 SAIPCRFHAHPHQVGTLAGATGG-----GQVYVWTSD 536 (536)
Q Consensus 505 ~~~~~~~~~~p~~~~~lasgs~D-----g~v~iW~~d 536 (536)
.. ..+.. ++.+++.|+.+ ..+.+||.+
T Consensus 240 ~~--~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 240 TV--KCAAV---GSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp CC--EEEEE---TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred ce--eEEEE---CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 11 12222 44677777754 457777753
No 313
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.14 E-value=0.024 Score=53.59 Aligned_cols=222 Identities=13% Similarity=0.055 Sum_probs=106.9
Q ss_pred CEEEEEECC----CeEEEEECCCCeEEEeecCCCc--eeEEEecCCCCCEEEEEECC-----CeEEEEECCCCcccee--
Q 009380 296 SKIFTSCYD----GLIRLMDAEKEVFDLVYSSEYA--VFSLSQQPNNVNTLYFGEGQ-----GGLNIWDVRSRKSATE-- 362 (536)
Q Consensus 296 ~~l~s~s~d----g~I~vwd~~~~~~~~~~~~~~~--i~~l~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~~~~~-- 362 (536)
.+++.|+.+ ..+.+||+.+.....+.....+ -.+++.. ++ .+++.|+.+ ..+.+||..+.+-...
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM-AG-LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE-CC-EEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 344555543 4578899888776554321111 1122222 33 567777654 3588999887643211
Q ss_pred EeccCCCeEEEEEecCCCCEEEEEeCCC-----cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC--
Q 009380 363 WLLHEARINTIDFNPRNPNIMATSSTDG-----TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-- 435 (536)
Q Consensus 363 ~~~h~~~i~~i~~~p~~~~~l~s~s~dg-----~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-- 435 (536)
+...... .+++.. ++ .+++.|+.++ .+.+||+.+.+-. .. ........-.+++. -++.+++.|+.+
T Consensus 95 ~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~--~~-~~~p~~r~~~~~~~-~~~~iyv~GG~~~~ 167 (302)
T 2xn4_A 95 MRDRRST-LGAAVL-NG-LLYAVGGFDGSTGLSSVEAYNIKSNEWF--HV-APMNTRRSSVGVGV-VGGLLYAVGGYDVA 167 (302)
T ss_dssp CSSCCBS-CEEEEE-TT-EEEEEEEECSSCEEEEEEEEETTTTEEE--EE-CCCSSCCBSCEEEE-ETTEEEEECCEETT
T ss_pred CCccccc-eEEEEE-CC-EEEEEcCCCCCccCceEEEEeCCCCeEe--ec-CCCCCcccCceEEE-ECCEEEEEeCCCCC
Confidence 1111111 222222 24 6777777553 4778888764210 00 00011111112222 256667776643
Q ss_pred -----CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-----CcEEEEcCCcccc--ceeccCCc
Q 009380 436 -----DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-----RTVEVISPAQRRS--VATLQSPY 503 (536)
Q Consensus 436 -----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v~d~~~~~~--~~~l~~~~ 503 (536)
..+.+||+.+.+-... . ..+..+.... ++ ..++.+++.|+.+ ..+.+||..+.+- +..+....
T Consensus 168 ~~~~~~~~~~yd~~~~~W~~~-~-~~p~~r~~~~--~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r 242 (302)
T 2xn4_A 168 SRQCLSTVECYNATTNEWTYI-A-EMSTRRSGAG--VG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR 242 (302)
T ss_dssp TTEECCCEEEEETTTTEEEEE-C-CCSSCCBSCE--EE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred CCccccEEEEEeCCCCcEEEC-C-CCcccccccc--EE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcc
Confidence 3488999876532221 1 1111111111 11 2256777787764 3688999877532 22222111
Q ss_pred eeeeeeeEeecCCCCCEEEEEccCC-----eEEEEecC
Q 009380 504 ISAIPCRFHAHPHQVGTLAGATGGG-----QVYVWTSD 536 (536)
Q Consensus 504 ~~~~~~~~~~~p~~~~~lasgs~Dg-----~v~iW~~d 536 (536)
... ..+.. ++.+++.|+.++ .|.+||.+
T Consensus 243 ~~~--~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 243 RNA--GVCAV---NGLLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp BSC--EEEEE---TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred ccC--eEEEE---CCEEEEECCcCCCcccccEEEEcCC
Confidence 111 11222 456777777654 37777753
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.02 E-value=0.035 Score=52.57 Aligned_cols=227 Identities=7% Similarity=-0.039 Sum_probs=110.7
Q ss_pred cEEEEEeC--CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC----CeEEEEECCCCeEEEeec
Q 009380 249 RMVVAGSK--LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD----GLIRLMDAEKEVFDLVYS 322 (536)
Q Consensus 249 ~~l~tg~~--dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d----g~I~vwd~~~~~~~~~~~ 322 (536)
.+++.|+. ...+.+||..+.. ...+..+......-..+. -++ .+++.|+.+ ..+.+||+.+.....+..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~--~~~-~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYS--WTDIRCPFEKRRDAACVF--WDN-VVYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTE--EEECCCCSCCCBSCEEEE--ETT-EEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCC--EecCCCCCcccceeEEEE--ECC-EEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 45666664 3578888887632 111111111111112222 243 666777654 678899999887665543
Q ss_pred CCCc--eeEEEecCCCCCEEEEEECC------CeEEEEECCCCccceeEecc-CCCeEEEEEecCCCCEEEEEeC-----
Q 009380 323 SEYA--VFSLSQQPNNVNTLYFGEGQ------GGLNIWDVRSRKSATEWLLH-EARINTIDFNPRNPNIMATSST----- 388 (536)
Q Consensus 323 ~~~~--i~~l~~~~~~~~~l~~g~~d------g~i~i~d~~~~~~~~~~~~h-~~~i~~i~~~p~~~~~l~s~s~----- 388 (536)
...+ -.+++.. ++ .+++.|+.+ ..+.+||+.+.+-...-... ...-.+++.. ++ .+++.|+.
T Consensus 88 ~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 88 PPTPRDSLAACAA-EG-KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NG-LIYVCGGSLGNNV 163 (306)
T ss_dssp CSSCCBSCEEEEE-TT-EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEECCEESCTT
T ss_pred CCccccceeEEEE-CC-EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CC-EEEEECCCCCCCC
Confidence 2111 1122222 33 567777754 46899998876432211111 1111122222 23 56666653
Q ss_pred ----CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-----CcEEEEeCCCCCcceEEeccCCCC
Q 009380 389 ----DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-----DTIGIWSGVNFENTSMIHHNNQTG 459 (536)
Q Consensus 389 ----dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~ 459 (536)
-..+.+||+.+..-. .+........-.++... ++.+++.|+.+ ..+.+||+.+.+-... . ..+..
T Consensus 164 ~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~-~~p~~ 237 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWT---ELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-S-PMPWK 237 (306)
T ss_dssp TCEECCCEEEEETTTTEEE---EECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEEC-C-CCSCC
T ss_pred cccccceEEEeCCCCCeEE---ECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-C-CCCCC
Confidence 345889998874210 00001111111122222 56677777654 3588999876432111 1 11111
Q ss_pred ceeeeeEEEEcCCCCEEEEEcCC-----CcEEEEcCCcc
Q 009380 460 RWISSFRAIWGWDDSCVFIGNMT-----RTVEVISPAQR 493 (536)
Q Consensus 460 ~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v~d~~~~ 493 (536)
+.-.. ++ .-++.+++.|+.+ ..+.+||..+.
T Consensus 238 r~~~~--~~-~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 238 GVTVK--CA-AVGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp BSCCE--EE-EETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred cccee--EE-EECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 11111 11 1266778888754 46888988775
No 315
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.99 E-value=0.29 Score=47.37 Aligned_cols=231 Identities=12% Similarity=0.006 Sum_probs=120.2
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCC-ceEEe---ccCCCCEEEEEEecC---CCCEEEEEEC----C
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDN-GIYLF---RTHLGPISGIVTQQY---CLSKIFTSCY----D 304 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~-~~~~~---~~h~~~V~~l~~~~~---~~~~l~s~s~----d 304 (536)
....|+|.| +|.++++ ..+|.|.+++.. +. .+..+ .........|+|+|+ + ..|+.+.. +
T Consensus 30 ~P~~ia~~p--dG~l~V~-e~~g~I~~~d~~-----G~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lyv~~~~~~~~ 100 (354)
T 3a9g_A 30 VPWSIAPLG--GGRYLVT-ERPGRLVLISPS-----GKKLVASFDVANVGEAGLLGLALHPEFPKK-SWVYLYASYFAEG 100 (354)
T ss_dssp CEEEEEEEE--TTEEEEE-ETTTEEEEECSS-----CEEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEEECGG
T ss_pred CCeEEEEcC--CCeEEEE-eCCCEEEEEeCC-----CceEeeccceeecCCCceeeEEeCCCCCcC-CEEEEEEeccCCC
Confidence 467899999 8885555 556999988632 22 22221 112346889999997 4 45554433 3
Q ss_pred ----CeEEEEECCCC--e---EEEe---ec--CCCceeEEEecCCCCCEEEEEEC-------------CCeEEEEECCCC
Q 009380 305 ----GLIRLMDAEKE--V---FDLV---YS--SEYAVFSLSQQPNNVNTLYFGEG-------------QGGLNIWDVRSR 357 (536)
Q Consensus 305 ----g~I~vwd~~~~--~---~~~~---~~--~~~~i~~l~~~~~~~~~l~~g~~-------------dg~i~i~d~~~~ 357 (536)
..|..|+.... . ...+ .. .......|.|.|++ .++++.+. .|.|..++....
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~ 179 (354)
T 3a9g_A 101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGR 179 (354)
T ss_dssp GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence 67888887654 1 1111 11 11235679999998 55444322 256776665421
Q ss_pred c-------cceeEe-ccCCCeEEEEEecCCCCEEEEEeCCC---cEEEEeCCCCCC----------C---CCCcceee-c
Q 009380 358 K-------SATEWL-LHEARINTIDFNPRNPNIMATSSTDG---TACIWDLRSMAT----------D---KPEPMKVL-S 412 (536)
Q Consensus 358 ~-------~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg---~i~iwdl~~~~~----------~---~~~~~~~~-~ 412 (536)
- ....+. ++. ....|+|+|+...++++-.... .|.+.. .+.. . ...+.... .
T Consensus 180 ~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 256 (354)
T 3a9g_A 180 PPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS 256 (354)
T ss_dssp CCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence 0 112222 332 3467999994435555443222 233332 2210 0 01122222 2
Q ss_pred ccCceeEEEEc-------cCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc
Q 009380 413 HKRAVHSAYFS-------PSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN 480 (536)
Q Consensus 413 ~~~~v~~l~~s-------p~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs 480 (536)
.......++|. .+|.++++.-..+.|...++............ ..+.......+++.|||.++++..
T Consensus 257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~-~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTF-FKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEE-CTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeee-ccCCCCCeeEEEECCCCcEEEEEe
Confidence 23467788884 46776766666778888887643222111100 001111223366788886655543
No 316
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.95 E-value=0.059 Score=52.11 Aligned_cols=166 Identities=12% Similarity=0.102 Sum_probs=91.5
Q ss_pred eEEEeecCCCceeEEEecCCCCCEEEEEE-------------CCCeEEEEECCCCc-cceeEe--c-----cCCCeEEEE
Q 009380 316 VFDLVYSSEYAVFSLSQQPNNVNTLYFGE-------------GQGGLNIWDVRSRK-SATEWL--L-----HEARINTID 374 (536)
Q Consensus 316 ~~~~~~~~~~~i~~l~~~~~~~~~l~~g~-------------~dg~i~i~d~~~~~-~~~~~~--~-----h~~~i~~i~ 374 (536)
.+..+.+.......+...+++ .+++++ .+|.|.++|+.+.. ....+. + ..-....|.
T Consensus 41 ~C~~i~~~~~G~EDi~~~~~G--~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~ 118 (355)
T 3sre_A 41 NCNLVKGIDNGSEDLEILPNG--LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGIS 118 (355)
T ss_dssp CEEECTTCCSCCCEEEECTTS--EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEE
T ss_pred CCEEeCCCCCCcceeEEcCCC--eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeE
Confidence 333333323455667777765 555554 68999999987431 122222 2 224677888
Q ss_pred EecC--CCC-EEEEEeC--CCcEEEEeCCCCCCCCCCcceeec--ccCceeEEEEccCCCeEEEEeC-------------
Q 009380 375 FNPR--NPN-IMATSST--DGTACIWDLRSMATDKPEPMKVLS--HKRAVHSAYFSPSGSSLATTSF------------- 434 (536)
Q Consensus 375 ~~p~--~~~-~l~s~s~--dg~i~iwdl~~~~~~~~~~~~~~~--~~~~v~~l~~sp~g~~l~t~s~------------- 434 (536)
+.++ +.. ++++-.. +.+|.+|++...... ........ .-...+.+.+.++|.++++...
T Consensus 119 ~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~ 197 (355)
T 3sre_A 119 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMH 197 (355)
T ss_dssp EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE-EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHH
T ss_pred EEECCCCcEEEEEEECCCCCCeEEEEEEECCCCE-EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhh
Confidence 8763 432 4444333 467888887653211 11111122 2346789999999987766541
Q ss_pred ----CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc-CCCcEEEEcCCc
Q 009380 435 ----DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN-MTRTVEVISPAQ 492 (536)
Q Consensus 435 ----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs-~dg~I~v~d~~~ 492 (536)
.|.|..||. .+ ...+...- ...--++|+||++.|+++. ..+.|..|++..
T Consensus 198 ~~~~~g~vyr~d~--~~-~~~~~~~l-----~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 198 LGLAWSFVTYYSP--ND-VRVVAEGF-----DFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp TTCCCEEEEEECT--TC-CEEEEEEE-----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ccCCccEEEEEEC--Ce-EEEeecCC-----cccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 244555554 22 22221110 1122378999998876654 568899999863
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.91 E-value=0.045 Score=52.07 Aligned_cols=224 Identities=8% Similarity=0.066 Sum_probs=108.9
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC----C-------CeEEEEECCCCeEE
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY----D-------GLIRLMDAEKEVFD 318 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~----d-------g~I~vwd~~~~~~~ 318 (536)
+++.|+ ..+.+||..+.. .. ...+..............++ .+++.|+. + ..+.+||..+....
T Consensus 7 l~~~GG--~~~~~yd~~~~~--W~-~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 80 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANE--CY-CASLSSQVPKNHVSLVTKEN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL 80 (315)
T ss_dssp EEEEET--TEEEEEETTTTE--EE-EEECCCCSCSSEEEEECTTC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred EEEEcC--CceEEECCCCCe--Ee-cCCCCCCCCccceEEEEECC-EEEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence 455666 578999988632 11 12222111122222233344 77777774 1 12778999888765
Q ss_pred EeecCCCce--eEEEecCCCCCEEEEEECC--------CeEEEEECCCCccc--eeEeccCCCeEEEEEecCCCCEEEEE
Q 009380 319 LVYSSEYAV--FSLSQQPNNVNTLYFGEGQ--------GGLNIWDVRSRKSA--TEWLLHEARINTIDFNPRNPNIMATS 386 (536)
Q Consensus 319 ~~~~~~~~i--~~l~~~~~~~~~l~~g~~d--------g~i~i~d~~~~~~~--~~~~~h~~~i~~i~~~p~~~~~l~s~ 386 (536)
.+.....+- .+++.. ++ .+++.|+.+ ..+.+||+.+.+-. ..+...... .+++.. ++ .+++.|
T Consensus 81 ~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~iyv~G 155 (315)
T 4asc_A 81 GMPPLPSPRCLFGLGEA-LN-SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLSH-MD-LVYVIG 155 (315)
T ss_dssp ECCCBSSCEESCEEEEE-TT-EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TT-EEEEEC
T ss_pred ECCCCCcchhceeEEEE-CC-EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEEE-CC-EEEEEe
Confidence 543222111 122222 33 566666632 35899998876421 111111111 222232 23 577777
Q ss_pred eC-C-----CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC-----cEEEEeCCCCCcceEEecc
Q 009380 387 ST-D-----GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD-----TIGIWSGVNFENTSMIHHN 455 (536)
Q Consensus 387 s~-d-----g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg-----~I~iwd~~~~~~~~~~~~~ 455 (536)
+. + ..+.+||+.+.+-.. .............+.+ ++++++.|+.++ .+.+||+.+.+-... . .
T Consensus 156 G~~~~~~~~~~~~~yd~~~~~W~~--~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~-~ 229 (315)
T 4asc_A 156 GKGSDRKCLNKMCVYDPKKFEWKE--LAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF-E-A 229 (315)
T ss_dssp CBCTTSCBCCCEEEEETTTTEEEE--CCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEE-C-C
T ss_pred CCCCCCcccceEEEEeCCCCeEEE--CCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEEC-C-C
Confidence 75 2 468899988742110 0001111111122222 677778887654 488899876532221 1 1
Q ss_pred CCCCceeeeeEEEEcCCCCEEEEEcCC--------------CcEEEEcCCcc
Q 009380 456 NQTGRWISSFRAIWGWDDSCVFIGNMT--------------RTVEVISPAQR 493 (536)
Q Consensus 456 ~~~~~~~~~~~~~~s~~g~~l~~gs~d--------------g~I~v~d~~~~ 493 (536)
.+..+.... ++ .-++.+++.|+.+ ..|.+||+.+.
T Consensus 230 ~p~~r~~~~--~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 230 FPQERSSLS--LV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp CSSCCBSCE--EE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred CCCccccee--EE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 111111111 11 2256677777653 23677887765
No 318
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.89 E-value=0.12 Score=50.60 Aligned_cols=142 Identities=15% Similarity=0.216 Sum_probs=93.1
Q ss_pred CEEEEEECCCeEEEEECCCC-eEEEeecC----CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-----------
Q 009380 296 SKIFTSCYDGLIRLMDAEKE-VFDLVYSS----EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS----------- 359 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~~-~~~~~~~~----~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~----------- 359 (536)
..++.+- ++.||.-++..+ ....+... -..|..+..+|+| ++|+..+.. .|.|..+..+..
T Consensus 33 t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 33 TRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS-SEEEEECSS-EEEEEECCTTCSCCCCHHHHHTT
T ss_pred CEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC-CEEEEecCC-eEEEEEecCccccCccccccccc
Confidence 5555554 577888787733 23222221 2368889999998 788877655 899999874321
Q ss_pred -ceeEec------cCCCeEEEEEecCCCC--EEEEEeCCCcEEEEeCCCCCCCCCCcc-------eeecccCceeEEEEc
Q 009380 360 -ATEWLL------HEARINTIDFNPRNPN--IMATSSTDGTACIWDLRSMATDKPEPM-------KVLSHKRAVHSAYFS 423 (536)
Q Consensus 360 -~~~~~~------h~~~i~~i~~~p~~~~--~l~s~s~dg~i~iwdl~~~~~~~~~~~-------~~~~~~~~v~~l~~s 423 (536)
...+.. ...+|..+.|||-+.+ .|++-..|+.|++||+..... .+..+ ........|.+++|.
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCcchhccccccCCCcccceEEEEEEc
Confidence 113332 2467999999997543 888888999999999987321 11111 111123678899999
Q ss_pred cCCCeEEEEe--CCCcEEEE
Q 009380 424 PSGSSLATTS--FDDTIGIW 441 (536)
Q Consensus 424 p~g~~l~t~s--~dg~I~iw 441 (536)
.++-.|...+ ..|.|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9887777755 77877654
No 319
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.88 E-value=0.029 Score=53.30 Aligned_cols=228 Identities=7% Similarity=0.006 Sum_probs=109.4
Q ss_pred CccEEEEEeCC----CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC----C-----CeEEEEECC
Q 009380 247 DVRMVVAGSKL----GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY----D-----GLIRLMDAE 313 (536)
Q Consensus 247 ~~~~l~tg~~d----g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~----d-----g~I~vwd~~ 313 (536)
++.+++.|+.+ ..+.+||..+.. ...+..+......- +++.. ++ .+++.|+. + ..+.+||+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~-~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGT--WLRLADLQVPRSGL-AGCVV-GG-LLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTE--EEECCCCSSCCBSC-EEEEE-TT-EEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCe--EeECCCCCcccccc-eEEEE-CC-EEEEECCCcCCCCCCeecceEEEECCC
Confidence 55666766632 367888877532 11111111111111 22222 33 56666665 2 468899998
Q ss_pred CCeEEEeecCCC--ceeEEEecCCCCCEEEEEECC-----CeEEEEECCCCccce--eEeccCCCeEEEEEecCCCCEEE
Q 009380 314 KEVFDLVYSSEY--AVFSLSQQPNNVNTLYFGEGQ-----GGLNIWDVRSRKSAT--EWLLHEARINTIDFNPRNPNIMA 384 (536)
Q Consensus 314 ~~~~~~~~~~~~--~i~~l~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~~~~--~~~~h~~~i~~i~~~p~~~~~l~ 384 (536)
+.....+..... .-.+++.. ++ .+++.|+.+ ..+.+||+.+.+-.. .+...... .+++.. ++ .+++
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~iyv 173 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI-DG-HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-VGVAVL-NR-LLYA 173 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE-TT-EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TT-EEEE
T ss_pred CCeEeECCCCCcCccccEEEEE-CC-EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-eEEEEE-CC-EEEE
Confidence 887655432211 11122222 33 566666533 368899988764321 11111111 122222 23 6777
Q ss_pred EEeCC-----CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-----CcEEEEeCCCCCcceEEec
Q 009380 385 TSSTD-----GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-----DTIGIWSGVNFENTSMIHH 454 (536)
Q Consensus 385 s~s~d-----g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-----g~I~iwd~~~~~~~~~~~~ 454 (536)
.|+.+ ..+.+||+.+.+-.... ...........+.+ ++.+++.|+.+ ..+.+||+.+.+-...-
T Consensus 174 ~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-- 247 (308)
T 1zgk_A 174 VGGFDGTNRLNSAECYYPERNEWRMIT--AMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA-- 247 (308)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEECC--CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC--
T ss_pred EeCCCCCCcCceEEEEeCCCCeEeeCC--CCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC--
Confidence 77654 45889998764311000 01111111122233 66777777764 45899998765322111
Q ss_pred cCCCCceeeeeEEEEcCCCCEEEEEcCC-----CcEEEEcCCcc
Q 009380 455 NNQTGRWISSFRAIWGWDDSCVFIGNMT-----RTVEVISPAQR 493 (536)
Q Consensus 455 ~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v~d~~~~ 493 (536)
..+..+.... ++ .-++.+++.|+.+ ..|.+||..+.
T Consensus 248 ~~p~~r~~~~--~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 248 PMKHRRSALG--IT-VHQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CCSSCCBSCE--EE-EETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCCccceE--EE-EECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 1111111111 11 1256677777654 34778887665
No 320
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.85 E-value=0.71 Score=49.75 Aligned_cols=228 Identities=6% Similarity=0.049 Sum_probs=125.7
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK 314 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~ 314 (536)
.|.++...+ ++..|..|+. +-|..++..+ .. ...+. .....|.++....++ .|..|+.+ -+.+++..+
T Consensus 192 ~i~~i~~d~--~~~~lWigt~-~Gl~~~~~~~----~~-~~~~~~l~~~~i~~i~~d~~g--~lWigT~~-Gl~~~~~~~ 260 (758)
T 3ott_A 192 FVNSLLEDT--TRQCVWIGTE-GYLFQYFPST----GQ-IKQTEAFHNNSIKSLALDGNG--DLLAGTDN-GLYVYHNDT 260 (758)
T ss_dssp CEEEEEEET--TTTEEEEEEE-EEEEEEETTT----TE-EEEEEEEEEEEEEEEEECTTC--CEEEEETT-EEEEECCTT
T ss_pred eeEEEEEEC--CCCEEEEEEC-CCCeEEcCCC----Ce-EEeccCCCCCeEEEEEEcCCC--CEEEEeCC-ceeEEecCC
Confidence 488888776 6665555654 4577788764 22 11111 122357777776665 45555544 588889887
Q ss_pred CeEEEeec--------CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-------ccCCCeEEEEEecCC
Q 009380 315 EVFDLVYS--------SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-------LHEARINTIDFNPRN 379 (536)
Q Consensus 315 ~~~~~~~~--------~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-------~h~~~i~~i~~~p~~ 379 (536)
+.+..... ....|.++....++ .|.+|+..| +.++... . ....+. .....|.++....+|
T Consensus 261 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWiGT~~G-l~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g 335 (758)
T 3ott_A 261 TPLQHIIHDSRNIQSLTNNIIWNIFADQEH--NIWLGTDYG-ISLSRYN-S-ALQFIPISQITGTGDGNQFYSLFRDSKG 335 (758)
T ss_dssp SCCEEECCCTTCTTSCSCSCEEEEEECTTC--CEEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTC
T ss_pred CcEEEEEcCCCCcCcCCcCeEEEEEEcCCC--CEEEEeCCc-ccccccC-C-ceeEEecccCCCCCCCceEEEEEEcCCC
Confidence 66544321 12358888887766 466777776 5554322 1 111211 123468888877766
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec--------ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceE
Q 009380 380 PNIMATSSTDGTACIWDLRSMATDKPEPMKVLS--------HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSM 451 (536)
Q Consensus 380 ~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~--------~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~ 451 (536)
. |..|+.+| +..++..++... ...... ....|.++.-..+|.+ ..|+. +-|..||..+.+...
T Consensus 336 ~--lWiGt~~G-l~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~-~GL~~~~~~~~~~~~- 406 (758)
T 3ott_A 336 F--YWFGGANG-LIRFTDPAGERH---DAIWYRMGDKTYPLSHNRIRHIYEDKEQQL-WIATD-GSINRYDYATRQFIH- 406 (758)
T ss_dssp C--EEEEETTE-EEEESCTTSSCC---CCEEECTTCSSSCCSCSCEEEEEECTTSCE-EEEET-TEEEEEETTTTEEEE-
T ss_pred C--EEEeeCCc-ceeecccccccc---eeEEeccCCcCCCCCCCceEEEEECCCCCE-EEEeC-CcHhhcCcCCCcEEE-
Confidence 3 44445555 667776543210 111111 1246888888888874 44554 469999987654322
Q ss_pred EeccCC----CCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380 452 IHHNNQ----TGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA 491 (536)
Q Consensus 452 ~~~~~~----~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~ 491 (536)
+..... ....+. .+....+| .|.+|+..+-|.+++..
T Consensus 407 ~~~~~~~~~~~~~~v~--~i~~d~~g-~lWigT~~~Gl~~~~~~ 447 (758)
T 3ott_A 407 YNIVDNTGTYNTNWTY--YIFEDTAG-QLWISTCLGGIFVVDKH 447 (758)
T ss_dssp EEEECCC--CBSSSEE--EEEECTTS-EEEEEESSSCEEEEEHH
T ss_pred eecCCCcCCCCCceEE--EEEEcCCC-CEEEEECCCceEEEccc
Confidence 221111 111222 23334454 56677776678888754
No 321
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.83 E-value=0.43 Score=46.86 Aligned_cols=255 Identities=8% Similarity=0.042 Sum_probs=153.5
Q ss_pred CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCC
Q 009380 257 LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNN 336 (536)
Q Consensus 257 dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~ 336 (536)
..+|.|-|+.... ...+.-.. .-+.-.+|.. +.|+--. ..++.++|+++......+.....|.-=.|-..
T Consensus 47 ~~~vvIiDl~~~~---~~~rrpi~----AdsAIMnP~~-~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~- 116 (494)
T 1bpo_A 47 QAQVVIIDMNDPS---NPIRRPIS----ADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL- 116 (494)
T ss_dssp CCEEEEEETTSTT---SCEEEECC----CSEEEECSSS-SCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET-
T ss_pred CCeEEEEECCCCC---cceecccc----cceeeeCCCC-cEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC-
Confidence 3479999998742 22221111 1234567775 5555554 88999999999877777776677777777655
Q ss_pred CCEEEEEECCCeEEEEECCC-CccceeEecc----CCCeEEEEEecCCCCEEEEEe------CCCcEEEEeCCCCCCCCC
Q 009380 337 VNTLYFGEGQGGLNIWDVRS-RKSATEWLLH----EARINTIDFNPRNPNIMATSS------TDGTACIWDLRSMATDKP 405 (536)
Q Consensus 337 ~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h----~~~i~~i~~~p~~~~~l~s~s------~dg~i~iwdl~~~~~~~~ 405 (536)
+.|+..+.. .|+.|++.. ..++..+..| ...|..-..+++...++++|- -.|.+.+|.....
T Consensus 117 -~~l~lVT~t-aVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~----- 189 (494)
T 1bpo_A 117 -NTVALVTDN-AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK----- 189 (494)
T ss_dssp -TEEEEECSS-EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-----
T ss_pred -CeEEEEcCC-eeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-----
Confidence 467776665 899999974 3456666544 345667777887743444442 2477889998763
Q ss_pred CcceeecccCceeEEEEccCC---CeEEEEeC---CCcEEEEeCCCC---Ccc---eEEe--ccC-CCCceeeeeEEEEc
Q 009380 406 EPMKVLSHKRAVHSAYFSPSG---SSLATTSF---DDTIGIWSGVNF---ENT---SMIH--HNN-QTGRWISSFRAIWG 470 (536)
Q Consensus 406 ~~~~~~~~~~~v~~l~~sp~g---~~l~t~s~---dg~I~iwd~~~~---~~~---~~~~--~~~-~~~~~~~~~~~~~s 470 (536)
....+.+|......+.+.-+. ..|+.+.. .+.++|.++... .+. .... ... .... ..+.+..+
T Consensus 190 ~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~D--FPvamqvs 267 (494)
T 1bpo_A 190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND--FPVAMQIS 267 (494)
T ss_dssp CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTC--CEEEEEEE
T ss_pred ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccC--ceeEEEec
Confidence 444555776665554443221 23444433 268999988533 111 1111 111 1111 12235567
Q ss_pred CCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380 471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533 (536)
Q Consensus 471 ~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW 533 (536)
+.-..++.-+.-|.|++||+.++.++..-.-....+. .-+.+... .-+++.+..|.|.--
T Consensus 268 ~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF--~t~~~~~~-~Gi~~Vnr~GqVl~v 327 (494)
T 1bpo_A 268 EKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF--VTAPHEAT-AGIIGVNRKGQVLSV 327 (494)
T ss_dssp TTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE--EEEEETTT-TEEEEEETTCEEEEE
T ss_pred ccCCEEEEEecCceEEEEecccceeeeeecccCCceE--EecccCCC-CcEEEEccCceEEEE
Confidence 7777888999999999999999998876553333333 12233322 455666677776543
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.77 E-value=0.05 Score=51.58 Aligned_cols=221 Identities=10% Similarity=0.020 Sum_probs=106.8
Q ss_pred CEEEEEEC----CCeEEEEECCCCeEEEeecCCC--ceeEEEecCCCCCEEEEEEC----C-----CeEEEEECCCCccc
Q 009380 296 SKIFTSCY----DGLIRLMDAEKEVFDLVYSSEY--AVFSLSQQPNNVNTLYFGEG----Q-----GGLNIWDVRSRKSA 360 (536)
Q Consensus 296 ~~l~s~s~----dg~I~vwd~~~~~~~~~~~~~~--~i~~l~~~~~~~~~l~~g~~----d-----g~i~i~d~~~~~~~ 360 (536)
.+++.|+. -..+.+||..+.....+..... .-.+++.. ++ .+++.|+. + ..+.+||+.+.+-.
T Consensus 26 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 26 LIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GG-LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred EEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-CC-EEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 55555553 2468889998887665432111 11122222 33 56666665 2 36889998876422
Q ss_pred e--eEeccCCCeEEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe
Q 009380 361 T--EWLLHEARINTIDFNPRNPNIMATSSTD-----GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS 433 (536)
Q Consensus 361 ~--~~~~h~~~i~~i~~~p~~~~~l~s~s~d-----g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s 433 (536)
. .+....... +++.. ++ .+++.|+.+ ..+.+||+.+.+-.... ...........+.+ ++.+++.|+
T Consensus 104 ~~~~~p~~r~~~-~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r~~~~~~~~--~~~iyv~GG 176 (308)
T 1zgk_A 104 PCAPMSVPRNRI-GVGVI-DG-HIYAVGGSHGCIHHNSVERYEPERDEWHLVA--PMLTRRIGVGVAVL--NRLLYAVGG 176 (308)
T ss_dssp ECCCCSSCCBTC-EEEEE-TT-EEEEECCEETTEECCCEEEEETTTTEEEECC--CCSSCCBSCEEEEE--TTEEEEECC
T ss_pred ECCCCCcCcccc-EEEEE-CC-EEEEEcCCCCCcccccEEEECCCCCeEeECC--CCCccccceEEEEE--CCEEEEEeC
Confidence 1 111111111 22222 24 577776643 35888998764311000 01111111122222 567777777
Q ss_pred CC-----CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-----CcEEEEcCCcccc--ceeccC
Q 009380 434 FD-----DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-----RTVEVISPAQRRS--VATLQS 501 (536)
Q Consensus 434 ~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v~d~~~~~~--~~~l~~ 501 (536)
.+ ..+.+||+.+.+-... . ..+..+.... ++ .-++.+++.|+.+ ..+.+||+.+.+- +..+..
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~-~-~~p~~r~~~~--~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 251 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEWRMI-T-AMNTIRSGAG--VC-VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH 251 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEC-C-CCSSCCBSCE--EE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS
T ss_pred CCCCCcCceEEEEeCCCCeEeeC-C-CCCCccccce--EE-EECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC
Confidence 54 4588999875432211 1 1111111111 11 1266777777664 4689999877532 222221
Q ss_pred CceeeeeeeEeecCCCCCEEEEEccC-----CeEEEEec
Q 009380 502 PYISAIPCRFHAHPHQVGTLAGATGG-----GQVYVWTS 535 (536)
Q Consensus 502 ~~~~~~~~~~~~~p~~~~~lasgs~D-----g~v~iW~~ 535 (536)
..... ..+.. ++.+++.|+.+ ..|.+||+
T Consensus 252 ~r~~~--~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 252 RRSAL--GITVH---QGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp CCBSC--EEEEE---TTEEEEECCBCSSCBCCEEEEEET
T ss_pred Cccce--EEEEE---CCEEEEEcCcCCCcccceEEEEcC
Confidence 11111 11222 44677777654 34677765
No 323
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.77 E-value=0.056 Score=52.38 Aligned_cols=241 Identities=8% Similarity=-0.042 Sum_probs=112.2
Q ss_pred CccEEEEEeCC-CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC-C---------CeEEEEECCCC
Q 009380 247 DVRMVVAGSKL-GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY-D---------GLIRLMDAEKE 315 (536)
Q Consensus 247 ~~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~-d---------g~I~vwd~~~~ 315 (536)
++.+++.|+.+ ..+.+||+.........+..+......-.+++.. ++ .+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-DG-NLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-TT-EEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-CC-EEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56677777644 4688888863111122222222011111122222 34 56666665 2 46889999988
Q ss_pred eEEEeecCC-Cce--eEEEecCCCCCEEEEEECC---------------------------------------CeEEEEE
Q 009380 316 VFDLVYSSE-YAV--FSLSQQPNNVNTLYFGEGQ---------------------------------------GGLNIWD 353 (536)
Q Consensus 316 ~~~~~~~~~-~~i--~~l~~~~~~~~~l~~g~~d---------------------------------------g~i~i~d 353 (536)
....+.... .+- .+++. .++ .+++.|+.+ ..+.+||
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-HNG-KAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-ETT-EEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred cEEECCCCCCcccccceEEE-ECC-EEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 776554322 111 12222 333 677777754 4799999
Q ss_pred CCCCccceeEecc-CCCe-EEEEEecCCCCEEEEEeC------CCcEEEEeC--CCCCCCCCCcceeecccCceeEEEEc
Q 009380 354 VRSRKSATEWLLH-EARI-NTIDFNPRNPNIMATSST------DGTACIWDL--RSMATDKPEPMKVLSHKRAVHSAYFS 423 (536)
Q Consensus 354 ~~~~~~~~~~~~h-~~~i-~~i~~~p~~~~~l~s~s~------dg~i~iwdl--~~~~~~~~~~~~~~~~~~~v~~l~~s 423 (536)
+.+.+-...-... ...- .+++.. +..+++.|+. ...+.+||+ .+.. -..+...........+.+..
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~--W~~~~~~~~~~~~~~~~~~~ 250 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLK--WNKLAPVSSPDGVAGGFAGI 250 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CE--EEECCCSSTTTCCBSCEEEE
T ss_pred CCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCc--EEecCCCCCCcccccceEEE
Confidence 9876532221111 1111 233333 2356777653 245777887 3321 00000010011111111222
Q ss_pred cCCCeEEEEeCC----------------------CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC
Q 009380 424 PSGSSLATTSFD----------------------DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM 481 (536)
Q Consensus 424 p~g~~l~t~s~d----------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~ 481 (536)
.++.+++.|+.+ ..+.+||+.+.+-...-.. +..+.-. .+...++++++.|+.
T Consensus 251 ~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r~~~---~~~~~~~~i~v~GG~ 325 (357)
T 2uvk_A 251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL--SQGRAYG---VSLPWNNSLLIIGGE 325 (357)
T ss_dssp ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC--SSCCBSS---EEEEETTEEEEEEEE
T ss_pred ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC--CCCcccc---eeEEeCCEEEEEeee
Confidence 356777777632 2477899875543222111 1111111 112246778888876
Q ss_pred CC------cEEEEcCCccccceecc
Q 009380 482 TR------TVEVISPAQRRSVATLQ 500 (536)
Q Consensus 482 dg------~I~v~d~~~~~~~~~l~ 500 (536)
++ .|.++++.+++.+....
T Consensus 326 ~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 326 TAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred CCCCCEeeeEEEEEEcCcEeEeeec
Confidence 53 35666888776655443
No 324
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.76 E-value=0.48 Score=46.51 Aligned_cols=263 Identities=10% Similarity=0.063 Sum_probs=158.3
Q ss_pred ceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC
Q 009380 215 SCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC 294 (536)
Q Consensus 215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 294 (536)
..|.+-|+........+. -.--+.-.+| ..+.||-=. ..++.|+|+++ ...+..+.-. ..|.-=.|-..
T Consensus 48 ~~vvIiDl~~~~~~~rrp--i~AdsAIMnP--~~~iiALra-g~~lQiFnle~----K~klks~~~~-e~VvfWkWis~- 116 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRP--ISADSAIMNP--ASKVIALKA-GKTLQIFNIEM----KSKMKAHTMT-DDVTFWKWISL- 116 (494)
T ss_dssp CEEEEEETTSTTSCEEEE--CCCSEEEECS--SSSCEEEEE-TTEEEEEETTT----TEEEEEEECS-SCCCEEEEEET-
T ss_pred CeEEEEECCCCCcceecc--cccceeeeCC--CCcEEEEec-CCeEEEEchHH----hhhhcceecC-CCceEEEecCC-
Confidence 367777774432222222 1233556778 667777655 67999999997 4555555443 34555566654
Q ss_pred CCEEEEEECCCeEEEEECCCC-eEEEeecC-----CCceeEEEecCCCCCEEEEEE------CCCeEEEEECCCCcccee
Q 009380 295 LSKIFTSCYDGLIRLMDAEKE-VFDLVYSS-----EYAVFSLSQQPNNVNTLYFGE------GQGGLNIWDVRSRKSATE 362 (536)
Q Consensus 295 ~~~l~s~s~dg~I~vwd~~~~-~~~~~~~~-----~~~i~~l~~~~~~~~~l~~g~------~dg~i~i~d~~~~~~~~~ 362 (536)
+.|+-.+ +..|+-|+++.. .+..++.. ...|.....+++...++++|- -.|.+.+|..+.+ ..+.
T Consensus 117 -~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ 193 (494)
T 1bpo_A 117 -NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQP 193 (494)
T ss_dssp -TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEE
T ss_pred -CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccch
Confidence 4555554 668999999753 34444432 467888888888844444443 2478899997643 4566
Q ss_pred EeccCCCeEEEEEec--CCCCEEEEEeCC---CcEEEEeCCCC-CCCCCCcc---eee----cccCceeEEEEccCCCeE
Q 009380 363 WLLHEARINTIDFNP--RNPNIMATSSTD---GTACIWDLRSM-ATDKPEPM---KVL----SHKRAVHSAYFSPSGSSL 429 (536)
Q Consensus 363 ~~~h~~~i~~i~~~p--~~~~~l~s~s~d---g~i~iwdl~~~-~~~~~~~~---~~~----~~~~~v~~l~~sp~g~~l 429 (536)
+.+|...-..+.+.. ....+|+.+... +.++|-++... ........ .+. ....-..++..++....+
T Consensus 194 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygvi 273 (494)
T 1bpo_A 194 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV 273 (494)
T ss_dssp ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEE
T ss_pred heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEE
Confidence 677765554444431 111355555543 78999998653 11111111 111 123345678888877889
Q ss_pred EEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccc
Q 009380 430 ATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSV 496 (536)
Q Consensus 430 ~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~ 496 (536)
+..+.-|.|.+||+.++.++..-+.... .+|..+......-+++.+..|.|.-..++....+
T Consensus 274 yviTK~G~i~lyDleTgt~i~~nrIs~~-----~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 274 FLITKYGYIHLYDLETGTCIYMNRISGE-----TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred EEEecCceEEEEecccceeeeeecccCC-----ceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 9999999999999999988776653322 1222333444445666667887777777665544
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.71 E-value=0.16 Score=48.17 Aligned_cols=182 Identities=12% Similarity=-0.012 Sum_probs=89.0
Q ss_pred EEEEEECCCeEEEEECCCCeEEEeecC-C-CceeEEEecCCCCCEEEEEEC-----C------CeEEEEECCCCccce--
Q 009380 297 KIFTSCYDGLIRLMDAEKEVFDLVYSS-E-YAVFSLSQQPNNVNTLYFGEG-----Q------GGLNIWDVRSRKSAT-- 361 (536)
Q Consensus 297 ~l~s~s~dg~I~vwd~~~~~~~~~~~~-~-~~i~~l~~~~~~~~~l~~g~~-----d------g~i~i~d~~~~~~~~-- 361 (536)
+++.|+ ..+.+||..++........ . ..........++ .+++.|+. . ..+.+||..+.+-..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKEN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECC-EEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344444 5789999999876542211 1 111222222344 67788873 1 137888988764311
Q ss_pred eEeccCCCeEEEEEecCCCCEEEEEeCC--------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe
Q 009380 362 EWLLHEARINTIDFNPRNPNIMATSSTD--------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS 433 (536)
Q Consensus 362 ~~~~h~~~i~~i~~~p~~~~~l~s~s~d--------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s 433 (536)
.+...... .+++.. +..+++.|+.+ ..+.+||+.+.+-.. .......... .+++. -++++++.|+
T Consensus 84 ~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~--~~~~p~~r~~-~~~~~-~~~~iyv~GG 156 (315)
T 4asc_A 84 PLPSPRCL-FGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE--SDPLPYVVYG-HTVLS-HMDLVYVIGG 156 (315)
T ss_dssp CBSSCEES-CEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE--CCCCSSCCBS-CEEEE-ETTEEEEECC
T ss_pred CCCcchhc-eeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE--CCCCCCcccc-eeEEE-ECCEEEEEeC
Confidence 11100111 122222 33677777632 458899988742100 0001111111 12222 3566777777
Q ss_pred C-C-----CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC-----cEEEEcCCcc
Q 009380 434 F-D-----DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR-----TVEVISPAQR 493 (536)
Q Consensus 434 ~-d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg-----~I~v~d~~~~ 493 (536)
. + ..+.+||..+.+-... . ..+..+.... + ..-++++++.|+.++ .+.+||..+.
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~-~-~~p~~r~~~~--~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKEL-A-PMQTARSLFG--A-TVHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEEC-C-CCSSCCBSCE--E-EEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred CCCCCcccceEEEEeCCCCeEEEC-C-CCCCchhceE--E-EEECCEEEEEeccCCCCccceEEEEECCCC
Confidence 6 2 3589999876432111 1 1111111111 1 122667777777653 5888998775
No 326
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.68 E-value=0.23 Score=48.15 Aligned_cols=233 Identities=11% Similarity=-0.050 Sum_probs=118.8
Q ss_pred ccceeeeecCCCCcccccccccccccccccccceEEecccccCccccc-----cccCCceEEEEEEecCC----ccEEEE
Q 009380 183 FNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIA-----RIMPGRITQMKFLPCSD----VRMVVA 253 (536)
Q Consensus 183 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~-----~~~~~~I~~v~~~p~~~----~~~l~t 253 (536)
...-+.+.|.++|+++.... +|.|.+++.... ..+. ..-......|+|+| + +.++++
T Consensus 28 l~~P~~ia~~pdG~l~V~e~-----------~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~p--df~~~g~lyv~ 93 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTER-----------PGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHP--EFPKKSWVYLY 93 (354)
T ss_dssp CSCEEEEEEEETTEEEEEET-----------TTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEE
T ss_pred CCCCeEEEEcCCCeEEEEeC-----------CCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCC--CCCcCCEEEEE
Confidence 34567788889998777542 245555542111 1111 11135688999999 6 444444
Q ss_pred EeC---C----CcEEEEECCCCCCC---CCce-EEecc-CCCCEEEEEEecCCCCEEEEEEC-------------CCeEE
Q 009380 254 GSK---L----GNITFWNLDSQQDE---DNGI-YLFRT-HLGPISGIVTQQYCLSKIFTSCY-------------DGLIR 308 (536)
Q Consensus 254 g~~---d----g~v~iwd~~~~~~~---~~~~-~~~~~-h~~~V~~l~~~~~~~~~l~s~s~-------------dg~I~ 308 (536)
-+. + +.|..|+....... ...+ ..+.. .......|.|.|++ .++++.+. .|.|.
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ 172 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKIL 172 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEE
T ss_pred EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEE
Confidence 332 3 56777776642100 0111 11221 11124679999998 66665432 24566
Q ss_pred EEECCCC---------eEEEeecCCCceeEEEecCCCCCEEEEEECCC---eEEEEECCC--------C--------ccc
Q 009380 309 LMDAEKE---------VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG---GLNIWDVRS--------R--------KSA 360 (536)
Q Consensus 309 vwd~~~~---------~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg---~i~i~d~~~--------~--------~~~ 360 (536)
.++.... ......++ .....++|+|+..+++++-.... .|.+...-. + .++
T Consensus 173 ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 251 (354)
T 3a9g_A 173 RVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPV 251 (354)
T ss_dssp EECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred EEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCE
Confidence 6665532 11122222 34678999994435444432221 244432110 0 122
Q ss_pred eeEeccCCCeEEEEEe-------cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEE
Q 009380 361 TEWLLHEARINTIDFN-------PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATT 432 (536)
Q Consensus 361 ~~~~~h~~~i~~i~~~-------p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~ 432 (536)
..+.........+.|. .++ .++++.-..+.|...++..... ......+. .....+..+++.|+|.++++.
T Consensus 252 ~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 252 IDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNME-VRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp EECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGC-EEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred eecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCc-ccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 2231123456788884 334 5666666667888888765210 00011122 224578899999999766655
Q ss_pred e
Q 009380 433 S 433 (536)
Q Consensus 433 s 433 (536)
.
T Consensus 330 ~ 330 (354)
T 3a9g_A 330 S 330 (354)
T ss_dssp C
T ss_pred e
Confidence 3
No 327
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.42 Score=45.74 Aligned_cols=190 Identities=8% Similarity=0.043 Sum_probs=102.9
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEeecCC--CceeEEEec--CCCCCEEEEE--ECCCeEEEEECCCCccceeEec----
Q 009380 296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSE--YAVFSLSQQ--PNNVNTLYFG--EGQGGLNIWDVRSRKSATEWLL---- 365 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~--~~i~~l~~~--~~~~~~l~~g--~~dg~i~i~d~~~~~~~~~~~~---- 365 (536)
..++.++.||.|.-+|..+|+....+... .++....-. +.+ ..++++ +.||.|..+|..+|.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~-~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLET-YETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTS-SEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccC-CcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 57899999999999999999887776544 233322111 112 244444 5899999999988754433321
Q ss_pred cCCCeEE---EEE------ecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCc--------eeEEEEc-----
Q 009380 366 HEARINT---IDF------NPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRA--------VHSAYFS----- 423 (536)
Q Consensus 366 h~~~i~~---i~~------~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~--------v~~l~~s----- 423 (536)
...++.. ... + .+ ..+++|+.+|.+...|+++++ .+-......+ ..|....
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~-~~-g~Vy~Gs~~g~l~ald~~tG~-----~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d 162 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIV-ED-EKVYTGSMRTIMYTINMLNGE-----IISAFGPGSKNGYFGSQSVDCSPEEKIKLQ 162 (339)
T ss_dssp TTCSEEEECC-----------CC-EEEEECEEEEEEEEEETTTCC-----EEEEESTTCBCC------------------
T ss_pred eccccccCCCceeecccccc-cC-CEEEEEecCCEEEEEECCCCc-----EEEEEecCCCcccccccccccccccccccc
Confidence 1122221 000 0 12 478899999999999999975 2222221111 0011110
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCCcceEEecc---CC-CCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccce
Q 009380 424 PSGSSLATTSFDDTIGIWSGVNFENTSMIHHN---NQ-TGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVA 497 (536)
Q Consensus 424 p~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~---~~-~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~ 497 (536)
-.+..|+.+..+..+.+.+ ++++ ...+... .. ....+. -....+.++.+ ++++.||.|..+|..+|..+.
T Consensus 163 ~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~-~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 163 ECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLA-LQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp --CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHH-TTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred cCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccc-cccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 1235677777777777776 4443 2222100 00 000000 00001234555 457788999999988887765
No 328
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.48 E-value=0.44 Score=53.87 Aligned_cols=253 Identities=8% Similarity=0.035 Sum_probs=141.5
Q ss_pred CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCC
Q 009380 258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNV 337 (536)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~ 337 (536)
.+|.|-|+..+. ...+.-. ..-+.-.+|.. +.|+.- ...++.|+|+++......+....+|.-=.|-..
T Consensus 48 ~~vvIidl~~~~---~~~rrpi----~AdsAIMnP~~-~iiALr-ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~-- 116 (1630)
T 1xi4_A 48 AQVVIIDMNDPS---NPIRRPI----SADSAIMNPAS-KVIALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-- 116 (1630)
T ss_pred ceEEEEECCCCC---Ccccccc----cchhhccCCCc-ceEEEe-cCCeEEEeehHHhhhhcccccCCCceEEEecCC--
Confidence 478899988742 1111111 11233456765 444444 478999999998766666666667776677654
Q ss_pred CEEEEEECCCeEEEEECCC-CccceeEecc----CCCeEEEEEecCCCCEEEEEe------CCCcEEEEeCCCCCCCCCC
Q 009380 338 NTLYFGEGQGGLNIWDVRS-RKSATEWLLH----EARINTIDFNPRNPNIMATSS------TDGTACIWDLRSMATDKPE 406 (536)
Q Consensus 338 ~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h----~~~i~~i~~~p~~~~~l~s~s------~dg~i~iwdl~~~~~~~~~ 406 (536)
+.|+..+.. .|+.|++.. ..++..+..| ...|..-..+++...++++|- -.|.+.+|..... .
T Consensus 117 ~~l~lVT~~-aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-----~ 190 (1630)
T 1xi4_A 117 NTVALVTDN-AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----V 190 (1630)
T ss_pred CeeEEEcCC-eEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-----c
Confidence 466666655 899999964 3444445444 456767777787744444443 3478889988763 3
Q ss_pred cceeecccCceeEEEEcc--C-CCeEEEEeC---CCcEEEEeCCCC---CcceE-----EeccC-CCCceeeeeEEEEcC
Q 009380 407 PMKVLSHKRAVHSAYFSP--S-GSSLATTSF---DDTIGIWSGVNF---ENTSM-----IHHNN-QTGRWISSFRAIWGW 471 (536)
Q Consensus 407 ~~~~~~~~~~v~~l~~sp--~-g~~l~t~s~---dg~I~iwd~~~~---~~~~~-----~~~~~-~~~~~~~~~~~~~s~ 471 (536)
...+.+|......+.... . ...++.+.. .+.++|-++... .+... +.... .... ..+.+..++
T Consensus 191 sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~D--fpv~~~vs~ 268 (1630)
T 1xi4_A 191 SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND--FPVAMQISE 268 (1630)
T ss_pred chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccC--cceEEEecc
Confidence 334446665554444431 1 123332222 267888888542 11110 11110 0111 112244566
Q ss_pred CCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEE
Q 009380 472 DDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 532 (536)
Q Consensus 472 ~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~i 532 (536)
.-..++.-+.-|.|++||+.++.++..-.-....+. ..+.+... .-+++.+..|.|.-
T Consensus 269 k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF--~~~~~~~~-~g~~~vnr~G~vl~ 326 (1630)
T 1xi4_A 269 KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF--VTAPHEAT-AGIIGVNRKGQVLS 326 (1630)
T ss_pred ccCEEEEEecCceEEEEecccchhhhhccccCCceE--EeccCCCC-CceEEEcCCceEEE
Confidence 666788888999999999999988765442222222 12223222 33445556666543
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.46 E-value=0.073 Score=47.17 Aligned_cols=134 Identities=12% Similarity=0.050 Sum_probs=79.2
Q ss_pred CEEEEEECCCeEEEEECCCCeE------EEeecC--CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC
Q 009380 296 SKIFTSCYDGLIRLMDAEKEVF------DLVYSS--EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE 367 (536)
Q Consensus 296 ~~l~s~s~dg~I~vwd~~~~~~------~~~~~~--~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~ 367 (536)
.+|+....| +++.=....+.. ....+. =..+..++|+|++ . |++. .+|.++-.+..+.... .+.+..
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G-~-LYaV-~~G~Ly~~~~~t~~~~-~W~~s~ 79 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGG-E-LYGV-LNDKIYKGTPPTHDND-NWMGRA 79 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTS-C-EEEE-ETTEEEEESCCCSTTC-CHHHHC
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCc-c-EEEE-eCCeEEEECCCCCCcc-cccccc
Confidence 567777777 776665555431 122222 2478899999977 4 4444 7788888886553321 111112
Q ss_pred CC--------eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcce--eeccc---CceeEEEEccCCCeEEEEeC
Q 009380 368 AR--------INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMK--VLSHK---RAVHSAYFSPSGSSLATTSF 434 (536)
Q Consensus 368 ~~--------i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~--~~~~~---~~v~~l~~sp~g~~l~t~s~ 434 (536)
.. -.++.|.|++ .+.++ .||.|+-++-.+.... ..+. ..-.. ..+..|.|.|+|.+.++.
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~--~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-- 152 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTD--NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-- 152 (236)
T ss_dssp EEEECSCGGGCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTC--CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--
T ss_pred cEecccccccceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCC--ceeccccEeccCCCCceEEEEECCCceEEEEe--
Confidence 22 3788999987 45555 4699988875442211 1110 01011 467999999999866665
Q ss_pred CCcEEEE
Q 009380 435 DDTIGIW 441 (536)
Q Consensus 435 dg~I~iw 441 (536)
|+.+.-+
T Consensus 153 dg~lyr~ 159 (236)
T 1tl2_A 153 GQQFYKA 159 (236)
T ss_dssp TTEEEEE
T ss_pred CCcEEec
Confidence 7775433
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.44 E-value=0.15 Score=48.34 Aligned_cols=225 Identities=8% Similarity=0.017 Sum_probs=104.6
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCceEEecc-CCCCEEEEEEecCCCCEEEEEEC----CC-------eEEEEECCCCeE
Q 009380 250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRT-HLGPISGIVTQQYCLSKIFTSCY----DG-------LIRLMDAEKEVF 317 (536)
Q Consensus 250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~s~s~----dg-------~I~vwd~~~~~~ 317 (536)
+++.|+. .+.+||..+.. ... ..... ....-.++ ...++ .+++.|+. ++ .+.+||..+...
T Consensus 18 i~~~GG~--~~~~yd~~~~~--W~~-~~~~~~~~r~~~~~-~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 90 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENE--CYL-TALAEQIPRNHSSI-VTQQN-QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW 90 (318)
T ss_dssp EEEECSS--EEEEEETTTTE--EEE-EEECTTSCSSEEEE-ECSSS-CEEEEESSCC-------CCCBEEEEEETTTTEE
T ss_pred hhhcccc--ceEEECCCCCc--eec-ccCCccCCccceEE-EEECC-EEEEECCcccCccccCCCccccEEEEeCCCCcE
Confidence 4455553 37888887632 111 11111 11112222 23344 67777773 12 277889988876
Q ss_pred EEeecCCC--ceeEEEecCCCCCEEEEEECC-------CeEEEEECCCCccceeEeccCCC-eEEEEEecCCCCEEEEEe
Q 009380 318 DLVYSSEY--AVFSLSQQPNNVNTLYFGEGQ-------GGLNIWDVRSRKSATEWLLHEAR-INTIDFNPRNPNIMATSS 387 (536)
Q Consensus 318 ~~~~~~~~--~i~~l~~~~~~~~~l~~g~~d-------g~i~i~d~~~~~~~~~~~~h~~~-i~~i~~~p~~~~~l~s~s 387 (536)
..+..... .-.+++.. ++ .+++.|+.+ ..+.+||+.+.+-...-...... -.+++.. ++ .+++.|+
T Consensus 91 ~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG 166 (318)
T 2woz_A 91 VGLPPLPSARCLFGLGEV-DD-KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH-NG-MIYCLGG 166 (318)
T ss_dssp EECSCBSSCBCSCEEEEE-TT-EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE-TT-EEEEECC
T ss_pred EECCCCCccccccceEEE-CC-EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE-CC-EEEEEcC
Confidence 65432211 11122222 33 577777753 35888998876432111100000 0122222 23 5667776
Q ss_pred C------CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-----CcEEEEeCCCCCcceEEeccC
Q 009380 388 T------DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-----DTIGIWSGVNFENTSMIHHNN 456 (536)
Q Consensus 388 ~------dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-----g~I~iwd~~~~~~~~~~~~~~ 456 (536)
. -..+.+||+.+.+-. .. ........-.+++. -++.+++.|+.+ ..+.+||+.+.+-... . ..
T Consensus 167 ~~~~~~~~~~~~~yd~~~~~W~--~~-~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~-~~ 240 (318)
T 2woz_A 167 KTDDKKCTNRVFIYNPKKGDWK--DL-APMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-T-EF 240 (318)
T ss_dssp EESSSCBCCCEEEEETTTTEEE--EE-CCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-C-CC
T ss_pred CCCCCCccceEEEEcCCCCEEE--EC-CCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-C-CC
Confidence 4 235889998874210 00 00011111112222 256777777654 3477898876532211 1 11
Q ss_pred CCCceeeeeEEEEcCCCCEEEEEcCC--------------CcEEEEcCCccc
Q 009380 457 QTGRWISSFRAIWGWDDSCVFIGNMT--------------RTVEVISPAQRR 494 (536)
Q Consensus 457 ~~~~~~~~~~~~~s~~g~~l~~gs~d--------------g~I~v~d~~~~~ 494 (536)
+..+.... + ...++.+++.|+.+ ..+.+||..+.+
T Consensus 241 p~~r~~~~--~-~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 241 PQERSSIS--L-VSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp SSCCBSCE--E-EEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred CCcccceE--E-EEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 11111111 1 12356677777654 347778876653
No 331
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.11 Score=49.82 Aligned_cols=192 Identities=12% Similarity=0.049 Sum_probs=103.0
Q ss_pred ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC-CCCEEEEEE--ecCCCCEEEEE--ECCCeEEEEECCCCeEEEeec
Q 009380 248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH-LGPISGIVT--QQYCLSKIFTS--CYDGLIRLMDAEKEVFDLVYS 322 (536)
Q Consensus 248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~--~~~~~~~l~s~--s~dg~I~vwd~~~~~~~~~~~ 322 (536)
+.+++.++.||.|.-+|..+ ++....+... ..++....- .+.+ ..++.+ +.||.|..++..+|.....+.
T Consensus 10 ~~~V~v~t~dG~l~Ald~~t----G~~~W~~~~~~~~p~~~~~~~~~~~~-~~~~vv~p~~dG~l~a~~~~~G~~~~~~~ 84 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRN----GHIIWSIEPENFQPLIEIQEPSRLET-YETLIIEPFGDGNIYYFNAHQGLQKLPLS 84 (339)
T ss_dssp EEEEEEEETTSCEEEEETTT----TEEEEEECGGGSCCSEECCCSCTTTS-SEEEEECCSTTTEEEEEETTTEEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCC----CcEEEEecCCccCCcEEecCCccccC-CcEEEEEECCCCEEEEEECCCCcEEeeec
Confidence 35788889999999988877 5555555443 122211110 0112 244444 579999999998885544332
Q ss_pred CCCcee--EEEec-----------CCCCCEEEEEECCCeEEEEECCCCccceeEeccC--CC-----eEEEEEe---c-C
Q 009380 323 SEYAVF--SLSQQ-----------PNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE--AR-----INTIDFN---P-R 378 (536)
Q Consensus 323 ~~~~i~--~l~~~-----------~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~--~~-----i~~i~~~---p-~ 378 (536)
....+. -+... ..+ ..+++|+.+|.+...|+++|+.+..+.... .. ..|.... . .
T Consensus 85 ~~~lv~~SP~~~~~~pvv~~~~~~~~~-g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 85 IRQLVSTSPLHLKTNIVVNDSGKIVED-EKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp HHHHHTTCSEEEECC----------CC-EEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred cccceeccccccCCCceeecccccccC-CEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 111110 01110 022 588999999999999999999988876321 10 0111110 0 1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC-cee-----EEEEccCCCeEEEEeCCCcEEEEeCCCCCcce
Q 009380 379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR-AVH-----SAYFSPSGSSLATTSFDDTIGIWSGVNFENTS 450 (536)
Q Consensus 379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~-~v~-----~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~ 450 (536)
....++.+..+..+.+.+ +++. . .......... .+. +-..+.++.+ ++++.||.|.-+|..++..+.
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~--W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-S--YNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-C--CCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-e--EEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 124677777777777766 4432 1 1111110000 000 0001124665 457889999999988776543
No 332
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.36 E-value=0.43 Score=46.73 Aligned_cols=148 Identities=11% Similarity=0.113 Sum_probs=91.2
Q ss_pred CEEEEEECCCeEEEEECCCCccceeEecc----CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC--------
Q 009380 338 NTLYFGEGQGGLNIWDVRSRKSATEWLLH----EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP-------- 405 (536)
Q Consensus 338 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~h----~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~-------- 405 (536)
.-++++-. +.||..++.....-+.+... -..|..+..+|+| .+||..+ +..|.|..+..+.....
T Consensus 33 t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 33 TRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred CEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCccccccccc
Confidence 45555444 47888887754444444432 2367889999988 6777776 56899999984321111
Q ss_pred Ccceee-c-----ccCceeEEEEcc---CCCeEEEEeCCCcEEEEeCCCCC-cceEEeccCC----CCceeeeeEEEEcC
Q 009380 406 EPMKVL-S-----HKRAVHSAYFSP---SGSSLATTSFDDTIGIWSGVNFE-NTSMIHHNNQ----TGRWISSFRAIWGW 471 (536)
Q Consensus 406 ~~~~~~-~-----~~~~v~~l~~sp---~g~~l~t~s~dg~I~iwd~~~~~-~~~~~~~~~~----~~~~~~~~~~~~s~ 471 (536)
.+.... + ...+|..+.|+| .+..|++-..|+.|++||+.... ....+..... ......+..++|+.
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence 011111 1 256799999999 45789999999999999998522 2222321110 00112233478998
Q ss_pred CCCEEEEEc--CCCcEEEE
Q 009380 472 DDSCVFIGN--MTRTVEVI 488 (536)
Q Consensus 472 ~g~~l~~gs--~dg~I~v~ 488 (536)
++-.|++.+ ..|.|+-.
T Consensus 190 ~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 190 DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TSSCEEEEECTTSCEEEEE
T ss_pred CCcEEEEEecCCCCCEEEE
Confidence 887777754 77877654
No 333
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.19 E-value=0.85 Score=42.91 Aligned_cols=196 Identities=10% Similarity=0.097 Sum_probs=105.3
Q ss_pred EecccccCccccccccCCceEEEEEEecCCccEEEEEeCC--------------CcEEEEECCCCCCCCCceEEeccCCC
Q 009380 218 DIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL--------------GNITFWNLDSQQDEDNGIYLFRTHLG 283 (536)
Q Consensus 218 ~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d--------------g~v~iwd~~~~~~~~~~~~~~~~h~~ 283 (536)
.||.+..+.....+...+.+ --+++ ++.+|.-.... ..|+..+++.. . ...+.. .
T Consensus 38 ~ly~~~~dg~~~~~l~~~~~--~~i~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~----~-~~~l~~--~ 106 (302)
T 3s25_A 38 RLYAMNIDGSNIHKLSNDTA--MYINA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH----G-STVLDP--D 106 (302)
T ss_dssp EEEEEETTSCSCEEEEEEEE--EEEEE--CSSEEEEEEECC------CCSSCCSEEEEEEETTSC----C-CEEEEC--S
T ss_pred eEEEEcCCCCCCEEccCCce--eeEEE--cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC----c-ceEeec--C
Confidence 34555444444444444443 45577 88888776543 35666666642 2 222221 1
Q ss_pred CEEEEEEecCCCCEEEEEE----CCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEEC-CCeEEEEECCCCc
Q 009380 284 PISGIVTQQYCLSKIFTSC----YDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEG-QGGLNIWDVRSRK 358 (536)
Q Consensus 284 ~V~~l~~~~~~~~~l~s~s----~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~-dg~i~i~d~~~~~ 358 (536)
. +..|++++ +.|+-.. .+..|...++.......+..+.. ..+++++ ..|+..+. ...|.+.++..+.
T Consensus 107 ~--~~~~s~~g-~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g-~~iy~t~~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 107 P--CIYASLIG-NYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSD-RYFYYNNPKNGQLYRYDTASQS 178 (302)
T ss_dssp C--EEEEEEET-TEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEET-TEEEEECTTTCCEEEEETTTTE
T ss_pred C--ccEEEEeC-CEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEEC-CEEEEEeCCCceEEEEECCCCC
Confidence 2 23678888 7777665 35567777887665555554433 3456677 45554443 6788888887654
Q ss_pred cceeEeccCCCeEEEEEecCCCCEEEEEeCC-CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC--C
Q 009380 359 SATEWLLHEARINTIDFNPRNPNIMATSSTD-GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF--D 435 (536)
Q Consensus 359 ~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~--d 435 (536)
....+. +... ..++|++..++.+-..+ ..|..-++.... ...+. ...+ ..|+|++.+|+-++. .
T Consensus 179 ~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-----~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~ 245 (302)
T 3s25_A 179 EALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-----PVVLT--EANI--EHYNVYGSLIFYQRGGDN 245 (302)
T ss_dssp EEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-----CEECS--CSCE--EEEEEETTEEEEEECSSS
T ss_pred EEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-----eEEEe--CCCc--ceEEECCCEEEEEECCCC
Confidence 332222 2222 34668885444444333 356666665532 11111 1222 347888888876532 3
Q ss_pred CcEEEEeCCC
Q 009380 436 DTIGIWSGVN 445 (536)
Q Consensus 436 g~I~iwd~~~ 445 (536)
+.|..-++..
T Consensus 246 ~~i~~~~~DG 255 (302)
T 3s25_A 246 PALCVVKNDG 255 (302)
T ss_dssp CEEEEEETTS
T ss_pred cEEEEEECCC
Confidence 5566666643
No 334
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.19 E-value=1.2 Score=44.61 Aligned_cols=103 Identities=15% Similarity=0.113 Sum_probs=59.0
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEecc------CCCCEEEEEEecC---CCCEEEEEEC---
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT------HLGPISGIVTQQY---CLSKIFTSCY--- 303 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~------h~~~V~~l~~~~~---~~~~l~s~s~--- 303 (536)
....|+|.| +|+++++-...+.|++++..++. ...+..+.. .......|+|+|+ + ..|+.+..
T Consensus 28 ~P~~~a~~p--dG~l~V~e~~gg~I~~~~~~~g~--~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~-g~lYv~~s~~~ 102 (454)
T 1cru_A 28 KPHALLWGP--DNQIWLTERATGKILRVNPESGS--VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN-PYIYISGTFKN 102 (454)
T ss_dssp SEEEEEECT--TSCEEEEETTTCEEEEECTTTCC--EEEEEECTTCCCCTTSSCSEEEEEECTTTTTS-CEEEEEEEEEC
T ss_pred CceEEEEcC--CCcEEEEEcCCCEEEEEECCCCc--EeEEecCCccccccCCCCceeEEEECCCcCcC-CEEEEEEeccc
Confidence 457999999 99877775544568888764321 122222221 2456789999995 4 45554432
Q ss_pred ----------CCeEEEEECCCC--e---EEEee---c--CCCceeEEEecCCCCCEEEEEE
Q 009380 304 ----------DGLIRLMDAEKE--V---FDLVY---S--SEYAVFSLSQQPNNVNTLYFGE 344 (536)
Q Consensus 304 ----------dg~I~vwd~~~~--~---~~~~~---~--~~~~i~~l~~~~~~~~~l~~g~ 344 (536)
...|.-|++... . ...++ . .......|.|.|++ .+.++.+
T Consensus 103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G 162 (454)
T 1cru_A 103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG 162 (454)
T ss_dssp TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence 235666665321 1 11121 1 22457889999998 5555433
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.08 E-value=0.44 Score=45.10 Aligned_cols=173 Identities=13% Similarity=0.055 Sum_probs=84.0
Q ss_pred eEEEEECCCCeEEEeecC---CCceeEEEecCCCCCEEEEEEC----CC-------eEEEEECCCCccce--eEeccCCC
Q 009380 306 LIRLMDAEKEVFDLVYSS---EYAVFSLSQQPNNVNTLYFGEG----QG-------GLNIWDVRSRKSAT--EWLLHEAR 369 (536)
Q Consensus 306 ~I~vwd~~~~~~~~~~~~---~~~i~~l~~~~~~~~~l~~g~~----dg-------~i~i~d~~~~~~~~--~~~~h~~~ 369 (536)
.+.+||..+.+....... ...-.+++ ..++ .+++.|+. ++ .+.+||..+.+-.. .+......
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIV-TQQN-QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEE-CSSS-CEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred ceEEECCCCCceecccCCccCCccceEEE-EECC-EEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 478999988876542211 11122222 2333 67777773 11 27788987664321 11111111
Q ss_pred eEEEEEecCCCCEEEEEeCC-------CcEEEEeCCCCCCCC--CCcceeecccCceeEEEEccCCCeEEEEeC------
Q 009380 370 INTIDFNPRNPNIMATSSTD-------GTACIWDLRSMATDK--PEPMKVLSHKRAVHSAYFSPSGSSLATTSF------ 434 (536)
Q Consensus 370 i~~i~~~p~~~~~l~s~s~d-------g~i~iwdl~~~~~~~--~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~------ 434 (536)
.+++.. ++ .+++.|+.+ ..+.+||+.+.+-.. ..+.....| +++. .++.+++.|+.
T Consensus 103 -~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-----~~~~-~~~~iyv~GG~~~~~~~ 173 (318)
T 2woz_A 103 -FGLGEV-DD-KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-----NVIS-HNGMIYCLGGKTDDKKC 173 (318)
T ss_dssp -CEEEEE-TT-EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-----EEEE-ETTEEEEECCEESSSCB
T ss_pred -cceEEE-CC-EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-----EEEE-ECCEEEEEcCCCCCCCc
Confidence 222222 24 677777754 247888887642100 011111122 1222 36677777764
Q ss_pred CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-----CcEEEEcCCccc
Q 009380 435 DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-----RTVEVISPAQRR 494 (536)
Q Consensus 435 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v~d~~~~~ 494 (536)
-..+.+||+.+.+-... . ..+..+.... ++ .-++.+++.|+.+ ..+.+||..+.+
T Consensus 174 ~~~~~~yd~~~~~W~~~-~-~~p~~r~~~~--~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 174 TNRVFIYNPKKGDWKDL-A-PMKTPRSMFG--VA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp CCCEEEEETTTTEEEEE-C-CCSSCCBSCE--EE-EETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred cceEEEEcCCCCEEEEC-C-CCCCCcccce--EE-EECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 23589999876532221 1 1111111111 11 1256677777643 357789987753
No 336
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.08 E-value=1.2 Score=43.58 Aligned_cols=189 Identities=14% Similarity=0.030 Sum_probs=91.7
Q ss_pred ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC----eEEEEECCCCeEEEeec-
Q 009380 248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG----LIRLMDAEKEVFDLVYS- 322 (536)
Q Consensus 248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg----~I~vwd~~~~~~~~~~~- 322 (536)
...|.+|+..| +.+++............. ......|.+|++.|..+..|+.++..| .|...+-.......+..
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~-~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGP-VFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEE-ESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCc-cCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCcc
Confidence 34677777766 555554321100111111 122456999999984335666666555 44443222222222211
Q ss_pred -------------CCCceeEEEecCCC-CCEEEEEECCCeEEEEECCCCccceeEe-------------------ccCCC
Q 009380 323 -------------SEYAVFSLSQQPNN-VNTLYFGEGQGGLNIWDVRSRKSATEWL-------------------LHEAR 369 (536)
Q Consensus 323 -------------~~~~i~~l~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~-------------------~h~~~ 369 (536)
....|.++++.|.+ +..+++++..+.|...+-. ++.-..+. .....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCc
Confidence 11257789998743 4677777777766655322 22211111 01235
Q ss_pred eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc-eee-c--------ccCceeEEEEccC-CCeEEEEeCCCcE
Q 009380 370 INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM-KVL-S--------HKRAVHSAYFSPS-GSSLATTSFDDTI 438 (536)
Q Consensus 370 i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~-~~~-~--------~~~~v~~l~~sp~-g~~l~t~s~dg~I 438 (536)
|.+|.+.|.++..+..+..++.|...+-. ++. -.... ... . ....+.++.++|. ...|++++..+ |
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~t-W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l 255 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFESTDA-GTD-WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-I 255 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEESST-TSS-CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-E
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEECCC-CCC-ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-E
Confidence 78999988543444444434444443211 110 00000 000 0 0135889999985 45666666544 4
Q ss_pred EEEe
Q 009380 439 GIWS 442 (536)
Q Consensus 439 ~iwd 442 (536)
...+
T Consensus 256 ~~s~ 259 (394)
T 3b7f_A 256 YRMD 259 (394)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 4443
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.97 E-value=0.069 Score=47.34 Aligned_cols=145 Identities=10% Similarity=-0.035 Sum_probs=79.8
Q ss_pred CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCc--------eeEEEecCCCCCEEEEEECCCeEEEEEC
Q 009380 283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYA--------VFSLSQQPNNVNTLYFGEGQGGLNIWDV 354 (536)
Q Consensus 283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~--------i~~l~~~~~~~~~l~~g~~dg~i~i~d~ 354 (536)
..+..++|+|++ . |+.. .+|.+.-.+..+......+..... ..++.|.+++ .+.+ + .||.|+-++.
T Consensus 41 ~~~~~laf~P~G-~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYa-v-~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGG-E-LYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNG-YLYA-V-SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTS-C-EEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTS-CEEE-E-ETTEEEEESC
T ss_pred ccceeEEECCCc-c-EEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCC-CEEE-e-CCCEEEEeCC
Confidence 367799999976 5 5554 788877777655322222222222 4789999998 4444 4 5699988876
Q ss_pred CCCccc------eeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC-Ccceee--cccCceeEEEEcc
Q 009380 355 RSRKSA------TEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP-EPMKVL--SHKRAVHSAYFSP 424 (536)
Q Consensus 355 ~~~~~~------~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~-~~~~~~--~~~~~v~~l~~sp 424 (536)
.+...- ..+- .-=..+..|.|.|+| .+.+.. |+.++-+...+.....- ...... ..-.....+.|.+
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCc-eEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 432211 1111 111467999999988 444444 77754433322110000 001111 1222344577898
Q ss_pred CCCeEEEEeCCCcE
Q 009380 425 SGSSLATTSFDDTI 438 (536)
Q Consensus 425 ~g~~l~t~s~dg~I 438 (536)
+|.++++. ++.+
T Consensus 192 ~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 192 VGTLFGVQ--GGKF 203 (236)
T ss_dssp TSCEEEEE--TTEE
T ss_pred CCcEEEEe--CCeE
Confidence 88866665 6633
No 338
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.79 E-value=1.3 Score=41.63 Aligned_cols=210 Identities=9% Similarity=0.039 Sum_probs=114.0
Q ss_pred CccEEEEEe--CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC--------------CeEEEE
Q 009380 247 DVRMVVAGS--KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD--------------GLIRLM 310 (536)
Q Consensus 247 ~~~~l~tg~--~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d--------------g~I~vw 310 (536)
++.+|.... .++.|...+.+. .....+... .+--+++++ .+|+-+... ..|+..
T Consensus 24 ~g~~iy~~n~~d~~~ly~~~~dg-----~~~~~l~~~----~~~~i~~~g-~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i 93 (302)
T 3s25_A 24 SDGEVFFSNTNDNGRLYAMNIDG-----SNIHKLSND----TAMYINADK-NYVYYVRNNNQKITSQTFFSYDRNSLCRI 93 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEEETTS-----CSCEEEEEE----EEEEEEECS-SEEEEEEECC------CCSSCCSEEEEEE
T ss_pred eCCEEEEEeCCCCceEEEEcCCC-----CCCEEccCC----ceeeEEEcC-CEEEEEECCCCcccccceeccCCCeEEEE
Confidence 555555543 245555555542 223333221 134567888 777766543 468888
Q ss_pred ECCCCeEEEeecCCCceeEEEecCCCCCEEEEEE----CCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380 311 DAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE----GQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386 (536)
Q Consensus 311 d~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~----~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~ 386 (536)
++..+....+.... +..|++++ +.|+... .+..|...++.. .....+..+.. ..|++++..+..+.
T Consensus 94 ~~dg~~~~~l~~~~----~~~~s~~g-~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 94 KRNGHGSTVLDPDP----CIYASLIG-NYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNN 163 (302)
T ss_dssp ETTSCCCEEEECSC----EEEEEEET-TEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEEC
T ss_pred eCCCCcceEeecCC----ccEEEEeC-CEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEe
Confidence 88877655544322 23566677 5666655 345666667653 33444543332 45677775555555
Q ss_pred eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC--cEEEEeCCCCCcceEEeccCCCCceeee
Q 009380 387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD--TIGIWSGVNFENTSMIHHNNQTGRWISS 464 (536)
Q Consensus 387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 464 (536)
.....|.+.++.... ...+.. .... ..++|++.+|+-....+ .|..-++.... ...+.. ..+
T Consensus 164 ~g~~~Iy~~~l~g~~-----~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~-----~~~-- 227 (302)
T 3s25_A 164 PKNGQLYRYDTASQS-----EALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE-----ANI-- 227 (302)
T ss_dssp TTTCCEEEEETTTTE-----EEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC-----SCE--
T ss_pred CCCceEEEEECCCCC-----EEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC-----CCc--
Confidence 446788888877642 112222 2222 34668888887766443 56666665443 222211 011
Q ss_pred eEEEEcCCCCEEEEEc--CCCcEEEEcCCccc
Q 009380 465 FRAIWGWDDSCVFIGN--MTRTVEVISPAQRR 494 (536)
Q Consensus 465 ~~~~~s~~g~~l~~gs--~dg~I~v~d~~~~~ 494 (536)
..|+|++.+|+-++ ....|..-++....
T Consensus 228 --~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 228 --EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp --EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred --ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 33677888776542 23567777776543
No 339
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.69 E-value=2.9 Score=44.90 Aligned_cols=227 Identities=10% Similarity=0.116 Sum_probs=124.2
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec-----cCCCCEEEEEEecCCCCEEEEEECCCeEEE
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR-----THLGPISGIVTQQYCLSKIFTSCYDGLIRL 309 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-----~h~~~V~~l~~~~~~~~~l~s~s~dg~I~v 309 (536)
..|.++.. . ++ .|..|+.+ -|..++..+ . ....+. .....|.++....++ . |..++.+ -|..
T Consensus 103 ~~i~~i~~-~--~g-~lWigt~~-Gl~~~~~~~----~-~~~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~-Gl~~ 169 (758)
T 3ott_A 103 TDVRTMAL-Q--GD-TLWLGALN-GLYTYQLQS----R-KLTSFDTRRNGLPNNTIYSIIRTKDN-Q-IYVGTYN-GLCR 169 (758)
T ss_dssp SCEEEEEE-E--TT-EEEEEETT-EEEEEETTT----C-CEEEECHHHHCCSCSCEEEEEECTTC-C-EEEEETT-EEEE
T ss_pred ceEEEEEe-c--CC-cEEEEcCC-cceeEeCCC----C-eEEEeccCCCCcCCCeEEEEEEcCCC-C-EEEEeCC-CHhh
Confidence 45777654 3 55 45556655 577888764 2 222221 123468888777665 4 4445555 4778
Q ss_pred EECCCCeEEEeecC------CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEE
Q 009380 310 MDAEKEVFDLVYSS------EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIM 383 (536)
Q Consensus 310 wd~~~~~~~~~~~~------~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l 383 (536)
++..++.+...... ...|.++....++ ..|.+|+. +.|..+|..+++...........|.+|....++. |
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--l 245 (758)
T 3ott_A 170 YIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGD--L 245 (758)
T ss_dssp EETTTTEEEEECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCC--E
T ss_pred CccCCCceEEecCCCccccccceeEEEEEECCC-CEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCC--E
Confidence 89887765433211 1247888877765 56667774 5688899877653221112234588888777663 4
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCcceee--------cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc
Q 009380 384 ATSSTDGTACIWDLRSMATDKPEPMKVL--------SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN 455 (536)
Q Consensus 384 ~s~s~dg~i~iwdl~~~~~~~~~~~~~~--------~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~ 455 (536)
..|+.+ -|.+++..+.. ..... -....|.++..+.+|. |..|+..| +.++.... ....+...
T Consensus 246 WigT~~-Gl~~~~~~~~~-----~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~--~~~~~~~~ 315 (758)
T 3ott_A 246 LAGTDN-GLYVYHNDTTP-----LQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS--ALQFIPIS 315 (758)
T ss_dssp EEEETT-EEEEECCTTSC-----CEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHH
T ss_pred EEEeCC-ceeEEecCCCc-----EEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC--ceeEEecc
Confidence 444444 48888876532 11111 1234688998888887 55555566 65554321 12222211
Q ss_pred ----CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380 456 ----NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 456 ----~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~ 492 (536)
......+.. +.-..+|. |.+|+.+| +..++..+
T Consensus 316 ~~~~~~~~~~v~~--i~~D~~g~-lWiGt~~G-l~~~~~~~ 352 (758)
T 3ott_A 316 QITGTGDGNQFYS--LFRDSKGF-YWFGGANG-LIRFTDPA 352 (758)
T ss_dssp HHSCSCCCCBEEE--EEECTTCC-EEEEETTE-EEEESCTT
T ss_pred cCCCCCCCceEEE--EEEcCCCC-EEEeeCCc-ceeecccc
Confidence 111222332 33455554 45555554 66676654
No 340
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.68 E-value=0.69 Score=46.87 Aligned_cols=79 Identities=9% Similarity=0.083 Sum_probs=54.9
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC----C--C--CCcceeecccCceeEEEEccCCCeEEEEeCCCcE
Q 009380 367 EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT----D--K--PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTI 438 (536)
Q Consensus 367 ~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~----~--~--~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I 438 (536)
......+.++|||.+++++|-.+.++.++|+++... . . ..+.....-.....+.+|+++|+...+.-.|..|
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceE
Confidence 344567899999977777777899999999985310 0 0 0111122345667889999999655555689999
Q ss_pred EEEeCCC
Q 009380 439 GIWSGVN 445 (536)
Q Consensus 439 ~iwd~~~ 445 (536)
.-|++..
T Consensus 402 vkWni~~ 408 (638)
T 3sbq_A 402 VKWNMEE 408 (638)
T ss_dssp EEEEHHH
T ss_pred EEEeccH
Confidence 9999863
No 341
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.48 E-value=0.61 Score=52.74 Aligned_cols=219 Identities=11% Similarity=0.147 Sum_probs=126.3
Q ss_pred cceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC----CCCEEEEE
Q 009380 214 GSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH----LGPISGIV 289 (536)
Q Consensus 214 dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h----~~~V~~l~ 289 (536)
...+.++++..+........+..|.-=.|-. + +.|+-.+ +..|.-|++... ..++..|..| ...|..-.
T Consensus 85 g~~lQiFnl~~k~klks~~~~e~VvfWkWis--~-~~l~lVT-~~aVyHW~~~~~---s~P~k~fdR~~~L~~~QIinY~ 157 (1630)
T 1xi4_A 85 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--L-NTVALVT-DNAVYHWSMEGE---SQPVKMFDRHSSLAGCQIINYR 157 (1630)
T ss_pred CCeEEEeehHHhhhhcccccCCCceEEEecC--C-CeeEEEc-CCeEEEeccCCC---CccHHHHhcchhcccCeeEEee
Confidence 5689999987665544444567777777764 3 3344333 347999999752 3455555544 34566677
Q ss_pred EecCCCCEEEEEE-------CCCeEEEEECCCCeEEEeecCCCceeEEEec--CCCCCEEEEEEC---CCeEEEEECCCC
Q 009380 290 TQQYCLSKIFTSC-------YDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQ--PNNVNTLYFGEG---QGGLNIWDVRSR 357 (536)
Q Consensus 290 ~~~~~~~~l~s~s-------~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~--~~~~~~l~~g~~---dg~i~i~d~~~~ 357 (536)
.+++. ++++..| -.|.+.+|+.+.+....+.+|......+... +...++++.+.. .+.++|.++...
T Consensus 158 ~d~~~-kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~ 236 (1630)
T 1xi4_A 158 TDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 236 (1630)
T ss_pred eCCCC-CeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCC
Confidence 77777 5555333 3589999999988877777776555444442 222234444433 268999998543
Q ss_pred ---ccc------eeEec---cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC
Q 009380 358 ---KSA------TEWLL---HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS 425 (536)
Q Consensus 358 ---~~~------~~~~~---h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~ 425 (536)
... ..+.. ..+-..++..++.. .++..-+.-|.|.+||+.++.. +....-....|...+.+..
T Consensus 237 ~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~----i~~~ris~~~iF~~~~~~~ 311 (1630)
T 1xi4_A 237 PTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTC----IYMNRISGETIFVTAPHEA 311 (1630)
T ss_pred ccCCCCCccccccccCCcccccCcceEEEecccc-CEEEEEecCceEEEEecccchh----hhhccccCCceEEeccCCC
Confidence 111 11111 12333456667655 3666677789999999999752 2222223334433333332
Q ss_pred CCeEEEEeCCCcEEEEeCCC
Q 009380 426 GSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 426 g~~l~t~s~dg~I~iwd~~~ 445 (536)
..=+++....|.|.-..+..
T Consensus 312 ~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 312 TAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred CCceEEEcCCceEEEEEEcc
Confidence 22344444566555554443
No 342
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.31 E-value=2.1 Score=40.97 Aligned_cols=235 Identities=11% Similarity=0.006 Sum_probs=119.8
Q ss_pred ccceeeeecCCCCcccccccccccccccccccceEEecccccCccc-------cccccCCceEEEEEEec--CCccEEEE
Q 009380 183 FNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-------IARIMPGRITQMKFLPC--SDVRMVVA 253 (536)
Q Consensus 183 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-------~~~~~~~~I~~v~~~p~--~~~~~l~t 253 (536)
.+.-+.+.|.|+|++++... ..|.|.+++....... +...-.+....|+|+|. .++.+.++
T Consensus 31 L~~P~~ia~~pdG~llVter----------~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSR----------DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp CSSEEEEEECTTSCEEEEET----------TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEe----------cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 45567889999999887542 2455555543211111 11122567899999982 12444443
Q ss_pred E--eCCCcEEEEECCCCC----C--CCCceE-Eec-cCCCCEEEEEEecCCCCEEEEEEC-------------CCeEEEE
Q 009380 254 G--SKLGNITFWNLDSQQ----D--EDNGIY-LFR-THLGPISGIVTQQYCLSKIFTSCY-------------DGLIRLM 310 (536)
Q Consensus 254 g--~~dg~v~iwd~~~~~----~--~~~~~~-~~~-~h~~~V~~l~~~~~~~~~l~s~s~-------------dg~I~vw 310 (536)
- ..++.|.-|.+.... . ..+.+. .+. .....-..|.|.|++ .++++.+. -|.|.-.
T Consensus 101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi 179 (347)
T 3das_A 101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRM 179 (347)
T ss_dssp EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEE
Confidence 2 234556666665421 0 011111 121 111234579999998 77666542 3555555
Q ss_pred ECCCC---------eEEEeecCCCceeEEEecCCCCCEEEEEE-CCCeEEEEECCCCc------------------ccee
Q 009380 311 DAEKE---------VFDLVYSSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSRK------------------SATE 362 (536)
Q Consensus 311 d~~~~---------~~~~~~~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~~------------------~~~~ 362 (536)
+.... ..+..+++ .....++|+|++ .++++-. .++.=.|.-+..+. ++..
T Consensus 180 ~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G-~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~ 257 (347)
T 3das_A 180 TPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQ-RLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ 257 (347)
T ss_dssp CTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTC-CEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred eCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCC-CEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence 65432 11222233 456789999976 4444321 22212222222221 1233
Q ss_pred EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEEe
Q 009380 363 WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTS 433 (536)
Q Consensus 363 ~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s 433 (536)
+..+......|+|.. + .+++..-..+.|....+....... ....+. +....+..|...|+|.++++..
T Consensus 258 ~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~~~-~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 258 WSTDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTAAAA-DPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp ECTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTEESS-CCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCceec-ceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 332224567788874 4 566665556667666665432100 111222 3346789999999997666544
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.25 E-value=0.71 Score=44.40 Aligned_cols=140 Identities=7% Similarity=-0.052 Sum_probs=65.3
Q ss_pred CeEEEEECCCCeEEEeecCC--Cce-eEEEecCCCCCEEEEEEC------CCeEEEEEC--CCCcc--ceeEeccCCCe-
Q 009380 305 GLIRLMDAEKEVFDLVYSSE--YAV-FSLSQQPNNVNTLYFGEG------QGGLNIWDV--RSRKS--ATEWLLHEARI- 370 (536)
Q Consensus 305 g~I~vwd~~~~~~~~~~~~~--~~i-~~l~~~~~~~~~l~~g~~------dg~i~i~d~--~~~~~--~~~~~~h~~~i- 370 (536)
..+.+||+.+.....+.... ... .+++.. ++ .+++.|+. ...+.+||+ .+.+- +..+.......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GD-KTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TT-EEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CC-EEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence 57899999988766554322 111 233333 33 56666653 245777887 43321 11111111111
Q ss_pred EEEEEecCCCCEEEEEeCC----------------------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCe
Q 009380 371 NTIDFNPRNPNIMATSSTD----------------------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSS 428 (536)
Q Consensus 371 ~~i~~~p~~~~~l~s~s~d----------------------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~ 428 (536)
.++... ++ .+++.|+.+ ..+.+||+.+.+- ..+-..........+ ...++++
T Consensus 246 ~~~~~~-~~-~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~--~~~~~~i 319 (357)
T 2uvk_A 246 GFAGIS-ND-SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW--DKSGELSQGRAYGVS--LPWNNSL 319 (357)
T ss_dssp CEEEEE-TT-EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---C--EEEEECSSCCBSSEE--EEETTEE
T ss_pred ceEEEE-CC-EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCce--eeCCCCCCCccccee--EEeCCEE
Confidence 122333 23 577777632 2577899887431 111111111111122 2336778
Q ss_pred EEEEeCCC------cEEEEeCCCCCcceEE
Q 009380 429 LATTSFDD------TIGIWSGVNFENTSMI 452 (536)
Q Consensus 429 l~t~s~dg------~I~iwd~~~~~~~~~~ 452 (536)
++.|+.++ .|.++++++.+.....
T Consensus 320 ~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 320 LIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred EEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 88888653 3556677766554443
No 344
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.99 E-value=2.7 Score=40.39 Aligned_cols=145 Identities=8% Similarity=0.037 Sum_probs=79.2
Q ss_pred CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-------ecCCCceeEEEecCC---CCCEEEEEE-C------
Q 009380 283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-------YSSEYAVFSLSQQPN---NVNTLYFGE-G------ 345 (536)
Q Consensus 283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-------~~~~~~i~~l~~~~~---~~~~l~~g~-~------ 345 (536)
.....|+|.|++ ..|+.+...|.|++++........+ .........|+++|+ + ..|++.. .
T Consensus 18 ~~P~~i~~~pdG-~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDN-HGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQS-RRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTT-CCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHH-CEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCC-CEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCC-CEEEEEEeCCCCCCC
Confidence 456799999998 6355666789999998643211111 112346789999996 4 3555543 2
Q ss_pred -CCeEEEEECCCCc--c--ceeE-ec------cCCCeEEEEEecCCCCEEEEEeC-------------CCcEEEEeCCCC
Q 009380 346 -QGGLNIWDVRSRK--S--ATEW-LL------HEARINTIDFNPRNPNIMATSST-------------DGTACIWDLRSM 400 (536)
Q Consensus 346 -dg~i~i~d~~~~~--~--~~~~-~~------h~~~i~~i~~~p~~~~~l~s~s~-------------dg~i~iwdl~~~ 400 (536)
...|..|++.... . ...+ .. .......|.|.|+| .++++.+. .|.|.-+|....
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 2357777765331 1 1111 11 11224679999988 45554432 245666665431
Q ss_pred CCC-C--------CCcceeecccCceeEEEEcc-CCCeEEE
Q 009380 401 ATD-K--------PEPMKVLSHKRAVHSAYFSP-SGSSLAT 431 (536)
Q Consensus 401 ~~~-~--------~~~~~~~~~~~~v~~l~~sp-~g~~l~t 431 (536)
-.. . ...+...++ .....++|+| +|.++++
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence 000 0 011111234 3467899999 6655444
No 345
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=94.73 E-value=3.4 Score=40.27 Aligned_cols=160 Identities=13% Similarity=0.116 Sum_probs=82.7
Q ss_pred CCceEEEEEEecCCccEEEEEeCCC--cEEEEECCCCCCCCCceEE---ecc--------CCCCEEEEEEecCC-CCEEE
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLG--NITFWNLDSQQDEDNGIYL---FRT--------HLGPISGIVTQQYC-LSKIF 299 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg--~v~iwd~~~~~~~~~~~~~---~~~--------h~~~V~~l~~~~~~-~~~l~ 299 (536)
...|.+|++.|...+.+++ ++..| .-.||...+.......+.. +.. +...|.+|++.|.+ +..|+
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 4579999999853444444 44444 1134433332111111110 111 12357889998742 36777
Q ss_pred EEECCCeEEEEECCCCeEEEeec-------------------CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccc
Q 009380 300 TSCYDGLIRLMDAEKEVFDLVYS-------------------SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA 360 (536)
Q Consensus 300 s~s~dg~I~vwd~~~~~~~~~~~-------------------~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~ 360 (536)
.+...+.|...+-.......+.. ....+.+|.+.|.+++.|+++..++.|...+- .++.-
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW 211 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDW 211 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSC
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCc
Confidence 77767766555433333333221 12357889998855456777766665554432 22222
Q ss_pred eeEec-----c--------CCCeEEEEEecCCCCEEEEEeCCCcEEEEe
Q 009380 361 TEWLL-----H--------EARINTIDFNPRNPNIMATSSTDGTACIWD 396 (536)
Q Consensus 361 ~~~~~-----h--------~~~i~~i~~~p~~~~~l~s~s~dg~i~iwd 396 (536)
..+.. + ...+.+|.++|.++..|..+...+ |...+
T Consensus 212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 22110 0 124889999997556777776544 54443
No 346
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.42 E-value=2.2 Score=42.70 Aligned_cols=110 Identities=12% Similarity=0.145 Sum_probs=64.0
Q ss_pred eEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec---------CCCceeEEEecCC---CCCEEEE
Q 009380 275 IYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS---------SEYAVFSLSQQPN---NVNTLYF 342 (536)
Q Consensus 275 ~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~---------~~~~i~~l~~~~~---~~~~l~~ 342 (536)
+..+...-...+.|+|.|++ .++++-...+.|++++..++....+.. ....+..|+|+|+ + ..|++
T Consensus 19 ~~~~a~~l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~-g~lYv 96 (454)
T 1cru_A 19 KKVILSNLNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN-PYIYI 96 (454)
T ss_dssp EEEEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTS-CEEEE
T ss_pred EEEEECCCCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcC-CEEEE
Confidence 33333334457799999998 766654444579888876554433221 2456779999995 4 45555
Q ss_pred EEC-------------CCeEEEEECCCCc-------cce-eEe-ccCCCeEEEEEecCCCCEEEEEe
Q 009380 343 GEG-------------QGGLNIWDVRSRK-------SAT-EWL-LHEARINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 343 g~~-------------dg~i~i~d~~~~~-------~~~-~~~-~h~~~i~~i~~~p~~~~~l~s~s 387 (536)
... ...|..|++.... .+. .+. ........|.|.|+| +++++.+
T Consensus 97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G 162 (454)
T 1cru_A 97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG 162 (454)
T ss_dssp EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred EEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence 542 2356666654321 111 121 122357899999998 4555443
No 347
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=94.24 E-value=7 Score=41.81 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=66.2
Q ss_pred CEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC-------CCceeEEEecCCCCCEEEEEECCC-------eE
Q 009380 284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS-------EYAVFSLSQQPNNVNTLYFGEGQG-------GL 349 (536)
Q Consensus 284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~-------~~~i~~l~~~~~~~~~l~~g~~dg-------~i 349 (536)
.|..|+++|..+..++.+...+.|..++-.......+... ...|.+|+++|.+++.++++.... ..
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~ 103 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMG 103 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCc
Confidence 7999999998767888888777776666555555554432 245899999997667777765321 24
Q ss_pred EEEECCC-CccceeEe-ccC--------CCeEEEEEecCCCCEEEEEeCC
Q 009380 350 NIWDVRS-RKSATEWL-LHE--------ARINTIDFNPRNPNIMATSSTD 389 (536)
Q Consensus 350 ~i~d~~~-~~~~~~~~-~h~--------~~i~~i~~~p~~~~~l~s~s~d 389 (536)
.||-... ++.-..+. ... ..+..|+++|.++..++.+...
T Consensus 104 ~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 104 AILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp EEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred cEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 4554333 33222221 110 1246799999877777777633
No 348
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.23 E-value=4 Score=39.03 Aligned_cols=201 Identities=11% Similarity=0.066 Sum_probs=105.3
Q ss_pred ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEe----ccCCCCEEEEEEecC---CCCEEEEE-E--CCC
Q 009380 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLF----RTHLGPISGIVTQQY---CLSKIFTS-C--YDG 305 (536)
Q Consensus 236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~----~~h~~~V~~l~~~~~---~~~~l~s~-s--~dg 305 (536)
.-..|+|.| +|.++++--..|.|++++..... ...+..+ .........|+|+|+ + ..|+.+ + .++
T Consensus 33 ~P~~ia~~p--dG~llVter~~G~I~~v~~~~g~--~~~v~~~~~v~~~g~~GllGia~~Pdf~~~-g~lYv~yt~~~~~ 107 (347)
T 3das_A 33 SPWGLAPLP--GGDLLVSSRDEATITRVDAKTGR--KTELGEVPGVSPSGEGGLLGIALSPDYASD-HMVYAYFTSASDN 107 (347)
T ss_dssp SEEEEEECT--TSCEEEEETTTCEEEEECTTTCC--EEEEEECTTCCCBTTBSEEEEEECTTHHHH-CEEEEEEECSSSE
T ss_pred CceEEEEcC--CCcEEEEEecCCEEEEEECCCCc--EeeecccCceeecCCCCceeeEeccccccC-CEEEEEEecCCCC
Confidence 467999999 99887777668999998765321 1112212 123456889999995 3 455443 2 455
Q ss_pred eEEEEECCCC--------eEEEee-----cCCCceeEEEecCCCCCEEEEEEC-------------CCeEEEEECCCC--
Q 009380 306 LIRLMDAEKE--------VFDLVY-----SSEYAVFSLSQQPNNVNTLYFGEG-------------QGGLNIWDVRSR-- 357 (536)
Q Consensus 306 ~I~vwd~~~~--------~~~~~~-----~~~~~i~~l~~~~~~~~~l~~g~~-------------dg~i~i~d~~~~-- 357 (536)
.|.-|.+..+ ....++ ........|.|.|++ .++++.+. .|.|.-++....
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 6666766541 111111 112345679999998 55554332 356666665422
Q ss_pred --c---cceeEe-ccCCCeEEEEEecCCCCEEEEE-eCCCcEEEEeCCCCCCC-------------CCCcceeeccc-Cc
Q 009380 358 --K---SATEWL-LHEARINTIDFNPRNPNIMATS-STDGTACIWDLRSMATD-------------KPEPMKVLSHK-RA 416 (536)
Q Consensus 358 --~---~~~~~~-~h~~~i~~i~~~p~~~~~l~s~-s~dg~i~iwdl~~~~~~-------------~~~~~~~~~~~-~~ 416 (536)
. ....+. +|. ....++|+|++ .++++= +.|+.-.|--+..+..- ...+.....+. ..
T Consensus 187 ~~nPf~~~~i~a~G~R-Np~Gla~dp~G-~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a 264 (347)
T 3das_A 187 PGNPFPGSPVYSYGHR-NVQGLAWDDKQ-RLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS 264 (347)
T ss_dssp TTCSSTTCCEEEBCCS-BCCEEEECTTC-CEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred CCCCCCCCeEEeeCCC-CcceEEECCCC-CEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence 0 111222 343 35679999976 444432 23332233333332210 01122222222 35
Q ss_pred eeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380 417 VHSAYFSPSGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 417 v~~l~~sp~g~~l~t~s~dg~I~iwd~~~ 445 (536)
...++|. +|..++..-..+.|....+..
T Consensus 265 p~G~~~~-~g~~~~~~l~~~~l~~v~~~~ 292 (347)
T 3das_A 265 PSGIAYA-EGSVWMAGLRGERLWRIPLKG 292 (347)
T ss_dssp EEEEEEE-TTEEEEEESTTCSEEEEEEET
T ss_pred CcceEEE-cCceeeccccCCEEEEEEecC
Confidence 6677776 455555544555666665544
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.20 E-value=0.95 Score=48.19 Aligned_cols=194 Identities=11% Similarity=0.134 Sum_probs=100.5
Q ss_pred CEEEEEECC----CeEEEEECCCCeEEEee-c-------CCCceeEEEecC-CCCCEEEEEECC------CeEEEEECCC
Q 009380 296 SKIFTSCYD----GLIRLMDAEKEVFDLVY-S-------SEYAVFSLSQQP-NNVNTLYFGEGQ------GGLNIWDVRS 356 (536)
Q Consensus 296 ~~l~s~s~d----g~I~vwd~~~~~~~~~~-~-------~~~~i~~l~~~~-~~~~~l~~g~~d------g~i~i~d~~~ 356 (536)
.+++.|+.+ ..+.+||..+.....+. . ....-.+++..+ ++ .+++.|+.+ ..+.+||+.+
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~-~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN-QLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTT-EEEEECCBSSTTCBCCCCEEEETTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCC-EEEEEcCCCCCCCccccEEEEeCCC
Confidence 677777753 46889999888766554 2 111122333333 44 577777654 3588899887
Q ss_pred Cccce--eEeccCCCeEEEEEecCCCCEEEEEeCCC--cEEEEeCCCCCCCCCCcc-eeecccCceeEEEEccC-CCeEE
Q 009380 357 RKSAT--EWLLHEARINTIDFNPRNPNIMATSSTDG--TACIWDLRSMATDKPEPM-KVLSHKRAVHSAYFSPS-GSSLA 430 (536)
Q Consensus 357 ~~~~~--~~~~h~~~i~~i~~~p~~~~~l~s~s~dg--~i~iwdl~~~~~~~~~~~-~~~~~~~~v~~l~~sp~-g~~l~ 430 (536)
.+-.. .+...... .+++...++ .+++.|+.++ .+.+||+.+..-...... ..........++.+..+ +.+++
T Consensus 478 ~~W~~~~~~p~~R~~-h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 478 REWSMIKSLSHTRFR-HSACSLPDG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TEEEECCCCSBCCBS-CEEEECTTS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CcEEECCCCCCCccc-ceEEEEcCC-EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 54221 11111111 223332234 6888887654 689999887431100000 01111222233555654 66777
Q ss_pred EEeC--C-----CcEEEEeCCCCCc-----ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC--------CcEEEEcC
Q 009380 431 TTSF--D-----DTIGIWSGVNFEN-----TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT--------RTVEVISP 490 (536)
Q Consensus 431 t~s~--d-----g~I~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d--------g~I~v~d~ 490 (536)
.|+. + +.+.+||+.+..- -..+.......+.-.. ++...++.+++.|+.+ ..|.+||.
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 633 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ--IKYITPRKLLIVGGTSPSGLFDRTNSIISLDP 633 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE--EEEEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce--EEEeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence 7765 2 3588999877652 1112111111111111 2222236777777743 45999999
Q ss_pred Cccc
Q 009380 491 AQRR 494 (536)
Q Consensus 491 ~~~~ 494 (536)
.+.+
T Consensus 634 ~t~~ 637 (695)
T 2zwa_A 634 LSET 637 (695)
T ss_dssp TTTE
T ss_pred CCCe
Confidence 8764
No 350
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=93.24 E-value=11 Score=40.69 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=84.2
Q ss_pred CCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC-------CCceeEEEecCCCCCEEEEEECCCe----EE
Q 009380 282 LGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS-------EYAVFSLSQQPNNVNTLYFGEGQGG----LN 350 (536)
Q Consensus 282 ~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~-------~~~i~~l~~~~~~~~~l~~g~~dg~----i~ 350 (536)
.+.|.+|.++|..+..++.+...+.|...+=.......+... ...+.+|++.|.+++.++++..... -.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 468999999998778888888878776665444445444332 2469999999876567777664311 23
Q ss_pred EEECC-CCccceeEec---------cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC-CCCCCCCccee---ecccCc
Q 009380 351 IWDVR-SRKSATEWLL---------HEARINTIDFNPRNPNIMATSSTDGTACIWDLRS-MATDKPEPMKV---LSHKRA 416 (536)
Q Consensus 351 i~d~~-~~~~~~~~~~---------h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~-~~~~~~~~~~~---~~~~~~ 416 (536)
||-.. .++.-..+.. ....+..|+++|.++..+..+...+.| |--.. ++. -...... ......
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~T-W~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKT-WTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSS-CEEETTSCCCCSTTTC
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcc-cCCCccCccccCCCCC
Confidence 33322 3332111111 011356788888665677777644443 32222 210 0000000 011245
Q ss_pred eeEEEEcc-CCCeEEEEeCC
Q 009380 417 VHSAYFSP-SGSSLATTSFD 435 (536)
Q Consensus 417 v~~l~~sp-~g~~l~t~s~d 435 (536)
+..+.++| ++..++++..+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEEECTTSTTCEEEEESS
T ss_pred eEEEEECCCCCCEEEEEEcC
Confidence 78899998 44566666654
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.36 E-value=1.6 Score=46.39 Aligned_cols=149 Identities=11% Similarity=0.131 Sum_probs=79.9
Q ss_pred CccEEEEEeCC------CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC--eEEEEECCCCeEE
Q 009380 247 DVRMVVAGSKL------GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG--LIRLMDAEKEVFD 318 (536)
Q Consensus 247 ~~~~l~tg~~d------g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg--~I~vwd~~~~~~~ 318 (536)
++.+++.|+.+ ..+.+||..+.. ...+..+...... .+++...++ .+++.|+.++ .+.+||+.+....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~--W~~~~~~p~~R~~-h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~~W~ 526 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTRE--WSMIKSLSHTRFR-HSACSLPDG-NVLILGGVTEGPAMLLYNVTEEIFK 526 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTE--EEECCCCSBCCBS-CEEEECTTS-CEEEECCBCSSCSEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCc--EEECCCCCCCccc-ceEEEEcCC-EEEEECCCCCCCCEEEEECCCCceE
Confidence 45677777654 357788887532 1111111111111 122232355 7888887655 6999999998776
Q ss_pred Eeec------CCCceeEEEecCCCCCEEEEEEC--C-----CeEEEEECCCCcc-----ceeEec---cCCCeEEEEEec
Q 009380 319 LVYS------SEYAVFSLSQQPNNVNTLYFGEG--Q-----GGLNIWDVRSRKS-----ATEWLL---HEARINTIDFNP 377 (536)
Q Consensus 319 ~~~~------~~~~i~~l~~~~~~~~~l~~g~~--d-----g~i~i~d~~~~~~-----~~~~~~---h~~~i~~i~~~p 377 (536)
.+.. ......++.+......+++.|+. + ..+.+||+.+... -..+.. ....-.+++...
T Consensus 527 ~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~ 606 (695)
T 2zwa_A 527 DVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT 606 (695)
T ss_dssp ECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE
T ss_pred EccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC
Confidence 5542 11222335555542357777765 2 4689999988762 111111 111112233333
Q ss_pred CCCCEEEEEeC--------CCcEEEEeCCCC
Q 009380 378 RNPNIMATSST--------DGTACIWDLRSM 400 (536)
Q Consensus 378 ~~~~~l~s~s~--------dg~i~iwdl~~~ 400 (536)
++ .+++.|+. ...|.+||+.+.
T Consensus 607 ~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 607 PR-KLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp TT-EEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred CC-EEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 23 67777774 345889998874
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.91 E-value=12 Score=34.50 Aligned_cols=185 Identities=12% Similarity=0.114 Sum_probs=103.1
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~ 313 (536)
...|..|+... .. .++. . ||.|..|-.......+.+ ..-...|..|+.... ..+.-. ||.|..|-..
T Consensus 62 ~~~i~~ia~G~--~h-s~~l-~-~G~v~~wG~n~~Gqlg~P----~~~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n 128 (282)
T 3qhy_B 62 QSGVDAIAAGN--YH-SLAL-K-DGEVIAWGGNEDGQTTVP----AEARSGVDAIAAGAW---ASYALK-DGKVIAWGDD 128 (282)
T ss_dssp GSCCCEEEECS--SE-EEEE-E-TTEEEEEECCTTSTTCCC----GGGSSSEEEEEEETT---EEEEEE-TTEEEEEECC
T ss_pred CCCEEEEEeCC--CE-EEEE-E-CCEEEEeeCCCCCCCCCC----cccCCCeEEEECcCC---EEEEEe-CCeEEEecCC
Confidence 34677777754 32 3333 4 899999987653211111 111346888877654 344445 9999999865
Q ss_pred C-CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380 314 K-EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTA 392 (536)
Q Consensus 314 ~-~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i 392 (536)
. +++-........|..++..... .++ -. ||.|+.|-......+..-......|..|+.-.. +.++. .||.|
T Consensus 129 ~~gqlg~~~~~~~~i~~i~~G~~~--~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--hs~al--~~G~v 200 (282)
T 3qhy_B 129 SDGQTTVPAEAQSGVTALDGGVYT--ALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLAL--KDGKV 200 (282)
T ss_dssp TTSTTSCCGGGGSSEEEEEECSSE--EEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE--ETTEE
T ss_pred CCCcCCCCccCCCCeEEEEcccCE--EEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC--EEEEE--ECCeE
Confidence 4 2221112233567777765432 333 34 799999976653332211122456777877642 34444 59999
Q ss_pred EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 009380 393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF 446 (536)
Q Consensus 393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~ 446 (536)
+.|=........ .+. .....|..|+...... ++. . ||.|..|=....
T Consensus 201 ~~wG~n~~gqlg-~p~---~~~~~v~~i~~G~~h~-~al-~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 201 IAWGDNRYKQTT-VPT---EALSGVSAIASGEWYS-LAL-K-NGKVIAWGSSRT 247 (282)
T ss_dssp EEEECCTTSTTC-CCG---GGGSSCCEEEECSSCE-EEE-E-TTEEEEESTTCC
T ss_pred EEEECCCCCCCC-CCc---ccCCCceEEEcCCCEE-EEE-E-CCEEEEecCCCC
Confidence 999765432111 111 1224577777654332 333 3 999999976543
No 353
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=87.89 E-value=4.4 Score=41.14 Aligned_cols=101 Identities=9% Similarity=0.071 Sum_probs=65.4
Q ss_pred cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCC---------cceEEeccCCCCc
Q 009380 391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFE---------NTSMIHHNNQTGR 460 (536)
Q Consensus 391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~---------~~~~~~~~~~~~~ 460 (536)
.|.+.|.+..............-......+.++|||+++++++ .+.++.++|+.... +...+......+
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G- 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG- 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-
Confidence 4788888762110113444445667778899999999988877 57889999987421 111111111122
Q ss_pred eeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380 461 WISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR 493 (536)
Q Consensus 461 ~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~ 493 (536)
+..+..+|.++|....+-.-|..|.-|++...
T Consensus 378 -lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 378 -LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp -SCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred -CcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 23445779999966666678999999998654
No 354
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=85.21 E-value=28 Score=33.57 Aligned_cols=141 Identities=9% Similarity=0.149 Sum_probs=77.1
Q ss_pred eEEEEECCCC--ccceeEec------cCCCeEEEEEe---cC---CCCEEEEE-eCCCcEEEEeCCCCCCCC-------C
Q 009380 348 GLNIWDVRSR--KSATEWLL------HEARINTIDFN---PR---NPNIMATS-STDGTACIWDLRSMATDK-------P 405 (536)
Q Consensus 348 ~i~i~d~~~~--~~~~~~~~------h~~~i~~i~~~---p~---~~~~l~s~-s~dg~i~iwdl~~~~~~~-------~ 405 (536)
.|.+||+.+. +.++++.. ....+..+.+. |. +..++..+ +..+.|.|+|+.+++.-. +
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 6777888887 77666552 13457788877 22 12343333 346789999999864210 0
Q ss_pred Cc---ceeecc----cCceeEEEEccC----CCeEEEEeCCCcEEEEeCC-----CC---CcceEEeccCCCCceeeeeE
Q 009380 406 EP---MKVLSH----KRAVHSAYFSPS----GSSLATTSFDDTIGIWSGV-----NF---ENTSMIHHNNQTGRWISSFR 466 (536)
Q Consensus 406 ~~---~~~~~~----~~~v~~l~~sp~----g~~l~t~s~dg~I~iwd~~-----~~---~~~~~~~~~~~~~~~~~~~~ 466 (536)
.. ....+. ...|..|+++|+ ++.|+-....+ -++|.+. +. ..+..+........ ...
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~---~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYND---AIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCC---EEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCC---cce
Confidence 00 000111 247889999997 67777666554 2333322 22 12222222111111 111
Q ss_pred EEEc-CCCCEEEEEcCCCcEEEEcCCc
Q 009380 467 AIWG-WDDSCVFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 467 ~~~s-~~g~~l~~gs~dg~I~v~d~~~ 492 (536)
.+.+ .+|.++++--..+.|..|+..+
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 3454 5676677767778899999875
No 355
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=82.08 E-value=59 Score=34.89 Aligned_cols=149 Identities=15% Similarity=0.191 Sum_probs=79.1
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEecc-------CCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT-------HLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~-------h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
.+.|.+|+++|. +...+.+++..+.|...+ +. +..-..+.. ....|.+|++.|..++.++.+..+..
T Consensus 14 ~g~i~~i~~~p~-~~~~~~a~~~~ggv~rS~--Dg---G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~ 87 (789)
T 1sqj_A 14 GGYITGIVAHPK-TKDLLYARTDIGGAYRWD--AG---TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYV 87 (789)
T ss_dssp CSCEEEEEECSS-STTCEEEEESSSCEEEEE--TT---TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCT
T ss_pred CCcEEEEEECCC-CCCEEEEEecCCCEEEec--CC---CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccC
Confidence 468999999995 335566666667655443 21 221112221 12469999999865456666553311
Q ss_pred ----EEEE-ECCCCe-EEEeec---C------CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe------c
Q 009380 307 ----IRLM-DAEKEV-FDLVYS---S------EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL------L 365 (536)
Q Consensus 307 ----I~vw-d~~~~~-~~~~~~---~------~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~------~ 365 (536)
-.|| ..+.++ ...+.. . ...+..++++|.+++.++++...+.|.. ....++.-..+. .
T Consensus 88 ~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~ 166 (789)
T 1sqj_A 88 GDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFT 166 (789)
T ss_dssp TSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCS
T ss_pred CCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccC
Confidence 2233 333332 222211 0 1135678888876677888775544332 222233222221 1
Q ss_pred cCCCeEEEEEecCCCCEEEEEeCC
Q 009380 366 HEARINTIDFNPRNPNIMATSSTD 389 (536)
Q Consensus 366 h~~~i~~i~~~p~~~~~l~s~s~d 389 (536)
....+..|.++|.++..++.+..+
T Consensus 167 ~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 167 NGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TTTCEEEEEECTTSTTCEEEEESS
T ss_pred CCCCeEEEEECCCCCCEEEEEEcC
Confidence 124578899998665556556544
No 356
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=76.98 E-value=80 Score=33.47 Aligned_cols=106 Identities=13% Similarity=0.205 Sum_probs=58.6
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC-------CCCEEEEEEecCCCCEEEEEECCC--
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH-------LGPISGIVTQQYCLSKIFTSCYDG-- 305 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h-------~~~V~~l~~~~~~~~~l~s~s~dg-- 305 (536)
+.|..|+++|. +...|.++...|.|..++-. +..-..+..+ ...|.+|+++|..++.++.+....
T Consensus 23 g~i~~i~~~p~-~~~~~~~~~~~ggv~rS~D~-----G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~ 96 (737)
T 2cn3_A 23 GFMPGIVFNET-EKDLIYARAAIGGAYRWDPS-----TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTN 96 (737)
T ss_dssp SCCCEEEECSS-STTCEEEECSSSCEEEEETT-----TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSS
T ss_pred ceeeEEEECCC-CCCEEEEEecCCcEEEeCCC-----CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEeccccc
Confidence 48999999995 23455566656665554322 2221222111 246999999996656666654321
Q ss_pred -----eEEEEEC-CCCe-EEEee-cC--------CCceeEEEecCCCCCEEEEEECC
Q 009380 306 -----LIRLMDA-EKEV-FDLVY-SS--------EYAVFSLSQQPNNVNTLYFGEGQ 346 (536)
Q Consensus 306 -----~I~vwd~-~~~~-~~~~~-~~--------~~~i~~l~~~~~~~~~l~~g~~d 346 (536)
...||-. +.++ ...+. .. ...+..|+++|.+++.++++...
T Consensus 97 ~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 97 DWLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp SSSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred ccccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 2344443 3332 22211 11 01246799999877888888744
No 357
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=76.86 E-value=45 Score=30.50 Aligned_cols=226 Identities=12% Similarity=0.096 Sum_probs=118.7
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK 314 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~ 314 (536)
..|..|+... . ..++. . ||.|..|-.......+.+ ......|..|+..... .++. . ||.|..|-...
T Consensus 24 ~~i~~ia~G~--~-h~~~l-~-~G~v~~wG~n~~Gqlg~p----~~~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 24 SGVDAIAGGY--F-HGLAL-K-GGKVLGWGANLNGQLTMP----AATQSGVDAIAAGNYH--SLAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp SSCCEEEECS--S-EEEEE-E-TTEEEEEECCSSSTTSCC----GGGGSCCCEEEECSSE--EEEE-E-TTEEEEEECCT
T ss_pred CCCcEEEeCC--C-eEEEE-E-CCEEEEEeCCCCCCCCCC----ccCCCCEEEEEeCCCE--EEEE-E-CCEEEEeeCCC
Confidence 4677777654 2 22333 5 899999987653211111 1122357777776542 3333 5 99999998654
Q ss_pred -CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 009380 315 -EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTAC 393 (536)
Q Consensus 315 -~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~ 393 (536)
+++-........|..++.... ..++-+ +|.|+.|-......+..-......|..|+.... +.++ -. ||.|+
T Consensus 91 ~Gqlg~P~~~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~-l~-~G~v~ 162 (282)
T 3qhy_B 91 DGQTTVPAEARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALA-VK-NGGVI 162 (282)
T ss_dssp TSTTCCCGGGSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEE-EE-TTEEE
T ss_pred CCCCCCCcccCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEE-EE-CCEEE
Confidence 222111122346777777654 344445 999999976653322222223456777776542 2333 34 79999
Q ss_pred EEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCC
Q 009380 394 IWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDD 473 (536)
Q Consensus 394 iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 473 (536)
.|-........ .+. .....|..|+...+. .++. .||.|..|=......+... . .....+.. +.-. ..
T Consensus 163 ~wG~n~~gqlg-~p~---~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p-~--~~~~~v~~--i~~G-~~ 229 (282)
T 3qhy_B 163 AWGDNYFGQTT-VPA---EAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVP-T--EALSGVSA--IASG-EW 229 (282)
T ss_dssp EEECCTTSTTS-CCG---GGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCC-G--GGGSSCCE--EEEC-SS
T ss_pred EecCCCCCCCC-Cce---ecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCC-c--ccCCCceE--EEcC-CC
Confidence 99766532111 111 123567777765433 2333 5999999976543322211 0 01111222 2112 22
Q ss_pred CEEEEEcCCCcEEEEcCCccccc
Q 009380 474 SCVFIGNMTRTVEVISPAQRRSV 496 (536)
Q Consensus 474 ~~l~~gs~dg~I~v~d~~~~~~~ 496 (536)
..++.. ||.|..|=.....++
T Consensus 230 h~~al~--~g~v~~wG~n~~gq~ 250 (282)
T 3qhy_B 230 YSLALK--NGKVIAWGSSRTAPS 250 (282)
T ss_dssp CEEEEE--TTEEEEESTTCCCCG
T ss_pred EEEEEE--CCEEEEecCCCCccc
Confidence 234433 899999966554443
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=76.49 E-value=56 Score=31.44 Aligned_cols=167 Identities=12% Similarity=0.103 Sum_probs=91.6
Q ss_pred eEEEEECCCC--eEEEeec-------CCCceeEEEec---CC---CCCEEEEEE-CCCeEEEEECCCCccceeEe-----
Q 009380 306 LIRLMDAEKE--VFDLVYS-------SEYAVFSLSQQ---PN---NVNTLYFGE-GQGGLNIWDVRSRKSATEWL----- 364 (536)
Q Consensus 306 ~I~vwd~~~~--~~~~~~~-------~~~~i~~l~~~---~~---~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~----- 364 (536)
.|.+||+.+. +....+. ....+..+.+. +. +..+++... ..+.|.++|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 3556666665 5443332 23456777776 22 124556555 46789999999876533321
Q ss_pred ---------c----cCCCeEEEEEecC----CCCEEEEEeCCCcEEEEeCC-----CCCCCCCCcceeecccC---ceeE
Q 009380 365 ---------L----HEARINTIDFNPR----NPNIMATSSTDGTACIWDLR-----SMATDKPEPMKVLSHKR---AVHS 419 (536)
Q Consensus 365 ---------~----h~~~i~~i~~~p~----~~~~l~s~s~dg~i~iwdl~-----~~~~~~~~~~~~~~~~~---~v~~ 419 (536)
+ -...|..|+++|+ + ..|.-....+. ++|.+. ... ....+...+..+ .-..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~-~~LYf~plss~-~ly~V~T~~L~~~~--~~~~v~~~G~kg~~s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGN-RPAYYLAGSAI-KVYSVNTKELKQKG--GKLNPELLGNRGKYNDAIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSC-CEEEEEESSCS-EEEEEEHHHHSSTT--CCCCCEEEEECCTTCCEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCC-eEEEEEECCCC-cEEEEEHHHhhCcc--hhhceEEeeecCCCCCcce
Confidence 0 0246889999987 4 45555554442 344332 221 112233344433 3345
Q ss_pred EEEc-cCCCeEEEEeCCCcEEEEeCCC-C---CcceEEeccCCCCceeeeeEEEEcCCCCEEEEE
Q 009380 420 AYFS-PSGSSLATTSFDDTIGIWSGVN-F---ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG 479 (536)
Q Consensus 420 l~~s-p~g~~l~t~s~dg~I~iwd~~~-~---~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g 479 (536)
++++ .+|.++++--..+.|..|+..+ . .....+.+.. .-.|...+ ....+|.+.+..
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~--~i~~~g~Lwv~s 341 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDI--SVDSKGGLWFMS 341 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEE--EECTTSCEEEEE
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeE--EECCCCeEEEEE
Confidence 6675 5787777777888999999865 1 2334444444 44455543 344555444443
No 359
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=73.04 E-value=77 Score=31.42 Aligned_cols=234 Identities=8% Similarity=-0.063 Sum_probs=110.9
Q ss_pred cceeeeecCCCCc--ccccccccccccccccccceEEecccccC--ccc-------cccc----cCCceEEEEEEecCC-
Q 009380 184 NGFKTCKDEGLGV--GSCDLIKGVVKTEKIEVGSCVDIGSLTLK--PEN-------IARI----MPGRITQMKFLPCSD- 247 (536)
Q Consensus 184 ~~v~~~~~s~~~~--~l~~~~~~~~~~~~~~~dg~v~lw~~~~~--~~~-------~~~~----~~~~I~~v~~~p~~~- 247 (536)
+.-..+.|.|+|. +++.. ..|.|++++.... ... +... -.+....|+|+| +
T Consensus 14 ~~P~~~a~~pdG~~rl~V~e-----------r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P--~f 80 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILE-----------KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHP--NY 80 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEE-----------TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECT--TH
T ss_pred CCceEEEECCCCCeEEEEEe-----------CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCC--CC
Confidence 4456788889985 66644 3355666543211 011 1111 145788999999 5
Q ss_pred ---ccEEEEEeCC------------CcEEEEECCCCCC------CCCceEEec--cCCCCEEEEEEecCCCCEEEEEECC
Q 009380 248 ---VRMVVAGSKL------------GNITFWNLDSQQD------EDNGIYLFR--THLGPISGIVTQQYCLSKIFTSCYD 304 (536)
Q Consensus 248 ---~~~l~tg~~d------------g~v~iwd~~~~~~------~~~~~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~d 304 (536)
+.+.++-+.+ ..|.-|.+..... ....+..+. ........|.|.||+ .+.++.+..
T Consensus 81 ~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~Gd~ 159 (463)
T 2wg3_C 81 KKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIILGDG 159 (463)
T ss_dssp HHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEECCT
T ss_pred cCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEeCCC
Confidence 3444443321 1344466653210 112233322 112346899999998 766666543
Q ss_pred C-----------------eEEEEECCCC------e---------------EEEeecCCCceeEEEecCCCC----CE-EE
Q 009380 305 G-----------------LIRLMDAEKE------V---------------FDLVYSSEYAVFSLSQQPNNV----NT-LY 341 (536)
Q Consensus 305 g-----------------~I~vwd~~~~------~---------------~~~~~~~~~~i~~l~~~~~~~----~~-l~ 341 (536)
+ .|.-.|.+.. . .+..+++ .....++|.|... .+ ++
T Consensus 160 ~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~-RNp~gla~dp~tg~~~G~l~~~ 238 (463)
T 2wg3_C 160 MITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGL-HDPGRCAVDRHPTDININLTIL 238 (463)
T ss_dssp TCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECC-SSCCBEEEESSCSSTTCSEEEE
T ss_pred CCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECC-CCcceEEECCCCCCcccceEEE
Confidence 2 2333344331 0 0111222 2456789998732 33 43
Q ss_pred EEECCC----eEEEEECCCC------ccceeEeccC-CCeEEEEEecCC-----CCEEEEEeCCCcEEEEeCCCCCCCCC
Q 009380 342 FGEGQG----GLNIWDVRSR------KSATEWLLHE-ARINTIDFNPRN-----PNIMATSSTDGTACIWDLRSMATDKP 405 (536)
Q Consensus 342 ~g~~dg----~i~i~d~~~~------~~~~~~~~h~-~~i~~i~~~p~~-----~~~l~s~s~dg~i~iwdl~~~~~~~~ 405 (536)
.+...| .-.|..+..+ .++..+..|. ..+..+.|.... ..-++.+...+.|....+.......
T Consensus 239 ~~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~- 317 (463)
T 2wg3_C 239 CSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQW- 317 (463)
T ss_dssp EECC------CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CC-
T ss_pred ecccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCcee-
Confidence 332112 1233333322 2445554332 567788885421 0114445555776666655432111
Q ss_pred Cccee-e--------cccCceeEEEEccCCCeEEEEe
Q 009380 406 EPMKV-L--------SHKRAVHSAYFSPSGSSLATTS 433 (536)
Q Consensus 406 ~~~~~-~--------~~~~~v~~l~~sp~g~~l~t~s 433 (536)
....+ . .....+..+.+.|+|.++++..
T Consensus 318 ~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 318 QEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp EEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred eEEEeecCCcccccccccCcceEEEECCCCCEEEEec
Confidence 11111 0 1235789999999998777765
No 360
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=72.58 E-value=62 Score=30.12 Aligned_cols=194 Identities=11% Similarity=0.076 Sum_probs=112.7
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCC---CCceE--EeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC---C---
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDE---DNGIY--LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK---E--- 315 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~---~~~~~--~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~---~--- 315 (536)
+..++++.+.+|.|+--.+..-... ...+. .+... ..+..+...... +.++..+..|.++-+.... .
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~-~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTH-DYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETT-CEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCC-CEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 5678899999999998876542110 11111 22333 344454444444 7888888899887776532 1
Q ss_pred ---eE---EEeecCCCceeEEEecCC--CCCEEEEEECCCeEEEEECCCC-------ccceeEeccCCCeEEEEEecCCC
Q 009380 316 ---VF---DLVYSSEYAVFSLSQQPN--NVNTLYFGEGQGGLNIWDVRSR-------KSATEWLLHEARINTIDFNPRNP 380 (536)
Q Consensus 316 ---~~---~~~~~~~~~i~~l~~~~~--~~~~l~~g~~dg~i~i~d~~~~-------~~~~~~~~h~~~i~~i~~~p~~~ 380 (536)
.. ...+.....|.++...++ ....++..+.+|.++...+... .....+.. .+.+..+.....+
T Consensus 85 ~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~- 162 (312)
T 1suu_A 85 SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD- 162 (312)
T ss_dssp ---CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT-
T ss_pred CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC-
Confidence 11 011223345555544321 2367888999999999887432 22222333 4566666555433
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCC-----CCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380 381 NIMATSSTDGTACIWDLRSMATD-----KPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 381 ~~l~s~s~dg~i~iwdl~~~~~~-----~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~ 445 (536)
..++..+.+|.+..+........ ....+.+ .....|.++..-.++..+++.+..|..+..++..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L-~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKL-KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCC-CTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEe-CCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 56777888999998877542111 1111112 2345566666555566788889999999888754
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.91 E-value=1.2e+02 Score=33.22 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=31.7
Q ss_pred ceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe
Q 009380 326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL 364 (536)
Q Consensus 326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 364 (536)
.+.+++..++. .++++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTT-TEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCC-cEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46677777766 799999999999999999998877654
No 362
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=68.75 E-value=70 Score=29.15 Aligned_cols=199 Identities=8% Similarity=0.035 Sum_probs=112.2
Q ss_pred CCceEEEEEEecCCccEEEEEeCCCcEEEEEC---CCCCCCCCceEEeccCCCCEEEEEEecC-CCCEEEEEECCCeEEE
Q 009380 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNL---DSQQDEDNGIYLFRTHLGPISGIVTQQY-CLSKIFTSCYDGLIRL 309 (536)
Q Consensus 234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~---~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~s~s~dg~I~v 309 (536)
.+.+..+.... ....|+.-+..|.++--.+ .... ...+ +. ....|..+.. ++ ...+++.++.+|.|+.
T Consensus 23 gD~~~~~~~~~--t~~~ll~fT~~G~v~~~~~~~lp~~~--~~~l--l~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr 94 (276)
T 3no0_A 23 KAPVVNILRVP--FTEGLFLVSNRGRVYWIAGSQALQGS--KVSL--KS-REEKIVGAFI-REKFGNRLLLATKKGYVKK 94 (276)
T ss_dssp CCCEEEEEEEE--TTSCEEEEETTSEEEEECSHHHHTSE--ECCC--SS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEE
T ss_pred CCeEEEEEEEC--CCCEEEEEcCCCeEEEEEhhhCccCc--cccc--CC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEE
Confidence 45666666666 4456666677787765433 2211 1112 32 3556766644 42 2378999999999999
Q ss_pred EECCC------CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC----Cc-----cceeEeccCCCeEEEE
Q 009380 310 MDAEK------EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS----RK-----SATEWLLHEARINTID 374 (536)
Q Consensus 310 wd~~~------~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~----~~-----~~~~~~~h~~~i~~i~ 374 (536)
..+.. +.....+.....+..+...... ..++..+..|.+..+.... +. ....+. ..+.|.++.
T Consensus 95 ~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~-~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~ 172 (276)
T 3no0_A 95 IPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDE-THILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLR 172 (276)
T ss_dssp EEGGGTTTCSTTEECSCCCTTCCEEEEEECCSS-CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEE
T ss_pred EEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCC-CEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEE
Confidence 88654 2222222334556555555444 6788899999998887532 11 111222 235666665
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCCCCCC---CcceeecccCceeEEEEccCCCeEEEEeCCCcEEE--EeCC
Q 009380 375 FNPRNPNIMATSSTDGTACIWDLRSMATDKP---EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI--WSGV 444 (536)
Q Consensus 375 ~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~---~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~i--wd~~ 444 (536)
..+++ ..++..+..|.++...+........ -...+ .....+..+........++..+.+|.+.. ++..
T Consensus 173 ~~~~~-~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 173 IWNGE-PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EESSC-SEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EeCCC-CEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 55544 5788888899999988755321111 11111 22334444433333345666677777766 6653
No 363
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=67.19 E-value=1.3e+02 Score=31.71 Aligned_cols=195 Identities=10% Similarity=0.010 Sum_probs=0.0
Q ss_pred EecCCCCCEEEEEECCC----eEEEEECCCCccceeEeccCCCe--------EEEEEecCCCCEEEEE----------eC
Q 009380 331 SQQPNNVNTLYFGEGQG----GLNIWDVRSRKSATEWLLHEARI--------NTIDFNPRNPNIMATS----------ST 388 (536)
Q Consensus 331 ~~~~~~~~~l~~g~~dg----~i~i~d~~~~~~~~~~~~h~~~i--------~~i~~~p~~~~~l~s~----------s~ 388 (536)
+++|++...+++-+..| .|+++|+.+++.+..-......- ..++|..++ .++++. +.
T Consensus 136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~-~~~~~~~~~~~~~~~~~~ 214 (711)
T 4hvt_A 136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKD-TIIFNLVLHKNEITSSLY 214 (711)
T ss_dssp ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETT-EEEECCCCSTTCBCTTSS
T ss_pred ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCC-EEEEEeCCCCCCcCcCCC
Q ss_pred CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCe-----EEEEe---CCCcEEEEeCCCCCcc-eEEeccCCCC
Q 009380 389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSS-----LATTS---FDDTIGIWSGVNFENT-SMIHHNNQTG 459 (536)
Q Consensus 389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~-----l~t~s---~dg~I~iwd~~~~~~~-~~~~~~~~~~ 459 (536)
...|+.|.+-+.......+.......- -.++..++++.+ +++.+ ....+.+.|....... ..+.......
T Consensus 215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 293 (711)
T 4hvt_A 215 PNSLYIWKRGESIEKAKKLFEVPKEYI-YVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDAT 293 (711)
T ss_dssp BCEEEEEETTSCGGGCEEEEECCTTSC-EEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTCE
T ss_pred CCEEEEEECCCChHHCeEEeccCCCce-EEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcce
Q ss_pred ceeeeeEEEEcCCCCEEEEEcC----------CCcEEEEcCCc-------cccceeccCCceeeeeeeEeecCCCCCEEE
Q 009380 460 RWISSFRAIWGWDDSCVFIGNM----------TRTVEVISPAQ-------RRSVATLQSPYISAIPCRFHAHPHQVGTLA 522 (536)
Q Consensus 460 ~~~~~~~~~~s~~g~~l~~gs~----------dg~I~v~d~~~-------~~~~~~l~~~~~~~~~~~~~~~p~~~~~la 522 (536)
+.+..++.+++.... .+.|.+.++.+ ......+-.+........+.+. .+.+++
T Consensus 294 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~l~~ 364 (711)
T 4hvt_A 294 -------LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTT--KDRVFL 364 (711)
T ss_dssp -------EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEEC--SSCEEE
T ss_pred -------EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEE--CCEEEE
Q ss_pred EEccCCeEEEEecC
Q 009380 523 GATGGGQVYVWTSD 536 (536)
Q Consensus 523 sgs~Dg~v~iW~~d 536 (536)
+...+|.-+|+-++
T Consensus 365 ~~~~~~~~~l~~~~ 378 (711)
T 4hvt_A 365 ATYDNVVAKVVTFT 378 (711)
T ss_dssp EEEETTEEEEEEEC
T ss_pred EEEECCEEEEEEEE
No 364
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=64.65 E-value=93 Score=29.13 Aligned_cols=204 Identities=6% Similarity=0.042 Sum_probs=111.1
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECC---CCCC--CCCceEEec--cCCCCEEEEEEec---CCCCEEEEEECC
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLD---SQQD--EDNGIYLFR--THLGPISGIVTQQ---YCLSKIFTSCYD 304 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~---~~~~--~~~~~~~~~--~h~~~V~~l~~~~---~~~~~l~s~s~d 304 (536)
+.+..+.... ....|+.-+..|.++-.... .... .+..+..+. .....|.++...+ +. .+++.++.+
T Consensus 42 D~~~~~~~~~--t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e-~~~v~~T~~ 118 (327)
T 3uc1_A 42 DIVAHFFVCS--THDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDA-PYLVLATRN 118 (327)
T ss_dssp GCEEEEEEEE--TTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSS-SEEEEEETT
T ss_pred CEEEEEEEeC--CCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCC-CEEEEEcCC
Confidence 3455555555 55566666677877655543 2110 122211111 1234566655444 34 799999999
Q ss_pred CeEEEEECCC-------CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC--C----Ccc---c--eeEecc
Q 009380 305 GLIRLMDAEK-------EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR--S----RKS---A--TEWLLH 366 (536)
Q Consensus 305 g~I~vwd~~~-------~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~--~----~~~---~--~~~~~h 366 (536)
|.|+...+.. +.....+.....+..+...... ..|+..+..|.+..+... . +.. + ..+. .
T Consensus 119 G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~-d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~ 196 (327)
T 3uc1_A 119 GLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAG-DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-I 196 (327)
T ss_dssp SEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTT-CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-T
T ss_pred CEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCC-CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-C
Confidence 9999988653 2222222234455555554444 578888999999888776 2 111 1 1122 3
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC-----CCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEE
Q 009380 367 EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD-----KPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441 (536)
Q Consensus 367 ~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~-----~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iw 441 (536)
...|.++...+.+ ..++..+..|.++.-.+...... ....+.+..-...+..+....+...++..+.+|.+.-+
T Consensus 197 ~d~Vv~~~~~~~~-~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~ 275 (327)
T 3uc1_A 197 DDRLLSLNVVREG-TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRT 275 (327)
T ss_dssp TCCEEEEEECCTT-CEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEE
T ss_pred CCEEEEEEEECCC-CEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEE
Confidence 4567776666544 57888889999998876543211 11111111212334444443344456666667766666
Q ss_pred eCC
Q 009380 442 SGV 444 (536)
Q Consensus 442 d~~ 444 (536)
+..
T Consensus 276 ~~~ 278 (327)
T 3uc1_A 276 AAR 278 (327)
T ss_dssp EGG
T ss_pred ehh
Confidence 543
No 365
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=63.00 E-value=1.6e+02 Score=31.28 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=77.7
Q ss_pred cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEE-e----cc----CCCCEEEEEEecCCCCEEEEEEC
Q 009380 233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYL-F----RT----HLGPISGIVTQQYCLSKIFTSCY 303 (536)
Q Consensus 233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~-~----~~----h~~~V~~l~~~~~~~~~l~s~s~ 303 (536)
-.+.|.+|+++|. +...+.++...|.|.. ..+.......+.. . .+ ....|.+|++.|..++.++.+..
T Consensus 19 ~~g~i~~i~~~p~-~~~~~y~~~~~ggv~~--S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g 95 (763)
T 3a0f_A 19 GGGFISGLVAHPT-EKDLIYARTDIGGTYR--WNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQG 95 (763)
T ss_dssp BCSCEEEEEECSS-STTCEEEEESSSCEEE--EETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEEC
T ss_pred CCCceeEEEeCCC-CCCEEEEEeccCcEEE--ECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEec
Confidence 4578999999995 3355666665565443 3322110111111 0 01 22458999999865566665543
Q ss_pred C-----CeEEEE-ECCCCe-EEEeec-C------CCc--eeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec--
Q 009380 304 D-----GLIRLM-DAEKEV-FDLVYS-S------EYA--VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL-- 365 (536)
Q Consensus 304 d-----g~I~vw-d~~~~~-~~~~~~-~------~~~--i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-- 365 (536)
. ....|| ....++ ...+.. . ... ...++++|.++..+++++..+.|.. ....++.-..+..
T Consensus 96 ~~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~TW~~~~~~~ 174 (763)
T 3a0f_A 96 DYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQTWSRMNQLP 174 (763)
T ss_dssp SCTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSSCEECTTSC
T ss_pred ccccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcCccccccCc
Confidence 2 112333 333332 222211 0 111 1468888876677777776544432 2222332111111
Q ss_pred ----cCCCeEEEEEecCCCCEEEEEeCCC
Q 009380 366 ----HEARINTIDFNPRNPNIMATSSTDG 390 (536)
Q Consensus 366 ----h~~~i~~i~~~p~~~~~l~s~s~dg 390 (536)
....+..|.++|.++..++.+..++
T Consensus 175 ~~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 175 DSSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CCSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred ccCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 1134778999987655556665554
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=61.98 E-value=20 Score=39.45 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=32.8
Q ss_pred CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380 415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH 453 (536)
Q Consensus 415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~ 453 (536)
..+.++...++..+++|-|.|+++|+|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356677788888899999999999999999988777654
No 367
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=54.38 E-value=1.4e+02 Score=27.85 Aligned_cols=194 Identities=8% Similarity=0.045 Sum_probs=107.8
Q ss_pred CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC---C------CeE
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE---K------EVF 317 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~---~------~~~ 317 (536)
+..++++.+.+|.|+--.+..-.........++.. +.+..+...... +.|+..+..|.+.-+... . |..
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~-d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTK-DVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETT-SEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCC-CEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 56788899999999877654210001111223333 344444444444 778888888887666542 1 221
Q ss_pred E-E--eecCCCceeEEEecCC--CCCEEEEEECCCeEEEEECCCC--------ccceeEeccCCCeEEEEEecCCCCEEE
Q 009380 318 D-L--VYSSEYAVFSLSQQPN--NVNTLYFGEGQGGLNIWDVRSR--------KSATEWLLHEARINTIDFNPRNPNIMA 384 (536)
Q Consensus 318 ~-~--~~~~~~~i~~l~~~~~--~~~~l~~g~~dg~i~i~d~~~~--------~~~~~~~~h~~~i~~i~~~p~~~~~l~ 384 (536)
. . .+..+..|.++...++ ...+++..+.+|.++...+... .....+.. .+.+-.+.....+ ..++
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~-~~i~ 159 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGM-NELF 159 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSC-SEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCC-CEEE
Confidence 1 1 1223445665433332 1257889999999999987421 11122332 2555555555433 4677
Q ss_pred EEeCCCcEEEEeCCCCCCCC-----CCcceeecccCceeEEEEccCCC-eEEEEeCCCcEEEEeCCC
Q 009380 385 TSSTDGTACIWDLRSMATDK-----PEPMKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 385 s~s~dg~i~iwdl~~~~~~~-----~~~~~~~~~~~~v~~l~~sp~g~-~l~t~s~dg~I~iwd~~~ 445 (536)
..+.+|.+..+......... ...+.+ .....|.++...+++. .|++.+..|..+..++..
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L-~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNL-KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCC-CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEe-CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 77788998888765422111 011111 2344566665444444 788888899888877654
No 368
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=48.73 E-value=2.7e+02 Score=29.50 Aligned_cols=154 Identities=16% Similarity=0.106 Sum_probs=81.8
Q ss_pred CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec------------CCCceeEEEecCCCCCEEEEEECC--
Q 009380 281 HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS------------SEYAVFSLSQQPNNVNTLYFGEGQ-- 346 (536)
Q Consensus 281 h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~------------~~~~i~~l~~~~~~~~~l~~g~~d-- 346 (536)
-.+.|.+|.++|.++..++.+...|.|...+=.......+.. ....+.++++.|.+++.++++...
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~ 98 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYV 98 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCT
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccc
Confidence 456899999999987888888877766554433333333332 124589999999666677766532
Q ss_pred ---CeEEEEEC-CCCccceeEecc-------CCC--eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--
Q 009380 347 ---GGLNIWDV-RSRKSATEWLLH-------EAR--INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-- 411 (536)
Q Consensus 347 ---g~i~i~d~-~~~~~~~~~~~h-------~~~--i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-- 411 (536)
....||-- ..++.-..+... ... ...|+++|.++..+..+...+.|.. ....++. -..+..+.
T Consensus 99 ~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~T-W~~~~~~~~~ 176 (763)
T 3a0f_A 99 QWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQT-WSRMNQLPDS 176 (763)
T ss_dssp TTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSS-CEECTTSCCC
T ss_pred cCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcC-ccccccCccc
Confidence 12333332 233332222210 111 1468888876566666665544332 2222211 00111000
Q ss_pred -cccCceeEEEEccC-CCeEEEEeCCC
Q 009380 412 -SHKRAVHSAYFSPS-GSSLATTSFDD 436 (536)
Q Consensus 412 -~~~~~v~~l~~sp~-g~~l~t~s~dg 436 (536)
.....+..|.++|. ...++.+..++
T Consensus 177 ~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 177 STYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCCccceEEEEECCCCCCEEEEEEeCC
Confidence 11235778899984 34566666554
No 369
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=45.94 E-value=50 Score=37.16 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=30.4
Q ss_pred ceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe
Q 009380 326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL 364 (536)
Q Consensus 326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 364 (536)
.+.+++..++. .++++-+.|+++++|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~-~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTT-TEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCc-cEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44555666665 799999999999999999999877754
No 370
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=43.01 E-value=2.3e+02 Score=26.99 Aligned_cols=200 Identities=9% Similarity=0.064 Sum_probs=106.0
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC----CC---ceEEecc-CCCCEEEEEEecCCCCEEEEEECCCe
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE----DN---GIYLFRT-HLGPISGIVTQQYCLSKIFTSCYDGL 306 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~----~~---~~~~~~~-h~~~V~~l~~~~~~~~~l~s~s~dg~ 306 (536)
..+..++++. .....++-+.+|.|+.|-......- .. ....+.. ....|..|+... ...+....||.
T Consensus 105 ~~~~~v~i~~--G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~ 179 (389)
T 3kci_A 105 VFIKKVAVNS--GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGD 179 (389)
T ss_dssp SCEEEEEECT--TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSC
T ss_pred CceeEEEECc--CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCe
Confidence 3455566665 5566677788999999975431100 00 0111111 123566666543 56667778999
Q ss_pred EEEEECCCC------------eEEEeec-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccc-----------ee
Q 009380 307 IRLMDAEKE------------VFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA-----------TE 362 (536)
Q Consensus 307 I~vwd~~~~------------~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~-----------~~ 362 (536)
|..|-.... .+..+.. ....|..++..... ...++-..+|.|+.|-......+ ..
T Consensus 180 v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~-~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 258 (389)
T 3kci_A 180 LYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGD-AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMK 258 (389)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSS-CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEE
T ss_pred EEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCC-cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEE
Confidence 999976431 1111111 23456677665422 46666788999999965421110 11
Q ss_pred Ee-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC----CC---Ccceeec-ccCceeEEEEccCCCeEEEEe
Q 009380 363 WL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD----KP---EPMKVLS-HKRAVHSAYFSPSGSSLATTS 433 (536)
Q Consensus 363 ~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~----~~---~~~~~~~-~~~~v~~l~~sp~g~~l~t~s 433 (536)
+. .....|..|+... ...+.-..||.|+.|=....... .. .+..+.. ....|..|+.. ..+.+...
T Consensus 259 v~~~~~~~v~~v~~G~---~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~ 333 (389)
T 3kci_A 259 IDSLTGLGVVKVECGS---QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCT 333 (389)
T ss_dssp CGGGTTSCEEEEEEET---TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEE
T ss_pred ecccCCCcEEEEeCCC---CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEEC
Confidence 11 1223466676653 34555567999999976431100 00 0111111 12345555543 33455557
Q ss_pred CCCcEEEEeCCC
Q 009380 434 FDDTIGIWSGVN 445 (536)
Q Consensus 434 ~dg~I~iwd~~~ 445 (536)
.||.|..|=...
T Consensus 334 ~~G~v~~wG~n~ 345 (389)
T 3kci_A 334 EDGEVYTWGDND 345 (389)
T ss_dssp TTCCEEEEECCT
T ss_pred CCCCEEEeeCCC
Confidence 788898886543
No 371
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=42.77 E-value=2.6e+02 Score=27.57 Aligned_cols=238 Identities=8% Similarity=-0.065 Sum_probs=111.4
Q ss_pred ceEEEEEEecCCcc-EEEEEeCCCcEEEEECCCCCCCCCceEEec---------cCCCCEEEEEEecC---CCCEEEEE-
Q 009380 236 RITQMKFLPCSDVR-MVVAGSKLGNITFWNLDSQQDEDNGIYLFR---------THLGPISGIVTQQY---CLSKIFTS- 301 (536)
Q Consensus 236 ~I~~v~~~p~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~---------~h~~~V~~l~~~~~---~~~~l~s~- 301 (536)
.-..|+|.| ++. .|+++...|.|++++...... ...+..+. ........|+|+|+ + .+|+..
T Consensus 15 ~P~~~a~~p--dG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n-~~lYv~y 90 (463)
T 2wg3_C 15 QPVGALHSG--DGSQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKN-GKLYVSY 90 (463)
T ss_dssp SEEEEECCS--SSSCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHH-CEEEEEE
T ss_pred CceEEEECC--CCCeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCCCcCC-CEEEEEE
Confidence 457899999 875 444556789999997542110 11222221 11356889999996 2 234333
Q ss_pred ECC------------CeEEEEECCCC----------eEEEee---cCCCceeEEEecCCCCCEEEEEECC----------
Q 009380 302 CYD------------GLIRLMDAEKE----------VFDLVY---SSEYAVFSLSQQPNNVNTLYFGEGQ---------- 346 (536)
Q Consensus 302 s~d------------g~I~vwd~~~~----------~~~~~~---~~~~~i~~l~~~~~~~~~l~~g~~d---------- 346 (536)
+.+ ..|.-|.+..+ +.+... ........|.|.|++ .+.++.+..
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~Gd~~~~~~~~~~~ 169 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIILGDGMITLDDMEEM 169 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEECCTTCCHHHHHHC
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEeCCCCCCCCccccc
Confidence 321 14444655321 111111 123456789999998 554444332
Q ss_pred -------CeEEEEECCCCc-------------------cceeEe-ccCCCeEEEEEecCCC----C-EEEEEeCCC----
Q 009380 347 -------GGLNIWDVRSRK-------------------SATEWL-LHEARINTIDFNPRNP----N-IMATSSTDG---- 390 (536)
Q Consensus 347 -------g~i~i~d~~~~~-------------------~~~~~~-~h~~~i~~i~~~p~~~----~-~l~s~s~dg---- 390 (536)
|.|.-.|..... ....+. +|.. ...++|+|... . ++..+...|
T Consensus 170 q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~ 248 (463)
T 2wg3_C 170 DGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRS 248 (463)
T ss_dssp TTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS-CCBEEEESSCSSTTCSEEEEEECC------
T ss_pred cCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC-cceEEECCCCCCcccceEEEecccCCCCCC
Confidence 335555544310 011222 3433 35689999621 2 344443212
Q ss_pred cEEEEeCCCCCCC-CCCcceeeccc--CceeEEEEcc-------CCCeEEEEeCCCcEEEEeCCCCCcceE---Ee-cc-
Q 009380 391 TACIWDLRSMATD-KPEPMKVLSHK--RAVHSAYFSP-------SGSSLATTSFDDTIGIWSGVNFENTSM---IH-HN- 455 (536)
Q Consensus 391 ~i~iwdl~~~~~~-~~~~~~~~~~~--~~v~~l~~sp-------~g~~l~t~s~dg~I~iwd~~~~~~~~~---~~-~~- 455 (536)
.-.|..+..+... ...++....|. ..+..+.|-. .|.+ +.+...+.|....+........ +. ..
T Consensus 249 ~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~-f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~ 327 (463)
T 2wg3_C 249 SARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSY-VFGDRNGNFLTLQQSPVTKQWQEKPLCLGTS 327 (463)
T ss_dssp CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCE-EEEETTSCEEEEEC-----CCEEEEECEEET
T ss_pred CCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceE-EEecCCCcEEEEEeCCCCceeeEEEeecCCc
Confidence 1234444333211 12333444444 5778888853 2334 4455557766666543322111 10 00
Q ss_pred --CCCCceeeeeEEEEcCCCCEEEEEc
Q 009380 456 --NQTGRWISSFRAIWGWDDSCVFIGN 480 (536)
Q Consensus 456 --~~~~~~~~~~~~~~s~~g~~l~~gs 480 (536)
.....+.....+...|||.++++..
T Consensus 328 ~~~~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 328 GSCRGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp TSSCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccccccCcceEEEECCCCCEEEEec
Confidence 0011112334477899998877664
No 372
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=42.48 E-value=2.1e+02 Score=26.59 Aligned_cols=238 Identities=11% Similarity=0.034 Sum_probs=127.1
Q ss_pred CccEEEEEeCCCcEEEEECCC-----CCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEE---CCC----
Q 009380 247 DVRMVVAGSKLGNITFWNLDS-----QQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD---AEK---- 314 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~-----~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd---~~~---- 314 (536)
+...+++-+.+|.|+--.+.+ ....+..-..++ ....+..+...... ..|+.-+..|.++... +..
T Consensus 2 ~E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~-d~ll~fT~~Gr~y~~~~~~lp~~~r~ 79 (327)
T 3uc1_A 2 AEDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTH-DLILFFTTQGRVYRAKAYDLPEASRT 79 (327)
T ss_dssp CCEEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETT-SEEEEEETTSEEEEEEGGGSCBCCSS
T ss_pred CccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCC-CEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 345788888888888665432 000011111122 22345555444444 6777777788766554 332
Q ss_pred --CeEE---EeecCCCceeEEEecCC--CCCEEEEEECCCeEEEEECCCCcc-------ceeEeccCCCeEEEEEecCCC
Q 009380 315 --EVFD---LVYSSEYAVFSLSQQPN--NVNTLYFGEGQGGLNIWDVRSRKS-------ATEWLLHEARINTIDFNPRNP 380 (536)
Q Consensus 315 --~~~~---~~~~~~~~i~~l~~~~~--~~~~l~~g~~dg~i~i~d~~~~~~-------~~~~~~h~~~i~~i~~~p~~~ 380 (536)
|... ..+.....|.++...++ ...++++.+.+|.++...+..... ...+.. .+.+..+......
T Consensus 80 ~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~- 157 (327)
T 3uc1_A 80 ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAG- 157 (327)
T ss_dssp SCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTT-
T ss_pred CCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCC-
Confidence 2211 11223455665544332 236899999999999988754221 122332 3455555554434
Q ss_pred CEEEEEeCCCcEEEEeCC--CCCCCCC-----CcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc----
Q 009380 381 NIMATSSTDGTACIWDLR--SMATDKP-----EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT---- 449 (536)
Q Consensus 381 ~~l~s~s~dg~i~iwdl~--~~~~~~~-----~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~---- 449 (536)
..++..+..|.+..+... ....... ..+. ......|.++...+.+.+|+..+..|.++.-.+......
T Consensus 158 d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~-L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~ 236 (327)
T 3uc1_A 158 DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMR-FNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGG 236 (327)
T ss_dssp CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSC-CCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeec-CCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCC
Confidence 467777788998888776 3221110 1111 133456777776666778999999999988876543321
Q ss_pred ---eEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380 450 ---SMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ 492 (536)
Q Consensus 450 ---~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~ 492 (536)
..+......+..+.. ....+...++..+.+|.+.-++...
T Consensus 237 ~G~~~~~l~~~~d~lv~~---~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 237 KGVLTVMYDRRRGRLVGA---LIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp CCEESSCCCTTTCSEEEE---EEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred CcEEEEEecCCCCeEEEE---EEeCCCccEEEEcCCCeEEEEehhh
Confidence 111111112332322 1223344666677777777776543
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=41.04 E-value=4.2e+02 Score=29.58 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=31.5
Q ss_pred ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380 416 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH 453 (536)
Q Consensus 416 ~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~ 453 (536)
.+.+++..++..++++-|.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44556667788899999999999999999998877654
No 374
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=30.70 E-value=3e+02 Score=24.79 Aligned_cols=202 Identities=10% Similarity=0.070 Sum_probs=110.4
Q ss_pred CCCEEEEEEecCCCCEEEEEECCCeEEEEE---CCCCeEEEeecCCCceeEEEecCC-CCCEEEEEECCCeEEEEECCCC
Q 009380 282 LGPISGIVTQQYCLSKIFTSCYDGLIRLMD---AEKEVFDLVYSSEYAVFSLSQQPN-NVNTLYFGEGQGGLNIWDVRSR 357 (536)
Q Consensus 282 ~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd---~~~~~~~~~~~~~~~i~~l~~~~~-~~~~l~~g~~dg~i~i~d~~~~ 357 (536)
.+.+..+...... ++|+.-+..|.++-.. +.......+...+..|..+.. .+ ....++..+.+|.++...+..-
T Consensus 23 gD~~~~~~~~~t~-~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 23 KAPVVNILRVPFT-EGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCCEEEEEEEETT-SCEEEEETTSEEEEECSHHHHTSEECCCSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CCeEEEEEEECCC-CEEEEEcCCCeEEEEEhhhCccCcccccCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 3456555555555 6677777788766543 222211112444566666644 32 2368999999999999987543
Q ss_pred c------cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC-----CCCcceeecccCceeEEEEccCC
Q 009380 358 K------SATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD-----KPEPMKVLSHKRAVHSAYFSPSG 426 (536)
Q Consensus 358 ~------~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~-----~~~~~~~~~~~~~v~~l~~sp~g 426 (536)
. ....+. -.+.+..+...... ..++..+..|.+..+........ ....+. ......|.++...+++
T Consensus 101 ~~~~~G~~~i~lk-egD~l~~~~~~~~~-~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~-L~~~d~vv~~~~~~~~ 177 (276)
T 3no0_A 101 EYKAQGMPIIKLT-EGDEVVSIASSVDE-THILLFTKKGRVARFSVREVPPSTPGARGVQGIK-LEKNDETSGLRIWNGE 177 (276)
T ss_dssp TTCSTTEECSCCC-TTCCEEEEEECCSS-CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-CCTTCCEEEEEEESSC
T ss_pred hhhcCCeEEEecC-CCCEEEEEEEeCCC-CEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEc-cCCCCEEEEEEEeCCC
Confidence 2 112222 23455555555433 46777788999888865432210 111111 1234566666655566
Q ss_pred CeEEEEeCCCcEEEEeCCCCCcce-----EEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEE--EcCCc
Q 009380 427 SSLATTSFDDTIGIWSGVNFENTS-----MIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEV--ISPAQ 492 (536)
Q Consensus 427 ~~l~t~s~dg~I~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v--~d~~~ 492 (536)
.+++..+..|.++...+....... .+.. ...+..+... . ..+...++..+.+|.+.. ++...
T Consensus 178 ~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~-~--~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 178 PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLI-P--IKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEE-E--ESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEE-E--eCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 788999999999988765432111 1111 2223222221 1 123345666677777777 76544
No 375
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=29.81 E-value=2.9e+02 Score=27.55 Aligned_cols=73 Identities=12% Similarity=0.154 Sum_probs=47.1
Q ss_pred ceEEEEEEec----CCccEEEEEeCCCcEEEEECCCCCC----CCCceEEec--cCCCCEEEEEEecCCCCEEEEEECCC
Q 009380 236 RITQMKFLPC----SDVRMVVAGSKLGNITFWNLDSQQD----EDNGIYLFR--THLGPISGIVTQQYCLSKIFTSCYDG 305 (536)
Q Consensus 236 ~I~~v~~~p~----~~~~~l~tg~~dg~v~iwd~~~~~~----~~~~~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg 305 (536)
..++|+.... .+-..++.|+.+|.|.-.-+..... ....+..+. ....+|..+.++++. .+|+.++.++
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~-~~Lyv~s~~~ 483 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQ-QQLYIGSTAG 483 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTT-TEEEEEBSSC
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCC-CEEEEEECCe
Confidence 5788877753 2346788899999886554432110 011222333 245789999999988 9999999888
Q ss_pred eEEE
Q 009380 306 LIRL 309 (536)
Q Consensus 306 ~I~v 309 (536)
.++|
T Consensus 484 V~~v 487 (495)
T 1q47_A 484 VAQL 487 (495)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 376
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=26.74 E-value=67 Score=33.78 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=30.0
Q ss_pred CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEec
Q 009380 415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHH 454 (536)
Q Consensus 415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~ 454 (536)
..|.++.+ +..++++-+.|.++|+||+.+++++.....
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34555555 477999999999999999999987776654
No 377
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=25.79 E-value=1.9e+02 Score=29.48 Aligned_cols=60 Identities=8% Similarity=0.011 Sum_probs=38.7
Q ss_pred ceeEEEecCCCCCEEEEEECC-------------CeEEEEECCCCccceeEecc-CCCeEEEEEecCCCCEEEEEe
Q 009380 326 AVFSLSQQPNNVNTLYFGEGQ-------------GGLNIWDVRSRKSATEWLLH-EARINTIDFNPRNPNIMATSS 387 (536)
Q Consensus 326 ~i~~l~~~~~~~~~l~~g~~d-------------g~i~i~d~~~~~~~~~~~~h-~~~i~~i~~~p~~~~~l~s~s 387 (536)
....|.|.+++ ++.+ ++.. ..|..++..+++....+... ...++.++|+||+..++++.-
T Consensus 477 sPDnL~fd~~G-~LWf-~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 477 SPDGLGFDKAG-RLWI-LTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CEEEEEECTTC-CEEE-EECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCceEECCCC-CEEE-EeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 45678999987 5544 2221 26777777777765545432 457899999999854554443
No 378
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=24.63 E-value=4.1e+02 Score=24.31 Aligned_cols=195 Identities=10% Similarity=0.045 Sum_probs=106.3
Q ss_pred CccEEEEEeCCCcEEEEECCCCCC-----CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC---C----
Q 009380 247 DVRMVVAGSKLGNITFWNLDSQQD-----EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE---K---- 314 (536)
Q Consensus 247 ~~~~l~tg~~dg~v~iwd~~~~~~-----~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~---~---- 314 (536)
+..++++.+.+|.|+--.+..-.. .+.....++.+ +.+..+...... +.|+..+..|.++-+... .
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~-~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTH-DHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETT-CEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCC-CEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 556888999999998777654110 01111122333 334444444444 678888888887666542 1
Q ss_pred --CeEEE---eecCCCceeEEEecC--CCCCEEEEEECCCeEEEEECCCCc-------cceeEeccCCCeEEEEEecCCC
Q 009380 315 --EVFDL---VYSSEYAVFSLSQQP--NNVNTLYFGEGQGGLNIWDVRSRK-------SATEWLLHEARINTIDFNPRNP 380 (536)
Q Consensus 315 --~~~~~---~~~~~~~i~~l~~~~--~~~~~l~~g~~dg~i~i~d~~~~~-------~~~~~~~h~~~i~~i~~~p~~~ 380 (536)
|.... .+..+..|.++...+ ....+++..+.+|.++...+.... ....+..+ +.+..+......
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~- 157 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE- 157 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT-
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC-
Confidence 22111 123345566654421 222578999999999999774211 12223333 555555554433
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCC----CcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380 381 NIMATSSTDGTACIWDLRSMATDKP----EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 445 (536)
Q Consensus 381 ~~l~s~s~dg~i~iwdl~~~~~~~~----~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~ 445 (536)
..++..+.+|.+..+.......... ...........|.++....++..+++.+..|.++-.++..
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 4566777788888887654321110 1001112345666665555566788889999988887643
No 379
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=24.05 E-value=4.2e+02 Score=24.28 Aligned_cols=159 Identities=12% Similarity=0.075 Sum_probs=93.6
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC-----CCCc---eEEeccCCCCEEEEEEec---CCCCEEEEEEC
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD-----EDNG---IYLFRTHLGPISGIVTQQ---YCLSKIFTSCY 303 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~-----~~~~---~~~~~~h~~~V~~l~~~~---~~~~~l~s~s~ 303 (536)
+.+..+.... ....++..+..|.++-+....-.. .+.. ...+.. ...|.++...+ +. .+|+.++.
T Consensus 47 D~l~~~~~~~--~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~-~~ll~~T~ 122 (312)
T 1suu_A 47 DEIVIALCVN--THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGD-QEEILTIKNSKDLTDD-AYLLLTTA 122 (312)
T ss_dssp CCEEEEEEEE--TTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCT-TCCEEEEEEESCCCTT-CEEEEEET
T ss_pred CEEEEEEEEC--CCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCC-CCEEEEEEEeccCCCC-CEEEEEeC
Confidence 3455555555 556777778889887776643110 0111 111222 34455554433 33 78999999
Q ss_pred CCeEEEEECCC-------CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC----Cc---cceeEec-cCC
Q 009380 304 DGLIRLMDAEK-------EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS----RK---SATEWLL-HEA 368 (536)
Q Consensus 304 dg~I~vwd~~~-------~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~----~~---~~~~~~~-h~~ 368 (536)
.|.++...+.. +...........+..+.....+ ..++..+.+|.+..+.... ++ -+..+.. ..+
T Consensus 123 ~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~-~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d 201 (312)
T 1suu_A 123 SGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD-EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGD 201 (312)
T ss_dssp TSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT-CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTC
T ss_pred CCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC-CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCC
Confidence 99999988742 2222222334566666555433 5788899999999998753 11 1222221 245
Q ss_pred CeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380 369 RINTIDFNPRNPNIMATSSTDGTACIWDLRS 399 (536)
Q Consensus 369 ~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~ 399 (536)
.|.++....++ ..+++.+..|..+..++..
T Consensus 202 ~vv~~~~v~~~-~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 202 LFVKVLSVKEN-PYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEECTTC-SEEEEEETTSEEEEEEGGG
T ss_pred EEEEEEEECCC-CeEEEEECCCceEEEEHHH
Confidence 56666555444 4677888899999988765
No 380
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=23.63 E-value=4.2e+02 Score=24.18 Aligned_cols=204 Identities=9% Similarity=0.041 Sum_probs=109.9
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCC---CCC--CCCceE---EeccCCCCEEEEEEe---cCCCCEEEEEEC
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDS---QQD--EDNGIY---LFRTHLGPISGIVTQ---QYCLSKIFTSCY 303 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~---~~~--~~~~~~---~~~~h~~~V~~l~~~---~~~~~~l~s~s~ 303 (536)
+.+..+.... ....|+..+..|.++-+.... ... .+..+. .+. ....|.++... .++ .+++.++.
T Consensus 42 D~l~~~~~~~--~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~-~~ll~~T~ 117 (307)
T 1zi0_A 42 DFIDRLLVAN--THDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEG-VKVFMATA 117 (307)
T ss_dssp CCEEEEEEEE--TTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTT-CEEEEEET
T ss_pred CEEEEEEEEC--CCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCC-cEEEEEeC
Confidence 3444554554 556677777788876665532 111 111111 122 33456665443 233 68999999
Q ss_pred CCeEEEEECCC-------CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC----Cc---cceeEe-ccCC
Q 009380 304 DGLIRLMDAEK-------EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS----RK---SATEWL-LHEA 368 (536)
Q Consensus 304 dg~I~vwd~~~-------~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~----~~---~~~~~~-~h~~ 368 (536)
.|.++...+.. +.....+...+.+..+...... ..++..+.+|.+..++... +. -+.-+. ...+
T Consensus 118 ~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~-~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d 196 (307)
T 1zi0_A 118 NGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE-DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGD 196 (307)
T ss_dssp TSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTT-CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTC
T ss_pred CCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCC-CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCC
Confidence 99999987642 2121112223555555554443 5788889999998887642 11 111122 1345
Q ss_pred CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC-----CCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeC
Q 009380 369 RINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK-----PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG 443 (536)
Q Consensus 369 ~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~-----~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~ 443 (536)
.|.++...+++ ..+++.+..|.++-.++....... .....+..-.+.+-.+....+...++..+.+|.+.-+++
T Consensus 197 ~Vv~~~~~~~~-~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~ 275 (307)
T 1zi0_A 197 KVVSLIVPRGD-GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRV 275 (307)
T ss_dssp CEEEEECCCSS-CEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEG
T ss_pred EEEEEEEecCC-CEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEec
Confidence 67777655444 468888889999988774422110 111222222244444444333444666666776666655
Q ss_pred C
Q 009380 444 V 444 (536)
Q Consensus 444 ~ 444 (536)
.
T Consensus 276 ~ 276 (307)
T 1zi0_A 276 S 276 (307)
T ss_dssp G
T ss_pred c
Confidence 4
No 381
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=23.46 E-value=3.2e+02 Score=27.49 Aligned_cols=73 Identities=8% Similarity=0.095 Sum_probs=47.9
Q ss_pred CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec-cCCCCE-EEEEEecCCCCEEEEEECCCeEEE
Q 009380 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR-THLGPI-SGIVTQQYCLSKIFTSCYDGLIRL 309 (536)
Q Consensus 235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V-~~l~~~~~~~~~l~s~s~dg~I~v 309 (536)
...++|+.....+-..++.|+.+|.|.-.-+..... ...+..+. ....+| ..+.++++. ..|+.++.++.++|
T Consensus 387 ~~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~-~~~~ee~~v~~~~pi~~~l~l~~~~-~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 387 IQLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSD-GHPYSTQSIQQGSAVSRDLTFDGTF-EHLYVMTQSTLLKV 461 (528)
T ss_dssp CCEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCC-SCCSEEEESSTTSCCCSCCEECTTS-SEEEEECSSCEEEE
T ss_pred CceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCC-eeEEeeeccCCCCcceeeEEEecCC-CEEEEEeCCEEEEE
Confidence 357888887654556788899999987655542111 11222221 345677 489999887 88999988876665
No 382
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=23.08 E-value=1.2e+02 Score=31.88 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=27.4
Q ss_pred EEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec
Q 009380 285 ISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS 322 (536)
Q Consensus 285 V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~ 322 (536)
|.++.+. . .++++-+.|.++|+|++.++.+.....
T Consensus 224 Is~~~~~--~-~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 224 ISCKLFH--E-RYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEET--T-TEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEeccC--C-cEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 5555443 3 799999999999999999998765543
No 383
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=22.52 E-value=6.2e+02 Score=25.68 Aligned_cols=176 Identities=13% Similarity=0.138 Sum_probs=98.4
Q ss_pred CCCCEEEEEEecCCCCEEEEEECCCe----------------------------EEEEECCCCeEEEeecC---CCc---
Q 009380 281 HLGPISGIVTQQYCLSKIFTSCYDGL----------------------------IRLMDAEKEVFDLVYSS---EYA--- 326 (536)
Q Consensus 281 h~~~V~~l~~~~~~~~~l~s~s~dg~----------------------------I~vwd~~~~~~~~~~~~---~~~--- 326 (536)
|-.++....|.-||..-|+....+|+ |.++|=.+++....... ...
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 55567777777777667777777665 67777766655433221 111
Q ss_pred ------------eeEEEecCCCCCEEEEEE---CCCeEEEEECCCCccceeEeccC-------------CCeEEEEEecC
Q 009380 327 ------------VFSLSQQPNNVNTLYFGE---GQGGLNIWDVRSRKSATEWLLHE-------------ARINTIDFNPR 378 (536)
Q Consensus 327 ------------i~~l~~~~~~~~~l~~g~---~dg~i~i~d~~~~~~~~~~~~h~-------------~~i~~i~~~p~ 378 (536)
..++++.....-.++.+- ....|..||.+.++....+.-+. ..+.-..+.-|
T Consensus 257 WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgD 336 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGD 336 (591)
T ss_dssp GTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSS
T ss_pred cccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCC
Confidence 223333221111222222 12358888887776544442111 22333445555
Q ss_pred CCCEEEEEe----CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC--CCeEEEEeCCC----cEEEEeCCCCCc
Q 009380 379 NPNIMATSS----TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS--GSSLATTSFDD----TIGIWSGVNFEN 448 (536)
Q Consensus 379 ~~~~l~s~s----~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~--g~~l~t~s~dg----~I~iwd~~~~~~ 448 (536)
|..-|+.|+ .||++ +|... .+|...+.-..|.|+ |..++.+..++ -..+.|..+++.
T Consensus 337 G~dEIv~Gs~~iD~dG~~-L~st~------------~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~v 403 (591)
T 2zux_A 337 GKDEIIFGSMAVDHDGKG-MYSTG------------LGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKI 403 (591)
T ss_dssp SSCEEEETTEEECTTSCE-EEECS------------CCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCE
T ss_pred CCceEEEeeeEECCCCCE-eeeCC------------CCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcE
Confidence 655555554 23432 34321 278888888889986 55677776652 356789999988
Q ss_pred ceEEeccCCCCceeeeeEEEEcCC
Q 009380 449 TSMIHHNNQTGRWISSFRAIWGWD 472 (536)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~s~~ 472 (536)
+.........++.+. ..|.|+
T Consensus 404 lw~~~~~~d~Gr~~~---~Didp~ 424 (591)
T 2zux_A 404 LWGVYAGKDVGRGMA---ADIDPR 424 (591)
T ss_dssp EEEECCSSCCCCEEE---ECCCTT
T ss_pred EEEcCCCCCCCceeE---EecCCC
Confidence 877755444555433 445555
No 384
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=21.15 E-value=1e+02 Score=18.30 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=13.2
Q ss_pred ccCCHHHHHHHHhHHHHHHH
Q 009380 4 EKLTEYERKRLENIKRNEEM 23 (536)
Q Consensus 4 ~~~~~~e~~r~~~i~~n~~~ 23 (536)
.+||+-|+.|+-+=+|-+.|
T Consensus 2 sels~~ekaRlrRERR~aKi 21 (38)
T 3zs9_C 2 SELTEAEKRRLLRERRQKKF 21 (38)
T ss_dssp --CCHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHH
Confidence 47999999998765554443
No 385
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=20.38 E-value=4.1e+02 Score=27.09 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=40.1
Q ss_pred CCEEEEEEecCCCCEEEEEEC------------CCeEEEEECCCCeEEEeec--CCCceeEEEecCCCCCEEEEE
Q 009380 283 GPISGIVTQQYCLSKIFTSCY------------DGLIRLMDAEKEVFDLVYS--SEYAVFSLSQQPNNVNTLYFG 343 (536)
Q Consensus 283 ~~V~~l~~~~~~~~~l~s~s~------------dg~I~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~l~~g 343 (536)
.....|.|.++| .+.+.... ...|..++..++++..+.. ....++.++|+|++ ..|+++
T Consensus 476 nsPDnL~fd~~G-~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~-ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQ-KTLFVG 548 (592)
T ss_dssp CCEEEEEECTTC-CEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTS-SEEEEE
T ss_pred CCCCceEECCCC-CEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCC-CEEEEE
Confidence 346789999998 66653321 1256777777777766653 24678999999998 566554
No 386
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=20.01 E-value=2.3e+02 Score=29.00 Aligned_cols=55 Identities=11% Similarity=0.157 Sum_probs=0.0
Q ss_pred EEecCCCCCEEEEEECC------------CeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEE
Q 009380 330 LSQQPNNVNTLYFGEGQ------------GGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMAT 385 (536)
Q Consensus 330 l~~~~~~~~~l~~g~~d------------g~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s 385 (536)
|+|++.+ ++++.-..+ ..+.+.+..+++....+. .....++.++|+|++..+|+.
T Consensus 481 L~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 481 LGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Done!