BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009383
(536 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YIU|A Chain A, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
The Soil Bacterium Paracoccus Denitrificans At 2.7
Angstrom Resolution
pdb|2YIU|D Chain D, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
The Soil Bacterium Paracoccus Denitrificans At 2.7
Angstrom Resolution
Length = 450
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 141 PYGYSRTCYALSLILLVFFTISAIVGCIVLYTGQGKFHSSTLDTLNYVVKQAHITSE 197
PY + +AL+++L+VFF AIVG + Y G H N +V AHI E
Sbjct: 246 PYFVIKDLFALAVVLVVFF---AIVGFMPNYLG----HPDNYIEANPLVTPAHIVPE 295
>pdb|2QJP|A Chain A, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|D Chain D, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|G Chain G, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|J Chain J, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
Length = 428
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 141 PYGYSRTCYALSLILLVFFTISAIVGCIVLYTGQGKFHSSTLDTLNYVVKQAHITSE 197
PY + +AL+++LLVFF AIVG + Y G H N + AHI E
Sbjct: 244 PYFIIKDVFALAVVLLVFF---AIVGFMPNYLG----HPDNYIEANPLSTPAHIVPE 293
>pdb|2QJK|A Chain A, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|D Chain D, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|G Chain G, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|J Chain J, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|M Chain M, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|P Chain P, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
Length = 428
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 141 PYGYSRTCYALSLILLVFFTISAIVGCIVLYTGQGKFHSSTLDTLNYVVKQAHITSE 197
PY + +AL+++LLVFF AIVG + Y G H N + AHI E
Sbjct: 244 PYFIIKDVFALAVVLLVFF---AIVGFMPNYLG----HPDNYIEANPLRTPAHIVPE 293
>pdb|2FYN|A Chain A, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|D Chain D, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|G Chain G, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|J Chain J, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|M Chain M, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|P Chain P, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2QJY|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|D Chain D, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|G Chain G, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|J Chain J, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|M Chain M, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|P Chain P, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
Length = 445
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 141 PYGYSRTCYALSLILLVFFTISAIVGCIVLYTGQGKFHSSTLDTLNYVVKQAHITSE 197
PY + +AL+++LLVFF AIVG + Y G H N + AHI E
Sbjct: 246 PYFIIKDVFALAVVLLVFF---AIVGFMPNYLG----HPDNYIEANPLRTPAHIVPE 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,285,491
Number of Sequences: 62578
Number of extensions: 533757
Number of successful extensions: 1323
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1323
Number of HSP's gapped (non-prelim): 4
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)