Query 009383
Match_columns 536
No_of_seqs 147 out of 189
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 12:27:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07912 Tweety_N N-terminal do 100.0 6.1E-43 1.3E-47 370.9 29.8 369 76-520 12-406 (418)
2 PF04906 Tweety: Tweety; Inte 100.0 1.5E-36 3.2E-41 323.4 22.4 361 87-519 1-382 (406)
3 KOG4433 Tweety transmembrane/c 100.0 4.8E-30 1E-34 269.3 30.8 361 77-518 17-405 (526)
4 PF05478 Prominin: Prominin; 98.4 7.4E-05 1.6E-09 87.2 26.7 61 128-191 112-181 (806)
5 cd07912 Tweety_N N-terminal do 96.9 0.094 2E-06 57.1 20.0 10 337-346 290-299 (418)
6 KOG4331 Polytopic membrane pro 96.7 0.018 3.8E-07 66.2 12.6 82 445-528 737-819 (865)
7 PF04906 Tweety: Tweety; Inte 96.3 0.2 4.3E-06 54.5 17.3 182 116-302 30-235 (406)
8 PF05478 Prominin: Prominin; 93.8 1.3 2.9E-05 52.2 15.4 54 469-522 739-792 (806)
9 PF00957 Synaptobrevin: Synapt 89.1 2.1 4.6E-05 36.2 7.7 20 225-244 34-53 (89)
10 KOG0860 Synaptobrevin/VAMP-lik 80.0 19 0.00042 32.7 9.7 33 213-245 48-80 (116)
11 PF00957 Synaptobrevin: Synapt 78.0 29 0.00062 29.3 9.9 12 233-244 35-46 (89)
12 KOG4331 Polytopic membrane pro 71.5 9.2 0.0002 44.9 6.7 98 98-195 93-198 (865)
13 PF11166 DUF2951: Protein of u 71.2 72 0.0016 28.1 10.5 59 226-284 36-97 (98)
14 TIGR00383 corA magnesium Mg(2+ 69.2 57 0.0012 33.7 11.6 20 261-280 259-278 (318)
15 KOG0859 Synaptobrevin/VAMP-lik 67.2 7.1 0.00015 38.6 4.1 46 167-214 97-142 (217)
16 PF07889 DUF1664: Protein of u 67.0 71 0.0015 29.5 10.3 62 166-237 19-80 (126)
17 KOG4433 Tweety transmembrane/c 63.8 2.5E+02 0.0055 31.6 15.4 20 124-143 55-74 (526)
18 PF04156 IncA: IncA protein; 56.0 74 0.0016 30.4 9.0 30 284-313 32-61 (191)
19 COG0598 CorA Mg2+ and Co2+ tra 54.2 84 0.0018 33.0 9.7 28 255-285 257-284 (322)
20 PF02439 Adeno_E3_CR2: Adenovi 53.0 11 0.00024 27.6 2.0 21 124-144 15-36 (38)
21 PRK09546 zntB zinc transporter 51.4 1.5E+02 0.0032 31.0 11.0 16 262-277 266-281 (324)
22 PF14235 DUF4337: Domain of un 51.0 2.3E+02 0.0049 27.0 15.5 21 227-247 78-98 (157)
23 PF15099 PIRT: Phosphoinositid 49.9 12 0.00025 34.6 2.1 31 501-531 82-115 (129)
24 PHA03029 hypothetical protein; 49.4 1.4E+02 0.003 25.3 8.1 23 259-281 7-29 (92)
25 PRK01919 tatB sec-independent 49.4 95 0.0021 30.1 8.2 74 165-255 13-87 (169)
26 PF11169 DUF2956: Protein of u 46.2 19 0.00041 32.0 2.8 19 294-312 84-102 (103)
27 PF10854 DUF2649: Protein of u 45.7 32 0.0007 27.8 3.7 32 92-125 28-59 (67)
28 KOG2348 Urea transporter [Amin 44.6 41 0.00089 37.6 5.6 31 282-312 576-606 (667)
29 PF06749 DUF1218: Protein of u 44.4 40 0.00086 29.3 4.6 14 163-176 48-61 (97)
30 PHA00094 VI minor coat protein 43.8 63 0.0014 29.2 5.7 47 321-368 63-109 (112)
31 KOG3202 SNARE protein TLG1/Syn 42.7 86 0.0019 32.0 7.2 56 198-257 153-208 (235)
32 PF06084 Cytomega_TRL10: Cytom 42.5 11 0.00025 34.1 0.9 32 498-529 57-88 (150)
33 PF14979 TMEM52: Transmembrane 42.5 19 0.0004 34.0 2.3 8 132-139 41-48 (154)
34 PTZ00201 amastin surface glyco 40.9 92 0.002 30.8 7.0 30 90-119 52-86 (192)
35 TIGR03141 cytochro_ccmD heme e 40.0 29 0.00062 26.1 2.6 35 495-530 3-37 (45)
36 COG2177 FtsX Cell division pro 39.0 3.6E+02 0.0078 28.3 11.4 63 247-309 154-238 (297)
37 PF03172 Sp100: Sp100 domain; 36.9 14 0.0003 32.9 0.5 57 456-512 15-71 (103)
38 COG4768 Uncharacterized protei 36.5 2.6E+02 0.0057 26.2 8.7 26 224-249 82-107 (139)
39 PHA03189 UL14 tegument protein 36.1 30 0.00065 36.5 2.8 33 99-137 286-318 (348)
40 PF07344 Amastin: Amastin surf 35.3 3.1E+02 0.0066 25.7 9.4 35 283-322 91-125 (155)
41 PF04341 DUF485: Protein of un 35.0 2.3E+02 0.005 24.3 7.8 39 278-316 38-79 (91)
42 PF04995 CcmD: Heme exporter p 34.4 59 0.0013 24.4 3.5 33 496-529 3-35 (46)
43 PF14023 DUF4239: Protein of u 33.9 4.4E+02 0.0096 25.5 12.0 15 314-328 192-206 (209)
44 PF07662 Nucleos_tra2_C: Na+ d 33.1 2.7E+02 0.0058 28.0 8.9 53 253-306 49-108 (210)
45 PRK11085 magnesium/nickel/coba 33.0 6.1E+02 0.013 26.8 12.6 16 262-277 258-273 (316)
46 COG4768 Uncharacterized protei 32.0 1.8E+02 0.0039 27.2 6.9 7 181-187 29-35 (139)
47 KOG3882 Tetraspanin family int 31.6 1.1E+02 0.0025 30.1 6.1 40 259-298 52-91 (237)
48 PF12732 YtxH: YtxH-like prote 31.4 2.1E+02 0.0046 23.3 6.7 38 162-202 8-45 (74)
49 PF10267 Tmemb_cc2: Predicted 31.3 4.7E+02 0.01 28.8 11.1 15 290-304 375-389 (395)
50 KOG4050 Glutamate transporter 31.2 3.5E+02 0.0075 26.3 8.8 144 71-239 25-185 (188)
51 PF14163 SieB: Superinfection 31.0 52 0.0011 30.6 3.4 27 493-520 29-55 (151)
52 PF02203 TarH: Tar ligand bind 30.7 1.1E+02 0.0023 28.1 5.5 35 157-191 16-50 (171)
53 COG4987 CydC ABC-type transpor 30.4 8.9E+02 0.019 27.9 13.2 57 276-332 149-216 (573)
54 KOG4117 Heat shock factor bind 30.4 1E+02 0.0023 25.2 4.5 32 224-255 22-53 (73)
55 PTZ00443 Thioredoxin domain-co 29.8 76 0.0016 31.9 4.5 31 107-138 173-204 (224)
56 COG3162 Predicted membrane pro 29.4 2.8E+02 0.006 24.8 7.2 28 289-316 60-87 (102)
57 PF03908 Sec20: Sec20; InterP 29.2 3.6E+02 0.0078 22.9 10.4 21 189-209 21-41 (92)
58 PRK10404 hypothetical protein; 28.4 4E+02 0.0087 23.5 8.3 22 226-247 46-67 (101)
59 PF07077 DUF1345: Protein of u 28.4 3.1E+02 0.0067 26.6 8.3 31 290-320 82-112 (180)
60 PF06103 DUF948: Bacterial pro 28.4 2.6E+02 0.0056 23.5 7.0 6 157-162 8-13 (90)
61 PF11887 DUF3407: Protein of u 27.7 4.2E+02 0.0091 27.2 9.6 34 168-201 23-56 (267)
62 PF11239 DUF3040: Protein of u 27.6 2.1E+02 0.0046 23.9 6.2 28 220-247 4-31 (82)
63 COG5336 Uncharacterized protei 27.5 4.7E+02 0.01 23.8 9.3 50 249-299 36-87 (116)
64 PF13994 PgaD: PgaD-like prote 27.5 65 0.0014 29.7 3.4 25 506-530 69-93 (138)
65 PF10873 DUF2668: Protein of u 26.7 29 0.00064 32.7 0.9 20 100-119 52-72 (155)
66 PHA00646 hypothetical protein 26.1 68 0.0015 26.0 2.7 29 93-123 27-55 (65)
67 PF10812 DUF2561: Protein of u 25.9 1.6E+02 0.0036 29.3 5.8 60 106-171 23-84 (207)
68 PF14979 TMEM52: Transmembrane 25.9 82 0.0018 29.9 3.6 32 487-518 7-38 (154)
69 PF02038 ATP1G1_PLM_MAT8: ATP1 25.3 1E+02 0.0022 24.1 3.4 24 102-129 11-34 (50)
70 PF15330 SIT: SHP2-interacting 25.2 72 0.0016 28.5 3.1 33 501-533 1-33 (107)
71 PF11884 DUF3404: Domain of un 25.2 72 0.0016 33.0 3.4 43 487-529 218-260 (262)
72 PF01102 Glycophorin_A: Glycop 24.4 49 0.0011 30.4 1.9 30 109-142 65-94 (122)
73 PF12729 4HB_MCP_1: Four helix 23.9 2.3E+02 0.0051 25.2 6.3 19 166-184 22-40 (181)
74 PF15345 TMEM51: Transmembrane 23.8 30 0.00064 35.1 0.4 31 501-531 59-89 (233)
75 KOG2662 Magnesium transporters 23.0 6.6E+02 0.014 27.8 10.2 22 264-285 350-371 (414)
76 KOG3462 Predicted membrane pro 22.9 1.6E+02 0.0034 26.0 4.5 29 276-307 39-67 (105)
77 PF03904 DUF334: Domain of unk 22.7 8.3E+02 0.018 24.9 14.1 26 252-277 143-168 (230)
78 PF03623 Focal_AT: Focal adhes 22.5 3.1E+02 0.0066 25.9 6.7 51 195-246 37-89 (139)
79 PRK11677 hypothetical protein; 22.5 4.2E+02 0.0092 24.7 7.6 20 157-176 8-27 (134)
80 COG5325 t-SNARE complex subuni 22.2 3.6E+02 0.0079 28.2 7.8 18 259-276 259-276 (283)
81 PF06679 DUF1180: Protein of u 21.8 1E+02 0.0022 29.7 3.6 21 504-524 101-121 (163)
82 PF01544 CorA: CorA-like Mg2+ 21.8 1.6E+02 0.0035 29.3 5.3 18 265-285 239-256 (292)
83 PF00558 Vpu: Vpu protein; In 21.1 1.1E+02 0.0023 26.3 3.1 19 502-520 7-25 (81)
84 PF07344 Amastin: Amastin surf 20.7 4.8E+02 0.01 24.4 7.9 13 107-119 62-74 (155)
85 KOG3882 Tetraspanin family int 20.1 1.8E+02 0.004 28.6 5.2 36 147-182 80-115 (237)
No 1
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=100.00 E-value=6.1e-43 Score=370.86 Aligned_cols=369 Identities=19% Similarity=0.271 Sum_probs=267.5
Q ss_pred cccCCCCccCccccccCcccCCchhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccCC---CCcCCchhHHHH
Q 009383 76 KRTQRKDPIDNFHKYKGGWNISNKHYWASVGFTAAPFFIIAGIWFVVFGLSLCFMCLHYCCCRRE---PYGYSRTCYALS 152 (536)
Q Consensus 76 ~rt~R~Dpl~~fk~Y~gG~ni~n~hY~aSv~ftg~pg~via~lwfl~fgl~lL~~~~c~CCc~r~---~~~ys~~~~~~s 152 (536)
.+-+|-|- .|++.++.|||+|+|||||++|+|+ +|++||+++|++++++++|+|||||+ +++|+++|+.|+
T Consensus 12 h~lPh~n~--~f~~v~~~F~p~~~~Y~~Sv~~~a~----iaavwlil~ll~ll~~~~~~CCcr~~~~~~k~~s~~c~~~s 85 (418)
T cd07912 12 HSLPHLNF--TFHRVNSTFNPEDEIYQQSLLILAS----IPAACLILSLLFLLVYLITRCCDRKPTEERPRHSICCLKWS 85 (418)
T ss_pred HhCCCCCc--eEEecCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccHHHHH
Confidence 45678888 8999999999999999999999996 89999999999999999999999887 788999999999
Q ss_pred HHHHHHHHHHHHHHhheeeccccccccchhhhHHHHHhhhhHHhHhHHhHHHHHHHhhhcCcccccc-------Ccchhh
Q 009383 153 LILLVFFTISAIVGCIVLYTGQGKFHSSTLDTLNYVVKQAHITSESLQNVSDYLAAAKTIGVNSVTL-------APDVQS 225 (536)
Q Consensus 153 lillilft~~aI~g~~vl~~Gn~~fh~~~~~~l~yvv~~an~tv~~l~nVt~~l~~ak~~~v~~~~l-------p~d~~~ 225 (536)
++++.++++++|++ +|+||+|||+++.++.+++ +++|+|+++++|++++++++-+.++++.+. +...+.
T Consensus 86 LiiltL~~~aaIi~---~f~GN~~~h~gV~~t~~si-~~an~tv~~l~nqv~~l~~al~~t~~~~L~~L~~il~~~~~~~ 161 (418)
T cd07912 86 LVIATLLCCAAIGV---GLYGNDETHDGVVQLTYSL-RNANHTVAGIDNQTSDTEASLNVTVEPQLTNLEDIFDARVNKT 161 (418)
T ss_pred HHHHHHHHHHHHHH---HhhccHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHhCCCcchh
Confidence 99998888775554 9999999999999999997 999999999999988887654444432111 111225
Q ss_pred hHHHHHHHHHhhHHHHHHHHh---------hhHHHHHHhH---hhHHH----HHHHHHHHHHHHHHHHHHHHHhchhHHH
Q 009383 226 NIDKIDRKINSSATTLSYQTK---------KNSKDIKDAL---DSVGL----ALIIVAAVMLFLAFLGFLFSVFGLQCLV 289 (536)
Q Consensus 226 ~i~~~~~~Lns~a~~i~~k~~---------~n~~~I~~~l---~~vrl----~liiva~vmLlL~~lGlv~si~g~r~ll 289 (536)
+..++.++++++++++.+++. .|.++|.+.. |.+|| +++++..++|+++++|++. +.||.+
T Consensus 162 ~~~~~~~~~q~~~~n~~~~~~~~~~~~~~~~~l~~i~~~~~~~E~~Rw~~~l~lL~~~lviC~~~l~gl~r---~Sr~~l 238 (418)
T cd07912 162 DYLQIVQGLQQMATNAAQQLTGIPFWSLVGVSLTKLADQVSLYESYRWLAYLGLLSLLLVICLVLLVGLAR---HSRCLL 238 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchHH
Confidence 566777888888888775543 4555665443 34564 4455555555655555554 889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhCCCCCCCCCccccCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 009383 290 YFLVILGWILVAGTFILCGIFLLLHNVVADTCVSMDEWVKNPTAHTALDDILPCVDNATAQETLKQTKTVTNQLVSVVDR 369 (536)
Q Consensus 290 ~~lvilgwilv~~tWil~Gv~l~l~~~vsDtCvAmdeyv~nPt~ntaL~~iLPCvd~~ta~~~l~~skev~~~lv~~vN~ 369 (536)
++++++|.+.++++|+++|+|++++++++|+|++||+|+.+.++.+ ++. +.+
T Consensus 239 i~~s~~g~l~l~~~W~~~~~~l~~~v~~sDfC~~pd~yi~~~~~~~-~~~-------------------------di~-- 290 (418)
T cd07912 239 IVFSVCGLFALIISWLSLGLYLASAVALSDFCVDPDDYVRNQTPSG-LSS-------------------------DIL-- 290 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHhccccc-cch-------------------------HHH--
Confidence 9999999999999999999999999999999999999999887422 100 001
Q ss_pred HHHHhhcccCCCCCccccccCCCCCCccccCCCCCCCCcccCCCCcccccchhhhhccceecCCCCCcccCCCccChhhH
Q 009383 370 IIINVVNRNFLPQAGIVYYNQSGPLLPVLCNPFNSDLTNRQCVASEVDFSNATEVWKNYICQPSSSGICKTPGRLTPTLH 449 (536)
Q Consensus 370 ~is~vsn~n~~~~~~~~y~nqsgp~~p~lCnPf~~~~~~~~C~~gev~~~~a~~v~~~~~C~~~~~~~C~t~gr~tp~~y 449 (536)
-||.+..|..+ |||...++.. ...+.|..+.++...=.. -..+.+. - +..
T Consensus 291 ----------------~yy~~C~~~~~---npF~~~l~~~-----~~~l~~~~~~~~~~~~~~--~~~~~~~---~-~~l 340 (418)
T cd07912 291 ----------------QYYLTCEPSTT---NPFQQRLTES-----QRALTNMQSQVQGLLREA--VFEFPTA---E-DNL 340 (418)
T ss_pred ----------------HHHhcCCCCCC---CcchHhhHHH-----HHHHHHHHHHHHHHHHHh--cccCCcc---c-chH
Confidence 15666655544 7777666432 223434433333222000 0011111 1 113
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCchhHHHHHhhcccCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009383 450 NQMASAVNVSYALYRYGPFLVNLQDCTFVRDTFTDISRDHCPGLQRHSKWIYIGLFMVSAAVMLSLIFWVI 520 (536)
Q Consensus 450 ~q~~a~~n~~~~L~~~~P~l~~L~~C~fVr~~F~~I~~~~C~~l~~~~~~v~~gl~~~s~~~~l~~i~Wi~ 520 (536)
.+++.-.|++... .-.|+.++||.-+.+-+.+-...-|-+--.++-.+ .+..+-+|.+++++.|+.
T Consensus 341 ~~~~~~ln~~e~~---l~~l~a~ldCr~~h~~Y~~a~~g~C~~gl~Gl~~~--~l~s~~~a~~~~~lv~~~ 406 (418)
T cd07912 341 LSLQGDLNSTEIN---LHQLTALLDCRGLHKDYVEALRGLCYDGLEGLLYL--LLFSLLAALLFTILVCVD 406 (418)
T ss_pred HHHHHHHHHHHHH---HHHHHhhcchHHHHHHHHHHHHccccchHHHHHHH--HHHHHHHHHHHHHHHHhc
Confidence 3455555555444 45678899999999999999999998777665444 556666788888888743
No 2
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=100.00 E-value=1.5e-36 Score=323.40 Aligned_cols=361 Identities=20% Similarity=0.285 Sum_probs=246.1
Q ss_pred cccccCcccCCchhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCc---hhHHHHHHHHHHHHHHH
Q 009383 87 FHKYKGGWNISNKHYWASVGFTAAPFFIIAGIWFVVFGLSLCFMCLHYCCCRREPYGYSR---TCYALSLILLVFFTISA 163 (536)
Q Consensus 87 fk~Y~gG~ni~n~hY~aSv~ftg~pg~via~lwfl~fgl~lL~~~~c~CCc~r~~~~ys~---~~~~~slillilft~~a 163 (536)
|+..++.|+|+|+.|+||+++.| .++++|+++..+++++|++|+|||||++++.++ +|.+|+++++.++++
T Consensus 1 ~~~~~~~F~p~~~~Y~qsL~~la----~v~~~~l~l~Ll~ll~yl~~~CC~r~~~~~~~~~~~~c~~~~~~ia~lvc~-- 74 (406)
T PF04906_consen 1 FQPVSSTFNPQDEEYQQSLLILA----SVAAACLALSLLFLLIYLICRCCCRRPREEKSSRRCCCLTWSLVIATLVCC-- 74 (406)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCCcchHHHHHHHHHHHH--
Confidence 67889999999999999999999 467778766677788899999999886555443 499999887765555
Q ss_pred HHHhheeeccccccccchhhhHHHHHhhhhHHhHhHHh-HHHHHHHhhhcCccccccCc----chhhhHHHHHHHHHhhH
Q 009383 164 IVGCIVLYTGQGKFHSSTLDTLNYVVKQAHITSESLQN-VSDYLAAAKTIGVNSVTLAP----DVQSNIDKIDRKINSSA 238 (536)
Q Consensus 164 I~g~~vl~~Gn~~fh~~~~~~l~yvv~~an~tv~~l~n-Vt~~l~~ak~~~v~~~~lp~----d~~~~i~~~~~~Lns~a 238 (536)
+|+++|||||+++|+|+ +.+.|.++++|+++.++++ ++++.+.++. .+++++... +.++++.++.++++.++
T Consensus 75 -aaigvG~yGN~e~~~gv-~~~~~s~~~~n~t~~~i~~~v~~~~~~l~~-~v~~~l~~Le~~~~~~~~~~~~~~~~~~~~ 151 (406)
T PF04906_consen 75 -AAIGVGFYGNSETNDGV-YQLIYSLRNANHTLSGIDNLVSDTTEALNS-TVEQHLTRLEEIFAKRTDLLQALQFLQQQA 151 (406)
T ss_pred -HHHHcccccchhhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 46689999999999995 8888899999999999999 5666666663 343332211 22455667777777777
Q ss_pred HHHHHHHh---------hhHHHHHHhHhh---HHHHHH-HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Q 009383 239 TTLSYQTK---------KNSKDIKDALDS---VGLALI-IVAAVMLFLAFLGFLFSVFGLQCLVYFLVILGWILVAGTFI 305 (536)
Q Consensus 239 ~~i~~k~~---------~n~~~I~~~l~~---vrl~li-iva~vmLlL~~lGlv~si~g~r~ll~~lvilgwilv~~tWi 305 (536)
+++..++. .+...+.+.++. .||..+ .+..+++++++++++....+.||.++.+.++|++.++++|+
T Consensus 152 ~~v~~~l~~l~~~~~~~~~l~~~~~~~~~~E~yRw~~~~~lL~l~l~icl~~l~glar~Sk~~li~~~v~gll~lvisW~ 231 (406)
T PF04906_consen 152 ENVVQQLDELPFWRNVSLSLEQLAEQVSFYEYYRWLAYLGLLILDLVICLLGLLGLARQSKCLLIVFSVLGLLALVISWI 231 (406)
T ss_pred HHHHHHHhcCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEEEeeeccHHHHHHHHH
Confidence 77766655 344455544443 465432 22233334444443333458899999999999999999999
Q ss_pred HHHHHHHHhhhccccccchhhhhhCCCCCCCCCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcc
Q 009383 306 LCGIFLLLHNVVADTCVSMDEWVKNPTAHTALDDILPCVDNATAQETLKQTKTVTNQLVSVVDRIIINVVNRNFLPQAGI 385 (536)
Q Consensus 306 l~Gv~l~l~~~vsDtCvAmdeyv~nPt~ntaL~~iLPCvd~~ta~~~l~~skev~~~lv~~vN~~is~vsn~n~~~~~~~ 385 (536)
+.|+++++++++||+|++||+|+.|-+.+.... ++++
T Consensus 232 ~~g~~la~aV~~SDFC~~Pd~~i~~~~~~~~~~--------------------------di~~----------------- 268 (406)
T PF04906_consen 232 SLGLELAAAVGLSDFCVDPDTYILNQTQNETSA--------------------------DILQ----------------- 268 (406)
T ss_pred HHHHHHHhccchhhhccCHHHHHHHhcccccch--------------------------hHHH-----------------
Confidence 999999999999999999999999987655211 1111
Q ss_pred ccccCCCCCCccccCCCCCCCCcccCCCCcccccchhhhhccceecCCCCCcccCCCccChhhHHHHHHHHHHHHHHHhh
Q 009383 386 VYYNQSGPLLPVLCNPFNSDLTNRQCVASEVDFSNATEVWKNYICQPSSSGICKTPGRLTPTLHNQMASAVNVSYALYRY 465 (536)
Q Consensus 386 ~y~nqsgp~~p~lCnPf~~~~~~~~C~~gev~~~~a~~v~~~~~C~~~~~~~C~t~gr~tp~~y~q~~a~~n~~~~L~~~ 465 (536)
||...+|..+ |||.+.++.-+ -.+.++...+....-... ..+-+.+ ..-.+++...|++ ..-
T Consensus 269 -YYl~C~~~~~---nPFqq~l~~~~-----~al~~~q~~~~~L~~~a~--~~fp~~~----~~l~~i~~~Ln~~---e~~ 330 (406)
T PF04906_consen 269 -YYLTCSQSVS---NPFQQRLTSSQ-----RALSNMQSQVQGLLREAV--PLFPTAQ----EPLLAIQEDLNST---ERS 330 (406)
T ss_pred -HhhcCCCCCC---CchHHHHHHHH-----HHHHHHHHHHHHHHHHHH--hhCCCcc----chHHHHHHHHHHH---HHH
Confidence 5555555544 77765543221 133344444433331110 0000000 1123344444444 344
Q ss_pred cccccccCCchhHHHHHhhcccCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 009383 466 GPFLVNLQDCTFVRDTFTDISRDHCPGLQRHSKWIYIGLFMVSAAVMLSLIFWV 519 (536)
Q Consensus 466 ~P~l~~L~~C~fVr~~F~~I~~~~C~~l~~~~~~v~~gl~~~s~~~~l~~i~Wi 519 (536)
...++.++||.-+++.|.+..+.-|.+--.++-.++. ..+-+|.++++++|+
T Consensus 331 l~~l~alldCr~lh~dY~~al~g~C~dg~eGl~~l~l--~sll~al~f~~~v~~ 382 (406)
T PF04906_consen 331 LHQLTALLDCRGLHKDYVDALRGLCYDGLEGLLYLLL--FSLLAALLFSILVCV 382 (406)
T ss_pred HHHHHhhcccccHHHHHHHHHHhhccchHhHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999998877765 334455555556553
No 3
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=99.98 E-value=4.8e-30 Score=269.27 Aligned_cols=361 Identities=18% Similarity=0.244 Sum_probs=242.3
Q ss_pred ccCCCCccCccccccCcccCCchhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccCC---CCcCCchhHHHHH
Q 009383 77 RTQRKDPIDNFHKYKGGWNISNKHYWASVGFTAAPFFIIAGIWFVVFGLSLCFMCLHYCCCRRE---PYGYSRTCYALSL 153 (536)
Q Consensus 77 rt~R~Dpl~~fk~Y~gG~ni~n~hY~aSv~ftg~pg~via~lwfl~fgl~lL~~~~c~CCc~r~---~~~ys~~~~~~sl 153 (536)
+-+|-|- .|+.-+..|+++|++|+||+++.|..+.++.++. .+++++|++|.|||||+ +..+..+|..|++
T Consensus 17 ~lP~~~~--~~~~tns~F~pe~~~Y~QaL~lla~l~aa~l~l~----Ll~ll~yli~~cC~Rr~~~~~~~~~~~c~s~~l 90 (526)
T KOG4433|consen 17 VLPHLNF--KLHPTNSVFRPEDSEYQQALLLLAALAAACLGLS----LLFLLFYLICRCCCRRETTGRKRRRVRCLSWSL 90 (526)
T ss_pred cCCCCCc--eEeeccccCCCCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCccCCCCCCcceeeehH
Confidence 3457777 8888999999999999999999996554444444 55567778899999986 3445667999999
Q ss_pred HHHHHHHHHHHHHhheeeccccccccchhhhHHHHHhhhhHHhHhHHh-HHHHHHHhhhcCccccccCc----chhhhHH
Q 009383 154 ILLVFFTISAIVGCIVLYTGQGKFHSSTLDTLNYVVKQAHITSESLQN-VSDYLAAAKTIGVNSVTLAP----DVQSNID 228 (536)
Q Consensus 154 illilft~~aI~g~~vl~~Gn~~fh~~~~~~l~yvv~~an~tv~~l~n-Vt~~l~~ak~~~v~~~~lp~----d~~~~i~ 228 (536)
+++.++|+ +|+++|||||+++|+|+ .+..|..+++|+++.++++ ++++-+.+++ ..++..... ...+++.
T Consensus 91 ~I~tl~cc---a~igvg~ygN~e~~~G~-~q~~~Sl~~an~tv~ti~~qv~~~~~~l~~-~~~~~l~~~~~n~t~~~~l~ 165 (526)
T KOG4433|consen 91 IIATLMCC---AAIGVGFYGNSETSDGL-LQATYSLRHANHTVSTIDAQVSDTAEGLNN-TAEQLLETLEENLTARPELL 165 (526)
T ss_pred HHHHHHHH---HHHheeeecCccccchH-HHHHHhhhhhcchhhHHHHHHHHHHHHHHH-HHHHHhhhHHhhhhhHHHHH
Confidence 98855555 58899999999999995 8888999999999999999 5777777765 344333322 2256688
Q ss_pred HHHHHHHhhHHHHHHHHh---------hhHHHHHHhHhh---HHHHHHHH----HHHHHHHHHHHHHHHHhchhHHHHHH
Q 009383 229 KIDRKINSSATTLSYQTK---------KNSKDIKDALDS---VGLALIIV----AAVMLFLAFLGFLFSVFGLQCLVYFL 292 (536)
Q Consensus 229 ~~~~~Lns~a~~i~~k~~---------~n~~~I~~~l~~---vrl~liiv----a~vmLlL~~lGlv~si~g~r~ll~~l 292 (536)
++.+.++..++.+..+++ ....++.+..+. +||.-+++ ..|.|++.++|++. +.||+++.|
T Consensus 166 ~~l~~vq~~~~~a~~~l~~~~~~~~~~~sl~~l~~~~~~yE~~RW~~~v~lL~l~LvvC~v~vlglak---~Skc~li~f 242 (526)
T KOG4433|consen 166 QALRRVQGNAETAVGQLSGLPFWRMVAVSLEKLAEQVDFYESYRWLAYVLLLTLLLVVCLVLVLGLAK---RSKCLLIVF 242 (526)
T ss_pred HHHHHHHHHHHHHHHhhhcCcccccCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchhhhHH
Confidence 888888888888777665 345666665554 57654333 33333444444444 789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhCCCCCCCCCcccc----CCCchhhHHHHHHHHHHHHHHHHHHH
Q 009383 293 VILGWILVAGTFILCGIFLLLHNVVADTCVSMDEWVKNPTAHTALDDILP----CVDNATAQETLKQTKTVTNQLVSVVD 368 (536)
Q Consensus 293 vilgwilv~~tWil~Gv~l~l~~~vsDtCvAmdeyv~nPt~ntaL~~iLP----Cvd~~ta~~~l~~skev~~~lv~~vN 368 (536)
.++|.+.++++|.+.|++++.+++++|||++||+|+.|.+.+---.+++- |. ...+|+...+.+|.-.-+.+.=|
T Consensus 243 sv~Gll~lvisWl~~gl~la~sVa~sDFC~~Pd~y~~~~~~~~l~t~~~~~yl~c~-~t~~NpF~qrL~~sq~al~~~~~ 321 (526)
T KOG4433|consen 243 SVCGLLALVISWLSLGLELASSVALSDFCVDPDDYVLNMVEEYLSTDILLYYLACS-PTHSNPFQQRLTESQRALNNMQS 321 (526)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccChHHHHHHhhhcccchhHHhhhcccC-CCCCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998875441112221 22 23344444444333221111111
Q ss_pred HHHHHhhcccCCCCCccccccCCCCCCccccCCCCCCCCcccCCCCcccccchhhhhccceecCCCCCcccCCCccChhh
Q 009383 369 RIIINVVNRNFLPQAGIVYYNQSGPLLPVLCNPFNSDLTNRQCVASEVDFSNATEVWKNYICQPSSSGICKTPGRLTPTL 448 (536)
Q Consensus 369 ~~is~vsn~n~~~~~~~~y~nqsgp~~p~lCnPf~~~~~~~~C~~gev~~~~a~~v~~~~~C~~~~~~~C~t~gr~tp~~ 448 (536)
++- .... |- -|+.|+- ...
T Consensus 322 ~va----~l~r---------------~~---v~~f~~~---------------------------------------q~~ 340 (526)
T KOG4433|consen 322 QVA----GLLR---------------MA---VPLFPAA---------------------------------------QDP 340 (526)
T ss_pred HHH----HHHH---------------hh---hhccccc---------------------------------------cCc
Confidence 111 1000 00 0111100 011
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCchhHHHHHhhcccCCCccHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 009383 449 HNQMASAVNVSYALYRYGPFLVNLQDCTFVRDTFTDISRDHCPGLQRHSKWIYIGLFMVSAAVMLSLIFW 518 (536)
Q Consensus 449 y~q~~a~~n~~~~L~~~~P~l~~L~~C~fVr~~F~~I~~~~C~~l~~~~~~v~~gl~~~s~~~~l~~i~W 518 (536)
...|...-|++-.+++ .|..+.||--+.+-|.+-..+-|-+=-.+ ++|.++..+=.|++++++.|
T Consensus 341 L~Av~~dLn~te~nl~---qLtAlvdCr~lH~dy~~AlrGlC~~gl~G--L~~lml~s~L~a~~lsilv~ 405 (526)
T KOG4433|consen 341 LLAVQEDLNSTERNLH---QLTALVDCRSLHKDYVAALRGLCYDGLEG--LLYLMLFSFLTALALSILVC 405 (526)
T ss_pred HHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 2334444444444433 46779999999999999999999765444 34445555556677777764
No 4
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=98.43 E-value=7.4e-05 Score=87.19 Aligned_cols=61 Identities=23% Similarity=0.456 Sum_probs=37.3
Q ss_pred HHHHhhccccc--CC----CCcC---CchhHHHHHHHHHHHHHHHHHHhheeeccccccccchhhhHHHHHhh
Q 009383 128 CFMCLHYCCCR--RE----PYGY---SRTCYALSLILLVFFTISAIVGCIVLYTGQGKFHSSTLDTLNYVVKQ 191 (536)
Q Consensus 128 L~~~~c~CCc~--r~----~~~y---s~~~~~~slillilft~~aI~g~~vl~~Gn~~fh~~~~~~l~yvv~~ 191 (536)
+++|||+||.+ ++ .+++ .|.++.+ ++++++++.++|.+..|..|+..++++.++.+.+-+.
T Consensus 112 ~~fCcCRCc~~CGg~~~~~~~~~~~c~R~~l~~---~L~~~~~~il~g~i~aF~~n~~l~~~v~~~~~~~~~~ 181 (806)
T PF05478_consen 112 LCFCCCRCCGNCGGRMHQRDKKNDACRRGCLGI---LLLLLTLIILFGVICAFVANQQLSTGVDDTPNTVNST 181 (806)
T ss_pred HHHhccccCCCcCCccccccccccccchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 56777777633 21 1122 2334444 3445566666788899999999999987665554333
No 5
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=96.91 E-value=0.094 Score=57.11 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=5.6
Q ss_pred CCccccCCCc
Q 009383 337 LDDILPCVDN 346 (536)
Q Consensus 337 L~~iLPCvd~ 346 (536)
++..+.|...
T Consensus 290 ~~yy~~C~~~ 299 (418)
T cd07912 290 LQYYLTCEPS 299 (418)
T ss_pred HHHHhcCCCC
Confidence 5555666653
No 6
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=96.67 E-value=0.018 Score=66.24 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=61.9
Q ss_pred ChhhHHHHHHHHHHHHHHHhhc-ccccccCCchhHHHHHhhcccCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009383 445 TPTLHNQMASAVNVSYALYRYG-PFLVNLQDCTFVRDTFTDISRDHCPGLQRHSKWIYIGLFMVSAAVMLSLIFWVIYAR 523 (536)
Q Consensus 445 tp~~y~q~~a~~n~~~~L~~~~-P~l~~L~~C~fVr~~F~~I~~~~C~~l~~~~~~v~~gl~~~s~~~~l~~i~Wi~~~r 523 (536)
++...+++.. +.+|-+..+. |..|++.+|+=+..+..+-+.--|.=..+-.+--|.|++...+-+.+++++-..-..
T Consensus 737 ~~~~~~~~~~--~~~~YI~wv~~e~~e~V~sCqPls~~l~~~~~~lC~~~iDPlN~fW~~il~c~~lliP~li~a~~l~~ 814 (865)
T KOG4331|consen 737 PKPRLRRIKG--YISQYILWVQKEHLENVASCQPLSKILRENVVVLCGYIIDPLNLFWFCILFCTVLLIPSLIFAVKLPK 814 (865)
T ss_pred ChHHHHHHHh--hHHHHHHHHHHHHHhhccccccHHHHHHhhhHhhhhhccCCccccchHHHHHHHHHHhHHHHHHHhhH
Confidence 3344455554 3444444444 888999999999888888888889988899999999999999999999999765554
Q ss_pred cchhh
Q 009383 524 ERRHR 528 (536)
Q Consensus 524 ~~~~r 528 (536)
.-||+
T Consensus 815 ~y~rm 819 (865)
T KOG4331|consen 815 LYRRM 819 (865)
T ss_pred hhhhh
Confidence 44433
No 7
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=96.27 E-value=0.2 Score=54.47 Aligned_cols=182 Identities=14% Similarity=0.101 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHhhccccc-CCC--Cc-CCchhHHHHHHHHHHHHHHHHHHhheeeccccccccchhhh---HHHH
Q 009383 116 AGIWFVVFGLSLCFMCLHYCCCR-REP--YG-YSRTCYALSLILLVFFTISAIVGCIVLYTGQGKFHSSTLDT---LNYV 188 (536)
Q Consensus 116 a~lwfl~fgl~lL~~~~c~CCc~-r~~--~~-ys~~~~~~slillilft~~aI~g~~vl~~Gn~~fh~~~~~~---l~yv 188 (536)
.++.+ +|.+++++..||++..+ +++ +. ..+.+..+.-++......++..|=.=.-.|-.++..++.++ +.-+
T Consensus 30 l~l~L-l~ll~yl~~~CC~r~~~~~~~~~~~~c~~~~~~ia~lvc~aaigvG~yGN~e~~~gv~~~~~s~~~~n~t~~~i 108 (406)
T PF04906_consen 30 LALSL-LFLLIYLICRCCCRRPREEKSSRRCCCLTWSLVIATLVCCAAIGVGFYGNSETNDGVYQLIYSLRNANHTLSGI 108 (406)
T ss_pred HHHHH-HHHHHHHHHHhhCCCCCccccccCCcchHHHHHHHHHHHHHHHHcccccchhhhccHHHHHHHHHHHHHHHHHH
Confidence 44443 35666666555555554 222 22 33444444444444444444555444455655555554444 4444
Q ss_pred HhhhhHHhHhHHh-HHHHHHHhhhcCccccccCcchhhhHHHHHH---HHHhhHHHH---------HHHHhhhHHHHHHh
Q 009383 189 VKQAHITSESLQN-VSDYLAAAKTIGVNSVTLAPDVQSNIDKIDR---KINSSATTL---------SYQTKKNSKDIKDA 255 (536)
Q Consensus 189 v~~an~tv~~l~n-Vt~~l~~ak~~~v~~~~lp~d~~~~i~~~~~---~Lns~a~~i---------~~k~~~n~~~I~~~ 255 (536)
-++.+++.+++.. +...++.++++ ...|.|....+.++++ .+..+++++ -+++.+..+.++..
T Consensus 109 ~~~v~~~~~~l~~~v~~~l~~Le~~----~~~~~~~~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~l~~~~~~~~~~E~y 184 (406)
T PF04906_consen 109 DNLVSDTTEALNSTVEQHLTRLEEI----FAKRTDLLQALQFLQQQAENVVQQLDELPFWRNVSLSLEQLAEQVSFYEYY 184 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----hcccccHHHHHHHHHHHHHHHHHHHhcCcccccCCCCHHHHHHHHHHHHHH
Confidence 5666666666654 56566665543 2334444333333222 222222222 12444456666777
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHH
Q 009383 256 LDSVGLALIIVAAVMLFLAFLGFLFSV----FGLQCLVYFLVILGWILVAG 302 (536)
Q Consensus 256 l~~vrl~liiva~vmLlL~~lGlv~si----~g~r~ll~~lvilgwilv~~ 302 (536)
....+++++++..+++++.++|++.-. ...-.+-.+.+++.|++..+
T Consensus 185 Rw~~~~~lL~l~l~icl~~l~glar~Sk~~li~~~v~gll~lvisW~~~g~ 235 (406)
T PF04906_consen 185 RWLAYLGLLILDLVICLLGLLGLARQSKCLLIVFSVLGLLALVISWISLGL 235 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcceEEEeeeccHHHHHHHHHHHHH
Confidence 777889999999999999999988732 22223334566677887654
No 8
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=93.80 E-value=1.3 Score=52.23 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=45.7
Q ss_pred ccccCCchhHHHHHhhcccCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009383 469 LVNLQDCTFVRDTFTDISRDHCPGLQRHSKWIYIGLFMVSAAVMLSLIFWVIYA 522 (536)
Q Consensus 469 l~~L~~C~fVr~~F~~I~~~~C~~l~~~~~~v~~gl~~~s~~~~l~~i~Wi~~~ 522 (536)
-++...|.=+.+++...+.--|.-+...++-.|.|++.-+.-+++++++-+.-+
T Consensus 739 ~~~vg~C~Pl~~~~d~~~~~~C~~ivdp~N~fWf~l~~c~~~liP~ii~avkL~ 792 (806)
T PF05478_consen 739 TNDVGRCQPLANIYDSAVVILCSRIVDPINGFWFGLGWCTLFLIPSIIFAVKLA 792 (806)
T ss_pred HccCcCCccHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999888888999999999999999998888888888864433
No 9
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=89.06 E-value=2.1 Score=36.24 Aligned_cols=20 Identities=5% Similarity=0.250 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHhhHHHHHHH
Q 009383 225 SNIDKIDRKINSSATTLSYQ 244 (536)
Q Consensus 225 ~~i~~~~~~Lns~a~~i~~k 244 (536)
+.+++-.++|...|....++
T Consensus 34 ~~L~~kt~~L~~~a~~F~k~ 53 (89)
T PF00957_consen 34 EELEDKTEELSDNAKQFKKN 53 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHH
Confidence 33444445666666665554
No 10
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.01 E-value=19 Score=32.66 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=21.3
Q ss_pred CccccccCcchhhhHHHHHHHHHhhHHHHHHHH
Q 009383 213 GVNSVTLAPDVQSNIDKIDRKINSSATTLSYQT 245 (536)
Q Consensus 213 ~v~~~~lp~d~~~~i~~~~~~Lns~a~~i~~k~ 245 (536)
.|++++.+.+-.+.|++-.++|+.+|+...+.+
T Consensus 48 NV~KVlER~ekL~~L~drad~L~~~as~F~~~A 80 (116)
T KOG0860|consen 48 NVEKVLERGEKLDELDDRADQLQAGASQFEKTA 80 (116)
T ss_pred hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445566777788998888887663
No 11
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=77.95 E-value=29 Score=29.28 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=5.2
Q ss_pred HHHhhHHHHHHH
Q 009383 233 KINSSATTLSYQ 244 (536)
Q Consensus 233 ~Lns~a~~i~~k 244 (536)
.|...++++...
T Consensus 35 ~L~~kt~~L~~~ 46 (89)
T PF00957_consen 35 ELEDKTEELSDN 46 (89)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 12
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=71.55 E-value=9.2 Score=44.86 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=54.6
Q ss_pred chhhHHHHhhhhhHHH--HHHHHHHHHHHHHHHHHHhhcccccCCCCc------CCchhHHHHHHHHHHHHHHHHHHhhe
Q 009383 98 NKHYWASVGFTAAPFF--IIAGIWFVVFGLSLCFMCLHYCCCRREPYG------YSRTCYALSLILLVFFTISAIVGCIV 169 (536)
Q Consensus 98 n~hY~aSv~ftg~pg~--via~lwfl~fgl~lL~~~~c~CCc~r~~~~------ys~~~~~~slillilft~~aI~g~~v 169 (536)
+|.||+=+.|-+-... +++++..+.+-.+.+++|||+|||++.++- +..+-+.-+-+.+++.++.-++|++.
T Consensus 93 ek~~~~lv~~~~g~lv~sV~~v~~iil~p~~~~~yccc~C~~rc~~r~~~~~~~~~a~kR~~~~l~Llvl~i~~ligv~~ 172 (865)
T KOG4331|consen 93 EKGDILLVIYEAGMLVCSVILVLYIILKPSEGLCYCCCRCCRRCGGRIKSALKQDDACKRPCCELELLVLAIELLIGVFR 172 (865)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhheeeeHhhhcCCCCchhccCcHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4555666555442221 223333233333446677777766542221 22233334445555667777789999
Q ss_pred eeccccccccchhhhHHHHHhhhhHH
Q 009383 170 LYTGQGKFHSSTLDTLNYVVKQAHIT 195 (536)
Q Consensus 170 l~~Gn~~fh~~~~~~l~yvv~~an~t 195 (536)
+|..|...+.+..+..+..=+.++++
T Consensus 173 ~fvtnk~v~~~i~~s~~~m~~~~~dl 198 (865)
T KOG4331|consen 173 AFVTNKPVMLRIKNSLEDMRRLATDL 198 (865)
T ss_pred HHHHhhHHHHhhhccHHHHHHHHHHH
Confidence 99999999988876665443333333
No 13
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=71.16 E-value=72 Score=28.07 Aligned_cols=59 Identities=10% Similarity=0.319 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHh---hhHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009383 226 NIDKIDRKINSSATTLSYQTK---KNSKDIKDALDSVGLALIIVAAVMLFLAFLGFLFSVFG 284 (536)
Q Consensus 226 ~i~~~~~~Lns~a~~i~~k~~---~n~~~I~~~l~~vrl~liiva~vmLlL~~lGlv~si~g 284 (536)
+.+.+.++|+...|.+.+.=+ +|.++-+|-+..+.+++..+.+.++...+++++-.+||
T Consensus 36 ~qe~v~~kld~tlD~i~reRe~dee~k~~n~Knir~~KmwilGlvgTi~gsliia~lr~~fg 97 (98)
T PF11166_consen 36 DQELVNQKLDRTLDEINREREEDEENKKKNDKNIRDIKMWILGLVGTIFGSLIIALLRTIFG 97 (98)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345555666666666644211 34444455455556555544455555555555555554
No 14
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=69.19 E-value=57 Score=33.68 Aligned_cols=20 Identities=20% Similarity=0.501 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009383 261 LALIIVAAVMLFLAFLGFLF 280 (536)
Q Consensus 261 l~liiva~vmLlL~~lGlv~ 280 (536)
..+-+++++++.+.+++-++
T Consensus 259 k~LTvvt~IflP~t~IaGiy 278 (318)
T TIGR00383 259 KILTVVSTIFIPLTFIAGIY 278 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666665444
No 15
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.20 E-value=7.1 Score=38.56 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=36.9
Q ss_pred hheeeccccccccchhhhHHHHHhhhhHHhHhHHhHHHHHHHhhhcCc
Q 009383 167 CIVLYTGQGKFHSSTLDTLNYVVKQAHITSESLQNVSDYLAAAKTIGV 214 (536)
Q Consensus 167 ~~vl~~Gn~~fh~~~~~~l~yvv~~an~tv~~l~nVt~~l~~ak~~~v 214 (536)
.++.|..|+||.+-..+.++|-.++-+ ++++..+-+.++.+|.+.+
T Consensus 97 ta~AysmN~EFs~vL~qqm~y~s~~p~--id~lskvkaqv~evk~vM~ 142 (217)
T KOG0859|consen 97 TAVAYSMNKEFSSVLKQQMQYCSEHPE--ISKLAKVKAQVTEVKGVMM 142 (217)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHcCcc--hhHHHHHHHHHHHHHHHHH
Confidence 345589999999999999999877766 8888888788888776544
No 16
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=66.99 E-value=71 Score=29.49 Aligned_cols=62 Identities=21% Similarity=0.286 Sum_probs=42.2
Q ss_pred HhheeeccccccccchhhhHHHHHhhhhHHhHhHHhHHHHHHHhhhcCccccccCcchhhhHHHHHHHHHhh
Q 009383 166 GCIVLYTGQGKFHSSTLDTLNYVVKQAHITSESLQNVSDYLAAAKTIGVNSVTLAPDVQSNIDKIDRKINSS 237 (536)
Q Consensus 166 g~~vl~~Gn~~fh~~~~~~l~yvv~~an~tv~~l~nVt~~l~~ak~~~v~~~~lp~d~~~~i~~~~~~Lns~ 237 (536)
|.+=.-+--=+|.|-+.-|..-.-+..+.....|++|+++++.+|.- ..+.|+.+..+|+..
T Consensus 19 GY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkh----------LsqRId~vd~klDe~ 80 (126)
T PF07889_consen 19 GYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKH----------LSQRIDRVDDKLDEQ 80 (126)
T ss_pred HheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhHHHH
Confidence 43333344457777776677777777888889999999999999972 245556555555444
No 17
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=63.77 E-value=2.5e+02 Score=31.56 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=9.9
Q ss_pred HHHHHHHHhhcccccCCCCc
Q 009383 124 GLSLCFMCLHYCCCRREPYG 143 (536)
Q Consensus 124 gl~lL~~~~c~CCc~r~~~~ 143 (536)
++.|++..+-.-|.+..+++
T Consensus 55 ~l~Ll~ll~yli~~cC~Rr~ 74 (526)
T KOG4433|consen 55 GLSLLFLLFYLICRCCCRRE 74 (526)
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 44445554544444445555
No 18
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=55.99 E-value=74 Score=30.42 Aligned_cols=30 Identities=23% Similarity=0.497 Sum_probs=15.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009383 284 GLQCLVYFLVILGWILVAGTFILCGIFLLL 313 (536)
Q Consensus 284 g~r~ll~~lvilgwilv~~tWil~Gv~l~l 313 (536)
++-.++..++..+++++-+.-+..|++.+.
T Consensus 32 ~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~ 61 (191)
T PF04156_consen 32 GLGALISFILGIALLALGVVLLSLGLLCLL 61 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555554555556665544
No 19
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=54.21 E-value=84 Score=32.96 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=12.7
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 009383 255 ALDSVGLALIIVAAVMLFLAFLGFLFSVFGL 285 (536)
Q Consensus 255 ~l~~vrl~liiva~vmLlL~~lGlv~si~g~ 285 (536)
..|.+-..+-+++++++..+++ .|++|+
T Consensus 257 ~~N~imk~LTi~s~iflPpTlI---agiyGM 284 (322)
T COG0598 257 NQNEIMKILTIVSTIFLPPTLI---TGFYGM 284 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH---Hccccc
Confidence 3333333444455555555544 444443
No 20
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=53.03 E-value=11 Score=27.60 Aligned_cols=21 Identities=24% Similarity=0.882 Sum_probs=10.1
Q ss_pred HHHHHHHHh-hcccccCCCCcC
Q 009383 124 GLSLCFMCL-HYCCCRREPYGY 144 (536)
Q Consensus 124 gl~lL~~~~-c~CCc~r~~~~y 144 (536)
|+++++.++ |+-||.||++.+
T Consensus 15 g~~iiii~~~~YaCcykk~~~~ 36 (38)
T PF02439_consen 15 GMAIIIICMFYYACCYKKHRRQ 36 (38)
T ss_pred HHHHHHHHHHHHHHHHcccccc
Confidence 444444332 344566665544
No 21
>PRK09546 zntB zinc transporter; Reviewed
Probab=51.44 E-value=1.5e+02 Score=31.05 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 009383 262 ALIIVAAVMLFLAFLG 277 (536)
Q Consensus 262 ~liiva~vmLlL~~lG 277 (536)
.+-+++++.+-+.+++
T Consensus 266 ~Ltilt~IflPlT~Ia 281 (324)
T PRK09546 266 TMSLMAMVFLPTTFLT 281 (324)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555444443
No 22
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=51.02 E-value=2.3e+02 Score=27.03 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhHHHHHHHHhh
Q 009383 227 IDKIDRKINSSATTLSYQTKK 247 (536)
Q Consensus 227 i~~~~~~Lns~a~~i~~k~~~ 247 (536)
+....++..+.++++.++.++
T Consensus 78 Y~~~~~~~~~e~~~l~~~A~~ 98 (157)
T PF14235_consen 78 YKKEKARYKSEAEELEAKAKE 98 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444556777777777777654
No 23
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=49.90 E-value=12 Score=34.56 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHhhcchhhhcc
Q 009383 501 YIGLFMVSAAVMLSLI---FWVIYARERRHRVYT 531 (536)
Q Consensus 501 ~~gl~~~s~~~~l~~i---~Wi~~~r~~~~r~~~ 531 (536)
..|++++|.|+|+++. -|..+-|++|+|+..
T Consensus 82 ~~G~vlLs~GLmlL~~~alcW~~~~rkK~~kr~e 115 (129)
T PF15099_consen 82 IFGPVLLSLGLMLLACSALCWKPIIRKKKKKRRE 115 (129)
T ss_pred hehHHHHHHHHHHHHhhhheehhhhHhHHHHhhh
Confidence 3499999999998874 487766665554443
No 24
>PHA03029 hypothetical protein; Provisional
Probab=49.40 E-value=1.4e+02 Score=25.27 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009383 259 VGLALIIVAAVMLFLAFLGFLFS 281 (536)
Q Consensus 259 vrl~liiva~vmLlL~~lGlv~s 281 (536)
+.+++.++.-+++.|+.+|++.+
T Consensus 7 ~~~ii~~iiyiilila~igiiwg 29 (92)
T PHA03029 7 VFLIIAIIIYIILILAIIGIIWG 29 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556778888887654
No 25
>PRK01919 tatB sec-independent translocase; Provisional
Probab=49.36 E-value=95 Score=30.08 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=39.0
Q ss_pred HHhheeeccccccccchhhhHHHHHhhhhHHhHhHHh-HHHHHHHhhhcCccccccCcchhhhHHHHHHHHHhhHHHHHH
Q 009383 165 VGCIVLYTGQGKFHSSTLDTLNYVVKQAHITSESLQN-VSDYLAAAKTIGVNSVTLAPDVQSNIDKIDRKINSSATTLSY 243 (536)
Q Consensus 165 ~g~~vl~~Gn~~fh~~~~~~l~yvv~~an~tv~~l~n-Vt~~l~~ak~~~v~~~~lp~d~~~~i~~~~~~Lns~a~~i~~ 243 (536)
+.++++..|=+++-+-+ .++.-.++++...++++++ +.+.++ .+.+.+..+++++.+.++.+
T Consensus 13 ~VVALiV~GPekLP~~a-RtlGk~i~k~Rr~~~d~K~ev~~E~e----------------~dElrk~~~~~e~~~~~v~~ 75 (169)
T PRK01919 13 GVVALVVIGPERLPRVA-RTAGALFGRAQRYINDVKAEVSREIE----------------LDELRKMKTDFESAARDVEN 75 (169)
T ss_pred HHHHHheeCchHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh----------------HHHHHHHHHHHHHHHHHHHH
Confidence 34455667887766554 3444445665555555544 222221 12344555566666666666
Q ss_pred HHhhhHHHHHHh
Q 009383 244 QTKKNSKDIKDA 255 (536)
Q Consensus 244 k~~~n~~~I~~~ 255 (536)
.+.++.+.+.+-
T Consensus 76 si~~~~~~~~~~ 87 (169)
T PRK01919 76 TIHDNLSEHESD 87 (169)
T ss_pred HHHHHHHHHHhh
Confidence 555555555543
No 26
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=46.15 E-value=19 Score=31.97 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009383 294 ILGWILVAGTFILCGIFLL 312 (536)
Q Consensus 294 ilgwilv~~tWil~Gv~l~ 312 (536)
.+-|+|+++||+-|++|++
T Consensus 84 ~LPW~LL~lSW~gF~~Y~~ 102 (103)
T PF11169_consen 84 WLPWGLLVLSWIGFIAYIF 102 (103)
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 4679999999999999975
No 27
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=45.66 E-value=32 Score=27.75 Aligned_cols=32 Identities=19% Similarity=0.482 Sum_probs=24.5
Q ss_pred CcccCCchhhHHHHhhhhhHHHHHHHHHHHHHHH
Q 009383 92 GGWNISNKHYWASVGFTAAPFFIIAGIWFVVFGL 125 (536)
Q Consensus 92 gG~ni~n~hY~aSv~ftg~pg~via~lwfl~fgl 125 (536)
-|||+++-.| +++-.|+...+.-..||.++.+
T Consensus 28 ~~w~ltqneY--lt~MiGiWiVilFLtWf~lwm~ 59 (67)
T PF10854_consen 28 TTWNLTQNEY--LTIMIGIWIVILFLTWFLLWMV 59 (67)
T ss_pred eeeccccchh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999 6778888887777888654433
No 28
>KOG2348 consensus Urea transporter [Amino acid transport and metabolism]
Probab=44.63 E-value=41 Score=37.56 Aligned_cols=31 Identities=19% Similarity=0.539 Sum_probs=25.2
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009383 282 VFGLQCLVYFLVILGWILVAGTFILCGIFLL 312 (536)
Q Consensus 282 i~g~r~ll~~lvilgwilv~~tWil~Gv~l~ 312 (536)
..|.+.+..-..+-||+.+.+.|++++.|..
T Consensus 576 mygskyIFSk~fF~gWviV~iiW~~~~a~~i 606 (667)
T KOG2348|consen 576 MYGSKYIFSKLFFTGWVIVIIIWTFIAAFAI 606 (667)
T ss_pred ccCccceeechhhhHHHHHHHHHHHHHHHhe
Confidence 3566666667778999999999999999864
No 29
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=44.44 E-value=40 Score=29.33 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=6.9
Q ss_pred HHHHhheeeccccc
Q 009383 163 AIVGCIVLYTGQGK 176 (536)
Q Consensus 163 aI~g~~vl~~Gn~~ 176 (536)
.+++.+.+.+|-..
T Consensus 48 f~ia~~~ll~ga~~ 61 (97)
T PF06749_consen 48 FIIAEALLLAGASM 61 (97)
T ss_pred HHHHHHHHHHHHhc
Confidence 34455555555543
No 30
>PHA00094 VI minor coat protein
Probab=43.83 E-value=63 Score=29.16 Aligned_cols=47 Identities=13% Similarity=0.262 Sum_probs=30.9
Q ss_pred ccchhhhhhCCCCCCCCCccccCCCchhhHHHHHHHHHHHHHHHHHHH
Q 009383 321 CVSMDEWVKNPTAHTALDDILPCVDNATAQETLKQTKTVTNQLVSVVD 368 (536)
Q Consensus 321 CvAmdeyv~nPt~ntaL~~iLPCvd~~ta~~~l~~skev~~~lv~~vN 368 (536)
=+.|.+|++..+ .---|+..||+..-.+.+...-.=++-.++++..|
T Consensus 63 ~vlP~d~~~~~~-mvlPsNa~pCv~aI~Sari~vfVfD~K~r~l~y~~ 109 (112)
T PHA00094 63 SILPPDFVDAVS-MVVPSNAIPCVYAIFSAKAAVFVFDVKDRILGYLD 109 (112)
T ss_pred hhCChHHHHHHH-HhcCCCchhHHHHHHHHhHHhhheehHHHHhhhcc
Confidence 347888888665 44467889999877666665544455555555554
No 31
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.70 E-value=86 Score=31.95 Aligned_cols=56 Identities=9% Similarity=0.104 Sum_probs=27.5
Q ss_pred hHHhHHHHHHHhhhcCccccccCcchhhhHHHHHHHHHhhHHHHHHHHhhhHHHHHHhHh
Q 009383 198 SLQNVSDYLAAAKTIGVNSVTLAPDVQSNIDKIDRKINSSATTLSYQTKKNSKDIKDALD 257 (536)
Q Consensus 198 ~l~nVt~~l~~ak~~~v~~~~lp~d~~~~i~~~~~~Lns~a~~i~~k~~~n~~~I~~~l~ 257 (536)
+++.+++++...|+++.. ..-..+.|+. +..+|+...+.+.+|+..-.+++.++.+
T Consensus 153 ~Ld~ls~ti~rlk~~a~~-~g~EL~~Q~~---llDdl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 153 GLDGLSATVQRLKGMALA-MGEELEEQGR---LLDDLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHH-HhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666553221 1112223333 2236666666667776655555555544
No 32
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=42.48 E-value=11 Score=34.06 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Q 009383 498 KWIYIGLFMVSAAVMLSLIFWVIYARERRHRV 529 (536)
Q Consensus 498 ~~v~~gl~~~s~~~~l~~i~Wi~~~r~~~~r~ 529 (536)
...|-+=-+++.-.+|+++|.++|+|||.+..
T Consensus 57 ysawgagsfiatliillviffviy~re~~~~~ 88 (150)
T PF06084_consen 57 YSAWGAGSFIATLIILLVIFFVIYSREEEKNN 88 (150)
T ss_pred hhhcccchHHHHHHHHHHHhheeEeccccccC
Confidence 34455555677888889999999999987643
No 33
>PF14979 TMEM52: Transmembrane 52
Probab=42.46 E-value=19 Score=34.05 Aligned_cols=8 Identities=38% Similarity=0.808 Sum_probs=4.3
Q ss_pred hhcccccC
Q 009383 132 LHYCCCRR 139 (536)
Q Consensus 132 ~c~CCc~r 139 (536)
|-+|||.|
T Consensus 41 C~rfCClr 48 (154)
T PF14979_consen 41 CVRFCCLR 48 (154)
T ss_pred HHHHHHhc
Confidence 34666644
No 34
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=40.88 E-value=92 Score=30.75 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=17.5
Q ss_pred ccCcccCCchhhHH-----HHhhhhhHHHHHHHHH
Q 009383 90 YKGGWNISNKHYWA-----SVGFTAAPFFIIAGIW 119 (536)
Q Consensus 90 Y~gG~ni~n~hY~a-----Sv~ftg~pg~via~lw 119 (536)
++..|+.+.++-|+ -.-|.++-+++|..+-
T Consensus 52 ~~~~y~~~~~~~w~~C~~rr~~Fr~aqAfaIISI~ 86 (192)
T PTZ00201 52 KSTEYDVTVDMLWANCPARILQFRVAQALAVISIL 86 (192)
T ss_pred CCCCcCCchHhHHHhChHHHHHHHHHHHHHHHHHH
Confidence 44567777656663 3456666665555555
No 35
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=40.01 E-value=29 Score=26.07 Aligned_cols=35 Identities=23% Similarity=0.466 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhc
Q 009383 495 RHSKWIYIGLFMVSAAVMLSLIFWVIYARERRHRVY 530 (536)
Q Consensus 495 ~~~~~v~~gl~~~s~~~~l~~i~Wi~~~r~~~~r~~ 530 (536)
.|.-.||.+..+ +..++..+++|....|++.+|.-
T Consensus 3 gy~~yVW~sYg~-t~l~l~~li~~~~~~~r~~~~~l 37 (45)
T TIGR03141 3 GYAFYVWLAYGI-TALVLAGLILWSLLDRRRLLREL 37 (45)
T ss_pred CccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888877 66777777888777666655543
No 36
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=39.04 E-value=3.6e+02 Score=28.35 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=34.9
Q ss_pred hhHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH----hc------------------hhHHHHHHHHHHHHHHHHHH
Q 009383 247 KNSKDIKDALDSVGLALIIVAAVMLFLAFLGFLFSV----FG------------------LQCLVYFLVILGWILVAGTF 304 (536)
Q Consensus 247 ~n~~~I~~~l~~vrl~liiva~vmLlL~~lGlv~si----~g------------------~r~ll~~lvilgwilv~~tW 304 (536)
+..+++.+..+.++.+.+.++++|.+-+++-...++ ++ .+.+++-....|.+-..+.|
T Consensus 154 ~wv~rL~ai~~~~~~v~~~~~~ll~~~~vllI~NtiR~~i~sRr~eIeVmklvGAt~~fI~~PFl~~g~~~gl~Ga~~~~ 233 (297)
T COG2177 154 EWVDRLFAILRLVRTVGIGLSILLALAAVLLIGNTIRLAIFSRRREIEVMKLVGATDSFIRRPFLYEGMLIGLLGALIAL 233 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccchHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445555566666677666666555554444332221 11 13455666667766666777
Q ss_pred HHHHH
Q 009383 305 ILCGI 309 (536)
Q Consensus 305 il~Gv 309 (536)
++++.
T Consensus 234 ~l~~~ 238 (297)
T COG2177 234 ALAAL 238 (297)
T ss_pred HHHHH
Confidence 77664
No 37
>PF03172 Sp100: Sp100 domain; InterPro: IPR004865 The Sp100 and promyelocytic leukemia proteins (PML) are constituents of nuclear domains, known as nuclear dots (NDs or NBs - nuclear bodies or PML bodies), and are both covalently modified by the small ubiquitin-related protein SUMO-1. NBs play a role in autoimmunity, virus infections, and in the etiology of acute promyelocytic leukemia []. A functional nuclear localization signal and an NB-targeting region that coincides with an Sp100 homodimerization domain have been mapped. Sequences similar to the Sp100 homodimerization/ND-targeting region occur in several other proteins, which include the autoimmune regulator proteins (AIRE) and other numerous other transiently or permanently localised proteins. PML is expressed as a family of isoforms (PML I-VII) as a result of alternative splicing, most of which are found in the nucleus. Although there are many other functions of PML NBs in a wide range of cellular pathways, there is accumulating evidence that they represent preferential targets for viral infections and that PML plays a role in the mechanism of the antiviral action of interferon []. The Sp100 domain is usually found at the amino terminus of proteins that contain a SAND domain IPR000770 from INTERPRO. ; GO: 0005634 nucleus
Probab=36.86 E-value=14 Score=32.94 Aligned_cols=57 Identities=25% Similarity=0.456 Sum_probs=45.8
Q ss_pred HHHHHHHHhhcccccccCCchhHHHHHhhcccCCCccHHHhHHHHHHHHHHHHHHHH
Q 009383 456 VNVSYALYRYGPFLVNLQDCTFVRDTFTDISRDHCPGLQRHSKWIYIGLFMVSAAVM 512 (536)
Q Consensus 456 ~n~~~~L~~~~P~l~~L~~C~fVr~~F~~I~~~~C~~l~~~~~~v~~gl~~~s~~~~ 512 (536)
+..++++.+-+|+|+.|.|.+|+-|.-=+-+.+-|..+..--+-+|.-|-=+--...
T Consensus 15 vEIa~AI~kpFPfl~gLrD~~~ItE~~y~e~~e~crnlvpv~rvvY~vLs~Lek~f~ 71 (103)
T PF03172_consen 15 VEIAYAITKPFPFLEGLRDHSFITEQMYKESQEACRNLVPVQRVVYNVLSWLEKTFI 71 (103)
T ss_pred HHHHHHHcccchHHHHhhhcccccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh
Confidence 567889999999999999999998875555668999998888888877655544443
No 38
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=36.48 E-value=2.6e+02 Score=26.18 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHhhhH
Q 009383 224 QSNIDKIDRKINSSATTLSYQTKKNS 249 (536)
Q Consensus 224 ~~~i~~~~~~Lns~a~~i~~k~~~n~ 249 (536)
-.++.+...++|++++.+.+++..+.
T Consensus 82 V~dl~~SV~~ln~s~r~~~~~~t~~~ 107 (139)
T COG4768 82 VKDLGQSVSDLNQSVRHLATRATNAV 107 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 34566667788888888777766433
No 39
>PHA03189 UL14 tegument protein; Provisional
Probab=36.12 E-value=30 Score=36.47 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=18.7
Q ss_pred hhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009383 99 KHYWASVGFTAAPFFIIAGIWFVVFGLSLCFMCLHYCCC 137 (536)
Q Consensus 99 ~hY~aSv~ftg~pg~via~lwfl~fgl~lL~~~~c~CCc 137 (536)
..||.+-+..|.-+| | +.|+..+.+.++|.-+|
T Consensus 286 ~~~W~t~g~ag~l~~-----~-v~~~c~l~~l~~C~rlc 318 (348)
T PHA03189 286 RSPWATRGMAGMLIF-----G-VCFACYLVYLTLCGRLC 318 (348)
T ss_pred cchhhhcchhhhhhh-----h-hhhhHHHHHHHHHHHHh
Confidence 589999888875332 2 33344444444554344
No 40
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=35.28 E-value=3.1e+02 Score=25.74 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=28.0
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 009383 283 FGLQCLVYFLVILGWILVAGTFILCGIFLLLHNVVADTCV 322 (536)
Q Consensus 283 ~g~r~ll~~lvilgwilv~~tWil~Gv~l~l~~~vsDtCv 322 (536)
.+.|+....+.+++++...++|.+.-.-+- +|.|.
T Consensus 91 ~~~r~v~l~L~~~~~~~~~v~wa~~v~~Y~-----~~~C~ 125 (155)
T PF07344_consen 91 SCLRWVCLVLNIVGIVTLLVVWALMVVVYY-----GGFCG 125 (155)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCc
Confidence 456888888999999999999987665553 89995
No 41
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=35.03 E-value=2.3e+02 Score=24.28 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=26.3
Q ss_pred HHHHHhchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009383 278 FLFSVFGLQCL---VYFLVILGWILVAGTFILCGIFLLLHNV 316 (536)
Q Consensus 278 lv~si~g~r~l---l~~lvilgwilv~~tWil~Gv~l~l~~~ 316 (536)
+.-.+++-+-. +..-+++|....+++|++.++|.-..|-
T Consensus 38 ~~p~~m~~~v~~G~~t~g~~~g~~~~~~~~~l~~~Yv~~An~ 79 (91)
T PF04341_consen 38 FAPELMATPVFPGSLTLGIVLGLGQIVFAWVLTWLYVRRANR 79 (91)
T ss_pred HCHHHHcCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33344454322 4555677878888999999999876554
No 42
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=34.38 E-value=59 Score=24.45 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Q 009383 496 HSKWIYIGLFMVSAAVMLSLIFWVIYARERRHRV 529 (536)
Q Consensus 496 ~~~~v~~gl~~~s~~~~l~~i~Wi~~~r~~~~r~ 529 (536)
|.-.||.+..+ +..+++.+++|....+++-++.
T Consensus 3 y~~yVW~sYg~-t~~~l~~l~~~~~~~~r~~~~~ 35 (46)
T PF04995_consen 3 YGFYVWSSYGV-TALVLAGLIVWSLRRRRRLRKE 35 (46)
T ss_pred cHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45578888876 6666666777766655554443
No 43
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=33.93 E-value=4.4e+02 Score=25.46 Aligned_cols=15 Identities=13% Similarity=0.062 Sum_probs=9.9
Q ss_pred hhhccccccchhhhh
Q 009383 314 HNVVADTCVSMDEWV 328 (536)
Q Consensus 314 ~~~vsDtCvAmdeyv 328 (536)
+=+.|+..++++.|.
T Consensus 192 ~Pf~G~i~Vs~~p~~ 206 (209)
T PF14023_consen 192 NPFSGPISVSPAPFR 206 (209)
T ss_pred CCCCCCCCcCHHHHH
Confidence 456777777776554
No 44
>PF07662 Nucleos_tra2_C: Na+ dependent nucleoside transporter C-terminus; InterPro: IPR011657 This entry consists of nucleoside transport proteins. Q62773 from SWISSPROT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. Q62674 from SWISSPROT is a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine. It also transports the anti-viral nucleoside analogues AZT and ddC []. This entry covers the C terminus of this family of transporters.; PDB: 3TIJ_A.
Probab=33.12 E-value=2.7e+02 Score=27.97 Aligned_cols=53 Identities=32% Similarity=0.537 Sum_probs=34.7
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhch-------hHHHHHHHHHHHHHHHHHHHH
Q 009383 253 KDALDSVGLALIIVAAVMLFLAFLGFLFSVFGL-------QCLVYFLVILGWILVAGTFIL 306 (536)
Q Consensus 253 ~~~l~~vrl~liiva~vmLlL~~lGlv~si~g~-------r~ll~~lvilgwilv~~tWil 306 (536)
+...+.+++++.|.+-++-.++++.++=++++| +. +.+=.++||+.-++.|++
T Consensus 49 ~Ga~~g~~la~~I~a~LIafvalial~N~~l~~ig~~~g~~~-lsl~~ilGyif~P~awlm 108 (210)
T PF07662_consen 49 NGALDGLKLALNIGAMLIAFVALIALLNGVLGWIGSLFGIEG-LSLQQILGYIFSPLAWLM 108 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT-TT---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc-ccHHHHHhhhhhHHHHHc
Confidence 356677888888888777777777654433332 21 356677888888888864
No 45
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=32.99 E-value=6.1e+02 Score=26.80 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 009383 262 ALIIVAAVMLFLAFLG 277 (536)
Q Consensus 262 ~liiva~vmLlL~~lG 277 (536)
.+-+++++++...+++
T Consensus 258 ~lTv~s~if~pptlia 273 (316)
T PRK11085 258 IFSVVSVVFLPPTLVA 273 (316)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555444
No 46
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=32.05 E-value=1.8e+02 Score=27.23 Aligned_cols=7 Identities=29% Similarity=0.211 Sum_probs=2.9
Q ss_pred hhhhHHH
Q 009383 181 TLDTLNY 187 (536)
Q Consensus 181 ~~~~l~y 187 (536)
+..++|+
T Consensus 29 v~~tlde 35 (139)
T COG4768 29 VSKTLDE 35 (139)
T ss_pred HHHHHHH
Confidence 3344444
No 47
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=31.57 E-value=1.1e+02 Score=30.11 Aligned_cols=40 Identities=28% Similarity=0.413 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 009383 259 VGLALIIVAAVMLFLAFLGFLFSVFGLQCLVYFLVILGWI 298 (536)
Q Consensus 259 vrl~liiva~vmLlL~~lGlv~si~g~r~ll~~lvilgwi 298 (536)
.-+.++++.+++++++++|+.-++...|+++....++..+
T Consensus 52 ~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~~~l~l 91 (237)
T KOG3882|consen 52 PAYILIAVGGVVFLVGFLGCCGALRESRCLLLSYFILLLL 91 (237)
T ss_pred chhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHHHHHHH
Confidence 3456788889999999999998888888866544444433
No 48
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=31.36 E-value=2.1e+02 Score=23.30 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=20.4
Q ss_pred HHHHHhheeeccccccccchhhhHHHHHhhhhHHhHhHHhH
Q 009383 162 SAIVGCIVLYTGQGKFHSSTLDTLNYVVKQAHITSESLQNV 202 (536)
Q Consensus 162 ~aI~g~~vl~~Gn~~fh~~~~~~l~yvv~~an~tv~~l~nV 202 (536)
.+++|.++++.--++ +| .++.+.+.+++++..+++.+.
T Consensus 8 Ga~~Ga~~glL~aP~--sG-~e~R~~l~~~~~~~~~~~~~~ 45 (74)
T PF12732_consen 8 GAAAGAAAGLLFAPK--SG-KETREKLKDKAEDLKDKAKDL 45 (74)
T ss_pred HHHHHHHHHHHhCCC--Cc-HHHHHHHHHHHHHHHHHHHHH
Confidence 334454444444443 33 456666677777666555544
No 49
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=31.34 E-value=4.7e+02 Score=28.78 Aligned_cols=15 Identities=20% Similarity=-0.108 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 009383 290 YFLVILGWILVAGTF 304 (536)
Q Consensus 290 ~~lvilgwilv~~tW 304 (536)
....++.++++++.|
T Consensus 375 ~~~t~~~v~l~~~~~ 389 (395)
T PF10267_consen 375 TLTTLLLVGLGAILW 389 (395)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555555555
No 50
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=31.20 E-value=3.5e+02 Score=26.28 Aligned_cols=144 Identities=17% Similarity=0.296 Sum_probs=0.0
Q ss_pred ccccccccCCCCccCccccccCcccCCchhhHHH-HhhhhhHHHHHH----------HHHHHHHHHHHHHHHhh-----c
Q 009383 71 LILAEKRTQRKDPIDNFHKYKGGWNISNKHYWAS-VGFTAAPFFIIA----------GIWFVVFGLSLCFMCLH-----Y 134 (536)
Q Consensus 71 ~~laa~rt~R~Dpl~~fk~Y~gG~ni~n~hY~aS-v~ftg~pg~via----------~lwfl~fgl~lL~~~~c-----~ 134 (536)
|+|-.+|..|||| +.|||++.- -|+|--|.|. -..+.+.++++. ++..+...+.-++|-.. +
T Consensus 25 F~lgS~Rfa~Pd~-~D~~kW~nR-VisNLLYyQTNYfv~~it~~~l~~f~sp~~iilglivvvlvi~~liwa~~~~a~~k 102 (188)
T KOG4050|consen 25 FLLGSDRFARPDF-NDFKKWNNR-VISNLLYYQTNYFVTFITLFLLHGFISPQDIILGLIVVVLVIGTLIWAASADANIK 102 (188)
T ss_pred hccCcccccCCCC-ccHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Q ss_pred ccccCCCCcCCchhHHHHHHHHHHHHHHHHHHhheeeccccccccchhhhHHHHHhhhhHHhHhHHh-HHHHHHHhhhcC
Q 009383 135 CCCRREPYGYSRTCYALSLILLVFFTISAIVGCIVLYTGQGKFHSSTLDTLNYVVKQAHITSESLQN-VSDYLAAAKTIG 213 (536)
Q Consensus 135 CCc~r~~~~ys~~~~~~slillilft~~aI~g~~vl~~Gn~~fh~~~~~~l~yvv~~an~tv~~l~n-Vt~~l~~ak~~~ 213 (536)
-|.++.+.-.--........++-+|..++....++++ -+--+.-+|.--..+++| .++.+|+ ++
T Consensus 103 rmr~~hp~~~l~gvllv~yfli~v~~~vlv~~F~il~------------Pv~L~lvHASLRLRnikNkleN~iEs---ig 167 (188)
T KOG4050|consen 103 RMRTDHPLVTLAGVLLVGYFLISVFGGVLVFAFAILF------------PVLLVLVHASLRLRNIKNKLENKIES---IG 167 (188)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhHHHHHHHHHhh---cC
Q ss_pred ccccccCcchhhhHHHHHHHHHhhHH
Q 009383 214 VNSVTLAPDVQSNIDKIDRKINSSAT 239 (536)
Q Consensus 214 v~~~~lp~d~~~~i~~~~~~Lns~a~ 239 (536)
. .+..+.++.+.++...+
T Consensus 168 l--------krTpMG~lLdal~~~~e 185 (188)
T KOG4050|consen 168 L--------KRTPMGQLLDALGQNVE 185 (188)
T ss_pred c--------CCCcHHHHHHHhcchhc
No 51
>PF14163 SieB: Superinfection exclusion protein B
Probab=30.99 E-value=52 Score=30.59 Aligned_cols=27 Identities=15% Similarity=0.328 Sum_probs=20.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009383 493 LQRHSKWIYIGLFMVSAAVMLSLIFWVI 520 (536)
Q Consensus 493 l~~~~~~v~~gl~~~s~~~~l~~i~Wi~ 520 (536)
...|..|+|.++++ |+++++..+++.+
T Consensus 29 ~~~y~~~i~~~fl~-s~s~li~~~~~~~ 55 (151)
T PF14163_consen 29 EIKYQPWIGLIFLF-SVSYLIAQLLSFI 55 (151)
T ss_pred HHhcchHHHHHHHH-HHHHHHHHHHHHH
Confidence 35678888888865 8888888877655
No 52
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=30.74 E-value=1.1e+02 Score=28.08 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhheeeccccccccchhhhHHHHHhh
Q 009383 157 VFFTISAIVGCIVLYTGQGKFHSSTLDTLNYVVKQ 191 (536)
Q Consensus 157 ilft~~aI~g~~vl~~Gn~~fh~~~~~~l~yvv~~ 191 (536)
.+|+++.++..+++++|-.+..+.+.+..+-.+.+
T Consensus 16 ~~~~~ll~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 50 (171)
T PF02203_consen 16 ALFLLLLLVVGGLGFWGLRSSNESLEEIYQQSLQQ 50 (171)
T ss_dssp ---------HHCCCCCCHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555667888898888777764444433333
No 53
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=30.42 E-value=8.9e+02 Score=27.90 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=34.6
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH------HHHHHH-----hhhccccccchhhhhhCCC
Q 009383 276 LGFLFSVFGLQCLVYFLVILGWILVAGTFILC------GIFLLL-----HNVVADTCVSMDEWVKNPT 332 (536)
Q Consensus 276 lGlv~si~g~r~ll~~lvilgwilv~~tWil~------Gv~l~l-----~~~vsDtCvAmdeyv~nPt 332 (536)
.+++++++++...+.+..+++.+++++-|++. |-++.- -+=..|.=..+.||...-.
T Consensus 149 ~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~ 216 (573)
T COG4987 149 VTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGA 216 (573)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHccc
Confidence 33556677888777777777777777777763 222221 1334566666777665443
No 54
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=30.35 E-value=1e+02 Score=25.24 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHhhhHHHHHHh
Q 009383 224 QSNIDKIDRKINSSATTLSYQTKKNSKDIKDA 255 (536)
Q Consensus 224 ~~~i~~~~~~Lns~a~~i~~k~~~n~~~I~~~ 255 (536)
++-+.+++.+.+.+.+.|.+|+.+....|++.
T Consensus 22 Q~lLQq~QDkFQtMSDQII~RiDDM~~riDDL 53 (73)
T KOG4117|consen 22 QGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 56678888899999999999988777666654
No 55
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=29.75 E-value=76 Score=31.89 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=14.7
Q ss_pred hhhhHHH-HHHHHHHHHHHHHHHHHHhhccccc
Q 009383 107 FTAAPFF-IIAGIWFVVFGLSLCFMCLHYCCCR 138 (536)
Q Consensus 107 ftg~pg~-via~lwfl~fgl~lL~~~~c~CCc~ 138 (536)
..+.+++ +|+.+-| +||+++...++|.|||+
T Consensus 173 ~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~ 204 (224)
T PTZ00443 173 DAAFAGFFTISSFAF-LFGILMGLMIALFAFSK 204 (224)
T ss_pred HHHhhhHHHHHHHHH-HHHHHHHHHHHHHHccc
Confidence 3344443 4444444 46766644344444444
No 56
>COG3162 Predicted membrane protein [Function unknown]
Probab=29.36 E-value=2.8e+02 Score=24.77 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009383 289 VYFLVILGWILVAGTFILCGIFLLLHNV 316 (536)
Q Consensus 289 l~~lvilgwilv~~tWil~Gv~l~l~~~ 316 (536)
+..-+.+|......+|++.|+|.--+|.
T Consensus 60 Vt~Gip~gvg~fv~tfVlt~IYv~rAn~ 87 (102)
T COG3162 60 VTRGIPFGVGVFVMTFVLTGIYVRRANG 87 (102)
T ss_pred eehhHhHHHHHHHHHHHHHHHHhhHhhc
Confidence 3344566667777899999999877664
No 57
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=29.17 E-value=3.6e+02 Score=22.93 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=9.7
Q ss_pred HhhhhHHhHhHHhHHHHHHHh
Q 009383 189 VKQAHITSESLQNVSDYLAAA 209 (536)
Q Consensus 189 v~~an~tv~~l~nVt~~l~~a 209 (536)
++++..+.+.+.+-+++|..+
T Consensus 21 v~~s~~t~~~L~~Ss~~L~~~ 41 (92)
T PF03908_consen 21 VERSELTLQTLEESSATLRST 41 (92)
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 444444444444444444443
No 58
>PRK10404 hypothetical protein; Provisional
Probab=28.36 E-value=4e+02 Score=23.52 Aligned_cols=22 Identities=14% Similarity=0.566 Sum_probs=10.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHhh
Q 009383 226 NIDKIDRKINSSATTLSYQTKK 247 (536)
Q Consensus 226 ~i~~~~~~Lns~a~~i~~k~~~ 247 (536)
.++.+..++....+...+|...
T Consensus 46 ~L~~ar~~l~~~~~~~~~~~k~ 67 (101)
T PRK10404 46 ALDDVKKRVSQASDSYYYRAKQ 67 (101)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3444444555555544444433
No 59
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=28.36 E-value=3.1e+02 Score=26.63 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009383 290 YFLVILGWILVAGTFILCGIFLLLHNVVADT 320 (536)
Q Consensus 290 ~~lvilgwilv~~tWil~Gv~l~l~~~vsDt 320 (536)
..-..++...+.++|++.-.-+++|-+-.|.
T Consensus 82 ~~~~~la~~tv~~sW~~ih~~FAl~YA~~yy 112 (180)
T PF07077_consen 82 ALHIALALATVVLSWLLIHTVFALHYAHLYY 112 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667778899988888888765555
No 60
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=28.35 E-value=2.6e+02 Score=23.49 Aligned_cols=6 Identities=17% Similarity=0.523 Sum_probs=2.2
Q ss_pred HHHHHH
Q 009383 157 VFFTIS 162 (536)
Q Consensus 157 ilft~~ 162 (536)
+-|.++
T Consensus 8 iaf~vL 13 (90)
T PF06103_consen 8 IAFAVL 13 (90)
T ss_pred HHHHHH
Confidence 333333
No 61
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=27.69 E-value=4.2e+02 Score=27.20 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=21.9
Q ss_pred heeeccccccccchhhhHHHHHhhhhHHhHhHHh
Q 009383 168 IVLYTGQGKFHSSTLDTLNYVVKQAHITSESLQN 201 (536)
Q Consensus 168 ~vl~~Gn~~fh~~~~~~l~yvv~~an~tv~~l~n 201 (536)
+-.+-|+++--..+...++.++.+.|.-..+++.
T Consensus 23 a~Al~GrG~~lg~~l~~l~~~l~~ln~~~~~l~~ 56 (267)
T PF11887_consen 23 ATALDGRGEQLGETLDDLNTLLATLNPRLPQLRE 56 (267)
T ss_pred HHHHcCcchhHHHHHHHHHHHHHHHhccchHHHH
Confidence 3447888876666666677667776655555444
No 62
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=27.57 E-value=2.1e+02 Score=23.92 Aligned_cols=28 Identities=11% Similarity=0.355 Sum_probs=19.8
Q ss_pred CcchhhhHHHHHHHHHhhHHHHHHHHhh
Q 009383 220 APDVQSNIDKIDRKINSSATTLSYQTKK 247 (536)
Q Consensus 220 p~d~~~~i~~~~~~Lns~a~~i~~k~~~ 247 (536)
..++|..+++++++|...--.+.++.+.
T Consensus 4 Se~E~r~L~eiEr~L~~~DP~fa~~l~~ 31 (82)
T PF11239_consen 4 SEHEQRRLEEIERQLRADDPRFAARLRS 31 (82)
T ss_pred CHHHHHHHHHHHHHHHhcCcHHHHHhcc
Confidence 3455777999999997776666666544
No 63
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.54 E-value=4.7e+02 Score=23.78 Aligned_cols=50 Identities=16% Similarity=0.289 Sum_probs=32.0
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH-Hhch-hHHHHHHHHHHHHH
Q 009383 249 SKDIKDALDSVGLALIIVAAVMLFLAFLGFLFS-VFGL-QCLVYFLVILGWIL 299 (536)
Q Consensus 249 ~~~I~~~l~~vrl~liiva~vmLlL~~lGlv~s-i~g~-r~ll~~lvilgwil 299 (536)
..+++...+.+++..=.|+++|... ++|.++- ++|. +|.++++.++|..+
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa-~iG~llD~~agTsPwglIv~lllGf~A 87 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGA-GIGWLLDKFAGTSPWGLIVFLLLGFGA 87 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3456666677788777777776664 4665442 4453 67777777777654
No 64
>PF13994 PgaD: PgaD-like protein
Probab=27.52 E-value=65 Score=29.74 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhc
Q 009383 506 MVSAAVMLSLIFWVIYARERRHRVY 530 (536)
Q Consensus 506 ~~s~~~~l~~i~Wi~~~r~~~~r~~ 530 (536)
.++++....++.|..|+|.|.|...
T Consensus 69 ~i~~~~a~~Li~Wa~yn~~Rf~~~~ 93 (138)
T PF13994_consen 69 LIALVNAVILILWAKYNRLRFRGRR 93 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchh
Confidence 3345555566999999976655433
No 65
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=26.70 E-value=29 Score=32.72 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=12.1
Q ss_pred hhHHHHh-hhhhHHHHHHHHH
Q 009383 100 HYWASVG-FTAAPFFIIAGIW 119 (536)
Q Consensus 100 hY~aSv~-ftg~pg~via~lw 119 (536)
.|.++++ -||+.|++.+++.
T Consensus 52 ~yi~~~lsgtAIaGIVfgiVf 72 (155)
T PF10873_consen 52 AYIGDVLSGTAIAGIVFGIVF 72 (155)
T ss_pred hhhccccccceeeeeehhhHH
Confidence 5667755 5666665555555
No 66
>PHA00646 hypothetical protein
Probab=26.12 E-value=68 Score=26.00 Aligned_cols=29 Identities=21% Similarity=0.524 Sum_probs=22.9
Q ss_pred cccCCchhhHHHHhhhhhHHHHHHHHHHHHH
Q 009383 93 GWNISNKHYWASVGFTAAPFFIIAGIWFVVF 123 (536)
Q Consensus 93 G~ni~n~hY~aSv~ftg~pg~via~lwfl~f 123 (536)
||++++-+| ++.-.|+..++.-..||.++
T Consensus 27 ~~~~~~~eY--~~~MVgIWlvI~Fl~Wf~i~ 55 (65)
T PHA00646 27 MWNLTQNEY--LTLMVGIWLVILFLTWFSLW 55 (65)
T ss_pred EEeccccee--ehhHHHHHHHHHHHHHHHHH
Confidence 899999999 67778888888888886443
No 67
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=25.87 E-value=1.6e+02 Score=29.27 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=33.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH--HHHhhcccccCCCCcCCchhHHHHHHHHHHHHHHHHHHhheee
Q 009383 106 GFTAAPFFIIAGIWFVVFGLSLC--FMCLHYCCCRREPYGYSRTCYALSLILLVFFTISAIVGCIVLY 171 (536)
Q Consensus 106 ~ftg~pg~via~lwfl~fgl~lL--~~~~c~CCc~r~~~~ys~~~~~~slillilft~~aI~g~~vl~ 171 (536)
++.| ++|++|+...|.... +.+.= ..++..+.-+.....|.+...|...++-|+|.+-++
T Consensus 23 iLlG----~CaaiWLa~lG~~VaA~VaL~D--lgrg~~~~s~ss~T~WvLY~VI~VSaaVIagAVPlL 84 (207)
T PF10812_consen 23 ILLG----ACAAIWLAALGVSVAATVALVD--LGRGFHESSGSSGTPWVLYAVIGVSAAVIAGAVPLL 84 (207)
T ss_pred HHHH----HHHHHHHHHHHHHHHHhheeec--ccCCccCcCCCCCCCEeehHHHHHHHHHHHHHHHHH
Confidence 4566 789999876665431 11110 123333333334456777777777777777754443
No 68
>PF14979 TMEM52: Transmembrane 52
Probab=25.86 E-value=82 Score=29.89 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=24.2
Q ss_pred cCCCccHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 009383 487 RDHCPGLQRHSKWIYIGLFMVSAAVMLSLIFW 518 (536)
Q Consensus 487 ~~~C~~l~~~~~~v~~gl~~~s~~~~l~~i~W 518 (536)
+++|++-.+..+.-|++|+++.+.++|+--++
T Consensus 7 ~e~C~~~~~W~~LWyIwLill~~~llLLCG~t 38 (154)
T PF14979_consen 7 PEMCPPQTRWSSLWYIWLILLIGFLLLLCGLT 38 (154)
T ss_pred cccCCCccceehhhHHHHHHHHHHHHHHHHHH
Confidence 57899877888888999988877776654444
No 69
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=25.27 E-value=1e+02 Score=24.09 Aligned_cols=24 Identities=21% Similarity=0.671 Sum_probs=15.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 009383 102 WASVGFTAAPFFIIAGIWFVVFGLSLCF 129 (536)
Q Consensus 102 ~aSv~ftg~pg~via~lwfl~fgl~lL~ 129 (536)
|+++=.-| .++|++.|+ .|++.+.
T Consensus 11 y~tLrigG---Li~A~vlfi-~Gi~iil 34 (50)
T PF02038_consen 11 YETLRIGG---LIFAGVLFI-LGILIIL 34 (50)
T ss_dssp HHHHHHHH---HHHHHHHHH-HHHHHHC
T ss_pred hhHhhccc---hHHHHHHHH-HHHHHHH
Confidence 57765555 477888865 4665444
No 70
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=25.25 E-value=72 Score=28.54 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhhcccc
Q 009383 501 YIGLFMVSAAVMLSLIFWVIYARERRHRVYTKN 533 (536)
Q Consensus 501 ~~gl~~~s~~~~l~~i~Wi~~~r~~~~r~~~~~ 533 (536)
|.=++++++.+++++++=+++-|..|||+...+
T Consensus 1 w~Ll~il~llLll~l~asl~~wr~~~rq~k~~~ 33 (107)
T PF15330_consen 1 WLLLGILALLLLLSLAASLLAWRMKQRQKKAGQ 33 (107)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 344566677777777776666666666655444
No 71
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=25.22 E-value=72 Score=33.01 Aligned_cols=43 Identities=21% Similarity=0.428 Sum_probs=35.0
Q ss_pred cCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Q 009383 487 RDHCPGLQRHSKWIYIGLFMVSAAVMLSLIFWVIYARERRHRV 529 (536)
Q Consensus 487 ~~~C~~l~~~~~~v~~gl~~~s~~~~l~~i~Wi~~~r~~~~r~ 529 (536)
.|-|=.-+.....+...++++.++.+++++-|.+|-|++|||.
T Consensus 218 gNlCw~~~~~s~l~~~~~i~L~~~~i~l~~gw~~y~~~~krre 260 (262)
T PF11884_consen 218 GNLCWSEEDHSHLLRISMIALVLANILLVLGWSLYRWNQKRRE 260 (262)
T ss_pred cceeeccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4778888888888888888888888888888999988877765
No 72
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.43 E-value=49 Score=30.37 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC
Q 009383 109 AAPFFIIAGIWFVVFGLSLCFMCLHYCCCRREPY 142 (536)
Q Consensus 109 g~pg~via~lwfl~fgl~lL~~~~c~CCc~r~~~ 142 (536)
++.+++++++- |+++.+.++-+|++|++++
T Consensus 65 ~i~~Ii~gv~a----GvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 65 AIIGIIFGVMA----GVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp CHHHHHHHHHH----HHHHHHHHHHHHHHHHS--
T ss_pred ceeehhHHHHH----HHHHHHHHHHHHHHHHhcc
No 73
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=23.88 E-value=2.3e+02 Score=25.18 Aligned_cols=19 Identities=11% Similarity=-0.013 Sum_probs=11.9
Q ss_pred Hhheeeccccccccchhhh
Q 009383 166 GCIVLYTGQGKFHSSTLDT 184 (536)
Q Consensus 166 g~~vl~~Gn~~fh~~~~~~ 184 (536)
..++++++-.+.++.+.+.
T Consensus 22 ~~~~~~~~l~~~~~~~~~i 40 (181)
T PF12729_consen 22 VGIVGLYSLSQINQNVEEI 40 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3466677777776666433
No 74
>PF15345 TMEM51: Transmembrane protein 51
Probab=23.83 E-value=30 Score=35.06 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhhcc
Q 009383 501 YIGLFMVSAAVMLSLIFWVIYARERRHRVYT 531 (536)
Q Consensus 501 ~~gl~~~s~~~~l~~i~Wi~~~r~~~~r~~~ 531 (536)
-+++++|.+|+||+++--++--|.+|||+..
T Consensus 59 SVAyVLVG~Gv~LLLLSICL~IR~KRr~rq~ 89 (233)
T PF15345_consen 59 SVAYVLVGSGVALLLLSICLSIRDKRRRRQG 89 (233)
T ss_pred EEEEehhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3478888888888887666555555555543
No 75
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=22.96 E-value=6.6e+02 Score=27.79 Aligned_cols=22 Identities=14% Similarity=0.480 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhch
Q 009383 264 IIVAAVMLFLAFLGFLFSVFGL 285 (536)
Q Consensus 264 iiva~vmLlL~~lGlv~si~g~ 285 (536)
+.+.+..+.+++.+++.++||+
T Consensus 350 L~Lt~gT~~~s~~~~va~ifGM 371 (414)
T KOG2662|consen 350 LLLTIGTFCLSVFSVVAGIFGM 371 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3455666777888888889886
No 76
>KOG3462 consensus Predicted membrane protein [Function unknown]
Probab=22.90 E-value=1.6e+02 Score=25.96 Aligned_cols=29 Identities=31% Similarity=0.618 Sum_probs=16.3
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 009383 276 LGFLFSVFGLQCLVYFLVILGWILVAGTFILC 307 (536)
Q Consensus 276 lGlv~si~g~r~ll~~lvilgwilv~~tWil~ 307 (536)
+|.+|+.+|+ .+-+=.+.|+++..+.|++
T Consensus 39 lgmIfsmcGl---M~r~KwCsWlAl~cs~iSf 67 (105)
T KOG3462|consen 39 LGMIFSMCGL---MFRLKWCSWLALYCSCISF 67 (105)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4445554443 1123347788887776665
No 77
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=22.66 E-value=8.3e+02 Score=24.91 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=11.0
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHH
Q 009383 252 IKDALDSVGLALIIVAAVMLFLAFLG 277 (536)
Q Consensus 252 I~~~l~~vrl~liiva~vmLlL~~lG 277 (536)
.++..+.+......+++|..+++++.
T Consensus 143 y~k~~k~~~~gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 143 YQKRQKSMYKGIGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333434444444444444443
No 78
>PF03623 Focal_AT: Focal adhesion targeting region; InterPro: IPR005189 Focal adhesion kinase (FAK) is a tyrosine kinase found in focal adhesions, intracellular signalling complexes that are formed following engagement of the extracellular matrix by integrins. The C-terminal "focal adhesion targeting" (FAT) region is necessary and sufficient for localizing FAK to focal adhesions. The crystal structure of FAT shows it forms a four-helix bundle that resembles those found in two other proteins involved in cell adhesion, alpha-catenin and vinculin []. The binding of FAT to the focal adhesion protein, paxillin, requires the integrity of the helical bundle, whereas binding to another focal adhesion protein, talin, does not.; GO: 0004713 protein tyrosine kinase activity, 0004871 signal transducer activity, 0006468 protein phosphorylation, 0007172 signal complex assembly, 0005925 focal adhesion; PDB: 1K05_C 1OW8_C 1OW7_C 3S9O_C 3B71_B 1K04_A 1OW6_C 3GM1_B 3GM3_A 3GM2_A ....
Probab=22.51 E-value=3.1e+02 Score=25.86 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=32.1
Q ss_pred HhHhHHhHHHHHHHhhhcCccc--cccCcchhhhHHHHHHHHHhhHHHHHHHHh
Q 009383 195 TSESLQNVSDYLAAAKTIGVNS--VTLAPDVQSNIDKIDRKINSSATTLSYQTK 246 (536)
Q Consensus 195 tv~~l~nVt~~l~~ak~~~v~~--~~lp~d~~~~i~~~~~~Lns~a~~i~~k~~ 246 (536)
.+.-+++|...+..+-+ .+++ ..+|.+.+..++-+.+-|++...++.+++.
T Consensus 37 y~~~VK~VG~~Lr~Ll~-sVd~~~~~l~~s~~~EVema~klL~~DM~eLi~~mk 89 (139)
T PF03623_consen 37 YVDLVKNVGLALRDLLT-SVDQILPSLPSSVRREVEMAHKLLSKDMAELISAMK 89 (139)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHGGGSHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544432 2332 235677788888888888888888877754
No 79
>PRK11677 hypothetical protein; Provisional
Probab=22.46 E-value=4.2e+02 Score=24.70 Aligned_cols=20 Identities=20% Similarity=0.472 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhheeeccccc
Q 009383 157 VFFTISAIVGCIVLYTGQGK 176 (536)
Q Consensus 157 ilft~~aI~g~~vl~~Gn~~ 176 (536)
+.|.+.+|+|..++-+++.+
T Consensus 8 i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHhhccch
Confidence 44455555566665555554
No 80
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=22.22 E-value=3.6e+02 Score=28.19 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009383 259 VGLALIIVAAVMLFLAFL 276 (536)
Q Consensus 259 vrl~liiva~vmLlL~~l 276 (536)
-++.++++.+|++++.++
T Consensus 259 ~~~~~Llil~vv~lfv~l 276 (283)
T COG5325 259 CRFYLLLILLVVLLFVSL 276 (283)
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 355555555555555444
No 81
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=21.80 E-value=1e+02 Score=29.69 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 009383 504 LFMVSAAVMLSLIFWVIYARE 524 (536)
Q Consensus 504 l~~~s~~~~l~~i~Wi~~~r~ 524 (536)
++.+++.+++.+++=++..|+
T Consensus 101 l~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 101 LVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 444455666655666665555
No 82
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=21.78 E-value=1.6e+02 Score=29.29 Aligned_cols=18 Identities=44% Similarity=0.877 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHhch
Q 009383 265 IVAAVMLFLAFLGFLFSVFGL 285 (536)
Q Consensus 265 iva~vmLlL~~lGlv~si~g~ 285 (536)
+++++++-+.++ .|++|+
T Consensus 239 ~~t~iflPlt~i---~g~fGM 256 (292)
T PF01544_consen 239 IVTAIFLPLTFI---TGIFGM 256 (292)
T ss_dssp HHHHHHHHHHHH---TTSTTS
T ss_pred HHHHHHHHHHHH---HHHhhC
Confidence 334444444433 445554
No 83
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=21.09 E-value=1.1e+02 Score=26.31 Aligned_cols=19 Identities=16% Similarity=0.725 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009383 502 IGLFMVSAAVMLSLIFWVI 520 (536)
Q Consensus 502 ~gl~~~s~~~~l~~i~Wi~ 520 (536)
++++.+.++..+.++.|.+
T Consensus 7 ~~iialiv~~iiaIvvW~i 25 (81)
T PF00558_consen 7 LAIIALIVALIIAIVVWTI 25 (81)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5777888888888899965
No 84
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=20.68 E-value=4.8e+02 Score=24.40 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=5.5
Q ss_pred hhhhHHHHHHHHH
Q 009383 107 FTAAPFFIIAGIW 119 (536)
Q Consensus 107 ftg~pg~via~lw 119 (536)
|.++-+++|..+-
T Consensus 62 f~aa~afaIisi~ 74 (155)
T PF07344_consen 62 FRAAQAFAIISIF 74 (155)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 85
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=20.06 E-value=1.8e+02 Score=28.61 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhheeeccccccccchh
Q 009383 147 TCYALSLILLVFFTISAIVGCIVLYTGQGKFHSSTL 182 (536)
Q Consensus 147 ~~~~~slillilft~~aI~g~~vl~~Gn~~fh~~~~ 182 (536)
+....-.++++++.++=++++++.+.-.+++.+.+.
T Consensus 80 ~lL~~y~~~l~l~~i~e~~~~i~~~~~~~~l~~~~~ 115 (237)
T KOG3882|consen 80 CLLLSYFILLLLLFIAELAAGILAFVFRDSLRDELE 115 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhheeHHHHHHHHH
Confidence 333444444445555555666777766666666654
Done!