Query 009383
Match_columns 536
No_of_seqs 147 out of 189
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 03:58:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hd7_A Vesicle-associated memb 80.1 4.9 0.00017 33.5 7.1 20 225-244 36-55 (91)
2 4ev6_A Magnesium transport pro 56.8 40 0.0014 33.9 9.3 21 262-285 281-301 (339)
3 2jwa_A Receptor tyrosine-prote 52.8 6.6 0.00023 28.7 1.9 40 489-528 1-41 (44)
4 2ks1_B Epidermal growth factor 52.5 3.4 0.00012 30.2 0.3 6 489-494 2-7 (44)
5 2iub_A CORA, divalent cation t 52.4 20 0.0007 36.5 6.4 21 262-285 305-325 (363)
6 3s8f_C Cytochrome C oxidase po 51.4 17 0.00057 25.1 3.6 26 99-127 6-31 (34)
7 3gm3_A Protein tyrosine kinase 45.1 61 0.0021 29.5 7.5 50 196-246 51-102 (153)
8 4aor_D Trypsin inhibitor 3; hy 44.2 9.5 0.00032 26.2 1.5 28 397-431 9-37 (37)
9 2kog_A Vesicle-associated memb 43.8 5.6 0.00019 34.9 0.4 19 191-209 37-56 (119)
10 2jp3_A FXYD domain-containing 33.6 35 0.0012 27.0 3.4 30 102-135 14-43 (67)
11 3ci9_A Heat shock factor-bindi 29.1 63 0.0022 23.9 4.0 32 224-255 12-43 (48)
12 3hd7_B Syntaxin-1A; membrane p 27.4 2.8E+02 0.0095 23.3 11.1 18 225-242 49-66 (109)
13 2l2t_A Receptor tyrosine-prote 26.6 46 0.0016 24.2 2.8 10 518-527 30-39 (44)
14 1k04_A FADK 1, focal adhesion 22.3 2.5E+02 0.0085 25.8 7.5 51 195-246 60-112 (162)
15 2jo1_A Phospholemman; FXYD1, N 22.3 85 0.0029 25.0 3.8 29 103-135 14-42 (72)
No 1
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=80.12 E-value=4.9 Score=33.51 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHhhHHHHHHH
Q 009383 225 SNIDKIDRKINSSATTLSYQ 244 (536)
Q Consensus 225 ~~i~~~~~~Lns~a~~i~~k 244 (536)
+.+++-.++|++.|....++
T Consensus 36 ~~L~~kt~~L~~~s~~F~~~ 55 (91)
T 3hd7_A 36 SELDDRADALQAGASQFETS 55 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444456666666665554
No 2
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=56.82 E-value=40 Score=33.91 Aligned_cols=21 Identities=14% Similarity=0.517 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhch
Q 009383 262 ALIIVAAVMLFLAFLGFLFSVFGL 285 (536)
Q Consensus 262 ~liiva~vmLlL~~lGlv~si~g~ 285 (536)
.+-+++++++.+. ++.|++|+
T Consensus 281 ~LTiit~IflP~T---~IaGiyGM 301 (339)
T 4ev6_A 281 ILTMVTTIFAVPM---WITGIYGM 301 (339)
T ss_dssp HHHHHHHHSSHHH---HHHHHTTC
T ss_pred HHHHHHHHHHHHH---HHHhhccC
Confidence 3444444444444 44455554
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=52.82 E-value=6.6 Score=28.68 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=17.9
Q ss_pred CCccHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHhhcchhh
Q 009383 489 HCPGLQRHSKWIYIGLFMVSAAVML-SLIFWVIYARERRHR 528 (536)
Q Consensus 489 ~C~~l~~~~~~v~~gl~~~s~~~~l-~~i~Wi~~~r~~~~r 528 (536)
.||...+.+..-.++-.++++..++ ..+.|.+|-||||.+
T Consensus 1 gCp~~~~~~~~~~Ia~~vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 1 GCPAEQRASPLTSIISAVVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp CCCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred CCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhheehhhhh
Confidence 4777655444443444333322111 113355555555543
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=52.50 E-value=3.4 Score=30.17 Aligned_cols=6 Identities=33% Similarity=0.700 Sum_probs=3.0
Q ss_pred CCccHH
Q 009383 489 HCPGLQ 494 (536)
Q Consensus 489 ~C~~l~ 494 (536)
.||+..
T Consensus 2 gCp~~~ 7 (44)
T 2ks1_B 2 GCPTNG 7 (44)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 466543
No 5
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=52.43 E-value=20 Score=36.50 Aligned_cols=21 Identities=29% Similarity=0.752 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhch
Q 009383 262 ALIIVAAVMLFLAFLGFLFSVFGL 285 (536)
Q Consensus 262 ~liiva~vmLlL~~lGlv~si~g~ 285 (536)
.+-+++++++.+.++ .|++|+
T Consensus 305 ~LTiit~IflP~T~I---aGiyGM 325 (363)
T 2iub_A 305 VLTIIATIFMPLTFI---AGIYGM 325 (363)
T ss_dssp HHHHHHHHHHHHHHH---TTSCC-
T ss_pred HHHHHHHHHHHHHHH---Hhhhcc
Confidence 444455555555544 444443
No 6
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=51.37 E-value=17 Score=25.13 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=18.2
Q ss_pred hhhHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 009383 99 KHYWASVGFTAAPFFIIAGIWFVVFGLSL 127 (536)
Q Consensus 99 ~hY~aSv~ftg~pg~via~lwfl~fgl~l 127 (536)
+.=|+|+++.|+ .|.+.|+.+|++++
T Consensus 6 ~GTl~~V~ilg~---~I~i~W~~vf~lFl 31 (34)
T 3s8f_C 6 KGALAVILVLTL---TILVFWLGVYAVFF 31 (34)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred cceehHHHHHHH---HHHHHHHHHHeeee
Confidence 455777777774 77899986666543
No 7
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=45.13 E-value=61 Score=29.55 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=32.7
Q ss_pred hHhHHhHHHHHHHhhhcCccc--cccCcchhhhHHHHHHHHHhhHHHHHHHHh
Q 009383 196 SESLQNVSDYLAAAKTIGVNS--VTLAPDVQSNIDKIDRKINSSATTLSYQTK 246 (536)
Q Consensus 196 v~~l~nVt~~l~~ak~~~v~~--~~lp~d~~~~i~~~~~~Lns~a~~i~~k~~ 246 (536)
++-+++|...+..+-+ .|++ ..+|.+.+..|+-+.+-|++...++..+++
T Consensus 51 ~~lVK~VGl~LR~Ll~-sVd~~~~~lp~s~~~EIema~k~L~kDM~eLIs~Mk 102 (153)
T 3gm3_A 51 VVVVKNVGLTLRKLIG-SVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKMR 102 (153)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544432 2332 346777888888888999998888877755
No 8
>4aor_D Trypsin inhibitor 3; hydrolase-inhibitor complex, miniprotein scaffold, knottins, protease inhibitor; HET: GOL MES; 1.70A {Spinacia oleracea} PDB: 4aoq_D*
Probab=44.21 E-value=9.5 Score=26.15 Aligned_cols=28 Identities=25% Similarity=0.756 Sum_probs=18.6
Q ss_pred cccCCCCCCCCcccCCCCc-ccccchhhhhccceec
Q 009383 397 VLCNPFNSDLTNRQCVASE-VDFSNATEVWKNYICQ 431 (536)
Q Consensus 397 ~lCnPf~~~~~~~~C~~ge-v~~~~a~~v~~~~~C~ 431 (536)
.+|.||++ +++|-+|. |+- -.+.-|+|+
T Consensus 9 ~ic~~f~~---p~~ccsg~cvph----p~lrifvc~ 37 (37)
T 4aor_D 9 AICSGFGP---PEQCCSGACVPH----PILRIFVCQ 37 (37)
T ss_dssp CEECTTSC---GGGBTTSCEEEC----SSBSSEEEC
T ss_pred CccCCCCC---ccccccccccCC----CeeEEEeeC
Confidence 59999998 77888776 332 344556663
No 9
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=43.78 E-value=5.6 Score=34.88 Aligned_cols=19 Identities=5% Similarity=0.141 Sum_probs=8.6
Q ss_pred hhhHHhHhHHhH-HHHHHHh
Q 009383 191 QAHITSESLQNV-SDYLAAA 209 (536)
Q Consensus 191 ~an~tv~~l~nV-t~~l~~a 209 (536)
+.+.-+++++++ .+.++.+
T Consensus 37 ~vq~evdeVk~IM~~NIdkv 56 (119)
T 2kog_A 37 QTQAQVDEVVDIMRVNVDKV 56 (119)
T ss_dssp HSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 333344455543 4555543
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=33.61 E-value=35 Score=26.97 Aligned_cols=30 Identities=23% Similarity=0.605 Sum_probs=17.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009383 102 WASVGFTAAPFFIIAGIWFVVFGLSLCFMCLHYC 135 (536)
Q Consensus 102 ~aSv~ftg~pg~via~lwfl~fgl~lL~~~~c~C 135 (536)
|+++=.-| +++|++.|+ .|+++++.-=|+|
T Consensus 14 Y~tLRigG---LifA~vLfi-~GI~iilS~kcrC 43 (67)
T 2jp3_A 14 WESLQLGG---LIFGGLLCI-AGIALALSGKCKC 43 (67)
T ss_dssp GHHHHHHH---HHHHHHHHH-HHHHHHHTTHHHH
T ss_pred hHHheecc---hhhHHHHHH-HHHHHHHcCcccc
Confidence 36665544 577888865 4766655323444
No 11
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=29.06 E-value=63 Score=23.88 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHhhhHHHHHHh
Q 009383 224 QSNIDKIDRKINSSATTLSYQTKKNSKDIKDA 255 (536)
Q Consensus 224 ~~~i~~~~~~Lns~a~~i~~k~~~n~~~I~~~ 255 (536)
++-+++.+.+.+...++|..|+.+..++|++.
T Consensus 12 q~LL~qmq~kFq~mS~~I~~riDdM~~RIDdL 43 (48)
T 3ci9_A 12 QTLLQQMQDKFQTISDQIIGRIDDMSSRIDDL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45577888899999999999988888887653
No 12
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=27.43 E-value=2.8e+02 Score=23.33 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHhhHHHHH
Q 009383 225 SNIDKIDRKINSSATTLS 242 (536)
Q Consensus 225 ~~i~~~~~~Lns~a~~i~ 242 (536)
..+|+++..+..+.+++.
T Consensus 49 e~Id~Ie~nv~~a~~~v~ 66 (109)
T 3hd7_B 49 EMIDRIEYNVEHAVDYVE 66 (109)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 336677666666666654
No 13
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=26.58 E-value=46 Score=24.18 Aligned_cols=10 Identities=20% Similarity=0.670 Sum_probs=3.8
Q ss_pred HHHHhhcchh
Q 009383 518 WVIYARERRH 527 (536)
Q Consensus 518 Wi~~~r~~~~ 527 (536)
|.+|-|+||+
T Consensus 30 ~~~~~RRRr~ 39 (44)
T 2l2t_A 30 FAVYVRRKSI 39 (44)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHhhhhhh
Confidence 3333444333
No 14
>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical bundle forming A helix-exchange transferase; 1.95A {Homo sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A 1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A
Probab=22.32 E-value=2.5e+02 Score=25.78 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=33.7
Q ss_pred HhHhHHhHHHHHHHhhhcCccc--cccCcchhhhHHHHHHHHHhhHHHHHHHHh
Q 009383 195 TSESLQNVSDYLAAAKTIGVNS--VTLAPDVQSNIDKIDRKINSSATTLSYQTK 246 (536)
Q Consensus 195 tv~~l~nVt~~l~~ak~~~v~~--~~lp~d~~~~i~~~~~~Lns~a~~i~~k~~ 246 (536)
-+.-+++|...|..+-. .|++ -.+|.+.+..++-..+-|++...++.++++
T Consensus 60 y~~~VK~VGl~LR~Ll~-sVd~~~~~lp~s~~rEVema~k~L~kDM~eLis~mk 112 (162)
T 1k04_A 60 YVPMVKEVGLALRTLLA-TVDETIPLLPASTHREIEMAQKLLNSDLGELINKMK 112 (162)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hHhhhhhccCHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666655442 3432 236777778888888888888888877755
No 15
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=22.28 E-value=85 Score=25.05 Aligned_cols=29 Identities=28% Similarity=0.591 Sum_probs=16.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009383 103 ASVGFTAAPFFIIAGIWFVVFGLSLCFMCLHYC 135 (536)
Q Consensus 103 aSv~ftg~pg~via~lwfl~fgl~lL~~~~c~C 135 (536)
+++=.-| +++|++.|+ .|+++++.==|+|
T Consensus 14 ~tLRiGG---LifA~vLfi-~GI~iilS~KckC 42 (72)
T 2jo1_A 14 QSLQIGG---LVIAGILFI-LGILIVLSRRCRC 42 (72)
T ss_dssp HHHHHHH---HHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHhhccc---hHHHHHHHH-HHHHHHHcCcccc
Confidence 5554444 577888865 4666555322444
Done!