BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009384
(536 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GG4|A Chain A, The Crystal Structure Of Glycerol Kinase From Yersinia
Pseudotuberculosis
pdb|3GG4|B Chain B, The Crystal Structure Of Glycerol Kinase From Yersinia
Pseudotuberculosis
pdb|3L0Q|A Chain A, The Crystal Structure Of Xlylulose Kinase From Yersinia
Pseudotuberculosis
pdb|3L0Q|B Chain B, The Crystal Structure Of Xlylulose Kinase From Yersinia
Pseudotuberculosis
Length = 554
Score = 434 bits (1115), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/462 (47%), Positives = 302/462 (65%), Gaps = 24/462 (5%)
Query: 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSA 113
S F+GVDVGTGSARAG+FD G+ +G AS I +K + D +EQSS +IW A+C AV A
Sbjct: 5 SYFIGVDVGTGSARAGVFDLQGRXVGQASREITXFKPKADFVEQSSENIWQAVCNAVRDA 64
Query: 114 CSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKIN 173
+ A+++ +VKG+GF ATCSLV +D +G+P++VS +G + +N+IVW DHRA+ QAE+IN
Sbjct: 65 VNQADINPIQVKGLGFDATCSLVVLDKEGNPLTVSPSGRNEQNVIVWXDHRAITQAERIN 124
Query: 174 SRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLC 233
+ PVL++ GG +SPE Q PKLLW+K++ +WS V DL D+L++RAT D+TRSLC
Sbjct: 125 ATKHPVLEFVGGVISPEXQTPKLLWLKQHXPNTWSNVGHLFDLPDFLTWRATKDETRSLC 184
Query: 234 TTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 293
+TVCKWTYLGH WD +++ +GL DL+D + AKIG +V G
Sbjct: 185 STVCKWTYLGHEDR---------------WDPSYFKLVGLADLLDNNAAKIGATVKPXGA 229
Query: 294 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXXXXXXXXXXXXICHRMV 353
PLG GL+ AA E GL+PGT V S+IDAHAG +G++ + R+
Sbjct: 230 PLGHGLSQRAASEXGLIPGTAVSVSIIDAHAGTIGILGA------SGVTGENANFDRRIA 283
Query: 354 LVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVXXXX 413
L+ GTST H A SR+ FI G+WGP++SA++P++WL EGGQSATGAL+D+II++H
Sbjct: 284 LIGGTSTAHXAXSRSAHFISGIWGPYYSAILPEYWLNEGGQSATGALIDHIIQSHPCYPA 343
Query: 414 XXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGI 473
+++E LN L E + +A LT DIH LP FHGNRSP A+P GI
Sbjct: 344 LLEQAKNKGETIYEALNYILRQXAGEPEN--IAFLTNDIHXLPYFHGNRSPRANPNLTGI 401
Query: 474 ICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKV 515
I G+ L ++ + AL YLAT+Q +A GTRHI+E N +G+ +
Sbjct: 402 ITGLKLSTTPEDXALRYLATIQALALGTRHIIETXNQNGYNI 443
>pdb|3QDK|A Chain A, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
pdb|3QDK|B Chain B, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
pdb|3QDK|C Chain C, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
pdb|3QDK|D Chain D, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
Length = 572
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 119/507 (23%), Positives = 207/507 (40%), Gaps = 76/507 (14%)
Query: 58 LGVDVGTGSARAGLFDES-GKLLGSASSP-----IQIWKEGDCIE-------QSSTDIWH 104
+GVD GT S RA L D S G+ L +P I + I+ Q D
Sbjct: 8 IGVDYGTESGRAVLIDLSNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDYVE 67
Query: 105 AICAAVDSACSLANVDGEEVKGVGFAAT-CSLVAVDADGSPVSV--SWNGDSRRNIIVWM 161
+ +V + + VD ++V G+G T C+++ VD +G P+ + + + + +W
Sbjct: 68 VLTTSVPAVMKESGVDADDVIGIGVDFTACTMLPVDEEGQPLCLLAQYKDNPHSWVKLWK 127
Query: 162 DHRAVKQAEKIN----SRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLS 217
H A +A IN R L GG +S E K+ + + ++ ++ ++++ +
Sbjct: 128 HHAAQDKANAINEMAEKRGEAFLPRYGGKISSEWMIAKVWQILDEAEDVYNRTDQFLEAT 187
Query: 218 DWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLI 277
DW+ + TG ++ CT K + +G+ E D E + L
Sbjct: 188 DWIVSQMTGKIVKNSCTAGYKAIW--------HKREGYPSNEFFKALDPRLEHLTTTKL- 238
Query: 278 DGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXX 337
R P GL P A+++GL PG V +DAHA V + P
Sbjct: 239 --------RGDIVPLGERAGGLLPEMAEKMGLNPGIAVAVGNVDAHAAVPAVGVTTPG-- 288
Query: 338 XXXXXXXXXXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSAT 397
++V+ GTS CHM + + + G+ G ++P + E GQSA
Sbjct: 289 -------------KLVMAMGTSICHMLLGEKEQEVEGMCGVVEDGIIPGYLGYEAGQSAV 335
Query: 398 GALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPD 457
G + + ++ H V++ LL S + S +A L
Sbjct: 336 GDIFAWFVK-HGVSAATFDEAQEKGVNVHALLEEK-ASQLRPGESGLLA--------LDW 385
Query: 458 FHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVRE 517
++GNRS + D + G++ G TL + ++ +Y A ++ A+GTR IV+ + G +V E
Sbjct: 386 WNGNRSILVDTELSGMLLGYTLQTKPEE---IYRALLEATAFGTRAIVDAFHGRGVEVHE 442
Query: 518 -----------HIFHSVFYLSQSRTVR 533
H+ +F +R ++
Sbjct: 443 LYACGGLPQKNHLLMQIFADVTNREIK 469
>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
pdb|2ZF5|Y Chain Y, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
Length = 497
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 108/462 (23%), Positives = 167/462 (36%), Gaps = 88/462 (19%)
Query: 58 LGVDVGTGSARAGLFDESGKL--LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACS 115
L +D GT SARA +FD + +G P Q + +E + +IW A A+ A
Sbjct: 6 LSLDEGTTSARAIIFDRESNIHGIGQYEFP-QHYPRPGWVEHNPEEIWDAQLRAIKDAIQ 64
Query: 116 LANVDGEEVKGVGFAATCSLVAV-DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINS 174
A ++ ++ +G V D DG P+ N IVW R + E+I
Sbjct: 65 SARIEPNQIAAIGVTNQRETTLVWDKDGKPLY---------NAIVWQCRRTAEMVEEIKR 115
Query: 175 RNSPVLQYCGGAV-SPEMQPPKLLWVKENL------QESWSMVFRWMDLSDWLSYRATGD 227
+++ G V KL W+ +N+ E ++F +D +L YR TG+
Sbjct: 116 EYGTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKAEKGEVMFGTVDT--FLIYRLTGE 173
Query: 228 DTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRS 287
Y + N ++ WDDE E L D+ + ++ S
Sbjct: 174 HVTD---------YSNASRTMLFN------IKKLDWDDELLE---LFDIPESVLPEVRES 215
Query: 288 VAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXXXXXXXXXXXX 347
G+ KEL L PV D A G
Sbjct: 216 SEVYGY---------TKKEL-LGAEIPVSGDAGDQQAALFG------QAAFEAGMVKATY 259
Query: 348 ICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIEN 407
+LV +T M + + L WG + V + EG TGA + ++ +
Sbjct: 260 GTGSFILV---NTDKMVLYSDNLLTTIAWG--LNGRVS--YALEGSIFVTGAAVQWLRDG 312
Query: 408 HVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIAD 467
H S E L LES E ++ +P F G +P D
Sbjct: 313 ---------IKIIKHASETEELATKLES-------------NEGVYFVPAFVGLGAPYWD 350
Query: 468 PKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCN 509
++GII G+T + + LA AT++ IAY TR +V+
Sbjct: 351 QFARGIIIGITRGTGREHLA---RATLEAIAYLTRDVVDEME 389
>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
pdb|2D4W|B Chain B, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
Length = 504
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 97/469 (20%), Positives = 171/469 (36%), Gaps = 91/469 (19%)
Query: 58 LGVDVGTGSARAGLFDESGKLLGSAS-SPIQIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
L +D GT S+RA +FD SG++ + QI+ +E + IW+ + V A +
Sbjct: 5 LAIDQGTTSSRAIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTR 64
Query: 117 ANVDGEEVKGVGFAATCSLVAV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINS 174
N+ E++ VG V G PV N IVW D R K +++
Sbjct: 65 GNLTHEDIAAVGITNQRETAVVWDKTTGKPV---------YNAIVWQDTRTQKIVDELGG 115
Query: 175 RN--SPVLQYCGGAVSPEMQPPKLLWVKENLQ------ESWSMVFRWMDLSDWLSYRATG 226
G ++ PK+ W+ +N++ E ++F D W+ + TG
Sbjct: 116 DEGAEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEKGDLLFGNTDT--WVLWNMTG 173
Query: 227 DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIG--LGDLIDGHHAKI 284
+ T + + D++ W ++ ++G L L D I
Sbjct: 174 GTEGGVHVT----------DVTNASRTMLMDLDTLSWREDIAADMGIPLSMLPD-----I 218
Query: 285 GRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXXXXXXXXX 344
S GH + GLVPG P+ L D A G
Sbjct: 219 RSSSEVYGH----------GRPRGLVPGVPIAGILGDQQAATFG-----QACFEVGQAKN 263
Query: 345 XXXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYI 404
+ ++L GT +S+N L + P + EG + TG+L+ ++
Sbjct: 264 TYGTGNFLLLNTGTEKV---MSKNGLLTTVC---YKIGDAPAVYALEGSIAVTGSLVQWL 317
Query: 405 IENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTED---IHVLPDFHGN 461
+N + +FE + ++A +D + +P F G
Sbjct: 318 RDN---------------LGMFE----------DAPDVEWLAGKVQDNGGAYFVPAFSGL 352
Query: 462 RSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 510
+P P ++G + G+T + +A A ++ A+ +R +V+ NA
Sbjct: 353 FAPYWRPDARGALVGLTRYVNRNHIA---RAALEATAFQSREVVDAMNA 398
>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase
pdb|1R59|X Chain X, Enterococcus Casseliflavus Glycerol Kinase
Length = 505
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 72/156 (46%), Gaps = 14/156 (8%)
Query: 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDS 112
++ + +D GT S+RA +FD +GK +GS+ Q + + +E ++ +IW+++ + +
Sbjct: 3 KNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAG 62
Query: 113 ACSLANVDGEEVKGVGFAATCSLVAV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE 170
A + + E + G+G V G P++ N IVW ++ A+
Sbjct: 63 AFIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIA---------NAIVWQSRQSSPIAD 113
Query: 171 --KINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQ 204
K++ + + G + K+ W+ +N++
Sbjct: 114 QLKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIE 149
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 451 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE 506
+++V+P F G +P D +++G + G+T ++++ AT+Q +AY ++ +++
Sbjct: 341 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVID 393
>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol
pdb|3H3N|O Chain O, Glycerol Kinase H232r With Glycerol
pdb|3H3O|O Chain O, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|X Chain X, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|B Chain B, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|C Chain C, Glycerol Kinase H232r With Ethylene Glycol
Length = 506
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 72/156 (46%), Gaps = 14/156 (8%)
Query: 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDS 112
++ + +D GT S+RA +FD +GK +GS+ Q + + +E ++ +IW+++ + +
Sbjct: 4 KNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAG 63
Query: 113 ACSLANVDGEEVKGVGFAATCSLVAV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE 170
A + + E + G+G V G P++ N IVW ++ A+
Sbjct: 64 AFIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIA---------NAIVWQSRQSSPIAD 114
Query: 171 --KINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQ 204
K++ + + G + K+ W+ +N++
Sbjct: 115 QLKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIE 150
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 451 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE 506
+++V+P F G +P D +++G + G+T ++++ AT+Q +AY ++ +++
Sbjct: 342 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVID 394
>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
pdb|3FLC|X Chain X, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
Length = 518
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 72/156 (46%), Gaps = 14/156 (8%)
Query: 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDS 112
++ + +D GT S+RA +FD +GK +GS+ Q + + +E ++ +IW+++ + +
Sbjct: 16 KNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAG 75
Query: 113 ACSLANVDGEEVKGVGFAATCSLVAV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE 170
A + + E + G+G V G P++ N IVW ++ A+
Sbjct: 76 AFIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIA---------NAIVWQSRQSSPIAD 126
Query: 171 --KINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQ 204
K++ + + G + K+ W+ +N++
Sbjct: 127 QLKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIE 162
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 451 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE 506
+++V+P F G +P D +++G + G+T ++++ AT+Q +AY ++ +++
Sbjct: 354 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVID 406
>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|O Chain O, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|C Chain C, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|D Chain D, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H46|X Chain X, Glycerol Kinase H232e With Glycerol
pdb|3H46|O Chain O, Glycerol Kinase H232e With Glycerol
Length = 506
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 72/156 (46%), Gaps = 14/156 (8%)
Query: 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDS 112
++ + +D GT S+RA +FD +GK +GS+ Q + + +E ++ +IW+++ + +
Sbjct: 4 KNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAG 63
Query: 113 ACSLANVDGEEVKGVGFAATCSLVAV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE 170
A + + E + G+G V G P++ N IVW ++ A+
Sbjct: 64 AFIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIA---------NAIVWQSRQSSPIAD 114
Query: 171 --KINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQ 204
K++ + + G + K+ W+ +N++
Sbjct: 115 QLKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIE 150
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 451 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE 506
+++V+P F G +P D +++G + G+T ++++ AT+Q +AY ++ +++
Sbjct: 342 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVID 394
>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
pdb|3D7E|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
Length = 505
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 72/156 (46%), Gaps = 14/156 (8%)
Query: 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDS 112
++ + +D GT S+RA +FD +GK +GS+ Q + + +E ++ +IW+++ + +
Sbjct: 3 KNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAG 62
Query: 113 ACSLANVDGEEVKGVGFAATCSLVAV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE 170
A + + E + G+G V G P++ N IVW ++ A+
Sbjct: 63 AFIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIA---------NAIVWQSRQSSPIAD 113
Query: 171 --KINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQ 204
K++ + + G + K+ W+ +N++
Sbjct: 114 QLKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIE 149
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 451 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE 506
+++V+P F G +P D +++G + G+T ++++ AT+Q +AY ++ +++
Sbjct: 341 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVID 393
>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
pdb|1XUP|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
Length = 487
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 70/152 (46%), Gaps = 14/152 (9%)
Query: 58 LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
+ +D GT S+RA +FD +GK +GS+ Q + + +E ++ +IW+++ + + A
Sbjct: 3 MAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE 62
Query: 117 ANVDGEEVKGVGFAATCSLVAV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE--KI 172
+ + E + G+G V G P++ N IVW ++ A+ K+
Sbjct: 63 SGIRPEAIAGIGITNQRETTVVWDKTTGQPIA---------NAIVWQSRQSSPIADQLKV 113
Query: 173 NSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQ 204
+ + + G + K+ W+ +N++
Sbjct: 114 DGHTEMIHEKTGLVIDAYFSATKVRWLLDNIE 145
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 451 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE 506
+++V+P F G +P D +++G + G+T ++++ AT+Q +AY ++ +++
Sbjct: 337 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVID 389
>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
pdb|2DPN|B Chain B, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
Length = 495
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 84/231 (36%), Gaps = 37/231 (16%)
Query: 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSA 113
+ L +D GT S+RA LF G+ + A Q++ + +E +IW A
Sbjct: 2 AFLLALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREV 61
Query: 114 CSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWN---GDSRRNIIVWMDHRAVKQAE 170
A + EV +G + ++ W+ G N IVW D R E
Sbjct: 62 LRRAGAEAGEVLALGIT----------NQRETTLLWDRKTGKPLHNAIVWQDRRTTPLCE 111
Query: 171 KINSRN-SPVL-QYCGGAVSPEMQPPKLLWVKENL------QESWSMVFRWMDLSDWLSY 222
+ ++ P+ + G P KL+W+ EN+ E + F +D WL +
Sbjct: 112 ALRAKGLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAEGGGVAFGTVD--TWLIW 169
Query: 223 RATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGL 273
TG + T T L + H WD E E +G+
Sbjct: 170 NLTGGKVHATDPTNASRTLLFNLH-------------TLAWDPELLEALGI 207
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
T D++ +P F G +P DP ++G + G+T +S LA A ++G+A+ R +V
Sbjct: 335 TGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLA---RAALEGVAFQVRDVVLAM 391
Query: 509 NAHGHKVREHIFHSVFYLSQSR 530
VR + + ++Q+R
Sbjct: 392 EEEAG-VRLKVLKADGGMAQNR 412
>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2ITM|B Chain B, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2NLX|A Chain A, Crystal Structure Of The Apo E. Coli Xylulose Kinase
pdb|2NLX|B Chain B, Crystal Structure Of The Apo E. Coli Xylulose Kinase
Length = 484
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 23/179 (12%)
Query: 56 VFLGVDVGTGSARAGLFDESGKLLG------SASSPIQIWKEGDCIEQSSTDIWHAICAA 109
+++G+D+GT + L +E G+++ + S P +W E Q W A A
Sbjct: 1 MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSE-----QDPEQWWQATDRA 55
Query: 110 VDSACSLANVDGEEVKGVGFAATC-SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQ 168
+ + ++ ++VK +G A +DA + R I+W D R ++
Sbjct: 56 MKALGDQHSL--QDVKALGIAGQMHGATLLDAQQRVL---------RPAILWNDGRCAQE 104
Query: 169 AEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGD 227
+ +R G + P PKLLWV+ + E + + + + D+L R TG+
Sbjct: 105 CTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGE 163
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 450 EDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCN 509
E + LP G R+P +P++KG+ G+T +LA A ++G+ Y ++ +
Sbjct: 325 EPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELA---RAVLEGVGYALADGMDVVH 381
Query: 510 AHGHK 514
A G K
Sbjct: 382 ACGIK 386
>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|B Chain B, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|C Chain C, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|D Chain D, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
Length = 520
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 14/153 (9%)
Query: 57 FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACS 115
L +D GT S RA +FD + K+ G Q + + +E +IW + + V A
Sbjct: 28 ILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIE 87
Query: 116 LANVDGEEVKGVGFAATCSLVAV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKIN 173
+ + ++ +G V V G P+ N IVW D R +K+
Sbjct: 88 KSGITANDIAAIGITNQRETVVVWDRETGKPI---------HNAIVWQDRRTAAFCDKLK 138
Query: 174 SR--NSPVLQYCGGAVSPEMQPPKLLWVKENLQ 204
+ ++ G + P KL W+ N++
Sbjct: 139 KKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVK 171
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE 506
+++++++P F G +P DP ++G I G T ++ + A A ++ + Y TR ++E
Sbjct: 360 SQEVYLVPAFTGLGAPHWDPDARGAIFGXTRNTGPAEFA---RAALEAVCYQTRDLLE 414
>pdb|3HZ6|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
pdb|3KZB|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
Length = 511
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 109/280 (38%), Gaps = 44/280 (15%)
Query: 61 DVGTGSARAGLFDESGKLLGSASSPIQIWKEGDC-IEQSSTDIWHAICAAVDSACSLANV 119
D+GT +A L D G L S ++ + +G+ +EQ + D W+ + S+ + V
Sbjct: 11 DIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGD-WYDAVQRIASSWWQSGV 69
Query: 120 DGEEVKGVGFAATC-SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSP 178
D V + + + + +D D P+ +++ D R +K+AE+IN+R+
Sbjct: 70 DARRVSAIVLSGQXQNFLPLDQDHEPL---------HRAVLYSDKRPLKEAEEINARHGA 120
Query: 179 -----VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLC 233
L+ A S + P + W Q + + D++ R TG
Sbjct: 121 DNLWSALENPXTAAS--ILPKLVFWRASFPQAFGRLRHVVLGAKDYVVLRLTGRHATDRT 178
Query: 234 TTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 293
Y D+ W L D G + + PG
Sbjct: 179 NASTTGLYRPK--------------------DDAWHVELLADY--GFSLDLXPRLLEPGE 216
Query: 294 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GVGVME 331
+G G++ AA++ G V GTPV L DA A GVGV++
Sbjct: 217 QVG-GVSALAARQTGFVSGTPVLCGLGDAGAATLGVGVLD 255
>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus
Acidophilus
pdb|3LL3|A Chain A, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
pdb|3LL3|B Chain B, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
Length = 504
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 18/179 (10%)
Query: 53 SRSVFLGVDVGTGSARAGLFDESGKLLGSASS--PIQIWKEGDCIEQSSTDIWHAICAAV 110
S +G DVGT + + L+D +GK + S S P+ K G E+ I+ A+ +
Sbjct: 2 SLKYIIGXDVGTTATKGVLYDINGKAVASVSKGYPLIQTKVGQA-EEDPKLIFDAVQEII 60
Query: 111 DSACSLANVDGEEVKGVGFAATC-SLVAVDADGSPVSVSWNGDSRRNIIVWMDH--RAVK 167
+DG+ + + +++ SL+ + +D ++ N I W D+ +++
Sbjct: 61 FDLTQ--KIDGK-IAAISWSSQXHSLIGLGSDDELLT---------NSITWADNCAKSIV 108
Query: 168 QAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATG 226
Q K + + G P KLLW+K E +S +W+ + +++ +R TG
Sbjct: 109 QDAKNRGFAQQIYRKTGXPXHPXAPIYKLLWLKNKKTEVFSQAQKWIGIKEYIIFRLTG 167
>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|B Chain B, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|C Chain C, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|D Chain D, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3GE1|A Chain A, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|B Chain B, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|C Chain C, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|D Chain D, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
Length = 501
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 78/181 (43%), Gaps = 24/181 (13%)
Query: 58 LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
L +D GT S+RA LF++ G++ G A Q + + +E + +IW ++ A +
Sbjct: 9 LSIDQGTTSSRAILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVXTEVINE 68
Query: 117 ANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNI---IVWMDHRAVKQAEKIN 173
+V +++ G+G + +V W+ + R I IVW + ++
Sbjct: 69 NDVRADQIAGIGI----------TNQRETTVVWDKHTGRPIYHAIVWQSRQTQSICSELK 118
Query: 174 SR--NSPVLQYCGGAVSPEMQPPKLLWVKENLQ------ESWSMVFRWMDLSDWLSYRAT 225
+ G + P K+ W+ +N++ E+ ++F +D WL ++ +
Sbjct: 119 QQGYEQTFRDKTGLLLDPYFAGTKVKWILDNVEGAREKAENGDLLFGTIDT--WLVWKLS 176
Query: 226 G 226
G
Sbjct: 177 G 177
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE 506
TE ++V+P F G +P D +++G I G+T + ++ AT++ + Y TR + E
Sbjct: 341 TEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFI---RATLESLCYQTRDVXE 395
>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
Length = 501
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
T ++V+P F G +P DP ++G I G+T + + AT++ IAY TR ++E
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANH---IIRATLESIAYQTRDVLEAM 395
Query: 509 NA 510
A
Sbjct: 396 QA 397
>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
T ++V+P F G +P DP ++G I G+T + + AT++ IAY TR ++E
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANH---IIRATLESIAYQTRDVLEAM 395
Query: 509 NA 510
A
Sbjct: 396 QA 397
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 14/159 (8%)
Query: 53 SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVD 111
+ + +D GT S+RA + D ++ + QI+ + +E +IW + +
Sbjct: 2 EKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLV 61
Query: 112 SACSLANVDGEEVKGVGFAAT--CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQA 169
+ A++ +++ +G ++V G P+ N IVW R +
Sbjct: 62 EVLTKADISSDQIAAIGITNQRETTIVWEKETGKPIY---------NAIVWQCRRTAEIC 112
Query: 170 E--KINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQES 206
E K + + G + P K+ W+ ++++ S
Sbjct: 113 EHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGS 151
>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLB|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLC|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLD|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLE|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate
Length = 501
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
T ++V+P F G +P DP ++G I G+T + + AT++ IAY TR ++E
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANH---IIRATLESIAYQTRDVLEAM 395
Query: 509 NA 510
A
Sbjct: 396 QA 397
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 14/159 (8%)
Query: 53 SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVD 111
+ + +D GT S+RA + D ++ + QI+ + +E +IW + +
Sbjct: 2 EKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLV 61
Query: 112 SACSLANVDGEEVKGVGFAAT--CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQA 169
+ A++ +++ +G ++V G P+ N IVW R +
Sbjct: 62 EVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIY---------NAIVWQCRRTAEIC 112
Query: 170 E--KINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQES 206
E K + + G + P K+ W+ ++++ S
Sbjct: 113 EHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGS 151
>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|B Chain B, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|E Chain E, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|G Chain G, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|C Chain C, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|D Chain D, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|F Chain F, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|H Chain H, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
Length = 526
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
T ++V+P F G +P DP ++G I G+T + + AT++ IAY TR ++E
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANH---IIRATLESIAYQTRDVLEAM 395
Query: 509 NA 510
A
Sbjct: 396 QA 397
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 14/159 (8%)
Query: 53 SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVD 111
+ + +D GT S+RA + D ++ + QI+ + +E +IW + +
Sbjct: 2 EKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLV 61
Query: 112 SACSLANVDGEEVKGVGFAAT--CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQA 169
+ A++ +++ +G ++V G P+ N IVW R +
Sbjct: 62 EVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIY---------NAIVWQCRRTAEIC 112
Query: 170 E--KINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQES 206
E K + + G + P K+ W+ ++++ S
Sbjct: 113 EHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGS 151
>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
pdb|3IFR|B Chain B, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
Length = 508
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 383 MVPKFWLTEGGQSATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNS 442
+VP + G +ATG+ L+++ + E + L+++ E
Sbjct: 290 LVPGLYAPNGCXAATGSALNWLAKLLAPEAG-------------EAAHAQLDALAAE--- 333
Query: 443 PFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTR 502
V A + + LP F G ++PI DP + G G++L + L+ A ++ +A R
Sbjct: 334 --VPAGADGLVCLPYFLGEKTPIHDPFASGTFTGLSLSHTRGH---LWRALLEAVALAFR 388
Query: 503 HIVEHCNAHGH 513
H V + GH
Sbjct: 389 HHVAVLDDIGH 399
>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3T|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3U|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3U|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3V|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|1V3V|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|2DM6|A Chain A, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
pdb|2DM6|B Chain B, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
Length = 333
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 208 SMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEAC 261
S++++ + + ++ YR GD + KW G + KGF +M A
Sbjct: 263 SIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEHVTKGFENMPAA 316
>pdb|3VGK|A Chain A, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus
pdb|3VGK|B Chain B, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus
pdb|3VGK|C Chain C, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus
pdb|3VGK|D Chain D, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus
pdb|3VGK|E Chain E, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus
pdb|3VGK|F Chain F, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus
pdb|3VGK|G Chain G, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus
pdb|3VGK|H Chain H, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus
pdb|3VGL|A Chain A, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus In Complex With Glucose And Amppnp
pdb|3VGM|A Chain A, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus In Complex With Glucose
Length = 321
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA 117
+GVD+G AG+ DE G++L + EG I AICAAV A
Sbjct: 5 IGVDIGGTKIAAGVVDEEGRILSTFKVATPPTAEG---------IVDAICAAVAGAS--- 52
Query: 118 NVDGEEVKGVGFAAT 132
+G +V+ VG A
Sbjct: 53 --EGHDVEAVGIGAA 65
>pdb|2YHW|A Chain A, High-Resolution Crystal Structures Of N-Acetylmannosamine
Kinase: Insights About Substrate Specificity, Activity
And Inhibitor Modelling
Length = 343
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 20/117 (17%)
Query: 121 GEEVKGVGFAATCSLVAVDADGSPVSV---SWNGD--------------SRRNIIVWMDH 163
G ++ + F T S +AVD G+ + V S G+ R N+I+ M
Sbjct: 18 GSHMENLYFQGTLSALAVDLGGTNLRVAIVSMKGEIVKKYTQFNPKTYEERINLILQMCV 77
Query: 164 RAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWL 220
A +A K+N R V GG V+P ++ L + W+ V LSD L
Sbjct: 78 EAAAEAVKLNCRILGVGISTGGRVNPR---EGIVLHSTKLIQEWNSVDLRTPLSDTL 131
>pdb|3IX1|A Chain A, Periplasmic
N-Formyl-4-Amino-5-Aminomethyl-2-Methylpyrimidine
Binding Protein From Bacillus Halodurans
pdb|3IX1|B Chain B, Periplasmic
N-Formyl-4-Amino-5-Aminomethyl-2-Methylpyrimidine
Binding Protein From Bacillus Halodurans
Length = 302
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 205 ESWSMVFRWMDLSDWLSYRATGDDTRSLCT 234
ESW V W+D DWL +D S T
Sbjct: 272 ESWEEVISWLDAHDWLEQPVVAEDAFSSIT 301
>pdb|2YHY|A Chain A, Structure Of N-Acetylmannosamine Kinase In Complex With N-
Acetylmannosamine And Adp
pdb|2YI1|A Chain A, Crystal Structure Of N-Acetylmannosamine Kinase In Complex
With N-Acetyl Mannosamine 6-Phosphate And Adp
Length = 343
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 20/117 (17%)
Query: 121 GEEVKGVGFAATCSLVAVDADGSPVSV---SWNGD--------------SRRNIIVWMDH 163
G ++ + F T S +AVD G+ + V S G+ R N+I+ M
Sbjct: 18 GSHMENLYFQGTLSALAVDLGGTNLRVAIVSMKGEIVKKYTQFNPKTYEERINLILQMCV 77
Query: 164 RAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWL 220
A +A K+N R V GG V+P ++ L + W+ V LSD L
Sbjct: 78 EAAAEAVKLNCRILGVGISTGGRVNPR---EGIVLHSTKLIQEWNSVDLRTPLSDTL 131
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 74 ESGKLLGSAS--SPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV 119
E G+++ SAS +++W+E E+ S W+ +C DS SL +V
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSV 116
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 74 ESGKLLGSAS--SPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV 119
E G+++ SAS +++W+E E+ S W+ +C DS SL +V
Sbjct: 67 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSV 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,735,891
Number of Sequences: 62578
Number of extensions: 691851
Number of successful extensions: 1355
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1294
Number of HSP's gapped (non-prelim): 52
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)