Query 009384
Match_columns 536
No_of_seqs 231 out of 1605
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 12:28:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01315 5C_CHO_kinase FGGY-f 100.0 6.6E-76 1.4E-80 641.9 40.4 459 56-535 1-462 (541)
2 TIGR01314 gntK_FGGY gluconate 100.0 8.1E-74 1.8E-78 621.9 40.3 415 56-535 1-420 (505)
3 PRK15027 xylulokinase; Provisi 100.0 5.9E-74 1.3E-78 619.9 38.5 403 56-535 1-405 (484)
4 PRK04123 ribulokinase; Provisi 100.0 1.2E-72 2.7E-77 618.4 41.2 433 55-535 3-458 (548)
5 TIGR01234 L-ribulokinase L-rib 100.0 1.1E-71 2.5E-76 608.6 40.3 428 56-535 2-455 (536)
6 PRK00047 glpK glycerol kinase; 100.0 7.1E-71 1.5E-75 597.9 38.8 403 55-535 5-422 (498)
7 PLN02295 glycerol kinase 100.0 4.9E-71 1.1E-75 600.5 35.9 401 56-535 1-431 (512)
8 COG1069 AraB Ribulose kinase [ 100.0 1.3E-70 2.7E-75 566.7 35.4 443 55-532 3-447 (544)
9 COG0554 GlpK Glycerol kinase [ 100.0 7.5E-71 1.6E-75 560.7 32.6 407 54-535 4-421 (499)
10 PTZ00294 glycerol kinase-like 100.0 3.8E-70 8.2E-75 592.8 38.4 404 55-535 2-425 (504)
11 PRK10939 autoinducer-2 (AI-2) 100.0 4.8E-70 1E-74 594.1 36.0 414 55-535 3-428 (520)
12 COG1070 XylB Sugar (pentulose 100.0 1.5E-69 3.3E-74 586.3 39.1 412 52-534 1-419 (502)
13 PRK10331 L-fuculokinase; Provi 100.0 1.5E-69 3.2E-74 583.6 38.5 397 55-535 2-408 (470)
14 TIGR01312 XylB D-xylulose kina 100.0 9.6E-69 2.1E-73 580.0 36.8 404 58-535 1-409 (481)
15 TIGR01311 glycerol_kin glycero 100.0 2E-68 4.4E-73 578.0 36.9 401 55-535 1-418 (493)
16 TIGR02628 fuculo_kin_coli L-fu 100.0 7E-68 1.5E-72 569.5 37.1 400 56-535 2-412 (465)
17 PLN02669 xylulokinase 100.0 1.6E-65 3.5E-70 559.2 35.8 416 54-535 7-464 (556)
18 TIGR02627 rhamnulo_kin rhamnul 100.0 1.8E-60 4E-65 510.8 25.3 387 58-535 1-406 (454)
19 PRK10640 rhaB rhamnulokinase; 100.0 3.4E-55 7.5E-60 470.8 26.2 375 70-535 3-394 (471)
20 KOG2517 Ribulose kinase and re 100.0 1.4E-52 3.1E-57 437.0 31.7 408 54-532 5-430 (516)
21 PF00370 FGGY_N: FGGY family o 100.0 1.1E-49 2.5E-54 393.6 18.5 241 56-328 1-245 (245)
22 KOG2531 Sugar (pentulose and h 100.0 2.3E-36 4.9E-41 303.7 26.0 409 55-529 9-457 (545)
23 PF02782 FGGY_C: FGGY family o 99.9 2E-22 4.4E-27 192.4 9.9 166 352-535 1-168 (198)
24 TIGR00241 CoA_E_activ CoA-subs 98.6 8.5E-08 1.9E-12 94.9 7.2 68 56-137 1-69 (248)
25 COG1940 NagC Transcriptional r 97.9 9.3E-05 2E-09 75.8 11.0 69 54-130 5-73 (314)
26 PRK09698 D-allose kinase; Prov 97.6 0.00061 1.3E-08 69.4 11.8 77 55-145 4-81 (302)
27 TIGR00744 ROK_glcA_fam ROK fam 97.5 0.00043 9.4E-09 71.0 9.7 86 58-163 1-87 (318)
28 PRK13311 N-acetyl-D-glucosamin 97.4 0.0012 2.7E-08 65.5 10.8 75 56-145 1-76 (256)
29 TIGR03286 methan_mark_15 putat 97.3 0.00079 1.7E-08 70.1 9.0 67 52-132 141-207 (404)
30 PRK09557 fructokinase; Reviewe 97.3 0.00096 2.1E-08 67.9 9.6 75 56-145 1-76 (301)
31 PF00480 ROK: ROK family; Int 97.3 0.00096 2.1E-08 62.3 8.6 86 59-169 1-87 (179)
32 TIGR03192 benz_CoA_bzdQ benzoy 97.3 0.00089 1.9E-08 67.1 8.2 65 55-132 32-96 (293)
33 smart00732 YqgFc Likely ribonu 97.2 0.00043 9.4E-09 57.9 4.6 30 57-86 3-32 (99)
34 PRK13310 N-acetyl-D-glucosamin 97.2 0.0026 5.6E-08 64.8 10.8 75 56-145 1-76 (303)
35 COG2971 Predicted N-acetylgluc 97.0 0.0021 4.5E-08 64.2 7.7 70 54-129 4-74 (301)
36 TIGR02261 benz_CoA_red_D benzo 97.0 0.0028 6.1E-08 62.6 8.4 68 56-132 2-70 (262)
37 PF14574 DUF4445: Domain of un 96.8 0.0022 4.9E-08 67.5 6.8 76 56-131 2-91 (412)
38 COG1924 Activator of 2-hydroxy 96.8 0.0034 7.5E-08 64.1 7.7 68 51-132 131-198 (396)
39 PF01869 BcrAD_BadFG: BadF/Bad 96.8 0.003 6.4E-08 63.3 7.1 67 58-129 1-67 (271)
40 PF05378 Hydant_A_N: Hydantoin 96.8 0.003 6.4E-08 59.2 6.3 77 58-145 2-79 (176)
41 PRK13318 pantothenate kinase; 96.5 0.01 2.2E-07 59.1 8.2 63 57-131 2-64 (258)
42 PRK13321 pantothenate kinase; 96.4 0.01 2.2E-07 59.1 7.5 63 57-131 2-64 (256)
43 PRK00292 glk glucokinase; Prov 96.3 0.0096 2.1E-07 61.1 7.3 67 55-141 2-70 (316)
44 TIGR02259 benz_CoA_red_A benzo 96.1 0.0085 1.8E-07 62.1 5.4 32 55-86 2-33 (432)
45 PRK05082 N-acetylmannosamine k 96.0 0.049 1.1E-06 55.1 10.5 63 57-134 3-65 (291)
46 PRK12408 glucokinase; Provisio 95.8 0.013 2.8E-07 60.7 5.5 22 56-77 17-38 (336)
47 PRK09472 ftsA cell division pr 95.6 0.083 1.8E-06 56.5 10.6 78 52-133 5-87 (420)
48 PF00349 Hexokinase_1: Hexokin 95.5 0.061 1.3E-06 51.6 8.5 76 53-130 61-138 (206)
49 smart00842 FtsA Cell division 95.5 0.091 2E-06 49.5 9.6 72 57-132 1-77 (187)
50 PRK14101 bifunctional glucokin 94.5 0.052 1.1E-06 61.3 5.7 60 55-130 18-77 (638)
51 TIGR02707 butyr_kinase butyrat 94.4 0.11 2.3E-06 54.2 7.1 66 57-129 2-71 (351)
52 TIGR01174 ftsA cell division p 94.2 0.27 5.8E-06 51.6 9.9 75 56-133 1-79 (371)
53 KOG1794 N-Acetylglucosamine ki 93.7 0.34 7.4E-06 48.1 8.7 70 55-129 3-73 (336)
54 PRK15080 ethanolamine utilizat 93.4 0.67 1.5E-05 46.4 10.5 63 54-118 23-85 (267)
55 PRK13317 pantothenate kinase; 93.1 0.24 5.2E-06 49.8 6.8 88 423-524 140-232 (277)
56 PLN02914 hexokinase 92.7 0.35 7.6E-06 52.4 7.8 64 53-118 93-159 (490)
57 TIGR00749 glk glucokinase, pro 91.9 0.17 3.8E-06 51.8 4.3 24 58-81 1-24 (316)
58 PLN02362 hexokinase 91.8 0.55 1.2E-05 51.2 7.9 62 53-118 93-159 (509)
59 PLN02405 hexokinase 91.4 0.56 1.2E-05 50.9 7.5 64 53-118 93-159 (497)
60 PLN02596 hexokinase-like 91.3 0.56 1.2E-05 50.8 7.3 64 53-118 94-160 (490)
61 PF13941 MutL: MutL protein 90.2 1.1 2.4E-05 48.0 8.4 54 57-119 2-58 (457)
62 TIGR00555 panK_eukar pantothen 89.9 1.4 2.9E-05 44.4 8.3 90 422-525 144-241 (279)
63 COG0849 ftsA Cell division ATP 89.8 2.2 4.7E-05 45.4 10.1 74 56-131 7-83 (418)
64 PRK13324 pantothenate kinase; 89.6 1.1 2.4E-05 44.5 7.3 63 57-130 2-64 (258)
65 TIGR02529 EutJ ethanolamine ut 89.5 1 2.2E-05 44.3 6.9 51 59-112 1-52 (239)
66 PTZ00107 hexokinase; Provision 89.3 1.7 3.6E-05 47.0 8.9 66 53-118 72-145 (464)
67 TIGR03123 one_C_unchar_1 proba 89.1 0.89 1.9E-05 46.5 6.3 33 58-90 1-33 (318)
68 TIGR01175 pilM type IV pilus a 88.7 2.3 4.9E-05 44.1 9.3 72 55-132 3-78 (348)
69 PTZ00288 glucokinase 1; Provis 88.5 3.1 6.8E-05 44.2 10.2 58 53-116 24-84 (405)
70 COG4820 EutJ Ethanolamine util 88.1 1.7 3.8E-05 41.0 6.9 30 54-83 28-57 (277)
71 PRK03011 butyrate kinase; Prov 88.1 1.4 3E-05 46.1 7.1 67 56-128 3-72 (358)
72 PTZ00340 O-sialoglycoprotein e 87.5 2.5 5.4E-05 43.8 8.4 78 56-134 2-81 (345)
73 PF11104 PilM_2: Type IV pilus 87.3 1.8 3.8E-05 44.9 7.4 39 489-527 247-287 (340)
74 PRK13331 pantothenate kinase; 86.2 2.6 5.6E-05 41.7 7.5 39 491-531 181-220 (251)
75 COG4972 PilM Tfp pilus assembl 85.8 2.1 4.5E-05 43.5 6.6 63 56-123 11-77 (354)
76 PRK09604 UGMP family protein; 85.1 3.9 8.4E-05 42.3 8.6 79 56-134 2-83 (332)
77 PRK09605 bifunctional UGMP fam 84.2 4 8.6E-05 45.1 8.7 77 56-133 2-79 (535)
78 COG4020 Uncharacterized protei 83.8 4.1 8.8E-05 39.8 7.3 63 55-131 3-65 (332)
79 COG5026 Hexokinase [Carbohydra 83.7 3.2 7E-05 43.7 7.1 62 53-117 73-137 (466)
80 PRK13326 pantothenate kinase; 83.4 3.9 8.4E-05 40.8 7.4 40 491-531 193-233 (262)
81 COG3894 Uncharacterized metal- 83.2 3 6.5E-05 44.6 6.6 32 54-85 163-195 (614)
82 COG3734 DgoK 2-keto-3-deoxy-ga 82.5 1.9 4.1E-05 42.9 4.6 34 52-85 2-35 (306)
83 TIGR03722 arch_KAE1 universal 80.9 4.9 0.00011 41.3 7.4 76 58-134 1-77 (322)
84 TIGR00329 gcp_kae1 metallohydr 80.8 5.9 0.00013 40.4 7.8 77 58-134 1-80 (305)
85 PRK13317 pantothenate kinase; 80.1 18 0.00039 36.4 10.8 28 55-82 2-29 (277)
86 TIGR00671 baf pantothenate kin 79.9 5.6 0.00012 39.2 7.0 37 490-527 182-219 (243)
87 TIGR03725 bact_YeaZ universal 78.6 5.6 0.00012 37.9 6.4 63 57-132 1-63 (202)
88 PLN02666 5-oxoprolinase 78.2 5.4 0.00012 48.4 7.4 83 53-144 7-98 (1275)
89 PF07318 DUF1464: Protein of u 77.4 3.7 8E-05 42.3 5.0 58 59-134 1-58 (343)
90 TIGR03723 bact_gcp putative gl 77.1 9.8 0.00021 39.0 8.1 78 57-134 1-81 (314)
91 PRK13320 pantothenate kinase; 76.3 9.4 0.0002 37.6 7.4 25 56-81 3-27 (244)
92 COG0145 HyuA N-methylhydantoin 75.8 8 0.00017 43.8 7.6 32 55-86 2-33 (674)
93 PRK00109 Holliday junction res 75.5 18 0.00039 32.3 8.4 23 56-78 5-27 (138)
94 PF14450 FtsA: Cell division p 74.3 5 0.00011 34.8 4.4 56 57-113 1-59 (120)
95 PF04312 DUF460: Protein of un 74.3 10 0.00022 33.6 6.2 32 54-86 31-62 (138)
96 TIGR00555 panK_eukar pantothen 73.5 65 0.0014 32.4 12.6 27 57-83 2-28 (279)
97 PRK10854 exopolyphosphatase; P 73.1 16 0.00035 40.1 9.1 73 55-132 11-92 (513)
98 PRK14878 UGMP family protein; 72.3 10 0.00022 39.0 6.9 75 58-134 1-76 (323)
99 PF00871 Acetate_kinase: Aceto 72.0 12 0.00025 39.7 7.3 38 491-528 296-334 (388)
100 TIGR03706 exo_poly_only exopol 71.7 11 0.00024 38.2 6.9 72 57-131 2-80 (300)
101 TIGR01319 glmL_fam conserved h 70.9 11 0.00025 40.3 6.8 64 60-132 1-69 (463)
102 KOG1369 Hexokinase [Carbohydra 70.9 9 0.0002 41.2 6.1 61 54-118 85-149 (474)
103 COG0533 QRI7 Metal-dependent p 70.7 14 0.0003 38.1 7.1 80 56-136 2-84 (342)
104 PF07736 CM_1: Chorismate muta 70.5 7 0.00015 33.8 4.2 38 97-134 13-50 (118)
105 COG1214 Inactive homolog of me 70.2 10 0.00022 36.8 5.9 68 56-135 2-71 (220)
106 PRK00976 hypothetical protein; 69.0 15 0.00032 37.7 7.0 63 56-135 2-66 (326)
107 KOG2707 Predicted metalloprote 68.8 14 0.00031 37.9 6.7 81 57-137 34-117 (405)
108 PRK12440 acetate kinase; Revie 68.3 7.4 0.00016 41.0 4.7 38 491-529 297-335 (397)
109 COG1521 Pantothenate kinase ty 66.8 13 0.00029 36.7 6.0 41 490-530 188-228 (251)
110 cd02185 AroH Chorismate mutase 66.3 9.3 0.0002 32.9 4.1 38 97-134 13-50 (117)
111 TIGR01796 CM_mono_aroH monofun 65.6 9.8 0.00021 32.8 4.1 38 97-134 13-50 (117)
112 PRK11031 guanosine pentaphosph 64.9 27 0.00058 38.3 8.5 74 54-132 5-87 (496)
113 PRK00039 ruvC Holliday junctio 62.8 50 0.0011 30.4 8.7 62 56-129 3-67 (164)
114 COG1548 Predicted transcriptio 61.0 17 0.00037 35.9 5.3 32 56-89 4-35 (330)
115 PTZ00009 heat shock 70 kDa pro 60.6 7.6 0.00016 44.1 3.4 23 52-74 1-23 (653)
116 PLN02920 pantothenate kinase 1 60.2 2.2E+02 0.0048 30.1 13.7 134 351-527 167-310 (398)
117 PLN03184 chloroplast Hsp70; Pr 59.6 13 0.00027 42.5 5.0 49 23-74 10-58 (673)
118 PRK00290 dnaK molecular chaper 59.2 8.3 0.00018 43.5 3.4 53 480-534 292-344 (627)
119 PF02075 RuvC: Crossover junct 58.7 36 0.00077 30.8 6.9 61 57-129 1-64 (149)
120 PLN02902 pantothenate kinase 58.1 1.3E+02 0.0029 35.0 12.5 134 351-527 216-359 (876)
121 TIGR00241 CoA_E_activ CoA-subs 55.8 8.6 0.00019 37.8 2.5 48 477-534 173-221 (248)
122 TIGR00250 RNAse_H_YqgF RNAse H 55.5 43 0.00093 29.5 6.6 21 58-78 1-21 (130)
123 CHL00094 dnaK heat shock prote 54.8 9.8 0.00021 42.9 3.1 22 56-78 3-24 (621)
124 PRK07157 acetate kinase; Provi 54.3 1.4E+02 0.0031 31.6 11.3 38 492-529 297-335 (400)
125 cd00529 RuvC_resolvase Hollida 54.3 67 0.0015 29.1 8.0 53 57-116 2-57 (154)
126 PRK12379 propionate/acetate ki 53.8 48 0.001 35.1 7.7 37 492-529 295-332 (396)
127 COG0443 DnaK Molecular chapero 53.6 12 0.00026 41.8 3.4 22 55-76 5-26 (579)
128 COG0248 GppA Exopolyphosphatas 53.5 19 0.00042 39.2 4.9 75 55-132 3-84 (492)
129 PRK11678 putative chaperone; P 52.9 10 0.00022 40.9 2.7 53 477-535 365-418 (450)
130 PRK13410 molecular chaperone D 52.1 13 0.00028 42.4 3.4 22 56-78 3-24 (668)
131 PRK13411 molecular chaperone D 52.0 12 0.00026 42.5 3.2 21 56-77 3-23 (653)
132 COG0837 Glk Glucokinase [Carbo 50.4 74 0.0016 32.3 8.0 25 55-80 7-32 (320)
133 PF01548 DEDD_Tnp_IS110: Trans 50.1 37 0.00081 29.9 5.6 30 57-86 1-30 (144)
134 COG2183 Tex Transcriptional ac 50.1 37 0.0008 38.7 6.5 64 54-131 329-394 (780)
135 PF14639 YqgF: Holliday-juncti 50.0 42 0.00092 30.4 5.8 29 56-84 6-38 (150)
136 TIGR02350 prok_dnaK chaperone 49.9 12 0.00026 41.9 2.8 20 56-75 1-20 (595)
137 PRK07058 acetate kinase; Provi 48.2 25 0.00054 37.1 4.6 34 491-525 295-329 (396)
138 PF00012 HSP70: Hsp70 protein; 48.2 12 0.00027 41.7 2.5 51 482-534 296-346 (602)
139 COG4012 Uncharacterized protei 48.0 53 0.0012 32.6 6.4 44 56-108 228-271 (342)
140 PTZ00186 heat shock 70 kDa pre 47.6 17 0.00037 41.3 3.5 49 481-534 320-371 (657)
141 TIGR03281 methan_mark_12 putat 46.4 14 0.0003 37.4 2.2 23 57-79 1-23 (326)
142 PRK05183 hscA chaperone protei 45.7 18 0.00038 40.8 3.3 52 481-534 295-346 (616)
143 PF02685 Glucokinase: Glucokin 45.1 34 0.00074 35.1 5.0 20 58-77 1-20 (316)
144 PF03652 UPF0081: Uncharacteri 45.0 35 0.00076 30.3 4.4 23 56-78 2-24 (135)
145 PF03630 Fumble: Fumble ; Int 44.6 75 0.0016 33.0 7.4 135 351-528 158-301 (341)
146 PF05035 DGOK: 2-keto-3-deoxy- 44.3 23 0.00049 35.9 3.4 29 61-89 1-29 (287)
147 TIGR01865 cas_Csn1 CRISPR-asso 43.9 17 0.00036 42.3 2.8 23 55-77 1-23 (805)
148 PTZ00400 DnaK-type molecular c 42.6 19 0.00042 40.9 2.9 18 56-73 42-59 (663)
149 COG0816 Predicted endonuclease 42.1 45 0.00098 29.9 4.6 22 55-76 2-23 (141)
150 COG2441 Predicted butyrate kin 41.5 48 0.001 33.2 5.0 58 58-129 1-59 (374)
151 PRK01433 hscA chaperone protei 41.4 23 0.00049 39.8 3.3 22 56-78 20-41 (595)
152 PF03309 Pan_kinase: Type III 41.1 76 0.0016 30.2 6.4 19 57-75 1-19 (206)
153 PRK12397 propionate kinase; Re 40.7 37 0.0008 36.0 4.5 37 491-527 298-334 (404)
154 PF11104 PilM_2: Type IV pilus 39.7 52 0.0011 33.9 5.4 68 59-132 1-72 (340)
155 TIGR00904 mreB cell shape dete 37.0 26 0.00057 36.0 2.7 21 58-79 5-25 (333)
156 TIGR01991 HscA Fe-S protein as 36.3 24 0.00052 39.6 2.5 54 480-535 278-331 (599)
157 KOG1386 Nucleoside phosphatase 36.2 1E+02 0.0022 33.3 6.9 65 53-117 7-78 (501)
158 KOG1385 Nucleoside phosphatase 33.7 69 0.0015 33.9 5.0 65 53-117 65-134 (453)
159 PRK13322 pantothenate kinase; 33.3 36 0.00079 33.5 2.9 37 490-527 182-219 (246)
160 TIGR00016 ackA acetate kinase. 32.6 64 0.0014 34.3 4.7 41 492-533 304-345 (404)
161 PRK13928 rod shape-determining 32.5 32 0.0007 35.4 2.5 45 482-526 240-287 (336)
162 PF08735 DUF1786: Putative pyr 32.5 1.2E+02 0.0026 30.1 6.2 45 56-109 168-212 (254)
163 PF01191 RNA_pol_Rpb5_C: RNA p 30.3 49 0.0011 26.2 2.6 35 263-313 19-53 (74)
164 KOG2708 Predicted metalloprote 30.1 1.4E+02 0.0031 29.0 6.1 60 74-133 20-80 (336)
165 PRK13929 rod-share determining 29.1 52 0.0011 33.9 3.4 12 57-68 6-17 (335)
166 PRK11678 putative chaperone; P 28.9 77 0.0017 34.3 4.7 20 57-77 2-21 (450)
167 COG4820 EutJ Ethanolamine util 28.0 3.1E+02 0.0067 26.3 7.8 23 124-146 29-54 (277)
168 COG4401 AroH Chorismate mutase 27.9 1.1E+02 0.0024 26.1 4.3 37 98-134 16-52 (125)
169 PF03702 UPF0075: Uncharacteri 27.3 1.1E+02 0.0023 32.2 5.3 73 55-129 1-93 (364)
170 PRK09570 rpoH DNA-directed RNA 26.8 54 0.0012 26.3 2.3 33 265-313 24-56 (79)
171 PF03702 UPF0075: Uncharacteri 26.8 2.1E+02 0.0046 30.0 7.4 40 482-527 258-297 (364)
172 PRK13328 pantothenate kinase; 26.4 67 0.0015 31.8 3.5 37 491-528 191-228 (255)
173 TIGR00228 ruvC crossover junct 26.2 2.6E+02 0.0057 25.5 6.9 63 57-129 1-63 (156)
174 PRK13930 rod shape-determining 24.9 50 0.0011 33.8 2.3 50 482-533 245-297 (335)
175 cd04690 Nudix_Hydrolase_31 Mem 24.5 2.3E+02 0.0051 23.5 6.2 57 69-129 5-64 (118)
176 COG2012 RPB5 DNA-directed RNA 23.8 74 0.0016 25.4 2.5 33 265-313 27-59 (80)
177 PF07066 DUF3882: Lactococcus 23.4 5.6E+02 0.012 23.2 8.4 56 56-119 3-63 (159)
178 PF06723 MreB_Mbl: MreB/Mbl pr 23.1 55 0.0012 33.8 2.2 24 57-81 3-26 (326)
179 TIGR01991 HscA Fe-S protein as 23.0 88 0.0019 35.2 4.0 18 57-74 1-18 (599)
180 TIGR00016 ackA acetate kinase. 22.8 1.5E+02 0.0033 31.5 5.4 27 57-83 6-34 (404)
181 COG3513 Predicted CRISPR-assoc 22.8 68 0.0015 36.7 2.9 23 52-74 1-23 (1088)
182 COG0282 ackA Acetate kinase [E 22.4 64 0.0014 33.8 2.5 28 56-83 2-30 (396)
183 PRK09585 anmK anhydro-N-acetyl 22.3 2.2E+02 0.0047 29.9 6.4 75 56-132 3-99 (365)
184 cd04680 Nudix_Hydrolase_21 Mem 22.0 2.7E+02 0.0058 23.1 6.0 60 66-129 2-63 (120)
185 PRK05183 hscA chaperone protei 21.9 1E+02 0.0022 34.8 4.2 20 55-74 19-38 (616)
186 PRK00290 dnaK molecular chaper 21.7 96 0.0021 35.0 4.0 21 56-77 3-23 (627)
187 PF04848 Pox_A22: Poxvirus A22 21.6 1.7E+02 0.0037 26.4 4.7 24 56-79 2-25 (143)
188 COG3426 Butyrate kinase [Energ 21.4 1.4E+02 0.003 30.2 4.4 39 490-528 271-310 (358)
189 cd06559 Endonuclease_V Endonuc 21.3 5.4E+02 0.012 24.6 8.5 68 55-143 26-104 (208)
190 PRK13927 rod shape-determining 20.8 64 0.0014 33.0 2.2 50 482-533 241-293 (334)
191 PRK13325 bifunctional biotin-- 20.7 1.4E+02 0.0029 33.6 4.8 33 47-80 330-362 (592)
192 cd04670 Nudix_Hydrolase_12 Mem 20.6 3.7E+02 0.0079 22.7 6.7 59 66-128 4-65 (127)
193 COG0533 QRI7 Metal-dependent p 20.3 9.8E+02 0.021 24.8 12.1 42 489-533 237-278 (342)
194 PRK12379 propionate/acetate ki 20.1 2.1E+02 0.0045 30.4 5.7 31 54-84 4-35 (396)
No 1
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=6.6e-76 Score=641.92 Aligned_cols=459 Identities=44% Similarity=0.786 Sum_probs=369.7
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCC
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (536)
++||||+|||++|++|||.+|+++++.+.+++... .+||+||||++||+++++++++++++.+.+..+|.+||||+|++
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~~s 80 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDPNSVKGIGFDATCS 80 (541)
T ss_pred CEEEEEecCcCEEEEEEcCCCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCChhheEEEEeccccc
Confidence 37999999999999999999999999998887644 89999999999999999999999998877778899999999999
Q ss_pred eEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCchhHHhhhCCCCCCCChHHHHHHHHHhCchhHhhhceee
Q 009384 135 LVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWM 214 (536)
Q Consensus 135 ~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l 214 (536)
+|+||++|+|+....+.++.+|+|+|+|.|+.++++++++..++++++||+++++.++++||+|+++|+||+|+++.+|+
T Consensus 81 ~v~~D~~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l 160 (541)
T TIGR01315 81 LVVLTHDGEPLPVSKNGGADQNIILWMDHRALAEAEKINATNHNLLRYVGGKMSVEMEIPKVLWLKNNMPPELFARCKFF 160 (541)
T ss_pred ceEEcCCCCeeecCCCCCcccceeEeecCcHHHHHHHHHHHHHHHHHHhCCeeCcchhHHHHHHHHHhChHHHHHhhhhc
Confidence 99999999999555555566799999999999999999764457899999999999999999999999999999999999
Q ss_pred cchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccccCccccCCCCc
Q 009384 215 DLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHP 294 (536)
Q Consensus 215 ~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l~~~i~~~g~~ 294 (536)
+++|||.|+|||+...+..+ ++.+++||. +|+++++||+++++.+||++....+||+++|++++++++
T Consensus 161 ~~~dyl~~~LTG~~~~d~~~---------as~~~~~d~---~d~~~~~W~~ell~~~Gi~~~~~~~l~~~lp~i~~~~~~ 228 (541)
T TIGR01315 161 DLTDFLTWRATGKEIRSFCS---------VVCKWGFVP---VDGSNKGWQEDFYETIGLGELVTDNFIRMGGSWMSPGEL 228 (541)
T ss_pred chhhhheeeeecchhHhHhH---------HhHhhhccc---cccccCCCCHHHHHHcCChhhhhccccccCCcccCCCcc
Confidence 99999999999997522222 223444432 358999999999999999952111124444489999999
Q ss_pred ccCCccHHHHHHcCCCCCCcEEeccchhHhhhhcccc--ccCCcchhhhhhhhhhccCeEEEEecccceeeeeecccccc
Q 009384 295 LGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVME--SVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFI 372 (536)
Q Consensus 295 ~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g--~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~~~~~~~~ 372 (536)
+|++|++++|+++||++|+||++|++|++|+++|+++ +.++| .++. ..+++.+++|||+++..+++++..+
T Consensus 229 ~G~~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~g~~~~~~~g---~~~~----~~~~~~~~~GTs~~~~~~~~~~~~~ 301 (541)
T TIGR01315 229 VGGGLTAEAAQELGLPAGTAVGSGLIDAHAGWIGTVGAKVAENG---DVSQ----AFTRLAAVAGTSTCHMAMTKGPVFV 301 (541)
T ss_pred cccccCHHHHHHhCCCCCCeEeechHhhhccccccccccccccc---cccC----CCCcEEEEecCceEEEEecCCCccC
Confidence 9922999999999999999999999999999999944 25554 1100 0127889999999988888877666
Q ss_pred CCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCCCCCCCCe
Q 009384 373 PGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDI 452 (536)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl 452 (536)
+..+.+++++..++.|+.+++++++|.+++||++.+...++........+.+.|+.|++.+++++......-+|++++|+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gl 381 (541)
T TIGR01315 302 PGVWGPYRDALIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAKTNAPSISYLVRHF 381 (541)
T ss_pred CceeecccCccCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhhcccCccccCCCce
Confidence 65554333445688899999999999999999997632111111111122356877776654433211000011235899
Q ss_pred EEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccccccccccc
Q 009384 453 HVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTV 532 (536)
Q Consensus 453 ~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~ 532 (536)
+|+|||.|+|+|+|||++||+|+||+.+|++.++++++||++|||||.+|+++|.|++.|.++++|+++||+ +||+-|
T Consensus 382 ~flP~l~G~r~P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGg--a~s~~w 459 (541)
T TIGR01315 382 HVYPDLWGNRSPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQ--CQNPLL 459 (541)
T ss_pred EEccccccCcCCCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCc--ccCHHH
Confidence 999999999999999999999999999999978777899999999999999999999888889999999996 788888
Q ss_pred ccC
Q 009384 533 RSF 535 (536)
Q Consensus 533 ~~~ 535 (536)
+|.
T Consensus 460 ~Qi 462 (541)
T TIGR01315 460 MQL 462 (541)
T ss_pred HHH
Confidence 774
No 2
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=8.1e-74 Score=621.90 Aligned_cols=415 Identities=20% Similarity=0.343 Sum_probs=361.3
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-C
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C 133 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~-~ 133 (536)
|+||||+|||++|++|+|.+|++++..+.+++... .+|+.|||+++||+.+++++++++++.+.. .+|.+||||+| +
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~-~~I~~Igis~~~~ 79 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLEDE-DEILFVSFSTQMH 79 (505)
T ss_pred CEEEEeccccceEEEEEcCCCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCCCc-CceEEEEEecccc
Confidence 58999999999999999999999999999888655 789999999999999999999999876544 67999999998 9
Q ss_pred CeEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhhhc
Q 009384 134 SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF 211 (536)
Q Consensus 134 ~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~ 211 (536)
++|+||++|+|+ +|+|+|+|.|+.++++++.+.. ++++++||+++++.++++||+|+++|+|++|++++
T Consensus 80 ~~v~~D~~g~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~ 150 (505)
T TIGR01314 80 SLIAFDENWQPL---------TRLITWADNRAVKYAEQIKESKNGFDIYRRTGTPIHPMAPLSKIIWLEAEHPDIYQKAA 150 (505)
T ss_pred eeEEECCCcCCc---------ccceeccccchHHHHHHHHhhcCHHHHHHHHCCCCCccchHHHHHHHHHhChhHHHhhc
Confidence 999999999999 8999999999999999998764 67999999999999999999999999999999999
Q ss_pred eeecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccccCccccCC
Q 009384 212 RWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 291 (536)
Q Consensus 212 ~~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l~~~i~~~ 291 (536)
+|++++|||.|+|||+.. ++.|. |++|++ ||+++++|++++++.+||++.++ | +++++
T Consensus 151 ~~l~~~dyl~~~LTG~~~-~d~s~--------As~t~l------~d~~~~~W~~ell~~~gi~~~~l---P----~l~~~ 208 (505)
T TIGR01314 151 KYLEIKGYIFQRLFGTYK-IDYST--------ASATGM------FNLFELDWDKEALELTGIKESQL---P----KLVPT 208 (505)
T ss_pred EEECHHHHHHHHHcCCce-eEhhh--------hhhhcc------eeCCCCCCCHHHHHhcCCCHHHC---C----CCcCc
Confidence 999999999999999874 44443 445554 58899999999999999997544 4 89999
Q ss_pred CCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceeeeeeccccc
Q 009384 292 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLF 371 (536)
Q Consensus 292 g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~~~~~~~ 371 (536)
++++|+ |++++|+++||++|+||++|++|++|+++|+ |+.+|| ++++++|||+++.+++++|..
T Consensus 209 g~~iG~-l~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~~g--------------~~~~~~GTs~~~~~~~~~~~~ 272 (505)
T TIGR01314 209 TEIEEN-LPHEYAKKMGIQSSTPFVIGASDGVLSNLGV-NAIKKG--------------EAAVTIGTSGAIRTVIDKPKT 272 (505)
T ss_pred ccccCC-cCHHHHHHhCCCCCCeEEEeccHHHHHHhcC-CCCCCC--------------cEEEEechhheeeeccCcCcc
Confidence 999998 9999999999999999999999999999999 777787 899999999999988887766
Q ss_pred cCCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCCCCCCCC
Q 009384 372 IPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTED 451 (536)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~g 451 (536)
++... .+++...++.|+.+++++++|.+++||++.+... .. ..+...+.+.|+.|++++++ +|+++++
T Consensus 273 ~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~-~~-~~~~~~~~~~y~~l~~~a~~---------~~~g~~g 340 (505)
T TIGR01314 273 DEKGR-IFCYALTKEHWVIGGPVNNGGDVLRWARDEIFDS-EI-ETATRLGIDPYDVLTEIAAR---------VSPGADG 340 (505)
T ss_pred CCCCc-eEEEEecCCcEEEEeeecchHhHHHHHHHHhhhh-hh-hhhhhcCCCHHHHHHHHHhh---------CCCCCCc
Confidence 55332 1222233477999999999999999999987531 11 11222345678999888765 4578899
Q ss_pred eEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccccccccc
Q 009384 452 IHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVFYLSQSR 530 (536)
Q Consensus 452 l~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGgs~s~~~ 530 (536)
++|+|||.|+|+|+||+++||+|+|++..|+++|+ +||++|||||.++++++.+.+ .|.++++|+++||+ ++|+
T Consensus 341 l~~~P~l~G~r~P~~~~~~rg~f~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGg--a~s~ 415 (505)
T TIGR01314 341 LLFHPYLAGERAPLWNANARGSFFGLTYSHKKEHM---IRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGF--ASSE 415 (505)
T ss_pred eEEecccccCCCCCCCCCccEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCc--ccCH
Confidence 99999999999999999999999999999999985 679999999999999999987 67789999999997 6778
Q ss_pred ccccC
Q 009384 531 TVRSF 535 (536)
Q Consensus 531 ~~~~~ 535 (536)
-|+|+
T Consensus 416 ~w~Qi 420 (505)
T TIGR01314 416 VWRQM 420 (505)
T ss_pred HHHHH
Confidence 88775
No 3
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=5.9e-74 Score=619.92 Aligned_cols=403 Identities=24% Similarity=0.335 Sum_probs=351.8
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-C
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C 133 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~-~ 133 (536)
++||||+|||++|++|||++|+++++.+.+++... .+||+||||++||+++++++++++++. ...+|.+||||+| |
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~--~~~~I~aI~is~q~~ 78 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH--SLQDVKALGIAGQMH 78 (484)
T ss_pred CEEEEEecccceEEEEEcCCCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC--CccceeEEEEecCCC
Confidence 47999999999999999999999999999998654 789999999999999999999999875 3468999999998 9
Q ss_pred CeEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCchhHHhhhCCCCCCCChHHHHHHHHHhCchhHhhhcee
Q 009384 134 SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRW 213 (536)
Q Consensus 134 ~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~ 213 (536)
++++||++|+|+ +|+++|+|.|+.++++++.+....+++.||.++++.++++||+|+++|+||+|+|+++|
T Consensus 79 ~~v~~D~~g~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~ 149 (484)
T PRK15027 79 GATLLDAQQRVL---------RPAILWNDGRCAQECALLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKV 149 (484)
T ss_pred ceEEECCCcCCc---------cccccccCccHHHHHHHHHHhcchhHHHhCCCcCccchHHHHHHHHHhCHHHHHHhhhh
Confidence 999999999999 99999999999999999987655677899999999999999999999999999999999
Q ss_pred ecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccccCccccCCCC
Q 009384 214 MDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 293 (536)
Q Consensus 214 l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l~~~i~~~g~ 293 (536)
++++|||.|+|||+.. ++.+. +++|++ ||+++++|++++++.+||++..+ | +++++++
T Consensus 150 ~~~~dyl~~~LTG~~~-~d~s~--------as~t~l------~d~~~~~w~~~ll~~~gi~~~~l---P----~v~~~~~ 207 (484)
T PRK15027 150 LLPKDYLRLRMTGEFA-SDMSD--------AAGTMW------LDVAKRDWSDVMLQACHLSRDQM---P----ALYEGSE 207 (484)
T ss_pred cChHHHHHhhhcCCcc-ccHHH--------hhcccc------cccccCCCcHHHHHHhCCCHHHC---C----CCCCCcc
Confidence 9999999999999875 34443 334554 58999999999999999997544 4 7999999
Q ss_pred cccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceeeeeeccccccC
Q 009384 294 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP 373 (536)
Q Consensus 294 ~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~~~~~~~~~ 373 (536)
++|+ |++++|+++||+ ++||++|++|++|+++|+ |+.+|| ++++++|||+++..+++++..++
T Consensus 208 ~~G~-l~~~~a~~~GL~-~~pV~~g~~D~~aa~~g~-g~~~~g--------------~~~~s~GTs~~~~~~~~~~~~~~ 270 (484)
T PRK15027 208 ITGA-LLPEVAKAWGMA-TVPVVAGGGDNAAGAVGV-GMVDAN--------------QAMLSLGTSGVYFAVSEGFLSKP 270 (484)
T ss_pred cccc-ccHHHHHHhCCC-CCeEEecccHHHHHHhcc-CcccCC--------------cEEEEecCceEEEEecCCcccCc
Confidence 9998 999999999997 699999999999999999 777787 89999999999888888766554
Q ss_pred CccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCCCCCCCCeE
Q 009384 374 GVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIH 453 (536)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~ 453 (536)
......+++..|+.|++++.+.++|.+++|+++.+.. +.|+++.+.+++ +|+++++++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~-------------~~~~~~~~~a~~---------~~~g~~gl~ 328 (484)
T PRK15027 271 ESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTGL-------------SNVPALIAAAQQ---------ADESAEPVW 328 (484)
T ss_pred hhceeecceecCCceEEEEEehhhHHHHHHHHHHhCC-------------ccHHHHHHHHhh---------CCCCCCceE
Confidence 3211123456688899999999999999999987632 124455554443 457899999
Q ss_pred EccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecccccccccccc
Q 009384 454 VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTVR 533 (536)
Q Consensus 454 flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~~ 533 (536)
|+|||.|+|+|+||+++||+|+|++.+|++.|+ +||++|||||.+|+++|.|++.|.++++|+++||+ +||+-|+
T Consensus 329 ~~P~l~G~r~P~~~~~arg~f~gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGg--a~s~~w~ 403 (484)
T PRK15027 329 FLPYLSGERTPHNNPQAKGVFFGLTHQHGPNEL---ARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGG--ARSEYWR 403 (484)
T ss_pred EecccccCCCcCCCCCcceEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcc--cCCHHHH
Confidence 999999999999999999999999999999995 67999999999999999998888889999999996 7888887
Q ss_pred cC
Q 009384 534 SF 535 (536)
Q Consensus 534 ~~ 535 (536)
|.
T Consensus 404 Qi 405 (484)
T PRK15027 404 QM 405 (484)
T ss_pred HH
Confidence 74
No 4
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=1.2e-72 Score=618.41 Aligned_cols=433 Identities=28% Similarity=0.415 Sum_probs=358.9
Q ss_pred CeEEEEEccccceeEEEEcC-CCCEEEEEEeecccc-------cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 009384 55 SVFLGVDVGTGSARAGLFDE-SGKLLGSASSPIQIW-------KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKG 126 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~-~g~i~~~~~~~~~~~-------~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~a 126 (536)
+|+||||+||||+|++|||. +|+++++.+.+++.+ +.+||+||||++||+++++++++++++.+..+.+|.+
T Consensus 3 ~~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~I~a 82 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAGVDPAAVVG 82 (548)
T ss_pred cEEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcCCChhhEEE
Confidence 58999999999999999995 999999999998743 4889999999999999999999999988777788999
Q ss_pred EEEcCC-CCeEEEcCCCCeeeecC--CCCCCcceeEEeccchHHHHHHHHcCc----hhHHhhh-CCCCCCCChHHHHHH
Q 009384 127 VGFAAT-CSLVAVDADGSPVSVSW--NGDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYC-GGAVSPEMQPPKLLW 198 (536)
Q Consensus 127 Igis~~-~~~v~vD~~G~pl~~~~--~~~~~~p~i~W~D~Ra~~~~~~l~~~~----~~~~~~t-G~~~~~~~~~~kl~w 198 (536)
||||+| +++|+||++|+|+.+.+ ++++.+|+|+|+|.|+.++++++++.. +++|+.+ |..+++.++++||+|
T Consensus 83 Igis~~~~~~v~~D~~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~kl~W 162 (548)
T PRK04123 83 IGVDFTGSTPAPVDADGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHERGEADLSRYIGGIYSSEWFWAKILH 162 (548)
T ss_pred EEEecccceeEEECCCCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhccchhhHHHHhcCCccCcchHHHHHHH
Confidence 999998 99999999999994211 233445999999999999999998753 4577655 999999999999999
Q ss_pred HHHhCchhHhhhceeecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCc-CCCCCHHHHHHcC-----
Q 009384 199 VKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDME-ACGWDDEFWEEIG----- 272 (536)
Q Consensus 199 l~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~-~~~W~~~ll~~~G----- 272 (536)
|++|+|++|+|+++|++++|||.|+|||+..++..+. .+..++.+++ ||.+ ++.||+++|+.+|
T Consensus 163 l~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~----~~~~as~~~~------~d~~~~~~~s~ell~~~g~~l~~ 232 (548)
T PRK04123 163 VLREDPAVYEAAASWVEACDWVVALLTGTTDPQDIVR----SRCAAGHKAL------WHESWGGLPSADFFDALDPLLAR 232 (548)
T ss_pred HHhhCHHHHHHHhHhccHHHHHHHHHhCCCCcccccc----chhhcccccc------cccccCCCCCHHHHHHhccchhh
Confidence 9999999999999999999999999999654222211 1223445554 5887 5666999999996
Q ss_pred -CCCcccccccccCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCe
Q 009384 273 -LGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHR 351 (536)
Q Consensus 273 -i~~~~~~~~p~l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~ 351 (536)
|+..++ | +++++++++|+ |++++|+++||++|+||++|+||++|+++|+ |+ ++| +
T Consensus 233 ~i~~~ll---P----~l~~~g~~~G~-v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~-g~-~~g--------------~ 288 (548)
T PRK04123 233 GLRDKLF---T----ETWTAGEPAGT-LTAEWAQRLGLPEGVAVSVGAFDAHMGAVGA-GA-EPG--------------T 288 (548)
T ss_pred hhHhhcC---C----ccccCCCcccc-cCHHHHHHhCCCCCCeEEecchhhhhhhccc-Cc-CCC--------------c
Confidence 776443 4 89999999998 9999999999999999999999999999999 77 687 7
Q ss_pred EEEEecccceeeeeeccccccCCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHH
Q 009384 352 MVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNG 431 (536)
Q Consensus 352 ~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 431 (536)
+++++||++++..+++++...+..+..+..+..++.|.++++++++|.+++||++.+... +.....++.+.+.|+.|++
T Consensus 289 ~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 367 (548)
T PRK04123 289 LVKVMGTSTCDILLADKQRAVPGICGQVDGSIVPGLIGYEAGQSAVGDIFAWFARLLVPP-EYKDEAEARGKQLLELLTE 367 (548)
T ss_pred EEEEecCceEEEEecCCccccCceeecccCcccCCeeeecccccchHHHHHHHHHhcchH-hHHHHHHhcCCcHHHHHHH
Confidence 899999999988888876433333222222345788999999999999999999987421 1111112223467888888
Q ss_pred HHHhhhhhcCCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 009384 432 TLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH 511 (536)
Q Consensus 432 ~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~ 511 (536)
++++ +|+++++++|+|||.|+|+|+|||++||+|+|++.+|++.|+ +||++||+||.+|+++|.|++.
T Consensus 368 ~a~~---------~~~g~~gl~f~P~l~Ger~P~~~~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~~~~~e~l~~~ 435 (548)
T PRK04123 368 AAAK---------QPPGEHGLVALDWFNGRRTPLADQRLKGVITGLTLGTDAPDI---YRALIEATAFGTRAIMECFEDQ 435 (548)
T ss_pred HHHh---------cCCCCCceEEcccccCCCCCCCCCCCceEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHc
Confidence 8766 457999999999999999999999999999999999999995 6799999999999999999988
Q ss_pred CCCccEEEEecccccccccccccC
Q 009384 512 GHKVREHIFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 512 g~~~~~I~~~GGgs~s~~~~~~~~ 535 (536)
|.++++|+++||+ .+||+-|+|+
T Consensus 436 g~~~~~i~~~GGg-~s~s~~w~Qi 458 (548)
T PRK04123 436 GVPVEEVIAAGGI-ARKNPVLMQI 458 (548)
T ss_pred CCCcceEEEeCCC-cccCHHHHHH
Confidence 8888999999996 2567777664
No 5
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=1.1e-71 Score=608.64 Aligned_cols=428 Identities=28% Similarity=0.404 Sum_probs=351.0
Q ss_pred eEEEEEccccceeEEEEc-CCCCEEEEEEeeccc------ccC------CCccccCHHHHHHHHHHHHHHHHHHcCCCCC
Q 009384 56 VFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQI------WKE------GDCIEQSSTDIWHAICAAVDSACSLANVDGE 122 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d-~~g~i~~~~~~~~~~------~~~------~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~ 122 (536)
|+||||+|||++|++||| .+|++++..+.++++ ++. +||+||||++||+++++++++++++.+.+++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~~~~~ 81 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELGVDPA 81 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 789999999999999999 899999999998874 233 8999999999999999999999998877677
Q ss_pred CEEEEEEcCC-CCeEEEcCCCCeeeecC--CCCCCcceeEEeccchHHHHHHHHcCc----hhHHhhhCCCCCCCChHHH
Q 009384 123 EVKGVGFAAT-CSLVAVDADGSPVSVSW--NGDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPK 195 (536)
Q Consensus 123 ~I~aIgis~~-~~~v~vD~~G~pl~~~~--~~~~~~p~i~W~D~Ra~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~k 195 (536)
+|.+||||+| +++|+||++|+|+.+.. .+++..++|+|+|.|+.++++++++.. +.++++||+++++.++++|
T Consensus 82 ~I~aI~~s~q~~s~v~~D~~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~k 161 (536)
T TIGR01234 82 DVVGIGVDFTACTPAPIDSDGNPLCLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHAPGEVDLSRYGGIISSEWFWAK 161 (536)
T ss_pred HEEEEEEecCcceeEEECCCCCEeecccccccCcccceeeeccCCcHHHHHHHHHHhhccchhHHHhhCCccCchhHHHH
Confidence 8999999998 99999999999993100 011111299999999999999998653 5689999999999999999
Q ss_pred HHHHHHhCchhHhhhceeecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCC--
Q 009384 196 LLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGL-- 273 (536)
Q Consensus 196 l~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi-- 273 (536)
|+|+++|+||+|+++.+|++++|||.|+|||+.. ++.+.+ +++++ +|...+.|++++++.+|+
T Consensus 162 l~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~a--------~~~~l------~~~~w~~~~~~~l~~~g~~~ 226 (536)
T TIGR01234 162 ILQITEEDPAIYQAADRWIELADWIVAQLSGDIR-RGRCTA--------GYKAL------WHESWGYPSASFFDELNPIL 226 (536)
T ss_pred HHHHHhhChHHHHHHhhhcCHHHHHHHHHhCCcc-ccchhc--------cccee------ccccccCCCHHHHHHhcchh
Confidence 9999999999999999999999999999999975 333322 22332 233334459999999986
Q ss_pred ----CCcccccccccCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhcc
Q 009384 274 ----GDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAIC 349 (536)
Q Consensus 274 ----~~~~~~~~p~l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~ 349 (536)
|+.++ |+++++++++|+ |++++|+++||++|+||++|+||++|+++|+ |+.+||
T Consensus 227 ~~~lp~~~~-------p~i~~~g~~~G~-v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~~g------------- 284 (536)
T TIGR01234 227 NRHLPDKLF-------TDIWTAGEPAGT-LTPEWAQRTGLPEGVVVAVGNFDAHVGAVAA-GIAQPG------------- 284 (536)
T ss_pred hhhhhhhcC-------CceecCCCcccc-cCHHHHHHhCCCCCCeEEecchhHhhhhhcc-ccccCC-------------
Confidence 54333 389999999998 9999999999999999999999999999999 777787
Q ss_pred CeEEEEecccceeeeeeccccccCCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHH
Q 009384 350 HRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELL 429 (536)
Q Consensus 350 ~~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l 429 (536)
++++++|||.++..+.+++...+..+..+..+..++.|..+++++++|.+++||++.+...+ ........+.+.|+.|
T Consensus 285 -~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~l 362 (536)
T TIGR01234 285 -ALVKIMGTSTCHVLIGDKQRAVPGMCGVVDGGIVPGFIGYEAGQSAVGDIFAWFGKVCVPPE-LKTEANASQKQLHEAL 362 (536)
T ss_pred -cEEEEEccceEEEEecCccccCCceeeeccCcccCCeeEEeccccchHHHHHHHHHHhcchH-HHHHHHhcCCCHHHHH
Confidence 89999999999887776554333222111112346789999999999999999999874321 1111122234568888
Q ss_pred HHHHHhhhhhcCCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009384 430 NGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCN 509 (536)
Q Consensus 430 ~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~ 509 (536)
++.+++ +|+++++++|+|||.|||+|+||+++||+|+|++..|++.|+ +||++|||||.+|+++|.|+
T Consensus 363 ~~~a~~---------~p~g~~gllflP~l~Ger~P~~d~~arG~~~Gl~~~~~~~~~---~RAvlEgia~~~~~~l~~l~ 430 (536)
T TIGR01234 363 SEAAAK---------QPSGEHGLVALDWFNGNRSPLVDQRLKGVITGLTLATDAPLL---YRALIEATAFGTRMIMETFT 430 (536)
T ss_pred HHHHHh---------CCCCCCCeEecchhccCCCCCCCCcceEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 887765 457999999999999999999999999999999999999984 77999999999999999999
Q ss_pred hCCCCccEEEEecccccccccccccC
Q 009384 510 AHGHKVREHIFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 510 ~~g~~~~~I~~~GGgs~s~~~~~~~~ 535 (536)
+.|.++++|+++||+ .+||+-|+|.
T Consensus 431 ~~g~~~~~i~~~GGg-~a~s~~w~Qi 455 (536)
T TIGR01234 431 DSGVPVEELMAAGGI-ARKNPVIMQI 455 (536)
T ss_pred hcCCCcceEEEeCCc-cccCHHHHHH
Confidence 888889999999996 2566666664
No 6
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=7.1e-71 Score=597.87 Aligned_cols=403 Identities=19% Similarity=0.305 Sum_probs=342.1
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT- 132 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~- 132 (536)
+|+||||+|||++|++|+|.+|+++++.+.+++... .+||+||||++||+++++++++++++.+.++.+|.+||||+|
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~~Igis~~~ 84 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGISPDQIAAIGITNQR 84 (498)
T ss_pred CEEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEecCc
Confidence 689999999999999999999999999999987654 889999999999999999999999988877788999999998
Q ss_pred CCeEEEcCC-CCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhh
Q 009384 133 CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM 209 (536)
Q Consensus 133 ~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~ 209 (536)
+++|+||++ |+|+ +|+|+|+|.|+.++++++.+.. ++++++||+++++.++++||+||++|+||+|++
T Consensus 85 ~~~v~~D~~~G~pl---------~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~ 155 (498)
T PRK00047 85 ETTVVWDKETGRPI---------YNAIVWQDRRTADICEELKRDGYEDYIREKTGLVIDPYFSGTKIKWILDNVEGARER 155 (498)
T ss_pred ceEEEEECCCCcCC---------cccceecccchHHHHHHHHhccchhhHHHhhCCCCCccchHHHHHHHHHcCHhHHHH
Confidence 999999965 9999 9999999999999999998653 459999999999999999999999999999887
Q ss_pred hc----eeecchhHHHhhhhCCc-ccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCccccccccc
Q 009384 210 VF----RWMDLSDWLSYRATGDD-TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKI 284 (536)
Q Consensus 210 ~~----~~l~~~dyl~~~LTG~~-~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l 284 (536)
+. ++++++|||.|+|||.. ..++.|. |++|++ ||+++++|++++|+.+|||+.++ |
T Consensus 156 ~~~~~~~~~~~~dyl~~~LTG~~~~~~d~s~--------As~t~l------~d~~~~~W~~ell~~~gi~~~~l---P-- 216 (498)
T PRK00047 156 AEKGELLFGTIDTWLVWKLTGGKVHVTDYTN--------ASRTML------FNIHTLDWDDELLELLDIPRSML---P-- 216 (498)
T ss_pred HhcCCeEEeChHHhHhhhhcCCCeeEeechH--------Hhhhhc------cccccCccCHHHHHhcCCCHHHC---C--
Confidence 75 37889999999999752 2355553 345554 58999999999999999997544 4
Q ss_pred CccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceeee
Q 009384 285 GRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMA 364 (536)
Q Consensus 285 ~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~ 364 (536)
+++++++++|+ |+++ +|+.+||||++|++|++|+++|+ |+.+|| ++++++|||+++.+
T Consensus 217 --~i~~~g~~~G~-v~~~----~~l~~g~pV~~g~~D~~aa~~G~-G~~~~g--------------~~~~~~GTs~~~~~ 274 (498)
T PRK00047 217 --EVRPSSEVYGK-TNPY----GFFGGEVPIAGIAGDQQAALFGQ-LCFEPG--------------MAKNTYGTGCFMLM 274 (498)
T ss_pred --CccCCcccccc-cccc----ccCCCCceEEEEccHHHHHHHhC-cCCCCC--------------ceEEeeccceEEEE
Confidence 79999999997 9987 67779999999999999999999 777787 89999999998776
Q ss_pred ee-ccccccCCc-cccccccccCC--eEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhc
Q 009384 365 VS-RNKLFIPGV-WGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHER 440 (536)
Q Consensus 365 ~~-~~~~~~~~~-~~~~~~~~~~~--~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 440 (536)
.+ ++|..++.. ...+. +..++ .|+++++++++|.+++|+++.++.. ..++++++++++
T Consensus 275 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~g~~l~W~~~~~~~~------------~~~~~~~~~a~~----- 336 (498)
T PRK00047 275 NTGEKAVKSENGLLTTIA-WGIDGKVVYALEGSIFVAGSAIQWLRDGLKII------------SDASDSEALARK----- 336 (498)
T ss_pred ecCCccccCCCCceeEEE-EEcCCCcEEEEEeeHhhHHHHHHHHHHHhcCC------------CCHHHHHHHHhc-----
Confidence 66 456555432 21122 22344 7999999999999999999987421 113444444433
Q ss_pred CCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEEE
Q 009384 441 NSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKVREHI 519 (536)
Q Consensus 441 ~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~-~g~~~~~I~ 519 (536)
+ +++++++|+|||.|+|+|+||+++||+|+|++.+|++.|+ +||++|||||.+|+++|.|++ .|.++++|+
T Consensus 337 ----~-~~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~l---~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~ 408 (498)
T PRK00047 337 ----V-EDNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHI---IRATLESIAYQTRDVLDAMQADSGIRLKELR 408 (498)
T ss_pred ----C-CCCCCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 2 3778999999999999999999999999999999999885 679999999999999999986 588899999
Q ss_pred EecccccccccccccC
Q 009384 520 FHSVFYLSQSRTVRSF 535 (536)
Q Consensus 520 ~~GGgs~s~~~~~~~~ 535 (536)
++||+ +||+-|+|.
T Consensus 409 ~~GGg--a~s~~w~Qi 422 (498)
T PRK00047 409 VDGGA--VANNFLMQF 422 (498)
T ss_pred EecCc--ccCHHHHHH
Confidence 99996 788888764
No 7
>PLN02295 glycerol kinase
Probab=100.00 E-value=4.9e-71 Score=600.49 Aligned_cols=401 Identities=18% Similarity=0.298 Sum_probs=337.0
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC----EEEEEEc
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEE----VKGVGFA 130 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~----I~aIgis 130 (536)
|+||||+|||++|++|||.+|+++++.+.+++... .+||+||||++||+++++++++++++.+.++++ |.+||+|
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~~~i~aIg~s 80 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVDSGLKAIGIT 80 (512)
T ss_pred CEEEEecCCCceEEEEECCCCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCccccccceEEEEEe
Confidence 58999999999999999999999999999998654 899999999999999999999999988776666 7999999
Q ss_pred CC-CCeEEE-cCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc----hhHHhhhCCCCCCCChHHHHHHHHHhCc
Q 009384 131 AT-CSLVAV-DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPKLLWVKENLQ 204 (536)
Q Consensus 131 ~~-~~~v~v-D~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~kl~wl~~~~P 204 (536)
+| +++|+| |++|+|+ +|+|+|+|.|+.++++++++.. +.++++||+++++.++++||+||++|+|
T Consensus 81 ~q~~~~v~~dd~~G~pl---------~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P 151 (512)
T PLN02295 81 NQRETTVAWSKSTGRPL---------YNAIVWMDSRTSSICRRLEKELSGGRKHFVETCGLPISTYFSATKLLWLLENVD 151 (512)
T ss_pred cCcceEEEEECCCCCCc---------ccceeccccchHHHHHHHHhhccchhHHHHHhhCCcCCcccHHHHHHHHHhcCH
Confidence 98 999999 5889999 9999999999999999998752 2466999999999999999999999999
Q ss_pred hhHhhh----ceeecchhHHHhhhhCCc----ccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCc
Q 009384 205 ESWSMV----FRWMDLSDWLSYRATGDD----TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDL 276 (536)
Q Consensus 205 e~~~~~----~~~l~~~dyl~~~LTG~~----~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~ 276 (536)
|+|+++ .+|++++|||.|+|||+. ..++.|. |++|++ ||+++++||+++++.+|||..
T Consensus 152 ~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~td~s~--------As~t~l------~D~~~~~W~~ell~~~gi~~~ 217 (512)
T PLN02295 152 AVKEAVKSGDALFGTIDSWLIWNLTGGASGGVHVTDVTN--------ASRTML------MNLKTLDWDKPTLEALGIPAE 217 (512)
T ss_pred HHHHhhhcCceEEEcHHHHHHHHhhCCCCCCeEEeeHHH--------hHHhhc------cCcccCcCCHHHHHHcCCCHH
Confidence 999654 589999999999999942 1355554 445554 589999999999999999975
Q ss_pred ccccccccCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEe
Q 009384 277 IDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVC 356 (536)
Q Consensus 277 ~~~~~p~l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~ 356 (536)
++ | +++++++++|+ |++++++ +|+||++|++|++|+++|+ |+ +|| ++.+++
T Consensus 218 ~l---P----~l~~~~~~~G~-v~~~~a~-----~g~pV~~g~~D~~aa~~G~-G~-~~g--------------~~~~~~ 268 (512)
T PLN02295 218 IL---P----KIVSNSEVIGT-IAKGWPL-----AGVPIAGCLGDQHAAMLGQ-RC-RPG--------------EAKSTY 268 (512)
T ss_pred HC---C----CcccCccceec-ccccccc-----CCCcEEEEechHHHHHhhC-cC-CCC--------------CeEEEE
Confidence 54 4 79999999997 9987764 4999999999999999999 77 787 899999
Q ss_pred cccceeeeeeccc-cccC-Cccccccccc---cCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHH
Q 009384 357 GTSTCHMAVSRNK-LFIP-GVWGPFWSAM---VPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNG 431 (536)
Q Consensus 357 GTs~~~~~~~~~~-~~~~-~~~~~~~~~~---~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 431 (536)
||++.+.+.+..+ ..++ +....+.+.. .++.|+++++++++|.+++||++.+... ..++++++
T Consensus 269 GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~------------~~~~~~~~ 336 (512)
T PLN02295 269 GTGCFILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGSVAIAGAAVQWLRDNLGII------------KSASEIEA 336 (512)
T ss_pred cccceeeeecCCccccCCCCceEEEEEEecCCCCceEEEechhhhhHHHHHHHHHHcCCC------------CCHHHHHH
Confidence 9998866655542 3333 2221122111 2788999999999999999999987421 12445555
Q ss_pred HHHhhhhhcCCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 009384 432 TLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH 511 (536)
Q Consensus 432 ~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~ 511 (536)
++++ + ++++|++|+|||.|+|+|+||+++||+|+|++..|++.|+ +||++|||||.+|++++.|++.
T Consensus 337 ~a~~---------~-~g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~r~~l~~l~~~ 403 (512)
T PLN02295 337 LAAT---------V-DDTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHI---ARAVLESMCFQVKDVLDAMRKD 403 (512)
T ss_pred HHHh---------C-CCCCceEEeCcccCCCCCcCCCCCCEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHhh
Confidence 5543 3 3778999999999999999999999999999999999995 6799999999999999999865
Q ss_pred ------CCCccEEEEecccccccccccccC
Q 009384 512 ------GHKVREHIFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 512 ------g~~~~~I~~~GGgs~s~~~~~~~~ 535 (536)
+.++++|+++||+ +||+-|+|.
T Consensus 404 ~~~~~~~~~~~~i~~~GGg--a~s~~w~Qi 431 (512)
T PLN02295 404 AGEEKSHKGLFLLRVDGGA--TANNLLMQI 431 (512)
T ss_pred hcccccCCCcceEEEeccc--hhCHHHHHH
Confidence 3368899999997 788888875
No 8
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=100.00 E-value=1.3e-70 Score=566.66 Aligned_cols=443 Identities=44% Similarity=0.785 Sum_probs=389.2
Q ss_pred CeEEEEEccccceeEEEEcCC-CCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 55 SVFLGVDVGTGSARAGLFDES-GKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~-g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
+|+||||+||.|.|+.|||.. |++++.+.++|++.. .++..||+++++|++++++++++++++++++.+|++|||+++
T Consensus 3 ~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V~gIGvDaT 82 (544)
T COG1069 3 AYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADVVGIGVDAT 82 (544)
T ss_pred cEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEcce
Confidence 699999999999999999964 999999999999887 788899999999999999999999999999999999999999
Q ss_pred CCeEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCchhHHhhhCCCCCCCChHHHHHHHHHhCchhHhhhce
Q 009384 133 CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFR 212 (536)
Q Consensus 133 ~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~ 212 (536)
+++|++|++|+|+.-........++|.|+|+|+.+++++++...++++.+.|..++|.+-.|||+|+++|.|++|+|+.+
T Consensus 83 cSlvv~d~~g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in~~~~~~L~~~GG~~SpEm~~PKlmwl~~~~p~~~~~a~~ 162 (544)
T COG1069 83 CSLVVIDRDGNPLAVLPEFPNNPNVILWMDHRAVEEAEEINATCHPVLDYYGGKISPEMMIPKLMWLKREAPAVWERAAH 162 (544)
T ss_pred eeeEEECCCCCeeccCCCCCCCCceEEeccchHHHHHHHHHhhchHHHHhhCCccChhhhHHHHHHHHhhChHHHHHhhh
Confidence 99999999999997666655555899999999999999999887789999999999999999999999999999999999
Q ss_pred eecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccccCccccCCC
Q 009384 213 WMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPG 292 (536)
Q Consensus 213 ~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l~~~i~~~g 292 (536)
|+.+.|||.|+|||....|.++..|+|+|+ -.+.+.|++++++.+|++..... ..+|+.++++.|
T Consensus 163 ~fdl~D~l~~~ltG~~~Rs~Ct~~~Kw~~~--------------~~~~~~~~~~~f~~ig~~~l~~~-~~~l~~~i~~~g 227 (544)
T COG1069 163 IFDLADWLTWKLTGSIARSRCTAGCKWNWL--------------EHEGGLWSADFFDKIGLDDLREL-DSKLPEDIVPAG 227 (544)
T ss_pred hhhHHHHHHHHhhcchhhccccceeeeeee--------------ccccCCCCHHHHHhcCchhhhcc-cccCCcccccCC
Confidence 999999999999999989999999999874 22567799999999999864431 145777999999
Q ss_pred CcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceeeeeecccccc
Q 009384 293 HPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFI 372 (536)
Q Consensus 293 ~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~~~~~~~~ 372 (536)
+++|. +++++|+++||++++.|..|..|.+++++|+++. .|+ .++.++|||+|.+..++++.+.
T Consensus 228 ~~vg~-Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~-~~~--------------~l~~I~GTStC~m~~s~~~~~v 291 (544)
T COG1069 228 EPVGG-LTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGA-QPG--------------SLAMIAGTSTCHMLLSEKPRFV 291 (544)
T ss_pred ccccc-cCHHHHHHhCCCCCcEEeccceeccccccccccC-CCC--------------eEEEEeccceEEEEecCCceec
Confidence 99996 9999999999999999999999999999999444 366 8999999999999999999999
Q ss_pred CCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCCCCCCCCe
Q 009384 373 PGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDI 452 (536)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl 452 (536)
+++|++|+....||.|++|+++++.|..++||.+.+.-..+........+...|+.+++.++.+.+.... ++++.+++
T Consensus 292 ~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~l~~~l 369 (544)
T COG1069 292 PGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAA--IPPLASGL 369 (544)
T ss_pred CccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhc--cCcccCCc
Confidence 9999999999999999999999999999999999852211111111112334555555555544332211 45789999
Q ss_pred EEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccccccccccc
Q 009384 453 HVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTV 532 (536)
Q Consensus 453 ~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~ 532 (536)
+++|+|.|+|+|+.||+++|+|+|++++|++++++.+|+|.+|++||..|+++|.|++.|+++++|+++||. -|++-+
T Consensus 370 ~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~Id~l~~sGG~--~KN~ll 447 (544)
T COG1069 370 HVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIAIDTLFASGGI--RKNPLL 447 (544)
T ss_pred EecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCeeeEEEecCCc--ccCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 444433
No 9
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=7.5e-71 Score=560.73 Aligned_cols=407 Identities=22% Similarity=0.359 Sum_probs=344.0
Q ss_pred CCeEEEEEccccceeEEEEcCCCCEEEEEEeec-ccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~-~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
.+|+++||.||||+|+++||.+|++++..+.++ ++||+|||+||||.+||.++..++++++.++++.+.+|.+||||.|
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~iaaIGITNQ 83 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIAAIGITNQ 83 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccceEEEEeecc
Confidence 479999999999999999999999999999999 5667999999999999999999999999999999999999999999
Q ss_pred -CCeEEEcCC-CCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHh
Q 009384 133 -CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS 208 (536)
Q Consensus 133 -~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~ 208 (536)
+++|+||++ |+|+ .|+|.|+|+|+.+.+++|++.. +.+.++||..++|.|++.|+.|+.+|.|...+
T Consensus 84 RETtvvWdk~tG~Pi---------~naIvWQdrRTa~~c~~L~~~g~~~~i~~kTGL~~dpYFSatKi~WiLdnv~g~r~ 154 (499)
T COG0554 84 RETTVVWDKETGKPI---------YNAIVWQDRRTADICEELKADGYEERIREKTGLVLDPYFSATKIKWILDNVPGARE 154 (499)
T ss_pred ceeEEEEeCCCCCCc---------ccceeeeccchHHHHHHHHhcchhhhhhhhcCCccCCCccchhhhHHHhhChhhhh
Confidence 999999987 9999 8999999999999999999874 67889999999999999999999999998777
Q ss_pred hh----ceeecchhHHHhhhhCCcc-cccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccc
Q 009384 209 MV----FRWMDLSDWLSYRATGDDT-RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK 283 (536)
Q Consensus 209 ~~----~~~l~~~dyl~~~LTG~~~-~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~ 283 (536)
|+ -.|.+++.||.|+|||... .||.| +||||+|| |+++.+||+++|+.||||..++ |
T Consensus 155 ~ae~Gel~fGTiDtWLiw~LTgg~~h~TD~s--------NASRT~L~------ni~~l~WD~elL~il~Ip~~~L---P- 216 (499)
T COG0554 155 RAEKGELLFGTIDTWLIWKLTGGKVHVTDYS--------NASRTMLF------NIHSLEWDDELLELLGIPRSML---P- 216 (499)
T ss_pred HhhcCCeEEecchhhheeeccCCceeccccc--------hhHHHhcc------cccccCCCHHHHHHhCCChHhC---c-
Confidence 76 4699999999999999664 56766 57899976 7789999999999999999766 5
Q ss_pred cCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceee
Q 009384 284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM 363 (536)
Q Consensus 284 l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~ 363 (536)
++.++.++.|. +.. -.+...+||....||||||++|. +|.+|| ++|+||||+++ +..++|+-.+
T Consensus 217 ---ev~~ss~~~G~-t~~-----~~~g~~vPI~g~~GDQQAALfGq-~c~~pG---~~K~TYGTG~F-~l~ntG~~~~-- 280 (499)
T COG0554 217 ---EVRPSSEIYGV-TGI-----GFLGAEVPITGVAGDQQAALFGQ-GCFEPG---MAKNTYGTGCF-LLMNTGEKPV-- 280 (499)
T ss_pred ---ccccccccccc-ccc-----cccCCceeeccccchhHHHHhhc-ccCCcC---cccccccccee-eeeccCCccc--
Confidence 78888999995 433 23456799999999999999999 778899 99999999997 6777776422
Q ss_pred eeeccccccCCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCC
Q 009384 364 AVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSP 443 (536)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p 443 (536)
.++..+..--.|. ....-.|.+||.+..+|++++||++.+... +...+.+..+++.
T Consensus 281 -~S~~~LLtTIa~~----l~gk~~YALEGsif~aGaavqWLrd~L~~i------------~~a~~~e~~A~~~------- 336 (499)
T COG0554 281 -RSENGLLTTIAWG----LDGKVTYALEGSIFVAGAAVQWLRDGLGLI------------DDASDSEELAESV------- 336 (499)
T ss_pred -cCCCCceeEEEec----cCCeEEEEEecceeehhhHHHHHHHhcCcc------------CchhHHHHHHhcc-------
Confidence 1222222112222 111336999999999999999999976431 2223334444431
Q ss_pred CCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEec
Q 009384 444 FVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKVREHIFHS 522 (536)
Q Consensus 444 ~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~-~g~~~~~I~~~G 522 (536)
..++|++|+|.|.|.++||||+++||.|+||+..++++|++ ||++|||||..+++++.|++ .|.++++++|.|
T Consensus 337 ---~~~~gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt~~~hi~---RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDG 410 (499)
T COG0554 337 ---EDNGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIA---RATLESIAYQTRDVLEAMEKDSGIKLTRLRVDG 410 (499)
T ss_pred ---CCCCceEEEcccccCCCCCcCcccceeEEeeCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcC
Confidence 35679999999999999999999999999999999999965 59999999999999999998 677899999999
Q ss_pred ccccccccccccC
Q 009384 523 VFYLSQSRTVRSF 535 (536)
Q Consensus 523 Ggs~s~~~~~~~~ 535 (536)
|. ++|+=+-||
T Consensus 411 G~--s~n~~lmQf 421 (499)
T COG0554 411 GA--SRNNFLMQF 421 (499)
T ss_pred cc--ccchhHHHH
Confidence 98 555555554
No 10
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=3.8e-70 Score=592.75 Aligned_cols=404 Identities=20% Similarity=0.344 Sum_probs=341.7
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCC--CEEEEEEcC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGE--EVKGVGFAA 131 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~--~I~aIgis~ 131 (536)
+|+||||+|||++|++|+|.+|++++..+.+++... .+||+||||++||+++++++++++++.+..+. +|.+||||+
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~~~I~aIgis~ 81 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPSFKIKAIGITN 81 (504)
T ss_pred cEEEEEecCCCceEEEEECCCCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCCccCceEEEEeec
Confidence 389999999999999999999999999999998655 79999999999999999999999998765555 899999999
Q ss_pred C-CCeEEEcC-CCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc---hhHHhhhCCCCCCCChHHHHHHHHHhCchh
Q 009384 132 T-CSLVAVDA-DGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN---SPVLQYCGGAVSPEMQPPKLLWVKENLQES 206 (536)
Q Consensus 132 ~-~~~v~vD~-~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~---~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~ 206 (536)
| +++|+||+ +|+|+ +|+|+|+|.|+.++++++.+.. +.++++||+++++.++++||+||++|+|++
T Consensus 82 q~~~~v~~D~~~g~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~ 152 (504)
T PTZ00294 82 QRETVVAWDKVTGKPL---------YNAIVWLDTRTYDIVNELTKKYGGSNFFQKITGLPISTYFSAFKIRWMLENVPAV 152 (504)
T ss_pred CcceEEEEECCCCCCc---------ccceeecchhhHHHHHHHHhhcCcchHHHHhhCCcCCccchHHHHHHHHhcCHHH
Confidence 8 99999987 59999 8999999999999999998764 346699999999999999999999999999
Q ss_pred Hhhhce----eecchhHHHhhhhC--CcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCccccc
Q 009384 207 WSMVFR----WMDLSDWLSYRATG--DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGH 280 (536)
Q Consensus 207 ~~~~~~----~l~~~dyl~~~LTG--~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~ 280 (536)
|+++++ +++++|||.|+||| +.. ++.|. |++|++ ||+++++|++++++.+||+..++
T Consensus 153 ~~~~~~~~~~~~~~~dyl~~~LTG~~~~~-~d~s~--------As~tgl------~D~~~~~W~~~ll~~~gi~~~~L-- 215 (504)
T PTZ00294 153 KDAVKEGTLLFGTIDTWLIWNLTGGKSHV-TDVTN--------ASRTFL------MNIKTLKWDEELLNKFGIPKETL-- 215 (504)
T ss_pred HHhhhcCCeEEEcHHHHHHHHhcCCceEE-EEhhh--------hHHhhc------cCcccCccCHHHHHHhCCCHHHC--
Confidence 996655 99999999999999 654 44443 445664 58999999999999999997544
Q ss_pred ccccCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccc
Q 009384 281 HAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTST 360 (536)
Q Consensus 281 ~p~l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~ 360 (536)
| +++++++++|+ |++ +.+|+++|+||++|++|++|+++|+ |+.++| ++.+++||++
T Consensus 216 -P----~v~~~~~~~G~-l~~---~~~~~~~g~pV~~g~~D~~aa~~G~-g~~~~g--------------~~~~~~GTs~ 271 (504)
T PTZ00294 216 -P----EIKSSSENFGT-ISG---EAVPLLEGVPITGCIGDQQAALIGH-GCFEKG--------------DAKNTYGTGC 271 (504)
T ss_pred -C----CccCCccccCc-cch---hhcCCCCCCcEEEEecHHHHHHHhC-cCCCCC--------------ceEEeeccce
Confidence 4 79999999998 984 4678889999999999999999999 776677 8999999998
Q ss_pred eeeeee-ccccccCC-cccccccccc---CCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHh
Q 009384 361 CHMAVS-RNKLFIPG-VWGPFWSAMV---PKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLES 435 (536)
Q Consensus 361 ~~~~~~-~~~~~~~~-~~~~~~~~~~---~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 435 (536)
++.+.+ +++..++. .+..+++... ++.|++++++.++|.+++|+++.+... ..|+.+++++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~------------~~~~~~~~~a~~ 339 (504)
T PTZ00294 272 FLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIAVAGAGVEWLRDNMGLI------------SHPSEIEKLARS 339 (504)
T ss_pred EEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechhhhhHHHHHHHHHHhCCC------------CCHHHHHHHHHh
Confidence 865544 34444442 2222222222 448999999999999999999987421 125556666554
Q ss_pred hhhhcCCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC
Q 009384 436 MIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK 514 (536)
Q Consensus 436 ~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~-~g~~ 514 (536)
+ +++++++|+|||.|+|+|+||+++||.|+|++.+|++.|+ +||++|||||.+|++++.|++ .|.+
T Consensus 340 ---------~-~g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~i---~rAvlEgia~~~r~~~~~l~~~~g~~ 406 (504)
T PTZ00294 340 ---------V-KDTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAHI---VRAALEAIALQTNDVIESMEKDAGIE 406 (504)
T ss_pred ---------C-CCCCCEEEeCcccCCCCCCCCCCCCEEEEccCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3 3788999999999999999999999999999999999995 669999999999999999997 5888
Q ss_pred ccEEEEecccccccccccccC
Q 009384 515 VREHIFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 515 ~~~I~~~GGgs~s~~~~~~~~ 535 (536)
+++|+++||+ +||+.|+|.
T Consensus 407 ~~~i~~~GG~--a~s~~w~Qi 425 (504)
T PTZ00294 407 LNSLRVDGGL--TKNKLLMQF 425 (504)
T ss_pred cceEEEeccc--ccCHHHHHH
Confidence 9999999998 677877764
No 11
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=4.8e-70 Score=594.12 Aligned_cols=414 Identities=20% Similarity=0.269 Sum_probs=351.7
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecccc---cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW---KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~---~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~ 131 (536)
+|+||||+|||++|++|||.+|++++..+.+++.. +.+||+||||++||+++++++++++++.+....+|.+||+|+
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~~~~I~aI~~s~ 82 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIPASDIAAVSATS 82 (520)
T ss_pred cEEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEC
Confidence 48999999999999999999999999998887643 268999999999999999999999988777777899999999
Q ss_pred C-CCeEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc----hhHHhhhCCCCCCCChHHHHHHHHHhCchh
Q 009384 132 T-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPKLLWVKENLQES 206 (536)
Q Consensus 132 ~-~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~ 206 (536)
| +++|+||++|+|+ .+ +.|.|.|+.++++++++.. ++++++||.++ +.++++||+|+++|+||+
T Consensus 83 ~~~~~v~~D~~g~pl---------~~-~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~-~~~~~~kl~Wl~~~~pe~ 151 (520)
T PRK10939 83 MREGIVLYDRNGTEI---------WA-CANVDARASREVSELKELHNNFEEEVYRCSGQTL-ALGALPRLLWLAHHRPDI 151 (520)
T ss_pred CcccEEEECCCCCEe---------eC-CcCCCcccHHHHHHHHHhcChHHHHHHHHhCCcC-CcchHHHHHHHHHcCcHH
Confidence 8 9999999999999 44 5799999999999998653 47899999875 678999999999999999
Q ss_pred HhhhceeecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccccCc
Q 009384 207 WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGR 286 (536)
Q Consensus 207 ~~~~~~~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l~~ 286 (536)
|+|+.+|++++|||.|+|||+.. ++.|. |++|++ ||+++++|++++++.+||++.++ |
T Consensus 152 ~~~~~~~~~~~dyl~~~LTG~~~-~d~s~--------As~tgl------~d~~~~~W~~~ll~~~gi~~~~l---P---- 209 (520)
T PRK10939 152 YRQAHTITMISDWIAYMLSGELA-VDPSN--------AGTTGL------LDLVTRDWDPALLEMAGLRADIL---P---- 209 (520)
T ss_pred HHHhheEechhHhhhheeeCcee-eEhhh--------hhceee------eecCCCCCCHHHHHHcCCCHHHC---C----
Confidence 99999999999999999999975 44443 345554 48899999999999999997554 4
Q ss_pred cccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceeeeee
Q 009384 287 SVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVS 366 (536)
Q Consensus 287 ~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~~ 366 (536)
+++++++++|+ |++++|+++||++|+||++|++|++|+++|+ |+.+|| ++++++|||.++.+++
T Consensus 210 ~i~~~g~~~G~-v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~~g--------------~~~~~~GTs~~~~~~~ 273 (520)
T PRK10939 210 PVKETGTVLGH-VTAKAAAETGLRAGTPVVMGGGDVQLGCLGL-GVVRPG--------------QTAVLGGTFWQQVVNL 273 (520)
T ss_pred CCccCCceeee-ecHHHHHhhCCCCCCcEEEeCchHHHHHhhc-CcccCC--------------cEEEeecCcceeEEec
Confidence 79999999998 9999999999999999999999999999999 777787 7999999999887777
Q ss_pred ccccccCCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCCC
Q 009384 367 RNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA 446 (536)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~ 446 (536)
+++..++........+..++.|++++.++++|.+++||+++++..+.. .++..+.+.|++|++++++ +|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~--~~~~~~~~~~~~l~~~a~~---------~~ 342 (520)
T PRK10939 274 PAPVTDPNMNIRINPHVIPGMVQAESISFFTGLTMRWFRDAFCAEEKL--LAERLGIDAYSLLEEMASR---------VP 342 (520)
T ss_pred cccccCccccceeceeeeCCcceEeeeeccceeeeehHHhhhchHHHH--HHHhcCCCHHHHHHHHHhh---------CC
Confidence 776555532111233566888999999999999999999987543221 1222345678999888765 45
Q ss_pred CCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEec
Q 009384 447 ALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDS---SEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKVREHIFHS 522 (536)
Q Consensus 447 ~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~---~~~~~~~~~rAvlEgia~~~r~~le~l~~-~g~~~~~I~~~G 522 (536)
++++++ +|||.|+|.|.+++++||+|+|++.+| ++.| ++||++|||||.+|++++.+++ .|.++++|+++|
T Consensus 343 ~g~~gl--~P~l~g~~~~~~~~~~~g~f~Gl~~~~~~~~~~~---~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~G 417 (520)
T PRK10939 343 VGSHGI--IPIFSDVMRFKSWYHAAPSFINLSIDPEKCNKAT---LFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAG 417 (520)
T ss_pred CCCCCC--cccccCCCCCCCCcccceeEEccccCcccCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 788887 699999986555568999999999987 6777 5779999999999999999987 488899999999
Q ss_pred ccccccccccccC
Q 009384 523 VFYLSQSRTVRSF 535 (536)
Q Consensus 523 Ggs~s~~~~~~~~ 535 (536)
|+ +||+.|+|+
T Consensus 418 Gg--a~s~~w~Qi 428 (520)
T PRK10939 418 GG--SKGKLWSQI 428 (520)
T ss_pred Cc--ccCHHHHHH
Confidence 96 788888875
No 12
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-69 Score=586.34 Aligned_cols=412 Identities=27% Similarity=0.410 Sum_probs=357.5
Q ss_pred CCCCeEEEEEccccceeEEEEcCC-CCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 009384 52 RSRSVFLGVDVGTGSARAGLFDES-GKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (536)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~~-g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgi 129 (536)
|.++|+||||+|||++|++++|.+ |++++..+.+++..+ .+||.||||++||+++++++++++++..++..+|.+|+|
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~~~I~aI~i 80 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESKIDPDAIAAIGI 80 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcccChhhceEEEE
Confidence 345799999999999999999998 899999999998774 999999999999999999999999998777889999999
Q ss_pred cCC-CCeEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchh
Q 009384 130 AAT-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQES 206 (536)
Q Consensus 130 s~~-~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~ 206 (536)
|+| |++|++|++|+|| +|+|+|+|.|+.++++++.+.. +..|..||+++.+.++++||+|+++|+||+
T Consensus 81 s~~~~g~vllD~~g~~L---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~t~~~~~~~~t~~kL~Wl~~~~P~~ 151 (502)
T COG1070 81 SGQGHGLVLLDANGEPL---------RPAILWNDTRAAEEVEELEERLGGEALYARTGLQAMPGFTAPKLLWLKENEPDL 151 (502)
T ss_pred eccccceEEECCCCCCc---------cccceecchhhHHHHHHHHhhccchhhhhhcCCCcCccccHHHHHHHHhcCcHH
Confidence 998 9999999999999 8999999999999999999875 577888999999999999999999999999
Q ss_pred HhhhceeecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCC-cccccccccC
Q 009384 207 WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGD-LIDGHHAKIG 285 (536)
Q Consensus 207 ~~~~~~~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~-~~~~~~p~l~ 285 (536)
|+|+.+|++++|||.|+|||+.+ ++.|++ +.|++ ||+++++|+.++|+.+|+++ .++ |
T Consensus 152 ~~k~~~il~~~dyl~~rLTG~~~-~e~s~a--------s~t~l------~d~~~~~w~~~~l~~~gl~~~~~l---p--- 210 (502)
T COG1070 152 FAKAAKILLIKDYLRYRLTGEFA-TEISDA--------SGTGL------LDIRTRKWDWELLAALGLPERDLL---P--- 210 (502)
T ss_pred HHhhhheechHHHHHHHHhCCcc-cccccc--------ccccc------ccccccccCHHHHHHcCCChHHhC---C---
Confidence 99999999999999999999985 444432 34454 58999999999999999995 544 4
Q ss_pred ccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceeeee
Q 009384 286 RSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAV 365 (536)
Q Consensus 286 ~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~ 365 (536)
+++++++++|. |++++|+++||++++||++|+||++++++|+ |+.++| ++..++||+..+...
T Consensus 211 -~vv~~g~~~G~-l~~e~A~~~Gl~~~~pV~~G~~D~~~a~lg~-g~~~~g--------------~~~~~~gts~~~~~~ 273 (502)
T COG1070 211 -PVVEPGEVLGT-LTPEAAEELGLPAGTPVVVGGGDNAAAALGA-GAVDPG--------------DVSSSTGTSGVVRAA 273 (502)
T ss_pred -CccCccceecc-ccHHHHHHhCCCCCCeEEECCchHHHHhccC-CCcCCC--------------cEEEEeccccEEeee
Confidence 89999999997 9999999999999999999999999999999 888777 689999999998888
Q ss_pred eccccccCCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCC
Q 009384 366 SRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFV 445 (536)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~ 445 (536)
++.+..++......+++..++.|+.++...++|.+++|+++.+...+ .+.++...+... + .
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~w~~~~~~~~~------------~~~~~~~~~~~~------~-~ 334 (502)
T COG1070 274 TDKPLDDPRGSIYTFCLGLPGWFIVMGANNTGGWLLEWLRELFGLAE------------SYPELLEEALAV------P-A 334 (502)
T ss_pred ccccccCCccceeeecccCCCeEEEEEEecccHHHHHHHHHHhcccc------------CcHHHHHHHHhc------c-C
Confidence 88766555333223445567888899999999999999999875421 122222222221 1 3
Q ss_pred CCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccc
Q 009384 446 AALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKVREHIFHSVF 524 (536)
Q Consensus 446 ~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~-g~~~~~I~~~GGg 524 (536)
+.++.++.|+|||.|||.|.++|.+||.|.|++..|+++|+ +||++||++|.+++.++.|++. |.++++|+++|||
T Consensus 335 ~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~~~~~~~~~l---~ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGg 411 (502)
T COG1070 335 PAGAIGLLFLPYLSGERGPHADPAARGGFVGLTLPHTRAHL---ARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGG 411 (502)
T ss_pred CCCCCCcEEeccccCCcCCCCCccceeEEEccccccCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCc
Confidence 46789999999999999999999999999999999999885 6699999999999999999996 8899999999998
Q ss_pred cccccccccc
Q 009384 525 YLSQSRTVRS 534 (536)
Q Consensus 525 s~s~~~~~~~ 534 (536)
+||+.|+|
T Consensus 412 --ars~~w~Q 419 (502)
T COG1070 412 --ARSPLWLQ 419 (502)
T ss_pred --ccCHHHHH
Confidence 66666665
No 13
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=1.5e-69 Score=583.62 Aligned_cols=397 Identities=20% Similarity=0.217 Sum_probs=338.0
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeeccc--c-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQI--W-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~--~-~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~ 131 (536)
+|+||||+|||++|++|||.+|++++..+.+++. . +.+||+||||++||+++++++++++++. ...+|.+||||+
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~--~~~~I~~I~is~ 79 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL--TECHIRGITVTT 79 (470)
T ss_pred ceEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC--CccceEEEEEec
Confidence 5899999999999999999999999999998763 2 3789999999999999999999999864 245799999999
Q ss_pred C-CCeEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHh
Q 009384 132 T-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS 208 (536)
Q Consensus 132 ~-~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~ 208 (536)
| +++++||++|+|+ +|+|+|+|.|+.++++++++.. ++++++||+++.+.++++||+|+++|+|++|+
T Consensus 80 ~~~~~v~~D~~G~pl---------~p~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P~~~~ 150 (470)
T PRK10331 80 FGVDGALVDKQGNLL---------YPIISWKCPRTAAVMENIERYISAQQLQQISGVGAFSFNTLYKLVWLKENHPQLLE 150 (470)
T ss_pred cccceEEECCCcCCc---------cCceeecCCCcHHHHHHHHHhcCHHHHHhhhCCCccccchHHHHHHHHHhCHHHHH
Confidence 8 9999999999999 9999999999999999998764 67899999999999999999999999999999
Q ss_pred hhceeecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccccCccc
Q 009384 209 MVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV 288 (536)
Q Consensus 209 ~~~~~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l~~~i 288 (536)
++++|++++|||.|+|||+.. ++.|. |++|++ ||+++++|++++++.+||++.++ | ++
T Consensus 151 ~~~~~l~~~dyl~~~LTG~~~-~d~s~--------As~t~l------~d~~~~~W~~ell~~~gi~~~~l---P----~i 208 (470)
T PRK10331 151 QAHAWLFISSLINHRLTGEFT-TDITM--------AGTSQM------LDIQQRDFSPEILQATGLSRRLF---P----RL 208 (470)
T ss_pred HhhhhcCHHHHHHHhhcCccc-cchhh--------ccceee------eecccCCCCHHHHHHcCCCHHHC---C----Cc
Confidence 999999999999999999975 44443 344554 58999999999999999998544 4 79
Q ss_pred cCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceeeeeecc
Q 009384 289 AFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRN 368 (536)
Q Consensus 289 ~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~~~~ 368 (536)
+++++++|+ |++++|+++||++|+||++|+||++|+++|+ |+ .+| ++++++|||+++..++++
T Consensus 209 ~~~g~~~G~-v~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~-g~-~~g--------------~~~~~~GT~~~~~~~~~~ 271 (470)
T PRK10331 209 VEAGEQIGT-LQPSAAALLGLPVGIPVISAGHDTQFALFGS-GA-GQN--------------QPVLSSGTWEILMVRSAQ 271 (470)
T ss_pred ccccccccc-cCHHHHHHhCCCCCCeEEEccccHHHHHhCC-CC-CCC--------------CEEEecchhhhheeecCC
Confidence 999999998 9999999999999999999999999999999 66 466 799999999998888776
Q ss_pred ccccCC--cccc-ccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCC
Q 009384 369 KLFIPG--VWGP-FWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFV 445 (536)
Q Consensus 369 ~~~~~~--~~~~-~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~ 445 (536)
+..+.. .... +..+..++.|..++....+ .+++|+++++.. +.+.|+.|++++++ +
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~W~~~~~~~-----------~~~~y~~l~~~a~~---------~ 330 (470)
T PRK10331 272 VDTSLLSQYAGSTCELDSQSGLYNPGMQWLAS-GVLEWVRKLFWT-----------AETPYQTMIEEARA---------I 330 (470)
T ss_pred CcccccccccccceeccccCceeeechhhHHH-HHHHHHHHHhcc-----------cCchHHHHHHHHhc---------C
Confidence 654332 1111 1112345667665544444 489999998742 12458888887765 4
Q ss_pred CCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccc
Q 009384 446 AALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKVREHIFHSVF 524 (536)
Q Consensus 446 ~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~-g~~~~~I~~~GGg 524 (536)
|+++++++|+|+|.|+| ||+|+|++..|+++|+ +||++|||||.+|++++.|++. +.++++|+++||+
T Consensus 331 ~~g~~gl~~~p~~~g~~--------rg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGg 399 (470)
T PRK10331 331 PPGADGVKMQCDLLACQ--------NAGWQGVTLNTTRGHF---YRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGG 399 (470)
T ss_pred CCCCCceEecccccccC--------ceeEECCCCCcCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEccc
Confidence 57899999999999987 8999999999999995 6799999999999999999986 5678999999997
Q ss_pred ccccccccccC
Q 009384 525 YLSQSRTVRSF 535 (536)
Q Consensus 525 s~s~~~~~~~~ 535 (536)
+||+-|+|.
T Consensus 400 --a~s~~w~Qi 408 (470)
T PRK10331 400 --SRNALWNQI 408 (470)
T ss_pred --ccCHHHHHH
Confidence 788888774
No 14
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=9.6e-69 Score=580.04 Aligned_cols=404 Identities=26% Similarity=0.421 Sum_probs=355.8
Q ss_pred EEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-CCe
Q 009384 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-CSL 135 (536)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~-~~~ 135 (536)
||||+|||++|++|+|.+|+++++.+.+++... .+||.|||++++|+.+++++++++++.+..+.+|.+|||++| +|+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gIgvs~~~~g~ 80 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMGQDIKGIGISGQMHGL 80 (481)
T ss_pred CceeecCcceEEEEECCCCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCCcee
Confidence 689999999999999999999999999998654 899999999999999999999999988777789999999998 999
Q ss_pred EEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhhhcee
Q 009384 136 VAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRW 213 (536)
Q Consensus 136 v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~ 213 (536)
|+||++|+++ .|.+.|+|.|+.++++++++.. +.+++.+|+...+.++++||+|+++|+|++++++.+|
T Consensus 81 v~~d~~g~~l---------~~~i~W~D~r~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~kl~wl~~~~p~~~~~~~~~ 151 (481)
T TIGR01312 81 VLLDANGEVL---------RPAILWNDTRTAQECEELEAELGDERVLEITGNLALPGFTAPKLLWVRKHEPEVFARIAKV 151 (481)
T ss_pred EEECCCcCCC---------ccchhhhccchHHHHHHHHHhcCHhHHHHHHCCCCCccchHHHHHHHHHcChHHHHHhhee
Confidence 9999999999 8999999999999888887654 5788999999999999999999999999999999999
Q ss_pred ecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccccCccccCCCC
Q 009384 214 MDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 293 (536)
Q Consensus 214 l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l~~~i~~~g~ 293 (536)
++++|||.|+|||+.. ++.+. |++|++ ||+++++|++++|+.+|+|+.++ | +++++++
T Consensus 152 ~~~~~yi~~~LtG~~~-~d~t~--------as~tgl------~d~~~~~W~~~~l~~~gi~~~~L---p----~iv~~~~ 209 (481)
T TIGR01312 152 MLPKDYLRYRLTGEYV-TEYSD--------ASGTGW------FDVAKRAWSKELLDALDLPESQL---P----ELIESSE 209 (481)
T ss_pred eCchHHHhhhhcCCee-eeHHH--------hhcccc------cccCCCCCCHHHHHHhCCCHHHC---C----CccCCCC
Confidence 9999999999999874 44443 445664 58999999999999999997554 4 8999999
Q ss_pred cccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceeeeeeccccccC
Q 009384 294 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP 373 (536)
Q Consensus 294 ~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~~~~~~~~~ 373 (536)
++|+ |++++|+++||++|+||++|+||++|+++|+ |+.++| ++++++|||+++..+++++..++
T Consensus 210 ~~G~-v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~~~~g--------------~~~~~~GTs~~~~~~~~~~~~~~ 273 (481)
T TIGR01312 210 KAGT-VRPEVAARLGLSAGVPVAAGGGDNAAGAIGT-GTVDPG--------------DAMMSLGTSGVVYAVTDKPLPDP 273 (481)
T ss_pred eeee-EcHHHHHHhCCCCCCeEEecchHHHHHhhCC-CcccCC--------------cEEEEecCceEEEEecCCcccCc
Confidence 9997 9999999999999999999999999999999 766677 89999999999988888776655
Q ss_pred CccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCCCCCCCCeE
Q 009384 374 GVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIH 453 (536)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~ 453 (536)
......+++..|+.|+.++++.++|.+++|+++.+.. ..|+.|++++++ +|+++++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~w~~~~~~~-------------~~~~~l~~~~~~---------~~~~~~~~~ 331 (481)
T TIGR01312 274 AGAVHGFCHALPGGWLPMGVTLSATSSLEWFRELFGK-------------EDVEALNELAEQ---------SPPGAEGVT 331 (481)
T ss_pred ccceeeeeeecCCceEEEeEehhhHHHHHHHHHHhCC-------------CcHHHHHHHHhc---------CCCCCCCeE
Confidence 3322223445678899999999999999999987631 136777777765 457889999
Q ss_pred EccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccccccccccc
Q 009384 454 VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKVREHIFHSVFYLSQSRTV 532 (536)
Q Consensus 454 flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~-g~~~~~I~~~GGgs~s~~~~~ 532 (536)
|+|||.|+|+|+||++++|+|+|++.+|++.|+ +||++||+||.+|++++.|++. |.++++|+++||+ +||+-|
T Consensus 332 ~~p~~~G~r~P~~~~~~~g~~~gl~~~~~~~~l---~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~--s~s~~~ 406 (481)
T TIGR01312 332 FLPYLNGERTPHLDPQARGSFIGLTHNTTRADL---TRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGG--AKSPAW 406 (481)
T ss_pred EecccccCCCCCCCCCcceEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccc--cCCHHH
Confidence 999999999999999999999999999999885 6699999999999999999985 6788999999997 688877
Q ss_pred ccC
Q 009384 533 RSF 535 (536)
Q Consensus 533 ~~~ 535 (536)
+|.
T Consensus 407 ~Q~ 409 (481)
T TIGR01312 407 RQM 409 (481)
T ss_pred HHH
Confidence 764
No 15
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=2e-68 Score=577.99 Aligned_cols=401 Identities=21% Similarity=0.340 Sum_probs=340.9
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT- 132 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~- 132 (536)
+|+||||+|||++|++|+|.+|++++..+.+++... .+||+|||+++||+.+++++++++++.++.+++|.+||||+|
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~aIgis~~~ 80 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGIKPDDIAAIGITNQR 80 (493)
T ss_pred CeEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCChhheeEEEEecCc
Confidence 479999999999999999999999999999987654 899999999999999999999999988877788999999998
Q ss_pred CCeEEEcCC-CCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhh
Q 009384 133 CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM 209 (536)
Q Consensus 133 ~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~ 209 (536)
+++|+||++ |+|+ +|+|+|+|.|+.++++++++.. ++++++||.++++.++++||+|+++|+||+|++
T Consensus 81 ~~~v~~D~~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe~~~~ 151 (493)
T TIGR01311 81 ETTVVWDKATGKPL---------YNAIVWQDRRTASICEELKAEGYGEFIREKTGLPLDPYFSATKLRWLLDNVPGVREA 151 (493)
T ss_pred ceEEEEECCCCcCc---------ccceeecccchHHHHHHHHHhcchHHHHHHhCCcCCccchHHHHHHHHhcCHHHHHH
Confidence 999999976 9999 8999999999999999998764 679999999999999999999999999999997
Q ss_pred hce----eecchhHHHhhhhC--CcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccc
Q 009384 210 VFR----WMDLSDWLSYRATG--DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK 283 (536)
Q Consensus 210 ~~~----~l~~~dyl~~~LTG--~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~ 283 (536)
+++ |++++|||.|+||| +.. ++.|. |++|++ ||+++++|++++++.+||++.++ |
T Consensus 152 ~~~~~~~~~~~~dyl~~~LtG~~~~~-~d~s~--------As~t~l------~d~~~~~W~~~~l~~~gi~~~~l---P- 212 (493)
T TIGR01311 152 AERGELLFGTIDTWLIWNLTGGKVHV-TDVTN--------ASRTML------FNIHTLDWDDELLELFGIPREIL---P- 212 (493)
T ss_pred hhcCCeEEECHhHhhhhhccCCceEE-eccch--------hhhhhc------ccccccccCHHHHHHcCCCHHHC---C-
Confidence 764 88999999999999 654 45553 345554 58999999999999999997544 4
Q ss_pred cCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceee
Q 009384 284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM 363 (536)
Q Consensus 284 l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~ 363 (536)
+++++++++|+ |+++ |+.+|+||++|++|++|+++|+ |+.+|| ++++++||++++.
T Consensus 213 ---~l~~~g~~~G~-v~~~-----~l~~g~pV~~g~~D~~aa~~G~-g~~~~g--------------~~~~~~GTs~~~~ 268 (493)
T TIGR01311 213 ---EVRSSSEVYGY-TDPG-----LLGAEIPITGVLGDQQAALFGQ-ACFKPG--------------QAKNTYGTGCFLL 268 (493)
T ss_pred ---CccCCccceec-cccc-----ccCCCceEEEecccHHHHHhhC-cCCCCC--------------ceEEeecccceEe
Confidence 79999999997 9876 7779999999999999999999 777787 8999999998865
Q ss_pred eeec-cccccC-CccccccccccCC---eEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhh
Q 009384 364 AVSR-NKLFIP-GVWGPFWSAMVPK---FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIH 438 (536)
Q Consensus 364 ~~~~-~~~~~~-~~~~~~~~~~~~~---~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 438 (536)
+.+. .+..++ +....++ +..++ .|++++++.++|.+++|+++.++.. ..|+++++++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~g~~~~W~~~~~~~~------------~~~~~~~~~a~~--- 332 (493)
T TIGR01311 269 MNTGEKPVISKHGLLTTVA-YQLGGKKPVYALEGSVFVAGAAVQWLRDNLKLI------------KHAAESEALARS--- 332 (493)
T ss_pred eecCCccccCCCCceEEEE-EecCCCCceEEEEeehhhhHHHHHHHHHHhCCC------------CCHHHHHHHHhc---
Confidence 5443 344333 2222222 22333 4999999999999999999987521 124555555443
Q ss_pred hcCCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccE
Q 009384 439 ERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKVRE 517 (536)
Q Consensus 439 ~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~-~g~~~~~ 517 (536)
+ +++++++|+|||.|+|+|+||+++||+|+|++..|++.|+ +||++|||||.+|++++.|++ .|.++++
T Consensus 333 ------~-~g~~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~g~~~~~ 402 (493)
T TIGR01311 333 ------V-EDNGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAHI---ARAALEAIAFQTRDVLEAMEKDAGVEITK 402 (493)
T ss_pred ------C-CCCCCEEEeCcccCCCCCcCCCCCcEEEECcCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCce
Confidence 2 4788999999999999999999999999999999999885 679999999999999999987 4888899
Q ss_pred EEEecccccccccccccC
Q 009384 518 HIFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 518 I~~~GGgs~s~~~~~~~~ 535 (536)
|+++||+ +||+-|+|.
T Consensus 403 i~~~GGg--a~s~~w~Qi 418 (493)
T TIGR01311 403 LRVDGGM--TNNNLLMQF 418 (493)
T ss_pred EEEeccc--ccCHHHHHH
Confidence 9999997 688877764
No 16
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=100.00 E-value=7e-68 Score=569.54 Aligned_cols=400 Identities=19% Similarity=0.243 Sum_probs=336.6
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeeccc---ccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQI---WKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~---~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
++||||+|||++|++|+|.+|++++..+.+++. .+.+||+||||++||+++++++++++++ ..+.+|.+|+||+|
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~--~~~~~I~aI~~s~~ 79 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE--LTEKHIRGIAVTTF 79 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh--cChhceEEEEEecc
Confidence 689999999999999999999999999988763 2379999999999999999999999875 34567999999998
Q ss_pred -CCeEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhh
Q 009384 133 -CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM 209 (536)
Q Consensus 133 -~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~ 209 (536)
+++|++|++|+|+ +|+|+|+|.|+.++++++.+.. ++++++||..+.+.++++||+|+++|+||+|++
T Consensus 80 ~~~~v~~D~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~ 150 (465)
T TIGR02628 80 GVDGAPFDKQGNQL---------YPIISWKCPRTAPVMDNIERLLDAQRLYAINGIGAYSFNTLYKLVWLKEHHPQLFER 150 (465)
T ss_pred ccceEEECCCCCCc---------cccccccCcccHHHHHHHHHhhCHHHHHHHhCCCccccchHHHHHHHHHhChHHHHH
Confidence 9999999999999 8999999999999999998764 678999999999999999999999999999999
Q ss_pred hceeecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccccCcccc
Q 009384 210 VFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA 289 (536)
Q Consensus 210 ~~~~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l~~~i~ 289 (536)
+++|++++|||.|+|||+.. ++.|. ||+|++ ||+++++|++++|+.+||++.++ | +++
T Consensus 151 ~~~~l~~~dyl~~~LTG~~~-~d~s~--------As~t~l------~d~~~~~w~~ell~~~gi~~~~l---P----~l~ 208 (465)
T TIGR02628 151 MHKFVFISSMITHRLTGEFT-TDITM--------AGTSMM------TDLTQRNWSPQILQALGLSRRLF---P----PLV 208 (465)
T ss_pred HHHhhCcHHHHHHHHhCCcc-cchhh--------hhccee------eecCcCCCCHHHHHHcCCCHHHC---C----Ccc
Confidence 99999999999999999975 44443 344554 58899999999999999997554 4 799
Q ss_pred CCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceeeeeeccc
Q 009384 290 FPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNK 369 (536)
Q Consensus 290 ~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~~~~~ 369 (536)
++++++|+ |++++|+++||++|+||++|+||++|+++|+ |+ .+| ++++++|||+++...+++|
T Consensus 209 ~~~~~~G~-v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~-~~g--------------~~~~~~GTs~~~~~~~~~~ 271 (465)
T TIGR02628 209 EAGEQIGT-LQNSAAAMLGLPVGVPVISAGHDTQFALFGS-GA-EQN--------------QPVLSSGTWEILMARSQQV 271 (465)
T ss_pred cCCcccee-eCHHHHHHhCCCCCCCEEecCccHHHHHhcc-CC-CCC--------------cEEEeccchhhheeccCcC
Confidence 99999998 9999999999999999999999999999999 66 466 7999999999988888776
Q ss_pred cccCCcc-cccc--ccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCCC
Q 009384 370 LFIPGVW-GPFW--SAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA 446 (536)
Q Consensus 370 ~~~~~~~-~~~~--~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~ 446 (536)
..++... ..+. .+..++.|........+| +++|+++.+...+ . .+.+.|++|++.+++ +|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~-~~~W~~~~~~~~~-~------~~~~~~~~l~~~a~~---------~~ 334 (465)
T TIGR02628 272 DTSLLSQYAGSTCELDSQAGLYNPAMQWLASG-VLEWVRKLFFTAE-T------PSDHYYQMMIEEARL---------IA 334 (465)
T ss_pred CCCccccccccccccccCCceeeehhhhhhhh-HHHHHHHHhcchh-h------ccccHHHHHHHHHHh---------CC
Confidence 6554321 1111 123356676655555555 8999998774211 0 112347888887765 45
Q ss_pred CCCCCeE-EccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccc
Q 009384 447 ALTEDIH-VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKVREHIFHSVF 524 (536)
Q Consensus 447 ~g~~gl~-flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~-g~~~~~I~~~GGg 524 (536)
+++++++ |+|++. |.+||+|+|++.+|++.|+ +||++|||||.+|+++|.|++. +.++++|+++||+
T Consensus 335 ~g~~gl~~~~p~~~--------~~a~g~~~Gl~~~~~~~~l---~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGg 403 (465)
T TIGR02628 335 NGADGVVNFQCDLL--------SCGQGGIQGLTLNTTRGHI---YRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGG 403 (465)
T ss_pred CCCCcceeecccCC--------cccceeEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCc
Confidence 7888998 888753 5789999999999999985 6799999999999999999986 5688999999997
Q ss_pred ccccccccccC
Q 009384 525 YLSQSRTVRSF 535 (536)
Q Consensus 525 s~s~~~~~~~~ 535 (536)
+||+.|+|.
T Consensus 404 --a~s~~w~Qi 412 (465)
T TIGR02628 404 --SKNTLWNQI 412 (465)
T ss_pred --cCCHHHHHH
Confidence 788888875
No 17
>PLN02669 xylulokinase
Probab=100.00 E-value=1.6e-65 Score=559.19 Aligned_cols=416 Identities=16% Similarity=0.126 Sum_probs=347.4
Q ss_pred CCeEEEEEccccceeEEEEcCCCCEEEEEEeeccc----ccCCCccccCHH----------HHHHHHHHHHHHHHHHcCC
Q 009384 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQI----WKEGDCIEQSST----------DIWHAICAAVDSACSLANV 119 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~----~~~~g~~eqd~~----------~~~~~i~~~l~~~~~~~~~ 119 (536)
..|+||||+|||++|++|+|++|+++++++.+++. +..+|++||||+ .||+++..+++++. +.+.
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~-~~~~ 85 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA-KEKF 85 (556)
T ss_pred CCeEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH-HcCC
Confidence 47899999999999999999999999999999863 236778999998 68899999999987 4566
Q ss_pred CCCCEEEEEEcCC-CCeEEEcC-CCCeeeecCC-CC---------CCcceeEEeccchHHHHHHHHcCc---hhHHhhhC
Q 009384 120 DGEEVKGVGFAAT-CSLVAVDA-DGSPVSVSWN-GD---------SRRNIIVWMDHRAVKQAEKINSRN---SPVLQYCG 184 (536)
Q Consensus 120 ~~~~I~aIgis~~-~~~v~vD~-~G~pl~~~~~-~~---------~~~p~i~W~D~Ra~~~~~~l~~~~---~~~~~~tG 184 (536)
+.++|.+|++|+| |++|+||+ .|+|+...=. +. +.+|+++|+|.|+.++++++++.. ++++++||
T Consensus 86 ~~~~I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg~~~l~~~tG 165 (556)
T PLN02669 86 PFHKVVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGGAAELSKLTG 165 (556)
T ss_pred ChhhEEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCcHHHHHHHHC
Confidence 6788999999998 99999998 4888621111 11 125899999999999999998763 57899999
Q ss_pred CCCCCCChHHHHHHHHHhCchhHhhhceeecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCC
Q 009384 185 GAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWD 264 (536)
Q Consensus 185 ~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~ 264 (536)
+++++.++++||+|+++|+||+|+++.+|+.++|||.|+|||+...+|.|.+ |+|+| ||+++++|+
T Consensus 166 ~~~~~~~t~~ki~wl~~~~Pe~y~~t~~i~~~~dyl~~~LtG~~~~~D~sda--------sg~~l------~Di~~~~Ws 231 (556)
T PLN02669 166 SRAYERFTGPQIRKIYETQPEVYHDTERISLVSSFMASLLVGDYASIDETDG--------AGMNL------MDIEKRCWS 231 (556)
T ss_pred CcccccccHHHHHHHHHhChHHHHHHHhhccHHHHHHHhhcCCCccccchhh--------hhhhh------hccccCCcC
Confidence 9999999999999999999999999999999999999999999643555543 34444 589999999
Q ss_pred HHHHHHcCCCCcccccccccCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhh
Q 009384 265 DEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENE 344 (536)
Q Consensus 265 ~~ll~~~Gi~~~~~~~~p~l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~ 344 (536)
+++|+.+++... .+|| +++++++++|+ |++++|+++||++||||++|++|++|+++|+ |+.+||
T Consensus 232 ~~ll~~~~~~l~-----~~Lp-~~~~~~~~~G~-v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~-g~~~~g-------- 295 (556)
T PLN02669 232 KAALEATAPGLE-----EKLG-KLAPAHAVAGK-IHPYFVQRFGFSSNCLVVQWSGDNPNSLAGL-TLSTPG-------- 295 (556)
T ss_pred HHHHHhhCccHH-----HHCc-CCCCCCcceee-eCHHHHHHhCCCCCCEEEEecchHHHHHhcc-CCCCCC--------
Confidence 999999964410 1334 78899999998 9999999999999999999999999999999 787787
Q ss_pred hhhccCeEEEEecccceeeeeeccccccCCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCC
Q 009384 345 EEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVS 424 (536)
Q Consensus 345 ~~~~~~~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~ 424 (536)
++.+++|||+++.++++++..++... .+++...++.|+.+++..+||.+++|+++.+.. .
T Consensus 296 ------~~~~slGTs~~~~~~~~~~~~~~~~~-~~~~~~~~~~y~~~~~~~ngg~~~~w~r~~~~~-------------~ 355 (556)
T PLN02669 296 ------DLAISLGTSDTVFGITREPQPSLEGH-VFPNPVDPESYMVMLCYKNGSLTREDIRNRCAD-------------G 355 (556)
T ss_pred ------eEEEEEcccceEEEecCCCCCCCCcc-eeeCccCCCCeEEEEEecchHHHHHHHHHHhcc-------------C
Confidence 89999999999988888766655322 233334488999999999999999999998731 2
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCCCCCCeEEccccCCCCCCC----CCCCCcEEEEcCCCC---------CChhHHHHHHH
Q 009384 425 LFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPI----ADPKSKGIICGMTLD---------SSEKQLALLYL 491 (536)
Q Consensus 425 ~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~----~d~~arg~f~Gl~~~---------~~~~~~~~~~r 491 (536)
.|+.|++++++ +|++++|++++||+.||+.|+ +++.++|.|.|++.. |++.|+ +|
T Consensus 356 ~~~~~~~~~~~---------~~~g~~g~l~~~~~~~e~~P~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~---~R 423 (556)
T PLN02669 356 SWDVFNKLLEQ---------TPPLNGGKLGFYYKEHEILPPLPVGFHRYILENFSGEALDGLVEEEVGEFDPPSE---VR 423 (556)
T ss_pred cHHHHHHHHHh---------CCCCCCCEEEeeccCcccCCCCCCccchhhhccccCcccccccccccccCCHHHH---HH
Confidence 46777877765 457889999899999999996 577788999999988 688884 67
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecccccccccccccC
Q 009384 492 ATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 492 AvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~~~~ 535 (536)
|++||++|.+|.+++.|+ .+.++++|+++||+ |+|+.|+|.
T Consensus 424 AvlEg~a~~~r~~~~~l~-~~~~~~~i~~~GGg--s~s~~w~Qi 464 (556)
T PLN02669 424 AIIEGQFLSMRAHAERFG-MPVPPKRIIATGGA--SANQSILKL 464 (556)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCCcEEEEEcCh--hcCHHHHHH
Confidence 999999999999999996 45678999999997 577777763
No 18
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=100.00 E-value=1.8e-60 Score=510.78 Aligned_cols=387 Identities=15% Similarity=0.125 Sum_probs=312.5
Q ss_pred EEEEccccceeEEEEcCC---CCEE-EEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 58 LGVDVGTGSARAGLFDES---GKLL-GSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 58 lgIDiGTtsiKa~l~d~~---g~i~-~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
||||+|||++|++|+|.+ |+++ .....+++... .+++.|||++.||+++.++++++.+. ..+|.+||||+|
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~----~~~i~~Igis~q 76 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE----GIAPDSIGIDTW 76 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc----CCCceEEEEecc
Confidence 589999999999999977 5676 55555555444 88999999999999999999998763 346999999998
Q ss_pred -CCeEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhh
Q 009384 133 -CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM 209 (536)
Q Consensus 133 -~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~ 209 (536)
+++|+||++|+|+ +|+|+|+|.|+.++++++++.. +++|++||+++.+.++++||+|+++|+|++|+|
T Consensus 77 ~~~~v~~D~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~ 147 (454)
T TIGR02627 77 GVDFVLLDQNGQRV---------GDPVSYRDSRTDGVMAQVQSELGKEAIYQRTGIQFLPFNTLYQLRALTEQQPDLLEK 147 (454)
T ss_pred ceeEEEEcCCCCCc---------cCceecCCCCCHHHHHHHHhhcCHHHHHHHhCCCcCCccHHHHHHHHHHhChhHHHH
Confidence 9999999999999 9999999999999999998764 689999999999999999999999999999999
Q ss_pred hceeecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccccCcccc
Q 009384 210 VFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA 289 (536)
Q Consensus 210 ~~~~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l~~~i~ 289 (536)
+++|++++|||.|+|||+.. ++.|. ||+|++ ||+++++|++++++.+||++.++ | +++
T Consensus 148 ~~~~l~~~dyl~~~LTG~~~-~d~s~--------As~t~l------~d~~~~~W~~~ll~~~gi~~~~l---P----~l~ 205 (454)
T TIGR02627 148 VAHFLLIPDYLNYRLTGKKV-WEYTN--------ATTTQL------VNINTDDWDEDLLAYLGVPAAWF---G----RPT 205 (454)
T ss_pred HHHhCCHHHHHHHheeCCce-eeeeh--------hhhccc------ccCCCCCcCHHHHHHcCCCHHHc---C----Ccc
Confidence 99999999999999999975 44443 445654 58999999999999999997544 4 799
Q ss_pred CCCCcccCCccHHHHHHcCCCCCCcEEe-ccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceeeeeecc
Q 009384 290 FPGHPLGSGLTPAAAKELGLVPGTPVGT-SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRN 368 (536)
Q Consensus 290 ~~g~~~G~~v~~~~a~~~GL~~g~pV~~-g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~~~~ 368 (536)
++++++|. +.+ .|+ +++||++ |+||++|+++|+ |+.+|| ++++++|||.++...+++
T Consensus 206 ~~~~~~G~-~~~-----~gl-~g~pVv~~g~~D~~aa~~g~-g~~~~g--------------~~~~s~GTs~~~~~~~~~ 263 (454)
T TIGR02627 206 HPGNVIGL-WEC-----PQG-NQIPVVAVATHDTASAVVAA-PLQGEN--------------AAYLSSGTWSLMGFESQT 263 (454)
T ss_pred CCCCeeEE-eec-----ccC-CCCCEEEECCchHHHHHhcC-CCCCCC--------------cEEEEEcHHHHhcccCCC
Confidence 99999997 753 477 7999998 889999999999 777777 899999999988777777
Q ss_pred ccccCCcccc-c-cccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCCC
Q 009384 369 KLFIPGVWGP-F-WSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA 446 (536)
Q Consensus 369 ~~~~~~~~~~-~-~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~ 446 (536)
|..++..+.. + .....++.|...+... ++ |+++.+... . +.+.|+.+.+.++. +|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~----W~~~~~~~~--~-------~~~~~~~l~~~a~~---------~p 320 (454)
T TIGR02627 264 PITNEQALAANITNEGGADGRYRVLKNIM-GL----WLLQRVCRE--R-------DINDLPALIEQAQA---------LP 320 (454)
T ss_pred CCCCHHHHHhccccccccccEEEeecchh-hh----HHHHHHHhh--h-------ccccHHHHHHHhcC---------CC
Confidence 6655432211 1 1123356676655443 33 777765321 0 12346666665543 22
Q ss_pred CCCCCeEEccccCCCCCCCCCCC-CcEE------EEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEE
Q 009384 447 ALTEDIHVLPDFHGNRSPIADPK-SKGI------ICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKVREH 518 (536)
Q Consensus 447 ~g~~gl~flP~l~Ger~P~~d~~-arg~------f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~-g~~~~~I 518 (536)
+ |.|++.|++.|+|||. +++. |+|++..|++.|+ +||++|||||.+|+++|.|++. +.++++|
T Consensus 321 ~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~~~~~l---~RAv~Egva~~~r~~~e~l~~~~~~~~~~i 391 (454)
T TIGR02627 321 A------FKSIINPNDDRFINPENMCEEIQAYCRETNQPIPESDAEL---ARCIFDSLALLYRQVLLELAELRGKPISQL 391 (454)
T ss_pred C------CCeeeCCCcccccChhhhHHHHHHHHHHcCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhCCCcCEE
Confidence 3 3466788999999995 5444 5999999999995 6799999999999999999985 7788999
Q ss_pred EEecccccccccccccC
Q 009384 519 IFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 519 ~~~GGgs~s~~~~~~~~ 535 (536)
+++||+ ++|+-|+|.
T Consensus 392 ~~~GGg--a~s~~w~Qi 406 (454)
T TIGR02627 392 HIVGGG--SQNAFLNQL 406 (454)
T ss_pred EEECCh--hhhHHHHHH
Confidence 999997 688878774
No 19
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=100.00 E-value=3.4e-55 Score=470.85 Aligned_cols=375 Identities=14% Similarity=0.122 Sum_probs=301.0
Q ss_pred EEEcCCCC-EEEEEEeeccccc--CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-CCeEEEcCCCCee
Q 009384 70 GLFDESGK-LLGSASSPIQIWK--EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-CSLVAVDADGSPV 145 (536)
Q Consensus 70 ~l~d~~g~-i~~~~~~~~~~~~--~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~-~~~v~vD~~G~pl 145 (536)
+-+|.+|+ +.-...++++..+ .+++.+|||+.||+++.++++++... ..+|.+||||+| +++|+||++|+|+
T Consensus 3 ~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~d~~~~~~~i~~~l~~~~~~----~~~I~~Igis~q~~~~v~lD~~G~pL 78 (471)
T PRK10640 3 ARYERECRSLTLREIHRFNNGLHSQDGFDTWDVDSLESAIRLGLNKVCEE----GIRIDSIGIDTWGVDYVLLDKQGQRV 78 (471)
T ss_pred eEEcCCCceEEEEEEEecCCCCeeeCCeeEECHHHHHHHHHHHHHHHhhc----CCCccEEEEcCCcccEEEECCCCCCc
Confidence 34555444 4344445555443 78999999999999999999888653 467999999998 9999999999999
Q ss_pred eecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhhhceeecchhHHHhh
Q 009384 146 SVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYR 223 (536)
Q Consensus 146 ~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~ 223 (536)
+|+|+|+|.|+.++++++.+.. +++|++||+++.+.++++||+|+++|+|++|+++++|++++|||.|+
T Consensus 79 ---------~pai~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~ 149 (471)
T PRK10640 79 ---------GLPVSYRDSRTDGVMAQAQQQLGKRDIYRRSGIQFLPFNTLYQLRALTEQQPELIAQVAHALLIPDYFSYR 149 (471)
T ss_pred ---------CCceeccCCCCHHHHHHHHHhcCHHHHHHHhCCCCCCccHHHHHHHHHHhChHHHHHhhHeecHHHHHHHH
Confidence 9999999999999999998764 67899999999999999999999999999999999999999999999
Q ss_pred hhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccccCccccCCCCcccCCccHHH
Q 009384 224 ATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAA 303 (536)
Q Consensus 224 LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l~~~i~~~g~~~G~~v~~~~ 303 (536)
|||+.. ++.|. ||+|++ ||+++++||+++++.+|||..++ | +++++++++|. ++++
T Consensus 150 LTG~~~-~d~s~--------as~t~l------~d~~~~~W~~ell~~~Gi~~~~L---P----~lv~~~~~~G~-v~~~- 205 (471)
T PRK10640 150 LTGKMN-WEYTN--------ATTTQL------VNINSDDWDESLLAWSGAPKAWF---G----RPTHPGNVIGH-WICP- 205 (471)
T ss_pred HhCCcc-eeecH--------hhhccc------cCCCcCCcCHHHHHHcCCCHHHc---C----CCcCCCcccee-eecc-
Confidence 999975 44443 445654 58999999999999999997544 4 79999999997 8765
Q ss_pred HHHcCCCCCCcEEe-ccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceeeeeeccccccCCc-cccccc
Q 009384 304 AKELGLVPGTPVGT-SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGV-WGPFWS 381 (536)
Q Consensus 304 a~~~GL~~g~pV~~-g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~~~~~~~~~~~-~~~~~~ 381 (536)
+| .++||++ |+||++|+++|+ |+.++| ++++++|||+++..++++|..++.. ...+..
T Consensus 206 ---~g--~g~pVv~~g~~D~~aa~~g~-g~~~~g--------------~~~~s~GT~~~~~~~~~~p~~~~~~~~~~~~~ 265 (471)
T PRK10640 206 ---QG--NEIPVVAVASHDTASAVIAS-PLNDSD--------------AAYLSSGTWSLMGFESQTPFTNDTALAANITN 265 (471)
T ss_pred ---cC--CCCCEEEeCCCcHHHHhhcc-CCCCCC--------------eEEEEeccHhhhheecCCCcCCHHHHHhccCc
Confidence 35 6899998 699999999999 777777 8999999999988888877655432 111111
Q ss_pred -cccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCCCCCCCCeEEccccCC
Q 009384 382 -AMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHG 460 (536)
Q Consensus 382 -~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~G 460 (536)
...++.|.++..+. | +|+++.+.... +...|+++.+++++ + +++++++ +| .|
T Consensus 266 ~~~~~g~~~~~~~~~--g---~W~~~~~~~~~---------~~~~~~~l~~~a~~---------~-~g~~gli-~p--~g 318 (471)
T PRK10640 266 EGGAEGRYRVLKNIM--G---LWLLQRVLQER---------QITDLPALIAATAA---------L-PACRFLI-NP--ND 318 (471)
T ss_pred cCCCCceEEEecchh--H---HHHHHHHHHHh---------ccCCHHHHHHHHHh---------C-CCCCcee-CC--Cc
Confidence 23467776665433 3 89999874311 22347777665554 2 3778886 68 69
Q ss_pred CCCCCCCC-CCcEEEEcCCCCC------ChhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccccccccccc
Q 009384 461 NRSPIADP-KSKGIICGMTLDS------SEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKVREHIFHSVFYLSQSRTV 532 (536)
Q Consensus 461 er~P~~d~-~arg~f~Gl~~~~------~~~~~~~~~rAvlEgia~~~r~~le~l~~~-g~~~~~I~~~GGgs~s~~~~~ 532 (536)
+|. +|| ++||+|+|++..| ++.|+ +|||+||+||.+|++++.|++. +.++++|+++||+ +||+-|
T Consensus 319 er~--~~~~~arg~~~gl~~~~G~~~~~~~~~l---~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGg--a~s~~w 391 (471)
T PRK10640 319 DRF--INPPSMCSEIQAACRETAQPVPESDAEL---ARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGG--CQNALL 391 (471)
T ss_pred ccc--cCchhhHHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECCh--hhhHHH
Confidence 994 675 8999998887776 88885 6799999999999999999984 7778999999997 888888
Q ss_pred ccC
Q 009384 533 RSF 535 (536)
Q Consensus 533 ~~~ 535 (536)
+|.
T Consensus 392 ~Qi 394 (471)
T PRK10640 392 NQL 394 (471)
T ss_pred HHH
Confidence 774
No 20
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-52 Score=436.99 Aligned_cols=408 Identities=32% Similarity=0.483 Sum_probs=317.9
Q ss_pred CCeEEEEEccccceeEEEEc-CCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCC---CCCEEEEE
Q 009384 54 RSVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVD---GEEVKGVG 128 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d-~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~---~~~I~aIg 128 (536)
+++++|||+||||+|++||| .+|+++..+..+++... ++||+||||.++|++++++|+.+.++.+.. ...|.+|+
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~ig 84 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIG 84 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEE
Confidence 58999999999999999999 78999999988887655 899999999999999999999888876543 34577799
Q ss_pred EcCC-CCeEEEcCC-CCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc-hhH---HhhhCCCCCCCChHHHHHHHHHh
Q 009384 129 FAAT-CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN-SPV---LQYCGGAVSPEMQPPKLLWVKEN 202 (536)
Q Consensus 129 is~~-~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~-~~~---~~~tG~~~~~~~~~~kl~wl~~~ 202 (536)
++.| ++.|+|++. |+|+ .++|.|+|.|+..++++++... ... -.++|.+++++|.++||+||++|
T Consensus 85 v~~qr~~~v~w~~~tg~p~---------~niI~W~D~Ra~~~~~~ln~~~~~~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn 155 (516)
T KOG2517|consen 85 VVNQREGSVLWNKRTGEPL---------TNIIVWMDHRAVSEVEELNSSTPSNLFLPRPYCGLPVSPEFSAPKLRWLLDN 155 (516)
T ss_pred EEecCCceEEeecCCCCcc---------cceEEeeccccHHHHHHHHhcCCchhcccccccCCccccccchheehHHhhh
Confidence 9998 999999987 9999 8999999999999999999875 222 26799999999999999999999
Q ss_pred Cchh-HhhhceeecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccc
Q 009384 203 LQES-WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHH 281 (536)
Q Consensus 203 ~Pe~-~~~~~~~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~ 281 (536)
.|++ +...+..+...+|+.|++++-...+.+ ......++++|++| |..++.|+..+++.+|||.+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~twl~~~~t~~~~~---~~~d~~Nas~t~~f------~~~~~~wd~~~~~f~~lp~~ll--- 223 (516)
T KOG2517|consen 156 VPEVLKAKEEGGFDLGTFDTWLATGLTGRSSC---HCTDVTNASRTGLF------NTESGLWDLKLLDFFGLPLNLL--- 223 (516)
T ss_pred CHHHHHHHHhcccchhhhhhheeecCCcccee---cccccccccccccc------chhhhhhhhhhhhhhCCCcccC---
Confidence 9998 667777777777777776654321111 00112246677765 7889999999999999999776
Q ss_pred cccCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccce
Q 009384 282 AKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTC 361 (536)
Q Consensus 282 p~l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~ 361 (536)
| ++..+++++|. +. +..+|+.+|+||.++.+|++|+++|.+ +.++| ++..+.||++.
T Consensus 224 p----~i~s~~e~~g~-~~---~~~~~~~~g~~vs~~lgDq~Aa~vg~~-~~~~g--------------~~~~t~~t~~F 280 (516)
T KOG2517|consen 224 P----DIRSSSEVYGT-TA---AGDLGLLEGTPVSSCLGDQQASMVGQM-CYKPG--------------CAKLTYGTGCF 280 (516)
T ss_pred C----ccccccccccc-cc---ccccccccCcceeechhhHHHHHHhHh-hhcCc--------------ceEEeeCCceE
Confidence 5 78899999986 33 356779999999999999999999984 45577 45556666665
Q ss_pred eeeeecccc--ccCCccccccc-cccCC--eEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhh
Q 009384 362 HMAVSRNKL--FIPGVWGPFWS-AMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESM 436 (536)
Q Consensus 362 ~~~~~~~~~--~~~~~~~~~~~-~~~~~--~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 436 (536)
+..++.... ..++.+..... ..... .|+.++....+|..++|+++.+...+. ...+++.+.+.
T Consensus 281 l~~~~G~~~~~s~~g~~~~~g~q~g~g~~~~~~leg~~a~~~~~v~w~~d~~~i~~~------------~~~i~~~~~~~ 348 (516)
T KOG2517|consen 281 LLGVWGPYFDASQPGLLTTVGGQSGTGKLLDHALEGHAAFAGALVQWLRDNLGIIEE------------LNEIEKLAAEV 348 (516)
T ss_pred EeeccCCccccccCccceecccccccccHHHHHHhcccchHHHHHHHHHHhhhHHHH------------HHHHHHHHHhh
Confidence 554443211 11222211000 00111 377888888899999999988643211 12233444331
Q ss_pred hhhcCCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCc
Q 009384 437 IHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHG-HKV 515 (536)
Q Consensus 437 ~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g-~~~ 515 (536)
..+.+++|+|.|.|.|+|+|||++||+|+|++.+++.+|+++ |++|+|||.+|++++.|++.+ .++
T Consensus 349 ----------~~t~d~~f~P~f~G~~sP~~d~~arg~i~Gls~~ts~~hia~---A~leai~fqtr~Il~am~~~~~~~i 415 (516)
T KOG2517|consen 349 ----------NLTSDVHFVPDFHGLRSPYADPTARGVIIGLSQDTSKEHLAR---AALEAIAFQTREILEAMERDGGHPI 415 (516)
T ss_pred ----------cccCceEEEccccCCCCCCCCcccceeEEEecCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 257899999999999999999999999999999999999765 999999999999999999865 799
Q ss_pred cEEEEeccccccccccc
Q 009384 516 REHIFHSVFYLSQSRTV 532 (536)
Q Consensus 516 ~~I~~~GGgs~s~~~~~ 532 (536)
++++++||. |+++-+
T Consensus 416 ~~L~~~GG~--s~N~ll 430 (516)
T KOG2517|consen 416 STLRVCGGL--SKNPLL 430 (516)
T ss_pred ceeeecccc--ccCHHH
Confidence 999999998 444433
No 21
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=100.00 E-value=1.1e-49 Score=393.62 Aligned_cols=241 Identities=38% Similarity=0.666 Sum_probs=215.4
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-C
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C 133 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~-~ 133 (536)
|+||||+|||++|++|+|++|++++..+++++... .+|+.|||+++||+.+++++++++++.+.+..+|.+|+||+| +
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~aI~is~~~~ 80 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQIKAIGISGQGH 80 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGEEEEEEEE-SS
T ss_pred CEEEEEEcccceEEEEEeCCCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCcccceeEEEEeccccC
Confidence 78999999999999999999999999999998766 789999999999999999999999998777899999999998 9
Q ss_pred CeEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhhhc
Q 009384 134 SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF 211 (536)
Q Consensus 134 ~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~ 211 (536)
++|+||++|+|+ +|+|+|+|+|+.++++++++.. +++++.||.++++.++++||+||++|+|++|++++
T Consensus 81 ~~v~~D~~~~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~ 151 (245)
T PF00370_consen 81 GLVLLDKDGKPL---------RPAILWMDTRAAEEAEELNEEGSPEEIYEKTGLPLSPGYPLAKLLWLKENEPEIFEKAA 151 (245)
T ss_dssp EEEEEETTSSBS---------SCEE-TT-CTTHHHHHHHHHHTHHHHHHHHHSS-SSTTSHHHHHHHHHHHSHHHHHHHH
T ss_pred Ccceeccccccc---------cccccccccchhhHHHHHHhhcCcceeeeeccccccccchHHHHHHHHHhCchhhhhhh
Confidence 999999999999 8999999999999999998864 78999999999999999999999999999999999
Q ss_pred eeecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccccCccccCC
Q 009384 212 RWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 291 (536)
Q Consensus 212 ~~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l~~~i~~~ 291 (536)
+|++++|||.|+|||+.. ++.|. |++|++ ||+++++|++++++.+||++.++ | +++++
T Consensus 152 ~~~~~~dyl~~~LtG~~~-~d~s~--------as~tgl------~d~~~~~w~~~~l~~~gi~~~~l---P----~i~~~ 209 (245)
T PF00370_consen 152 KFLTLSDYLAYKLTGRAA-TDYSN--------ASRTGL------YDIRTGQWDEELLEALGIPEELL---P----EIVPP 209 (245)
T ss_dssp EEEEHHHHHHHHHHSC-E-EEHHH--------HCTSSS------EETTTTEE-HHHHHHTTSGGGGS---C----EEE-T
T ss_pred hcccHHHHHHhhcccccc-ccccc--------hhcccc------ccccccccCHHHHHhhCCChhhC---C----cEecC
Confidence 999999999999999875 34443 344554 58899999999999999998654 4 89999
Q ss_pred CCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhc
Q 009384 292 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVG 328 (536)
Q Consensus 292 g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg 328 (536)
|+++|+ +++++|+++||++|+||++|+||++||++|
T Consensus 210 g~~~G~-~~~~~a~~~Gl~~~~pV~~g~~D~~aa~lG 245 (245)
T PF00370_consen 210 GEIIGT-LTPEAAKELGLPEGTPVIAGGGDQAAAALG 245 (245)
T ss_dssp TSEEEE-EEHHHHHHHTSTTTEEEEEEEEHHHHHHHH
T ss_pred CCeeEE-ECHHHHHHhCCCCCCEEEEEchHHHHhhcC
Confidence 999998 999999999999999999999999999986
No 22
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-36 Score=303.65 Aligned_cols=409 Identities=15% Similarity=0.131 Sum_probs=311.0
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecc----ccc-C-----CC--ccccCHHHHHHHHHHHHHHHHHHcCCCCC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQ----IWK-E-----GD--CIEQSSTDIWHAICAAVDSACSLANVDGE 122 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~----~~~-~-----~g--~~eqd~~~~~~~i~~~l~~~~~~~~~~~~ 122 (536)
..+||+|++|+.+|++++|++.++++++.+.+. .+. . +| ..-..|..+|-...+.+-+.+.+++.+..
T Consensus 9 ~~fLG~DlSTQqlKaviids~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDlll~kl~~~~~d~~ 88 (545)
T KOG2531|consen 9 RSFLGFDLSTQQLKAVIIDSNLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLLLDKLREAGFDLS 88 (545)
T ss_pred ceeeeeecccceeEEEEEcCCccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHHHHHHHHcCCCHH
Confidence 469999999999999999999999999987763 332 1 22 33445775565566777777777888888
Q ss_pred CEEEEEEcCC-CCeEEEcCCCCeeeecCCC-----------CCCcceeEEeccchHHHHHHHHcCc---hhHHhhhCCCC
Q 009384 123 EVKGVGFAAT-CSLVAVDADGSPVSVSWNG-----------DSRRNIIVWMDHRAVKQAEKINSRN---SPVLQYCGGAV 187 (536)
Q Consensus 123 ~I~aIgis~~-~~~v~vD~~G~pl~~~~~~-----------~~~~p~i~W~D~Ra~~~~~~l~~~~---~~~~~~tG~~~ 187 (536)
+|.||+-++| ||.|.|.+.++-....|+. ........|+|..+..+++++.... .++.+.||...
T Consensus 89 kV~aiSGagQQHGsVyWs~ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG~~~la~LTGSRA 168 (545)
T KOG2531|consen 89 KVMAISGAGQQHGSVYWSKGAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGGAQELAKLTGSRA 168 (545)
T ss_pred HhhhhcccccccceeeehhhhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhccHHHHHHhhcchh
Confidence 9999999997 9999998876554444441 1345566799999999999998874 78899999999
Q ss_pred CCCChHHHHHHHHHhCchhHhhhceeecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHH
Q 009384 188 SPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEF 267 (536)
Q Consensus 188 ~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~l 267 (536)
+-.|+.+|++-+.+.+||.|+++.+|-.+++|++..|-|..+..|.|.++. || ++|++++.||.++
T Consensus 169 y~RFTGpQIrKi~~~~pe~Ye~TerISLVSsFlaSlllG~~a~id~sDgsG-----------MN---L~dIr~k~ws~~~ 234 (545)
T KOG2531|consen 169 YERFTGPQIRKIYQQEPEAYEKTERISLVSSFLASLLLGSYAPIDESDGSG-----------MN---LLDIRKKKWSKAL 234 (545)
T ss_pred hhhcccHHHHHHHHhChHhhhccceeehHHHHHHHHHhccccceecccccC-----------ch---HHHHhhhhhhHHH
Confidence 999999999999999999999999999999999999999987445554332 23 4699999999999
Q ss_pred HHHcCCCCcccccccccCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhh
Q 009384 268 WEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEA 347 (536)
Q Consensus 268 l~~~Gi~~~~~~~~p~l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~ 347 (536)
|++.. +.+. .+|. ..+++..+.|+ |++.+.+++|+++++.|+.-.||.+++..|. -+ +++
T Consensus 235 L~~~a--pdL~---~KL~-~pv~~~~~~G~-I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL-~l-~~~----------- 294 (545)
T KOG2531|consen 235 LDACA--PDLE---EKLG-KPVPPMSIAGT-ISKYFVKRYGFPPDCKVVPSTGDNPSSLAGL-PL-RPG----------- 294 (545)
T ss_pred HhhhC--hhHH---HHhC-CCCCccccccc-hhhhhHhhcCCCCCCEEEecCCCChHHhhCc-cc-cCC-----------
Confidence 99964 4444 4566 56777899998 9999999999999999999999999999987 44 465
Q ss_pred ccCeEEEEecccceeeeeeccccccCCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHH
Q 009384 348 ICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFE 427 (536)
Q Consensus 348 ~~~~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~ 427 (536)
++.+|+|||..+.+.++++.+.+... .|++.+.++.|+.+-+.-+|+.+=+-+++.. ...+|+
T Consensus 295 ---dl~iSLGTSdTv~m~t~~~~p~~egH-vf~hP~~~~~YM~mlCfkNgSL~RE~ir~~~-------------~~~sWd 357 (545)
T KOG2531|consen 295 ---DLLISLGTSDTVFMVTKEYHPSPEGH-VFCHPTDPNHYMGMLCFKNGSLTRERIRNES-------------ANGSWD 357 (545)
T ss_pred ---ceEEEecCcceEEEEcCCCCCCCCcc-eeccCCCccceEEEEEecCChHHHHHHhhcc-------------cCCCHH
Confidence 89999999999999999987766443 3566677889999999989877655555432 124688
Q ss_pred HHHHHHHhhhhhcCCCCCCCCCCCeEEccccCCCCCCCCCCCCcEE----EE---------cCCCCCChhHHHHHHHHHH
Q 009384 428 LLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGI----IC---------GMTLDSSEKQLALLYLATV 494 (536)
Q Consensus 428 ~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~----f~---------Gl~~~~~~~~~~~~~rAvl 494 (536)
.+++.+.+ .|.|.++.+=+-|=-+|-.|- ...|. +- ++....+|+.- .||++
T Consensus 358 ~Fne~L~~---------t~~gn~g~~g~~f~~~EIvP~---~~~G~~R~~~~~~~~~~~~~~v~kf~~p~~e---~rAlv 422 (545)
T KOG2531|consen 358 KFNEILDS---------TPSGNNGNLGVYFPEREIVPS---VPKGTLRFIFENKELSAERIEVAKFSDPEIE---ARALV 422 (545)
T ss_pred HHHHHhcc---------CcCCCCCceeEecccccccCC---CCccceEEEecCCccchhhcccccCCCchHH---HHHHH
Confidence 88886655 346766653221113566661 12221 11 22233334443 56999
Q ss_pred HHHHHHHHHHHHHHHhCCCCccEEEEecccccccc
Q 009384 495 QGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQS 529 (536)
Q Consensus 495 Egia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~ 529 (536)
||.++..|...+.|.-.-.++++|+++||.|..++
T Consensus 423 EgQ~L~~r~~~~~lg~~~~~~~rilvtGGAS~N~~ 457 (545)
T KOG2531|consen 423 EGQFLSKRARAEPLGFKSNPPTRILVTGGASRNEA 457 (545)
T ss_pred HHhHhHhhhhhccccCCCCCCceEEEecCccccHH
Confidence 99999999888887643336789999999855543
No 23
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=99.87 E-value=2e-22 Score=192.40 Aligned_cols=166 Identities=27% Similarity=0.420 Sum_probs=127.9
Q ss_pred EEEEecccceeeeeecccccc-CCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHH
Q 009384 352 MVLVCGTSTCHMAVSRNKLFI-PGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 430 (536)
Q Consensus 352 ~~~s~GTs~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~ 430 (536)
+++++|||+++.+++++|..+ ++.+.++..+..++.|+++++.+++|.+++|+++.+...+++.+ . ...++.+.
T Consensus 1 a~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~----~-~~~~~~~~ 75 (198)
T PF02782_consen 1 AVVSLGTSGFIMVVSSEPVISPPGFWNPFADHVIPGRYLLEGASSSGGNALEWLRQQLGFRESLSD----E-EEIYEDLA 75 (198)
T ss_dssp EEEEESSSEEEEEEETSTTTTSSSSEEEEEEETSEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSS----T-THHHHHHH
T ss_pred CEEEehhhhHHhhEeCccccCCCeeEEeecCcCCCCeEEEeeccccccchhHHHHHhhccchhhhh----h-hhccchHH
Confidence 468999999999999888743 35555554344678899999999999999999999632111100 0 01122222
Q ss_pred HHHHhhhhhcCCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009384 431 GTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 510 (536)
Q Consensus 431 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~ 510 (536)
...+.. .++++.+++|+|+|.|+|+|+||++++|.|+|++.+|++.|+ +||++||++|.+|++++.|++
T Consensus 76 ~~~~~~--------~~~~~~~~~~~p~~~G~~~p~~~~~~~g~~~gl~~~~~~~~~---~rAv~Egia~~~~~~~~~l~~ 144 (198)
T PF02782_consen 76 ELEAAA--------SPPGSGGVFFLPFLSGERSPYWDPDARGSFIGLSSDTTRADL---ARAVLEGIAFSLRQILEELEE 144 (198)
T ss_dssp HHHHHH--------TSSTCTTSEEEECTTGBCTTTBBTTHCEEEEEEETTTSHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhh--------ccCcccceeeeeccccCcccccccccccccccCCcccCHHHH---HHHHHHhHHHHHHHhhhhccc
Confidence 111111 235789999999999999999999999999999999998885 679999999999999999998
Q ss_pred C-CCCccEEEEecccccccccccccC
Q 009384 511 H-GHKVREHIFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 511 ~-g~~~~~I~~~GGgs~s~~~~~~~~ 535 (536)
. +.++++|+++||++ +|+-|+|.
T Consensus 145 ~~~~~~~~i~~~GG~~--~n~~~~q~ 168 (198)
T PF02782_consen 145 LTGIPIRRIRVSGGGA--KNPLWMQI 168 (198)
T ss_dssp HHTSCESEEEEESGGG--GSHHHHHH
T ss_pred cccccceeeEeccccc--cChHHHHH
Confidence 6 99999999999985 77777653
No 24
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.59 E-value=8.5e-08 Score=94.95 Aligned_cols=68 Identities=21% Similarity=0.274 Sum_probs=58.6
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-CC
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-CS 134 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~-~~ 134 (536)
|++|||+|||++|++++| +|++++..+. |++.||+.+.+++++++++.+.+..+|.+|++|++ ++
T Consensus 1 ~~lGIDiGtts~K~vl~d-~g~il~~~~~-------------~~~~~~~~~~~~l~~~~~~~~~~~~~i~~i~~Tg~~~~ 66 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME-DGKVIGYKWL-------------DTTPVIEETARAILEALKEAGIGLEPIDKIVATGYGRH 66 (248)
T ss_pred CEEEEEcChhheEEEEEc-CCEEEEEEEe-------------cCCCCHHHHHHHHHHHHHHcCCChhheeEEEEECCCcc
Confidence 579999999999999999 8999887655 45568889999999999888777789999999998 77
Q ss_pred eEE
Q 009384 135 LVA 137 (536)
Q Consensus 135 ~v~ 137 (536)
+|+
T Consensus 67 ~v~ 69 (248)
T TIGR00241 67 KVG 69 (248)
T ss_pred ccc
Confidence 765
No 25
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=97.86 E-value=9.3e-05 Score=75.82 Aligned_cols=69 Identities=25% Similarity=0.367 Sum_probs=55.7
Q ss_pred CCeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 009384 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis 130 (536)
..+++|||||.|++|++++|.+|+++...+.+++. ..+.+.+.+.+.+.+++++++.+ ...++.+||++
T Consensus 5 ~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~-------~~~~~~~~~~i~~~i~~~~~~~~-~~~~~iGIgi~ 73 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPT-------PDPEEAILEAILALVAELLKQAQ-GRVAIIGIGIP 73 (314)
T ss_pred CcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCC-------CCchhHHHHHHHHHHHHHHHhcC-CcCceEEEEec
Confidence 36899999999999999999999999998888872 22335788889999999888754 34567788874
No 26
>PRK09698 D-allose kinase; Provisional
Probab=97.58 E-value=0.00061 Score=69.36 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=56.9
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (536)
.+++|||+|.|++|++++|.+|+++.+...+++. ..+++. .+.+.+.+++++++.+ .++.+||| +.++
T Consensus 4 ~~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~~-------~~~~~~-~~~l~~~i~~~~~~~~---~~i~gigi-a~pG 71 (302)
T PRK09698 4 NVVLGIDMGGTHIRFCLVDAEGEILHCEKKRTAE-------VIAPDL-VSGLGEMIDEYLRRFN---ARCHGIVM-GFPA 71 (302)
T ss_pred cEEEEEEcCCcEEEEEEEcCCCCEEEEEEeCCcc-------ccchHH-HHHHHHHHHHHHHHcC---CCeeEEEE-eCCc
Confidence 6899999999999999999999999877766541 113344 7777888888887643 57999999 4444
Q ss_pred eEEEcCC-CCee
Q 009384 135 LVAVDAD-GSPV 145 (536)
Q Consensus 135 ~v~vD~~-G~pl 145 (536)
++|.+ |..+
T Consensus 72 --~vd~~~g~i~ 81 (302)
T PRK09698 72 --LVSKDRRTVI 81 (302)
T ss_pred --ceeCCCCEEE
Confidence 45765 4434
No 27
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=97.51 E-value=0.00043 Score=70.96 Aligned_cols=86 Identities=27% Similarity=0.444 Sum_probs=65.9
Q ss_pred EEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCCeEE
Q 009384 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVA 137 (536)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~~v~ 137 (536)
||||+|.|++|++++|.+|+++.....+.+ .+++++.+.+.+.+++++++.+....+|.+||| +.+| +
T Consensus 1 lgidig~t~~~~~l~d~~g~i~~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgv-a~pG--~ 68 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNILSKWKVPTD---------TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGI-GAPG--P 68 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCEEEEEEeCCC---------CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEE-eccc--c
Confidence 689999999999999999999987665542 267888999999999999887666678999999 4444 4
Q ss_pred EcCC-CCeeeecCCCCCCcceeEEecc
Q 009384 138 VDAD-GSPVSVSWNGDSRRNIIVWMDH 163 (536)
Q Consensus 138 vD~~-G~pl~~~~~~~~~~p~i~W~D~ 163 (536)
+|.+ |.... .|.+.|.+-
T Consensus 69 vd~~~g~~~~--------~~~~~w~~~ 87 (318)
T TIGR00744 69 VNRQRGTVYF--------AVNLDWKQE 87 (318)
T ss_pred ccCCCCEEEe--------cCCCCCCCC
Confidence 5754 65442 455568664
No 28
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.39 E-value=0.0012 Score=65.54 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=53.1
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCCe
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL 135 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~~ 135 (536)
+++|||+|.|++|++++|.+|+++.+.+.+++ ..+++++.+.+.+.+++..... ..+.+|||+ .++
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~----~~~~gIgv~-~pG- 66 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQRIWHKRVPTP--------REDYPQLLQILRDLTEEADTYC----GVQGSVGIG-IPG- 66 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCC--------CcCHHHHHHHHHHHHHHHHhhc----CCCceEEEE-ecC-
Confidence 46999999999999999999999987777654 2367778887777777664321 234577773 344
Q ss_pred EEEcCC-CCee
Q 009384 136 VAVDAD-GSPV 145 (536)
Q Consensus 136 v~vD~~-G~pl 145 (536)
++|.+ |...
T Consensus 67 -~vd~~~g~i~ 76 (256)
T PRK13311 67 -LPNADDGTVF 76 (256)
T ss_pred -cEECCCCEEE
Confidence 45765 5433
No 29
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.34 E-value=0.00079 Score=70.11 Aligned_cols=67 Identities=24% Similarity=0.398 Sum_probs=51.9
Q ss_pred CCCCeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 009384 52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (536)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~ 131 (536)
+++.+++|||+|+|++|++++| +++++.....++. ++ .+.+.+++++++++.+....+|..|++||
T Consensus 141 ~~~g~~lGIDiGSTttK~Vl~d-d~~Ii~~~~~~t~----------~~---~~~a~~~l~~~l~~~Gl~~~di~~i~~TG 206 (404)
T TIGR03286 141 RQEGLTLGIDSGSTTTKAVVME-DNEVIGTGWVPTT----------KV---IESAEEAVERALEEAGVSLEDVEAIGTTG 206 (404)
T ss_pred ccCCEEEEEEcChhheeeEEEc-CCeEEEEEEeecc----------cH---HHHHHHHHHHHHHHcCCCccceeEEEeee
Confidence 4556999999999999999998 5688876655431 22 34566778888888887778999999988
Q ss_pred C
Q 009384 132 T 132 (536)
Q Consensus 132 ~ 132 (536)
.
T Consensus 207 y 207 (404)
T TIGR03286 207 Y 207 (404)
T ss_pred e
Confidence 5
No 30
>PRK09557 fructokinase; Reviewed
Probab=97.34 E-value=0.00096 Score=67.94 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=55.3
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCCe
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL 135 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~~ 135 (536)
+.||||+|.|++|++++|.+|+++...+.+++ .++++++.+.+.+.++++..+. ..+.+||| +.++
T Consensus 1 ~~lgidig~t~~~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~----~~~~gIgi-~~pG- 66 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDAGEELFRKRLPTP--------RDDYQQTIEAIATLVDMAEQAT----GQRGTVGV-GIPG- 66 (301)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCC--------CCCHHHHHHHHHHHHHHHHhhc----CCceEEEe-cCcc-
Confidence 47999999999999999999999987766554 2367788888888888776542 34678888 3444
Q ss_pred EEEcCC-CCee
Q 009384 136 VAVDAD-GSPV 145 (536)
Q Consensus 136 v~vD~~-G~pl 145 (536)
++|++ |...
T Consensus 67 -~vd~~~g~i~ 76 (301)
T PRK09557 67 -SISPYTGLVK 76 (301)
T ss_pred -cCcCCCCeEE
Confidence 45754 6554
No 31
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=97.31 E-value=0.00096 Score=62.26 Aligned_cols=86 Identities=23% Similarity=0.376 Sum_probs=65.4
Q ss_pred EEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCCeEEE
Q 009384 59 GVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAV 138 (536)
Q Consensus 59 gIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~~v~v 138 (536)
|||+|.++++++++|.+|+++.+.+.+++ .+++++.+.+.+.++++..+.+. . +|||+ .++ ++
T Consensus 1 gidig~~~i~~~l~d~~g~ii~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~~----~-gIgi~-~pG--~v 63 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEIIYSESIPTP---------TSPEELLDALAELIERLLADYGR----S-GIGIS-VPG--IV 63 (179)
T ss_dssp EEEEESSEEEEEEEETTSCEEEEEEEEHH---------SSHHHHHHHHHHHHHHHHHHHTC----E-EEEEE-ESS--EE
T ss_pred CEEECCCEEEEEEECCCCCEEEEEEEECC---------CCHHHHHHHHHHHHHHHHhhccc----c-cEEEe-ccc--cC
Confidence 79999999999999999999998888775 37899999999999999887542 2 77774 344 56
Q ss_pred cCC-CCeeeecCCCCCCcceeEEeccchHHHH
Q 009384 139 DAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQA 169 (536)
Q Consensus 139 D~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~ 169 (536)
|.+ |..+. .|...|.+-.-.+..
T Consensus 64 ~~~~g~i~~--------~~~~~~~~~~l~~~l 87 (179)
T PF00480_consen 64 DSEKGRIIS--------SPNPGWENIPLKEEL 87 (179)
T ss_dssp ETTTTEEEE--------CSSGTGTTCEHHHHH
T ss_pred cCCCCeEEe--------cCCCCcccCCHHHHh
Confidence 666 45553 566777775544433
No 32
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.27 E-value=0.00089 Score=67.10 Aligned_cols=65 Identities=23% Similarity=0.225 Sum_probs=46.9
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
.+++|||+|+|++|++|+|. ++++.....++. .++. +.+.+++++++++.+....+|..++.|+.
T Consensus 32 m~~~GIDiGStt~K~Vlld~-~~i~~~~~~~tg---------~~~~---~~a~~~l~~~l~~~g~~~~~v~~~~~TGy 96 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVCD-GELYGYNSMRTG---------NNSP---DSAKNALQGIMDKIGMKLEDINYVVGTGY 96 (293)
T ss_pred cEEEEEEeCchhEEEEEEeC-CEEEEEEeecCC---------CCHH---HHHHHHHHHHHHHcCCcccceEEEEEECc
Confidence 47999999999999999994 566655444332 1233 24566788888887766678998888764
No 33
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=97.21 E-value=0.00043 Score=57.95 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=26.1
Q ss_pred EEEEEccccceeEEEEcCCCCEEEEEEeec
Q 009384 57 FLGVDVGTGSARAGLFDESGKLLGSASSPI 86 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~ 86 (536)
+||||+|.|.+|++++|.+|+++.....+.
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~ 32 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIP 32 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEE
Confidence 799999999999999999999887655543
No 34
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.18 E-value=0.0026 Score=64.81 Aligned_cols=75 Identities=21% Similarity=0.324 Sum_probs=53.9
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCCe
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL 135 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~~ 135 (536)
+++|||+|.|++|++++|.+|+++.+.+.+++ ..+++++.+.+.+.++++..+. ..+.+|||+ .++
T Consensus 1 ~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~----~~~~~igia-~pG- 66 (303)
T PRK13310 1 MYYGFDIGGTKIELGVFNEKLELQWEERVPTP--------RDSYDAFLDAVCELVAEADQRF----GCKGSVGIG-IPG- 66 (303)
T ss_pred CeEEEEeCCCcEEEEEECCCCcEEEEEEecCC--------CcCHHHHHHHHHHHHHHHHhhc----CCcceEEEe-CCC-
Confidence 36999999999999999999999987766554 1357888888888888775532 234467773 344
Q ss_pred EEEcCC-CCee
Q 009384 136 VAVDAD-GSPV 145 (536)
Q Consensus 136 v~vD~~-G~pl 145 (536)
++|.+ |...
T Consensus 67 -~vd~~~g~~~ 76 (303)
T PRK13310 67 -MPETEDGTLY 76 (303)
T ss_pred -cccCCCCEEe
Confidence 45654 5543
No 35
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.0021 Score=64.15 Aligned_cols=70 Identities=29% Similarity=0.322 Sum_probs=55.5
Q ss_pred CCeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCH-HHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 009384 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSS-TDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~-~~~~~~i~~~l~~~~~~~~~~~~~I~aIgi 129 (536)
++|+||||-|+|+++++|.|.+|+++......-..+ .-++ +.-+..+.+++.+++.+++.++++|..+.+
T Consensus 4 ~~~~lGVDGGGTkt~a~l~~~~g~vlg~g~sGpAN~------~~~~~e~A~~ni~~ai~~A~~~aG~~~~~i~~~~a 74 (301)
T COG2971 4 MPYFLGVDGGGTKTRAVLADEDGNVLGRGKSGPANI------QLVGKEEAVRNIKDAIREALDEAGLKPDEIAAIVA 74 (301)
T ss_pred ccEEEEEccCCcceEEEEEcCCCcEEEEeccCCcee------cccchHHHHHHHHHHHHHHHHhcCCCHHHhCceee
Confidence 479999999999999999999999998775432222 1234 888999999999999988887777665444
No 36
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.98 E-value=0.0028 Score=62.65 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=46.2
Q ss_pred eEEEEEccccceeEEEEcCCCC-EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 56 VFLGVDVGTGSARAGLFDESGK-LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~-i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
+++|||+|+|++|++|+|.+++ +.......++.. ..+| .+...+++++++++.+....+|..|+.|+.
T Consensus 2 ~~~GIDiGStttK~Vlid~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~l~~~~~~~g~~~~~i~~i~~TGY 70 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDGDKEECLAKRNDRIR------QRDP---FKLAEDAYDDLLEEAGLAAADVAYCATTGE 70 (262)
T ss_pred eEEEEEcCcccEEEEEEecCCCeeEEEEEEEecCC------CCCH---HHHHHHHHHHHHHHcCCChhheEEEEEECC
Confidence 6899999999999999996554 222222222210 1133 334566788888888876679999999875
No 37
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=96.84 E-value=0.0022 Score=67.55 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=51.5
Q ss_pred eEEEEEccccceeEEEEc-CCCCEEEEEEeeccccc-------------CCCccccCHHHHHHHHHHHHHHHHHHcCCCC
Q 009384 56 VFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWK-------------EGDCIEQSSTDIWHAICAAVDSACSLANVDG 121 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d-~~g~i~~~~~~~~~~~~-------------~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~ 121 (536)
|-++||||||++.+.++| .+|++++..+...|... .++..++=-..+.+.+.+++.++++++++++
T Consensus 2 ~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~ 81 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISP 81 (412)
T ss_dssp EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--G
T ss_pred EEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 678999999999999999 58999999988776432 2222222234456666777777777789989
Q ss_pred CCEEEEEEcC
Q 009384 122 EEVKGVGFAA 131 (536)
Q Consensus 122 ~~I~aIgis~ 131 (536)
++|..|.|++
T Consensus 82 ~~I~~i~i~G 91 (412)
T PF14574_consen 82 EDIYEIVIVG 91 (412)
T ss_dssp GGEEEEEEEE
T ss_pred HHeEEEEEEe
Confidence 9999999975
No 38
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.83 E-value=0.0034 Score=64.11 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=50.6
Q ss_pred CCCCCeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 009384 51 ARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (536)
Q Consensus 51 ~m~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis 130 (536)
.|+..++||||.|+|++|++|.+.+..+........+- .|. ..+++++++++.+....+|.++++|
T Consensus 131 ~~~~~~~LGID~GSTtTK~VLm~d~~~I~~~~~~~t~g---------~p~-----~~~~l~~~le~l~~~~~~I~~~~~T 196 (396)
T COG1924 131 EYQGMYTLGIDSGSTTTKAVLMEDGKEILYGFYVSTKG---------RPI-----AEKALKEALEELGEKLEEILGLGVT 196 (396)
T ss_pred hhcCcEEEEEecCCcceeEEEEeCCCeEEEEEEEcCCC---------Chh-----HHHHHHHHHHHcccChheeeeeeee
Confidence 36678999999999999999998777666555444331 122 3567778888877666899999999
Q ss_pred CC
Q 009384 131 AT 132 (536)
Q Consensus 131 ~~ 132 (536)
+.
T Consensus 197 GY 198 (396)
T COG1924 197 GY 198 (396)
T ss_pred cc
Confidence 84
No 39
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.80 E-value=0.003 Score=63.33 Aligned_cols=67 Identities=24% Similarity=0.358 Sum_probs=51.7
Q ss_pred EEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 009384 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (536)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgi 129 (536)
||||.|+|++|++|+|.+|+++......-..+ ...+.++..+.+.+++.+++++.+....+|..+++
T Consensus 1 lGIDgGgTkt~~vl~d~~g~il~~~~~~~~n~-----~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~ 67 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGNILGRGKGGGANY-----NSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICI 67 (271)
T ss_dssp EEEEECSSEEEEEEEETTSEEEEEEEES-TTH-----HHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred CEEeeChheeeeEEEeCCCCEEEEEEeCCCCC-----CCCCcchhhhHHHHHHHHHHHHcCCCccccceeee
Confidence 79999999999999999999887665432211 12356788889999999999998877777766654
No 40
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=96.76 E-value=0.003 Score=59.15 Aligned_cols=77 Identities=25% Similarity=0.375 Sum_probs=60.2
Q ss_pred EEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC-CeE
Q 009384 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC-SLV 136 (536)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~-~~v 136 (536)
||||+|+|.+-++++|.+.++++..+.++. +++....+.+++++++++.+.++.+|..|-+++++ .=.
T Consensus 2 igIDvGGT~TD~v~~d~~~~~~~~~K~~Tt-----------~~d~~~gi~~al~~l~~~~~~~~~~i~~v~~gTT~~tNA 70 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGVVATAKVPTT-----------PDDPAEGILEALDALLEESGIDPSDIDRVRHGTTVATNA 70 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCEEEEEEeCCC-----------CcCHHHHHHHHHHhhhcccCCChhhCcEEEeccHHHHHH
Confidence 799999999999999988788888777763 56677888899999998877778899999997753 223
Q ss_pred EEcCCCCee
Q 009384 137 AVDADGSPV 145 (536)
Q Consensus 137 ~vD~~G~pl 145 (536)
++..+|.++
T Consensus 71 l~e~~g~~v 79 (176)
T PF05378_consen 71 LLERKGARV 79 (176)
T ss_pred HHhccCCCc
Confidence 445555443
No 41
>PRK13318 pantothenate kinase; Reviewed
Probab=96.46 E-value=0.01 Score=59.12 Aligned_cols=63 Identities=21% Similarity=0.405 Sum_probs=43.6
Q ss_pred EEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 009384 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~ 131 (536)
+|+||+|.|++|.+++| +|+++...+.+++. ...++++. +.+++++++.+.+..+|.+|++|+
T Consensus 2 iL~IDIGnT~iK~al~d-~g~i~~~~~~~t~~-------~~~~~~~~----~~l~~l~~~~~~~~~~i~~I~iss 64 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-GGKLVAHWRISTDS-------RRTADEYG----VWLKQLLGLSGLDPEDITGIIISS 64 (258)
T ss_pred EEEEEECCCcEEEEEEE-CCEEEEEEEEeCCC-------CCCHHHHH----HHHHHHHHHcCCCcccCceEEEEE
Confidence 68999999999999999 68888776665542 22344444 445555565554445788999953
No 42
>PRK13321 pantothenate kinase; Reviewed
Probab=96.37 E-value=0.01 Score=59.10 Aligned_cols=63 Identities=25% Similarity=0.418 Sum_probs=42.5
Q ss_pred EEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 009384 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~ 131 (536)
+|+||+|.|++|++++|.+ +++...+.+++ ...+++++...+.+ ++++.+.+..+|.+|++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~-~i~~~~~~~T~-------~~~~~~~~~~~l~~----l~~~~~~~~~~i~~i~vss 64 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD-RLLRSFRLPTD-------KSRTSDELGILLLS----LFRHAGLDPEDIRAVVISS 64 (256)
T ss_pred EEEEEECCCeEEEEEEECC-EEEEEEEEecC-------CCCCHHHHHHHHHH----HHHHcCCChhhCCeEEEEe
Confidence 6899999999999999944 77766555554 22345666655444 4444344455788898854
No 43
>PRK00292 glk glucokinase; Provisional
Probab=96.32 E-value=0.0096 Score=61.07 Aligned_cols=67 Identities=22% Similarity=0.256 Sum_probs=41.7
Q ss_pred CeEEEEEccccceeEEEEcC-CCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEEcCC
Q 009384 55 SVFLGVDVGTGSARAGLFDE-SGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSL-ANVDGEEVKGVGFAAT 132 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~-~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~-~~~~~~~I~aIgis~~ 132 (536)
+++||||||.|++|++++|. +++++...+.+++ + ++.+.+.+.+++++ .+ .++.+|||+ .
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~~----------~----~~~~~~~l~~~l~~~~~---~~~~gigIg-~ 63 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWANGEIEQIKTYATA----------D----YPSLEDAIRAYLADEHG---VQVRSACFA-I 63 (316)
T ss_pred ceEEEEEcCccceEEEEEecCCCceeeeEEEecC----------C----CCCHHHHHHHHHHhccC---CCCceEEEE-E
Confidence 46899999999999999994 5666666555443 1 11234455555553 22 357778873 3
Q ss_pred CCeEEEcCC
Q 009384 133 CSLVAVDAD 141 (536)
Q Consensus 133 ~~~v~vD~~ 141 (536)
+| ++|.+
T Consensus 64 pG--~vd~~ 70 (316)
T PRK00292 64 AG--PVDGD 70 (316)
T ss_pred eC--cccCC
Confidence 44 44543
No 44
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.09 E-value=0.0085 Score=62.07 Aligned_cols=32 Identities=28% Similarity=0.683 Sum_probs=28.5
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeec
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPI 86 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~ 86 (536)
+|++|||+|+|++|++|+|.+++++.....+.
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g~Il~~~i~pT 33 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKGEVIGRGITNS 33 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCCcEEEEEecCC
Confidence 58999999999999999998888988777665
No 45
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=96.00 E-value=0.049 Score=55.11 Aligned_cols=63 Identities=22% Similarity=0.335 Sum_probs=46.6
Q ss_pred EEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCC
Q 009384 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (536)
++|||+|.|+++++++|.+|+++...+.+++. ..+++++.+.+.+.+++... ++.+|||+ .++
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~i~~~~~~~~~~-------~~~~~~~~~~i~~~i~~~~~-------~~~~igi~-~pG 65 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQIRQRRQIPTPA-------SQTPEALRQALSALVSPLQA-------QADRVAVA-STG 65 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCcEEEEEEecCCC-------CCCHHHHHHHHHHHHHHhhh-------cCcEEEEe-Ccc
Confidence 79999999999999999999999877766541 23567777777777766532 35578883 344
No 46
>PRK12408 glucokinase; Provisional
Probab=95.82 E-value=0.013 Score=60.70 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.2
Q ss_pred eEEEEEccccceeEEEEcCCCC
Q 009384 56 VFLGVDVGTGSARAGLFDESGK 77 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~ 77 (536)
++|++|||.|++|.+++|.+|+
T Consensus 17 ~~L~~DIGGT~i~~al~d~~g~ 38 (336)
T PRK12408 17 SFVAADVGGTHVRVALVCASPD 38 (336)
T ss_pred cEEEEEcChhhhheeEEeccCC
Confidence 3799999999999999998776
No 47
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=95.56 E-value=0.083 Score=56.49 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=52.7
Q ss_pred CCCCeEEEEEccccceeEEEEc--CCCC--EEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 009384 52 RSRSVFLGVDVGTGSARAGLFD--ESGK--LLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKG 126 (536)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d--~~g~--i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~a 126 (536)
|+.++++||||||+.+|+++.. .+|+ +++....+ ..- ..| .-.|.+..-+++.+++.++-+.++....++ .
T Consensus 5 ~~~~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~--s~gi~~G-~I~d~~~~~~aI~~av~~ae~~~g~~i~~v-~ 80 (420)
T PRK09472 5 TDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCP--SRGMDKG-GVNDLESVVKCVQRAIDQAELMADCQISSV-Y 80 (420)
T ss_pred cCCCEEEEEEcccceEEEEEEEEcCCCCEEEEEEEEcc--CCCccCC-EEEcHHHHHHHHHHHHHHHHHHhCCcccEE-E
Confidence 5557899999999999998876 3554 44444443 211 344 456899998888888888766666544443 3
Q ss_pred EEEcCCC
Q 009384 127 VGFAATC 133 (536)
Q Consensus 127 Igis~~~ 133 (536)
++|++.+
T Consensus 81 v~i~g~~ 87 (420)
T PRK09472 81 LALSGKH 87 (420)
T ss_pred EEecCcc
Confidence 6776643
No 48
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=95.53 E-value=0.061 Score=51.60 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=50.0
Q ss_pred CCCeEEEEEccccceeEEEEcCCCC-EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEEc
Q 009384 53 SRSVFLGVDVGTGSARAGLFDESGK-LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV-DGEEVKGVGFA 130 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~~g~-i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~-~~~~I~aIgis 130 (536)
+...+|+||+|+|+.|++++...|. .....+..+++ + ........+++++.|.+++.+.+++.+. +..+..-+|+|
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~i-p-~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~~~l~lGfT 138 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKI-P-EELMNGSGEELFDFIADCIAEFLKEHNLESRDEKLPLGFT 138 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE----HHHHTSBHHHHHHHHHHHHHHHHHHTTTTSTTSEEEEEEE
T ss_pred CCceEEEEeecCcEEEEEEEEEcCCCCceeeeccccC-C-hHHhcCCcccHHHHHHHHHHHHHHHhcccccccccceEEE
Confidence 3356899999999999999996544 33333333321 1 1112234589999999999999987653 34556667764
No 49
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=95.50 E-value=0.091 Score=49.53 Aligned_cols=72 Identities=24% Similarity=0.311 Sum_probs=47.7
Q ss_pred EEEEEccccceeEEEEc--CCC--CEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 009384 57 FLGVDVGTGSARAGLFD--ESG--KLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d--~~g--~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~ 131 (536)
++||||||+++|+++.. .+| ++++.... |..- ..| .-.|.+..-+++.++++++-++++....+ ..+++++
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~--~s~gi~~G-~I~d~~~~~~~I~~ai~~ae~~~~~~i~~-V~v~i~g 76 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEV--PSRGIRKG-VIVDIEAAARAIREAVEEAERMAGVKIDS-VYVGISG 76 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEe--cCCCccCc-EEECHHHHHHHHHHHHHHHHHHhCCcccE-EEEEEcC
Confidence 47999999999999986 345 44444433 3222 344 44588888888888888876666654333 3466655
Q ss_pred C
Q 009384 132 T 132 (536)
Q Consensus 132 ~ 132 (536)
.
T Consensus 77 ~ 77 (187)
T smart00842 77 R 77 (187)
T ss_pred C
Confidence 4
No 50
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=94.51 E-value=0.052 Score=61.28 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=41.7
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis 130 (536)
..+||||||+|++|++++|++|+++...+.+++. ++.+.+.+++++++.+. .+|.+|||+
T Consensus 18 ~~~L~iDIGGT~ir~al~~~~g~i~~~~~~~t~~--------------~~~~~~~i~~~l~~~~~--~~~~~igig 77 (638)
T PRK14101 18 GPRLLADVGGTNARFALETGPGEITQIRVYPGAD--------------YPTLTDAIRKYLKDVKI--GRVNHAAIA 77 (638)
T ss_pred CCEEEEEcCchhheeeeecCCCcccceeEEecCC--------------CCCHHHHHHHHHHhcCC--CCcceEEEE
Confidence 4589999999999999999999987766555431 13344566666665432 357777773
No 51
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=94.37 E-value=0.11 Score=54.20 Aligned_cols=66 Identities=9% Similarity=0.089 Sum_probs=44.1
Q ss_pred EEEEEccccceeEEEEcCCCCEEEEEEeec-ccccCCCccccCHHHHHHHHH---HHHHHHHHHcCCCCCCEEEEEE
Q 009384 57 FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAIC---AAVDSACSLANVDGEEVKGVGF 129 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~-~~~~~~g~~eqd~~~~~~~i~---~~l~~~~~~~~~~~~~I~aIgi 129 (536)
+|.|..|+||+|++||+.+++++....... +... +.+.+.+.+. +.+.+++++.++...+|.+|+-
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~~~~~~~~~~-------~~~~~~~q~~~r~~~i~~~l~~~~~~~~~i~av~~ 71 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEETLRHSVEELG-------RFKNVIDQFEFRKQVILQFLEEHGISISKLDAVVG 71 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeeeecCCHHHhc-------ccccHHHHHHHHHHHHHHHHHHcCCCcccccEEEE
Confidence 689999999999999999998876544433 2111 1223333333 6667777776666677888843
No 52
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=94.20 E-value=0.27 Score=51.63 Aligned_cols=75 Identities=19% Similarity=0.269 Sum_probs=48.9
Q ss_pred eEEEEEccccceeEEEEc--CCC--CEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 009384 56 VFLGVDVGTGSARAGLFD--ESG--KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d--~~g--~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~ 131 (536)
+++||||||+++|+++.. .++ ++++....+..- -..| .-.|.+.+-+++.++++++-++++....+ ..+++++
T Consensus 1 ~~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~g-i~~G-~I~d~~~~~~~i~~al~~~e~~~~~~i~~-v~~~v~g 77 (371)
T TIGR01174 1 LIVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSRG-IKKG-VINDIEAAVGSIQRAIEAAELMAGCEIRS-VIVSISG 77 (371)
T ss_pred CEEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCC-ccCc-EEEcHHHHHHHHHHHHHHHHHHhCCcccE-EEEEEcc
Confidence 368999999999999976 334 444444443221 1344 44588888888888888876666654443 4567765
Q ss_pred CC
Q 009384 132 TC 133 (536)
Q Consensus 132 ~~ 133 (536)
.+
T Consensus 78 ~~ 79 (371)
T TIGR01174 78 AH 79 (371)
T ss_pred cc
Confidence 43
No 53
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=93.73 E-value=0.34 Score=48.10 Aligned_cols=70 Identities=24% Similarity=0.257 Sum_probs=56.8
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC-EEEEEE
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEE-VKGVGF 129 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~-I~aIgi 129 (536)
+++.|++=|.|+.|.+++|++++++..++.....+. -.+.+..-+.|.+.++++..+.+.+... +.++|+
T Consensus 3 ~~y~GvEGgaT~s~~Vivd~~~~~~~~a~~~~Tnh~-----~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~lgL 73 (336)
T KOG1794|consen 3 DFYGGVEGGATCSRLVIVDEDGTILGRAVGGGTNHW-----LIGSTTCASRIEDMIREAKEKAGWDKKGPLRSLGL 73 (336)
T ss_pred ceeEeecCCcceeEEEEECCCCCEeeEeeccccccc-----cCCchHHHHHHHHHHHHHHhhcCCCccCccceeee
Confidence 689999999999999999999999988775543221 1235678889999999999999988776 777777
No 54
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=93.36 E-value=0.67 Score=46.36 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=39.9
Q ss_pred CCeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 009384 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~ 118 (536)
.++++||||||+++|+++.+.+++.+.....+-... +.|. -.|.+.....+.++++.+-+..+
T Consensus 23 ~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~v-r~G~-i~di~~a~~~i~~~~~~ae~~~g 85 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVV-RDGI-VVDFIGAVTIVRRLKATLEEKLG 85 (267)
T ss_pred CCEEEEEEccCceEEEEEEcCCCCEEEEEecccccc-CCCE-EeeHHHHHHHHHHHHHHHHHHhC
Confidence 579999999999999999987777655444332211 4444 55666665555555544433334
No 55
>PRK13317 pantothenate kinase; Provisional
Probab=93.10 E-value=0.24 Score=49.83 Aligned_cols=88 Identities=8% Similarity=0.031 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHhhhhhcCCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEc-----CCCCCChhHHHHHHHHHHHHH
Q 009384 423 VSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICG-----MTLDSSEKQLALLYLATVQGI 497 (536)
Q Consensus 423 ~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~G-----l~~~~~~~~~~~~~rAvlEgi 497 (536)
..+|++|.+++.+-. ...-++ .+-.++|...+....+.+.+.|| +.....++|++ ++++..+
T Consensus 140 ~~~~~el~~la~~g~---------~~~~Dl-~v~dIy~~~~~~l~i~s~csvFakv~~l~~~g~~~eDIa---asl~~~v 206 (277)
T PRK13317 140 ISDYEQLIELAKHGD---------RNNIDL-KVGDIYKGPLPPIPGDLTASNFGKVLHHLDSEFTSSDIL---AGVIGLV 206 (277)
T ss_pred CCCHHHHHHHHhcCC---------Cccccc-eeccccCCCCCCCCCceeEehhhhhhhhhccCCCHHHHH---HHHHHHH
Confidence 345777777765410 011122 22334433223345567777666 23445677865 5999888
Q ss_pred HHHHHHHHHHHHhCCCCccEEEEeccc
Q 009384 498 AYGTRHIVEHCNAHGHKVREHIFHSVF 524 (536)
Q Consensus 498 a~~~r~~le~l~~~g~~~~~I~~~GGg 524 (536)
+..+..+.-.+.+. ..+++|+++||+
T Consensus 207 ~~~I~~lA~~~ar~-~~~~~Ivf~G~g 232 (277)
T PRK13317 207 GEVITTLSIQAARE-KNIENIVYIGST 232 (277)
T ss_pred HHHHHHHHHHHHHh-cCCCeEEEECcc
Confidence 88777664443332 334689999953
No 56
>PLN02914 hexokinase
Probab=92.70 E-value=0.35 Score=52.36 Aligned_cols=64 Identities=14% Similarity=0.290 Sum_probs=45.1
Q ss_pred CCCeEEEEEccccceeEEEEcCCCC---EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 009384 53 SRSVFLGVDVGTGSARAGLFDESGK---LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~~g~---i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~ 118 (536)
++..+++||+|+|+.|+++++..|+ ++...+..+++ .+....-..+++|+-|.++|.+.+++..
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~i--p~~l~~gt~~eLFdfIA~~i~~fl~~~~ 159 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSI--PQELMFGTSEELFDFIASGLANFVAKEG 159 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecCCCCceeeeeEEEecC--ChhhccCCHHHHHHHHHHHHHHHHHhcc
Confidence 4457999999999999999996552 44443443332 1112233578999999999999998643
No 57
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=91.93 E-value=0.17 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.4
Q ss_pred EEEEccccceeEEEEcCCCCEEEE
Q 009384 58 LGVDVGTGSARAGLFDESGKLLGS 81 (536)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~i~~~ 81 (536)
|.+|||.|++|++++|++++++..
T Consensus 1 l~~DIGGT~i~~glvd~~g~~l~~ 24 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPGEISQ 24 (316)
T ss_pred CeEecCcceeeEEEEecCCCceee
Confidence 579999999999999988766544
No 58
>PLN02362 hexokinase
Probab=91.75 E-value=0.55 Score=51.17 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=43.4
Q ss_pred CCCeEEEEEccccceeEEEEcCCCC---EEEE--EEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 009384 53 SRSVFLGVDVGTGSARAGLFDESGK---LLGS--ASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~~g~---i~~~--~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~ 118 (536)
+...+++||+|+|+.|+++++..|+ .+.. ...+.|... ..-..+++|+-|.++|.+.+++.+
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l----~~~~~~eLFd~IA~~i~~fl~~~~ 159 (509)
T PLN02362 93 EIGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQHL----MNSTSEVLFDFIASSLKQFVEKEE 159 (509)
T ss_pred cceeEEEEecCCceEEEEEEEecCCCcceeeceeEEEecChhh----ccCCHHHHHHHHHHHHHHHHHhcC
Confidence 3456999999999999999997653 2222 223333211 223578999999999999998754
No 59
>PLN02405 hexokinase
Probab=91.38 E-value=0.56 Score=50.93 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=44.9
Q ss_pred CCCeEEEEEccccceeEEEEcCCCC---EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 009384 53 SRSVFLGVDVGTGSARAGLFDESGK---LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~~g~---i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~ 118 (536)
+...+++||+|+|+.|++++...|+ .+...+..+++ .+....-..+++|+-|.++|.+.+++.+
T Consensus 93 E~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~i--p~~~~~gt~~~LFdfIA~~i~~fl~~~~ 159 (497)
T PLN02405 93 EKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSI--PPHLMTGSSDALFDFIAAALAKFVATEG 159 (497)
T ss_pred cceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeec--ChhhccCCHHHHHHHHHHHHHHHHHhcc
Confidence 3457999999999999999996652 34433333332 1122234678899999999999998754
No 60
>PLN02596 hexokinase-like
Probab=91.27 E-value=0.56 Score=50.84 Aligned_cols=64 Identities=11% Similarity=0.176 Sum_probs=44.0
Q ss_pred CCCeEEEEEccccceeEEEEcCCCC---EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 009384 53 SRSVFLGVDVGTGSARAGLFDESGK---LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~~g~---i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~ 118 (536)
+...+|+||+|+|+.|+++++..|+ +....+..+++ ......-..+++|+-|.++|.+.+++.+
T Consensus 94 E~G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~I--p~~l~~~t~~eLFd~IA~~i~~fl~~~~ 160 (490)
T PLN02596 94 EKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISI--PSNVLNGTSQELFDYIALELAKFVAEHP 160 (490)
T ss_pred cceEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecC--ChHhhcCCHHHHHHHHHHHHHHHHHhhc
Confidence 3456899999999999999997663 23333333322 1112233578899999999999998653
No 61
>PF13941 MutL: MutL protein
Probab=90.20 E-value=1.1 Score=48.04 Aligned_cols=54 Identities=26% Similarity=0.436 Sum_probs=41.4
Q ss_pred EEEEEccccceeEEEEc---CCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 009384 57 FLGVDVGTGSARAGLFD---ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV 119 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d---~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~ 119 (536)
+|.+|+|+|.+|+.+|| .+.++++.++.++. ++ +.++...+.++++++-++.+.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTT-------v~--~~Dv~~G~~~A~~~l~~~~~~ 58 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTT-------VE--PGDVTIGLNNALEQLEEQTPA 58 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCC-------cC--cccHHHHHHHHHHHHHHhcCC
Confidence 68899999999999999 46788888887775 22 246677777788877776553
No 62
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=89.92 E-value=1.4 Score=44.36 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHhhhhhcCCCCCCCCCCCeEEccccCCCC--CCCCCCCCcEEEEc-C-----CCCCChhHHHHHHHHH
Q 009384 422 HVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNR--SPIADPKSKGIICG-M-----TLDSSEKQLALLYLAT 493 (536)
Q Consensus 422 ~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger--~P~~d~~arg~f~G-l-----~~~~~~~~~~~~~rAv 493 (536)
+..+|+++.+++++-. ...-++ .+-..+|.. .+--+.+...+-+| + .....++|++ +++
T Consensus 144 ~~~~~~el~~lA~~G~---------~~~vDl-~V~dIYg~~y~~~~L~~d~iASsfGkv~~~~~~~~~~~eDiA---aSL 210 (279)
T TIGR00555 144 GIQTFDELLEMAQHGD---------RTNVDL-LVGDIYGGDYSESGLDGSLTASSFGKVLSKHLDQSFSPEDIA---ASL 210 (279)
T ss_pred CCCCHHHHHHHHHcCC---------Cccccc-ccccccCCCCCCCCCCcceeeeccchhhccccccCCCHHHHH---HHH
Confidence 3456788877775411 011122 234444421 11234556666677 3 2345688865 499
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccEEEEecccc
Q 009384 494 VQGIAYGTRHIVEHCNAHGHKVREHIFHSVFY 525 (536)
Q Consensus 494 lEgia~~~r~~le~l~~~g~~~~~I~~~GGgs 525 (536)
+..|+..+-.+. .+...-...++|++.||.-
T Consensus 211 l~mV~~nIg~lA-~~~a~~~~~~~IvF~Gg~L 241 (279)
T TIGR00555 211 LGLIGNNIGQIA-YLCALRYNIDRIVFIGSFL 241 (279)
T ss_pred HHHHHHHHHHHH-HHHHHHcCCCeEEEECCcc
Confidence 999988776554 3333234567899999853
No 63
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=89.83 E-value=2.2 Score=45.42 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=47.3
Q ss_pred eEEEEEccccceeEEEEc--CCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 009384 56 VFLGVDVGTGSARAGLFD--ESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d--~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~ 131 (536)
+++|+||||+.+++++-- .+|++--...-..+-.- ..| .-.|.+..-+++.+++.++-..+|....++ .+++++
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~~SrGik~G-~I~di~~~~~sI~~av~~AE~mag~~i~~v-~vs~sG 83 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSHPSRGIKKG-VIVDLDAAAQSIKKAVEAAERMAGCEIKSV-IVSLSG 83 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecccCcccccc-eEEcHHHHHHHHHHHHHHHHHhcCCCcceE-EEEecc
Confidence 899999999999999876 34432222221222111 334 345899999998888888877777544332 355554
No 64
>PRK13324 pantothenate kinase; Reviewed
Probab=89.55 E-value=1.1 Score=44.51 Aligned_cols=63 Identities=19% Similarity=0.369 Sum_probs=38.7
Q ss_pred EEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 009384 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis 130 (536)
+|.||+|-|++|.+++|. ++++...+.++.. .....+++. ..++.++++.+.+..+|..|.+|
T Consensus 2 iL~iDiGNT~ik~gl~~~-~~~~~~~r~~t~~------~~~t~de~~----~~l~~~~~~~~~~~~~i~~viis 64 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG-DRIVSQIRYATSS------VDSTSDQMG----VFLRQALRENSVDLGKIDGCGIS 64 (258)
T ss_pred EEEEEeCCCceEEEEEEC-CEEEEEEEEecCc------cccchHHHH----HHHHHHHHhcCCCccCCCeEEEE
Confidence 689999999999999993 4555544443310 112334444 34555555545555567777774
No 65
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=89.46 E-value=1 Score=44.32 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=32.3
Q ss_pred EEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHH
Q 009384 59 GVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDS 112 (536)
Q Consensus 59 gIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~ 112 (536)
||||||+++|+++.+.+++.++.. +.|..+ ..| .-.|.+.....+..+++.
T Consensus 1 g~dig~~~ik~v~~~~~~~~~~~~--~~~~~~~~~g-~I~d~~~~~~~l~~l~~~ 52 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDGQPVAGV--MQFADVVRDG-IVVDFLGAVEIVRRLKDT 52 (239)
T ss_pred CCCcccceEEEEEEecCCCEEEEE--ecccccccCC-eEEEhHHHHHHHHHHHHH
Confidence 799999999999999777644433 333333 333 445777665554444433
No 66
>PTZ00107 hexokinase; Provisional
Probab=89.31 E-value=1.7 Score=47.00 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=43.7
Q ss_pred CCCeEEEEEccccceeEEEEcCCCC-EEEEEE--eecccccCCC-----ccccCHHHHHHHHHHHHHHHHHHcC
Q 009384 53 SRSVFLGVDVGTGSARAGLFDESGK-LLGSAS--SPIQIWKEGD-----CIEQSSTDIWHAICAAVDSACSLAN 118 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~~g~-i~~~~~--~~~~~~~~~g-----~~eqd~~~~~~~i~~~l~~~~~~~~ 118 (536)
+...+|+||+|+|+.|++++...|+ .....+ ...|.....| --+...+++|+-|.++|.+.+++..
T Consensus 72 E~G~fLAlDlGGTN~RV~~V~L~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~ 145 (464)
T PTZ00107 72 EKGVYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENG 145 (464)
T ss_pred ccceEEEEecCCceEEEEEEEeCCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 3346899999999999999997654 222222 2233221111 1122578999999999999998754
No 67
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=89.09 E-value=0.89 Score=46.52 Aligned_cols=33 Identities=30% Similarity=0.646 Sum_probs=28.4
Q ss_pred EEEEccccceeEEEEcCCCCEEEEEEeeccccc
Q 009384 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWK 90 (536)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~ 90 (536)
||+|||+-++|++++|.+|++........|++.
T Consensus 1 ~G~DiGGA~~K~a~~~~~g~~~~v~~~~~plW~ 33 (318)
T TIGR03123 1 LGIDIGGANTKAAELDEDGRIKEVHQLYCPLWK 33 (318)
T ss_pred CccccccceeeeEEecCCCceeEEEEecCcccC
Confidence 689999999999999999988887777777653
No 68
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=88.68 E-value=2.3 Score=44.07 Aligned_cols=72 Identities=15% Similarity=0.226 Sum_probs=44.5
Q ss_pred CeEEEEEccccceeEEEEcC-CC--CEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 009384 55 SVFLGVDVGTGSARAGLFDE-SG--KLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~-~g--~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis 130 (536)
..++|||||++++|++.+.. .+ ++......+.|.-. ..|. -+|.+.+ .++|++++++.+.... -..+++.
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g~-i~d~~~~----~~~l~~~~~~~~~~~k-~v~~alp 76 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEGH-IVEYQAV----AEALKELLSELGINTK-KAATAVP 76 (348)
T ss_pred CcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCCC-ccCHHHH----HHHHHHHHHHcCCCcc-eEEEEec
Confidence 46899999999999999984 33 44445555655322 3332 3466554 4566666666664333 3456675
Q ss_pred CC
Q 009384 131 AT 132 (536)
Q Consensus 131 ~~ 132 (536)
+.
T Consensus 77 ~~ 78 (348)
T TIGR01175 77 GS 78 (348)
T ss_pred CC
Confidence 54
No 69
>PTZ00288 glucokinase 1; Provisional
Probab=88.54 E-value=3.1 Score=44.15 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=39.1
Q ss_pred CCCeEEEEEccccceeEEEEcC---CCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHH
Q 009384 53 SRSVFLGVDVGTGSARAGLFDE---SGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSL 116 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~---~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~ 116 (536)
..+|++|+|||.|++|+++++. ++..+...+.++++. -+|..+..+.+.+.+..+.+.
T Consensus 24 ~~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ 84 (405)
T PTZ00288 24 SGPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNVT------KTDIRELLEFFDEVLQKLKKN 84 (405)
T ss_pred cCCeEEEEEecCCceEEEEEeccCCCCCceeEEEEecccc------cccHHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999985 333444444554411 235667777777777666553
No 70
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=88.11 E-value=1.7 Score=40.97 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=27.1
Q ss_pred CCeEEEEEccccceeEEEEcCCCCEEEEEE
Q 009384 54 RSVFLGVDVGTGSARAGLFDESGKLLGSAS 83 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~ 83 (536)
.++.+|+|+||.++-..++|.+|+.++-.-
T Consensus 28 sk~~vGVDLGT~~iV~~vlD~d~~Pvag~~ 57 (277)
T COG4820 28 SKLWVGVDLGTCDIVSMVLDRDGQPVAGCL 57 (277)
T ss_pred CceEEEeecccceEEEEEEcCCCCeEEEEe
Confidence 489999999999999999999999987653
No 71
>PRK03011 butyrate kinase; Provisional
Probab=88.07 E-value=1.4 Score=46.11 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=43.6
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeeccccc---CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVG 128 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~---~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIg 128 (536)
.+|.|.-|+||+|+++|+ +.+.+......++... -+...+| .++- .+.+.+.+++.++...+|.+|+
T Consensus 3 ~il~inpgststk~a~~~-~~~~~~~~~~~h~~~~~~~~~~~~~q--~~~r---~~~i~~~l~~~g~~~~~l~av~ 72 (358)
T PRK03011 3 RILVINPGSTSTKIAVFE-DEKPIFEETLRHSAEELEKFKTIIDQ--YEFR---KQAILDFLKEHGIDLSELDAVV 72 (358)
T ss_pred EEEEEcCCCchheEEEEc-CCceeeeeccccCHHHHhcCCCccch--HHHH---HHHHHHHHHHcCCChhcceEEE
Confidence 489999999999999997 4555666655554221 1222333 2232 3456667777777777888873
No 72
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=87.49 E-value=2.5 Score=43.83 Aligned_cols=78 Identities=13% Similarity=0.231 Sum_probs=56.7
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCC-Cccc-cCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEG-DCIE-QSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~-g~~e-qd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (536)
.+||||--+..+-++|+|.+|+++........ .... |-+. .....-.+.+..+++++++++++...+|.+|++|..+
T Consensus 2 ~iLgIETScd~tsvAl~~~~~~il~~~~~sq~-~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GP 80 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTSDGEILSNVRETYI-TPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKGP 80 (345)
T ss_pred eEEEEEccchhhEEEEEECCCcEEEEEEeecc-ccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence 48999999999999999977888876554332 1111 3222 2234456677788899999988888999999997665
Q ss_pred C
Q 009384 134 S 134 (536)
Q Consensus 134 ~ 134 (536)
|
T Consensus 81 G 81 (345)
T PTZ00340 81 G 81 (345)
T ss_pred C
Confidence 5
No 73
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=87.31 E-value=1.8 Score=44.88 Aligned_cols=39 Identities=8% Similarity=0.024 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--CCCCccEEEEecccccc
Q 009384 489 LYLATVQGIAYGTRHIVEHCNA--HGHKVREHIFHSVFYLS 527 (536)
Q Consensus 489 ~~rAvlEgia~~~r~~le~l~~--~g~~~~~I~~~GGgs~s 527 (536)
.++.+++-++-++++.++.+.. .+.++++|+++|||+..
T Consensus 247 ~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l 287 (340)
T PF11104_consen 247 ALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARL 287 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccch
Confidence 4678899999999999998765 36689999999998654
No 74
>PRK13331 pantothenate kinase; Reviewed
Probab=86.20 E-value=2.6 Score=41.71 Aligned_cols=39 Identities=10% Similarity=-0.040 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCccEEEEecccccccccc
Q 009384 491 LATVQGIAYGTRHIVEHCNAH-GHKVREHIFHSVFYLSQSRT 531 (536)
Q Consensus 491 rAvlEgia~~~r~~le~l~~~-g~~~~~I~~~GGgs~s~~~~ 531 (536)
..++-|.+..+..+++.+++. + + -.|+++||.+..=++.
T Consensus 181 sGi~~g~~g~i~~~i~~~~~~~~-~-~~vi~TGG~a~~l~~~ 220 (251)
T PRK13331 181 SGVIYTILAGLRDFIEDWLSLFP-D-GKIVLTGGDGELLHNY 220 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEECCCHHHHHHH
Confidence 477777777777777777763 4 3 3799999987654443
No 75
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.84 E-value=2.1 Score=43.53 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=41.4
Q ss_pred eEEEEEccccceeEEEEcCCCC---EEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 009384 56 VFLGVDVGTGSARAGLFDESGK---LLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEE 123 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~---i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~ 123 (536)
..+|||||++++|++-....|+ +.+....+.|.-. .+| --+|++. +.+.|++++.++++.-.+
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~kLe~y~~~~lp~~iv~dg-~ivd~~a----v~~~Lk~ala~~gi~~k~ 77 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRYKLEKYASEPLPENIVADG-KIVDYDA----VASALKRALAKLGIKSKN 77 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCceeeeeeeecccCccccccC-CcccHHH----HHHHHHHHHHhcCcchhh
Confidence 5899999999999999986553 4444455555433 333 2345655 456788888887754333
No 76
>PRK09604 UGMP family protein; Validated
Probab=85.15 E-value=3.9 Score=42.31 Aligned_cols=79 Identities=16% Similarity=0.282 Sum_probs=54.0
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeec-cccc-CCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWK-EGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~-~~~~-~~g~~-eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
++||||--+..+-++|+|.+++++....... .... ..|-. +.....--+.+...+++++++++.++.+|.+|+++..
T Consensus 2 ~iLgIdTS~~~~sval~~~~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~did~iavt~G 81 (332)
T PRK09604 2 LILGIETSCDETSVAVVDDGRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLEDIDAIAVTAG 81 (332)
T ss_pred eEEEEEccccceEEEEEECCCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 4899999777788999987668887655332 1111 12221 2223444566777888999998888899999999765
Q ss_pred CC
Q 009384 133 CS 134 (536)
Q Consensus 133 ~~ 134 (536)
++
T Consensus 82 PG 83 (332)
T PRK09604 82 PG 83 (332)
T ss_pred CC
Confidence 54
No 77
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=84.17 E-value=4 Score=45.10 Aligned_cols=77 Identities=22% Similarity=0.297 Sum_probs=54.9
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~-eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (536)
++||||--+..+-++|++.+|++++.....+. .+..|-+ +.....-.+.+...++++++++++...+|.+|+++..+
T Consensus 2 ~il~iets~~~~s~a~~~~~~~~~~~~~~~~~-~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~gP 79 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDSDGDVLFNESDPYK-PPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDLVAFSQGP 79 (535)
T ss_pred EEEEEEccccceEEEEEeCCCcEEEEEEeecc-CCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEECCCC
Confidence 58999999999999999966788877654421 1122322 11223355677788899999999888999999998554
No 78
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=83.84 E-value=4.1 Score=39.79 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=41.6
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~ 131 (536)
..++|||-|||.+|.+++|.++.+...-.+ .| ....- =...++++-+++++..++|.-|+++.
T Consensus 3 m~fVGiDHGTsgi~~ai~d~e~~~~Fklgr----------ae--~~~~~--ek~~L~~l~de~~i~l~eidlialtY 65 (332)
T COG4020 3 MMFVGIDHGTSGIKFAIYDGEKDPEFKLGR----------AE--LRKVA--EKSLLRELEDEARIALEEIDLIALTY 65 (332)
T ss_pred eEEEeecCCCcceEEEEEcCCCCceEEech----------hh--hhhhh--HHHHHHHhhHhhCCccccceEEEEee
Confidence 468999999999999999977765442211 11 11110 12345555556667788999999985
No 79
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=83.70 E-value=3.2 Score=43.71 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=42.1
Q ss_pred CCCeEEEEEccccceeEEEEcC--CCCEEEEEEee-cccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 009384 53 SRSVFLGVDVGTGSARAGLFDE--SGKLLGSASSP-IQIWKEGDCIEQSSTDIWHAICAAVDSACSLA 117 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~--~g~i~~~~~~~-~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~ 117 (536)
+..-+|+||+|+|+.|++++.. +|+..-..+.. .|....+ .+.++++|..+.+.++..+++.
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~~sks~lp~e~~~---~~~~~~l~~~iadrl~~fi~~~ 137 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIEQSKSFLPVECRD---SESRDELFGFIADRLAAFIKEQ 137 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcccccCcccCchhhcc---CCChHHHHHHHHHHHHHHHHHh
Confidence 3457999999999999999985 45443222211 2211122 1268999999999999988764
No 80
>PRK13326 pantothenate kinase; Reviewed
Probab=83.38 E-value=3.9 Score=40.81 Aligned_cols=40 Identities=5% Similarity=-0.147 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEecccccccccc
Q 009384 491 LATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVFYLSQSRT 531 (536)
Q Consensus 491 rAvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGgs~s~~~~ 531 (536)
..++.|.+..+..+++.+++ .+.+ -.|+++||.+..-++.
T Consensus 193 sGi~~g~~~~I~g~i~~~~~e~~~~-~~vv~TGG~a~~l~~~ 233 (262)
T PRK13326 193 SGVIYQYKYLIEGVYHDLKRNYDRE-FNLIITGGNSNLILPL 233 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCHHHHHhh
Confidence 47777777777888888776 3433 3799999987654443
No 81
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=83.20 E-value=3 Score=44.59 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=27.7
Q ss_pred CCeEEEEEccccceeEEEEc-CCCCEEEEEEee
Q 009384 54 RSVFLGVDVGTGSARAGLFD-ESGKLLGSASSP 85 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d-~~g~i~~~~~~~ 85 (536)
+.|-+++|+|||.+++-++| .+|+++++..-.
T Consensus 163 ~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~ 195 (614)
T COG3894 163 EAYGVAVDLGTSGIRAQLVDLKSGEVVATVITS 195 (614)
T ss_pred eeeeeEEecccceeeeEEEeccCCcEEEeeecc
Confidence 45889999999999999999 689999887543
No 82
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=82.51 E-value=1.9 Score=42.90 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=29.3
Q ss_pred CCCCeEEEEEccccceeEEEEcCCCCEEEEEEee
Q 009384 52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSP 85 (536)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~ 85 (536)
|++.+++.||=|||+.|+-|++.+|+++.+..-.
T Consensus 2 m~~~~~i~iDWGTT~~R~wL~~~dg~~l~~r~~~ 35 (306)
T COG3734 2 MSEPAYIAIDWGTTNLRAWLVRGDGAVLAERRSE 35 (306)
T ss_pred CCCceEEEEecCCccEEEEEEcCCcceeeeeccc
Confidence 5567899999999999999999999998765544
No 83
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=80.92 E-value=4.9 Score=41.31 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=52.0
Q ss_pred EEEEccccceeEEEEcCCCCEEEEEEeecccccCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCC
Q 009384 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (536)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~-eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (536)
||||-.+..+-++|++.++++++....... ....|.. +.....--+.+...++++++++++++.+|.+|+++..++
T Consensus 1 Lgiets~~~~s~al~~~~~~i~~~~~~~~~-~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg 77 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDEDGEILANVSDTYV-PEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPG 77 (322)
T ss_pred CEEeccccceEEEEEECCCeEEEEEEeecc-cCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCc
Confidence 588887777888999877787776654431 1123333 122334445567778899999888889999999976543
No 84
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=80.83 E-value=5.9 Score=40.44 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=54.2
Q ss_pred EEEEccccceeEEEEcCCCCEEEEEEeecccc-c-CCCc-cccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCC
Q 009384 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIW-K-EGDC-IEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (536)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~-~-~~g~-~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (536)
||||--+..+-++|+|.+++++.......... . ..|- .+.....--+.+...+++++++++.++.+|.+|+++..+|
T Consensus 1 LaidTs~~~~sval~~~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG 80 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDEEGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPG 80 (305)
T ss_pred CEEecCccceEEEEEECCCcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCC
Confidence 58998888899999986578887765554322 1 2221 1223444556677788899998888899999999976654
No 85
>PRK13317 pantothenate kinase; Provisional
Probab=80.13 E-value=18 Score=36.41 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=23.8
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEE
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSA 82 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~ 82 (536)
++.+|||+|+|.+|++++|+++++....
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~~~~~~~~ 29 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEKKQRTFKT 29 (277)
T ss_pred CceEEEEeCcccEEEEEEcCCCeEEEEe
Confidence 4789999999999999999888776443
No 86
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=79.94 E-value=5.6 Score=39.20 Aligned_cols=37 Identities=8% Similarity=-0.087 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEecccccc
Q 009384 490 YLATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVFYLS 527 (536)
Q Consensus 490 ~rAvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGgs~s 527 (536)
-..++.|.+..+..+++.+++ .+.+ -.++++||.+..
T Consensus 182 ~sG~~~g~~~~i~~~i~~~~~~~~~~-~~vi~TGG~a~~ 219 (243)
T TIGR00671 182 QSGAVYGVLGLIQGLLKDWKKYFKRK-FAVVITGGDGKY 219 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCchHh
Confidence 347777777777788887765 3433 379999998765
No 87
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=78.56 E-value=5.6 Score=37.91 Aligned_cols=63 Identities=14% Similarity=0.281 Sum_probs=45.7
Q ss_pred EEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
+|+||--|..+-+++++ +++++....... ...--+.+...+++++++++....+|.+|+++..
T Consensus 1 iLaidTs~~~~sval~~-~~~~~~~~~~~~------------~~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~~G 63 (202)
T TIGR03725 1 ILAIDTSTEALSVALLD-DGEILAERSEEA------------GRNHSEILLPMIEELLAEAGLSLQDLDAIAVGVG 63 (202)
T ss_pred CEEEECCCcceEEEEEE-CCEEEEEEeehh------------hHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 47899999999999998 677776543322 2223344556778888888888899999999765
No 88
>PLN02666 5-oxoprolinase
Probab=78.16 E-value=5.4 Score=48.40 Aligned_cols=83 Identities=12% Similarity=0.069 Sum_probs=48.7
Q ss_pred CCCeEEEEEccccceeEEEEcCCCCEEEEEEeec--ccccCCCccccCHH-HHHHHHHHHHHHHH-----HHcCCCCCCE
Q 009384 53 SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPI--QIWKEGDCIEQSST-DIWHAICAAVDSAC-----SLANVDGEEV 124 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~--~~~~~~g~~eqd~~-~~~~~i~~~l~~~~-----~~~~~~~~~I 124 (536)
++.|.+|||+|+|-+-++++|.++.-+...+.+. | .|+. .+.+.+.++++.++ ...++++.+|
T Consensus 7 ~~~~rigIDvGGTFTD~v~~~~~~~~~~~~K~~sttp---------~d~~~gv~~Gi~~~l~~~~~~~~~~~~~~~~~~i 77 (1275)
T PLN02666 7 SRKFRFCIDRGGTFTDVYAEVPGGSDFRVLKLLSVDP---------ANYDDAPREGIRRILEEVTGKKIPRSAKIPTERI 77 (1275)
T ss_pred CCCEEEEEECCcCCEeEEEEecCCCeEEEEEeCCCCC---------CChhHHHHHHHHHHHHHHhcCCcccccCCChHHc
Confidence 3578999999999999999997665333334332 2 1333 34555555554443 1224455677
Q ss_pred EEEEEcCC-CCeEEEcCCCCe
Q 009384 125 KGVGFAAT-CSLVAVDADGSP 144 (536)
Q Consensus 125 ~aIgis~~-~~~v~vD~~G~p 144 (536)
..|..+++ .+=.++..+|..
T Consensus 78 ~~v~hGTT~atNAllerkGa~ 98 (1275)
T PLN02666 78 EWIRMGTTVATNALLERKGER 98 (1275)
T ss_pred cEEEEechHHHHHHHhccCCc
Confidence 77777654 222344455544
No 89
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=77.43 E-value=3.7 Score=42.25 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=40.8
Q ss_pred EEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCC
Q 009384 59 GVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (536)
Q Consensus 59 gIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (536)
|||=||+|..++.+|.+|+++...+.+... +..+|..+.+. +++. .++..|+..+.+|
T Consensus 1 GIDpGT~s~dv~~~dd~g~v~~~~~ipt~~------v~~~p~~iv~~----l~~~--------~~~dlIa~psGyG 58 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDDDGKVIFYFSIPTEE------VAKNPSIIVEE----LEEF--------GDIDLIAGPSGYG 58 (343)
T ss_pred CCCCCCCcEEEEEEccCCcEEEEeeccHHH------hhhCHHHHHHH----HHhc--------cCCCEEEeCCcCC
Confidence 799999999999999999999888777642 34567654433 2221 3677777765443
No 90
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=77.09 E-value=9.8 Score=38.99 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=52.3
Q ss_pred EEEEEccccceeEEEEcCCCCEEEEEEeec-cccc-CCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 009384 57 FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWK-EGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~-~~~~-~~g~~-eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (536)
+|+||--+..+-++|+|.+++++....... .... ..|-. +.....--+.+...+++++++++....+|.+|+++..+
T Consensus 1 iLaIdTs~~~~sval~~~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GP 80 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDDGKGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGP 80 (314)
T ss_pred CEEEECcccceEEEEEECCceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence 489999999999999986545776655432 1111 12211 11234455667778888888888888999999997665
Q ss_pred C
Q 009384 134 S 134 (536)
Q Consensus 134 ~ 134 (536)
|
T Consensus 81 G 81 (314)
T TIGR03723 81 G 81 (314)
T ss_pred C
Confidence 4
No 91
>PRK13320 pantothenate kinase; Reviewed
Probab=76.30 E-value=9.4 Score=37.63 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=20.6
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEE
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGS 81 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~ 81 (536)
++|.||+|-|++|.++++. ++++..
T Consensus 3 M~L~iDiGNT~ik~~~~~~-~~~~~~ 27 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEG-DELLEV 27 (244)
T ss_pred eEEEEEeCCCcEEEEEEEC-CEEEEE
Confidence 4899999999999999984 566543
No 92
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.80 E-value=8 Score=43.78 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=26.4
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeec
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPI 86 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~ 86 (536)
++.+|||+|+|.+=++++|.++.++...+..+
T Consensus 2 ~~~iGID~GGTfTDaV~~~~~~g~~~~~K~lT 33 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDEDGGVLATIKVLT 33 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeCCCCEEEEEEccC
Confidence 57899999999999999998776666666554
No 93
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=75.48 E-value=18 Score=32.31 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.4
Q ss_pred eEEEEEccccceeEEEEcCCCCE
Q 009384 56 VFLGVDVGTGSARAGLFDESGKL 78 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i 78 (536)
.+||||+|+..+=+++.|..+.+
T Consensus 5 ~iLalD~G~kriGvAv~d~~~~~ 27 (138)
T PRK00109 5 RILGLDVGTKRIGVAVSDPLGGT 27 (138)
T ss_pred cEEEEEeCCCEEEEEEecCCCCE
Confidence 39999999999999999987765
No 94
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=74.34 E-value=5 Score=34.80 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=27.3
Q ss_pred EEEEEccccceeEEEEcCCCCEEEEEEeecccccCCC---ccccCHHHHHHHHHHHHHHH
Q 009384 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGD---CIEQSSTDIWHAICAAVDSA 113 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g---~~eqd~~~~~~~i~~~l~~~ 113 (536)
+++||+|++.++++++.. ++.......++...+..| ..-.|.+++-+++...+.++
T Consensus 1 i~~iDiGs~~~~~~i~~~-~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~~~A 59 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAED-GSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAIEEA 59 (120)
T ss_dssp EEEEEE-SSSEEEEEEET-TEEEEEEEES----------HHHHH--HHHHHHHT--HHHH
T ss_pred CEEEEcCCCcEEEEEEEe-CCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHHHHHH
Confidence 578999999999999975 334444444443333222 22235566655555555554
No 95
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=74.27 E-value=10 Score=33.64 Aligned_cols=32 Identities=34% Similarity=0.532 Sum_probs=26.4
Q ss_pred CCeEEEEEccccceeEEEEcCCCCEEEEEEeec
Q 009384 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPI 86 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~ 86 (536)
..+++|||=|||.. ++++|.+|+++...+...
T Consensus 31 ~~lIVGiDPG~ttg-iAildL~G~~l~l~S~R~ 62 (138)
T PF04312_consen 31 RYLIVGIDPGTTTG-IAILDLDGELLDLKSSRN 62 (138)
T ss_pred CCEEEEECCCceeE-EEEEecCCcEEEEEeecC
Confidence 46789999999876 678899999998877654
No 96
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=73.51 E-value=65 Score=32.44 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=23.0
Q ss_pred EEEEEccccceeEEEEcCCCCEEEEEE
Q 009384 57 FLGVDVGTGSARAGLFDESGKLLGSAS 83 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i~~~~~ 83 (536)
.+|||+|+|-+|.+..|++++++....
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~~~f~~~ 28 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGRRKFKTF 28 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCcEEEEEe
Confidence 589999999999999998888875443
No 97
>PRK10854 exopolyphosphatase; Provisional
Probab=73.12 E-value=16 Score=40.12 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=42.9
Q ss_pred CeEEEEEccccceeEEEEcC-CC--CEEEEEEeeccccc---CCCccccCHHHHHHHHHHHHHHH---HHHcCCCCCCEE
Q 009384 55 SVFLGVDVGTGSARAGLFDE-SG--KLLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSA---CSLANVDGEEVK 125 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~-~g--~i~~~~~~~~~~~~---~~g~~eqd~~~~~~~i~~~l~~~---~~~~~~~~~~I~ 125 (536)
..+.+|||||.|+|..+++. +| +++...+..+..-. ..|. .+++ -.+..++++++. ++..+ ..++.
T Consensus 11 ~~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~--Ls~e-~~~r~~~~L~~F~~~~~~~~--v~~v~ 85 (513)
T PRK10854 11 QEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNM--LSEE-AMERGLNCLSLFAERLQGFS--PANVC 85 (513)
T ss_pred CEEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCC--cCHH-HHHHHHHHHHHHHHHHHhCC--CCeEE
Confidence 46899999999999999984 44 34444444443211 2232 2333 344455555544 44433 35788
Q ss_pred EEEEcCC
Q 009384 126 GVGFAAT 132 (536)
Q Consensus 126 aIgis~~ 132 (536)
+++-++.
T Consensus 86 ~vATsAl 92 (513)
T PRK10854 86 IVGTHTL 92 (513)
T ss_pred EEehHHH
Confidence 8887653
No 98
>PRK14878 UGMP family protein; Provisional
Probab=72.26 E-value=10 Score=38.98 Aligned_cols=75 Identities=13% Similarity=0.200 Sum_probs=50.2
Q ss_pred EEEEccccceeEEEEcCCCCEEEEEEeecccccCCCcccc-CHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCC
Q 009384 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQ-SSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (536)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eq-d~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (536)
||||--+.-+-++|+| ++++++.....+ .....|.... -...--+.+...++++++++++++.+|.+|+++..++
T Consensus 1 l~iets~~~~s~al~~-~~~i~~~~~~~~-~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG 76 (323)
T PRK14878 1 LGIESTAHTLGVGIVK-EDKVLANVRDTY-VPEKGGIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPG 76 (323)
T ss_pred CEEecCCcccEEEEEE-CCEEEEEEEEec-ccCcCCcCccHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCC
Confidence 5788777778888887 455776655443 1123343321 2233445567888999999898889999999976544
No 99
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=71.99 E-value=12 Score=39.68 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccccccc
Q 009384 491 LATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVFYLSQ 528 (536)
Q Consensus 491 rAvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGgs~s~ 528 (536)
+-++|..+|.++..+-.+.. ....++-|+++||...+.
T Consensus 296 ~la~d~~~y~i~k~Ig~~~a~l~G~vDaivfTGGige~~ 334 (388)
T PF00871_consen 296 KLALDAFAYQIAKYIGAYAAVLEGGVDAIVFTGGIGENS 334 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-SEEEEEHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCEEEEccccccch
Confidence 36799999999998888765 445789999999985443
No 100
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=71.66 E-value=11 Score=38.21 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=38.1
Q ss_pred EEEEEccccceeEEEEcCC-C--CEEEEEEeeccccc---CCCccccCHHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEE
Q 009384 57 FLGVDVGTGSARAGLFDES-G--KLLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSACSLAN-VDGEEVKGVGF 129 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~-g--~i~~~~~~~~~~~~---~~g~~eqd~~~~~~~i~~~l~~~~~~~~-~~~~~I~aIgi 129 (536)
+.+||+||.++|..+++.+ + +++...+..+.... ..| ..+++ -.+.+++++++..+... ....+|.+++-
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g--~i~~e-~i~~~~~~l~~f~~~~~~~~v~~i~~vaT 78 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTG--RLSEE-AIERALEALKRFAELLRGFPVDEVRAVAT 78 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCC--CcCHH-HHHHHHHHHHHHHHHHHhCCCCeEEEEEc
Confidence 5689999999999999853 3 34444443333211 222 22333 33444455555443321 12245666655
Q ss_pred cC
Q 009384 130 AA 131 (536)
Q Consensus 130 s~ 131 (536)
++
T Consensus 79 sa 80 (300)
T TIGR03706 79 AA 80 (300)
T ss_pred HH
Confidence 44
No 101
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=70.88 E-value=11 Score=40.31 Aligned_cols=64 Identities=20% Similarity=0.165 Sum_probs=39.8
Q ss_pred EEccccceeEEEEc-CCCCEEEEEEeecccccCCCccccCHHHHHHH-HHHHHHHHHHHcCCC-C--CCEEEEEEcCC
Q 009384 60 VDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHA-ICAAVDSACSLANVD-G--EEVKGVGFAAT 132 (536)
Q Consensus 60 IDiGTtsiKa~l~d-~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~-i~~~l~~~~~~~~~~-~--~~I~aIgis~~ 132 (536)
+|+|+|.+|+.+|| ++++++..++..+|.. .+++... +.++++++.++.+.. . ..+.-++.|+-
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpTt---------~~dv~~G~~~~a~~~l~~~~~~~~~~~~~~~~~acSSA 69 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPIE---------SDHLAGGFFNKANEKLNEDLAGKELNSGEVAKKACSSA 69 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCccc---------hhhhhcchHHHHHHHHHHhcCCcccccccceEEEEccc
Confidence 59999999999999 5577888777766532 1345444 555666665554322 1 23344555554
No 102
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=70.88 E-value=9 Score=41.25 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=42.4
Q ss_pred CCeEEEEEccccceeEEEEcCCCC--EEEEE--EeecccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 009384 54 RSVFLGVDVGTGSARAGLFDESGK--LLGSA--SSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~--i~~~~--~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~ 118 (536)
...+++||+|+|+.|+.++...|. .+... ..+.|...-.| ..+++|+.|.+++...+++.+
T Consensus 85 ~G~~lalDLGGTn~Rv~~v~L~g~~~~~~~~~~~~~ip~~~m~g----t~~~Lfd~Ia~~l~~F~~~~~ 149 (474)
T KOG1369|consen 85 KGKFLALDLGGTNFRVLLVKLGGGRTSVRMYNKIYAIPEEIMQG----TGEELFDFIARCLADFLDKMG 149 (474)
T ss_pred CCCEEEEecCCCceEEEEEEecCCcccceeeeeeEecCHHHHcC----chHHHHHHHHHHHHHHHHHhc
Confidence 456899999999999999986554 22222 22233221122 578999999999999888754
No 103
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=70.69 E-value=14 Score=38.08 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=54.7
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeeccc-cc-CCCc-cccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQI-WK-EGDC-IEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~-~~-~~g~-~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
.+|||.---.-+-++|++.++ +++.....+-. .. ..|- -|.-...-.+.+..+++++++++++..++|.+|++|..
T Consensus 2 ~iLGIEtScDeT~vaIv~~~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~g 80 (342)
T COG0533 2 IILGIETSCDETGVAIVDEEK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAG 80 (342)
T ss_pred eEEEEEcccccceeEEEeccC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecC
Confidence 467887666666778888666 66544433321 22 2232 23345566778888999999999998899999999776
Q ss_pred CCeE
Q 009384 133 CSLV 136 (536)
Q Consensus 133 ~~~v 136 (536)
+|++
T Consensus 81 PGL~ 84 (342)
T COG0533 81 PGLG 84 (342)
T ss_pred CCch
Confidence 7654
No 104
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=70.48 E-value=7 Score=33.77 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=31.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCC
Q 009384 97 QSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (536)
Q Consensus 97 qd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (536)
-++++++++..+++.++++++++++++|.+|-||.+..
T Consensus 13 n~~e~I~~at~eLl~~i~~~N~l~~~dIvSi~FT~T~D 50 (118)
T PF07736_consen 13 NTPEEILEATRELLEEILERNELSPEDIVSIIFTVTPD 50 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEE-TT
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCCC
Confidence 46899999999999999999999999999999976543
No 105
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=70.24 E-value=10 Score=36.79 Aligned_cols=68 Identities=16% Similarity=0.279 Sum_probs=49.5
Q ss_pred eEEEEEccccceeEEEEcC-CCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-C
Q 009384 56 VFLGVDVGTGSARAGLFDE-SGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C 133 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~-~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~-~ 133 (536)
.+|+||-.|..+-++|++. +++++++.....+ ...-+.+...+++++.+++....++.+|+|+-. .
T Consensus 2 ~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~~~~------------r~hse~l~~~i~~ll~~~~~~~~dld~iav~~GPG 69 (220)
T COG1214 2 KILAIDTSTSALSVALYLADDGKVLAEHTEKLK------------RNHAERLMPMIDELLKEAGLSLQDLDAIAVAKGPG 69 (220)
T ss_pred cEEEEEcChhhhhhheeecCCCcEEEEEEEecc------------ccHHHHHHHHHHHHHHHcCCCHHHCCEEEEccCCC
Confidence 4899999999999888885 6788777666543 112233456677778887777789999999755 4
Q ss_pred Ce
Q 009384 134 SL 135 (536)
Q Consensus 134 ~~ 135 (536)
++
T Consensus 70 SF 71 (220)
T COG1214 70 SF 71 (220)
T ss_pred cc
Confidence 44
No 106
>PRK00976 hypothetical protein; Provisional
Probab=69.00 E-value=15 Score=37.69 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=36.2
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC-C-C
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA-T-C 133 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~-~-~ 133 (536)
+++|||=|||.+|.++.+.+......-.+. +.-..=...+.++ +..++.++|..|++|. | .
T Consensus 2 ~~~g~dhgt~~~~~~~~~~~~~~~f~~~r~---------------~~~~~~~~~~~~~--~~~~~~~~i~~~~~~ysmgd 64 (326)
T PRK00976 2 MFVGIDHGTTGIRFAIIEGGKKSIFKLPRT---------------EAKSMEKSALEEL--EKRVPLEDIELIAVTYSMGD 64 (326)
T ss_pred eEEeecCCCccEEEEEEcCCceeEEEeeHH---------------HhhhccHHHHHHH--hcCCChhheeEEEEeecccC
Confidence 589999999999999994333222221111 1100001223333 2345678999999985 6 4
Q ss_pred Ce
Q 009384 134 SL 135 (536)
Q Consensus 134 ~~ 135 (536)
++
T Consensus 65 ~~ 66 (326)
T PRK00976 65 GI 66 (326)
T ss_pred Ch
Confidence 43
No 107
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=68.76 E-value=14 Score=37.91 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=55.1
Q ss_pred EEEEEccccceeEEEEcCCCCEEEEEEeecccc--cCCCccccCH-HHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 009384 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIW--KEGDCIEQSS-TDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~--~~~g~~eqd~-~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (536)
+|||.-.-.-+-++|+|+.++++++....-... ..+|-...-+ +.--+.+..++++++.+++..+.++.+|+|+-.+
T Consensus 34 VLgIETSCDDTavaVVd~~~~~~~~~i~~~t~~~~~yGGI~P~~a~~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~gP 113 (405)
T KOG2707|consen 34 VLGIETSCDDTAVAVVDEFSHVLSSEIYSRTEIHRQYGGIIPTVAQLLHRENIPRLIQRALDAAGLSPKDLDAIAVTRGP 113 (405)
T ss_pred eeeEecccCcceeeeecccccccchhhhhhhHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHcCCCcccceeEEEecCC
Confidence 899987777788999999999887753211111 1334322122 2223456678888999899889999999997667
Q ss_pred CeEE
Q 009384 134 SLVA 137 (536)
Q Consensus 134 ~~v~ 137 (536)
|+.+
T Consensus 114 Gl~l 117 (405)
T KOG2707|consen 114 GLPL 117 (405)
T ss_pred Ccee
Confidence 6543
No 108
>PRK12440 acetate kinase; Reviewed
Probab=68.30 E-value=7.4 Score=41.01 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEecccccccc
Q 009384 491 LATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVFYLSQS 529 (536)
Q Consensus 491 rAvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGgs~s~~ 529 (536)
+-++|..+|.++..+-.+.. .+ .++-|+++||...+..
T Consensus 297 ~lA~d~f~yri~k~Ig~~~a~l~-gvDaiVFTgGIGen~~ 335 (397)
T PRK12440 297 TLAFEVFTYRVAKYIASYLAALD-SLDGIIFTGGIGENSL 335 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcH
Confidence 35788899999988877765 56 6899999999854443
No 109
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=66.80 E-value=13 Score=36.66 Aligned_cols=41 Identities=5% Similarity=-0.130 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccccccccc
Q 009384 490 YLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSR 530 (536)
Q Consensus 490 ~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~ 530 (536)
-.+++-|.++.++..++.+++....-..++++||.+..-++
T Consensus 188 qsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~~~~~ 228 (251)
T COG1521 188 QSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAKLLLD 228 (251)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchHhhhh
Confidence 34778888888888888888753345689999998765443
No 110
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=66.32 E-value=9.3 Score=32.94 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=33.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCC
Q 009384 97 QSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (536)
Q Consensus 97 qd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (536)
-+.++++++..+++.++++++++++++|.+|-||.+..
T Consensus 13 nt~e~I~~at~eLl~~i~~~N~l~~edivSv~FT~T~D 50 (117)
T cd02185 13 NTAEEILEATRELLEEIIERNNIKPEDIISVIFTVTPD 50 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCCc
Confidence 36899999999999999999999999999999987643
No 111
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=65.59 E-value=9.8 Score=32.81 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=33.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCC
Q 009384 97 QSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (536)
Q Consensus 97 qd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (536)
-+.++++++..+++.++++++++++++|.+|-||.+..
T Consensus 13 nt~e~I~~at~eLl~~ii~~N~l~~edivSv~FT~T~D 50 (117)
T TIGR01796 13 NEAEEIGEAVAELLTELMERNELTPEDLISVIFTVTED 50 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEecCc
Confidence 46899999999999999999999999999999986643
No 112
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=64.86 E-value=27 Score=38.29 Aligned_cols=74 Identities=14% Similarity=0.171 Sum_probs=43.6
Q ss_pred CCeEEEEEccccceeEEEEcC-CCC--EEEEEEeeccccc---CCCccccCHHHHHHHHHHHHHHH---HHHcCCCCCCE
Q 009384 54 RSVFLGVDVGTGSARAGLFDE-SGK--LLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSA---CSLANVDGEEV 124 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~-~g~--i~~~~~~~~~~~~---~~g~~eqd~~~~~~~i~~~l~~~---~~~~~~~~~~I 124 (536)
.+++.+|||||.|+|.+|++. +|. ++...+..+..-. ..|.. +++ -.+.+++++++. ++..+ ..+|
T Consensus 5 ~~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~L--s~e-~i~r~~~~L~~F~~~~~~~~--v~~i 79 (496)
T PRK11031 5 SSLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDNAL--SNE-AMERGWQCLRLFAERLQDIP--PSQI 79 (496)
T ss_pred CCEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCCCc--CHH-HHHHHHHHHHHHHHHHHhCC--CCeE
Confidence 367899999999999999984 453 3333333333211 23322 333 344555566554 44433 4578
Q ss_pred EEEEEcCC
Q 009384 125 KGVGFAAT 132 (536)
Q Consensus 125 ~aIgis~~ 132 (536)
.++|-++.
T Consensus 80 ~~vATsAv 87 (496)
T PRK11031 80 RVVATATL 87 (496)
T ss_pred EEEEeHHH
Confidence 88888763
No 113
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=62.81 E-value=50 Score=30.42 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=37.1
Q ss_pred eEEEEEccccceeEEEEcCCCCE---EEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 009384 56 VFLGVDVGTGSARAGLFDESGKL---LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i---~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgi 129 (536)
.+||||-|++++=.++++.+|+- +......++ +. .+..+=+..+.+.+.+++++. ++..++|
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~~~~~~~~G~i~t~----~~---~~~~~Rl~~I~~~l~~~i~~~-----~Pd~vai 67 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGRRLSYVASGVIRTP----SD---LDLPERLKQIYDGLSELIDEY-----QPDEVAI 67 (164)
T ss_pred EEEEEccccCceeEEEEEecCCeEEEEEeeEEECC----CC---CCHHHHHHHHHHHHHHHHHHh-----CCCEEEE
Confidence 48999999999999999976652 222222222 11 122222455566777777653 4455556
No 114
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=61.01 E-value=17 Score=35.86 Aligned_cols=32 Identities=19% Similarity=0.464 Sum_probs=22.9
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccc
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW 89 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~ 89 (536)
.++|||||+-++|++. .+|.......+-+|++
T Consensus 4 kilGiDIGGAntk~a~--~DG~~~~~d~~YlPMW 35 (330)
T COG1548 4 KILGIDIGGANTKIAS--SDGDNYKIDHIYLPMW 35 (330)
T ss_pred eEEEeeccCccchhhh--ccCCeeeeeEEEeccc
Confidence 3899999999999998 5676654333444543
No 115
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=60.61 E-value=7.6 Score=44.10 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=19.5
Q ss_pred CCCCeEEEEEccccceeEEEEcC
Q 009384 52 RSRSVFLGVDVGTGSARAGLFDE 74 (536)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~ 74 (536)
|....++|||+|||+.++++++.
T Consensus 1 ~~~~~~iGIDlGTt~s~va~~~~ 23 (653)
T PTZ00009 1 MTKGPAIGIDLGTTYSCVGVWKN 23 (653)
T ss_pred CCcccEEEEEeCcccEEEEEEeC
Confidence 55556899999999999999864
No 116
>PLN02920 pantothenate kinase 1
Probab=60.17 E-value=2.2e+02 Score=30.09 Aligned_cols=134 Identities=14% Similarity=0.109 Sum_probs=75.5
Q ss_pred eEEEEecccceeeeeeccccccCCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHH
Q 009384 351 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 430 (536)
Q Consensus 351 ~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~ 430 (536)
-+++++||...+..+.. ++.|-..+++.-||..+-=|...+. +...|+++.
T Consensus 167 yLLVNIGSGVSilkV~~-----------------~~~~~RVgGTsIGGGT~~GL~~LLt------------g~~sfdEll 217 (398)
T PLN02920 167 YLLVNIGSGVSMIKVDG-----------------DGKFERVSGTSVGGGTFWGLGKLLT------------KCKSFDELL 217 (398)
T ss_pred eEEEEcCCCEEEEEEeC-----------------CCcEEEEcccccchHhHHHHHHHHc------------CCCCHHHHH
Confidence 58889998765544332 1234444555555555443433332 345688777
Q ss_pred HHHHhhhhhcCCCCCCCCCCCeEEccccCCC-C--CCCCCCCCcEEEEc--CCC-----CCChhHHHHHHHHHHHHHHHH
Q 009384 431 GTLESMIHERNSPFVAALTEDIHVLPDFHGN-R--SPIADPKSKGIICG--MTL-----DSSEKQLALLYLATVQGIAYG 500 (536)
Q Consensus 431 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ge-r--~P~~d~~arg~f~G--l~~-----~~~~~~~~~~~rAvlEgia~~ 500 (536)
+++.+ .. ...-++ .+-..+|. . .|.-..++.++-+| ... +.+++|++ |+++--|++.
T Consensus 218 ~lA~~-Gd--------~~nvDl-lVgDIYGg~~y~~~gL~~d~iASsFGKv~~~~~~~~~~s~eDia---~SLL~mVs~n 284 (398)
T PLN02920 218 ELSHQ-GN--------NRVIDM-LVGDIYGGMDYSKIGLSSTTIASSFGKAISDNKELEDYKPEDVA---RSLLRMISNN 284 (398)
T ss_pred HHHhC-CC--------ccccCc-eeccccCCCCCCCCCCCccceeeccCcccccccccccCCHHHHH---HHHHHHHHHH
Confidence 77654 10 011133 34555552 1 12235566666667 322 23477864 5999999999
Q ss_pred HHHHHHHHHhCCCCccEEEEecccccc
Q 009384 501 TRHIVEHCNAHGHKVREHIFHSVFYLS 527 (536)
Q Consensus 501 ~r~~le~l~~~g~~~~~I~~~GGgs~s 527 (536)
+-++. .|......+++|++.|.....
T Consensus 285 IgqiA-~L~A~~~~ik~Ivf~G~fir~ 310 (398)
T PLN02920 285 IGQIS-YLNALRFGLKRIFFGGFFIRG 310 (398)
T ss_pred HHHHH-HHHHHHcCCCEEEEEeecccC
Confidence 88765 344334567799999886544
No 117
>PLN03184 chloroplast Hsp70; Provisional
Probab=59.62 E-value=13 Score=42.48 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=31.9
Q ss_pred CCCccccchhhhhhccCcchhccCCCCCCCCCCeEEEEEccccceeEEEEcC
Q 009384 23 SISPIYNTNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGTGSARAGLFDE 74 (536)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~lgIDiGTtsiKa~l~d~ 74 (536)
.++.-|+.|.--.-.|.+ ...+| |-+.....++|||+|||+.++++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~viGIDlGTt~s~va~~~~ 58 (673)
T PLN03184 10 TPTAAFLKMGKRRGNGAR-RRAGG--PLRVVAEKVVGIDLGTTNSAVAAMEG 58 (673)
T ss_pred CCCcchhhhhhhhccccc-cccCC--CccccCCCEEEEEeCcCcEEEEEEEC
Confidence 345557777666655554 33333 22222335899999999999999964
No 118
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=59.25 E-value=8.3 Score=43.53 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=30.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccccccccccccc
Q 009384 480 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTVRS 534 (536)
Q Consensus 480 ~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~~~ 534 (536)
.-++.++-.+...+++-+.-.++..++...-...+++.|+++||. |+.|.+++
T Consensus 292 ~itR~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGs--sriP~v~~ 344 (627)
T PRK00290 292 KLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGS--TRMPAVQE 344 (627)
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCc--CCChHHHH
Confidence 345777655555555555444444433322112357899999997 66666554
No 119
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=58.71 E-value=36 Score=30.78 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=34.2
Q ss_pred EEEEEccccceeEEEEcCCCCE---EEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 009384 57 FLGVDVGTGSARAGLFDESGKL---LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i---~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgi 129 (536)
+||||-|++++--++++.+++- +......++ ...+..+=+..+.+.+.+++++. ++..+++
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G~I~t~-------~~~~~~~Rl~~I~~~l~~li~~~-----~P~~vai 64 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYGTIKTS-------SKDSLPERLKEIYEELEELIEEY-----NPDEVAI 64 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEEEEE----------S--HHHHHHHHHHHHHHHHHHH-------SEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeCeEECC-------CCCCHHHHHHHHHHHHHHHHHhh-----CCCEEEe
Confidence 6899999999999999976533 333333332 11123344456677777777763 4555556
No 120
>PLN02902 pantothenate kinase
Probab=58.14 E-value=1.3e+02 Score=34.95 Aligned_cols=134 Identities=14% Similarity=0.137 Sum_probs=74.9
Q ss_pred eEEEEecccceeeeeeccccccCCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHH
Q 009384 351 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 430 (536)
Q Consensus 351 ~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~ 430 (536)
-+++++||...+..+.. ++.|--.++++-||..+-=|...+ .+...|+++-
T Consensus 216 yLLVNIGSGVSilkV~~-----------------~~~~~RVgGTsIGGGT~~GL~~LL------------tg~~sFdEll 266 (876)
T PLN02902 216 YLLVNIGSGVSMIKVDG-----------------DGKFERVSGTNVGGGTYWGLGRLL------------TKCKSFDELL 266 (876)
T ss_pred eEEEEcCCceEEEEEec-----------------CCcEEEecccccccHhHHHHHHHH------------cCCCCHHHHH
Confidence 58889998765544332 123444455555555543333332 2456788887
Q ss_pred HHHHhhhhhcCCCCCCCCCCCeEEccccCCC-CC--CCCCCCCcEEEEc--CC-----CCCChhHHHHHHHHHHHHHHHH
Q 009384 431 GTLESMIHERNSPFVAALTEDIHVLPDFHGN-RS--PIADPKSKGIICG--MT-----LDSSEKQLALLYLATVQGIAYG 500 (536)
Q Consensus 431 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ge-r~--P~~d~~arg~f~G--l~-----~~~~~~~~~~~~rAvlEgia~~ 500 (536)
+++.+= . ...-++ .+-..+|. .. +.-..++..+-+| .. .+.+++|++ |+++--|++.
T Consensus 267 ~LA~~G-d--------~~~vDl-lVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~~~~~~~s~eDia---rSLL~mIs~N 333 (876)
T PLN02902 267 ELSQRG-D--------NSAIDM-LVGDIYGGMDYSKIGLSASTIASSFGKVISENKELSDYRPEDIS---LSLLRMISYN 333 (876)
T ss_pred HHHhcC-C--------ccccCe-eeccccCCCCcCCCCCCcchhhhccCcccccccccccCCHHHHH---HHHHHHHHHH
Confidence 776540 0 011133 34555652 21 1234555556666 21 124577864 5999999999
Q ss_pred HHHHHHHHHhCCCCccEEEEecccccc
Q 009384 501 TRHIVEHCNAHGHKVREHIFHSVFYLS 527 (536)
Q Consensus 501 ~r~~le~l~~~g~~~~~I~~~GGgs~s 527 (536)
+-++.- |......+++|+++|..-..
T Consensus 334 IGqiA~-L~A~~~~ikrIvF~G~fIr~ 359 (876)
T PLN02902 334 IGQISY-LNALRFGLKRIFFGGFFIRG 359 (876)
T ss_pred HHHHHH-HHHHHcCCCEEEEecceecC
Confidence 987753 43333457799999987544
No 121
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=55.80 E-value=8.6 Score=37.82 Aligned_cols=48 Identities=10% Similarity=0.227 Sum_probs=33.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-EEEEeccccccccccccc
Q 009384 477 MTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVR-EHIFHSVFYLSQSRTVRS 534 (536)
Q Consensus 477 l~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~-~I~~~GGgs~s~~~~~~~ 534 (536)
+....+++++ ++++++++++.++.++..+ +++ .|+++||+ ++++.+++
T Consensus 173 l~~g~~~~di---~~~~~~~va~~i~~~~~~~-----~~~~~Vvl~GGv--a~n~~l~~ 221 (248)
T TIGR00241 173 LAAGVKKEDI---LAGVYESIAERVAEMLQRL-----KIEAPIVFTGGV--SKNKGLVK 221 (248)
T ss_pred HHCCCCHHHH---HHHHHHHHHHHHHHHHhhc-----CCCCCEEEECcc--ccCHHHHH
Confidence 4444567774 5699999999999866443 244 79999997 45555543
No 122
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=55.49 E-value=43 Score=29.54 Aligned_cols=21 Identities=38% Similarity=0.390 Sum_probs=18.4
Q ss_pred EEEEccccceeEEEEcCCCCE
Q 009384 58 LGVDVGTGSARAGLFDESGKL 78 (536)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~i 78 (536)
||||+|+..+=.++-|..+.+
T Consensus 1 laiD~G~kriGvA~~d~~~~~ 21 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDITGWT 21 (130)
T ss_pred CeEccCCCeEEEEEECCCCCE
Confidence 689999999999999987754
No 123
>CHL00094 dnaK heat shock protein 70
Probab=54.81 E-value=9.8 Score=42.91 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=18.6
Q ss_pred eEEEEEccccceeEEEEcCCCCE
Q 009384 56 VFLGVDVGTGSARAGLFDESGKL 78 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i 78 (536)
+++|||+|||+.++++++. |++
T Consensus 3 ~viGIDlGTt~s~va~~~~-g~~ 24 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEG-GKP 24 (621)
T ss_pred ceEEEEeCcccEEEEEEEC-CEE
Confidence 6899999999999999963 543
No 124
>PRK07157 acetate kinase; Provisional
Probab=54.28 E-value=1.4e+02 Score=31.57 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCccEEEEecccccccc
Q 009384 492 ATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVFYLSQS 529 (536)
Q Consensus 492 AvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGgs~s~~ 529 (536)
-++|..+|.++..+-.+.. .+..++-|+++||...+..
T Consensus 297 lA~d~f~yri~k~Ig~~~a~L~G~vDaiVFTgGIGen~~ 335 (400)
T PRK07157 297 FALDLYAQKIVDYLANYINKIGKKIDAIVFTAGVGENSA 335 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCcH
Confidence 5789999999998888765 5667899999999855443
No 125
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=54.25 E-value=67 Score=29.08 Aligned_cols=53 Identities=21% Similarity=0.376 Sum_probs=32.5
Q ss_pred EEEEEccccceeEEEEcCCC-CE--EEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHH
Q 009384 57 FLGVDVGTGSARAGLFDESG-KL--LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSL 116 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g-~i--~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~ 116 (536)
+||||-|++++=.++++.++ ++ +......++ + ..+..+=+..+.+.+.+++++
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~~~~~~~g~i~t~----~---~~~~~~rl~~I~~~l~~~i~~ 57 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRTS----S---DAPLPSRLKTIYDGLNEVIDQ 57 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCeEEEEEeeEEECC----C---CCCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999998544 32 222233332 1 112333355567777777765
No 126
>PRK12379 propionate/acetate kinase; Provisional
Probab=53.79 E-value=48 Score=35.08 Aligned_cols=37 Identities=11% Similarity=0.036 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCccEEEEecccccccc
Q 009384 492 ATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVFYLSQS 529 (536)
Q Consensus 492 AvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGgs~s~~ 529 (536)
-++|..+|.++..+-.+.. .+ .++-|+++||...+..
T Consensus 295 lA~d~f~yri~k~IGa~~a~L~-~vDaIVFTGGIGen~~ 332 (396)
T PRK12379 295 LAIKTFVHRIARHIAGHAASLH-RLDGIIFTGGIGENSS 332 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcH
Confidence 5789999999988877765 56 7899999999855544
No 127
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=53.64 E-value=12 Score=41.84 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.5
Q ss_pred CeEEEEEccccceeEEEEcCCC
Q 009384 55 SVFLGVDVGTGSARAGLFDESG 76 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g 76 (536)
+.++|||+|||+..+++++.++
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~ 26 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGG 26 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCC
Confidence 4689999999999999998664
No 128
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=53.53 E-value=19 Score=39.24 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=41.7
Q ss_pred CeEEEEEccccceeEEEEcCC-C--CEEEEEEeeccccc---CCCccccCHHHHHHHHHHHHHHHHHHc-CCCCCCEEEE
Q 009384 55 SVFLGVDVGTGSARAGLFDES-G--KLLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSACSLA-NVDGEEVKGV 127 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~-g--~i~~~~~~~~~~~~---~~g~~eqd~~~~~~~i~~~l~~~~~~~-~~~~~~I~aI 127 (536)
+.+.+||+||-|++.+|++.. | +++...+..+..-. ..|.. +++. .+...++++.+.+.+ +...++|..|
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~~~~~~~l~~~k~~vrLgegl~~~g~L--~~ea-i~R~~~aL~~f~e~~~~~~~~~v~~v 79 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEITPGSFQVLFREKRIVRLGEGLDATGNL--SEEA-IERALSALKRFAELLDGFGAEEVRVV 79 (492)
T ss_pred ceEEEEEecCCeEEEEEEeccCCccchhhhhhhheehhcCccccCCc--CHHH-HHHHHHHHHHHHHHHhhCCCCEEEEe
Confidence 457899999999999999954 4 33333333222111 22322 3333 344455565544332 1235678887
Q ss_pred EEcCC
Q 009384 128 GFAAT 132 (536)
Q Consensus 128 gis~~ 132 (536)
+-++.
T Consensus 80 ATsA~ 84 (492)
T COG0248 80 ATSAL 84 (492)
T ss_pred hhHHH
Confidence 77653
No 129
>PRK11678 putative chaperone; Provisional
Probab=52.90 E-value=10 Score=40.93 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=32.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCccEEEEecccccccccccccC
Q 009384 477 MTLDSSEKQLALLYLATVQGIAYGTRHIVEH-CNAHGHKVREHIFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 477 l~~~~~~~~~~~~~rAvlEgia~~~r~~le~-l~~~g~~~~~I~~~GGgs~s~~~~~~~~ 535 (536)
+...-+++++..+++..++-+ ..+++. +++.+..++.|+++||. |+.|.++++
T Consensus 365 ~~~~ItR~efe~ii~~~l~ri----~~~i~~~L~~a~~~~d~VvLvGGs--SriP~V~~~ 418 (450)
T PRK11678 365 LATEISQQGLEEAISQPLARI----LELVQLALDQAQVKPDVIYLTGGS--ARSPLIRAA 418 (450)
T ss_pred cceeeCHHHHHHHHHHHHHHH----HHHHHHHHHHcCCCCCEEEEcCcc--cchHHHHHH
Confidence 344556777665555554444 444433 33456778899999997 676666553
No 130
>PRK13410 molecular chaperone DnaK; Provisional
Probab=52.05 E-value=13 Score=42.36 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=18.7
Q ss_pred eEEEEEccccceeEEEEcCCCCE
Q 009384 56 VFLGVDVGTGSARAGLFDESGKL 78 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i 78 (536)
+++|||+|||+.++++++. |++
T Consensus 3 ~viGIDlGTt~s~va~~~~-g~~ 24 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEG-GKP 24 (668)
T ss_pred cEEEEEeCCCcEEEEEEEC-CeE
Confidence 5899999999999999974 543
No 131
>PRK13411 molecular chaperone DnaK; Provisional
Probab=52.00 E-value=12 Score=42.52 Aligned_cols=21 Identities=29% Similarity=0.656 Sum_probs=18.3
Q ss_pred eEEEEEccccceeEEEEcCCCC
Q 009384 56 VFLGVDVGTGSARAGLFDESGK 77 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~ 77 (536)
.++|||+|||+.++++++. |+
T Consensus 3 ~viGIDlGTt~s~va~~~~-g~ 23 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEG-GK 23 (653)
T ss_pred cEEEEEeCcccEEEEEEEC-CE
Confidence 5899999999999999964 54
No 132
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=50.38 E-value=74 Score=32.26 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=18.2
Q ss_pred CeEEEEEccccceeEEEEc-CCCCEEE
Q 009384 55 SVFLGVDVGTGSARAGLFD-ESGKLLG 80 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d-~~g~i~~ 80 (536)
...+| |||.|+.|.+|+. ..++...
T Consensus 7 p~Lvg-DIGGTnaRfaLv~~a~~~~~~ 32 (320)
T COG0837 7 PRLVG-DIGGTNARFALVEIAPAEPLQ 32 (320)
T ss_pred ceEEE-ecCCcceEEEEeccCCCCccc
Confidence 44556 9999999999987 4454443
No 133
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=50.13 E-value=37 Score=29.92 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=25.0
Q ss_pred EEEEEccccceeEEEEcCCCCEEEEEEeec
Q 009384 57 FLGVDVGTGSARAGLFDESGKLLGSASSPI 86 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~ 86 (536)
++|||+|-...-++++|.+|.+......+.
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~~~~~~~~~~ 30 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGEKLRRFKFEN 30 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCcEEEEEEEec
Confidence 689999999999999999997666655554
No 134
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=50.07 E-value=37 Score=38.70 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=44.3
Q ss_pred CCeEEEEEccccc-eeEEEEcCCCCEEEEEE-eecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 009384 54 RSVFLGVDVGTGS-ARAGLFDESGKLLGSAS-SPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (536)
Q Consensus 54 ~~~~lgIDiGTts-iKa~l~d~~g~i~~~~~-~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~ 131 (536)
.+.++|+|=|.-. +|.+++|..|+++.... .+++ |..-++...+.++.++.+.+ -++.+||..+
T Consensus 329 ~~~~lglDPg~rtG~k~Avvd~tGk~l~~~~Iyp~~-----------p~~~~~~~~~~l~~l~~~~~---Ve~iaIGngT 394 (780)
T COG2183 329 PKATLGLDPGFRTGCKVAVVDDTGKLLDTATIYPHP-----------PVNQSDKAEATLKDLIRKYK---VELIAIGNGT 394 (780)
T ss_pred CcceeecCCccccccEEEEEcCCCceeceeEEEcCC-----------CccchHHHHHHHHHHHHHhC---ceEEEEecCC
Confidence 3578999999744 99999999999997654 3332 22225555666777766644 4678888854
No 135
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=50.00 E-value=42 Score=30.40 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=19.8
Q ss_pred eEEEEEccc----cceeEEEEcCCCCEEEEEEe
Q 009384 56 VFLGVDVGT----GSARAGLFDESGKLLGSASS 84 (536)
Q Consensus 56 ~~lgIDiGT----tsiKa~l~d~~g~i~~~~~~ 84 (536)
-+++|-.|. ..++++++|++|+++...+.
T Consensus 6 rVla~~~g~g~~~~~~~~v~ld~~G~v~d~~~~ 38 (150)
T PF14639_consen 6 RVLALSWGSGDGDDAVFCVVLDENGEVLDHLKL 38 (150)
T ss_dssp -EEEEE-TT--TTS-EEEEEE-TTS-EEEEEEE
T ss_pred EEEEEEcCCCCCCCCEEEEEECCCCcEEEEEEE
Confidence 477777774 45899999999999987776
No 136
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=49.87 E-value=12 Score=41.89 Aligned_cols=20 Identities=20% Similarity=0.541 Sum_probs=0.0
Q ss_pred eEEEEEccccceeEEEEcCC
Q 009384 56 VFLGVDVGTGSARAGLFDES 75 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~ 75 (536)
.++|||+|||+.++++++..
T Consensus 1 ~viGIDlGtt~s~va~~~~g 20 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGG 20 (595)
T ss_pred CEEEEEeCcccEEEEEEECC
No 137
>PRK07058 acetate kinase; Provisional
Probab=48.21 E-value=25 Score=37.07 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEecccc
Q 009384 491 LATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVFY 525 (536)
Q Consensus 491 rAvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGgs 525 (536)
+-++|..+|.++..+-.+.. .| .++-|+++||..
T Consensus 295 ~lA~d~f~yri~k~IGa~~a~Lg-~vDaiVfTGGIg 329 (396)
T PRK07058 295 REALDLFALRIAGEIARLAATLG-GLDAVVFTAGIG 329 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccc
Confidence 36899999999998888765 54 689999999984
No 138
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=48.16 E-value=12 Score=41.68 Aligned_cols=51 Identities=8% Similarity=0.071 Sum_probs=28.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccccccccccccc
Q 009384 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTVRS 534 (536)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~~~ 534 (536)
++.++-.+..-+++.+.-.++.+++.......+++.|+++||+ |+.+-+++
T Consensus 296 tr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~--sr~p~v~~ 346 (602)
T PF00012_consen 296 TREEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGS--SRIPYVQE 346 (602)
T ss_dssp EHHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGG--GGSHHHHH
T ss_pred ccceecccccccccccccccccccccccccccccceeEEecCc--ccchhhhh
Confidence 4667655555555555444444443322122357899999997 66655543
No 139
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.04 E-value=53 Score=32.55 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=31.8
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHH
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICA 108 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~ 108 (536)
-.|.||+|+..+-++++|++ +|.+.-.+.++ ..+|+++-+.|..
T Consensus 228 palvVd~GngHttaalvded-RI~gv~EHHT~--------~Lspekled~I~r 271 (342)
T COG4012 228 PALVVDYGNGHTTAALVDED-RIVGVYEHHTI--------RLSPEKLEDQIIR 271 (342)
T ss_pred ceEEEEccCCceEEEEecCC-eEEEEeecccc--------cCCHHHHHHHHHH
Confidence 37899999999999999987 88876555443 2367665544433
No 140
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=47.65 E-value=17 Score=41.26 Aligned_cols=49 Identities=6% Similarity=0.087 Sum_probs=29.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CccEEEEeccccccccccccc
Q 009384 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KVREHIFHSVFYLSQSRTVRS 534 (536)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~---~~~~I~~~GGgs~s~~~~~~~ 534 (536)
-++.++-.+.+.+++-+.-.++.++ ++.|. +++.|+++||. ++-|-+++
T Consensus 320 ItR~efe~l~~~l~~r~~~~v~~~L---~~a~~~~~dId~VvLVGGs--sriP~V~~ 371 (657)
T PTZ00186 320 ISRSKFEGITQRLIERSIAPCKQCM---KDAGVELKEINDVVLVGGM--TRMPKVVE 371 (657)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHH---HHcCCChhhCCEEEEECCc--ccChHHHH
Confidence 3566665555566665544444443 33443 57899999997 66555554
No 141
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=46.43 E-value=14 Score=37.43 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEEccccceeEEEEcCCCCEE
Q 009384 57 FLGVDVGTGSARAGLFDESGKLL 79 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i~ 79 (536)
++|||=|||.+|.++.+.+++..
T Consensus 1 ~vGiDHGTtgi~f~~~~~~~~~~ 23 (326)
T TIGR03281 1 FVGIDHGTTGIRFAIIDGEKEPV 23 (326)
T ss_pred CccccCCCccEEEEEecCCcceE
Confidence 47999999999999999887654
No 142
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=45.72 E-value=18 Score=40.84 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=29.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccccccccccccc
Q 009384 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTVRS 534 (536)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~~~ 534 (536)
-++.++..+...+++.+.-.++..++...-....++.|+++||. |+.|-+++
T Consensus 295 itr~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGs--sriP~v~~ 346 (616)
T PRK05183 295 ITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGS--TRVPLVRE 346 (616)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCc--ccChHHHH
Confidence 45667655555555555444443333321112357899999997 66665554
No 143
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=45.10 E-value=34 Score=35.08 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=16.7
Q ss_pred EEEEccccceeEEEEcCCCC
Q 009384 58 LGVDVGTGSARAGLFDESGK 77 (536)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~ 77 (536)
|.-|||.|++|.++++.++.
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~ 20 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGG 20 (316)
T ss_dssp EEEEEETTEEEEEEEECTCG
T ss_pred CeEEeCcccEEEEEEEcCCC
Confidence 46799999999999996543
No 144
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=44.99 E-value=35 Score=30.29 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.4
Q ss_pred eEEEEEccccceeEEEEcCCCCE
Q 009384 56 VFLGVDVGTGSARAGLFDESGKL 78 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i 78 (536)
.+||||+|+..+=+++-|..+.+
T Consensus 2 riL~lD~G~kriGiAvsd~~~~~ 24 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLGII 24 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTTSS
T ss_pred eEEEEEeCCCeEEEEEecCCCCe
Confidence 38999999999999999987764
No 145
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=44.61 E-value=75 Score=32.97 Aligned_cols=135 Identities=13% Similarity=0.117 Sum_probs=70.2
Q ss_pred eEEEEecccceeeeeeccccccCCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHH
Q 009384 351 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 430 (536)
Q Consensus 351 ~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~ 430 (536)
-+++++||...+..+.. ++.|-..+++.-||..+-=|...+. +...|+++.
T Consensus 158 yllvniGsGvSi~~v~~-----------------~~~~~rvgGs~iGGgT~~GL~~llt------------~~~~~~e~~ 208 (341)
T PF03630_consen 158 YLLVNIGSGVSILKVEG-----------------PNQFERVGGSSIGGGTFWGLCSLLT------------GCKSFDEIL 208 (341)
T ss_dssp EEEEEESSSEEEEEEEE-----------------TTEEEEEEEES-SHHHHHHHHHHHH---------------SHHHHH
T ss_pred EEEEEcCCceEEEEEeC-----------------CCceEEEeccccchHhHHHHHHHhc------------CCCCHHHHH
Confidence 58889998755443322 2334444555556665544443331 234577777
Q ss_pred HHHHhhhhhcCCCCCCCCCCCeEEccccCCCC--CCCCCCCCcEEEEcCCCC-------CChhHHHHHHHHHHHHHHHHH
Q 009384 431 GTLESMIHERNSPFVAALTEDIHVLPDFHGNR--SPIADPKSKGIICGMTLD-------SSEKQLALLYLATVQGIAYGT 501 (536)
Q Consensus 431 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger--~P~~d~~arg~f~Gl~~~-------~~~~~~~~~~rAvlEgia~~~ 501 (536)
+++++ ... ..-++ .+-..+|.. .+.-.++..++-+|--.. .+++|+ .|+++.-|++.+
T Consensus 209 ~la~~-G~~--------~~vDl-lV~DIyg~~y~~~~L~~~~~AssFGk~~~~~~~~~~~~~~Di---a~sll~mv~~nI 275 (341)
T PF03630_consen 209 ELAKK-GDN--------SNVDL-LVGDIYGGDYNKIGLPGDLTASSFGKVQSKAKRKDSFSKEDI---AKSLLNMVSNNI 275 (341)
T ss_dssp HHHHH---G--------GGTSE-EHHHHHSS-BGGGTB-TTSEEETTCCGGSHHHH-CC--HHHH---HHHHHHHHHHHH
T ss_pred HHhcC-CCc--------cccCc-eeeeccCCCcccCCCCHHHHHhhhhhhhhcccccccCCHHHH---HHHHHHHHHHHH
Confidence 77654 110 11233 344454544 112345566665655432 246775 459999999998
Q ss_pred HHHHHHHHhCCCCccEEEEeccccccc
Q 009384 502 RHIVEHCNAHGHKVREHIFHSVFYLSQ 528 (536)
Q Consensus 502 r~~le~l~~~g~~~~~I~~~GGgs~s~ 528 (536)
-++.-...+ -..+++|+++|......
T Consensus 276 g~la~l~A~-~~~~~~I~f~G~~~~~~ 301 (341)
T PF03630_consen 276 GQLAYLHAK-IHGVKRIVFGGSFIRNN 301 (341)
T ss_dssp HHHHHHHHH-HHT--EEEEESGGGTSS
T ss_pred HHHHHHHHH-HcCCCEEEEEeccccCC
Confidence 877543333 23467999999875443
No 146
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=44.31 E-value=23 Score=35.88 Aligned_cols=29 Identities=48% Similarity=0.692 Sum_probs=20.9
Q ss_pred EccccceeEEEEcCCCCEEEEEEeecccc
Q 009384 61 DVGTGSARAGLFDESGKLLGSASSPIQIW 89 (536)
Q Consensus 61 DiGTtsiKa~l~d~~g~i~~~~~~~~~~~ 89 (536)
|=||||.|+-++|.+|+++.+.+.+..+.
T Consensus 1 DWGTSnlR~~l~~~~g~vl~~~~~~~Gi~ 29 (287)
T PF05035_consen 1 DWGTSNLRAWLMDEDGQVLAERSSPVGIL 29 (287)
T ss_dssp EE-SS-EEEEEE-CTTEEEEEEEES--CC
T ss_pred CCchhhhhhheecCCCcEEeeecCCcChh
Confidence 77999999999999999999888766543
No 147
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=43.90 E-value=17 Score=42.30 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.1
Q ss_pred CeEEEEEccccceeEEEEcCCCC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGK 77 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~ 77 (536)
+|+||+||||+||=-+|+|.+.+
T Consensus 1 ~y~LGLDiGt~SvGWAVv~~d~~ 23 (805)
T TIGR01865 1 EYILGLDIGIASVGWAIVEDDYK 23 (805)
T ss_pred CceeEEeecccceeEEEEecccc
Confidence 47899999999999999996643
No 148
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=42.56 E-value=19 Score=40.93 Aligned_cols=18 Identities=22% Similarity=0.586 Sum_probs=16.7
Q ss_pred eEEEEEccccceeEEEEc
Q 009384 56 VFLGVDVGTGSARAGLFD 73 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d 73 (536)
.++|||+|||+.++++++
T Consensus 42 ~viGIDlGTt~s~va~~~ 59 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIME 59 (663)
T ss_pred cEEEEEECcccEEEEEEe
Confidence 489999999999999986
No 149
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=42.12 E-value=45 Score=29.91 Aligned_cols=22 Identities=32% Similarity=0.367 Sum_probs=19.7
Q ss_pred CeEEEEEccccceeEEEEcCCC
Q 009384 55 SVFLGVDVGTGSARAGLFDESG 76 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g 76 (536)
+.+||||+||-.|=+++-|..+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 4589999999999999999766
No 150
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=41.49 E-value=48 Score=33.17 Aligned_cols=58 Identities=24% Similarity=0.317 Sum_probs=39.1
Q ss_pred EEEEccccceeEEEEc-CCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 009384 58 LGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (536)
Q Consensus 58 lgIDiGTtsiKa~l~d-~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgi 129 (536)
+|||-||.|+-+.-|| +.|+++.....+... ++.+|.-+. +.+++.-.+. ..|.+|.-
T Consensus 1 ~GIDpGT~smdvfgfdDEsg~vi~~~~I~rde------Vtk~p~iiv----~ii~e~~~e~----g~~daivg 59 (374)
T COG2441 1 IGIDPGTGSMDVFGFDDESGNVIVDVAIPRDE------VTKSPRIIV----DIIEEVQAEV----GGIDAIVG 59 (374)
T ss_pred CCcCCCCCceeEEEEecCCCCEEEEEecCHHH------hccCchHHH----HHHHHHhhhh----ccccceec
Confidence 5899999999998887 789999877776542 455676554 3455544432 34555544
No 151
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=41.40 E-value=23 Score=39.77 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=0.0
Q ss_pred eEEEEEccccceeEEEEcCCCCE
Q 009384 56 VFLGVDVGTGSARAGLFDESGKL 78 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i 78 (536)
.++|||+|||+..++++. +|++
T Consensus 20 ~viGIDlGTT~S~va~~~-~~~~ 41 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIAT-NRKV 41 (595)
T ss_pred eEEEEEcCcccEEEEEEe-CCee
No 152
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=41.12 E-value=76 Score=30.18 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=16.2
Q ss_pred EEEEEccccceeEEEEcCC
Q 009384 57 FLGVDVGTGSARAGLFDES 75 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~ 75 (536)
+|.||+|-|++|.+++|.+
T Consensus 1 ~L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEEE-SSEEEEEEEETT
T ss_pred CEEEEECCCeEEEEEEECC
Confidence 5789999999999999865
No 153
>PRK12397 propionate kinase; Reviewed
Probab=40.65 E-value=37 Score=35.95 Aligned_cols=37 Identities=8% Similarity=-0.069 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccEEEEecccccc
Q 009384 491 LATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLS 527 (536)
Q Consensus 491 rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s 527 (536)
+-++|..+|.++..+-.+...-..++-|+++||..-.
T Consensus 298 ~lA~d~f~yri~k~IGa~~a~lggvDaiVFTGGIGEn 334 (404)
T PRK12397 298 KLALTLFAERIRATIGSYIMQMGGLDALVFTGGIGEN 334 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCchhhC
Confidence 3578888999988887776532258899999998433
No 154
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=39.66 E-value=52 Score=33.95 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=37.5
Q ss_pred EEEccccceeEEEEcCCC---CEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 59 GVDVGTGSARAGLFDESG---KLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 59 gIDiGTtsiKa~l~d~~g---~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
|||||+.++|++-++.++ ++......++|.-. ..| ...|++.+- +.|++++++.+.. .+-..+++.+.
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p~~~i~~g-~i~d~~~l~----~~L~~~~~~~~~~-~k~v~~aip~~ 72 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLPPGAISDG-EIVDPEALA----EALKELLKENKIK-GKKVVLAIPGS 72 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEEEEEEE--TTSEETT-EES-HHHHH----HHHHHHHHHHT-----EEEEEE-GG
T ss_pred CeecCCCeEEEEEEEEcCCccEEEEEEEEECCCCCccCC-CcCCHHHHH----HHHHHHHHHcCCC-CCeEEEEeCCC
Confidence 899999999999998654 34455666666433 222 334676655 4566666655543 34455777544
No 155
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=36.99 E-value=26 Score=35.97 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=16.3
Q ss_pred EEEEccccceeEEEEcCCCCEE
Q 009384 58 LGVDVGTGSARAGLFDESGKLL 79 (536)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~i~ 79 (536)
+|||+||++++++.. .+|.++
T Consensus 5 ~giDlGt~~s~i~~~-~~~~~~ 25 (333)
T TIGR00904 5 IGIDLGTANTLVYVK-GRGIVL 25 (333)
T ss_pred eEEecCcceEEEEEC-CCCEEE
Confidence 899999999997764 455444
No 156
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=36.27 E-value=24 Score=39.61 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=31.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecccccccccccccC
Q 009384 480 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 480 ~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~~~~ 535 (536)
.-++.++..+..-+++.+.-.++..++...-...+++.|+++||+ |+.|.++++
T Consensus 278 ~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGs--sriP~V~~~ 331 (599)
T TIGR01991 278 KLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGS--TRMPLVRRA 331 (599)
T ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCc--CCChHHHHH
Confidence 335777665555666655544444443321112357899999997 666665543
No 157
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=36.19 E-value=1e+02 Score=33.30 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=45.9
Q ss_pred CCCeEEEEEccccceeEEEEc---CCCC-EEEEEEeeccccc-CCCc--cccCHHHHHHHHHHHHHHHHHHc
Q 009384 53 SRSVFLGVDVGTGSARAGLFD---ESGK-LLGSASSPIQIWK-EGDC--IEQSSTDIWHAICAAVDSACSLA 117 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d---~~g~-i~~~~~~~~~~~~-~~g~--~eqd~~~~~~~i~~~l~~~~~~~ 117 (536)
..+|-|.||.|+|..|.-||. ++|+ +.......+.... .||- ...+|+..-..+..+++-+.+..
T Consensus 7 ~~kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~nP~~a~~~l~pLlefA~~~I 78 (501)
T KOG1386|consen 7 NLKYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFADNPEGASVYLTPLLEFAKEHI 78 (501)
T ss_pred cceEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhccChhhhHHHHHHHHHHHHhhC
Confidence 347999999999999999986 5677 3444444443333 6663 55789888888777777665543
No 158
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=33.74 E-value=69 Score=33.88 Aligned_cols=65 Identities=14% Similarity=0.220 Sum_probs=40.4
Q ss_pred CCCeEEEEEccccceeEEEEcCCCCEEEEE-Eeeccccc--CCCc--cccCHHHHHHHHHHHHHHHHHHc
Q 009384 53 SRSVFLGVDVGTGSARAGLFDESGKLLGSA-SSPIQIWK--EGDC--IEQSSTDIWHAICAAVDSACSLA 117 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~-~~~~~~~~--~~g~--~eqd~~~~~~~i~~~l~~~~~~~ 117 (536)
...|.+-||.|+|+.|+-||-.+-...... ........ +||- ..-||++.-+.+..+++.+.+..
T Consensus 65 ~~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~~v 134 (453)
T KOG1385|consen 65 KRQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFADDPEEAANSLRPLLDVAEAFV 134 (453)
T ss_pred ceEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccCCChHHHHHhHHHHHHHHHhhC
Confidence 357999999999999999987543311000 00111111 5553 45688888887777777665543
No 159
>PRK13322 pantothenate kinase; Reviewed
Probab=33.27 E-value=36 Score=33.53 Aligned_cols=37 Identities=8% Similarity=-0.159 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEecccccc
Q 009384 490 YLATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVFYLS 527 (536)
Q Consensus 490 ~rAvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGgs~s 527 (536)
...++.|++..+..+++.+++ .+.+ -.|+++||.+..
T Consensus 182 ~sG~~~~~~~~i~~~i~~~~~~~~~~-~~vilTGG~a~~ 219 (246)
T PRK13322 182 ERGCLLMLRGFIESQLEQARELWGPD-FEIFLTGGDAPL 219 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCHHH
Confidence 347777777777777777765 3433 379999998654
No 160
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=32.61 E-value=64 Score=34.25 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCccEEEEecccccccccccc
Q 009384 492 ATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVFYLSQSRTVR 533 (536)
Q Consensus 492 AvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGgs~s~~~~~~ 533 (536)
-++|..+|.++..+-.+.. .+..++-|+++||.. =.|..+|
T Consensus 304 lA~~~f~yri~k~Iga~~a~L~G~vDaiVFTGGIG-Ens~~vr 345 (404)
T TIGR00016 304 LAIKMYVHRIAKYIGSYIASLEGNLDAIVFTGGIG-ENAATVR 345 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCccc-cCCHHHH
Confidence 5889999999988887765 566789999999984 2344443
No 161
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=32.49 E-value=32 Score=35.38 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=27.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHh-CC-CCcc-EEEEeccccc
Q 009384 482 SEKQLALLYLATVQGIAYGTRHIVEHCNA-HG-HKVR-EHIFHSVFYL 526 (536)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~le~l~~-~g-~~~~-~I~~~GGgs~ 526 (536)
+++++..++...++.+.-.++..++.... .. ..++ .|+++||++.
T Consensus 240 ~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ 287 (336)
T PRK13928 240 TSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGAL 287 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccc
Confidence 45666656667777777666666665431 11 1244 6999999743
No 162
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=32.46 E-value=1.2e+02 Score=30.07 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=33.9
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHH
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAA 109 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~ 109 (536)
=+++||+|.+.+-++++ .+++|.+.-.+.+. ..|++.+++-+.+.
T Consensus 168 ~~~~vniGN~HTlaa~v-~~~rI~GvfEHHT~--------~l~~~kL~~~l~~l 212 (254)
T PF08735_consen 168 GIIVVNIGNGHTLAALV-KDGRIYGVFEHHTG--------MLTPEKLEEYLERL 212 (254)
T ss_pred CeEEEEeCCccEEEEEE-eCCEEEEEEecccC--------CCCHHHHHHHHHHH
Confidence 47999999999999999 67888876655554 34788777654443
No 163
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=30.28 E-value=49 Score=26.22 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=21.1
Q ss_pred CCHHHHHHcCCCCcccccccccCccccCCCCcccCCccHHHHHHcCCCCCC
Q 009384 263 WDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGT 313 (536)
Q Consensus 263 W~~~ll~~~Gi~~~~~~~~p~l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~ 313 (536)
--+++|+.+++.+..+ |+|. .++.+|+.+|+.+|-
T Consensus 19 E~~~lL~~y~i~~~qL---P~I~-------------~~DPv~r~~g~k~Gd 53 (74)
T PF01191_consen 19 EKKELLKKYNIKPEQL---PKIL-------------SSDPVARYLGAKPGD 53 (74)
T ss_dssp HHHHHHHHTT--TTCS---SEEE-------------TTSHHHHHTT--TTS
T ss_pred HHHHHHHHhCCChhhC---Cccc-------------ccChhhhhcCCCCCC
Confidence 3457899999987655 6543 466777888877664
No 164
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=30.05 E-value=1.4e+02 Score=29.01 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=41.2
Q ss_pred CCCCEEEEEEeecccccCCCccccC-HHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 009384 74 ESGKLLGSASSPIQIWKEGDCIEQS-STDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (536)
Q Consensus 74 ~~g~i~~~~~~~~~~~~~~g~~eqd-~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (536)
.+|++++..+..|-.-+..|+...| +..-...+..++++.++++++...+|..|+.+-.+
T Consensus 20 ~~~~iLaN~R~TYitPPG~GFlP~~TA~HHr~~il~Lv~~al~ea~v~~~diD~icyTKGP 80 (336)
T KOG2708|consen 20 RDGKILANPRHTYITPPGEGFLPRDTARHHRAWILGLVKQALEEAGVTSDDIDCICYTKGP 80 (336)
T ss_pred ecceeecCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEcCCC
Confidence 4588888766655322234444433 34455667888999999999999999999996443
No 165
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=29.13 E-value=52 Score=33.88 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=11.1
Q ss_pred EEEEEcccccee
Q 009384 57 FLGVDVGTGSAR 68 (536)
Q Consensus 57 ~lgIDiGTtsiK 68 (536)
.+|||+||++++
T Consensus 6 ~~giDlGt~~~~ 17 (335)
T PRK13929 6 EIGIDLGTANIL 17 (335)
T ss_pred eEEEEcccccEE
Confidence 589999999997
No 166
>PRK11678 putative chaperone; Provisional
Probab=28.89 E-value=77 Score=34.25 Aligned_cols=20 Identities=35% Similarity=0.748 Sum_probs=17.5
Q ss_pred EEEEEccccceeEEEEcCCCC
Q 009384 57 FLGVDVGTGSARAGLFDESGK 77 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~ 77 (536)
++|||+|||+.-+++++ +|+
T Consensus 2 ~iGID~GTtNs~va~~~-~~~ 21 (450)
T PRK11678 2 FIGFDYGTANCSVAVMR-DGK 21 (450)
T ss_pred eEEEecCccceeeEEee-CCc
Confidence 68999999999999997 454
No 167
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=27.95 E-value=3.1e+02 Score=26.33 Aligned_cols=23 Identities=39% Similarity=0.715 Sum_probs=16.8
Q ss_pred EEEEEEcC-CCCe--EEEcCCCCeee
Q 009384 124 VKGVGFAA-TCSL--VAVDADGSPVS 146 (536)
Q Consensus 124 I~aIgis~-~~~~--v~vD~~G~pl~ 146 (536)
-.-+|++- ++++ +.+|++|+|++
T Consensus 29 k~~vGVDLGT~~iV~~vlD~d~~Pva 54 (277)
T COG4820 29 KLWVGVDLGTCDIVSMVLDRDGQPVA 54 (277)
T ss_pred ceEEEeecccceEEEEEEcCCCCeEE
Confidence 45578874 4665 47899999994
No 168
>COG4401 AroH Chorismate mutase [Amino acid transport and metabolism]
Probab=27.90 E-value=1.1e+02 Score=26.14 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCC
Q 009384 98 SSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (536)
Q Consensus 98 d~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (536)
.++++.++.+++++++.+++-.+++++..+-+|.+..
T Consensus 16 t~eeI~~at~eLl~~i~~~N~~~pedv~sv~~svT~D 52 (125)
T COG4401 16 TEEEILDATKELLEEIEEENITDPEDVVSVILSVTED 52 (125)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCChhheeeEEEEeccc
Confidence 5789999999999999998878899999999976543
No 169
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=27.31 E-value=1.1e+02 Score=32.17 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=40.5
Q ss_pred CeEEEEEcccc--ceeEEEEcCCC---CEEEEEEeecccc------c--CCCccccCH-------HHHHHHHHHHHHHHH
Q 009384 55 SVFLGVDVGTG--SARAGLFDESG---KLLGSASSPIQIW------K--EGDCIEQSS-------TDIWHAICAAVDSAC 114 (536)
Q Consensus 55 ~~~lgIDiGTt--siKa~l~d~~g---~i~~~~~~~~~~~------~--~~g~~eqd~-------~~~~~~i~~~l~~~~ 114 (536)
+++||+=-||| ++=+++++.++ +++...+.+||.. . .+... ++ .++=+...+++++++
T Consensus 1 ~~~iGlMSGTSlDGiD~alv~~~~~~~~~l~~~~~pyp~~lr~~l~~~~~~~~~--~~~~~~~l~~~lg~~~a~av~~~l 78 (364)
T PF03702_consen 1 QLVIGLMSGTSLDGIDAALVEFDGWRIELLAFHSFPYPSELRERLLALSRPAAS--SLDELCELDRELGELFADAVNQFL 78 (364)
T ss_dssp -EEEEEEE-TT-SEEEEEEEEESSSSEEEEEEEEEE--HHHHHHHHHCCSTTCS--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeccCCHHhhhheeEEEECCceEEeeeEeecCCHHHHHHHHHhhccCCC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777776 56678887553 5556666676521 0 12111 11 122234556777788
Q ss_pred HHcCCCCCCEEEEEE
Q 009384 115 SLANVDGEEVKGVGF 129 (536)
Q Consensus 115 ~~~~~~~~~I~aIgi 129 (536)
++.++++++|..||.
T Consensus 79 ~~~~i~~~~I~~Igs 93 (364)
T PF03702_consen 79 KKNGISPSDIDLIGS 93 (364)
T ss_dssp HHCT--GGGEEEEEE
T ss_pred HHcCCCcccccEEEe
Confidence 888877788888888
No 170
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=26.84 E-value=54 Score=26.33 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=23.3
Q ss_pred HHHHHHcCCCCcccccccccCccccCCCCcccCCccHHHHHHcCCCCCC
Q 009384 265 DEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGT 313 (536)
Q Consensus 265 ~~ll~~~Gi~~~~~~~~p~l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~ 313 (536)
+++|+.+++.+..+ |+|- .++.+|+.+|+..|-
T Consensus 24 ~~lL~~y~i~~~qL---P~I~-------------~~DPv~r~~g~k~Gd 56 (79)
T PRK09570 24 KKLLKEYGIKPEQL---PKIK-------------ASDPVVKAIGAKPGD 56 (79)
T ss_pred HHHHHHcCCCHHHC---Ccee-------------ccChhhhhcCCCCCC
Confidence 46899999988655 6543 466677778887664
No 171
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=26.82 E-value=2.1e+02 Score=29.98 Aligned_cols=40 Identities=8% Similarity=-0.090 Sum_probs=25.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecccccc
Q 009384 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLS 527 (536)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s 527 (536)
+++|+ .+-+.|=.|..+.+.++.+. .++++|+++|||+++
T Consensus 258 ~~~D~---~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N 297 (364)
T PF03702_consen 258 SPEDI---LATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARN 297 (364)
T ss_dssp -HHHH---HHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-
T ss_pred ChHHH---HHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCC
Confidence 36774 45777777766666665543 347899999998543
No 172
>PRK13328 pantothenate kinase; Reviewed
Probab=26.39 E-value=67 Score=31.83 Aligned_cols=37 Identities=5% Similarity=-0.184 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCccEEEEeccccccc
Q 009384 491 LATVQGIAYGTRHIVEHCNAH-GHKVREHIFHSVFYLSQ 528 (536)
Q Consensus 491 rAvlEgia~~~r~~le~l~~~-g~~~~~I~~~GGgs~s~ 528 (536)
..++-|.+..+..+++.+++. +.+ -.|+++||.+..-
T Consensus 191 sG~~~~~~~~i~~~i~~~~~~~~~~-~~vi~TGGda~~l 228 (255)
T PRK13328 191 AGCLAAQAGLIERAWRDLAARWQAP-VRLVLSGGAADAV 228 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCHHHH
Confidence 466777777777777777653 433 4799999986653
No 173
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=26.22 E-value=2.6e+02 Score=25.54 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=37.1
Q ss_pred EEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 009384 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgi 129 (536)
+||||=|+..+=-++++.+++-+. ...+.....+. ++..+=+..|.+.+.+++++ .++..++|
T Consensus 1 ILGIDPGl~~tG~gvi~~~~~~~~--~v~~G~I~t~~---~~~~~RL~~I~~~l~~~i~~-----y~P~~~ai 63 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQVGRQLS--YLGSGCIRTKV---DDLPSRLKLIYAGVTEIITQ-----FQPNYFAI 63 (156)
T ss_pred CEeECcccccccEEEEEecCCeEE--EEEeeEEECCC---CCHHHHHHHHHHHHHHHHHH-----hCCCEEEE
Confidence 489999999999999996554321 11222111111 23444455677777777765 34445666
No 174
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=24.91 E-value=50 Score=33.81 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=27.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-CCccE-EEEecccccccccccc
Q 009384 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAH-G-HKVRE-HIFHSVFYLSQSRTVR 533 (536)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~le~l~~~-g-~~~~~-I~~~GGgs~s~~~~~~ 533 (536)
+++++..++...++.+.-.++..++..... . ..+++ |+++||++ +-+.++
T Consensus 245 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s--~ipg~~ 297 (335)
T PRK13930 245 SSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGA--LLRGLD 297 (335)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchh--cchhHH
Confidence 345555555566666666666666543211 1 11244 99999974 444443
No 175
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=24.51 E-value=2.3e+02 Score=23.49 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=33.1
Q ss_pred EEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC--EEEEEE
Q 009384 69 AGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEE--VKGVGF 129 (536)
Q Consensus 69 a~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~--I~aIgi 129 (536)
+++++.+|+++-..+..-..+. ..|..+.+ +... ..++|++.++.|+.... +.-++.
T Consensus 5 ~~v~~~~~~vLl~~r~~~~~w~~PgG~ve~~-Es~~---~aa~REl~EEtGl~~~~~~~~~~~~ 64 (118)
T cd04690 5 ALILVRDGRVLLVRKRGTDVFYLPGGKIEAG-ETPL---QALIRELSEELGLDLDPDSLEYLGT 64 (118)
T ss_pred EEEEecCCeEEEEEECCCCcEECCCCccCCC-CCHH---HHHHHHHHHHHCCccChhheEEEEE
Confidence 5667777887765544333344 56777654 2233 24577888888865444 444443
No 176
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=23.78 E-value=74 Score=25.37 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=22.3
Q ss_pred HHHHHHcCCCCcccccccccCccccCCCCcccCCccHHHHHHcCCCCCC
Q 009384 265 DEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGT 313 (536)
Q Consensus 265 ~~ll~~~Gi~~~~~~~~p~l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~ 313 (536)
+++|+.++|.+..| |+|- .++.+|+.+|...|=
T Consensus 27 ~~vLk~l~i~~~qL---PkI~-------------~~DPva~~lgak~Gd 59 (80)
T COG2012 27 KEVLKELGIEPEQL---PKIK-------------ASDPVAKALGAKPGD 59 (80)
T ss_pred HHHHHHhCCCHHHC---Cccc-------------ccChhHHHccCCCCc
Confidence 47899999998766 6543 355566677765553
No 177
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=23.38 E-value=5.6e+02 Score=23.18 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=32.1
Q ss_pred eEEEEEccccc-----eeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 009384 56 VFLGVDVGTGS-----ARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV 119 (536)
Q Consensus 56 ~~lgIDiGTts-----iKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~ 119 (536)
-+|.||+.||+ +--++++ ++.++...-...+. .-++-+=-..+.+.|+.++++.+.
T Consensus 3 ~~LslD~STs~~~~~gTG~A~~~-~~~~~~~si~~~~k-------~Ks~~ER~k~ias~Lk~ii~~~d~ 63 (159)
T PF07066_consen 3 KVLSLDFSTSSKKGEGTGWAFFK-GSDLVVGSIKAKHK-------SKSFFERAKSIASELKTIIQKYDL 63 (159)
T ss_pred eeEEEEEecccCCCCCceeEEec-CCeEEEeeeeecCc-------ccCHHHHHHHHHHHHHHHHHHhCC
Confidence 48999999998 6667876 44444333222220 113333334455667777776553
No 178
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=23.15 E-value=55 Score=33.76 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=15.9
Q ss_pred EEEEEccccceeEEEEcCCCCEEEE
Q 009384 57 FLGVDVGTGSARAGLFDESGKLLGS 81 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i~~~ 81 (536)
-+|||+||+++++..- .+|.++.+
T Consensus 3 ~igIDLGT~~t~i~~~-~~Giv~~e 26 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVK-GKGIVLNE 26 (326)
T ss_dssp EEEEEE-SSEEEEEET-TTEEEEEE
T ss_pred ceEEecCcccEEEEEC-CCCEEEec
Confidence 5899999999987443 35555544
No 179
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=23.03 E-value=88 Score=35.16 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=16.2
Q ss_pred EEEEEccccceeEEEEcC
Q 009384 57 FLGVDVGTGSARAGLFDE 74 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~ 74 (536)
++|||+|||+.++++++.
T Consensus 1 ~iGIDlGTtns~va~~~~ 18 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRS 18 (599)
T ss_pred CEEEEEccccEEEEEEEC
Confidence 489999999999999974
No 180
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=22.84 E-value=1.5e+02 Score=31.50 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=21.6
Q ss_pred EEEEEccccceeEEEEcC-C-CCEEEEEE
Q 009384 57 FLGVDVGTGSARAGLFDE-S-GKLLGSAS 83 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~-~-g~i~~~~~ 83 (536)
+|.|..|+||+|..|||. + .+++.+..
T Consensus 6 iLvlN~GSSSlKf~lf~~~~~~~~l~~G~ 34 (404)
T TIGR00016 6 ILVINAGSSSLKFALFDYTNGETVLLSGL 34 (404)
T ss_pred EEEEECChHhheEEEEecCCCCceEEEEE
Confidence 999999999999999995 3 45555443
No 181
>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]
Probab=22.83 E-value=68 Score=36.71 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=19.2
Q ss_pred CCCCeEEEEEccccceeEEEEcC
Q 009384 52 RSRSVFLGVDVGTGSARAGLFDE 74 (536)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~ 74 (536)
|...|+||+|||+.|+-=+++..
T Consensus 1 ~~~~yilglDIGi~SVGWAvve~ 23 (1088)
T COG3513 1 MKKAYILGLDIGINSVGWAVVED 23 (1088)
T ss_pred CCcceEEEeeccccceeeEEeec
Confidence 55679999999999998777753
No 182
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=22.45 E-value=64 Score=33.80 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=22.7
Q ss_pred eEEEEEccccceeEEEEcC-CCCEEEEEE
Q 009384 56 VFLGVDVGTGSARAGLFDE-SGKLLGSAS 83 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~-~g~i~~~~~ 83 (536)
.+|.|..|+||+|..|||. +++++.+.-
T Consensus 2 ~iLviN~GSSSlKf~l~~~~~~~~~~~Gl 30 (396)
T COG0282 2 KILVINAGSSSLKFQLFDMPELEVLASGL 30 (396)
T ss_pred eEEEEecCcchheeeEeccCcccchhhhh
Confidence 4799999999999999994 566666543
No 183
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=22.34 E-value=2.2e+02 Score=29.93 Aligned_cols=75 Identities=23% Similarity=0.334 Sum_probs=45.1
Q ss_pred eEEEEEcccc--ceeEEEEcCCC-----CEEEEEEeecccc------c--CCCccccCHH-------HHHHHHHHHHHHH
Q 009384 56 VFLGVDVGTG--SARAGLFDESG-----KLLGSASSPIQIW------K--EGDCIEQSST-------DIWHAICAAVDSA 113 (536)
Q Consensus 56 ~~lgIDiGTt--siKa~l~d~~g-----~i~~~~~~~~~~~------~--~~g~~eqd~~-------~~~~~i~~~l~~~ 113 (536)
++||+=-||| ++=+++++.+| +++...+.+||.. . .+... +++ ++=+...++++++
T Consensus 3 ~~iGlMSGTSlDGiD~alv~~~g~~~~~~~~~~~~~py~~~lr~~l~~~~~~~~~--~~~~l~~l~~~lg~~~a~av~~~ 80 (365)
T PRK09585 3 RYIGLMSGTSLDGVDAALVEIDGEGTKVELLASATVPYPDELRAALLALLQGGAD--ELERLAELDTALGRLFAEAVNAL 80 (365)
T ss_pred eEEEeccccChhhhhEEEEEEeCCCcceEEeeeeEeeCCHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666665 45567777544 2455556676521 1 11111 122 2334456778888
Q ss_pred HHHcCCCCCCEEEEEEcCC
Q 009384 114 CSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 114 ~~~~~~~~~~I~aIgis~~ 132 (536)
++++++++.+|..||..+|
T Consensus 81 ~~~~~l~~~~id~IgsHGQ 99 (365)
T PRK09585 81 LAEAGLSPEDIDAIGSHGQ 99 (365)
T ss_pred HHHcCCCccCccEEEeCCc
Confidence 8888988899999999543
No 184
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=21.99 E-value=2.7e+02 Score=23.13 Aligned_cols=60 Identities=20% Similarity=0.153 Sum_probs=35.6
Q ss_pred ceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCC-CEEEEEE
Q 009384 66 SARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGE-EVKGVGF 129 (536)
Q Consensus 66 siKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~-~I~aIgi 129 (536)
++.++++|.+|+++-..+...+.+. ..|..+.+- ... ..+.|++.++.|+... .+.-+++
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~~~~w~~PgG~ve~gE-t~~---~aa~REl~EEtG~~~~~~~~~~~~ 63 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTYGPGWYLPGGGLERGE-TFA---EAARRELLEELGIRLAVVAELLGV 63 (120)
T ss_pred ceEEEEECCCCeEEEEEECCCCcEeCCCCcCCCCC-CHH---HHHHHHHHHHHCCccccccceEEE
Confidence 4678899998988776554334343 556665432 222 2457788888886554 3333333
No 185
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=21.93 E-value=1e+02 Score=34.76 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.6
Q ss_pred CeEEEEEccccceeEEEEcC
Q 009384 55 SVFLGVDVGTGSARAGLFDE 74 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~ 74 (536)
.+++|||+|||+.++++++.
T Consensus 19 ~~~iGIDlGTt~s~va~~~~ 38 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRS 38 (616)
T ss_pred CeEEEEEeccccEEEEEEEC
Confidence 47999999999999999853
No 186
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=21.75 E-value=96 Score=35.03 Aligned_cols=21 Identities=24% Similarity=0.632 Sum_probs=18.2
Q ss_pred eEEEEEccccceeEEEEcCCCC
Q 009384 56 VFLGVDVGTGSARAGLFDESGK 77 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~ 77 (536)
.++|||+|||+.++++++. |+
T Consensus 3 ~viGIDlGTt~s~va~~~~-g~ 23 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEG-GE 23 (627)
T ss_pred cEEEEEeCcccEEEEEEEC-CE
Confidence 5899999999999999973 43
No 187
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=21.59 E-value=1.7e+02 Score=26.36 Aligned_cols=24 Identities=17% Similarity=0.419 Sum_probs=20.4
Q ss_pred eEEEEEccccceeEEEEcCCCCEE
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLL 79 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~ 79 (536)
.+++||+|+-+.-.++++.+++.+
T Consensus 2 ii~sIDiGikNlA~~iie~~~~~i 25 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIEFEGNKI 25 (143)
T ss_pred eEEEEecCCCceeEEEEEcCCCeE
Confidence 489999999999999999766544
No 188
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=21.40 E-value=1.4e+02 Score=30.19 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccccccc
Q 009384 490 YLATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVFYLSQ 528 (536)
Q Consensus 490 ~rAvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGgs~s~ 528 (536)
.+-++|+++|++..-+-.+.. ...+++-|+++||.+..+
T Consensus 271 a~~~~~AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~ 310 (358)
T COG3426 271 AKLAYEAMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEK 310 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCEEEEecchhhHH
Confidence 346888899998887777766 577899999999986544
No 189
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=21.28 E-value=5.4e+02 Score=24.62 Aligned_cols=68 Identities=19% Similarity=0.150 Sum_probs=40.2
Q ss_pred CeEEEEEcccc-----ceeE-EEEc-CCCCEEEEEEeecccc-c-CCCccccCHHHHHHHHHHH--HHHHHHHcCCCCCC
Q 009384 55 SVFLGVDVGTG-----SARA-GLFD-ESGKLLGSASSPIQIW-K-EGDCIEQSSTDIWHAICAA--VDSACSLANVDGEE 123 (536)
Q Consensus 55 ~~~lgIDiGTt-----siKa-~l~d-~~g~i~~~~~~~~~~~-~-~~g~~eqd~~~~~~~i~~~--l~~~~~~~~~~~~~ 123 (536)
+++.|+|+.-. .+-+ ++++ .+++.+......++.. + .|| +-++.++ +.+++++..
T Consensus 26 ~~I~gvDiS~~~~~~~~vaa~Vv~~~~~~~~~~~~~~~~~~~~PYIPG---------~LafRE~p~l~~~~~~l~----- 91 (208)
T cd06559 26 RLVAGVDVSYKKDGDLAVAAAVVLDYPDLEVVETAVAVGEVTFPYIPG---------LLAFREGPPLLEALEKLK----- 91 (208)
T ss_pred cEEEEEEeeeccCCCeEEEEEEEEECCCCcEEEEEEEEEecCCCCcch---------hHHHhhHHHHHHHHHhCC-----
Confidence 57899999543 3333 3344 3799988887766543 2 444 3334444 556665432
Q ss_pred EEEEEEcCCCCeEEEcCCCC
Q 009384 124 VKGVGFAATCSLVAVDADGS 143 (536)
Q Consensus 124 I~aIgis~~~~~v~vD~~G~ 143 (536)
....++++|-+|.
T Consensus 92 -------~~PDlilVDG~G~ 104 (208)
T cd06559 92 -------TKPDLLLVDGHGI 104 (208)
T ss_pred -------CCCCEEEEeCCcc
Confidence 1377788887664
No 190
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=20.81 E-value=64 Score=33.03 Aligned_cols=50 Identities=10% Similarity=0.040 Sum_probs=28.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC-cc-EEEEecccccccccccc
Q 009384 482 SEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK-VR-EHIFHSVFYLSQSRTVR 533 (536)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~le~l~~-~g~~-~~-~I~~~GGgs~s~~~~~~ 533 (536)
+++++..++...++.+.-.++..++.... .... ++ .|+++||++ +-+.+.
T Consensus 241 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s--~ipgl~ 293 (334)
T PRK13927 241 SSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGA--LLRGLD 293 (334)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchh--hhhHHH
Confidence 45565555666667666666666654421 1111 23 599999984 444433
No 191
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=20.65 E-value=1.4e+02 Score=33.64 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=24.1
Q ss_pred CCCCCCCCCeEEEEEccccceeEEEEcCCCCEEE
Q 009384 47 TAPPARSRSVFLGVDVGTGSARAGLFDESGKLLG 80 (536)
Q Consensus 47 ~~~~~m~~~~~lgIDiGTtsiKa~l~d~~g~i~~ 80 (536)
..||.-.....|-||+|-|.+|.++++. ++++.
T Consensus 330 ~~~~~~~~~~~LliD~GNTriKwa~~~~-~~~~~ 362 (592)
T PRK13325 330 SVPKRRDSERFLLLDGGNSRLKWAWVEN-GTFAT 362 (592)
T ss_pred cCCCCCCCceEEEEEcCcCceeEEEEcC-Cceee
Confidence 4455544456889999999999999984 45553
No 192
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=20.64 E-value=3.7e+02 Score=22.72 Aligned_cols=59 Identities=24% Similarity=0.315 Sum_probs=34.4
Q ss_pred ceeEEEEcCCCCEEEEEEee--ccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 009384 66 SARAGLFDESGKLLGSASSP--IQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVG 128 (536)
Q Consensus 66 siKa~l~d~~g~i~~~~~~~--~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIg 128 (536)
.+.++++|.+++++-..+.. -..+. ..|.++.+- .. ...++|++.++.|+.......++
T Consensus 4 ~~~~~v~~~~~~vLl~~r~~~~~~~w~~PGG~ve~gE-t~---~~aa~RE~~EE~Gl~~~~~~~~~ 65 (127)
T cd04670 4 GVGGLVLNEKNEVLVVQERNKTPNGWKLPGGLVDPGE-DI---FDGAVREVLEETGIDTEFVSVVG 65 (127)
T ss_pred EEEEEEEcCCCeEEEEEccCCCCCcEECCCccCCCCC-CH---HHHHHHHHHHHHCCCcceeEEEE
Confidence 56788999888888654333 12233 456665322 22 23467888888887654333333
No 193
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=20.27 E-value=9.8e+02 Score=24.85 Aligned_cols=42 Identities=7% Similarity=-0.013 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecccccccccccc
Q 009384 489 LYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTVR 533 (536)
Q Consensus 489 ~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~~ 533 (536)
+.+++.|.+.-.+-...+..-+ -...+++.++||. +.++.+|
T Consensus 237 ia~sfQ~av~~~L~~kt~rAl~-~~~~~~lvi~GGV--aaN~~LR 278 (342)
T COG0533 237 IAASFQEAVFDMLVEKTERALK-HTGKKELVIAGGV--AANSRLR 278 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEeccH--HHhHHHH
Confidence 4457777665555544443322 1345689999997 4444444
No 194
>PRK12379 propionate/acetate kinase; Provisional
Probab=20.10 E-value=2.1e+02 Score=30.37 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=24.4
Q ss_pred CCeEEEEEccccceeEEEEcC-CCCEEEEEEe
Q 009384 54 RSVFLGVDVGTGSARAGLFDE-SGKLLGSASS 84 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~-~g~i~~~~~~ 84 (536)
.+++|.|..|+||+|..|||. +.+++.+...
T Consensus 4 ~~~iLvlN~GSSSlK~~l~~~~~~~~l~~G~v 35 (396)
T PRK12379 4 FPVVLVINCGSSSIKFSVLDASDCEVLMSGIA 35 (396)
T ss_pred CCEEEEEECChHhheEEEEECCCCceEEEEEE
Confidence 478999999999999999995 4456655443
Done!