Query 009384
Match_columns 536
No_of_seqs 231 out of 1605
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 03:59:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l0q_A Xylulose kinase; xlylul 100.0 3E-79 1E-83 670.3 37.0 455 54-535 4-461 (554)
2 3ll3_A Gluconate kinase; xylul 100.0 5.8E-78 2E-82 652.7 38.0 408 52-535 1-412 (504)
3 3ifr_A Carbohydrate kinase, FG 100.0 3.3E-78 1.1E-82 655.2 34.8 410 53-535 5-419 (508)
4 3hz6_A Xylulokinase; xylulose, 100.0 1.9E-77 6.6E-82 649.6 33.3 407 55-535 5-421 (511)
5 3jvp_A Ribulokinase; PSI-II, N 100.0 4.7E-76 1.6E-80 647.0 36.0 433 54-535 4-459 (572)
6 2itm_A Xylulose kinase, xylulo 100.0 2.7E-73 9.3E-78 614.0 33.6 403 56-535 1-405 (484)
7 3h3n_X Glycerol kinase; ATP-bi 100.0 6.8E-73 2.3E-77 613.5 32.9 404 54-535 4-422 (506)
8 3g25_A Glycerol kinase; IDP007 100.0 1.2E-72 4.2E-77 611.0 32.9 405 52-535 4-423 (501)
9 4e1j_A Glycerol kinase; struct 100.0 1.9E-72 6.5E-77 611.4 33.9 403 54-535 25-444 (520)
10 2p3r_A Glycerol kinase; glycer 100.0 8.8E-73 3E-77 613.0 31.1 405 54-535 2-420 (510)
11 3ezw_A Glycerol kinase; glycer 100.0 2E-72 6.7E-77 612.7 28.9 405 54-535 3-421 (526)
12 3i8b_A Xylulose kinase; strain 100.0 5.2E-72 1.8E-76 606.6 30.0 394 54-535 4-443 (515)
13 2zf5_O Glycerol kinase; hypert 100.0 2.3E-70 7.8E-75 592.9 32.4 400 55-535 3-412 (497)
14 2w40_A Glycerol kinase, putati 100.0 2.4E-70 8.3E-75 593.5 31.9 400 55-535 4-426 (503)
15 2dpn_A Glycerol kinase; thermu 100.0 6.3E-70 2.2E-74 589.2 34.2 400 55-535 2-417 (495)
16 2d4w_A Glycerol kinase; alpha 100.0 3.6E-70 1.2E-74 592.2 31.5 401 55-535 2-422 (504)
17 4bc3_A Xylulose kinase; transf 100.0 6.5E-70 2.2E-74 594.1 28.7 401 55-535 10-453 (538)
18 3h6e_A Carbohydrate kinase, FG 100.0 2.2E-67 7.5E-72 564.9 25.0 389 55-535 6-406 (482)
19 2uyt_A Rhamnulokinase; rhamnos 100.0 7.9E-62 2.7E-66 525.4 19.3 393 52-535 1-412 (489)
20 1z6r_A MLC protein; transcript 98.6 1.3E-08 4.4E-13 106.6 3.4 117 18-145 44-165 (406)
21 1z05_A Transcriptional regulat 98.6 3.1E-08 1E-12 104.6 6.0 128 18-164 67-199 (429)
22 2hoe_A N-acetylglucosamine kin 98.6 1.7E-08 6E-13 104.7 3.7 128 18-164 47-179 (380)
23 2qm1_A Glucokinase; alpha-beta 98.4 7E-07 2.4E-11 90.3 9.8 91 55-163 6-97 (326)
24 2ch5_A NAGK protein; transfera 98.4 1.8E-07 6.3E-12 95.5 5.0 112 49-169 1-117 (347)
25 3vgl_A Glucokinase; ROK family 98.2 4.3E-06 1.5E-10 84.5 9.8 88 55-167 2-90 (321)
26 2yhw_A Bifunctional UDP-N-acet 98.2 2.4E-06 8.3E-11 87.1 7.8 80 54-145 29-109 (343)
27 1zc6_A Probable N-acetylglucos 98.1 1.3E-05 4.5E-10 80.2 10.5 69 55-129 11-81 (305)
28 3r8e_A Hypothetical sugar kina 98.1 7.3E-06 2.5E-10 82.8 8.4 92 53-166 17-110 (321)
29 2e2o_A Hexokinase; acetate and 98.0 5E-06 1.7E-10 82.9 5.2 100 56-171 3-104 (299)
30 4db3_A Glcnac kinase, N-acetyl 97.9 3.1E-05 1.1E-09 78.3 10.3 76 55-145 24-100 (327)
31 1hux_A Activator of (R)-2-hydr 97.9 2.3E-05 8E-10 77.1 7.7 65 55-132 3-67 (270)
32 3htv_A D-allose kinase, alloki 97.8 1.1E-05 3.8E-10 81.1 5.3 87 55-163 7-94 (310)
33 3epq_A Putative fructokinase; 97.7 3.5E-05 1.2E-09 77.1 6.9 66 54-141 2-67 (302)
34 1woq_A Inorganic polyphosphate 97.6 0.00012 4E-09 71.8 8.1 79 55-145 12-92 (267)
35 4htl_A Beta-glucoside kinase; 97.6 0.00017 6E-09 71.8 9.4 72 56-146 5-77 (297)
36 3vov_A Glucokinase, hexokinase 97.5 9.1E-05 3.1E-09 74.0 6.2 75 56-145 2-77 (302)
37 2ap1_A Putative regulator prot 97.5 0.00024 8.2E-09 71.6 9.2 85 46-145 12-100 (327)
38 1zbs_A Hypothetical protein PG 97.4 9.6E-05 3.3E-09 73.4 4.4 103 56-170 1-105 (291)
39 2q2r_A Glucokinase 1, putative 97.3 0.00013 4.5E-09 75.1 4.9 101 19-145 3-107 (373)
40 4ehu_A Activator of 2-hydroxyi 97.3 0.00031 1.1E-08 69.0 7.4 66 55-133 1-66 (276)
41 3mcp_A Glucokinase; structural 97.3 0.00017 5.8E-09 74.1 4.6 74 54-145 8-86 (366)
42 1zxo_A Conserved hypothetical 97.1 5.7E-05 1.9E-09 75.1 -0.6 101 56-170 1-103 (291)
43 2yhx_A Hexokinase B; transfera 97.1 0.0013 4.4E-08 69.4 9.5 77 51-131 57-138 (457)
44 2aa4_A Mannac kinase, putative 97.1 0.0011 3.9E-08 65.3 8.2 53 56-115 2-54 (289)
45 1hux_A Activator of (R)-2-hydr 97.0 0.00018 6.3E-09 70.7 1.4 102 390-534 124-226 (270)
46 2gup_A ROK family protein; sug 97.0 0.0021 7.2E-08 63.5 9.2 69 56-145 5-74 (292)
47 1cza_N Hexokinase type I; stru 97.0 0.0018 6.1E-08 74.3 9.7 117 53-173 76-220 (917)
48 3h1q_A Ethanolamine utilizatio 96.8 0.0082 2.8E-07 58.4 11.4 65 52-118 25-89 (272)
49 3lm2_A Putative kinase; struct 96.7 0.00089 3E-08 63.9 3.4 66 54-142 5-70 (226)
50 1bdg_A Hexokinase; phosphotran 96.6 0.007 2.4E-07 63.7 10.1 73 53-130 66-142 (451)
51 1sz2_A Glucokinase, glucose ki 96.5 0.0026 8.9E-08 64.2 6.0 61 53-130 12-73 (332)
52 3djc_A Type III pantothenate k 96.2 0.0076 2.6E-07 58.8 7.3 63 56-131 3-65 (266)
53 1saz_A Probable butyrate kinas 96.2 0.0027 9.1E-08 65.5 4.1 68 55-129 2-72 (381)
54 3zyy_X Iron-sulfur cluster bin 96.1 0.0097 3.3E-07 64.7 8.0 78 54-131 205-297 (631)
55 3o8m_A Hexokinase; rnaseh-like 95.7 0.027 9.4E-07 59.5 9.2 73 53-129 78-154 (485)
56 3bex_A Type III pantothenate k 95.6 0.016 5.6E-07 55.9 6.6 61 55-130 3-63 (249)
57 1cza_N Hexokinase type I; stru 95.1 0.045 1.5E-06 62.7 9.1 77 49-130 520-601 (917)
58 2h3g_X Biosynthetic protein; p 95.0 0.049 1.7E-06 53.2 7.6 62 57-130 2-63 (268)
59 4a2a_A Cell division protein F 94.6 0.13 4.5E-06 53.5 10.3 77 54-132 7-86 (419)
60 2ivn_A O-sialoglycoprotein end 94.0 0.16 5.4E-06 51.0 9.0 75 56-132 2-77 (330)
61 2ych_A Competence protein PILM 93.7 0.18 6.2E-06 51.2 8.9 71 55-132 13-86 (377)
62 3eno_A Putative O-sialoglycopr 92.3 0.28 9.4E-06 49.4 7.8 81 52-134 3-84 (334)
63 3hm8_A Hexokinase-3; glucose, 92.2 0.5 1.7E-05 49.2 9.7 82 44-130 47-132 (445)
64 3f9m_A Glucokinase; hexokinase 90.9 0.34 1.2E-05 50.8 6.8 65 53-119 75-144 (470)
65 1vhx_A Putative holliday junct 87.5 0.84 2.9E-05 40.2 5.8 24 56-79 4-27 (150)
66 3en9_A Glycoprotease, O-sialog 86.9 1.8 6.1E-05 46.3 9.2 80 52-134 3-83 (540)
67 3cet_A Conserved archaeal prot 86.7 0.75 2.6E-05 45.8 5.6 33 56-89 1-33 (334)
68 2f9w_A Pantothenate kinase; CO 86.5 1.4 4.7E-05 42.8 7.2 34 51-85 20-53 (271)
69 3t69_A Putative 2-dehydro-3-de 85.2 0.8 2.7E-05 45.6 4.9 32 55-86 7-38 (330)
70 1t6c_A Exopolyphosphatase; alp 84.5 2 6.7E-05 42.7 7.5 71 56-131 13-92 (315)
71 3nuw_A 2-OXO-3-deoxygalactonat 83.5 0.94 3.2E-05 44.4 4.5 35 52-88 4-38 (295)
72 2ews_A Pantothenate kinase; PA 82.9 1.1 3.8E-05 43.8 4.8 26 55-81 20-45 (287)
73 3mdq_A Exopolyphosphatase; str 82.7 3.5 0.00012 40.8 8.5 74 52-131 2-84 (315)
74 1nbw_A Glycerol dehydratase re 80.5 2.8 9.6E-05 44.6 7.0 64 55-125 2-68 (607)
75 4gni_A Putative heat shock pro 80.5 0.77 2.6E-05 47.1 2.8 51 481-533 311-361 (409)
76 3sk3_A Acetate kinase, acetoki 80.5 1.9 6.4E-05 44.4 5.6 37 491-527 315-352 (415)
77 3r6m_A YEAZ, resuscitation pro 76.5 3.9 0.00013 38.1 6.0 64 56-133 3-66 (213)
78 2a6a_A Hypothetical protein TM 75.1 4.2 0.00015 38.0 5.9 65 55-133 12-76 (218)
79 4ep4_A Crossover junction endo 74.7 12 0.00043 33.2 8.6 62 56-129 2-69 (166)
80 1u6z_A Exopolyphosphatase; alp 72.9 8.7 0.0003 40.7 8.4 76 53-131 9-91 (513)
81 2gel_A Putative GRAM negative 72.9 9.6 0.00033 35.8 7.9 64 56-133 2-65 (231)
82 4ijn_A Acetate kinase, acetoki 72.7 16 0.00054 37.2 9.8 34 491-525 300-334 (398)
83 3bzc_A TEX; helix-turn-helix, 72.2 6.7 0.00023 43.7 7.5 63 54-129 328-391 (785)
84 1xho_A Chorismate mutase; sout 70.0 5.3 0.00018 34.4 4.7 37 97-133 44-80 (148)
85 3cqy_A Anhydro-N-acetylmuramic 70.0 12 0.00042 37.7 8.3 80 52-131 2-99 (370)
86 1yuw_A Heat shock cognate 71 k 69.8 2.2 7.6E-05 45.7 3.0 25 52-77 1-25 (554)
87 2e1z_A Propionate kinase; TDCD 69.5 13 0.00045 38.0 8.4 33 492-525 308-341 (415)
88 4b9q_A Chaperone protein DNAK; 69.3 9.7 0.00033 41.2 8.0 52 481-534 300-351 (605)
89 3hi0_A Putative exopolyphospha 68.4 13 0.00043 39.4 8.4 73 55-132 15-96 (508)
90 3qfu_A 78 kDa glucose-regulate 68.1 2.7 9.1E-05 42.5 3.0 51 481-533 310-360 (394)
91 1dbf_A Protein (chorismate mut 67.5 6.4 0.00022 33.2 4.6 37 97-133 15-51 (127)
92 3r9p_A ACKA; ssgcid, seattle s 67.1 25 0.00087 35.6 9.9 35 491-526 291-326 (391)
93 3cer_A Possible exopolyphospha 65.9 8.4 0.00029 38.5 6.2 74 55-131 16-97 (343)
94 1ufy_A Chorismate mutase; shik 65.9 8 0.00027 32.4 4.9 37 97-133 14-51 (122)
95 2d0o_A DIOL dehydratase-reacti 65.3 26 0.0009 37.2 9.8 70 55-129 2-73 (610)
96 2i7n_A Pantothenate kinase 1; 63.9 46 0.0016 33.4 11.1 53 468-525 257-317 (360)
97 3cj1_A Ectonucleoside triphosp 63.9 6.4 0.00022 41.0 5.0 58 55-114 34-99 (456)
98 1iv0_A Hypothetical protein; r 61.2 21 0.00072 28.6 6.6 22 57-78 3-24 (98)
99 1hjr_A Holliday junction resol 61.0 29 0.001 30.4 8.0 54 56-117 2-58 (158)
100 1dkg_D Molecular chaperone DNA 59.9 3.2 0.00011 41.8 1.8 50 482-533 301-350 (383)
101 3psf_A Transcription elongatio 58.8 8.9 0.0003 44.0 5.3 30 55-84 519-553 (1030)
102 2zgy_A Plasmid segregation pro 57.5 6.9 0.00024 38.4 3.7 23 57-79 2-24 (320)
103 3qbx_A Anhydro-N-acetylmuramic 56.4 13 0.00044 37.5 5.5 77 55-131 2-95 (371)
104 4gib_A Beta-phosphoglucomutase 55.5 2.6 9E-05 39.6 0.2 22 58-79 9-38 (250)
105 3i33_A Heat shock-related 70 k 55.0 5.3 0.00018 40.5 2.5 50 482-533 319-368 (404)
106 4b9q_A Chaperone protein DNAK; 52.7 7.1 0.00024 42.3 3.1 18 56-73 3-20 (605)
107 3aap_A Ectonucleoside triphosp 50.8 23 0.00079 35.5 6.3 19 55-73 3-21 (353)
108 3psi_A Transcription elongatio 50.7 32 0.0011 40.3 8.2 30 55-84 516-550 (1219)
109 2v7y_A Chaperone protein DNAK; 46.8 10 0.00035 39.9 3.2 50 482-533 270-319 (509)
110 3zx3_A Ectonucleoside triphosp 44.7 22 0.00074 37.0 5.1 60 54-115 33-100 (452)
111 2ews_A Pantothenate kinase; PA 44.2 1.1E+02 0.0039 29.4 10.0 41 480-525 206-248 (287)
112 3khy_A Propionate kinase; csgi 43.1 26 0.00089 35.4 5.2 34 491-525 290-324 (384)
113 3d2f_A Heat shock protein homo 42.3 10 0.00035 41.6 2.4 50 482-533 302-351 (675)
114 4h0p_A Acetate kinase; askha ( 41.6 25 0.00086 36.1 4.9 30 55-84 6-36 (438)
115 2kho_A Heat shock protein 70; 40.6 11 0.00038 40.8 2.2 21 56-77 3-23 (605)
116 1jce_A ROD shape-determining p 40.6 13 0.00044 36.7 2.5 47 482-533 242-294 (344)
117 4gni_A Putative heat shock pro 38.2 14 0.00049 37.4 2.5 26 50-77 9-34 (409)
118 1nu0_A Hypothetical protein YQ 38.1 29 0.001 29.7 4.1 23 56-78 4-26 (138)
119 4apw_A ALP12; actin-like prote 37.4 15 0.00053 36.2 2.6 23 50-72 2-24 (329)
120 3qfu_A 78 kDa glucose-regulate 37.0 18 0.00062 36.2 3.0 22 55-77 18-39 (394)
121 1eik_A RNA polymerase subunit 36.6 29 0.001 26.5 3.4 34 264-313 22-55 (77)
122 1g99_A Acetate kinase; alpha/b 36.4 32 0.0011 35.0 4.7 33 492-525 300-333 (408)
123 2iir_A Acetate kinase; transfe 35.7 34 0.0012 34.8 4.7 33 492-525 300-333 (403)
124 3i33_A Heat shock-related 70 k 33.3 19 0.00065 36.3 2.5 22 55-77 23-44 (404)
125 2fsj_A Hypothetical protein TA 32.3 22 0.00077 35.2 2.8 23 55-79 21-43 (346)
126 1dw0_A Cytochrome C; asparagin 30.2 14 0.00048 30.6 0.7 33 193-225 78-111 (112)
127 1dkg_D Molecular chaperone DNA 30.1 24 0.00083 35.2 2.6 21 56-77 3-23 (383)
128 1hmj_A RPB5, protein (subunit 29.8 28 0.00096 26.7 2.3 36 262-313 18-53 (78)
129 2ych_A Competence protein PILM 28.5 47 0.0016 32.9 4.5 44 483-526 273-318 (377)
130 4h0o_A Acetate kinase; askha ( 28.4 55 0.0019 33.2 4.8 33 491-524 303-336 (404)
131 3h1q_A Ethanolamine utilizatio 26.3 26 0.0009 33.0 2.0 41 483-527 199-239 (272)
132 4a2a_A Cell division protein F 24.8 72 0.0025 32.5 5.1 45 482-526 290-340 (419)
133 3mdq_A Exopolyphosphatase; str 23.4 89 0.003 30.4 5.3 32 55-87 131-162 (315)
134 2ov7_A 50S ribosomal protein L 22.2 2.8E+02 0.0094 23.5 7.4 83 58-140 47-135 (137)
135 1mzp_A 50S ribosomal protein L 20.5 1.5E+02 0.0052 27.2 5.9 39 93-132 170-208 (217)
No 1
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=100.00 E-value=3e-79 Score=670.34 Aligned_cols=455 Identities=47% Similarity=0.825 Sum_probs=384.5
Q ss_pred CCeEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
++|+||||+|||++|++|+|++|+++++.+.+++.+. .+||+||||++||+++++++++++++.++...+|.+||||+|
T Consensus 4 ~~~~lgIDiGtts~ka~l~d~~G~il~~~~~~~~~~~p~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~ 83 (554)
T 3l0q_A 4 ASYFIGVDVGTGSARAGVFDLQGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDAVNQADINPIQVKGLGFDAT 83 (554)
T ss_dssp CCEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEEC
T ss_pred CcEEEEEEECcccEEEEEECCCCCEEEEEEEecccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCHhHEEEEEEcCC
Confidence 4699999999999999999999999999999998655 899999999999999999999999988877789999999999
Q ss_pred CCeEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCchhHHhhhCCCCCCCChHHHHHHHHHhCchhHhhhce
Q 009384 133 CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFR 212 (536)
Q Consensus 133 ~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~ 212 (536)
+++|+||++|+|+....++++.+|+|+|+|.|+.++++++++..++++++||+++++.++++||+||++|+|++|+++.+
T Consensus 84 ~~~v~~D~~G~pl~~~~~~~~~~~ai~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~Pe~~~~~~~ 163 (554)
T 3l0q_A 84 CSLVVLDKEGNPLTVSPSGRNEQNVIVWMDHRAITQAERINATKHPVLEFVGGVISPEMQTPKLLWLKQHMPNTWSNVGH 163 (554)
T ss_dssp SCEEEEETTSCBCCCSTTCCTTCCEECTTCCTTHHHHHHHHHHTCGGGGGBTTCCCTTSHHHHHHHHHHHCHHHHHHEEE
T ss_pred CceEEECCCCCEeeccCCCCCCCCcEEecccchHHHHHHHHHhHHHHHHHhCCCCChhhHHHHHHHHHHhChHHHHHhce
Confidence 99999999999995333345567999999999999999998766789999999999999999999999999999999999
Q ss_pred eecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccccCccccCCC
Q 009384 213 WMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPG 292 (536)
Q Consensus 213 ~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l~~~i~~~g 292 (536)
|++++|||.|+|||+...+++|. |+++ .||+++++||+++|+.+||++.+...+.+||+++++++
T Consensus 164 ~~~~~dyl~~~LTG~~~~s~as~-----------t~~~----~~d~~~~~W~~~ll~~~gi~~~~~~~~~~Lp~~i~~~~ 228 (554)
T 3l0q_A 164 LFDLPDFLTWRATKDETRSLCST-----------VCKW----TYLGHEDRWDPSYFKLVGLADLLDNNAAKIGATVKPMG 228 (554)
T ss_dssp EEEHHHHHHHHHHSCCCEEHHHH-----------HHHS----CCBTTTTBCCHHHHHHHTCGGGGHHHHTTTCSCEECTT
T ss_pred EEcHHHHHHHHHhCCccccccch-----------hhcc----ccccccCCCCHHHHHHcCCccccchhHHhCCCcccCCc
Confidence 99999999999999986555553 3322 25888999999999999998632000015554699999
Q ss_pred Cccc-CCccHHHHHHcCCCCCCcEEeccchhHhhhhcccccc-CCcchhhhhhhhhhccCeEEEEecccceeeeeecccc
Q 009384 293 HPLG-SGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESV-PESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKL 370 (536)
Q Consensus 293 ~~~G-~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~-~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~~~~~~ 370 (536)
+++| + |++++|+++||++||||++|++|++|+++|++|+. +|| ++. ..++++++++|||+++.+++++|.
T Consensus 229 ~~~G~~-lt~~~A~~~GL~~g~pV~~g~gD~~aa~lg~~G~~~~~G---~~~----~~~~~~~~~~GTs~~~~~~~~~~~ 300 (554)
T 3l0q_A 229 APLGHG-LSQRAASEMGLIPGTAVSVSIIDAHAGTIGILGASGVTG---ENA----NFDRRIALIGGTSTAHMAMSRSAH 300 (554)
T ss_dssp CBCTTS-SCHHHHHHHTCCTTCEEBCCEEHHHHHHHHHTTCCCTTS---CCC----CTTTEEEEECSSSEEEEEEESSCC
T ss_pred CeeCcc-cCHHHHHHhCCCCCCeEEEeChHHHhHHhhccccccCCC---ccc----cccceEEEEecchheeeeecCCcc
Confidence 9999 8 99999999999999999999999999999853444 465 100 001268899999999999999988
Q ss_pred ccCCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCCCCCCC
Q 009384 371 FIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTE 450 (536)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~ 450 (536)
.+++.+.+++++..++.|+++++++++|.+++|+++.+...+++...++..+.+.|+.|++++++.+... +-.+.+++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~ 378 (554)
T 3l0q_A 301 FISGIWGPYYSAILPEYWLNEGGQSATGALIDHIIQSHPCYPALLEQAKNKGETIYEALNYILRQMAGEP--ENIAFLTN 378 (554)
T ss_dssp CCTTSEEEEETSSSTTCEEEEEEESCSHHHHHHHHHTSTTHHHHHHHHHHTTCCHHHHHHHHHHHHHSSG--GGGGGGGT
T ss_pred ccCCcceeecccccCCceEecchhhhhHHHHHHHHHhcccchHHHHHHHhcCCCHHHHHHHHHHhcCCCC--CccccccC
Confidence 8787776666677789999999999999999999998754333333344456788999998887754210 00011379
Q ss_pred CeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccccccccc
Q 009384 451 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSR 530 (536)
Q Consensus 451 gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~ 530 (536)
|++|+|||.|+|+|+|||++||+|+|++..|++.|++|++||++|||||.+|++++.|++.|.++++|+++||+ +||+
T Consensus 379 gl~flP~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~--aks~ 456 (554)
T 3l0q_A 379 DIHMLPYFHGNRSPRANPNLTGIITGLKLSTTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGG--TKNP 456 (554)
T ss_dssp TCCEECCTTCBCSSSCBTTCCCEECSCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGG--GGCH
T ss_pred ceEEcccccCCCCCCCCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCcc--ccCH
Confidence 99999999999999999999999999999999999988899999999999999999999889899999999997 6788
Q ss_pred ccccC
Q 009384 531 TVRSF 535 (536)
Q Consensus 531 ~~~~~ 535 (536)
-|+|+
T Consensus 457 ~~~Qi 461 (554)
T 3l0q_A 457 IFVQE 461 (554)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88775
No 2
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=100.00 E-value=5.8e-78 Score=652.66 Aligned_cols=408 Identities=19% Similarity=0.297 Sum_probs=359.4
Q ss_pred CCCCeEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 009384 52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (536)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis 130 (536)
|+++|+||||+|||++|++|+|++|+++++.+.+++.+. .+||+||||++||+++++++++++++.+ .+|.+||||
T Consensus 1 M~m~~~lgIDiGtts~K~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~---~~I~~Igis 77 (504)
T 3ll3_A 1 MSLKYIIGMDVGTTATKGVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQKID---GKIAAISWS 77 (504)
T ss_dssp -CCEEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTCS---SEEEEEEEE
T ss_pred CCCCEEEEEEecCCceEEEEEcCCCCEEEEEEeecceecCCCCcEEECHHHHHHHHHHHHHHHHHhCC---CCeEEEEEE
Confidence 556799999999999999999999999999999998654 8999999999999999999999988754 689999999
Q ss_pred CC-CCeEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhH
Q 009384 131 AT-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESW 207 (536)
Q Consensus 131 ~~-~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~ 207 (536)
+| +++|+||++|+|+ +|+|+|+|.|+.++++++++.. ++++++||+++++.++++||+|+++|+||+|
T Consensus 78 ~q~~~~v~~D~~G~pl---------~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~ 148 (504)
T 3ll3_A 78 SQMHSLIGLGSDDELL---------TNSITWADNCAKSIVQDAKNRGFAQQIYRKTGMPMHPMAPIYKLLWLKNKKTEVF 148 (504)
T ss_dssp ECSSCBEEECTTSCBS---------SCEECTTCCTTHHHHHHHHHHTHHHHHHHHHCCCSCTTSHHHHHHHHHHHCHHHH
T ss_pred CCCCcEEEECCCCCCc---------ccceeCCccCHHHHHHHHHhccCHHHHHHHHCCCCCcccHHHHHHHHHHcChHHH
Confidence 98 9999999999999 9999999999999999998764 7899999999999999999999999999999
Q ss_pred hhhceeecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccccCcc
Q 009384 208 SMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRS 287 (536)
Q Consensus 208 ~~~~~~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l~~~ 287 (536)
+++.+|++++|||.|+|||+.. ++.|+ ||+|+| ||+++++||+++|+.+|||..++ | +
T Consensus 149 ~~~~~~~~~~dyl~~~LTG~~~-~d~s~--------As~t~l------~d~~~~~W~~~ll~~~gi~~~~L---P----~ 206 (504)
T 3ll3_A 149 SQAQKWIGIKEYIIFRLTGKLV-TDTTM--------AAGTGI------LNLKTLTWDQELLDILKIKKEQL---P----K 206 (504)
T ss_dssp HHCCEEECHHHHHHHHHHSCCE-EEHHH--------HTTTTC------BCTTTSSBCHHHHHHHTCCGGGS---C----E
T ss_pred HHHhheeCHHHHHHHHHhCCcc-cchhH--------hhcccC------eeCCCCCcCHHHHHHcCCCHHHC---C----C
Confidence 9999999999999999999975 45443 456665 48999999999999999997554 4 7
Q ss_pred ccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceeeeeec
Q 009384 288 VAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSR 367 (536)
Q Consensus 288 i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~~~ 367 (536)
++++++++|+ |++++|+++||++|+||++|+||++|+++|+ |+.+|| ++++++|||+++.++++
T Consensus 207 i~~~~~~~G~-l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~~~~g--------------~~~~s~GTs~~~~~~~~ 270 (504)
T 3ll3_A 207 IAQPTKVIFP-IKTEYVKKLGIDSDTKIILGASDGYLSTIGV-NAIDSD--------------HCALNVGTSGAIRTIVD 270 (504)
T ss_dssp EECTTCEECC-CCHHHHHHHTCCTTCEEEEEEEHHHHHHHTT-TCCSTT--------------EEEEEESSSEEEEEEES
T ss_pred eeCCcceeec-cCHHHHHhcCCCcCCCEEEEccHHHHHHHhC-CCCCCC--------------cEEEEechhhhheeeCC
Confidence 9999999998 9999999999999999999999999999999 777787 89999999999999999
Q ss_pred cccccCCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCCCC
Q 009384 368 NKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAA 447 (536)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~ 447 (536)
+|..++.... +++...++.|+++++++++|.+++|+++.+...+ ..++.+.+++++ +|+
T Consensus 271 ~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~-----------~~~~~~~~~a~~---------~~~ 329 (504)
T 3ll3_A 271 QPKIDPSASY-FCYPADKTHYLLGGPVNNGGIVFNWARQTLFDAD-----------ETPQDFLDVAQT---------APA 329 (504)
T ss_dssp SCCCCTTCCS-EEEEEETTEEEEEEEESCSHHHHHHHHHHHTCTT-----------CCHHHHHHHHHT---------SCT
T ss_pred CcccCCCCce-EEEEeCCCeEEEEeehhhHHHHHHHHHHHhccch-----------hHHHHHHHHHhc---------CCC
Confidence 8876653321 3333346789999999999999999999875421 112333334443 557
Q ss_pred CCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecccccc
Q 009384 448 LTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLS 527 (536)
Q Consensus 448 g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s 527 (536)
+++|++|+|||.|+|+|+|||++||+|+|++..|++.|+ +||++|||||.+|++++.|++.+.++++|+++||+ +
T Consensus 330 g~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGg--a 404 (504)
T 3ll3_A 330 GSRNLIFLPYLGGERAPIWDANARGSFVGLTRMHQKPEM---ARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGF--L 404 (504)
T ss_dssp TGGGCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHH---HHHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGG--G
T ss_pred CCCCeEEecCccCCCCCCCCCccCeEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCch--h
Confidence 999999999999999999999999999999999999985 67999999999999999999888889999999997 6
Q ss_pred cccccccC
Q 009384 528 QSRTVRSF 535 (536)
Q Consensus 528 ~~~~~~~~ 535 (536)
||+-|+|+
T Consensus 405 ~s~~~~Qi 412 (504)
T 3ll3_A 405 KSDFVRQL 412 (504)
T ss_dssp CSHHHHHH
T ss_pred cCHHHHHH
Confidence 78887775
No 3
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=100.00 E-value=3.3e-78 Score=655.17 Aligned_cols=410 Identities=19% Similarity=0.246 Sum_probs=362.9
Q ss_pred CCCeEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 009384 53 SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~ 131 (536)
.++|+||||+|||++|++|+|++|+++++.+.+++... .+||+||||++||+++++++++++++.+++..+|.+|||++
T Consensus 5 ~~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~~~I~~Igis~ 84 (508)
T 3ifr_A 5 QGRQVIGLDIGTTSTIAILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAGESDWRPGGICVTG 84 (508)
T ss_dssp --CEEEEEEECSSEEEEEEEETTTEEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEEE
T ss_pred cCCEEEEEEecCcceEEEEECCCCCEEEEEEEecceecCCCCceEECHHHHHHHHHHHHHHHHHhcCCChhheEEEEEEC
Confidence 34799999999999999999999999999999998654 89999999999999999999999988777778999999999
Q ss_pred C-CCeEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHh
Q 009384 132 T-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS 208 (536)
Q Consensus 132 ~-~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~ 208 (536)
| +++|+||++|+|+ +|+|+|+|.|+.++++++++.. ++++++||+++++.++++||+|+++|+||+|+
T Consensus 85 ~~~~~v~~D~~G~~l---------~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~ 155 (508)
T 3ifr_A 85 MLPAVVLLDDRGAVL---------RPSIQQSDGRCGDEVAELRAEVDSEAFLARTGNGVTQQLVTAKLRWIERHEPAVFG 155 (508)
T ss_dssp CSSCBEEECTTSCBC---------SCEECTTCCCCHHHHHHHHHHSCHHHHHHHHSSCSSTTSHHHHHHHHHHHCHHHHH
T ss_pred CCCcEEEECCCCCCc---------ccceeccccChHHHHHHHHhhccHHHHHHHHCCCCChhhHHHHHHHHHHcCHHHHH
Confidence 8 9999999999999 8999999999999999998764 67999999999999999999999999999999
Q ss_pred hhceeecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccccCccc
Q 009384 209 MVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV 288 (536)
Q Consensus 209 ~~~~~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l~~~i 288 (536)
++++|++++|||.|+|||+.. ++.|+ ||+|++ ||+++++||+++|+.+|||..++ | ++
T Consensus 156 ~~~~~l~~~dyl~~~LTG~~~-~d~s~--------As~t~l------~d~~~~~W~~~ll~~~gi~~~~L---P----~i 213 (508)
T 3ifr_A 156 AIATVCGSYDYINMLLTGERV-VDRNW--------ALEGGF------IDLASGTVEADLVALAHIPPSAV---P----PA 213 (508)
T ss_dssp TCSEEECHHHHHHHHHHCCCC-EEHHH--------HHHHTC------EETTTTEECHHHHHTTTSCGGGS---C----CE
T ss_pred HHhhhcCchHHHHHHhcCCcc-ccHhH--------hhcccC------ccCccCCCCHHHHHHcCCCHHHC---C----CC
Confidence 999999999999999999974 55553 456665 48899999999999999997554 4 79
Q ss_pred cCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceeeeeecc
Q 009384 289 AFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRN 368 (536)
Q Consensus 289 ~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~~~~ 368 (536)
+++++++|+ |++++|+++||++|+||++|+||++|+++|+ |+.+|| ++++++|||+++.+++++
T Consensus 214 ~~~~~~~G~-l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~~~~g--------------~~~~s~GTs~~~~~~~~~ 277 (508)
T 3ifr_A 214 HPTHRVLGA-VTAEAAALTGLPTGLPVYGGAADHIASALAA-GITRPG--------------DVLLKFGGAGDIIVASAT 277 (508)
T ss_dssp ECTTSEEEE-CCHHHHHHHCCCTTCEEECCEEHHHHHHHHT-TCCSTT--------------EEEEEESSSEEEEECBSC
T ss_pred cCCCCeeec-cCHHHHHHhCCCCCCeEEEECchHHHHHHhC-CCCCCC--------------cEEEEechhhhheeeCCC
Confidence 999999997 9999999999999999999999999999999 777787 899999999999999998
Q ss_pred ccccCCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCC-HHHHHHHHHHhhhhhcCCCCCCC
Q 009384 369 KLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVS-LFELLNGTLESMIHERNSPFVAA 447 (536)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~p~~~~ 447 (536)
+..++..+ . +++..++.|+++++++++|.+++|+++.+.. .+.+ .|++|++++++ +|+
T Consensus 278 ~~~~~~~~-~-~~~~~~g~~~~~g~~~~~G~~~~W~~~~~~~----------~~~~~~~~~l~~~a~~---------~~~ 336 (508)
T 3ifr_A 278 AKSDPRLY-L-DYHLVPGLYAPNGCMAATGSALNWLAKLLAP----------EAGEAAHAQLDALAAE---------VPA 336 (508)
T ss_dssp CCCBTTBB-C-CBCSSTTCBCCEEEESSSHHHHHHHHHHHST----------TCTTHHHHHHHHHHHT---------SCT
T ss_pred cccCCCcc-e-eeeecCCceEEechhhhhHHHHHHHHHHHhh----------cCCCCCHHHHHHHHhc---------CCC
Confidence 87766633 2 3445688999999999999999999998741 0111 58888888765 457
Q ss_pred CCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecccccc
Q 009384 448 LTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLS 527 (536)
Q Consensus 448 g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s 527 (536)
+++|++|+|||.|||+|+|||++||+|+|++..|++.|+ +||++||+||.+|++++.|++.|.++++|+++||+ +
T Consensus 337 ~~~gl~flP~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGg--a 411 (508)
T 3ifr_A 337 GADGLVCLPYFLGEKTPIHDPFASGTFTGLSLSHTRGHL---WRALLEAVALAFRHHVAVLDDIGHAPQRFFASDGG--T 411 (508)
T ss_dssp TGGGCEEECCTTCCC----CCCCCCEEESCCTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEESGG--G
T ss_pred CCCCeEEecCCCCCCCCCCCCCcCEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCc--c
Confidence 999999999999999999999999999999999999985 67999999999999999999888899999999998 5
Q ss_pred cccccccC
Q 009384 528 QSRTVRSF 535 (536)
Q Consensus 528 ~~~~~~~~ 535 (536)
||+-|+|+
T Consensus 412 ~s~~~~Qi 419 (508)
T 3ifr_A 412 RSRVWMGI 419 (508)
T ss_dssp GCHHHHHH
T ss_pred cCHHHHHH
Confidence 78888775
No 4
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=100.00 E-value=1.9e-77 Score=649.63 Aligned_cols=407 Identities=20% Similarity=0.250 Sum_probs=361.7
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT- 132 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~- 132 (536)
+|+||||+|||++|++|+|.+|++++..+.+++.+. .+||+||||++||+++++++++++ +.+++..+|.+||||+|
T Consensus 5 ~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~-~~~~~~~~I~~Igis~q~ 83 (511)
T 3hz6_A 5 FYIATFDIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWW-QSGVDARRVSAIVLSGQM 83 (511)
T ss_dssp CEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHHHH-TTTCCGGGEEEEEEEECC
T ss_pred cEEEEEEeCCCceEEEEECCCCCEEEEEEeecceecCCCCCEEECHHHHHHHHHHHHHHHH-hcCCChhHeEEEEEeccc
Confidence 599999999999999999999999999999998655 899999999999999999999998 76666789999999998
Q ss_pred CCeEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhhh
Q 009384 133 CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMV 210 (536)
Q Consensus 133 ~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~ 210 (536)
+++|+||++|+|+ +|+|+|+|.|+.++++++++.. ++++++||+++++.++++||+|+++|+||+|+++
T Consensus 84 ~~~v~~D~~G~pl---------~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~ 154 (511)
T 3hz6_A 84 QNFLPLDQDHEPL---------HRAVLYSDKRPLKEAEEINARHGADNLWSALENPMTAASILPKLVFWRASFPQAFGRL 154 (511)
T ss_dssp SCBEEECTTSCBS---------SCEECTTCCCCHHHHHHHHHHHCHHHHHHHHSSCCSTTSHHHHHHHHHHHCHHHHTTC
T ss_pred ccEEEECCCcCCC---------cCceecCCCCHHHHHHHHHhccCHHHHHHHHCCCCCchhHHHHHHHHHHhChHHHHHH
Confidence 9999999999999 9999999999999999998764 6799999999999999999999999999999999
Q ss_pred ceeec-chhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccccCcccc
Q 009384 211 FRWMD-LSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA 289 (536)
Q Consensus 211 ~~~l~-~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l~~~i~ 289 (536)
.+|++ ++|||.|+|||+.. ++.|+ ||+|++ ||+++++||+++|+.+|||..++ | +++
T Consensus 155 ~~~l~~~~dyl~~~LTG~~~-~d~s~--------As~t~l------~d~~~~~W~~~ll~~~gi~~~~L---P----~i~ 212 (511)
T 3hz6_A 155 RHVVLGAKDYVVLRLTGRHA-TDRTN--------ASTTGL------YRPKDDAWHVELLADYGFSLDLM---P----RLL 212 (511)
T ss_dssp CEEECSHHHHHHHHHHSCCE-ECHHH--------HHHTTC------EETTTTEECHHHHHHTTCCGGGS---C----EEC
T ss_pred HHHhcCcHHHHHHHHhCCce-eeHhH--------hhcccc------eeCCCCCcCHHHHHHhCCCHHHC---C----CCc
Confidence 99999 99999999999875 45543 456665 48899999999999999997554 4 799
Q ss_pred CCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceeeeeec-c
Q 009384 290 FPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSR-N 368 (536)
Q Consensus 290 ~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~~~-~ 368 (536)
++++++|+ |++++|+++||++|+||++|+||++|+++|+ |+.+|| ++++++|||+++.++++ +
T Consensus 213 ~~~~~~G~-l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~~~~g--------------~~~~s~GTs~~~~~~~~~~ 276 (511)
T 3hz6_A 213 EPGEQVGG-VSALAARQTGFVSGTPVLCGLGDAGAATLGV-GVLDDE--------------DAYLHLGTTGWLARLTQTD 276 (511)
T ss_dssp CTTSEEEE-CCHHHHHHHCCCTTCEEECCEEHHHHHHHHT-TCCSTT--------------CEEEEESSSEEEEEEEECC
T ss_pred CCCCcccc-cCHHHHHhhCCCCCCeEEEECchHHHHHHhC-CCCCCC--------------cEEEEecchhhheeecCCe
Confidence 99999997 9999999999999999999999999999999 777787 89999999999999998 8
Q ss_pred cccc-CCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCCCC
Q 009384 369 KLFI-PGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAA 447 (536)
Q Consensus 369 ~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~ 447 (536)
|..+ +......+++..++.|..+++++++|.+++|+++.+... ....|++|++++++ +|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~----------~~~~~~~l~~~a~~---------~~~ 337 (511)
T 3hz6_A 277 PVGDMPVGTIFRLAGIIAGKTLQVAPVLNAGNILQWALTLVGHR----------PGEDCAEYFHMAAA---------EVQ 337 (511)
T ss_dssp CCCSCCSSCCEEECSSSTTEEEEEEEESSSHHHHHHHGGGGTCC----------TTSCSHHHHHHHHH---------HHT
T ss_pred ecccCCCCceEEEEEecCCceEEEeehhhHHHHHHHHHHHhccc----------ccccHHHHHHHHHh---------CCC
Confidence 8776 643222233456788777789999999999999987510 01247888888876 346
Q ss_pred C---CCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccc
Q 009384 448 L---TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVF 524 (536)
Q Consensus 448 g---~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGg 524 (536)
+ ++|++|+|||.|+|+|+||+++||+|+|++..|++.|+ +||++|||||.+|++++.|++ |. +++|+++||+
T Consensus 338 g~~~~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~~~~~~~l~~-g~-~~~i~~~GGg 412 (511)
T 3hz6_A 338 GVTVPDGLLFVPYLHAERCPVELPAPRGALLGVTGATTRAQI---LLAVLEGAALSLRWCAELLGM-EK-VGLLKVVGGG 412 (511)
T ss_dssp TCCCCTTCEEEEESSCBCSSSCBSSCEEEEECCCTTCCHHHH---HHHHHHHHHHHHHHHHHHHTG-GG-CCEEEEESGG
T ss_pred CCCCCCCEEEeCCCCCCCCCCCCCccceEEEcCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCch
Confidence 8 89999999999999999999999999999999999995 679999999999999999998 88 9999999998
Q ss_pred ccccccccccC
Q 009384 525 YLSQSRTVRSF 535 (536)
Q Consensus 525 s~s~~~~~~~~ 535 (536)
+||+-|+|+
T Consensus 413 --a~s~~~~Qi 421 (511)
T 3hz6_A 413 --ARSEAWLRM 421 (511)
T ss_dssp --GGCHHHHHH
T ss_pred --hcCHHHHHH
Confidence 688888775
No 5
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=100.00 E-value=4.7e-76 Score=647.04 Aligned_cols=433 Identities=24% Similarity=0.421 Sum_probs=365.7
Q ss_pred CCeEEEEEccccceeEEEEcC-CCCEEEEEEeecc-----cc-cC------CCccccCHHHHHHHHHHHHHHHHHHcCCC
Q 009384 54 RSVFLGVDVGTGSARAGLFDE-SGKLLGSASSPIQ-----IW-KE------GDCIEQSSTDIWHAICAAVDSACSLANVD 120 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~-~g~i~~~~~~~~~-----~~-~~------~g~~eqd~~~~~~~i~~~l~~~~~~~~~~ 120 (536)
++|+||||+|||++|++|+|. +|+++++.+++++ .+ ++ +||+||||++||+++++++++++++.+++
T Consensus 4 ~~~~lgIDiGTts~Ka~l~d~~~G~i~~~~~~~~~~~~~~~~~p~~~~~~~~g~~eqdp~~~~~~~~~~i~~~l~~~~~~ 83 (572)
T 3jvp_A 4 TKYTIGVDYGTESGRAVLIDLSNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDYVEVLTTSVPAVMKESGVD 83 (572)
T ss_dssp -CEEEEEEECSSEEEEEEEETTTCCEEEEEEEECTTCCBSSBSTTSCCBCCTTCCEECHHHHHHHHTTHHHHHHHC---C
T ss_pred CCEEEEEecCCcceEEEEEECCCCeEEEEEEeccCCccccccCCccccCCCCCcEEECHHHHHHHHHHHHHHHHHHcCCC
Confidence 469999999999999999997 9999999999987 22 34 99999999999999999999999988777
Q ss_pred CCCEEEEEEcCC-CCeEEEcCCCCeeeecCC--CCCCcceeEEeccchHHHHHHHHcC----chhHHhhhCCCCCCCChH
Q 009384 121 GEEVKGVGFAAT-CSLVAVDADGSPVSVSWN--GDSRRNIIVWMDHRAVKQAEKINSR----NSPVLQYCGGAVSPEMQP 193 (536)
Q Consensus 121 ~~~I~aIgis~~-~~~v~vD~~G~pl~~~~~--~~~~~p~i~W~D~Ra~~~~~~l~~~----~~~~~~~tG~~~~~~~~~ 193 (536)
+.+|.+||||+| +++|+||++|+|+.+..+ .++..++|+|+|.|+.++++++++. .+.++++||+++++.+++
T Consensus 84 ~~~I~~Igis~q~~~~v~~D~~G~pl~~~~~~~~~p~~~ai~W~D~R~~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~ 163 (572)
T 3jvp_A 84 ADDVIGIGVDFTACTMLPVDEEGQPLCLLAQYKDNPHSWVKLWKHHAAQDKANAINEMAEKRGEAFLPRYGGKISSEWMI 163 (572)
T ss_dssp CSCEEEEEEEECSSCEEEECTTSCBGGGSSSTTSSGGGSEECTTCCTTHHHHHHHHHHHHHHTCTTGGGGTTCCCSSSHH
T ss_pred hhHEEEEEEecCCCcEEEECCCCCCCccCccccccccccceecCccchHHHHHHHHHhccccHHHHHHHhCCCCCchhHH
Confidence 889999999998 999999999999932111 1122238999999999999999764 257899999999999999
Q ss_pred HHHHHHHHhCchhHhhhceeecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCC-CHHHHHHcC
Q 009384 194 PKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGW-DDEFWEEIG 272 (536)
Q Consensus 194 ~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W-~~~ll~~~G 272 (536)
+||+||++|+||+|+++.+|++++|||.|+|||+.. ++.|+ |++|++ || ++++| |+++|+.+|
T Consensus 164 ~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~--------As~t~l------~d-~~~~W~~~ell~~~g 227 (572)
T 3jvp_A 164 AKVWQILDEAEDVYNRTDQFLEATDWIVSQMTGKIV-KNSCT--------AGYKAI------WH-KREGYPSNEFFKALD 227 (572)
T ss_dssp HHHHHHHHHHHHHHHHCSEEEEHHHHHHHHHHSSCC-EEHHH--------HHHHSC------CB-TTTBSCCHHHHHTTC
T ss_pred HHHHHHHHhCHHHHHHhheEecHHHHHHHHhcCCce-eehhh--------ccccce------eC-CCCCcCCHHHHHHhC
Confidence 999999999999999999999999999999999985 44443 456665 48 89999 999999998
Q ss_pred CCCc-ccccccccCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCe
Q 009384 273 LGDL-IDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHR 351 (536)
Q Consensus 273 i~~~-~~~~~p~l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~ 351 (536)
++.. +. ..+|+|+++++++++|+ |++++|+++||++|+||++|+||++|+++|+ |+.+|| +
T Consensus 228 ~~l~~i~--~~~L~p~i~~~~~~~G~-l~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~~g--------------~ 289 (572)
T 3jvp_A 228 PRLEHLT--TTKLRGDIVPLGERAGG-LLPEMAEKMGLNPGIAVAVGNVDAHAAVPAV-GVTTPG--------------K 289 (572)
T ss_dssp GGGTTST--TTTTCSCEECTTSEEEE-CCHHHHHHHTSCTTCEEECCEETTTTHHHHT-TCCSSE--------------E
T ss_pred cccccCC--HhHCCCccCCcCccccc-cCHHHHHHhCCCCCCeEEEeCchHHHHHhhC-CCCCCC--------------c
Confidence 4210 00 03443489999999997 9999999999999999999999999999999 777787 8
Q ss_pred EEEEecccceeeeeeccccccCCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHH
Q 009384 352 MVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNG 431 (536)
Q Consensus 352 ~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 431 (536)
+++++|||+++.++++++...++.+..+..+..++.|.++++++++|.+++||++.+... ++...++..+.+.|++|++
T Consensus 290 ~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~G~~~~W~~~~~~~~-~~~~~~~~~g~~~~~~l~~ 368 (572)
T 3jvp_A 290 LVMAMGTSICHMLLGEKEQEVEGMCGVVEDGIIPGYLGYEAGQSAVGDIFAWFVKHGVSA-ATFDEAQEKGVNVHALLEE 368 (572)
T ss_dssp EEEEESSSEEEEEEESSCCCCTTCSEEEETSSSTTSEEEEEEESCSHHHHHHHHHHTSBH-HHHHHHHHTTBCHHHHHHH
T ss_pred EEEEecchhheeeecCCCccCCCceeeccCccCCCcEEEeehhhhHHHHHHHHHHhccch-hhHHHHHhcCCCHHHHHHH
Confidence 999999999988888876655554443334456889999999999999999999998642 2222334456778999998
Q ss_pred HHHhhhhhcCCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 009384 432 TLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH 511 (536)
Q Consensus 432 ~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~ 511 (536)
++++ +|++++|++|+|||.|||+|+|||++||+|+|++..|++.|+ +||++|||||.+|++++.|++.
T Consensus 369 ~a~~---------~~~g~~gl~~lP~~~Ger~P~~d~~arg~~~Gl~~~~t~~~l---~RAvlEgia~~~r~~~~~l~~~ 436 (572)
T 3jvp_A 369 KASQ---------LRPGESGLLALDWWNGNRSILVDTELSGMLLGYTLQTKPEEI---YRALLEATAFGTRAIVDAFHGR 436 (572)
T ss_dssp HHTS---------SCTTSSCCEEECCTTCCCTTTCCSSCCEEEEEECTTCCHHHH---HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHh---------CCCCCCCeEeCCccCCCCCCCCCCCcCEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHc
Confidence 8876 458999999999999999999999999999999999999985 6799999999999999999988
Q ss_pred CCCccEEEEecccccc-cccccccC
Q 009384 512 GHKVREHIFHSVFYLS-QSRTVRSF 535 (536)
Q Consensus 512 g~~~~~I~~~GGgs~s-~~~~~~~~ 535 (536)
|.++++|+++||+ + ||+-|+|+
T Consensus 437 g~~~~~i~~~GGg--a~ks~~~~Qi 459 (572)
T 3jvp_A 437 GVEVHELYACGGL--PQKNHLLMQI 459 (572)
T ss_dssp TCCEEEEEEESSH--HHHCHHHHHH
T ss_pred CCCcCEEEEEcCc--hhhCHHHHHH
Confidence 9999999999997 6 77777765
No 6
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=100.00 E-value=2.7e-73 Score=614.02 Aligned_cols=403 Identities=23% Similarity=0.335 Sum_probs=346.2
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-C
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C 133 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~-~ 133 (536)
++||||+|||++|++|+|.+|++++..+.+++.+. ++||+|||+++||+++++++++++++.+ ..+|.+||||+| +
T Consensus 1 ~~lgiDiGtt~~k~~l~d~~g~~l~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~--~~~i~~Igis~~~~ 78 (484)
T 2itm_A 1 MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHS--LQDVKALGIAGQMH 78 (484)
T ss_dssp CEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHSC--CTTCCEEEEEECSS
T ss_pred CEEEEEecCcccEEEEECCCCCEEEEEEeccccccCCCCCEeECHHHHHHHHHHHHHHHHHhCC--ccceEEEEEcCCcC
Confidence 47999999999999999999999999999998655 8999999999999999999999988742 468999999998 9
Q ss_pred CeEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCchhHHhhhCCCCCCCChHHHHHHHHHhCchhHhhhcee
Q 009384 134 SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRW 213 (536)
Q Consensus 134 ~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~ 213 (536)
++|+||++|+|+ +|+|.|+|.|+.++++++++....++++||.++++.++++||+|+++|+|++|++++++
T Consensus 79 ~~v~~D~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~~~~~~~~ 149 (484)
T 2itm_A 79 GATLLDAQQRVL---------RPAILWNDGRCAQECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKV 149 (484)
T ss_dssp CBEEECTTCCBC---------SCEECTTCCTTHHHHHHHHHHCTTHHHHHSSCCCTTSHHHHHHHHHHHCHHHHTTCCEE
T ss_pred cEEEECCCcCCC---------cccceecccCcHHHHHHHHHhHHHHHHHhCCCCCcccHHHHHHHHHHhChHHHHHHhhe
Confidence 999999999999 89999999999999999987655677889999999999999999999999999999999
Q ss_pred ecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccccCccccCCCC
Q 009384 214 MDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 293 (536)
Q Consensus 214 l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l~~~i~~~g~ 293 (536)
++++|||.|+|||+.. ++.|+ ||+|++ ||+++++||+++|+.+||+..++ | +++++++
T Consensus 150 l~~~d~l~~~LTG~~~-td~s~--------As~t~l------~d~~~~~W~~~ll~~~gi~~~~l---p----~i~~~~~ 207 (484)
T 2itm_A 150 LLPKDYLRLRMTGEFA-SDMSD--------AAGTMW------LDVAKRDWSDVMLQACDLSRDQM---P----ALYEGSE 207 (484)
T ss_dssp ECHHHHHHHHHHSCCE-EEHHH--------HHTTTC------EETTTTEECHHHHHTTTCCGGGS---C----EEECTTS
T ss_pred eCcHHHHHHHHhCCce-eeHHH--------hhcccc------ccCCCCCcCHHHHHHcCCCHHHC---C----CccCCcc
Confidence 9999999999999875 44443 456665 48889999999999999998554 4 8999999
Q ss_pred cccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceeeeeeccccccC
Q 009384 294 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP 373 (536)
Q Consensus 294 ~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~~~~~~~~~ 373 (536)
++|+ |++++|+++||+ |+||++|+||++|+++|+ |+.+|| ++++++|||+++.++++++..++
T Consensus 208 ~~G~-~~~~~a~~~Gl~-g~pV~~g~~D~~aa~~g~-g~~~~g--------------~~~~s~GTs~~~~~~~~~~~~~~ 270 (484)
T 2itm_A 208 ITGA-LLPEVAKAWGMA-TVPVVAGGGDNAAGAVGV-GMVDAN--------------QAMLSLGTSGVYFAVSEGFLSKP 270 (484)
T ss_dssp EEEE-CCHHHHHHHTSC-CCEEECCEEHHHHHHHHH-TCCSTT--------------CEEEEESSSEEEEEECSSCCCCC
T ss_pred eeec-cCHHHHHHhCCC-CCeEEEEchHHHHHHHhC-CCCCCC--------------cEEEEccchheeEEecCCCccCc
Confidence 9997 999999999999 999999999999999999 777787 89999999999998888776554
Q ss_pred CccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCCCCCCCCeE
Q 009384 374 GVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIH 453 (536)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~ 453 (536)
......+.+..++.|+++++++++|.+++|+++.+.. ..|+.+++++++ +|+++++++
T Consensus 271 ~~~~~~~~~~~~g~~~~~~~~~~~G~~~~W~~~~~~~-------------~~~~~~~~~a~~---------~~~~~~gl~ 328 (484)
T 2itm_A 271 ESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTGL-------------SNVPALIAAAQQ---------ADESAEPVW 328 (484)
T ss_dssp SSSCEEEECSSTTCEEEEEEECCHHHHHHHHHHHTTC-------------CSHHHHHHHGGG---------CCTTSCCCE
T ss_pred ccceEEeecccCCeeeeeehhhhHHHHHHHHHHhcCc-------------ccHHHHHHHHhc---------CCCCCCCeE
Confidence 2211113345688999999999999999999987632 236666666654 457999999
Q ss_pred EccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecccccccccccc
Q 009384 454 VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTVR 533 (536)
Q Consensus 454 flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~~ 533 (536)
|+|||.|+|+|+|||++||.|+|++..|++.|+ +||++||+||.+|++++.|++.|.++++|+++||+ +||+-|+
T Consensus 329 ~lP~~~G~r~P~~~~~a~g~~~Gl~~~~~~~~~---~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~--a~s~~~~ 403 (484)
T 2itm_A 329 FLPYLSGERTPHNNPQAKGVFFGLTHQHGPNEL---ARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGG--ARSEYWR 403 (484)
T ss_dssp EEEEEC--------CCEEEEEEEEETTCCHHHH---HHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGG--GCCHHHH
T ss_pred EeCCCCCCCCCCCCCCCceEEEcCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEecc--ccCHHHH
Confidence 999999999999999999999999999999885 67999999999999999999888888999999998 5777777
Q ss_pred cC
Q 009384 534 SF 535 (536)
Q Consensus 534 ~~ 535 (536)
|+
T Consensus 404 Qi 405 (484)
T 2itm_A 404 QM 405 (484)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 7
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=100.00 E-value=6.8e-73 Score=613.51 Aligned_cols=404 Identities=16% Similarity=0.317 Sum_probs=348.7
Q ss_pred CCeEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
++|+||||+|||++|++|+|.+|+++++.+.+++.+. .+||+||||++||+++++++++++++.+++..+|.+|||++|
T Consensus 4 ~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~ 83 (506)
T 3h3n_X 4 KNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIRPEAIAGIGITNQ 83 (506)
T ss_dssp CCEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEEC
T ss_pred CCEEEEEEcCCCceEEEEECCCCCEEEEEEEecCccCCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhheEEEEeeCC
Confidence 4699999999999999999999999999999997654 899999999999999999999999988777789999999998
Q ss_pred -CCeEEEcCC-CCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHh
Q 009384 133 -CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS 208 (536)
Q Consensus 133 -~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~ 208 (536)
+++|+||++ |+|+ +|+|+|+|.|+.++++++++.. ++++++||+++++.++++||+|+++|+||+|+
T Consensus 84 ~~~~v~~D~~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~ 154 (506)
T 3h3n_X 84 RETTVVWDKTTGQPI---------ANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQE 154 (506)
T ss_dssp SSCBEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHTTCHHHHHHHHSCCCCTTSHHHHHHHHHHHSTTHHH
T ss_pred cccEEEEeCCCCeEC---------CCceEecCcchHHHHHHHHhccCHHHHHHHhCCCCCchhHHHHHHHHHHhCHHHHH
Confidence 999999998 9999 8999999999999999998874 68999999999999999999999999999999
Q ss_pred hhce----eecchhHHHhhhhCCc-ccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccc
Q 009384 209 MVFR----WMDLSDWLSYRATGDD-TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK 283 (536)
Q Consensus 209 ~~~~----~l~~~dyl~~~LTG~~-~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~ 283 (536)
++++ |++++|||.|+|||+. ..++.|+ ||+|+| ||+++++||+++|+.+|||+.++ |
T Consensus 155 ~~~~~~~~~~~~~dyl~~~LTG~~~~~td~s~--------As~t~l------~d~~~~~W~~~ll~~~gi~~~~L---P- 216 (506)
T 3h3n_X 155 KADNGELLFGTIDSWLVWKLTDGQVHVTDYSN--------ASRTML------YNIHKLEWDQEILDLLNIPSSML---P- 216 (506)
T ss_dssp HHHTTCEEEECHHHHHHHHHTTTSCCEEEHHH--------HHTTTS------EETTTTEECHHHHHHTTCCGGGC---C-
T ss_pred HHhcCCeEEecHHHHHHHHhcCCceeeeEHHH--------hhhhhC------eecCCCCcCHHHHHHcCcCHHHC---C-
Confidence 9986 7789999999999953 2355553 456665 48899999999999999998654 4
Q ss_pred cCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceee
Q 009384 284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM 363 (536)
Q Consensus 284 l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~ 363 (536)
+++++++++|+ +++++ ++| +|+||++|++|++|+++|+ |+.+|| ++++++|||+++.
T Consensus 217 ---~i~~~~~~~G~-~~~~~--~lg--~g~pV~~g~~D~~aa~~g~-g~~~~g--------------~~~~s~GTs~~~~ 273 (506)
T 3h3n_X 217 ---EVKSNSEVYGH-TRSYR--FYG--SEVPIAGMAGDQQAALFGQ-MAFEKG--------------MIKNTYGTGAFIV 273 (506)
T ss_dssp ---EEECSEEEEEE-CCGGG--TTT--CCCEEEEEEEHHHHHHHHT-TCCSTT--------------CEEEEESSSEEEE
T ss_pred ---ceecCCCccee-eChHH--hcC--CCCeEEEECCcHHHHHHhC-CCCCCC--------------cEEEEecchheee
Confidence 89999999997 99876 366 7999999999999999999 777787 8999999999877
Q ss_pred eeec-cccccC-CccccccccccCC--eEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhh
Q 009384 364 AVSR-NKLFIP-GVWGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHE 439 (536)
Q Consensus 364 ~~~~-~~~~~~-~~~~~~~~~~~~~--~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 439 (536)
+.+. ++..++ +.+..++ +..++ .|+++++++++|.+++|+++.+.. ...|+++++++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~g~~~~~G~~~~W~~~~~~~------------~~~~~~l~~~a~~---- 336 (506)
T 3h3n_X 274 MNTGEEPQLSDNDLLTTIG-YGINGKVYYALEGSIFVAGSAIQWLRDGLRM------------IETSPQSEELAAK---- 336 (506)
T ss_dssp EEEETCCCSCCTTSEEEEE-EEETTEEEEEEEEEECCSSHHHHHHHHTSCC------------CSSTTHHHHHHTT----
T ss_pred eecCCccccCCCceEEEee-eecCCCCEEEEecchhhHHHHHHHHHHHcCC------------CCcHHHHHHHHhc----
Confidence 6654 444433 3332222 23344 699999999999999999998742 1235667776654
Q ss_pred cCCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEE
Q 009384 440 RNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKVREH 518 (536)
Q Consensus 440 ~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~-~g~~~~~I 518 (536)
+|+ .++++|+|||.|+|+|+|||++||+|+|++..|++.|+ +||++|||||.+|++++.|++ .|.++++|
T Consensus 337 -----~~~-~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~r~~~~~l~~~~g~~~~~i 407 (506)
T 3h3n_X 337 -----AKG-DNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDF---VRATLQAVAYQSKDVIDTMKKDSGIDIPLL 407 (506)
T ss_dssp -----CCS-CSCCEEECCTTCBCTTTCBTTCCCEEECCCTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHCSCCCEE
T ss_pred -----CCC-CCceEEeccccCCCCCccCCCCCEEEEccCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 334 48999999999999999999999999999999999985 679999999999999999998 58899999
Q ss_pred EEecccccccccccccC
Q 009384 519 IFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 519 ~~~GGgs~s~~~~~~~~ 535 (536)
+++||+ +||+-|+|+
T Consensus 408 ~~~GGg--a~s~~~~Qi 422 (506)
T 3h3n_X 408 KVDGGA--AKNDLLMQF 422 (506)
T ss_dssp EEESGG--GGCHHHHHH
T ss_pred EEeccc--ccCHHHHHH
Confidence 999997 678888775
No 8
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=100.00 E-value=1.2e-72 Score=611.05 Aligned_cols=405 Identities=18% Similarity=0.323 Sum_probs=348.6
Q ss_pred CCCCeEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 009384 52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (536)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis 130 (536)
|. +|+||||+|||++|++|+|.+|+++++.+.+++... .+||+||||++||+++++++++++++.++++.+|.+|||+
T Consensus 4 M~-~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis 82 (501)
T 3g25_A 4 ME-KYILSIDQGTTSSRAILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVINENDVRADQIAGIGIT 82 (501)
T ss_dssp CC-CEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEE
T ss_pred cc-cEEEEEEeCccceEEEEEcCCCCEEEEEEeecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEE
Confidence 54 699999999999999999999999999999997654 8999999999999999999999999877777899999999
Q ss_pred CC-CCeEEEcCC-CCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchh
Q 009384 131 AT-CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQES 206 (536)
Q Consensus 131 ~~-~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~ 206 (536)
+| +++++||++ |+|+ +|+|.|+|.|+.++++++++.. ++++++||+++++.++++||+|+++|+||+
T Consensus 83 ~~~~~~v~~D~~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~ 153 (501)
T 3g25_A 83 NQRETTVVWDKHTGRPI---------YHAIVWQSRQTQSICSELKQQGYEQTFRDKTGLLLDPYFAGTKVKWILDNVEGA 153 (501)
T ss_dssp ECSSCEEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHTTCHHHHHHHHSCCSSTTSHHHHHHHHHHHSTTH
T ss_pred CCcCcEEEEECCCCeEC---------CCceeeccCChHHHHHHHHhccCHHHHHHHHCCCCCchhHHHHHHHHHHhCHHH
Confidence 98 999999998 9999 8999999999999999998864 789999999999999999999999999999
Q ss_pred Hhhhce----eecchhHHHhhhhCCc-ccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccc
Q 009384 207 WSMVFR----WMDLSDWLSYRATGDD-TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHH 281 (536)
Q Consensus 207 ~~~~~~----~l~~~dyl~~~LTG~~-~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~ 281 (536)
|+++++ |++++|||.|+|||+. ..++.|+ ||+|+| ||+++++|++++|+.+|||+.++
T Consensus 154 ~~~~~~~~~l~~~~~dyl~~~LTG~~~~~td~s~--------As~t~l------~d~~~~~W~~~ll~~~gi~~~~L--- 216 (501)
T 3g25_A 154 REKAENGDLLFGTIDTWLVWKLSGKAAHITDYSN--------ASRTLM------FNIHDLEWDDELLELLTVPKNML--- 216 (501)
T ss_dssp HHHHHTTCEEEEEHHHHHHHHHTTTSCCEEEHHH--------HTTSSS------EETTTTEECHHHHHHHTCCGGGC---
T ss_pred HHHHhcCCeEEecHHHHHHHHhcCCCeeeeeHHH--------hhcccC------eeCCCCCCCHHHHHHhCcCHHHC---
Confidence 999987 7789999999999942 2355553 455665 48899999999999999998654
Q ss_pred cccCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccce
Q 009384 282 AKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTC 361 (536)
Q Consensus 282 p~l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~ 361 (536)
| +++++++++|+ ++++. ++| +|+||++|++|++|+++|+ |+.+|| ++++++|||++
T Consensus 217 P----~i~~~~~~~G~-~~~~~--~~g--~g~pV~~g~~D~~aa~~g~-g~~~~g--------------~~~~s~GTs~~ 272 (501)
T 3g25_A 217 P----EVKASSEVYGK-TIDYH--FYG--QEVPIAGVAGDQQAALFGQ-ACFERG--------------DVKNTYGTGGF 272 (501)
T ss_dssp C----EEECSEEEEEE-CCGGG--TTT--CCCEEEEEEEHHHHHHHHT-TCCSTT--------------CEEEEESSSEE
T ss_pred C----ceecCCCceec-cchHH--hCC--CCCeEEEECccHHHHHHhC-CCCCCC--------------cEEEEccchhh
Confidence 4 89999999997 98763 445 7999999999999999999 777787 89999999998
Q ss_pred eeeeec-cccccC-CccccccccccCC--eEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhh
Q 009384 362 HMAVSR-NKLFIP-GVWGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMI 437 (536)
Q Consensus 362 ~~~~~~-~~~~~~-~~~~~~~~~~~~~--~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 437 (536)
+.+.+. +|..++ +.+.+++ +..++ .|.++++++++|.+++|+++.+.. ...|+++++++++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~------------~~~~~~l~~~a~~-- 337 (501)
T 3g25_A 273 MLMNTGDKAVKSESGLLTTIA-YGIDGKVNYALEGSIFVSGSAIQWLRDGLRM------------INSAPQSESYATR-- 337 (501)
T ss_dssp EEEECTTSCCCCSSSCEEEEE-EEETTEEEEEEEEEESCSTHHHHHHHHTSCC------------CSSGGGHHHHHTT--
T ss_pred eeeecCCccccCCCCeEEEee-EecCCccEEEEecccccHHHHHHHHHHHcCC------------CCcHHHHHHHHhh--
Confidence 877664 454443 3332232 33355 799999999999999999998742 1235667776654
Q ss_pred hhcCCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcc
Q 009384 438 HERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKVR 516 (536)
Q Consensus 438 ~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~-~g~~~~ 516 (536)
+|+ .++++|+|||.|+|+|+|||++||+|+|++..|++.|+ +||++|||||.+|++++.|++ .|.+++
T Consensus 338 -------~~~-~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~~~~~~~l~~~~g~~~~ 406 (501)
T 3g25_A 338 -------VDS-TEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHF---IRATLESLCYQTRDVMEAMSKDSGIDVQ 406 (501)
T ss_dssp -------SSC-CTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHSSCCCS
T ss_pred -------CCC-CCeEEEecccccCCCCCCCCCCCEEEEccCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 333 48999999999999999999999999999999999995 679999999999999999998 688999
Q ss_pred EEEEecccccccccccccC
Q 009384 517 EHIFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 517 ~I~~~GGgs~s~~~~~~~~ 535 (536)
+|+++||+ +||+-|+|+
T Consensus 407 ~i~~~GG~--aks~~~~Qi 423 (501)
T 3g25_A 407 SLRVDGGA--VKNNFIMQF 423 (501)
T ss_dssp EEEEESGG--GGCHHHHHH
T ss_pred EEEEecch--hcCHHHHHH
Confidence 99999997 688877765
No 9
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=100.00 E-value=1.9e-72 Score=611.42 Aligned_cols=403 Identities=19% Similarity=0.313 Sum_probs=342.5
Q ss_pred CCeEEEEEccccceeEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~-~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
++|+||||+|||++|++|+|.+|++++..+.+++.. +.+||+||||++||+++++++++++++.++++.+|.+|||++|
T Consensus 25 ~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~~~I~~Igis~~ 104 (520)
T 4e1j_A 25 GGYILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKSGITANDIAAIGITNQ 104 (520)
T ss_dssp SCEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEEC
T ss_pred hCeEEEEEeCCcceEEEEECCCCCEEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEeCC
Confidence 379999999999999999999999999999999764 4899999999999999999999999987777789999999998
Q ss_pred -CCeEEEc-CCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHh
Q 009384 133 -CSLVAVD-ADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS 208 (536)
Q Consensus 133 -~~~v~vD-~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~ 208 (536)
+++|+|| ++|+|+ +|+|.|+|.|+.++++++++.. ++++++||.++++.++++||+|+++|+||+|+
T Consensus 105 g~~~v~~D~~~G~~l---------~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~ 175 (520)
T 4e1j_A 105 RETVVVWDRETGKPI---------HNAIVWQDRRTAAFCDKLKKKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQV 175 (520)
T ss_dssp SSCEEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHTTCHHHHHHHHSSCSSTTSHHHHHHHHHHHSTTHHH
T ss_pred cceEEEEECCCCeEC---------ccccccccCCHHHHHHHHHhcccHHHHHHHHCCCCCchhHHHHHHHHHHcChHHHH
Confidence 9999999 589999 8999999999999999998874 67999999999999999999999999999999
Q ss_pred hhce----eecchhHHHhhhhCCc-ccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccc
Q 009384 209 MVFR----WMDLSDWLSYRATGDD-TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK 283 (536)
Q Consensus 209 ~~~~----~l~~~dyl~~~LTG~~-~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~ 283 (536)
++++ |++++|||.|+|||+. ..++.|+ ||+|+| ||+++++||+++|+.+||++.++ |
T Consensus 176 ~~~~~~~~~~~~~dyl~~~LTG~~~~~td~s~--------As~t~l------~d~~~~~W~~~ll~~~gi~~~~L---P- 237 (520)
T 4e1j_A 176 RAAKGELCFGTIDTFLIWRLTGGECFCTDATN--------ASRTLL------YNIAENAWDDELTEVLRVPKEML---P- 237 (520)
T ss_dssp HHHTTCEEEEEHHHHHHHHHTTTCCCEEEHHH--------HTTSSS------EETTTTEECHHHHHHHTCCGGGS---C-
T ss_pred HHhcCCeEecCHHHHHHHHhcCCCeeeecHHH--------hhhhcc------cccccCCCCHHHHHHcCCCHHHC---C-
Confidence 9975 6789999999999973 2355553 455665 48899999999999999998554 4
Q ss_pred cCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceee
Q 009384 284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM 363 (536)
Q Consensus 284 l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~ 363 (536)
+++++++++|+ ++++ ||++|+||++|++|++|+++|+ |+.+|| ++++++|||+++.
T Consensus 238 ---~i~~~~~~~G~-~~~~-----~l~~g~pV~~g~~D~~aa~~g~-g~~~~g--------------~~~~s~GTs~~~~ 293 (520)
T 4e1j_A 238 ---EVKDCAADFGV-TDPS-----LFGAAIPILGVAGDQQAATIGQ-ACFKPG--------------MLKSTYGTGCFAL 293 (520)
T ss_dssp ---EEECSBSCCCB-CCHH-----HHTSCCBEEEECCHHHHHHHHT-TCCSTT--------------CEEEEESSSEEEE
T ss_pred ---ceecCCCceee-eChh-----hCCCCCeEEEECCcHHHHHHhC-CCCCCC--------------cEEEEecCchheE
Confidence 79999999997 8864 4678999999999999999999 777787 8999999999887
Q ss_pred eee-ccccccC-Ccccccccccc-CCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhc
Q 009384 364 AVS-RNKLFIP-GVWGPFWSAMV-PKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHER 440 (536)
Q Consensus 364 ~~~-~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 440 (536)
+.+ ++|..++ +.+..+++... ++.|.++++++++|.+++|+++.+... ..|+++++++++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~------------~~~~~l~~~a~~----- 356 (520)
T 4e1j_A 294 LNTGKDMVRSKNRLLTTIAYRLDGETTYALEGSIFVAGAAVQWLRDGLKVI------------KAAPDTGSLAES----- 356 (520)
T ss_dssp EECTTCCCCCSSSCEEEEEEEETTEEEEEEEEEESCSHHHHHHHHHTTCCC-----------------CHHHHHT-----
T ss_pred EecCCccccCCCceeeEEeEecCCCceEEEcchHhhHHHHHHHHHHHcCCc------------ccHHHHHHHHhc-----
Confidence 777 5665544 33322322221 237999999999999999999987431 236667776654
Q ss_pred CCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCcc
Q 009384 441 NSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH----GHKVR 516 (536)
Q Consensus 441 ~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~----g~~~~ 516 (536)
+ +++++++|+|||.|+|+|+|||++||+|+|++..|++.|+ +||++|||||.+|++++.|++. | +++
T Consensus 357 ----~-~~~~gl~~lP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~r~~l~~l~~~~~~~g-~~~ 427 (520)
T 4e1j_A 357 ----A-DPSQEVYLVPAFTGLGAPHWDPDARGAIFGMTRNTGPAEF---ARAALEAVCYQTRDLLEAMHKDWRRNG-NDT 427 (520)
T ss_dssp ----S-CTTCCCEEECCTTCBCTTTCBTTCCCEEEEECTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHCC------C
T ss_pred ----C-CCCCcEEEEcCccCCCCCCCCCCCCEEEecccCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhccCC-Ccc
Confidence 2 3789999999999999999999999999999999999985 6799999999999999999886 7 889
Q ss_pred EEEEecccccccccccccC
Q 009384 517 EHIFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 517 ~I~~~GGgs~s~~~~~~~~ 535 (536)
+|+++||+ +||+-|+|+
T Consensus 428 ~i~~~GGg--aks~~~~Qi 444 (520)
T 4e1j_A 428 VLRVDGGM--VASDWTMQR 444 (520)
T ss_dssp CEEEESGG--GGCHHHHHH
T ss_pred eEEEeCcc--ccCHHHHHH
Confidence 99999997 688888775
No 10
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=100.00 E-value=8.8e-73 Score=612.97 Aligned_cols=405 Identities=18% Similarity=0.288 Sum_probs=348.1
Q ss_pred CCeEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
++|+||||+|||++|++|+|.+|+++++.+.+++... ++||+||||++||+++++++++++++.++++.+|.+|||++|
T Consensus 2 ~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~ 81 (510)
T 2p3r_A 2 KKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQ 81 (510)
T ss_dssp CCEEEEEEECSSEEEEEEECTTCCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEEC
T ss_pred CcEEEEEEcCCcceEEEEECCCCCEEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhheEEEEEeCC
Confidence 4689999999999999999999999999999997654 899999999999999999999999988777789999999998
Q ss_pred -CCeEEEcCC-CCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHh
Q 009384 133 -CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS 208 (536)
Q Consensus 133 -~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~ 208 (536)
+++|+||++ |+|+ +|+|+|+|.|+.++++++++.. ++++++||+++++.++++||+|+++|+||+|+
T Consensus 82 ~~~~v~~D~~~G~~l---------~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~ 152 (510)
T 2p3r_A 82 RETTIVWEKETGKPI---------YNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRE 152 (510)
T ss_dssp SSCBEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHTTCHHHHHHHHCCCSSTTSHHHHHHHHHHHSTTHHH
T ss_pred cCcEEEEECCCCeEC---------cccccccCccHHHHHHHHHhcccHHHHHHHhCCCCCcccHHHHHHHHHHcCHHHHH
Confidence 999999998 9999 8999999999999999998864 67999999999999999999999999999999
Q ss_pred hhce----eecchhHHHhhhhCCc-ccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccc
Q 009384 209 MVFR----WMDLSDWLSYRATGDD-TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK 283 (536)
Q Consensus 209 ~~~~----~l~~~dyl~~~LTG~~-~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~ 283 (536)
++++ |++++|||.|+|||+. ..++.|+ ||+|+| ||+++++||+++|+.+|||..++ |
T Consensus 153 ~~~~~~~l~~~~~dyl~~~LTG~~~~~td~s~--------As~t~l------~d~~~~~W~~~ll~~~gi~~~~L---P- 214 (510)
T 2p3r_A 153 RARRGELLFGTVDTWLIWKMTQGRVHVTDYTN--------ASRTML------FNIHTLDWDDKMLEVLDIPREML---P- 214 (510)
T ss_dssp HHHTTCEEEECHHHHHHHHHTTTSCCEEEHHH--------HHTTSS------EETTTTEECHHHHHHHTCCGGGC---C-
T ss_pred HHhcCCeEecCHHHHHHHHhcCCCeEEeehhH--------hhhhcc------ccCccCCCCHHHHHHhCCCHHHC---C-
Confidence 9988 7789999999999942 2355553 456665 48899999999999999998654 4
Q ss_pred cCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceee
Q 009384 284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM 363 (536)
Q Consensus 284 l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~ 363 (536)
+++++++++|+ +++ +.+| ++|+||++|++|++|+++|+ |+.+|| ++++++|||+++.
T Consensus 215 ---~i~~~~~~~G~-~~~---~~lG-~~g~pV~~g~~D~~aa~~g~-g~~~~g--------------~~~~s~GTs~~~~ 271 (510)
T 2p3r_A 215 ---EVRRSSEVYGQ-TNI---DGKG-GTRIPISGIAGDQQAALFGQ-LCVKEG--------------MAKNTYGTGCFML 271 (510)
T ss_dssp ---EEECSEEEEEE-ECT---TCTT-SCCEEEEEEEEHHHHHHHHT-TCCSTT--------------CEEEEESSSEEEE
T ss_pred ---ceecCCCceee-ech---hhcC-CCCCeEEEECchHHHHHHhc-CCCCCC--------------cEEEeecchheeE
Confidence 89999999997 875 3567 89999999999999999999 777787 8999999999766
Q ss_pred eee-ccccccC-Ccccccccccc-CCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhc
Q 009384 364 AVS-RNKLFIP-GVWGPFWSAMV-PKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHER 440 (536)
Q Consensus 364 ~~~-~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 440 (536)
+.+ +++..++ +.+..+++... ++.|+++++++++|.+++|+++.+... ..|+++++++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~------------~~~~~l~~~a~~----- 334 (510)
T 2p3r_A 272 MNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLI------------NDAYDSEYFATK----- 334 (510)
T ss_dssp EECTTCCCCCSSSCEEEEEECTTSCEEEEEEEEESCSHHHHHHHHHTSCCC------------CSSSCHHHHHTT-----
T ss_pred EecCCccccCCCCeeEEEeeecCCCceEEEccchhhHHHHHHHHHHHccCC------------CcHHHHHHHHhh-----
Confidence 655 4555444 33322322221 348999999999999999999987431 235556666654
Q ss_pred CCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEE
Q 009384 441 NSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKVREHI 519 (536)
Q Consensus 441 ~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~-g~~~~~I~ 519 (536)
+ ++++|++|+|||.|+|+|+||+++||+|+|++..|++.|+ +||++|||||.+|++++.|++. |.++++|+
T Consensus 335 ----~-~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~r~~~~~l~~~~g~~~~~i~ 406 (510)
T 2p3r_A 335 ----V-QNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHI---IRATLESIAYQTRDVLEAMQADSGIRLHALR 406 (510)
T ss_dssp ----S-SSCTTCEEECCTTCCBTTTCCTTCCEEEEEECTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCSEEE
T ss_pred ----C-CCCCceEEeCcccCCCCCCCCCCCCEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCccEEE
Confidence 2 3689999999999999999999999999999999999995 6699999999999999999984 88999999
Q ss_pred EecccccccccccccC
Q 009384 520 FHSVFYLSQSRTVRSF 535 (536)
Q Consensus 520 ~~GGgs~s~~~~~~~~ 535 (536)
++||+ +||+-|+|+
T Consensus 407 ~~GGg--a~s~~~~Qi 420 (510)
T 2p3r_A 407 VDGGA--VANNFLMQF 420 (510)
T ss_dssp EESGG--GGCHHHHHH
T ss_pred EeCch--hcCHHHHHH
Confidence 99997 688887775
No 11
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=100.00 E-value=2e-72 Score=612.66 Aligned_cols=405 Identities=18% Similarity=0.296 Sum_probs=345.7
Q ss_pred CCeEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
+||+||||+||||+|++|||.+|+++++.+.+++.+. ++||+||||++||+++++++++++++.++++.+|.+||||+|
T Consensus 3 kkYvlgID~GTss~Ka~l~d~~G~~va~~~~~~~~~~p~~G~~Eqdp~~~w~~~~~~i~~~l~~~~~~~~~I~aIgis~q 82 (526)
T 3ezw_A 3 KKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQ 82 (526)
T ss_dssp CCEEEEEEECSSEEEEEEECTTCCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEEC
T ss_pred ceEEEEEEccccceeeeEEcCCCCEEEEEEEecCcccCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhhEEEEEEeCC
Confidence 5899999999999999999999999999999998665 999999999999999999999999999888899999999998
Q ss_pred -CCeEEEcCC-CCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHh
Q 009384 133 -CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS 208 (536)
Q Consensus 133 -~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~ 208 (536)
+++|+||++ |+|+ +|+|+|+|+|+.++++++.+.. +.++++||+++++.++++||+|+++|+|++++
T Consensus 83 ~~~~v~~D~~~G~pl---------~~ai~W~D~R~~~~~~~l~~~~~~~~i~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~ 153 (526)
T 3ezw_A 83 RETTIVWEKETGKPI---------YNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRE 153 (526)
T ss_dssp SSCBEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHTTCHHHHHHHHCCCSSTTSHHHHHHHHHHHSTTHHH
T ss_pred CCCEEEEECCCCeEc---------ccceecCCcchHHHHHHHHhhccHHHHHHHhCCCCCcccHHHHHHHHHHcCchHHH
Confidence 999999975 9999 9999999999999999998875 67899999999999999999999999999999
Q ss_pred hhce----eecchhHHHhhhhCCcc-cccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccc
Q 009384 209 MVFR----WMDLSDWLSYRATGDDT-RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK 283 (536)
Q Consensus 209 ~~~~----~l~~~dyl~~~LTG~~~-~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~ 283 (536)
++++ +..+++||.|+|||... .++.|+ ||+|+| ||+++++|++++++.+||+..++ |
T Consensus 154 ~~~~~~~~~~~i~~~L~~~Lt~g~~~~td~s~--------As~t~l------~d~~~~~w~~~ll~~~gi~~~~L---P- 215 (526)
T 3ezw_A 154 RARRGELLFGTVDTWLIWKMTQGRVHVTDYTN--------ASRTML------FNIHTLDWDDKMLEVLDIPREML---P- 215 (526)
T ss_dssp HHHTTCEEEECHHHHHHHHHTTTSCCEEEHHH--------HTTSSS------EETTTTEECHHHHHHHTCCGGGC---C-
T ss_pred HHHHhhhhccchhHHHhhhhcCCCceEEEchh--------hccccC------cCccccCcCHHHHHHcCCCHHHC---C-
Confidence 9986 56678899999997543 455553 456665 48899999999999999998655 4
Q ss_pred cCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceee
Q 009384 284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM 363 (536)
Q Consensus 284 l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~ 363 (536)
+++++++++|+ ++++++ +..|+||++|++|++|+++|+ |+.+|| ++.+++|||+++.
T Consensus 216 ---~i~~~~~~~G~-~~~~~~----~~~gipV~~g~gD~~aa~~G~-g~~~~g--------------~~~~s~GTs~~~~ 272 (526)
T 3ezw_A 216 ---EVRRSSEVYGQ-TNIDGK----GGTRIPISGIAGDQQAALFGQ-LCVKEG--------------MAKNTYGTGCFML 272 (526)
T ss_dssp ---EEECSEEEEEE-ECTTCT----TSCCEEEEEEEEHHHHHHHHT-TCCSTT--------------CEEEEESSSEEEE
T ss_pred ---CccccccccCc-cchhhh----cCCCCcEEEEcchHHHHhhhc-cccccc--------------eeEEEeccCeeEe
Confidence 89999999997 887654 446789999999999999999 777787 8999999999998
Q ss_pred eeeccccccCC--cccc-ccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhc
Q 009384 364 AVSRNKLFIPG--VWGP-FWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHER 440 (536)
Q Consensus 364 ~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 440 (536)
+.++++...+. .... .+....++.|.++++++++|.+++||++.+..... .++ .+...+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~eg~~~~~G~~~~Wl~~~~~~~~~-----------~~~--~~~~~~----- 334 (526)
T 3ezw_A 273 MNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLIND-----------AYD--SEYFAT----- 334 (526)
T ss_dssp EECTTSCCCCSSSCEEEEEECTTSCEEEEEEEEESCSHHHHHHHHHTSCCCCS-----------SSC--HHHHHT-----
T ss_pred cccCCccccccccceeeeeeccCCcceeeeHHHHHHHHHHHHHHHHHhccccc-----------hhH--HHHHHh-----
Confidence 88877654442 2211 12223345799999999999999999998753211 000 111111
Q ss_pred CCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEEE
Q 009384 441 NSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKVREHI 519 (536)
Q Consensus 441 ~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~-~g~~~~~I~ 519 (536)
.+++++|++|+|||.|+|+|+|||++||+|+||+..|++.|+ +||++|||||.+|++++.|++ .|.++++|+
T Consensus 335 ----~~~~~~gl~~lP~~~G~r~P~~d~~arG~~~Glt~~~~~~~i---~RAvlEgia~~~r~~le~l~~~~g~~~~~i~ 407 (526)
T 3ezw_A 335 ----KVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHI---IRATLESIAYQTRDVLEAMQADSGIRLHALR 407 (526)
T ss_dssp ----TSSSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCSEEE
T ss_pred ----ccCCCCCeEEeCCCCCCCCCCCCcccCeEEecCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 236899999999999999999999999999999999999995 679999999999999999987 699999999
Q ss_pred EecccccccccccccC
Q 009384 520 FHSVFYLSQSRTVRSF 535 (536)
Q Consensus 520 ~~GGgs~s~~~~~~~~ 535 (536)
++||+ +||+-|+|+
T Consensus 408 v~GGg--aks~~~~Qi 421 (526)
T 3ezw_A 408 VDGGA--VANNFLMQF 421 (526)
T ss_dssp EESGG--GGCHHHHHH
T ss_pred EECch--hhCHHHHHH
Confidence 99998 688888775
No 12
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=100.00 E-value=5.2e-72 Score=606.61 Aligned_cols=394 Identities=19% Similarity=0.254 Sum_probs=345.4
Q ss_pred CCeEEEEEccccceeEEEEc-CCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 54 RSVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d-~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
++|+||||+|||++|++|+| ++|+++++.+.++ +||+||||++||++++++++++ +. ..+|.+|||++|
T Consensus 4 ~~~~lgIDiGtts~ka~l~d~~~G~i~~~~~~~~-----~g~~e~d~~~~~~~i~~~l~~~----~~-~~~I~~Igis~q 73 (515)
T 3i8b_A 4 RTLVAGVDTSTQSCKVRVTDAETGELVRFGQAKH-----PNGTSVDPSYWWSAFQEAAEQA----GG-LDDVSALAVGGQ 73 (515)
T ss_dssp SCEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-----CSSSEECTHHHHHHHHHHHHHT----TC-STTEEEEEEEEC
T ss_pred CcEEEEEEeccccEEEEEEECCCCeEEEEEEEeC-----CCCceECHHHHHHHHHHHHHhc----CC-ccCceEEEEeCC
Confidence 46999999999999999999 8999999998876 4899999999999988777653 33 478999999998
Q ss_pred -CCeEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc------------------hhHHhhhCCCCCCCChH
Q 009384 133 -CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN------------------SPVLQYCGGAVSPEMQP 193 (536)
Q Consensus 133 -~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~------------------~~~~~~tG~~~~~~~~~ 193 (536)
+++|+||++|+|+ +|+|+|+|.|+.++++++++.. ++++++||+++++.+++
T Consensus 74 ~~~~v~~D~~G~pl---------~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~ 144 (515)
T 3i8b_A 74 QHGMVILDNQGNVI---------RDAMLWNDTSSAPQAAALIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTL 144 (515)
T ss_dssp SSCBEEECTTSCBC---------SCEECTTCCTTHHHHHHHHHHHHCSCCCTTCCSSHHHHHHHHHHHHHSSCCCTTSHH
T ss_pred cceEEEECCCCCCc---------CCcceecCCCHHHHHHHHHHhcCcccccccccccccchhHHHHHHHHCCCCCchhHH
Confidence 9999999999999 9999999999999999997652 57899999999999999
Q ss_pred HHHHHHHHhCchhHhhhceeecchhHHHhhhhCCc------------ccccccccccccccccchhhccccccccCCcCC
Q 009384 194 PKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDD------------TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEAC 261 (536)
Q Consensus 194 ~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~------------~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~ 261 (536)
+||+|+++|+||+|+++.++++++|||.|+|||+. ..++.|+ ||+|++ ||++++
T Consensus 145 ~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~~~~~td~s~--------As~t~l------~d~~~~ 210 (515)
T 3i8b_A 145 TKVAWVAENEPENVKKIAAICLPHDWLSWRIAGYGPVAEGEDAHLEALFTDRSD--------ASGTIY------YDAASN 210 (515)
T ss_dssp HHHHHHHHHCHHHHTTCSEEECHHHHHHHHHTTCCCCCTTSCCCGGGCEEEHHH--------HTTSSS------EETTTT
T ss_pred HHHHHHHHcChHHHHHHheecCHHHHHHHHhcCCCcccccccccccceeecHHH--------hhcccC------eeCCcC
Confidence 99999999999999999999999999999999982 1344443 456665 488999
Q ss_pred CCCHHHHHHc-CCC-----------CcccccccccCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhcc
Q 009384 262 GWDDEFWEEI-GLG-----------DLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGV 329 (536)
Q Consensus 262 ~W~~~ll~~~-Gi~-----------~~~~~~~p~l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~ 329 (536)
+|++++|+.+ ||+ ..++ | +++++++++|+ |++++|+++||++|+||++|+||++|+++|+
T Consensus 211 ~W~~~ll~~~~gi~~~~~~~~~~~~~~~L---P----~i~~~~~~~G~-v~~~~A~~~Gl~~g~pV~~g~~D~~aa~lG~ 282 (515)
T 3i8b_A 211 EYRRDLIAMVLEAAEGAKAAQSHAEAIVL---P----TVLGPRDAAPV-KADPAIAGKNVEGGCLLAPGGGDNAMASLGL 282 (515)
T ss_dssp EECHHHHHHHHHHHHCHHHHHHHHHHSBC---C----EEECTTCCCSS-CCCTTTTTTTSTTCCEECCCEEHHHHHHHHT
T ss_pred ccCHHHHHhhcCCCcccccccccchHHHC---C----CCcCCcCcccC-cCHHHHHHhCCCCCCeEEEECchHHHHHhhC
Confidence 9999999998 997 4333 4 79999999998 9999999999999999999999999999999
Q ss_pred ccccCCcchhhhhhhhhhccCeEEEEecccceeeeeeccccccCC-ccccccccccCCeEEEchhhhhhhHHHHHHHHhh
Q 009384 330 MESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPG-VWGPFWSAMVPKFWLTEGGQSATGALLDYIIENH 408 (536)
Q Consensus 330 ~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~ 408 (536)
| .+|| ++++++|||+++.+++++|..++. .+..++ +. ++.|+.++++.++|.+++|+++.+
T Consensus 283 -g-~~~g--------------~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~~~~~~~~gg~~l~w~~~~~ 344 (515)
T 3i8b_A 283 -G-MAVG--------------DVSISLGTSGVAAAISENPTYDLTGAVSGFA-DC-TGHYLPLACTINGSRILDAGRAAL 344 (515)
T ss_dssp -T-CCTT--------------EEEEEESSSEEEEECBSSCCCCTTSCSEEEE-CS-SSSEEEEEEESCSTHHHHHHHHHH
T ss_pred -C-CCCC--------------cEEEEechhhhhhcccCccccCCCCcEEeee-cC-CCCEEEeeecccHHHHHHHHHHHh
Confidence 7 6687 899999999999999988877663 333332 22 778999999999999999999876
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCC-ChhHHH
Q 009384 409 VASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDS-SEKQLA 487 (536)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~-~~~~~~ 487 (536)
. . .|++|++++++ +|++++|++|+|||.|+|+|+| |++||.|+|++..| ++.|+
T Consensus 345 ~-------------~-~~~~l~~~a~~---------~~~g~~gl~~lP~~~Ger~P~~-~~arg~~~Gl~~~~~~~~~l- 399 (515)
T 3i8b_A 345 G-------------V-DYDELAKLAFA---------SKPGANGITLVPYFDGERTPNR-PNATATFSGMTLANTTRENL- 399 (515)
T ss_dssp T-------------C-CHHHHHHHHHH---------SCTTGGGCEEECCTTCBTTTTB-TTCCCEEESCCTTTCSHHHH-
T ss_pred C-------------C-CHHHHHHHHHh---------CCCCCCCeEEecCCCCCcCCCC-cCcceEEecCCCCCCCHHHH-
Confidence 3 1 37888888776 4578999999999999999976 99999999999999 99985
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecccccccccccccC
Q 009384 488 LLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 488 ~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~~~~ 535 (536)
+||++||+||.+|++++.|++.|.++++|+++||+ +||+-|+|+
T Consensus 400 --~RAvlEgia~~~r~~l~~l~~~g~~~~~i~~~GGg--aks~~~~Qi 443 (515)
T 3i8b_A 400 --ARAFVEGLLCSQRDCLELIRSLGASITRILLIGGG--AKSEAIRTL 443 (515)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESGG--GGCHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEECch--hcCHHHHHH
Confidence 67999999999999999999989999999999997 578888775
No 13
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=100.00 E-value=2.3e-70 Score=592.91 Aligned_cols=400 Identities=21% Similarity=0.303 Sum_probs=347.7
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT- 132 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~- 132 (536)
+|+||||+|||++|++|+|.+|+++++.+.+++... .+||+||||++||+++++++++++++.+++..+|.+||||+|
T Consensus 3 ~~~lgiDiGtt~~k~~l~d~~g~~~~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~i~~Igis~~~ 82 (497)
T 2zf5_O 3 KFVLSLDEGTTSARAIIFDRESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSARIEPNQIAAIGVTNQR 82 (497)
T ss_dssp CEEEEEEECSSEEEEEEECTTCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECS
T ss_pred cEEEEEecCCchhEEEEECCCCCEEEEEEeccceecCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCC
Confidence 589999999999999999999999999999997654 899999999999999999999999887776778999999998
Q ss_pred CCeEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc-hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhhhc
Q 009384 133 CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN-SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF 211 (536)
Q Consensus 133 ~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~-~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~ 211 (536)
+++|+||++|+|+ +|+|.|+|.|+.++++++.+.. ++++++||.++++.++++||+|+++|+|++|++++
T Consensus 83 ~~~v~~D~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~ 153 (497)
T 2zf5_O 83 ETTLVWDKDGKPL---------YNAIVWQCRRTAEMVEEIKREYGTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKAE 153 (497)
T ss_dssp SCEEEECTTCCBS---------SCEECTTCCTTHHHHHHHHHHHHHHHHHHHSSCCCTTSHHHHHHHHHHHSTTHHHHHH
T ss_pred CcEEEECCCCCCc---------ccceeecccCcHHHHHHHHhhhHHHHHHHhCCCCCchhHHHHHHHHHHcCHHHHHHHh
Confidence 9999999999999 8999999999999999987653 57899999999999999999999999999999998
Q ss_pred e----eecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccccCcc
Q 009384 212 R----WMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRS 287 (536)
Q Consensus 212 ~----~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l~~~ 287 (536)
+ |++++|||.|+|||+.. ++.|+ ||+|++ ||+++++||+++|+.+||+..++ | +
T Consensus 154 ~~~~~~~~~~d~l~~~LTG~~~-td~s~--------As~t~l------~d~~~~~W~~~ll~~~gi~~~~l---P----~ 211 (497)
T 2zf5_O 154 KGEVMFGTVDTFLIYRLTGEHV-TDYSN--------ASRTML------FNIKKLDWDDELLELFDIPESVL---P----E 211 (497)
T ss_dssp TTCCEEEEHHHHHHHHHHSCCE-EEHHH--------HTTSSS------EETTTTEECHHHHHHTTCCGGGC---C----E
T ss_pred cCCCEEEcHHHHHHHHHhCCee-eeHHH--------hhhhcC------ccCCCCCcCHHHHHHcCcCHHHC---C----C
Confidence 7 89999999999999874 45543 455665 48899999999999999998554 4 8
Q ss_pred ccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceeeeeec
Q 009384 288 VAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSR 367 (536)
Q Consensus 288 i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~~~ 367 (536)
++++++++|+ ++++ .+| +|+||++|++|++|+++|+ ++.+|| ++++++|||+++.+.++
T Consensus 212 i~~~~~~~G~-~~~~---~~g--~g~pV~~g~~D~~aa~~g~-g~~~~g--------------~~~~s~GTs~~~~~~~~ 270 (497)
T 2zf5_O 212 VRESSEVYGY-TKKE---LLG--AEIPVSGDAGDQQAALFGQ-AAFEAG--------------MVKATYGTGSFILVNTD 270 (497)
T ss_dssp EECSEEEEEE-CCHH---HHS--SCCEEEEEEEHHHHHHHHT-TCCSTT--------------CEEEEESSSEEEEEEEE
T ss_pred cCCCCCeeee-cCHH---HcC--CCCeEEEEccHHHHHHHhC-CCCCCC--------------cEEEEcchhheeeEECC
Confidence 9999999997 9986 588 8999999999999999999 777787 89999999999999888
Q ss_pred cccccC-CccccccccccCC--eEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCC
Q 009384 368 NKLFIP-GVWGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPF 444 (536)
Q Consensus 368 ~~~~~~-~~~~~~~~~~~~~--~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~ 444 (536)
+|..++ +....++ +..++ .|+++++++++|.+++|+++.+... ..|+++++++++
T Consensus 271 ~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~G~~~~w~~~~~~~~------------~~~~~l~~~a~~--------- 328 (497)
T 2zf5_O 271 KMVLYSDNLLTTIA-WGLNGRVSYALEGSIFVTGAAVQWLRDGIKII------------KHASETEELATK--------- 328 (497)
T ss_dssp TCCCCCTTSEEEEE-EEETTEEEEEEEEEESCSHHHHHHHHHTSCCC------------SCGGGHHHHHTT---------
T ss_pred CCccCCCCcEEEEE-EEcCCCCEEEEechhhhHHHHHHHHHHHhCCC------------CcHHHHHHHHhh---------
Confidence 876554 2232222 33344 7999999999999999999977421 235556666544
Q ss_pred CCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccc
Q 009384 445 VAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVF 524 (536)
Q Consensus 445 ~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGg 524 (536)
+ +++++++|+|||.|+|+|+||+++||+|+|++..|++.|+ +||++||+||.+|++++.|++.+ ++++|+++||+
T Consensus 329 ~-~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~ 403 (497)
T 2zf5_O 329 L-ESNEGVYFVPAFVGLGAPYWDQFARGIIIGITRGTGREHL---ARATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGA 403 (497)
T ss_dssp S-SSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHH---HHHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGG
T ss_pred C-CCCCceEEecCcCCCCCCCCCCCCCEEEEeCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCcc
Confidence 3 3688999999999999999999999999999999999995 56999999999999999998877 88999999998
Q ss_pred ccccccccccC
Q 009384 525 YLSQSRTVRSF 535 (536)
Q Consensus 525 s~s~~~~~~~~ 535 (536)
+||+-|+|+
T Consensus 404 --a~s~~~~Qi 412 (497)
T 2zf5_O 404 --TANDFLMQF 412 (497)
T ss_dssp --GGCHHHHHH
T ss_pred --ccCHHHHHH
Confidence 577777765
No 14
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=100.00 E-value=2.4e-70 Score=593.54 Aligned_cols=400 Identities=16% Similarity=0.251 Sum_probs=347.1
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEEcC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLA--NVDGEEVKGVGFAA 131 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~--~~~~~~I~aIgis~ 131 (536)
+|+||||+|||++|++|+|.+|+++++.+.+++... .+||.||||++||+++++++++++++. +++..+|.+|||++
T Consensus 4 ~~~lgIDiGtT~~k~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~~~i~~Igis~ 83 (503)
T 2w40_A 4 NVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVIIKCIGITN 83 (503)
T ss_dssp EEEEEEEECSSEEEEEEEETTCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEEEEEE
T ss_pred cEEEEEEeCCcceEEEEECCCCCEEEEEEEeeeeecCCCCcEEECHHHHHHHHHHHHHHHHHHhhcCCCccceEEEEEcC
Confidence 589999999999999999999999999999998654 899999999999999999999998875 55567899999999
Q ss_pred C-CCeEEEcCC-CCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhH
Q 009384 132 T-CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESW 207 (536)
Q Consensus 132 ~-~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~ 207 (536)
| +++++||++ |+|+ +|+|.|+|.|+.++++++.+.. ++++++||.++++.++++||+|+++|+|++|
T Consensus 84 ~~~~~~~~D~~~G~~l---------~~~i~w~D~r~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~ 154 (503)
T 2w40_A 84 QRETVIIWDRITGKPL---------YNAIVWLDTRVEELVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIK 154 (503)
T ss_dssp CSSCEEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHHSCHHHHHHHHSSCCCSSSHHHHHHHHHHHCHHHH
T ss_pred CcceEEEEECCCCcCC---------ccceeecccCcHHHHHHHHhccchHHHHHHhCCCCCcccHHHHHHHHHHhChHHH
Confidence 8 999999998 9999 8999999999999999998753 5789999999999999999999999999999
Q ss_pred hhhce----eecchhHHHhhhhCC-cccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCC-Ccccccc
Q 009384 208 SMVFR----WMDLSDWLSYRATGD-DTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLG-DLIDGHH 281 (536)
Q Consensus 208 ~~~~~----~l~~~dyl~~~LTG~-~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~-~~~~~~~ 281 (536)
+++++ |++++|||.|+|||+ .. ++.|+ ||+|++ ||+++++||+++|+.+||| +.++
T Consensus 155 ~~~~~~~~~~~~~~d~l~~~LTG~~~~-~d~s~--------As~t~l------~d~~~~~W~~~ll~~~gi~~~~~l--- 216 (503)
T 2w40_A 155 QKIDDGTAVIGNINTWLIFNLTKGNCY-TDVTN--------ASRTLL------MDINTLQWDEKMCKIFNITNMSVL--- 216 (503)
T ss_dssp HHHHTTCEEEEEHHHHHHHHHHTSCCE-EEHHH--------HTTTTC------BCTTTCSBCHHHHHHTTCCCGGGS---
T ss_pred HHHhcCCeEEECHHHHHHHHHcCCCcc-ccHHH--------hhhhcC------ccCCCCccCHHHHHHcCCChHHHC---
Confidence 99998 999999999999995 53 55553 455665 4899999999999999999 7554
Q ss_pred cccCccccCCCCcccCCccHHHHHHcCCCC--CCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEeccc
Q 009384 282 AKIGRSVAFPGHPLGSGLTPAAAKELGLVP--GTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTS 359 (536)
Q Consensus 282 p~l~~~i~~~g~~~G~~v~~~~a~~~GL~~--g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs 359 (536)
| +++++++++|+ |+++ .+| + |+||++|++|++|+++|+ |+.+|| ++++++|||
T Consensus 217 P----~i~~~~~~~G~-~~~~---~~g--~~~g~pV~~g~~D~~aa~~g~-g~~~~g--------------~~~~s~GTs 271 (503)
T 2w40_A 217 P----EIKSNCSNFGL-VKSE---HVP--DYLNIPITGCIGDQQSACIGQ-AIFDEG--------------EAKCTYGTG 271 (503)
T ss_dssp C----EEECSEEEEEE-CCCT---TSG--GGTTCEEEEEEEHHHHHHHHT-TCCSTT--------------CEEEEESSS
T ss_pred C----CccCCcCceee-ccHH---HcC--CCCCceEEEECchHHHHHHhC-CCCCCC--------------cEEEEechh
Confidence 4 89999999997 9876 577 7 999999999999999999 777787 899999999
Q ss_pred ceeeeeec-cccccCC-ccccccccccCC----eEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHH
Q 009384 360 TCHMAVSR-NKLFIPG-VWGPFWSAMVPK----FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTL 433 (536)
Q Consensus 360 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~----~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 433 (536)
+++.+.++ +|..++. .+..++ +..++ .|+++++++++|.+++||++ ++.. ..|+++++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~g~~~~~g~~~~w~~~-~~~~------------~~~~~l~~~a 337 (503)
T 2w40_A 272 VFLLINTGEKVVYSTCGLITTIC-YKFNDNDKPKYALEGSIGTAGSGVSWLLK-NKLI------------DDPSEASDIM 337 (503)
T ss_dssp EEEEEECTTSCCCCSSSCEEEEE-ECCSTTSCCEEEEEEEESCSHHHHHHHHH-TTSS------------SCGGGHHHHH
T ss_pred heeeeecCCccccCCCCceeEEE-eecCCCCCceEEEechhhhhHhHHHHHHH-hCCc------------CCHHHHHHHH
Confidence 99999886 4665542 222232 33444 89999999999999999999 7531 2356677776
Q ss_pred HhhhhhcCCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-CC
Q 009384 434 ESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HG 512 (536)
Q Consensus 434 ~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~-~g 512 (536)
++ + ++++|++|+|||.|+|+|+|||++||+|+|++..|++.|+ +||++|||||.+|++++.|++ .|
T Consensus 338 ~~---------~-~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~g 404 (503)
T 2w40_A 338 EK---------C-ENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHI---VRALLEGIAFQLNEIVDSLTSDMG 404 (503)
T ss_dssp HH---------C-CSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hh---------C-CCCCCEEEecCCCCCCCCCCCCCCcEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 65 3 2688999999999999999999999999999999999995 679999999999999999987 58
Q ss_pred CCc-cEEEEecccccccccccccC
Q 009384 513 HKV-REHIFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 513 ~~~-~~I~~~GGgs~s~~~~~~~~ 535 (536)
.++ ++|+++||+ +||+-|+|+
T Consensus 405 ~~~~~~i~~~GG~--a~s~~~~Q~ 426 (503)
T 2w40_A 405 IEMLHVLRCDGGM--TKNKPFMQF 426 (503)
T ss_dssp CSCCSCEEEESGG--GGCHHHHHH
T ss_pred CCccceEEEeCcc--ccCHHHHHH
Confidence 888 999999997 577877765
No 15
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=6.3e-70 Score=589.18 Aligned_cols=400 Identities=22% Similarity=0.317 Sum_probs=346.4
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT- 132 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~-~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~- 132 (536)
+|+||||+|||++|++|+|.+|+++++.+.+++.. +.+||+||||++||+++++++++++++.+++..+|.+|||++|
T Consensus 2 ~~~lgiDiGtT~~k~~l~d~~g~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~~Igis~~~ 81 (495)
T 2dpn_A 2 AFLLALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRRAGAEAGEVLALGITNQR 81 (495)
T ss_dssp -CEEEEEECSSEEEEEEECTTSCEEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEECS
T ss_pred cEEEEEeeCCcceEEEEECCCCCEEEEEEEeeceecCCCCcEeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEeCCC
Confidence 47999999999999999999999999999999754 4899999999999999999999999887766678999999998
Q ss_pred CCeEEEcCC-CCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhh
Q 009384 133 CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM 209 (536)
Q Consensus 133 ~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~ 209 (536)
|++++||++ |+|+ .|+|.|+|.|+.++++++.+.. +.++++||.++++.++++||+|+++|+|++|++
T Consensus 82 ~~~~~vD~~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~ 152 (495)
T 2dpn_A 82 ETTLLWDRKTGKPL---------HNAIVWQDRRTTPLCEALRAKGLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKAR 152 (495)
T ss_dssp SCBEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHTTCHHHHHHHTSCCSCTTSHHHHHHHHHHHSSSHHHH
T ss_pred ccEEEEECCCCcCC---------ccceeecccChHHHHHHHHhccchhHHHHHhCCCCCchhHHHHHHHHHHcCHHHHHH
Confidence 999999998 9999 8999999999999999998763 578999999999999999999999999999999
Q ss_pred hce----eecchhHHHhhhhC--CcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccc
Q 009384 210 VFR----WMDLSDWLSYRATG--DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK 283 (536)
Q Consensus 210 ~~~----~l~~~dyl~~~LTG--~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~ 283 (536)
+++ |++++|||.|+||| +.. ++.|+ ||+|++ ||+++++|++++|+.+||++.++ |
T Consensus 153 ~~~~~~~~~~~~d~l~~~LTG~~~~~-~d~s~--------As~t~l------~d~~~~~W~~~ll~~~gi~~~~l---P- 213 (495)
T 2dpn_A 153 AEGGGVAFGTVDTWLIWNLTGGKVHA-TDPTN--------ASRTLL------FNLHTLAWDPELLEALGIPAALL---P- 213 (495)
T ss_dssp HHHTCEEEECHHHHHHHHHTTTSCCE-ECHHH--------HTTSSS------EETTTTEECHHHHHHTTCCSTTC---C-
T ss_pred HhcCCcEEECHHHHHHHHhcCCCeEE-EehHH--------hHhhcC------ccCccCCcCHHHHHHcCCCHHHC---C-
Confidence 988 99999999999999 553 55553 455665 48899999999999999998654 4
Q ss_pred cCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccceee
Q 009384 284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM 363 (536)
Q Consensus 284 l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~ 363 (536)
+++++++++|+ ++++ .+| +|+||++|++|++|+++|+ ++.+|| ++++++|||+++.
T Consensus 214 ---~i~~~~~~~G~-~~~~---~~G--~g~pV~~g~~D~~aa~~g~-g~~~~g--------------~~~~s~GTs~~~~ 269 (495)
T 2dpn_A 214 ---EVRPSDGDFGE-TLPE---LLG--APVPIRGVLGDQQAALFGQ-AALGGG--------------EGKCTYGTGAFLL 269 (495)
T ss_dssp ---EECCTTSCCCB-CCHH---HHS--SCCBEEEEEEHHHHHHHHT-TCCSTT--------------CEEEEESSSEEEE
T ss_pred ---CccCCCCeeEe-ccHH---HcC--CCCeEEEECcHHHHHHHhC-CCCCCC--------------cEEEEccHhhhhh
Confidence 79999999997 9987 588 8999999999999999999 777787 8999999999998
Q ss_pred eeec-cccccC-CccccccccccCC--eEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhh
Q 009384 364 AVSR-NKLFIP-GVWGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHE 439 (536)
Q Consensus 364 ~~~~-~~~~~~-~~~~~~~~~~~~~--~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 439 (536)
+.++ +|..++ +....++ +..++ .|+++++++++|.+++|+++ ++.. ..|+++++++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~g~~~~w~~~-~~~~------------~~~~~l~~~a~~---- 331 (495)
T 2dpn_A 270 LNTGKRPVLSEKGLLATVA-WSLGGRATYALEGSLFVAGAAVGWLKE-VGLI------------RESAEVEALAAS---- 331 (495)
T ss_dssp EECTTSCCCCSSSCEEEEE-EEETTEEEEEEEEEESCSHHHHHHHHH-TTSS------------SSTTTHHHHHHT----
T ss_pred hhcCCccccCCCCceEEEE-EEcCCCCEEEEechHHhHHHHHHHHHH-cCCc------------cCHHHHHHHHhh----
Confidence 8885 465544 2222222 33344 79999999999999999999 7431 235667776654
Q ss_pred cCCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEE
Q 009384 440 RNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKVREH 518 (536)
Q Consensus 440 ~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~-~g~~~~~I 518 (536)
+ ++++|++|+|||.|+|+|+|||++||+|+|++..|++.|+ +||++||+||.+|++++.|++ .|.++++|
T Consensus 332 -----~-~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~~---~rAvlEgia~~~~~~~~~l~~~~g~~~~~i 402 (495)
T 2dpn_A 332 -----V-EDTGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHL---ARAALEGVAFQVRDVVLAMEEEAGVRLKVL 402 (495)
T ss_dssp -----C-SCCSSCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHH---HHHHHHHHHHHHHHHHHHHHTTTSCCCCCE
T ss_pred -----C-CCCCcEEEecCCCCCCCCCCCCCCceEEEecCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 2 3688999999999999999999999999999999999995 569999999999999999987 58888999
Q ss_pred EEecccccccccccccC
Q 009384 519 IFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 519 ~~~GGgs~s~~~~~~~~ 535 (536)
+++||+ +||+-|+|+
T Consensus 403 ~~~GG~--a~n~~~~q~ 417 (495)
T 2dpn_A 403 KADGGM--AQNRLFLKI 417 (495)
T ss_dssp EEESGG--GGCHHHHHH
T ss_pred EEeccc--ccCHHHHHH
Confidence 999997 677777765
No 16
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=100.00 E-value=3.6e-70 Score=592.17 Aligned_cols=401 Identities=20% Similarity=0.326 Sum_probs=347.0
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT- 132 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~- 132 (536)
+|+||||+|||++|++|+|.+|+++++.+.+++... .+||+||||++||+++++++++++++.+++..+|.+|||++|
T Consensus 2 ~~~lgiDiGtts~k~~l~d~~G~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~~Igis~~g 81 (504)
T 2d4w_A 2 DYVLAIDQGTTSSRAIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTRGNLTHEDIAAVGITNQR 81 (504)
T ss_dssp CEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECS
T ss_pred CEEEEEecCCcceEEEEECCCCCEEEEEEEecceecCCCCceeECHHHHHHHHHHHHHHHHHHcCCCcccEEEEEEeCCC
Confidence 489999999999999999999999999999998654 899999999999999999999999987766678999999998
Q ss_pred CCeEEEcCC-CCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhh
Q 009384 133 CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM 209 (536)
Q Consensus 133 ~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~ 209 (536)
+++|+||++ |+|+ .|+|.|+|.|+.++++++.+.. ++++++||.++++.++++||+|+++|+|++|++
T Consensus 82 ~~~v~vD~~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~ 152 (504)
T 2d4w_A 82 ETAVVWDKTTGKPV---------YNAIVWQDTRTQKIVDELGGDEGAEKYKSIVGLPLATYFSGPKIKWILDNVEGAREK 152 (504)
T ss_dssp SCBEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHCSSCGGGGHHHHSCCSCTTSHHHHHHHHHHHSTTHHHH
T ss_pred CeEEEEECCCCCCc---------cccceecccChHHHHHHHHhhcchHHHHHHhCCCCCchhHHHHHHHHHHcChhHHHH
Confidence 999999998 9999 8999999999999999998743 679999999999999999999999999999999
Q ss_pred hce----eecchhHHHhhhhC--C---cccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCccccc
Q 009384 210 VFR----WMDLSDWLSYRATG--D---DTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGH 280 (536)
Q Consensus 210 ~~~----~l~~~dyl~~~LTG--~---~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~ 280 (536)
+++ |++++|||.|+||| + .. ++.|+ ||+|++ ||+++++||+++|+.+||++.++
T Consensus 153 ~~~~~~~~~~~~d~l~~~LTG~~~~~~~~-~d~s~--------As~t~l------~d~~~~~W~~~ll~~~gi~~~~l-- 215 (504)
T 2d4w_A 153 AEKGDLLFGNTDTWVLWNMTGGTEGGVHV-TDVTN--------ASRTML------MDLDTLSWREDIAADMGIPLSML-- 215 (504)
T ss_dssp HHHTCEEEECHHHHHHHHHTTTTTTCCCE-EEHHH--------HTTTTC------EETTTTEECHHHHHHTTCCGGGS--
T ss_pred HhcCCeEEecHHHHHHHHhcCCCcCCcee-eehhh--------hhhhcC------ccCCCCccCHHHHHHhCCCHHHC--
Confidence 988 99999999999999 5 43 55553 456665 48899999999999999998554
Q ss_pred ccccCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEecccc
Q 009384 281 HAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTST 360 (536)
Q Consensus 281 ~p~l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~ 360 (536)
| +++++++++|+ |+++ +.+| + +||++|++|++|+++|+ ++.+|| ++++++|||+
T Consensus 216 -P----~i~~~~~~~G~-~~~~--~~~G--~-~pV~~g~~D~~aa~~g~-g~~~~g--------------~~~~s~GTs~ 269 (504)
T 2d4w_A 216 -P----DIRSSSEVYGH-GRPR--GLVP--G-VPIAGILGDQQAATFGQ-ACFEVG--------------QAKNTYGTGN 269 (504)
T ss_dssp -C----EEECSEEEEEE-CCTT--SSST--T-CEEEEEEEHHHHHHHHT-TCCSTT--------------EEEEEESSSE
T ss_pred -C----CccCCccceec-cchH--HhCC--C-CeEEEECCcHHHHHhhC-CCCCCC--------------cEEEEcchhh
Confidence 4 89999999997 9875 3577 6 99999999999999999 777787 8999999999
Q ss_pred eeeeeec-cccccC-CccccccccccCC---eEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHh
Q 009384 361 CHMAVSR-NKLFIP-GVWGPFWSAMVPK---FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLES 435 (536)
Q Consensus 361 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~---~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 435 (536)
++.+.++ +|..++ +....++ +..++ .|+++++++++|.+++|+++.+... ..|++|++++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~------------~~~~~l~~~a~~ 336 (504)
T 2d4w_A 270 FLLLNTGTEKVMSKNGLLTTVC-YKIGDAPAVYALEGSIAVTGSLVQWLRDNLGMF------------EDAPDVEWLAGK 336 (504)
T ss_dssp EEEEECTTSCCCCSSSCEEEEE-ECCTTSCCEEEEEEEESCSHHHHHHHHHTTCTT------------TTCSCTHHHHTT
T ss_pred eeeeecCCccccCCCCcEEEEE-EEcCCCCceEEEcchhhhHHHHHHHHHHHhCCC------------CCHHHHHHHHhh
Confidence 9998885 466554 3332222 33445 8999999999999999999987421 224556666554
Q ss_pred hhhhcCCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC
Q 009384 436 MIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK 514 (536)
Q Consensus 436 ~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~-~g~~ 514 (536)
+ ++++|++|+|||.|+|+|+|||++||+|+|++..|++.|+ +||++||+||.+|++++.|++ .|.+
T Consensus 337 ---------~-~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~g~~ 403 (504)
T 2d4w_A 337 ---------V-QDNGGAYFVPAFSGLFAPYWRPDARGALVGLTRYVNRNHI---ARAALEATAFQSREVVDAMNADSGVD 403 (504)
T ss_dssp ---------S-SSCTTCEEECTTCCCSTTTCCCCSCEEEEEECSSCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred ---------C-CCCCCEEEecCCCCCCCCCCCCCCCEEEEeCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2 3688999999999999999999999999999999999995 669999999999999999987 5888
Q ss_pred ccEEEEecccccccccccccC
Q 009384 515 VREHIFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 515 ~~~I~~~GGgs~s~~~~~~~~ 535 (536)
+++|+++||+ +||+-|+|+
T Consensus 404 ~~~i~~~GG~--a~s~~~~Qi 422 (504)
T 2d4w_A 404 LTELRVDGGM--VANELLMQF 422 (504)
T ss_dssp CCEEEEESGG--GGCHHHHHH
T ss_pred cceEEEeCCc--ccCHHHHHH
Confidence 9999999998 678877765
No 17
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=100.00 E-value=6.5e-70 Score=594.13 Aligned_cols=401 Identities=13% Similarity=0.068 Sum_probs=337.9
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeeccccc-----CCCc-------cccCHHHHHHHHHHHHHHHHHHcCCCCC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-----EGDC-------IEQSSTDIWHAICAAVDSACSLANVDGE 122 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~-----~~g~-------~eqd~~~~~~~i~~~l~~~~~~~~~~~~ 122 (536)
+|+||||+|||++|++|||.+|+++++.+.+++.+. .+|| .||||+++|...+..+.+.+.+.++++.
T Consensus 10 ~~~lgID~GTts~Ka~l~d~~G~vv~~~~~~~~~~~p~~~~~~g~~e~~~g~~eqdp~~~w~~~~~~~~~~l~~~~~~~~ 89 (538)
T 4bc3_A 10 RCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDIILEKMKASGFDFS 89 (538)
T ss_dssp CEEEEEEECSSEEEEEEEETTCCEEEEEEEEHHHHSGGGCCBTTBEECTTSSCEEEEHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred CEEEEEEEcCcCEEEEEECCCCCEEEEEEEecCCcCCcccCCCCeeecCCCccccCcHHHHHHHHHHHHHHHHHcCCChH
Confidence 599999999999999999999999999999986432 2566 5688985444444555556677777778
Q ss_pred CEEEEEEcCC-CCeEEEcCCCC--------------------eeeecCCCCCCcceeEEeccchHHHHHHHHcCc---hh
Q 009384 123 EVKGVGFAAT-CSLVAVDADGS--------------------PVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN---SP 178 (536)
Q Consensus 123 ~I~aIgis~~-~~~v~vD~~G~--------------------pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~---~~ 178 (536)
+|.+||||+| |++|+||++|. |+ +|+|+|+|.|+.++++++++.. ++
T Consensus 90 ~I~aIgis~q~~~~v~~D~~g~~~l~~l~~~~~l~~~~~~~~pl---------~~ai~W~D~R~~~~~~~l~~~~~~~~~ 160 (538)
T 4bc3_A 90 QVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSI---------SDCPVWMDSSTTAQCRQLEAAVGGAQA 160 (538)
T ss_dssp GEEEEEEEECSSCEEEEETTHHHHHHTCCTTSCHHHHHTTCBSC---------SEEECTTCCCCHHHHHHHHHHHTSHHH
T ss_pred HeEEEEecccceeEEEECCCccccccccccccchhhhccccccc---------cCCcccccCcHHHHHHHHHHhhCcHHH
Confidence 9999999998 99999999964 66 9999999999999999998752 67
Q ss_pred HHhhhCCCCCCCChHHHHHHHHHhCchhHhhhceeecchhHHHhhhhCCcccccccccccccccccchhhccccccccCC
Q 009384 179 VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDM 258 (536)
Q Consensus 179 ~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~ 258 (536)
++++||+++++.++++||+|+++|+||+|+++++|++++|||.|+|||+...++.|+ ||+|+| ||+
T Consensus 161 ~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~~~~~d~l~~~LTG~~~~td~s~--------As~t~l------~d~ 226 (538)
T 4bc3_A 161 LSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLGSYSPIDYSD--------GSGMNL------LQI 226 (538)
T ss_dssp HHHHHSSCCCTTSHHHHHHHHHHHCHHHHHTEEEEEEHHHHHHHHHHTSCCCCBHHH--------HTTSSC------EET
T ss_pred HHHHHCCCCccccHHHHHHHHHHcCHHHHHHhheEEcHHHHHHHHHhCCCcccccch--------hhcccc------ccc
Confidence 999999999999999999999999999999999999999999999999975456664 455665 488
Q ss_pred cCCCCCHHHHHHcCCC-CcccccccccCccccCCCCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhccccccCCcc
Q 009384 259 EACGWDDEFWEEIGLG-DLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESV 337 (536)
Q Consensus 259 ~~~~W~~~ll~~~Gi~-~~~~~~~p~l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg~~g~~~~g~ 337 (536)
++++|++++|+.+|++ ..++ | +++++++++|+ |++++|+++||++||||++|+||++|+++|+ + .+||
T Consensus 227 ~~~~W~~~ll~~~gi~~~~~L---P----~i~~~~~~~G~-l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-~-~~~g- 295 (538)
T 4bc3_A 227 QDKVWSQACLGACAPHLEEKL---S----PPVPSCSVVGA-ISSYYVQRYGFPPGCKVVAFTGDNPASLAGM-R-LEEG- 295 (538)
T ss_dssp TTTEECHHHHHHHCTTHHHHH---C----CCBCSSCEEEE-CCHHHHHHHCCCTTCEEECCEEHHHHHHHHT-T-CCTT-
T ss_pred ccCCCCHHHHHHhCccHHHHC---C----Ccccccccccc-cCHHHHHHhCCCCCCeEEEecccHHhhhhcc-c-cCCC-
Confidence 9999999999999998 5433 4 79999999997 9999999999999999999999999999998 7 4687
Q ss_pred hhhhhhhhhhccCeEEEEecccceeeeeeccccccCCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHH
Q 009384 338 SEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANR 417 (536)
Q Consensus 338 ~~~~~~~~~~~~~~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~ 417 (536)
++++++|||+++.+++++|..++... .+++...++.|+.+++++++|.+++|+++.+..
T Consensus 296 -------------~~~~s~GTs~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gg~~~~w~~~~~~~------- 354 (538)
T 4bc3_A 296 -------------DIAVSLGTSDTLFLWLQEPMPALEGH-IFCNPVDSQHYMALLCFKNGSLMREKIRNESVS------- 354 (538)
T ss_dssp -------------CEEEEESSSEEEEEEESSCCCCSSSE-EEEETTEEEEEEEEEEESSSHHHHHHHHHHHST-------
T ss_pred -------------cEEEEeccchheEEecCCCCCCCCcc-eEEeecCCCCEEEeehhhccchHHHHHHHHhcC-------
Confidence 89999999999999999887666432 233333345799999999999999999987631
Q ss_pred HhhcCCCHHHHHHHHHHhhhhhcCCCCCCCCCCCeEEccccCCCCCCCCCCCCcEEEE----c--CCCCCChhHHHHHHH
Q 009384 418 AASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIIC----G--MTLDSSEKQLALLYL 491 (536)
Q Consensus 418 ~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~----G--l~~~~~~~~~~~~~r 491 (536)
..|++|++++++ +|++++|++|+|||.|||+|+ ++|.|. + ++. |++.| ++|
T Consensus 355 ------~~~~~l~~~a~~---------~~~g~~gl~~lp~~~Ger~P~----~~G~~~~~~~~~g~~~-~~~~~---l~R 411 (538)
T 4bc3_A 355 ------RSWSDFSKALQS---------TEMGNGGNLGFYFDVMEITPE----IIGRHRFNTENHKVAA-FPGDV---EVR 411 (538)
T ss_dssp ------TCHHHHHHHHHT---------SCTTGGGCEEEEESSCCSSSC----CCEEEEECTTSCEESC-CCHHH---HHH
T ss_pred ------CCHHHHHHHHhc---------CCCCCCCeEEeecCCCCcCCC----CCceeeeccccccccC-CCHHH---HHH
Confidence 358888888876 457999999999999999996 566665 2 332 67777 577
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecccccccccccccC
Q 009384 492 ATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 492 AvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~~~~ 535 (536)
|++|||||.+|++++.|++.+.++++|+++||+ +||+-|+|+
T Consensus 412 AvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGg--a~s~~~~Qi 453 (538)
T 4bc3_A 412 ALIEGQFMAKRIHAEGLGYRVMSKTKILATGGA--SHNREILQV 453 (538)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGG--GGCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcch--hcCHHHHHH
Confidence 999999999999999998777888999999998 578888775
No 18
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=100.00 E-value=2.2e-67 Score=564.92 Aligned_cols=389 Identities=13% Similarity=0.135 Sum_probs=315.7
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-C
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C 133 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~-~ 133 (536)
+|+||||+|||++|++|+|++|+++++.+.+++.++.+||+||||++||+++++++++++ + .+|.+||||+| +
T Consensus 6 ~~~lgIDiGTts~Ka~l~d~~G~i~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~-~-----~~I~aIgis~~~~ 79 (482)
T 3h6e_A 6 GATIVIDLGKTLSKVSLWDLDGRMLDRQVRPSIPLEIDGIRRLDAPDTGRWLLDVLSRYA-D-----HPVTTIVPVGHGA 79 (482)
T ss_dssp --CEEEEECSSEEEEEEECTTSCEEEEEEEECCCEESSSCEECCHHHHHHHHHHHHHHTT-T-----SCCCEEEEEECSS
T ss_pred ceEEEEEcCCCCeEEEEEECCCcEEEEEEecCCcccCCCceeECHHHHHHHHHHHHHHHH-h-----cCCCEEEEecCcC
Confidence 689999999999999999999999999999998767999999999999999999999886 3 57999999998 9
Q ss_pred CeEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCchhHHhhhCCCCCCC--ChHHHHHHHHHhCchhHhhhc
Q 009384 134 SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPE--MQPPKLLWVKENLQESWSMVF 211 (536)
Q Consensus 134 ~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~--~~~~kl~wl~~~~Pe~~~~~~ 211 (536)
++|+|| +|+|+ +|+|+|+|.|+.++++++.+... .|++||+++++. ++++||+|+++|+||+|++++
T Consensus 80 ~~v~~D-~G~pl---------~~ai~w~D~R~~~~~~~l~~~~~-~~~~tG~~~~~~~~~~~~kl~Wl~~~~Pe~~~~~~ 148 (482)
T 3h6e_A 80 GIAALT-DGRLA---------FPPLDYEQSIPEAVMADYRSQRD-PFARTGSPALPDGLNIGSQLWWLDQLHPDVMANAT 148 (482)
T ss_dssp CEEEEE-TTEEC---------SCCBCTTSCCCHHHHHHHHTTCC-CHHHHCCCCCSTTSSHHHHHHHHHHHSHHHHHSCE
T ss_pred CEEEEC-CCCEe---------ccccccCCcccHHHHHHHHhhCh-HHHHhCCCCCCCchhHHHHHHHHHHcCchhhhcCE
Confidence 999999 99999 99999999999999999987643 389999999997 899999999999999999999
Q ss_pred eeecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccccCccccCC
Q 009384 212 RWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 291 (536)
Q Consensus 212 ~~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~l~~~i~~~ 291 (536)
|++++|||.|+|||+.. ++.|++ ||+|+| ||+++++|+ ++|+.+||+ .++ | +++++
T Consensus 149 -~l~~~dyl~~~LTG~~~-td~s~~-------As~t~l------~d~~~~~W~-~ll~~~gi~-~~L---P----~v~~~ 204 (482)
T 3h6e_A 149 -LLPWAQYWAWFLTGRAV-SEVTSL-------GCHSDL------WDPQDGDFS-PMAKRLGWA-ARF---A----PIVRA 204 (482)
T ss_dssp -EEEHHHHHHHHTTSCCC-EEHHHH-------TTTCSS------EETTTTEEC-HHHHHTTCG-GGB---C----CEECT
T ss_pred -EEccHHHHHHHHhCCee-eecchh-------hhccCC------ccCCcCcHH-HHHHHcCCH-HhC---C----CCcCC
Confidence 99999999999999975 455431 345554 488999999 599999998 444 4 79999
Q ss_pred CCcccCCccHHHHHHcCCCCCCcEEeccchhHhhhhc---cccccCCcchhhhhhhhhhccCeEEEEecccceeeeeec-
Q 009384 292 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVG---VMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSR- 367 (536)
Q Consensus 292 g~~~G~~v~~~~a~~~GL~~g~pV~~g~~D~~aa~lg---~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~~~~~~- 367 (536)
++++|+ |++++|+++||++++||++|+||++|+++| + |+.+|| ..+++++|||.++....+
T Consensus 205 ~~~~G~-l~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~~g~-g~~~~g-------------~~~~~s~GT~~~~~~~~~~ 269 (482)
T 3h6e_A 205 GDTVGA-LLPAIAERTGLSPDVQVLAGLHDSNAALLAARGF-AEIADN-------------EATVLSTGTWFIAMRLPAT 269 (482)
T ss_dssp TSEEEE-CCHHHHHHHTCCTTCEEECCEEHHHHHHHHHTTS-TTTTTS-------------SEEEEECSSSEEEEEECSS
T ss_pred Cceeee-eCHHHHHHhCCCCCCEEEEeCcHHHHHHhhhhcc-CCcCCC-------------CEEEEECCceeEEEEecCc
Confidence 999997 999999999999999999999999999999 8 776676 136899999987655555
Q ss_pred --c-ccccCCccccccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCC
Q 009384 368 --N-KLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPF 444 (536)
Q Consensus 368 --~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~ 444 (536)
+ +..++.. ..++.. ....|.+++...++|.+++|+++......+. ...+. +..++.
T Consensus 270 ~~~~~~~~~~~-~~~~~~-~~~~~~~~g~~~~~G~~~~w~~~~~~~~~~~--------~~~~~--~~~a~~--------- 328 (482)
T 3h6e_A 270 PVDTATLPEAR-DCLVNV-DVHGRPVPSARFMGGREIETLIEIDTRRVDI--------KPDQP--ALLAAV--------- 328 (482)
T ss_dssp CCCGGGCCGGG-TEEEEE-CTTSCEEEEEEECHHHHHHHHHCSGGGCTTC--------GGGHH--HHHHTH---------
T ss_pred cCCccccchhh-ceeecc-ccccccccchhhhhHHHHHHHHHhccccccc--------ccchh--hHHHhc---------
Confidence 3 3333311 111111 1223556667778999999997543210000 01111 112222
Q ss_pred CCCCCCCeEEccccCCCCCCCCCCCCcEEEEcCCCCCChhHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCccEEEEec
Q 009384 445 VAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQG--IAYGTRHIVEHCNAHGHKVREHIFHS 522 (536)
Q Consensus 445 ~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEg--ia~~~r~~le~l~~~g~~~~~I~~~G 522 (536)
+|++++|++|+|||.|+|+|+||+ ||+|+|++. .| ++||++|+ |||.+|+++|.|++. ++|+++|
T Consensus 329 ~~~g~~Gl~flP~l~Ger~P~~d~--rG~~~Gl~~----~~---l~RA~lE~~Gia~~~r~~l~~~~~~----~~i~~~G 395 (482)
T 3h6e_A 329 PEVLRHGRMILPTLMRGFGPYPHG--RFAWINRPE----DW---FERRAAACLYAALVADTALDLIGST----GRILVEG 395 (482)
T ss_dssp HHHHHTTCEEESCSSTTCSSCTTC--CCEEESCCS----SH---HHHHHHHHHHHHHHHHHHHHHTTCC----SEEEEES
T ss_pred cccCCCCeEEecCCCCCCCCCCCC--ceEEeCCCH----HH---HHHHHHHHHhHHHHHHHHHHHhcCC----CeEEEeC
Confidence 235789999999999999999987 999999998 45 57899995 999999999998753 6899999
Q ss_pred ccccccccccccC
Q 009384 523 VFYLSQSRTVRSF 535 (536)
Q Consensus 523 Ggs~s~~~~~~~~ 535 (536)
|+ +||+-|+|+
T Consensus 396 G~--a~s~~w~Qi 406 (482)
T 3h6e_A 396 RF--AEADVFVRA 406 (482)
T ss_dssp GG--GGCHHHHHH
T ss_pred Cc--ccCHHHHHH
Confidence 97 678888775
No 19
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=100.00 E-value=7.9e-62 Score=525.41 Aligned_cols=393 Identities=15% Similarity=0.144 Sum_probs=319.6
Q ss_pred CCCCeEEEEEccccceeEEEEcCCCCEEEEEEeecc----c-ccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 009384 52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQ----I-WKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKG 126 (536)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~----~-~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~a 126 (536)
|.++++||||+|||++|++|+|.+|+++...+.++. . .+.+||+|||+++||+++.++++++... ..+|.+
T Consensus 1 m~~~~~lgiDiGtts~k~~l~d~~g~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~~~~~~~~----~~~i~~ 76 (489)
T 2uyt_A 1 MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCAA----GIAIDS 76 (489)
T ss_dssp -CCEEEEEEEECSSEEEEEEEEEEGGGTEEEEEEEEEEECCCEEETTEEECCHHHHHHHHHHHHHHHHHT----TCCCCE
T ss_pred CCcceEEEEEecCCCceEEEEEecCccceEEEEEEeecCCCccccCCeEEECHHHHHHHHHHHHHHHHhC----CCCceE
Confidence 666789999999999999999999998877665542 2 2378999999999999999999988652 357999
Q ss_pred EEEcCC-CCeEEEcCCCCeeeecCCCCCCcceeEEeccchHHHHHHHHcCc--hhHHhhhCCCCCCCChHHHHHHHHHhC
Q 009384 127 VGFAAT-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENL 203 (536)
Q Consensus 127 Igis~~-~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~ 203 (536)
||||+| |++++||++|+|+ +|+|.|+|.|+.++++++.+.. ++++++||+++++.++++||+|+++|+
T Consensus 77 Igis~q~~~~v~~D~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~ 147 (489)
T 2uyt_A 77 IGIDTWGVDFVLLDQQGQRV---------GLPVAYRDSRTNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQ 147 (489)
T ss_dssp EEEEECSSCEEEECTTSCEE---------SCCBCTTCGGGTTHHHHHHHHHCHHHHHHHHCCCCCTTSHHHHHHHHHHHC
T ss_pred EEEecCcccEEEECCCCCCc---------cCCccccCCccHHHHHHHHHhcCHHHHHHHhCCCCCCccHHHHHHHHHhcC
Confidence 999998 9999999999999 8999999999999999997653 579999999999999999999999999
Q ss_pred chhHhhhceeecchhHHHhhhhCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCCcccccccc
Q 009384 204 QESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK 283 (536)
Q Consensus 204 Pe~~~~~~~~l~~~dyl~~~LTG~~~~s~~s~~~~~~~~~a~~t~l~~~~~~~D~~~~~W~~~ll~~~Gi~~~~~~~~p~ 283 (536)
|++|++++++++++|||.|+|||+.. ++.|+ ||+|+|| |+++++||+++|+.+||++.++ |
T Consensus 148 P~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~--------As~t~l~------d~~~~~W~~~ll~~~gi~~~~l---P- 208 (489)
T 2uyt_A 148 PELIPHIAHALLMPDYFSYRLTGKMN-WEYTN--------ATTTQLV------NINSDDWDESLLAWSGANKAWF---G- 208 (489)
T ss_dssp GGGGGGCCEEEEHHHHHHHHHHSCCC-CBHHH--------HGGGTCE------ETTTTEECHHHHHHHTCCGGGS---C-
T ss_pred chHHHHhhhccCcHHHHHHHHhCCcc-ceehh--------hhhhccc------ccCcCccCHHHHHHcCCCHHHC---C-
Confidence 99999999999999999999999975 45443 4566654 8889999999999999998554 4
Q ss_pred cCccccCCCCcccCCccHHHHHHcCCCCCCcEEe-ccchhHhhhhccccccCCcchhhhhhhhhhccCeEEEEeccccee
Q 009384 284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGT-SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCH 362 (536)
Q Consensus 284 l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~pV~~-g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~s~GTs~~~ 362 (536)
+++++++++|+ ++.+ .| +|+||++ |+||++|+++|+ |+..+| ++++++|||+++
T Consensus 209 ---~i~~~~~~~G~-~~~~----~~--~g~pV~~~g~~D~~aa~~g~-g~~~~g--------------~~~~s~GTs~~~ 263 (489)
T 2uyt_A 209 ---RPTHPGNVIGH-WICP----QG--NEIPVVAVASHDTASAVIAS-PLNGSR--------------AAYLSSGTWSLM 263 (489)
T ss_dssp ---CCBCTTCEEEE-EECT----TC--CEEEEECCCCBHHHHHHHHS-CCCSTT--------------EEEEEESSSEEE
T ss_pred ---CccCCCcceee-eecc----cC--CCCcEEEECchHHHHHHhcC-CCCCCC--------------cEEEEEchHhhc
Confidence 79999999997 7632 23 7899998 889999999999 776676 899999999999
Q ss_pred eeeeccccccC-Cccc-cccccccCCeEEEchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhc
Q 009384 363 MAVSRNKLFIP-GVWG-PFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHER 440 (536)
Q Consensus 363 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 440 (536)
.+.++++..++ .... .++++..++.|..++.+.. .|+++.+.... +.+.|+.+.+.+ +
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~W~~~~~~~~~---------~~~~~~~l~~~a-~----- 323 (489)
T 2uyt_A 264 GFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMG-----LWLLQRVLQER---------QINDLPALIAAT-Q----- 323 (489)
T ss_dssp EEEESSCCCSHHHHHHTCEEECCGGGCEEEEEEECT-----THHHHHHHHHT---------TCCCHHHHHHHH-T-----
T ss_pred ccccCCCccCHHHHhhcceeecCCCCeEEEehhHhH-----HHHHHHhhccc---------chhhHHHHHHHh-c-----
Confidence 88888776543 2221 2333455788988877652 59988764210 123455554433 2
Q ss_pred CCCCCCCCCCCeEEccccCCCCCCCCCCC-----CcEEEEcCC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-CC
Q 009384 441 NSPFVAALTEDIHVLPDFHGNRSPIADPK-----SKGIICGMT--LDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HG 512 (536)
Q Consensus 441 ~~p~~~~g~~gl~flP~l~Ger~P~~d~~-----arg~f~Gl~--~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~-~g 512 (536)
++++.+ ++|+| ++.|+++|+ ++|.+.|+. ..|++.|+ +||++|||||.+|++++.|++ .|
T Consensus 324 ----~~~~~~-~l~~p----~~~~~~~p~~~~~~~~g~~~g~~~~~~~t~~~l---~RAvlEgia~~~r~~~~~l~~~~g 391 (489)
T 2uyt_A 324 ----ALPACR-FIINP----NDDRFINPDEMCSEIQAACREMAQPIPESDAEL---ARCIFDSLALLYADVLHELAQLRG 391 (489)
T ss_dssp ----TSCSSS-SCCCT----TSGGGSSCSCHHHHHHHHHHHTTCCCCCSHHHH---HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----cCCCcC-eeECC----CCCccCChhhhHHHHHHHHHhcCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 235665 44788 566788887 589998884 78888885 679999999999999999988 58
Q ss_pred CCccEEEEecccccccccccccC
Q 009384 513 HKVREHIFHSVFYLSQSRTVRSF 535 (536)
Q Consensus 513 ~~~~~I~~~GGgs~s~~~~~~~~ 535 (536)
.++++|+++||+ +||+-|+|+
T Consensus 392 ~~~~~i~~~GGg--aks~~~~Qi 412 (489)
T 2uyt_A 392 EDFSQLHIVGGG--CQNTLLNQL 412 (489)
T ss_dssp CCCSEEEEESGG--GGCHHHHHH
T ss_pred CCCCEEEEeCCh--hhhHHHHHH
Confidence 889999999998 678888775
No 20
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=98.61 E-value=1.3e-08 Score=106.59 Aligned_cols=117 Identities=12% Similarity=0.055 Sum_probs=81.3
Q ss_pred CCCCCCCCccccchhhhhhccCcchhccCCCCCCC----CCCeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCC
Q 009384 18 QKHRSSISPIYNTNRISYAAGGLLEMAYATAPPAR----SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGD 93 (536)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m----~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g 93 (536)
+..-+++++++.+..++.+.+.....+.|++|... +..|+||||+|+|++|++++|.+|+++...+.+++
T Consensus 44 ~~tv~~~v~~L~~~g~i~~~~~~~~~~~GR~~~~l~~~~~~~~~lgiDiG~t~i~~~l~d~~G~il~~~~~~~~------ 117 (406)
T 1z6r_A 44 PASITKIVHEMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA------ 117 (406)
T ss_dssp HHHHHHHHHHHHHHTSEEEC-------------CEEECCTTCEEEEEEEETTEEEEEEEETTCCEEEEEEEECC------
T ss_pred HHHHHHHHHHHHHCCcEEeecccCCCCCCCCCeEEEEcCCccEEEEEEEcCCEEEEEEEcCCCCEEEEEEecCC------
Confidence 34445677788888888887654225667666662 34689999999999999999999999988776653
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCCeEEEcCC-CCee
Q 009384 94 CIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAVDAD-GSPV 145 (536)
Q Consensus 94 ~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~~v~vD~~-G~pl 145 (536)
+++++++++.+.+.+++++++.+.+..+|.+|||+. ++ ++|.+ |..+
T Consensus 118 --~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~-pG--~vd~~~g~v~ 165 (406)
T 1z6r_A 118 --LKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITL-PG--IIDTENGIVH 165 (406)
T ss_dssp --SSCSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEEEE-SS--EEETTTTEEE
T ss_pred --CCCHHHHHHHHHHHHHHHHHhcCCCcCceeEEEEEe-ec--CEeCCCCEEe
Confidence 457888999999999999988765567899999953 33 55655 6554
No 21
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=98.60 E-value=3.1e-08 Score=104.55 Aligned_cols=128 Identities=11% Similarity=0.089 Sum_probs=95.8
Q ss_pred CCCCCCCCccccchhhhhhccCcchhccCCCCCCC----CCCeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCC
Q 009384 18 QKHRSSISPIYNTNRISYAAGGLLEMAYATAPPAR----SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGD 93 (536)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m----~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g 93 (536)
+..-+++++++.+..++.+.+...+.+.||+|... +..|+||||+|+|++|++++|.+|+++...+.+++
T Consensus 67 ~~tv~~~v~~L~~~gli~~~~~~~~s~~GR~~~~l~~~~~~~~~lGIDiGgt~i~~~l~d~~G~il~~~~~~~~------ 140 (429)
T 1z05_A 67 PASITKITRELIDAHLIHETTVQEAISRGRPAVGLQTNNLGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIH------ 140 (429)
T ss_dssp HHHHHHHHHHHHHTTSEEEECHHHHHHHTSCCEEEEECCTTEEEEEEEEETTEEEEEEEETTSCEEEEEEEECC------
T ss_pred HHHHHHHHHHHHHCCCEEeccccCCCCCCCCCeEEEECCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEEcCC------
Confidence 33445667778888888886512256667777652 34589999999999999999999999988777654
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCCeEEEcCC-CCeeeecCCCCCCcceeEEeccc
Q 009384 94 CIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHR 164 (536)
Q Consensus 94 ~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~R 164 (536)
.++++++++.+.+.+++++++.+....+|.+|||+ .++ ++|.+ |..+. .|.+.|.+-.
T Consensus 141 --~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~-~pG--~vd~~~g~v~~--------~~~l~w~~~~ 199 (429)
T 1z05_A 141 --EIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAIT-LPG--LVNSEQGIVLQ--------MPHYNVKNLA 199 (429)
T ss_dssp --CCBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEE-ESS--EEETTTTEEEE--------CSSSBCSSBC
T ss_pred --CCCHHHHHHHHHHHHHHHHHhcCCCcCceEEEEEe-ccC--cEeCCCCeEee--------cCCCCCCCCC
Confidence 24689999999999999998877666789999994 344 56765 76653 4566687643
No 22
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=98.59 E-value=1.7e-08 Score=104.71 Aligned_cols=128 Identities=14% Similarity=0.198 Sum_probs=92.3
Q ss_pred CCCCCCCCccccchhhhhhccCcchhccCCCCCCC----CCCeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCC
Q 009384 18 QKHRSSISPIYNTNRISYAAGGLLEMAYATAPPAR----SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGD 93 (536)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m----~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g 93 (536)
+..-+++++++.+..++.+.+.. +.+.||+|... +..|+||||+|+|++|++++|.+|+++...+.+++
T Consensus 47 ~~tv~~~v~~L~~~gli~~~~~~-~~~~GR~~~~l~~~~~~~~~lGIDiGgt~i~~~l~d~~G~vl~~~~~~~~------ 119 (380)
T 2hoe_A 47 KTTVGEIAKIFLEKGIVVEEKDS-PKGVGRPTKSLKISPNCAYVLGIEVTRDEIAACLIDASMNILAHEAHPLP------ 119 (380)
T ss_dssp HHHHHHHHHHHHHHTSEEEEECC-C----CCCEEEEECGGGCEEEEEEECSSEEEEEEEETTCCEEEEEEEECC------
T ss_pred HHHHHHHHHHHHHCCCEEeecCC-CCCCCCCceEEEEccCCCeEEEEEECCCEEEEEEECCCCCEEEEEEEccC------
Confidence 33445667778888888887654 56667777652 24689999999999999999999999988877765
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCCeEEEcC-CCCeeeecCCCCCCcceeEEeccc
Q 009384 94 CIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAVDA-DGSPVSVSWNGDSRRNIIVWMDHR 164 (536)
Q Consensus 94 ~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~~v~vD~-~G~pl~~~~~~~~~~p~i~W~D~R 164 (536)
.+++++++++.+.+.+++++++.+.+..+|.+|||+ .++ ++|. +|..+. .|.+.|.+-.
T Consensus 120 -~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~-~pG--~vd~~~g~v~~--------~~~l~w~~~~ 179 (380)
T 2hoe_A 120 -SQSDREETLNVMYRIIDRAKDMMEKLGSKLSALTVA-APG--PIDTERGIIID--------PRNFPLSQIP 179 (380)
T ss_dssp -SSCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEE-ESS--CEETTTTEECC--------CSSCTTBTSC
T ss_pred -CCCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEE-eec--cEECCCCEEec--------cCCCCCcCCC
Confidence 245799999999999999988765555789899984 344 4565 466553 4555676543
No 23
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=98.40 E-value=7e-07 Score=90.27 Aligned_cols=91 Identities=20% Similarity=0.359 Sum_probs=71.2
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (536)
+|+||||+|+|++|++++|.+|+++...+.+++. +++++++++.+.+.+++++++.+.+..+|.+|||+. ++
T Consensus 6 ~~~lgiDiggt~~~~~l~d~~g~il~~~~~~~~~-------~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~igi~~-pG 77 (326)
T 2qm1_A 6 KKIIGIDLGGTTIKFAILTTDGVVQQKWSIETNI-------LEDGKHIVPSIIESIRHRIDLYNMKKEDFVGIGMGT-PG 77 (326)
T ss_dssp CEEEEEEECSSEEEEEEEETTCCEEEEEEEECCC-------TTTTTTHHHHHHHHHHHHHHHTTCCGGGEEEEEEEE-SS
T ss_pred cEEEEEEECCCEEEEEEECCCCCEEEEEEEcCCC-------CCCHHHHHHHHHHHHHHHHHHcCCCccceeEEEEec-cc
Confidence 6899999999999999999999999888777652 357888999999999999988766567899999954 44
Q ss_pred eEEEcCC-CCeeeecCCCCCCcceeEEecc
Q 009384 135 LVAVDAD-GSPVSVSWNGDSRRNIIVWMDH 163 (536)
Q Consensus 135 ~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~ 163 (536)
++|.+ |..+. .|.+.|.+.
T Consensus 78 --~vd~~~g~v~~--------~~~l~w~~~ 97 (326)
T 2qm1_A 78 --SVDIEKGTVVG--------AYNLNWTTV 97 (326)
T ss_dssp --EEETTTTEEEC--------BGGGTBCSC
T ss_pred --ceeCCCCEEEe--------cCCCCccCC
Confidence 56754 65542 344567553
No 24
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=98.38 E-value=1.8e-07 Score=95.48 Aligned_cols=112 Identities=18% Similarity=0.198 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCC-CEEEE
Q 009384 49 PPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGE-EVKGV 127 (536)
Q Consensus 49 ~~~m~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~-~I~aI 127 (536)
|+.|. +|+||||+|+|++|++++|.+|+++...+.+.. .+.+++++++++.+.+.+++++++.+.... +|.+|
T Consensus 1 ~~~M~-~~~lgiDiGgt~~~~~l~d~~g~i~~~~~~~~~-----~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~i~gi 74 (347)
T 2ch5_A 1 PQFMA-AIYGGVEGGGTRSEVLLVSEDGKILAEADGLST-----NHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSL 74 (347)
T ss_dssp CCSSS-CEEEEEEECTTCEEEEEEETTSCEEEEEEECCC-----CHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEE
T ss_pred Ccccc-eEEEEEEcCccceEEEEEeCCCCEEEEEeCCCC-----CcccCCHHHHHHHHHHHHHHHHHhcCCCcccceeEE
Confidence 34565 599999999999999999999999987665321 123468999999999999999988776555 78888
Q ss_pred EEcCCCCeEEEcCC-CCeeeecCCCCC---CcceeEEeccchHHHH
Q 009384 128 GFAATCSLVAVDAD-GSPVSVSWNGDS---RRNIIVWMDHRAVKQA 169 (536)
Q Consensus 128 gis~~~~~v~vD~~-G~pl~~~~~~~~---~~p~i~W~D~Ra~~~~ 169 (536)
||+.. |. +|.+ +.++...++... ..|++..+|.++....
T Consensus 75 gi~~p-G~--vd~~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a 117 (347)
T 2ch5_A 75 GLSLS-GG--DQEDAGRILIEELRDRFPYLSESYLITTDAAGSIAT 117 (347)
T ss_dssp EEEET-TT--TCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHH
T ss_pred EEecc-CC--CchHHHHHHHHHHHHhcCCCCceEEEECcHHHHHHh
Confidence 88533 21 2221 222222222111 1588899999887765
No 25
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=98.19 E-value=4.3e-06 Score=84.51 Aligned_cols=88 Identities=28% Similarity=0.452 Sum_probs=68.2
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (536)
+|+||||+|+|++|++++|.+|+++.+.+.++ +++++++++.+.+.++++.++ .+|.+|||+ .++
T Consensus 2 ~~~lgiDiGgt~i~~~l~d~~G~i~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-----~~i~gigi~-~pG 66 (321)
T 3vgl_A 2 GLTIGVDIGGTKIAAGVVDEEGRILSTFKVAT---------PPTAEGIVDAICAAVAGASEG-----HDVEAVGIG-AAG 66 (321)
T ss_dssp CEEEEEEECSSEEEEEEECTTCCBCCCEEEEC---------CSSHHHHHHHHHHHHHHHHTT-----CCEEEEEEE-ESS
T ss_pred cEEEEEEECCCEEEEEEECCCCCEEEEEEeeC---------CCCHHHHHHHHHHHHHHHHhh-----cCceEEEEe-ccc
Confidence 58999999999999999999999998766665 247999999999999998753 479999994 344
Q ss_pred eEEEcCC-CCeeeecCCCCCCcceeEEeccchHH
Q 009384 135 LVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVK 167 (536)
Q Consensus 135 ~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~ 167 (536)
++|.+ |.... .|.+.|.+..-.+
T Consensus 67 --~vd~~~g~v~~--------~~~l~w~~~~l~~ 90 (321)
T 3vgl_A 67 --YVDDKRATVLF--------APNIDWRHEPLKD 90 (321)
T ss_dssp --EECTTSSCEEE--------CSSSCCEEECHHH
T ss_pred --cEeCCCCEEEe--------CCCCCCcCCCHHH
Confidence 67865 66553 5666787654333
No 26
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=98.17 E-value=2.4e-06 Score=87.11 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=61.8
Q ss_pred CCeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 009384 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (536)
..|+||||+|+|++|++++|.+|+++...+.+++ ++++++++.+.+.+++++++.+....+|.+|||+. +
T Consensus 29 ~~~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~---------~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gigi~~-p 98 (343)
T 2yhw_A 29 TLSALAVDLGGTNLRVAIVSMKGEIVKKYTQFNP---------KTYEERINLILQMCVEAAAEAVKLNCRILGVGIST-G 98 (343)
T ss_dssp EEEEEEEEECSSEEEEEEEETTSCEEEEEEEECC---------SSHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE-S
T ss_pred CcEEEEEEECCCEEEEEEECCCCcEEEEEEEcCC---------CCHHHHHHHHHHHHHHHHHhcccccCceEEEEEec-c
Confidence 3689999999999999999999999987766543 36888999999999998876543446799999953 3
Q ss_pred CeEEEcCC-CCee
Q 009384 134 SLVAVDAD-GSPV 145 (536)
Q Consensus 134 ~~v~vD~~-G~pl 145 (536)
+ ++|.+ |..+
T Consensus 99 G--~vd~~~g~v~ 109 (343)
T 2yhw_A 99 G--RVNPREGIVL 109 (343)
T ss_dssp S--EEETTTTEEE
T ss_pred c--CEeCCCCEEE
Confidence 3 55654 5544
No 27
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=98.07 E-value=1.3e-05 Score=80.24 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=56.2
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCE--EEEEE
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEV--KGVGF 129 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I--~aIgi 129 (536)
+|+||||+|+|++|++++|.+|+++...+.+.. . ..++++++++.+.+.+++++++.+.+..+| .+|||
T Consensus 11 ~~~lGiDiGgT~i~~~l~d~~G~il~~~~~~~~-----~-~~~~~~~~~~~l~~~i~~~l~~~~~~~~~i~~~~igi 81 (305)
T 1zc6_A 11 RYLIGVDGGGTGTRIRLHASDGTPLAMAEGGAS-----A-LSQGIAKSWQAVLSTLEAAFQQAGLPAAPASACAIGL 81 (305)
T ss_dssp CEEEEEEECSSCEEEEEEETTCCEEEEEEESCC-----C-GGGCHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEEE
T ss_pred CEEEEEEcCccceEEEEEcCCCCEEEEEeCCCC-----C-cccCHHHHHHHHHHHHHHHHHhcCCChhhhccceEEE
Confidence 589999999999999999999999987654321 1 236899999999999999998877666676 66766
No 28
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=98.05 E-value=7.3e-06 Score=82.80 Aligned_cols=92 Identities=18% Similarity=0.155 Sum_probs=68.3
Q ss_pred CCCeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 53 SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
+..|+||||+|+|++|++++|.+|+++...+.+++ ...+++++++.+.+.++++++. ..+|.+|||+.
T Consensus 17 ~~~~~lgidiggt~i~~~l~d~~g~il~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~~~----~~~i~gigi~~- 84 (321)
T 3r8e_A 17 FQGMILGIDVGGTSVKFGLVTPEGEIQNATRFMTA-------DWVNGIGFVESMKLEIGNFLKQ----YPIVKGVGIGW- 84 (321)
T ss_dssp --CCEEEEECCSSEEEEEEECTTCCEEEEEEEEHH-------HHHTTTCHHHHHHHHHHHHHHH----CTTCCEEEEEE-
T ss_pred cCcEEEEEEECCCEEEEEEEcCCCcEEEEEEEeCC-------CCCCHHHHHHHHHHHHHHHHhc----cCCeeEEEEEe-
Confidence 34689999999999999999999999998877765 2346788899999999888762 35788898843
Q ss_pred CCeEEEcC-CCCeeeecCCCCCCcceeE-EeccchH
Q 009384 133 CSLVAVDA-DGSPVSVSWNGDSRRNIIV-WMDHRAV 166 (536)
Q Consensus 133 ~~~v~vD~-~G~pl~~~~~~~~~~p~i~-W~D~Ra~ 166 (536)
++ ++|. +|..+. .|.+. |.+-.-.
T Consensus 85 pG--~vd~~~g~v~~--------~~~l~~w~~~~l~ 110 (321)
T 3r8e_A 85 PG--LVSLDRTKVIL--------LPNIPSVVNVPIV 110 (321)
T ss_dssp SS--EECTTSCCEEE--------BTTBCCCCSCCHH
T ss_pred cc--cEECCCCEEEe--------CCCCccccCCCHH
Confidence 44 5674 477664 45554 8775443
No 29
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=97.97 E-value=5e-06 Score=82.94 Aligned_cols=100 Identities=24% Similarity=0.256 Sum_probs=69.1
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCCe
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL 135 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~~ 135 (536)
|+||||+|+|++|++++|.+|+++...+.+++ ++.+++++++++.+.+.+++++++. -.-.+||+.+.
T Consensus 3 ~~lgiDiGgt~~~~~l~d~~g~i~~~~~~~~~-----~~~~~~~~~~~~~i~~~i~~~~~~~----~~~igi~~~G~--- 70 (299)
T 2e2o_A 3 IIVGVDAGGTKTKAVAYDCEGNFIGEGSSGPG-----NYHNVGLTRAIENIKEAVKIAAKGE----ADVVGMGVAGL--- 70 (299)
T ss_dssp CEEEEEECSSCEEEEEECTTSCEEEEEEESCC-----CHHHHCHHHHHHHHHHHHHHHHTSC----CSEEEEEETTC---
T ss_pred EEEEEEeCCCcEEEEEEcCCCCEEEEEeCCCC-----CcccCCHHHHHHHHHHHHHHHHhcC----CCEEEEEcCCC---
Confidence 79999999999999999999999987766653 2335689999999999999987642 12334444333
Q ss_pred EEEcCC-C-CeeeecCCCCCCcceeEEeccchHHHHHH
Q 009384 136 VAVDAD-G-SPVSVSWNGDSRRNIIVWMDHRAVKQAEK 171 (536)
Q Consensus 136 v~vD~~-G-~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~ 171 (536)
|.+ | .++...++. ...|++.++|.++....+.
T Consensus 71 ---~~~~~~~~l~~~l~~-~~~pv~v~ND~~aaa~~e~ 104 (299)
T 2e2o_A 71 ---DSKFDWENFTPLASL-IAPKVIIQHDGVIALFAET 104 (299)
T ss_dssp ---CSHHHHHHHHHHHTT-SSSEEEEEEHHHHHHHHHH
T ss_pred ---CchhHHHHHHHHHHh-CCCCEEEeCcHHHHHhhcc
Confidence 211 1 122222223 2368999999998776543
No 30
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=97.93 E-value=3.1e-05 Score=78.35 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=60.4
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (536)
.|+||||+|+|++|++++|.+|+++...+.+++ +.+++++++.+.+.++++.++.+ .+.+|||+ .++
T Consensus 24 ~~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~~----~~~gigi~-~pG 90 (327)
T 4db3_A 24 AMYYGFDVGGTKIEFGAFNEKLERVATERVPTP--------TDDYPLLLETIAGLVAKYDQEFA----CEGKIGLG-LPG 90 (327)
T ss_dssp CCEEEEEECSSEEEEEEECTTCCEEEEEEEECC--------TTCHHHHHHHHHHHHHHHHHHHT----SCCEEEEE-ESE
T ss_pred cEEEEEEECCCEEEEEEEeCCCcEEEEEEecCC--------CCCHHHHHHHHHHHHHHHHHhcC----CccEEEEE-eec
Confidence 379999999999999999999999988877765 23789999999999999887643 36778774 344
Q ss_pred eEEEcC-CCCee
Q 009384 135 LVAVDA-DGSPV 145 (536)
Q Consensus 135 ~v~vD~-~G~pl 145 (536)
++|. +|...
T Consensus 91 --~vd~~~g~v~ 100 (327)
T 4db3_A 91 --MEDADDATVL 100 (327)
T ss_dssp --EECTTTCCEE
T ss_pred --cEeCCCCEEE
Confidence 6785 47665
No 31
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=97.86 E-value=2.3e-05 Score=77.14 Aligned_cols=65 Identities=11% Similarity=0.179 Sum_probs=48.8
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
.++||||+|+|++|++|+|++|++++..+.+++. ||. +++.++++++.+ .+....+|.+|++|++
T Consensus 3 ~~~lGiD~Gst~~k~~l~d~~g~i~~~~~~~~~~---------~~~---~~~~~~l~~l~~-~~~~~~~i~~i~~TG~ 67 (270)
T 1hux_A 3 IYTLGIDVGSTASKCIILKDGKEIVAKSLVAVGT---------GTS---GPARSISEVLEN-AHMKKEDMAFTLATGY 67 (270)
T ss_dssp CEEEEEEECSSEEEEEEEETTTEEEEEEEEECCS---------SCC---HHHHHHHHHHHH-HTCCGGGCSEEEEEST
T ss_pred cEEEEEEeccceEEEEEEeCCCCEEEEEEecCCC---------CHH---HHHHHHHHHHHH-cCCChhHEEEEEEeCc
Confidence 4899999999999999999999999988777641 333 344556666644 2334567889999886
No 32
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=97.85 E-value=1.1e-05 Score=81.07 Aligned_cols=87 Identities=20% Similarity=0.199 Sum_probs=64.2
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (536)
.|+||||+|+|++|++++|.+|+++.+.+.+++ +.+++++++.+.+.+++++++.+ .+|.+|||+ .++
T Consensus 7 ~~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~~---~~i~gigi~-~pG 74 (310)
T 3htv_A 7 NVVAGVDMGATHIRFCLRTAEGETLHCEKKRTA--------EVIAPGLVSGIGEMIDEQLRRFN---ARCHGLVMG-FPA 74 (310)
T ss_dssp EEEEEEEECSSEEEEEEEETTSCEEEEEEEEHH--------HHHTTCHHHHHHHHHHHHHHHHT---EEEEEEEEE-ESS
T ss_pred CEEEEEEeCCCEEEEEEECCCCCEEEEEEecCc--------cccHHHHHHHHHHHHHHHHHhcC---CCeeEEEEe-ccc
Confidence 589999999999999999999999988776654 22345678888888888776643 368899984 344
Q ss_pred eEEEcCC-CCeeeecCCCCCCcceeEEecc
Q 009384 135 LVAVDAD-GSPVSVSWNGDSRRNIIVWMDH 163 (536)
Q Consensus 135 ~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~ 163 (536)
++|.+ |..+. .|.+.|.+.
T Consensus 75 --~vd~~~g~v~~--------~~~l~~~~~ 94 (310)
T 3htv_A 75 --LVSKDKRTIIS--------TPNLPLTAA 94 (310)
T ss_dssp --CBCTTSSCBCS--------CCSSSCCHH
T ss_pred --cEeCCCCEEEe--------CCCCCCccc
Confidence 56755 66553 566677653
No 33
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=97.74 E-value=3.5e-05 Score=77.11 Aligned_cols=66 Identities=15% Similarity=0.282 Sum_probs=47.1
Q ss_pred CCeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 009384 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (536)
+++++|||+|.|++|++++|.+|+++...+.+++ +++++++.+.+.+ ++ .+|.+|||+ .+
T Consensus 2 ~~~~lgiDiGgt~i~~~l~d~~G~il~~~~~~t~----------~~~~~l~~i~~~~----~~-----~~i~gigi~-~p 61 (302)
T 3epq_A 2 NAMLGGIEAGGTXFVCAVGREDGTIIDRIEFPTX----------MPDETIEXVIQYF----SQ-----FSLQAIGIG-SF 61 (302)
T ss_dssp -CCEEEEEECSSEEEEEEECTTSCEEEEEEEECC----------CHHHHHHHHHHHH----TT-----SCCSEEEEE-EC
T ss_pred CcEEEEEEECcceeEEEEEECCCcEEEEEEecCC----------ChHHHHHHHHHHh----cc-----CCceEEEEE-ec
Confidence 3689999999999999999999999987776653 4666665554443 22 368888884 34
Q ss_pred CeEEEcCC
Q 009384 134 SLVAVDAD 141 (536)
Q Consensus 134 ~~v~vD~~ 141 (536)
+ ++|.+
T Consensus 62 G--~vd~~ 67 (302)
T 3epq_A 62 G--PVDND 67 (302)
T ss_dssp S--SEECC
T ss_pred e--eeccc
Confidence 4 34543
No 34
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Probab=97.60 E-value=0.00012 Score=71.82 Aligned_cols=79 Identities=20% Similarity=0.354 Sum_probs=52.6
Q ss_pred CeEEEEEccccceeEEEEcCC-CCEEEE-EEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 55 SVFLGVDVGTGSARAGLFDES-GKLLGS-ASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~-g~i~~~-~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
.|+||||+|.|++|++++|.+ |+++.. .+.+++ ...+++++++.+.+.+++++++.+. ...+.+||| +.
T Consensus 12 ~~~lgidiggt~i~~~l~dl~~g~i~~~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~~~~~~-~~~~~~igi-~~ 82 (267)
T 1woq_A 12 APLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTP-------QPATPESVAEAVALVVAELSARPEA-PAAGSPVGV-TF 82 (267)
T ss_dssp CCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECC-------SSCCHHHHHHHHHHHHHHHHTSTTC-CCTTCCEEE-EE
T ss_pred CEEEEEEECCCEEEEEEEECCCCeEEEEEEecCCC-------ccCCHHHHHHHHHHHHHHHHHhccc-cCccceEEE-Ec
Confidence 479999999999999999976 777743 233433 1246888999999999888764321 123335555 22
Q ss_pred CCeEEEcCCCCee
Q 009384 133 CSLVAVDADGSPV 145 (536)
Q Consensus 133 ~~~v~vD~~G~pl 145 (536)
++.| | +|..+
T Consensus 83 pG~v--~-~g~v~ 92 (267)
T 1woq_A 83 PGII--Q-HGVVH 92 (267)
T ss_dssp SSCE--E-TTEEC
T ss_pred cceE--c-CCEEE
Confidence 5533 5 56654
No 35
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=97.59 E-value=0.00017 Score=71.77 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=51.7
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCCe
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL 135 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~~ 135 (536)
|+||||+|+|++|++++|.+|+++...+.+++ ..+++++++.+.+. +++ ..+|.+|||+ .++
T Consensus 5 ~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~--------~~~~~~~~~~i~~~----~~~----~~~i~gigi~-~pG- 66 (297)
T 4htl_A 5 KIAAFDIGGTALKMGVVLPHGEIILTKSAEIS--------GSDGDQILAEMKVF----LAE----NTDVTGIAVS-APG- 66 (297)
T ss_dssp CEEEEEECSSEEEEEEECTTSCEEEEEEEECS--------TTCHHHHHHHHHHH----HHT----CTTCCEEEEE-ESS-
T ss_pred EEEEEEeCCCeEEEEEECCCCCEEEEEEecCC--------CCCHHHHHHHHHHH----Hhh----cCCeeEEEEe-cCc-
Confidence 69999999999999999999999988777654 22456666554443 332 2478899984 344
Q ss_pred EEEcCC-CCeee
Q 009384 136 VAVDAD-GSPVS 146 (536)
Q Consensus 136 v~vD~~-G~pl~ 146 (536)
++|.+ |..+.
T Consensus 67 -~vd~~~g~v~~ 77 (297)
T 4htl_A 67 -YVNPKTGLITM 77 (297)
T ss_dssp -EECTTTCEEEE
T ss_pred -ceeCCCCEEEe
Confidence 66754 76653
No 36
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=97.52 E-value=9.1e-05 Score=74.03 Aligned_cols=75 Identities=25% Similarity=0.383 Sum_probs=54.7
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCCe
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL 135 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~~ 135 (536)
|+||||+|+|++|++++|.++ ++...+.+++ .++++++++.+.+.+++++++. ..+|.+|||+ .++
T Consensus 2 ~~lgiDiGgt~i~~~l~d~~~-~l~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~---~~~i~gigi~-~pG- 67 (302)
T 3vov_A 2 KVVGLDLGGTKIAAGVFDGKR-LLSKVVVPTP--------KEGGERVAEALAEAAERAEREA---GVRGEAIGLG-TPG- 67 (302)
T ss_dssp CEEEEEECSSEEEEEEECSSS-BSCCEEEECC--------SSCHHHHHHHHHHHHHHHHHHH---TCCCSSEEEE-ESS-
T ss_pred EEEEEEEcCCEEEEEEEeCCC-cEEEEEEcCC--------CCChHHHHHHHHHHHHHHHhhc---cCCceEEEEE-ecc-
Confidence 799999999999999999874 4555555554 2345889999999999988764 3568888884 344
Q ss_pred EEEcCC-CCee
Q 009384 136 VAVDAD-GSPV 145 (536)
Q Consensus 136 v~vD~~-G~pl 145 (536)
++|.+ |...
T Consensus 68 -~vd~~~g~v~ 77 (302)
T 3vov_A 68 -PLDFRRGVIR 77 (302)
T ss_dssp -CEETTTTEEC
T ss_pred -cEeCCCCEEE
Confidence 45654 5444
No 37
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=97.51 E-value=0.00024 Score=71.63 Aligned_cols=85 Identities=20% Similarity=0.328 Sum_probs=56.8
Q ss_pred CCCCCC---CCCCeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCC
Q 009384 46 ATAPPA---RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGE 122 (536)
Q Consensus 46 ~~~~~~---m~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~ 122 (536)
||+|.. ....++||||+|.|++|++++|.+|+++...+.+.+. .+++++++.+.+.++++..+.+
T Consensus 12 Gr~~~~l~~~~~~~~lgiDiGgt~i~~~l~d~~g~il~~~~~~~~~--------~~~~~~~~~i~~~i~~~~~~~~---- 79 (327)
T 2ap1_A 12 DLGTENLYFQSNAMYYGFDIGGTKIALGVFDSTRRLQWEKRVPTPH--------TSYSAFLDAVCELVEEADQRFG---- 79 (327)
T ss_dssp -----------CCEEEEEEECSSEEEEEEEETTCCEEEEEEEECCC--------SCHHHHHHHHHHHHHHHHHHHT----
T ss_pred CCCCceEEEcCCceEEEEEECCCEEEEEEEeCCCCEEEEEEecCCC--------CCHHHHHHHHHHHHHHHHHhcC----
Confidence 555554 2346899999999999999999999999887766541 2578888888899988876532
Q ss_pred CEEEEEEcCCCCeEEEcCC-CCee
Q 009384 123 EVKGVGFAATCSLVAVDAD-GSPV 145 (536)
Q Consensus 123 ~I~aIgis~~~~~v~vD~~-G~pl 145 (536)
.+.+|||+ .++ ++|.+ |..+
T Consensus 80 ~i~~igi~-~pG--~vd~~~g~v~ 100 (327)
T 2ap1_A 80 VKGSVGIG-IPG--MPETEDGTLY 100 (327)
T ss_dssp SCCEEEEE-ESS--BSCCTTSCCB
T ss_pred CccEEEEE-eee--eEECCCCEEE
Confidence 36667763 233 34554 5544
No 38
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=97.39 E-value=9.6e-05 Score=73.42 Aligned_cols=103 Identities=18% Similarity=0.114 Sum_probs=64.5
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCCe
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL 135 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~~ 135 (536)
++||||+|.|++|++++| +|+++...+.+... ...++++++++.+.+.+++++. .+..+|.+|||+. .+.
T Consensus 1 ~~lgiDiGGT~~~~~l~d-~g~il~~~~~~~~~-----~~~~~~~~~~~~i~~~i~~~~~---~~~~~i~~igig~-pG~ 70 (291)
T 1zbs_A 1 MILIGDSGSTKTDWCIAK-EGKSLGRFQTSGIN-----PFQQDRNEIDTALRSEVLPAIG---QKASSIRAVYFYG-AGC 70 (291)
T ss_dssp CEEEEEECSSEEEEEEEE-TTEEEEEEEEECCC-----TTTSCHHHHHHHHTTTTHHHHT---TSTTTCCEEEEEE-TTC
T ss_pred CEEEEEeCccceEEEEEe-CCeEEEEEECCCCC-----cccCCHHHHHHHHHHHHHHHhC---CCcccccEEEEEC-CCC
Confidence 479999999999999999 99999877654310 1123688888888888877542 2345677787743 333
Q ss_pred EEEcCCCCeeeecCCCCC-C-cceeEEeccchHHHHH
Q 009384 136 VAVDADGSPVSVSWNGDS-R-RNIIVWMDHRAVKQAE 170 (536)
Q Consensus 136 v~vD~~G~pl~~~~~~~~-~-~p~i~W~D~Ra~~~~~ 170 (536)
+ .+.+.++...++... . .|+..-+|.++....+
T Consensus 71 ~--~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aa~ge 105 (291)
T 1zbs_A 71 T--PAKAPMLNEALDSMLPHCDRIEVAGDMLGAARAL 105 (291)
T ss_dssp C--TTTHHHHHHHHHHHSTTCSEEEEECHHHHHHHHH
T ss_pred C--hHHHHHHHHHHHHhcCCCCcEEEeCcHHHHHHhh
Confidence 3 333434422222111 1 3666777777655443
No 39
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=97.34 E-value=0.00013 Score=75.11 Aligned_cols=101 Identities=16% Similarity=0.049 Sum_probs=69.3
Q ss_pred CCCCCCCccccchhhhhhccCcchhccCCCCCCCCCCeEEEEEccccceeEEEEcC----CCCEEEEEEeecccccCCCc
Q 009384 19 KHRSSISPIYNTNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGTGSARAGLFDE----SGKLLGSASSPIQIWKEGDC 94 (536)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~lgIDiGTtsiKa~l~d~----~g~i~~~~~~~~~~~~~~g~ 94 (536)
.-++.++.+++...++.+.+.. . |.++|+||||+|.|++|++++|. +|+++...+. ++.
T Consensus 3 ~~~~~~~~~l~~~~~~~e~~~~-~---------~~~~~~lgiDiGgt~i~~~l~d~~~~~~g~il~~~~~-~~~------ 65 (373)
T 2q2r_A 3 AGSHMNIKELSLHELCEELKTP-A---------WNAPLTFVGDVGGTSARMGFVREGKNDSVHACVTRYS-MKR------ 65 (373)
T ss_dssp TTCCEEEEECCHHHHHHHTTSG-G---------GCSCEEEEEEECSSEEEEEEEEECGGGCEEEEEEEEE-CTT------
T ss_pred CccchhHHHHHHHHHHHHhcCc-C---------CCCCeEEEEEEccccEEEEEEecccCCCccEEEEeee-cCC------
Confidence 4567888999999999996422 1 11358999999999999999998 8998876541 221
Q ss_pred cccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCCeEEEcCCCCee
Q 009384 95 IEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAVDADGSPV 145 (536)
Q Consensus 95 ~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~~v~vD~~G~pl 145 (536)
.+++.+.+.+.+.++++.... ..+|.+|||+ .+| ++|. |...
T Consensus 66 --~~~~~~~~~i~~~i~~~~~~~---~~~i~gigi~-~pG--~vd~-g~v~ 107 (373)
T 2q2r_A 66 --KDITEIIEFFNEIIELMPASV---MKRVKAGVIN-VPG--PVTG-GAVG 107 (373)
T ss_dssp --CBGGGHHHHHHHHHHHSCHHH---HTTEEEEEEE-ESS--CEET-TTEE
T ss_pred --CCHHHHHHHHHHHHHHHhhcc---cccccEEEEE-eec--cccC-CEEe
Confidence 256777777777776654321 2468888883 333 3454 5544
No 40
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=97.34 E-value=0.00031 Score=68.97 Aligned_cols=66 Identities=12% Similarity=0.196 Sum_probs=48.7
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (536)
.|+||||+|||++|++++|++++++.....+. |.. ++ . ..+.+++++++++....++..+++++..
T Consensus 1 M~~lGID~GsT~tk~av~d~~~~il~~~~~~~------g~~---~e-~---a~~vl~~~~~~a~~~~~~~~~~a~t~~~ 66 (276)
T 4ehu_A 1 MYTMGLDIGSTASKGVILKNGEDIVASETISS------GTG---TT-G---PSRVLEKLYGKTGLAREDIKKVVVTGYG 66 (276)
T ss_dssp CEEEEEEECSSCEEEEEEETTTEEEEEEEESC------CTT---SS-H---HHHHHHHHHHHHCCCGGGEEEEEEESTT
T ss_pred CeEEEEEcCccEEEEEEEECCCeEEEEEEecC------CCC---HH-H---HHHHHHHHHHHCCCcchhccccccCchH
Confidence 37999999999999999999999987655443 111 11 1 2346777778778777889999887653
No 41
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=97.26 E-value=0.00017 Score=74.06 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=53.9
Q ss_pred CCeEEEEEccccceeEEEEcCCCCEEEEE-EeecccccCCCccccCHHHHHHHHHH---HHHHHHHHcCCCCCCEEEEEE
Q 009384 54 RSVFLGVDVGTGSARAGLFDESGKLLGSA-SSPIQIWKEGDCIEQSSTDIWHAICA---AVDSACSLANVDGEEVKGVGF 129 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~i~~~~-~~~~~~~~~~g~~eqd~~~~~~~i~~---~l~~~~~~~~~~~~~I~aIgi 129 (536)
..++||||+|.|++|++++| +|+++... +.+++ .. +++++++.+.+ .++++++ .+|.+|||
T Consensus 8 ~~~~lgiDIGgt~i~~~l~d-~G~il~~~~~~~~~-------~~-~~~~~l~~i~~~~~~i~~~~~------~~i~gIGI 72 (366)
T 3mcp_A 8 NRIVMTLDAGGTNFVFSAIQ-GGKEIADPVVLPAC-------AD-CLDKCLGNLVEGFKAIQAGLP------EAPVAISF 72 (366)
T ss_dssp CCEEEEEECSSSEEEEEEEE-TTEECSCCEEEECC-------TT-CHHHHHHHHHHHHHHHHTTCS------SCCCEEEE
T ss_pred CCEEEEEEECcceEEEEEEE-CCEEEEEEEEEECC-------CC-CHHHHHHHHHHHHHHHHHHhh------cCCeEEEE
Confidence 46899999999999999999 99998766 55554 12 78888888777 4444321 57899999
Q ss_pred cCCCCeEEEcCC-CCee
Q 009384 130 AATCSLVAVDAD-GSPV 145 (536)
Q Consensus 130 s~~~~~v~vD~~-G~pl 145 (536)
+ .++ ++|.+ |...
T Consensus 73 a-vPG--~Vd~~~G~i~ 86 (366)
T 3mcp_A 73 A-FPG--PADYQAGIIG 86 (366)
T ss_dssp E-CCS--SEETTTTEEC
T ss_pred E-ecc--eEeCCCCEEE
Confidence 4 444 45654 6655
No 42
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=97.13 E-value=5.7e-05 Score=75.08 Aligned_cols=101 Identities=14% Similarity=0.048 Sum_probs=50.8
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCCe
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL 135 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~~ 135 (536)
++||||+|.|++|++++| +|+++...+.+.... ...+++++++.+.+.+++++. ..+|.+|||+. .++
T Consensus 1 ~~lgiDiGGT~i~~~l~d-~g~il~~~~~~~~~~-----~~~~~~~~~~~i~~~i~~~~~-----~~~i~~igig~-pG~ 68 (291)
T 1zxo_A 1 MILIADSGSTKTDWCVVL-NGAVIKRLGTKGINP-----FFQSEEEIQQKLTASLLPQLP-----EGKFNAVYFYG-AGC 68 (291)
T ss_dssp ---CEECCTTCEEEEEEC-SSSEEEEEEECCCCT-----TTSCSTTTTTTTTC------------------CEEEC-TTC
T ss_pred CEEEEEeccccEEEEEEc-CCeEEEEEECCCCCc-----ccCCHHHHHHHHHHHHHHhcC-----cccccEEEEEc-CCC
Confidence 479999999999999999 999998776543111 112344455555556655542 24577788843 343
Q ss_pred EEEcCCCCeeeecCCCCCC--cceeEEeccchHHHHH
Q 009384 136 VAVDADGSPVSVSWNGDSR--RNIIVWMDHRAVKQAE 170 (536)
Q Consensus 136 v~vD~~G~pl~~~~~~~~~--~p~i~W~D~Ra~~~~~ 170 (536)
+ .+.+.++...++.... .|+..-+|.++....+
T Consensus 69 ~--~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aalge 103 (291)
T 1zxo_A 69 T--PEKAPVLRRAIADSLPVIGNIKANSDMLAAAHGL 103 (291)
T ss_dssp C--TTTTHHHHHHHHHHSCCCSCCEEECSHHHHHHHT
T ss_pred C--HHHHHHHHHHHHHhcCCCceEEEECcHHHHHHhh
Confidence 3 3334444322222111 3677778877755443
No 43
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=97.10 E-value=0.0013 Score=69.38 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=53.5
Q ss_pred CCCCCeEEEEEccccceeEEEEcCCCCE---EEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC--EE
Q 009384 51 ARSRSVFLGVDVGTGSARAGLFDESGKL---LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEE--VK 125 (536)
Q Consensus 51 ~m~~~~~lgIDiGTtsiKa~l~d~~g~i---~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~--I~ 125 (536)
.-+...+||||+|+|++|++++|.+|++ +...+.++|... ..-+.+++++.+.+++++.+++.+....+ +.
T Consensus 57 G~E~G~~laiDlGGTnirv~lV~~~G~~~~~~~~~~~~ip~~~----~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~l 132 (457)
T 2yhx_A 57 GAQAGSFLAIVMGGGDLEVILISLAGRQESSIXASRSLAAAMS----TTAIPSDLWGNXAXSNAAFSSXEFSSXAGSVPL 132 (457)
T ss_dssp SCCCEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCTTTT----SCSCTHHHHHHHHHHHHHHHHHHTSSCSSCEEE
T ss_pred CCccceEEEEEeCCCeEEEEEEEeCCCeeEEEeeEEEEcCCcc----CCCCHHHHHHHHHHHHHHHHhhcccccccccce
Confidence 3345578999999999999999999988 444444444211 12267899999999999998864322222 45
Q ss_pred EEEEcC
Q 009384 126 GVGFAA 131 (536)
Q Consensus 126 aIgis~ 131 (536)
+|++|.
T Consensus 133 Gi~fs~ 138 (457)
T 2yhx_A 133 GFTFXE 138 (457)
T ss_dssp EEECCS
T ss_pred eeEEEE
Confidence 666644
No 44
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=97.06 E-value=0.0011 Score=65.25 Aligned_cols=53 Identities=21% Similarity=0.321 Sum_probs=42.9
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHH
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACS 115 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~ 115 (536)
++||||+|.|++|++++|.+|+++...+.+++. ..+++++++.+.+.++++++
T Consensus 2 ~~lgidiggt~~~~~l~d~~g~il~~~~~~~~~-------~~~~~~~~~~i~~~i~~~~~ 54 (289)
T 2aa4_A 2 TTLAIDIGGTKLAAALIGADGQIRDRRELPTPA-------SQTPEALRDALSALVSPLQA 54 (289)
T ss_dssp CEEEEEECSSEEEEEEECTTCCEEEEEEEECCS-------SCCHHHHHHHHHHHHTTTGG
T ss_pred eEEEEEeCCCEEEEEEECCCCCEEEEEEecCCC-------CCCHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999887776641 23578888888777776654
No 45
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=96.97 E-value=0.00018 Score=70.67 Aligned_cols=102 Identities=13% Similarity=0.079 Sum_probs=67.7
Q ss_pred EchhhhhhhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCCCCCCCCeEEccccCCCCCCCCCCC
Q 009384 390 TEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPK 469 (536)
Q Consensus 390 ~~g~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~ 469 (536)
+.-+...+|..++|+.+.+.. + ++++++++.+. . .|+..|+|++ +.
T Consensus 124 n~~ca~GtG~~le~~a~~lg~-------------~-~~el~~la~~~------------~-----~p~~~~~~c~---vf 169 (270)
T 1hux_A 124 NDKCAAGTGRFLDVMANILEV-------------K-VSDLAELGAKS------------T-----KRVAISSTCT---VF 169 (270)
T ss_dssp ESSCCTTSHHHHHHHHHHHTC-------------C-TTTHHHHHTTC------------C-----SCCCCCCCSH---HH
T ss_pred ccccchhhHHHHHHHHHHhCC-------------C-HHHHHHHHhhC------------C-----CCCCcccccc---hh
Confidence 333445568899999887632 1 44566655331 1 4666678876 34
Q ss_pred CcEEEEcCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccccccccccccc
Q 009384 470 SKGIICGMT-LDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTVRS 534 (536)
Q Consensus 470 arg~f~Gl~-~~~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~~~ 534 (536)
+++.++++. ..++++|+ +|+++|+|++.+..+ ++..+. .++|+++||+ ++++.|++
T Consensus 170 a~s~v~~l~~~g~~~~di---~~av~e~Va~~i~~~---~~~~~~-~~~i~~~GG~--a~n~~~~~ 226 (270)
T 1hux_A 170 AESEVISQLSKGTDKIDI---IAGIHRSVASRVIGL---ANRVGI-VKDVVMTGGV--AQNYGVRG 226 (270)
T ss_dssp HHHHHHHHHHTTCCHHHH---HHHHHHHHHHHHHHH---HHTTCC-CSSEEEESGG--GGCHHHHH
T ss_pred HhHHHHHHhhCCCCHHHH---HHHHHHHHHHHHHHH---HhcCCC-CCeEEEeCcc--ccCHHHHH
Confidence 677777776 67888885 569999999998433 444443 4689999997 45666665
No 46
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=96.97 E-value=0.0021 Score=63.47 Aligned_cols=69 Identities=16% Similarity=0.292 Sum_probs=49.2
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCCe
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL 135 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~~~ 135 (536)
++||||+|.|++|++++|.+|+++...+.+++ .+++++.+.+.+.+++ .+|.+|||+ .++
T Consensus 5 ~~lgidiggt~i~~~l~d~~g~il~~~~~~~~---------~~~~~~~~~i~~~i~~---------~~i~gigi~-~pG- 64 (292)
T 2gup_A 5 TIATIDIGGTGIKFASLTPDGKILDKTSISTP---------ENLEDLLAWLDQRLSE---------QDYSGIAMS-VPG- 64 (292)
T ss_dssp CEEEEEEETTEEEEEEECTTCCEEEEEEECCC---------SSHHHHHHHHHHHHTT---------SCCSEEEEE-ESS-
T ss_pred EEEEEEECCCEEEEEEECCCCCEEEEEEEeCC---------CCHHHHHHHHHHHHHh---------CCCcEEEEE-ecC-
Confidence 48999999999999999999999987666543 2567766655554432 467788883 344
Q ss_pred EEEcCC-CCee
Q 009384 136 VAVDAD-GSPV 145 (536)
Q Consensus 136 v~vD~~-G~pl 145 (536)
++|.+ |...
T Consensus 65 -~vd~~~g~v~ 74 (292)
T 2gup_A 65 -AVNQETGVID 74 (292)
T ss_dssp -EECTTTCBEE
T ss_pred -cccCCCCEEE
Confidence 56754 6554
No 47
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=96.96 E-value=0.0018 Score=74.26 Aligned_cols=117 Identities=12% Similarity=0.131 Sum_probs=72.8
Q ss_pred CCCeEEEEEccccceeEEEEcCCCC----E-EEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC-EEE
Q 009384 53 SRSVFLGVDVGTGSARAGLFDESGK----L-LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEE-VKG 126 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~~g~----i-~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~-I~a 126 (536)
+...+||||+|+|++|++++|.+|+ + +...+.++|... .+.+.+++++.+.+++++++++.+..... ..|
T Consensus 76 E~G~~laiDlGGTnirv~lv~~~G~~~~~i~~~~~~~~ip~~~----~~~~~~~lf~~Ia~~i~~~l~~~~~~~~~~~lG 151 (917)
T 1cza_N 76 EKGDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPENI----VHGSGSQLFDHVAECLGDFMEKRKIKDKKLPVG 151 (917)
T ss_dssp CCEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEECCCHHH----HSSBHHHHHHHHHHHHHHHHHHHTCTTSCCCEE
T ss_pred CcceEEEEEeCCCeEEEEEEEecCCCcceEEEEEEEEECCccc----ccCCHHHHHHHHHHHHHHHHHhcCCCCCcccEE
Confidence 3457899999999999999998876 4 445555554210 12367899999999999998775443222 568
Q ss_pred EEEcCC-C------CeEE-EcCC-------CCeeeecCCC-------CCCcceeEEeccchHHHHHHHH
Q 009384 127 VGFAAT-C------SLVA-VDAD-------GSPVSVSWNG-------DSRRNIIVWMDHRAVKQAEKIN 173 (536)
Q Consensus 127 Igis~~-~------~~v~-vD~~-------G~pl~~~~~~-------~~~~p~i~W~D~Ra~~~~~~l~ 173 (536)
|+++.. . +.+. |.+. |+++...+.+ .+..|+..-+|..+....+.+.
T Consensus 152 i~fs~P~~q~~~~~G~l~~wtkgfni~~~~g~~v~~~L~~~l~r~g~~pv~~val~NDa~~tll~e~~~ 220 (917)
T 1cza_N 152 FTFSFPCQQSKIDEAILITWTKRFKASGVEGADVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYD 220 (917)
T ss_dssp EEECSCEECSSTTCCEECCCCTTCCCBTCTTSBHHHHHHHHHHHHCSCCCCEEEEECHHHHHHHHHHHH
T ss_pred EEEccccccCcCCceEEEecccCCCCCcccCCchHHHHHHHHhhcCCCCceEEEEEEhhHHHHHHhhcc
Confidence 888652 1 3333 3222 3333322221 1223566677777777666654
No 48
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=96.76 E-value=0.0082 Score=58.37 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=45.6
Q ss_pred CCCCeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 009384 52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118 (536)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~ 118 (536)
++.++++|||+||+++|++++|.+++++.....+.... ..| ...|.+..++.+..+++.+....+
T Consensus 25 ~~~~~~~gIDiGS~s~k~vi~~~~~~~l~~~~~~~~~l-~~g-~i~d~~~~~~~l~~~~~~~~~~~~ 89 (272)
T 3h1q_A 25 LPPPYKVGVDLGTADIVLVVTDQEGIPVAGALKWASVV-KDG-LVVDYIGAIQIVRELKAKVERLLG 89 (272)
T ss_dssp CCSCCEEEEECCSSEEEEEEECTTCCEEEEEEEECCCC-BTT-BCTTHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEEEcccceEEEEEECCCCcEEEEEeeccccc-CCC-EEEcHHHHHHHHHHHHHHHHHhcC
Confidence 44579999999999999999999999988776554321 333 345666666666666666555433
No 49
>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Probab=96.65 E-value=0.00089 Score=63.93 Aligned_cols=66 Identities=9% Similarity=0.057 Sum_probs=41.7
Q ss_pred CCeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 009384 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (536)
..+++|||+|.|++| ++|.+|++ ..+.+++ .+.+++++.+.+.+ ++++ .++.+|||+ .+
T Consensus 5 ~~~~lgiDIGGT~i~--~~d~~g~~--~~~~~t~-------~~~~~~~~~~~i~~----~i~~-----~~i~gigi~-~p 63 (226)
T 3lm2_A 5 DQTVLAIDIGGSHVK--IGLSTDGE--ERKVESG-------KTMTGPEMVAAVTA----MAKD-----MTYDVIAMG-YP 63 (226)
T ss_dssp GCCEEEEEECSSEEE--EEETTTCC--EEEEECC-------TTCCHHHHHHHHHH----HTTT-----CCCSEEEEE-ES
T ss_pred CCEEEEEEECCCEEE--EEECCCCE--EEEEECC-------CCCCHHHHHHHHHH----HHHh-----CCCCEEEEE-EE
Confidence 358999999999999 57888886 2334433 23467766655544 4333 157788883 34
Q ss_pred CeEEEcCCC
Q 009384 134 SLVAVDADG 142 (536)
Q Consensus 134 ~~v~vD~~G 142 (536)
+ ++|.++
T Consensus 64 G--~Vd~~~ 70 (226)
T 3lm2_A 64 G--PVVHNK 70 (226)
T ss_dssp S--CEETTE
T ss_pred e--EEECCe
Confidence 4 446554
No 50
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=96.59 E-value=0.007 Score=63.74 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=50.4
Q ss_pred CCCeEEEEEccccceeEEEEcCCC-CE---EEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 009384 53 SRSVFLGVDVGTGSARAGLFDESG-KL---LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVG 128 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~~g-~i---~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIg 128 (536)
+...+||||+|+|++|+++++.+| +- +...+.+.|... ...+.+++++.+.+++++.+++.+..... ..||
T Consensus 66 E~G~~lalDlGGTn~Rv~~V~l~G~~~~~~i~~~~~~ip~~~----~~~~~~~lfd~Ia~~i~~~l~~~~~~~~~-~~lG 140 (451)
T 1bdg_A 66 ETGNFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIPAEK----MSGSGTELFKYIAETLADFLENNGMKDKK-FDLG 140 (451)
T ss_dssp CCEEEEEEEESSSSEEEEEEEECC-CCCCEEEEEEECCCTTT----TTSBHHHHHHHHHHHHHHHHHHTTCCSSC-EEEE
T ss_pred ccceEEEEEeCCCeEEEEEEecCCCCcceEEEEEEEecCCcc----cCCCHHHHHHHHHHHHHHHHHhcCCCccc-cceE
Confidence 345789999999999999999888 51 112333333211 23367999999999999999876643333 5566
Q ss_pred Ec
Q 009384 129 FA 130 (536)
Q Consensus 129 is 130 (536)
|+
T Consensus 141 ~t 142 (451)
T 1bdg_A 141 FT 142 (451)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 51
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*
Probab=96.51 E-value=0.0026 Score=64.20 Aligned_cols=61 Identities=26% Similarity=0.155 Sum_probs=39.9
Q ss_pred CCCeEEEEEccccceeEEEEc-CCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 009384 53 SRSVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d-~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis 130 (536)
++.|+||||+|.|++|++++| .+|+++...+.++.. .+ .+.+.+++++++.+ .+|.+|||+
T Consensus 12 ~~~~~lgiDiGGT~i~~~l~dl~~g~i~~~~~~~~~~----------~~----~~~~~i~~~~~~~~---~~i~gigi~ 73 (332)
T 1sz2_A 12 STKYALVGDVGGTNARLALCDIASGEISQAKTYSGLD----------YP----SLEAVIRVYLEEHK---VEVKDGCIA 73 (332)
T ss_dssp --CEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGG----------CS----CHHHHHHHHHHHSC---CCCCEEEEE
T ss_pred CCCEEEEEEechhheEEEEEECCCCcEEEEEEecCCC----------cC----CHHHHHHHHHHhcC---CCccEEEEE
Confidence 457899999999999999999 589998765444321 11 12334555555543 357778773
No 52
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=96.23 E-value=0.0076 Score=58.81 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=46.0
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~ 131 (536)
++|+||+|.|++|.++||. ++++...+.+++ ..+.+++. ..+++++++.+.+..+|.+|+||+
T Consensus 3 MlL~IDIGNT~iK~gl~d~-~~l~~~~r~~T~--------~~t~de~~----~~l~~ll~~~~~~~~~I~~iiISS 65 (266)
T 3djc_A 3 LILCIDVGNSHIYGGVFDG-DEIKLRFRHTSK--------VSTSDELG----IFLKSVLRENNCSPETIRKIAICS 65 (266)
T ss_dssp CEEEEEECSSEEEEEEEET-TEEEEEEEEECS--------CCCHHHHH----HHHHHHHHTTTCCGGGCCEEEEEE
T ss_pred eEEEEEECCCeEEEEEEEC-CEEEEEEEecCC--------CCCHHHHH----HHHHHHHHHcCCChhhceEEEEec
Confidence 5899999999999999986 688877777664 22455554 346666666665566788998853
No 53
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=96.21 E-value=0.0027 Score=65.50 Aligned_cols=68 Identities=7% Similarity=0.063 Sum_probs=44.7
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHH---HHHHHHHHHHcCCCCCCEEEEEE
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAI---CAAVDSACSLANVDGEEVKGVGF 129 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i---~~~l~~~~~~~~~~~~~I~aIgi 129 (536)
+++||||+|+|++|++|+|.+ +++...+.+++.... .+++++.+.+ .+.+.+++++.+....+|.+| |
T Consensus 2 ~~vlgidiGgt~ik~al~d~~-~il~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~gI-i 72 (381)
T 1saz_A 2 FRILTINPGSTSTKLSIFEDE-RMVKMQNFSHSPDEL-----GRFQKILDQLEFREKIARQFVEETGYSLSSFSAF-V 72 (381)
T ss_dssp CEEEEEEECSSEEEEEEEETT-EEEEEEEEECCHHHH-----HTCSSGGGGHHHHHHHHHHHHHTTTCCGGGCSEE-E
T ss_pred CeEEEEECCccceeEEEEecc-hheeeeecccCcccc-----cchhhHHHHHHHHHHHHHHHHHHcCCCccCceEE-E
Confidence 478999999999999999976 888877776642100 0111223333 666777776655444578887 6
No 54
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=96.12 E-value=0.0097 Score=64.68 Aligned_cols=78 Identities=24% Similarity=0.299 Sum_probs=54.9
Q ss_pred CCeEEEEEccccceeEEEEc-CCCCEEEEEEeeccccc--------------CCCccccCHHHHHHHHHHHHHHHHHHcC
Q 009384 54 RSVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWK--------------EGDCIEQSSTDIWHAICAAVDSACSLAN 118 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d-~~g~i~~~~~~~~~~~~--------------~~g~~eqd~~~~~~~i~~~l~~~~~~~~ 118 (536)
..|-++||||||++.+.|+| .+|+++++.+.-.|... .++..+.=-..+.+.+.+++.++.++++
T Consensus 205 ~~~GlAvDiGTTtv~~~LvdL~tG~~l~~~~~~NpQ~~~G~DVisRI~~a~~~~~g~~~L~~~v~~~in~li~~l~~~~~ 284 (631)
T 3zyy_X 205 RVFGLAIDIGTTTVVVQLVDLVSGKVLGTKGNYNKQAAFGDDVISRIIYVDENPDGAEKLRKAVLSTINELIFQLCKEHG 284 (631)
T ss_dssp CCEEEEEEECSSEEEEEEEETTTCCEEEEEEEECGGGGTCSSHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEEecccceeEEEEECCCCCEEEeecccCCCCCcchHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35889999999999999999 79999999887665321 1211111122344555556666666678
Q ss_pred CCCCCEEEEEEcC
Q 009384 119 VDGEEVKGVGFAA 131 (536)
Q Consensus 119 ~~~~~I~aIgis~ 131 (536)
+++++|..+.|++
T Consensus 285 i~~~~I~~~~v~G 297 (631)
T 3zyy_X 285 VEKKEIMAAVVAG 297 (631)
T ss_dssp CCGGGEEEEEEEE
T ss_pred CCHHHeeEEEEEc
Confidence 8899999999864
No 55
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Probab=95.72 E-value=0.027 Score=59.47 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=47.7
Q ss_pred CCCeEEEEEccccceeEEEEcCCCCE-E--EEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCC-CCEEEEE
Q 009384 53 SRSVFLGVDVGTGSARAGLFDESGKL-L--GSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDG-EEVKGVG 128 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~~g~i-~--~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~-~~I~aIg 128 (536)
+...+|+||+|+|++|+++++.+|+- . ...+.++|... ..-+.+++++.+.+++.+.+++..... .+...+|
T Consensus 78 E~G~~LalDlGGTn~Rv~~V~l~g~~~~~~~~~~~~Ip~~~----~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~l~lG 153 (485)
T 3o8m_A 78 ETGDFLALDLGGTNLRVVLVKLGGNHDFDTTQNKYRLPDHL----RTGTSEQLWSFIAKCLKEFVDEWYPDGVSEPLPLG 153 (485)
T ss_dssp CEEEEEEEEESSSEEEEEEEEEESSSCEEEEEEEEECCTTG----GGSBHHHHHHHHHHHHHHHHHHHCTTCCSSCEEEE
T ss_pred cceEEEEEEecCCeEEEEEEEECCCCceEEEEEEEecCchh----ccCCHHHHHHHHHHHHHHHHHHhcccccccccceE
Confidence 44579999999999999999977651 1 12222333111 122378999999999999998764321 3344455
Q ss_pred E
Q 009384 129 F 129 (536)
Q Consensus 129 i 129 (536)
|
T Consensus 154 f 154 (485)
T 3o8m_A 154 F 154 (485)
T ss_dssp E
T ss_pred E
Confidence 5
No 56
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=95.63 E-value=0.016 Score=55.89 Aligned_cols=61 Identities=21% Similarity=0.369 Sum_probs=42.1
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis 130 (536)
+..|+||+|.|++|.+++| +++++...+.+++ ..+..+++...+.+.++. ...+|.+|.||
T Consensus 3 ~M~L~IDIGNT~ik~gl~~-~~~l~~~~r~~T~-------~~~t~de~~~~l~~l~~~-------~~~~i~~i~Is 63 (249)
T 3bex_A 3 PMYLLVDVGNTHSVFSITE-DGKTFRRWRLSTG-------VFQTEDELFSHLHPLLGD-------AMREIKGIGVA 63 (249)
T ss_dssp CEEEEEEECSSEEEEEEES-SSSSCEEEEEECC-------TTCCHHHHHHHHHHHHGG-------GGGGEEEEEEE
T ss_pred ceEEEEEECCCeEEEEEEE-CCEEEEEEEecCC-------CCCCHHHHHHHHHHHHhh-------ccccCCEEEEE
Confidence 4579999999999999998 5677776666654 233567776554444432 13468888884
No 57
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=95.13 E-value=0.045 Score=62.73 Aligned_cols=77 Identities=19% Similarity=0.361 Sum_probs=51.8
Q ss_pred CCCCCCCeEEEEEccccceeEEEEcCC-CC--EEEEEEee--cccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 009384 49 PPARSRSVFLGVDVGTGSARAGLFDES-GK--LLGSASSP--IQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEE 123 (536)
Q Consensus 49 ~~~m~~~~~lgIDiGTtsiKa~l~d~~-g~--i~~~~~~~--~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~ 123 (536)
|..-+...+||||+|+|++|+++++.+ |+ ++...+.. .|... ..-+.+++|+.+.+++++.+++.+.....
T Consensus 520 P~G~E~G~~lalDlGGTn~Rv~~V~l~~g~~~~~~~~~~~~~ip~~~----~~~~~~~lfd~Ia~~i~~~l~~~~~~~~~ 595 (917)
T 1cza_N 520 PDGTENGDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIEI----MQGTGEELFDHIVSCISDFLDYMGIKGPR 595 (917)
T ss_dssp CCSCCCEEEEEEEESSSSEEEEEEEEECSTTCEEEEEEEEECCCHHH----HTSBHHHHHHHHHHHHHHHHHHHTCCSSC
T ss_pred CCCCcceEEEEEEECCCcEEEEEEEeCCCcceeEEeeeeEEecCccc----ccCCHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 333345678999999999999999975 64 65443333 33211 12256899999999999999876554344
Q ss_pred EEEEEEc
Q 009384 124 VKGVGFA 130 (536)
Q Consensus 124 I~aIgis 130 (536)
+ .|||+
T Consensus 596 l-~lG~t 601 (917)
T 1cza_N 596 M-PLGFT 601 (917)
T ss_dssp C-EEEEE
T ss_pred e-eEEEE
Confidence 4 56663
No 58
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=94.96 E-value=0.049 Score=53.15 Aligned_cols=62 Identities=21% Similarity=0.271 Sum_probs=43.2
Q ss_pred EEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 009384 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis 130 (536)
+|.||+|.|++|.++|| +++++...+.+++ ..+..+++... ++++++..+.+..+|.+|.||
T Consensus 2 lL~IDIGNT~ik~gl~~-~~~l~~~~r~~T~-------~~~t~de~~~~----l~~ll~~~~~~~~~i~~iiIS 63 (268)
T 2h3g_X 2 IFVLDVGNTNAVLGVFE-EGELRQHWRMETD-------RHKTEDEYGML----VKQLLEHEGLSFEDVKGIIVS 63 (268)
T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEEEEEECC-------TTCCHHHHHHH----HHHHHHHTTCCGGGCCEEEEE
T ss_pred EEEEEECcCcEEEEEEE-CCEEEEEEEecCC-------CcCCHHHHHHH----HHHHHHHcCCCcccCcEEEEE
Confidence 68999999999999998 4677776666654 22345666544 555666555555678888774
No 59
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=94.64 E-value=0.13 Score=53.46 Aligned_cols=77 Identities=6% Similarity=0.051 Sum_probs=53.4
Q ss_pred CCeEEEEEccccceeEEEEcC--CC-CEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 009384 54 RSVFLGVDVGTGSARAGLFDE--SG-KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~--~g-~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis 130 (536)
.++++||||||+++|+++... +| ++++....+..- -..| .-.|.+..-+++.++++++=++++....+=..++++
T Consensus 7 ~~~ivglDIGts~I~~vv~~~~~~~~~i~g~~~~~s~g-v~~G-~I~di~~~~~~I~~av~~ae~~~g~~i~~~v~v~i~ 84 (419)
T 4a2a_A 7 TVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRG-LDEG-EIKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFS 84 (419)
T ss_dssp CCEEEEEEECSSEEEEEEEEC----CEEEEEEEEECCS-EETT-EESBHHHHHHHHHHHHHHHHHHHTSCCCSEEEEEEC
T ss_pred CCEEEEEEccCCEEEEEEEEEcCCCCEEEEEEEeccCC-eeCC-EEEcHHHHHHHHHHHHHHHHHHcCCCcCceEEEEEc
Confidence 468999999999999999973 23 677766655321 1333 345899998888888888766667654441457776
Q ss_pred CC
Q 009384 131 AT 132 (536)
Q Consensus 131 ~~ 132 (536)
+.
T Consensus 85 g~ 86 (419)
T 4a2a_A 85 SV 86 (419)
T ss_dssp CT
T ss_pred CC
Confidence 65
No 60
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=93.97 E-value=0.16 Score=51.03 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=52.4
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccc-cCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIE-QSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~e-qd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
++||||.++..++++|++. |++++....++. ....|+.. .....-.+.+..++++++++++++..+|.+|+++..
T Consensus 2 ~iLgIdts~~~~~val~~~-g~i~~~~~~~~~-~~~gg~~p~~~~~~h~~~l~~~i~~~L~~agi~~~did~Ia~~~G 77 (330)
T 2ivn_A 2 LALGIEGTAHTLGIGIVSE-DKVLANVFDTLT-TEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFSQG 77 (330)
T ss_dssp CEEEEECSSSEEEEEEECS-SCEEEEEEEECC-CTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEEEEE
T ss_pred EEEEEEccCCCeEEEEEEC-CEEEEEEEEEee-cccCCcCchhhHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECC
Confidence 5899999999999999974 588866554432 12234331 112234456667888999998988899999998543
No 61
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=93.66 E-value=0.18 Score=51.20 Aligned_cols=71 Identities=13% Similarity=0.040 Sum_probs=43.9
Q ss_pred CeEEEEEccccceeEEEEcCCCC--EEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGK--LLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~--i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~ 131 (536)
+.++|||||||++|++++. +|+ +......++|... ..|. -.|++.+..++.+++ ++.+....+ ..+++++
T Consensus 13 ~~~vgiDiGt~~i~~~~~~-~~~~~i~~~g~~~~ps~~~~~g~-i~d~~~~~~~ik~~~----~~~~~~~~~-v~~~i~~ 85 (377)
T 2ych_A 13 VEALGLEIGASALKLVEVS-GNPPALKALASRPTPPGLLMEGM-VAEPAALAQEIKELL----LEARTRKRY-VVTALSN 85 (377)
T ss_dssp CCCEEEEECSSEEEEEEEE-TTTTEEEEEEEEECCTTSEETTE-ESCHHHHHHHHHHHH----HHHTCCCCE-EEEEECG
T ss_pred CceEEEEeCCCeEEEEEEe-CCceEEEEEEeEECCCCcccCCC-cCCHHHHHHHHHHHH----HHcCCCcce-EEEEecC
Confidence 4689999999999999996 555 5455555555333 3443 357877666555544 444543333 3466654
Q ss_pred C
Q 009384 132 T 132 (536)
Q Consensus 132 ~ 132 (536)
.
T Consensus 86 ~ 86 (377)
T 2ych_A 86 L 86 (377)
T ss_dssp G
T ss_pred C
Confidence 3
No 62
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=92.34 E-value=0.28 Score=49.36 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=55.5
Q ss_pred CCCCeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccc-cCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 009384 52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIE-QSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (536)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~e-qd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis 130 (536)
|+..++||||-.+..+-++|++ ++++++.....+.. ...|... .....-.+.+..+++++++++++...+|.+|+++
T Consensus 3 ~~~M~iLgIdts~~~~svAl~~-~~~i~~~~~~~~~~-~~gGv~p~~a~~~H~~~l~~~i~~~L~~ag~~~~did~Iav~ 80 (334)
T 3eno_A 3 MDPMIVLGLEGTAHTISCGIID-ESRILAMESSMYRP-KTGGIRPLDAAVHHSEVIDTVISRALEKAKISIHDIDLIGFS 80 (334)
T ss_dssp CCCCEEEEEECSSSEEEEEEEE-SSCCCEEEEEECCC-SSCSCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCEEEEE
T ss_pred ccCceEEEEECCCcCeEEEEEE-CCEEEEEEEEeecc-ccCCcCcchHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 4445799999988889999998 55777764443321 2233321 1123344567788899999999989999999997
Q ss_pred CCCC
Q 009384 131 ATCS 134 (536)
Q Consensus 131 ~~~~ 134 (536)
..++
T Consensus 81 ~gPG 84 (334)
T 3eno_A 81 MGPG 84 (334)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 5544
No 63
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}
Probab=92.21 E-value=0.5 Score=49.18 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=51.9
Q ss_pred ccCCC-CCCCCCCeEEEEEccccceeEEEEcCCCCEEEEEE--eecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCC
Q 009384 44 AYATA-PPARSRSVFLGVDVGTGSARAGLFDESGKLLGSAS--SPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVD 120 (536)
Q Consensus 44 ~~~~~-~~~m~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~--~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~ 120 (536)
+|... |..-+...+|+||+|+|+.|+++++..|.+ ...+ .+.|.....| ..+++|+.+.+++.+.+++.+..
T Consensus 47 tyv~~~P~G~E~G~~LAlDlGGTn~RV~~V~l~g~~-~~~~~~~~ip~~~~~g----~~~~LFd~Ia~~i~~fl~~~~~~ 121 (445)
T 3hm8_A 47 TFVRATPDGSERGDFLALDLGGTNFRVLLVRVTTGV-QITSEIYSIPETVAQG----SGQQLFDHIVDCIVDFQQKQGLS 121 (445)
T ss_dssp CCCCSSCCSCCCEEEEEEEESSSSEEEEEEEESSSE-EEEEEEECCCHHHHTS----BHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCCCCCceeeEEEEEEecCCeEEEEEEEECCce-EEEEEEeccCccccCC----CHHHHHHHHHHHHHHHHHHhCcc
Confidence 44433 333344578999999999999999976663 2222 2333211122 46889999999999998875532
Q ss_pred -CCCEEEEEEc
Q 009384 121 -GEEVKGVGFA 130 (536)
Q Consensus 121 -~~~I~aIgis 130 (536)
..-..|+.+|
T Consensus 122 ~~~lplGftFS 132 (445)
T 3hm8_A 122 GQSLPLGFTFS 132 (445)
T ss_dssp TCCCCEEEEEC
T ss_pred cccCcceEEEe
Confidence 1223555554
No 64
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*
Probab=90.86 E-value=0.34 Score=50.78 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=43.4
Q ss_pred CCCeEEEEEccccceeEEEEcCCCC-----EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 009384 53 SRSVFLGVDVGTGSARAGLFDESGK-----LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV 119 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~~g~-----i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~ 119 (536)
+...+|+||+|+|+.|+++++..|. .+...+..+++ + ..-..-..+++|+-|.++|.+.+++.+.
T Consensus 75 E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~~~I-p-~~l~~gt~~eLFd~IA~~i~~fl~~~~~ 144 (470)
T 3f9m_A 75 EVGDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSI-P-EDAMTGTAEMLFDYISECISDFLDKHQM 144 (470)
T ss_dssp CCEEEEEEEESSSEEEEEEEEEEC----CEEEEEEEEEEEC-C-HHHHSSBHHHHHHHHHHHHHHHHHHTTC
T ss_pred cceEEEEEEecCceEEEEEEEECCCCCCcceEEEEEEeecC-C-hHhccCCHHHHHHHHHHHHHHHHhhccc
Confidence 3346899999999999999996443 23333333321 1 0001224789999999999999987653
No 65
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=87.46 E-value=0.84 Score=40.17 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.5
Q ss_pred eEEEEEccccceeEEEEcCCCCEE
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLL 79 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~ 79 (536)
.+||||.|+..++.++.|..|.+.
T Consensus 4 riLGiDpG~~riGvAv~d~~g~~a 27 (150)
T 1vhx_A 4 RILGLDLGTKTLGVALSDEMGWTA 27 (150)
T ss_dssp EEEEEEECSSEEEEEEECTTSSSE
T ss_pred EEEEEEccCCEEEEEEEECCCCEE
Confidence 489999999999999999988764
No 66
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=86.93 E-value=1.8 Score=46.31 Aligned_cols=80 Identities=13% Similarity=0.175 Sum_probs=54.8
Q ss_pred CCCCeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 009384 52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (536)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~-eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis 130 (536)
|+..++||||-.+..+-++|++.++++++........ ...|-+ |.....-.+.+...+++++++ +...+|.+|+++
T Consensus 3 m~~m~iL~i~ts~~~~~~al~~~~~~~~~~~~~~~~~-~~gg~~p~~a~~~h~~~l~~~i~~~l~~--~~~~~id~ia~~ 79 (540)
T 3en9_A 3 MDPMICLGLEGTAEKTGVGIVTSDGEVLFNKTIMYKP-PKQGINPREAADHHAETFPKLIKEAFEV--VDKNEIDLIAFS 79 (540)
T ss_dssp CCSCEEEEEECSSSEEEEEEEETTSCEEEEEEEECCC-CCSSSSCCCHHHHHHHHHHHHHHHHHHH--SCGGGCCEEEEE
T ss_pred cccceEEEEEcCccceEEEEEECCCeEEEEEEEeecC-CCCCCChHHHHHHHHHHHHHHHHHHHHh--CCHhHCcEEEEe
Confidence 4335799999999999999999877888776554321 122322 222344566677778888877 567889999997
Q ss_pred CCCC
Q 009384 131 ATCS 134 (536)
Q Consensus 131 ~~~~ 134 (536)
..++
T Consensus 80 ~gPG 83 (540)
T 3en9_A 80 QGPG 83 (540)
T ss_dssp EESS
T ss_pred cCCC
Confidence 5433
No 67
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=86.75 E-value=0.75 Score=45.83 Aligned_cols=33 Identities=21% Similarity=0.561 Sum_probs=22.4
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccc
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW 89 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~ 89 (536)
++||+|||+-++|+++++.+|++ ...+.+.|++
T Consensus 1 ~iiG~DIGGAn~K~a~~~~~g~~-~~~~~~~PlW 33 (334)
T 3cet_A 1 MILGIDIGGANTKITELHENGEF-KVHHLYFPMW 33 (334)
T ss_dssp CEEEEEEC--CEEEEEECSTTCC-EEEEC-----
T ss_pred CeeEEEecccceeeeeecCCCce-EEEEEecCCc
Confidence 37999999999999999988998 6666666744
No 68
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*
Probab=86.49 E-value=1.4 Score=42.81 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=24.9
Q ss_pred CCCCCeEEEEEccccceeEEEEcCCCCEEEEEEee
Q 009384 51 ARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSP 85 (536)
Q Consensus 51 ~m~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~ 85 (536)
.|. ...|.||+|-|++|..++|.+++++...+..
T Consensus 20 ~~~-~M~L~IDiGNT~ik~g~~~~~~~~~~~~r~~ 53 (271)
T 2f9w_A 20 HMA-SMILELDCGNSLIKWRVIEGAARSVAGGLAE 53 (271)
T ss_dssp ----CEEEEEEECSSCEEEEEEETTTEEEEEEEES
T ss_pred ccc-CcEEEEEeCCCeeEEEEEeCCCEEEEEEEec
Confidence 355 4689999999999999998556776655544
No 69
>3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.55A {Sinorhizobium meliloti}
Probab=85.25 E-value=0.8 Score=45.64 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=28.0
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeec
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPI 86 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~ 86 (536)
.++|+||-||||.|+-++|.+|+++.+.+.+.
T Consensus 7 ~~~IavDWGTSnlRa~l~~~~g~vl~~~~~~~ 38 (330)
T 3t69_A 7 GYYAAVDWGTSSFRLWIIGEDGAVLAERRSAE 38 (330)
T ss_dssp -CEEEEEECSSCEEEEEECTTSCEEEEEEESC
T ss_pred CCEEEEEecchheehheecCCCCchhhhcCCc
Confidence 57999999999999999999999998776654
No 70
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=84.48 E-value=2 Score=42.65 Aligned_cols=71 Identities=18% Similarity=0.145 Sum_probs=38.4
Q ss_pred eEEEEEccccceeEEEEcC-CCC--EEEEEEeeccccc---CCCccccCHHHHHHHHHHHHHHH---HHHcCCCCCCEEE
Q 009384 56 VFLGVDVGTGSARAGLFDE-SGK--LLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSA---CSLANVDGEEVKG 126 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~-~g~--i~~~~~~~~~~~~---~~g~~eqd~~~~~~~i~~~l~~~---~~~~~~~~~~I~a 126 (536)
.+.+||+||.++|..+++. ++. ++...+..+..-. ..|. .+++ -.+.+++++++. ++..++ .+|.+
T Consensus 13 ~~a~IDiGSns~rl~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g~--ls~e-ai~r~~~~L~~f~~~~~~~~v--~~i~~ 87 (315)
T 1t6c_A 13 RVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGR--LQED-RIEETIQVLKEYKKLIDEFKV--ERVKA 87 (315)
T ss_dssp EEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHSS--CCHH-HHHHHHHHHHHHHHHHHHTTC--SEEEE
T ss_pred EEEEEEECcCcEEEEEEEEcCCcEEEEeeeeEEeecCCCccccCC--cCHH-HHHHHHHHHHHHHHHHHHCCC--CeEEE
Confidence 4789999999999999994 443 3333333332211 1122 2333 334444555444 444332 45766
Q ss_pred EEEcC
Q 009384 127 VGFAA 131 (536)
Q Consensus 127 Igis~ 131 (536)
++-++
T Consensus 88 vATsA 92 (315)
T 1t6c_A 88 VATEA 92 (315)
T ss_dssp EECHH
T ss_pred EEcHH
Confidence 66544
No 71
>3nuw_A 2-OXO-3-deoxygalactonate kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.09A {Klebsiella pneumoniae} PDB: 3r1x_A*
Probab=83.46 E-value=0.94 Score=44.45 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=29.3
Q ss_pred CCCCeEEEEEccccceeEEEEcCCCCEEEEEEeeccc
Q 009384 52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQI 88 (536)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~ 88 (536)
|+ .++|+||-||||.|+-++| +|+++.+.+.+..+
T Consensus 4 m~-~~~IavDWGTs~lRa~l~~-~g~vl~~~~~~~Gv 38 (295)
T 3nuw_A 4 MT-ARYIAIDWGSTNLRAWLYQ-GEECLESRQSEAGV 38 (295)
T ss_dssp GG-CEEEEEEECSSCEEEEEEE-TTEEEEEEEESCCT
T ss_pred CC-ccEEEEEecchheeeeeec-CCceehhhcCCCch
Confidence 44 5799999999999999999 89999887766543
No 72
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=82.90 E-value=1.1 Score=43.83 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=21.6
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEE
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGS 81 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~ 81 (536)
.+.+|||+|+|.+|++++ ++++++..
T Consensus 20 ~~~iGIDiGsTt~K~V~~-~~~~i~~~ 45 (287)
T 2ews_A 20 HMKVGIDAGGTLIKIVQE-QDNQRTFK 45 (287)
T ss_dssp -CEEEEEECSSEEEEEEE-CSSCEEEE
T ss_pred CeEEEEEEChhhEEEEEE-cCCEEEEE
Confidence 478999999999999999 46777755
No 73
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=82.72 E-value=3.5 Score=40.78 Aligned_cols=74 Identities=16% Similarity=0.090 Sum_probs=40.2
Q ss_pred CCCCeEEEEEccccceeEEEEcC-CCC--EEEEEEeeccccc---CCCccccCHHHHHHHHHHHHHHH---HHHcCCCCC
Q 009384 52 RSRSVFLGVDVGTGSARAGLFDE-SGK--LLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSA---CSLANVDGE 122 (536)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~-~g~--i~~~~~~~~~~~~---~~g~~eqd~~~~~~~i~~~l~~~---~~~~~~~~~ 122 (536)
|+ +.+.+||+||.|+|..+++. ++. ++...+..+.... ..|. .+++. .+.+++++++. ++..++ .
T Consensus 2 m~-~~~A~IDiGSNsirL~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g~--ls~ea-i~r~~~~L~~f~~~~~~~~v--~ 75 (315)
T 3mdq_A 2 MS-QRIGVIDMGTNTFHLLITDIVNDRPHTLVNEKSAVGLGKGGITKGF--ITEEA-MDRALDTLKKFRVILDEHAV--V 75 (315)
T ss_dssp ---CEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCSSTTTGGGTC--CCHHH-HHHHHHHHHHHHHHHHHTTC--C
T ss_pred CC-ceEEEEEecCCcEEEEEEEEcCCceEEeeeceeeeeccccccccCC--cCHHH-HHHHHHHHHHHHHHHHHcCC--C
Confidence 44 45889999999999999984 343 3344344433222 2232 23433 34445555544 444443 4
Q ss_pred CEEEEEEcC
Q 009384 123 EVKGVGFAA 131 (536)
Q Consensus 123 ~I~aIgis~ 131 (536)
+|.+++-++
T Consensus 76 ~v~~vATsA 84 (315)
T 3mdq_A 76 HVIATGTSA 84 (315)
T ss_dssp EEEEEECHH
T ss_pred EEEEEeeHH
Confidence 666666543
No 74
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=80.54 E-value=2.8 Score=44.58 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=41.2
Q ss_pred CeEEEEEccccceeEEEEc-CCC--CEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEE
Q 009384 55 SVFLGVDVGTGSARAGLFD-ESG--KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVK 125 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d-~~g--~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~ 125 (536)
+|++|||||+|++.+++-+ .+| +++.+...++.=. -| ..++.+. +.++|++++++++....++.
T Consensus 2 ~~i~GiDIGnsttev~l~~~~~g~i~~l~~g~~~ttGi--KG-t~~Ni~g----~~~si~~a~~~a~~~~~d~~ 68 (607)
T 1nbw_A 2 PLIAGIDIGNATTEVALASDYPQARAFVASGIVATTGM--KG-TRDNIAG----TLAALEQALAKTPWSMSDVS 68 (607)
T ss_dssp CEEEEEEECSSEEEEEEEECBTTBCCCCEEEEEECCSS--TT-SGGGHHH----HHHHHHHHHTTSSCCGGGEE
T ss_pred cEEEEEEecCceEEEEEEEEcCCeEEEEEeecccCCcc--ce-eeeCHHH----HHHHHHHHHHHhCCcccCce
Confidence 6899999999999999876 335 5566666665322 12 2334444 45667777777665444444
No 75
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=80.52 E-value=0.77 Score=47.08 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=32.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecccccccccccc
Q 009384 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTVR 533 (536)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~~ 533 (536)
-++.++..+++.+++.+.-.++..++........++.|+++||+ |+.+-++
T Consensus 311 itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~--s~~p~v~ 361 (409)
T 4gni_A 311 INRLRYETIARTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGT--SNTPRIA 361 (409)
T ss_dssp EEHHHHHHHTHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEESGG--GGCHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCc--cccHHHH
Confidence 35667766677777777666666655432222357899999997 5555544
No 76
>3sk3_A Acetate kinase, acetokinase; actin-like ATPase domain, askha superfamily of phosphotransf acetokinase, ATP binding, phosphotransferase; HET: CIT; 1.90A {Salmonella enterica subsp} PDB: 3slc_A
Probab=80.49 E-value=1.9 Score=44.36 Aligned_cols=37 Identities=5% Similarity=-0.017 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEecccccc
Q 009384 491 LATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVFYLS 527 (536)
Q Consensus 491 rAvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGgs~s 527 (536)
+-++|-.+|.++..+-.+.. .+.+++-|+++||..-+
T Consensus 315 ~lA~d~f~yri~k~IGa~aa~L~G~vDaIVFTgGIGEn 352 (415)
T 3sk3_A 315 KRAMDVYCHRLAKYIGSYTALMDGRLDAVVFTGGIGEN 352 (415)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGSTTCCCEEEEEHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccC
Confidence 36789999999999888765 67789999999998433
No 77
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=76.47 E-value=3.9 Score=38.09 Aligned_cols=64 Identities=13% Similarity=0.249 Sum_probs=45.7
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (536)
.+|+||--|..+-++|++. |+++...... + .+..+. +...++++++++++...+|.+|+++..+
T Consensus 3 ~iLaIdTS~~~~svAl~~~-~~~~~~~~~~-~--------~~Hs~~----L~p~i~~~L~~a~~~~~dld~Iav~~GP 66 (213)
T 3r6m_A 3 KILAIDTATENCSVALLVN-DQVISRSEVA-P--------RDHTKK----VLPMVDEVLKEAGLTLQDLDALAFGRGP 66 (213)
T ss_dssp CEEEEECSSSEEEEEEESS-SCEEEEEEEC-C--------SCCHHH----HHHHHHHHHHTTTCCTTTCSEEEEEEES
T ss_pred EEEEEEccCcceEEEEEEC-CEEEEEEEec-h--------HHHHHH----HHHHHHHHHHHcCCCHHHccEEEEecCC
Confidence 4899999998999999974 7877653211 1 112333 3457788888888888999999996543
No 78
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=75.11 E-value=4.2 Score=37.96 Aligned_cols=65 Identities=12% Similarity=0.050 Sum_probs=45.0
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (536)
.++|+||--|..+-++|++ +++++ +...... .+-.+. +...++++++++++...+|.+|+++..+
T Consensus 12 ~~iLaidTS~~~~sval~~-~~~~l-~~~~~~~--------r~Hse~----L~p~i~~~L~~a~~~~~dld~Iav~~GP 76 (218)
T 2a6a_A 12 HMNVLALDTSQRIRIGLRK-GEDLF-EISYTGE--------KKHAEI----LPVVVKKLLDELDLKVKDLDVVGVGIGP 76 (218)
T ss_dssp -CEEEEEECSSSEEEEEEE-TTEEE-EEEEESC--------GGGGGH----HHHHHHHHHHHHTCCGGGCSEEEEECCS
T ss_pred ceEEEEEcCCcCeEEEEEE-CCEEE-EEEecch--------HHHHHH----HHHHHHHHHHHcCCCHHHCCEEEEEcCC
Confidence 4689999999999999997 56676 3222211 111233 3456777788888888999999997654
No 79
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=74.68 E-value=12 Score=33.17 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=39.8
Q ss_pred eEEEEEccccceeEEEEcCCCC------EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 009384 56 VFLGVDVGTGSARAGLFDESGK------LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~------i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgi 129 (536)
.+||||-|++.+-.+++|.+|+ .+......++ ...+..+=+..+.+.+.+++++. ++..++|
T Consensus 2 rILGIDPGl~~tG~gvi~~~g~~~~~~~~v~~G~I~t~-------~~~~~~~RL~~I~~~l~~~i~~~-----~Pd~vai 69 (166)
T 4ep4_A 2 VVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTS-------PQEPAKERVGRIHARVLEVLHRF-----RPEAVAV 69 (166)
T ss_dssp EEEEEECCSSEEEEEEEEECSSSSSCEEEEEEEEEECC-------TTSCHHHHHHHHHHHHHHHHHHH-----CCSEEEE
T ss_pred EEEEEccccCceEEEEEEecCCccceEEEEEeCeEECC-------CCCCHHHHHHHHHHHHHHHHHHh-----CCCEEEE
Confidence 4899999999999999997665 2333334432 12244444556667777777763 3445666
No 80
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=72.95 E-value=8.7 Score=40.71 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=43.9
Q ss_pred CCCeEEEEEccccceeEEEEcC-CCC--EEEEEEeeccccc---CCCccccCHHHHHHHHHHHHHHHHHHcC-CCCCCEE
Q 009384 53 SRSVFLGVDVGTGSARAGLFDE-SGK--LLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSACSLAN-VDGEEVK 125 (536)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~-~g~--i~~~~~~~~~~~~---~~g~~eqd~~~~~~~i~~~l~~~~~~~~-~~~~~I~ 125 (536)
+.+.+.+||+||.|+|..|++. ++. ++...+..+.... ..|. .+++ -.+..++++++..+... ....+|.
T Consensus 9 ~~~~~AaIDiGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~--Ls~e-ai~r~~~~L~~f~~~~~~~~v~~v~ 85 (513)
T 1u6z_A 9 RPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNM--LSEE-AMTRGLNCLSLFAERLQGFSPASVC 85 (513)
T ss_dssp ---CEEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTCC--BCHH-HHHHHHHHHHHHHHHTTTCCGGGEE
T ss_pred cCCeEEEEEeccccEEEEEEEEcCCeeEEEEeeEEEEeccCcccccCC--cCHH-HHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 3346899999999999999984 443 3334344433222 2232 2333 44555667766655432 2335788
Q ss_pred EEEEcC
Q 009384 126 GVGFAA 131 (536)
Q Consensus 126 aIgis~ 131 (536)
+++-++
T Consensus 86 ~vATsA 91 (513)
T 1u6z_A 86 IVGTHT 91 (513)
T ss_dssp EEECHH
T ss_pred EEecHH
Confidence 888865
No 81
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A
Probab=72.85 E-value=9.6 Score=35.78 Aligned_cols=64 Identities=14% Similarity=0.241 Sum_probs=44.3
Q ss_pred eEEEEEccccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 009384 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (536)
++|+||--+..+-++|++ +|+++... .... ....+. +..+++++++++++...+|.+|+++..+
T Consensus 2 ~iL~idTs~~~~sval~~-~~~~~~~~-~~~~--------~~h~~~----l~~~i~~~L~~a~~~~~did~Iav~~GP 65 (231)
T 2gel_A 2 RILAIDTATEACSVALWN-NGTINAHF-ELCP--------REHTQR----ILPMVQEILAASGASLNEIDALAFGRGP 65 (231)
T ss_dssp EEEEEECSSSEEEEEEEE-TTEEEEEE-EECC--------SCCHHH----HHHHHHHHHHHTTCCGGGCSEEEEECCS
T ss_pred eEEEEECCCcCeEEEEEE-CCEEEEEE-hhhh--------HHHHHH----HHHHHHHHHHHcCCCHHHCCEEEEEcCC
Confidence 589999988888899997 56665421 1111 112333 4567788888888888999999997553
No 82
>4ijn_A Acetate kinase, acetokinase; proprionate kinase, ATP-dependent, metabolic intermediate biosynthesis, acetyl-COA biosynthesis, hydrolysis; HET: AMP; 1.70A {Mycobacterium smegmatis}
Probab=72.69 E-value=16 Score=37.17 Aligned_cols=34 Identities=12% Similarity=-0.042 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEecccc
Q 009384 491 LATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVFY 525 (536)
Q Consensus 491 rAvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGgs 525 (536)
+-++|..+|.++..+-.+.. .| .++.|+++||.+
T Consensus 300 ~la~d~f~yriak~Iga~aa~LG-~vDaIVfTGGIg 334 (398)
T 4ijn_A 300 KLAYDVYIHRLRKYIGAYMAVLG-RTDVISFTAGVG 334 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-SCCEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEECCccc
Confidence 46788889998888776654 44 688999999985
No 83
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=72.17 E-value=6.7 Score=43.71 Aligned_cols=63 Identities=24% Similarity=0.432 Sum_probs=41.5
Q ss_pred CCeEEEEEcc-ccceeEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 009384 54 RSVFLGVDVG-TGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (536)
Q Consensus 54 ~~~~lgIDiG-TtsiKa~l~d~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgi 129 (536)
.+.+||||=| .|++|++++|++|+++..... ||..+. .+ |+...+.+.+++++.. -++.+||-
T Consensus 328 ~~~vlg~dpg~r~g~k~a~vd~~G~~l~~~~i-y~~~~~-----~~----~~~~~~~l~~li~~~~---~~~IaIGn 391 (785)
T 3bzc_A 328 PRATLGLDPGLRTGVKVAVVDATGKLLDTATV-YPHAPK-----NQ----WDQTLAVLAALCAKHQ---VELIAIGN 391 (785)
T ss_dssp SCCEEEEECCSSSCEEEEEECTTSCEEEEEEE-CCSGGG-----CC----HHHHHHHHHHHHHHHT---CCEEEEES
T ss_pred CCeEEEECCCCcCceEEEEECCCCCEEEEEEE-ecCCch-----hH----HHHHHHHHHHHHHHcC---CCEEEECC
Confidence 3579999999 699999999999999987654 332111 11 3344556777777643 23444543
No 84
>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} SCOP: d.79.1.2
Probab=70.00 E-value=5.3 Score=34.44 Aligned_cols=37 Identities=8% Similarity=0.173 Sum_probs=33.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 009384 97 QSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (536)
Q Consensus 97 qd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (536)
-++++|++++.+++.++++++++++++|.+|-||.+.
T Consensus 44 Nt~e~I~~At~ELl~eii~~N~l~~eDIvSv~FTvT~ 80 (148)
T 1xho_A 44 NTADEIVAETQKLLKEMAEKNGLEEDDIISIIFTVTK 80 (148)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECT
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCC
Confidence 4689999999999999999999999999999998654
No 85
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=69.99 E-value=12 Score=37.68 Aligned_cols=80 Identities=19% Similarity=0.306 Sum_probs=53.8
Q ss_pred CCCCeEEEEEcccc--ceeEEEEcCCCC---EEEEEEeecccc------c--CCCcccc-C----HHHHHHHHHHHHHHH
Q 009384 52 RSRSVFLGVDVGTG--SARAGLFDESGK---LLGSASSPIQIW------K--EGDCIEQ-S----STDIWHAICAAVDSA 113 (536)
Q Consensus 52 m~~~~~lgIDiGTt--siKa~l~d~~g~---i~~~~~~~~~~~------~--~~g~~eq-d----~~~~~~~i~~~l~~~ 113 (536)
|+..++||+=-||| ++-+++++.+|+ +++..+.+||.. . .++..+. . ..++=+...++++++
T Consensus 2 ~~~~~~iGlMSGTSlDGiD~alv~~~~~~~~~~~~~~~pyp~~lr~~l~~~~~~~~~~~~~~~~l~~~lg~~~a~av~~~ 81 (370)
T 3cqy_A 2 MNKAYYIGLMSGTSMDGVDAVLVDFAGEQPQLIGTHTETIPTHLLKGLQRLCLPGTDEINRLGRLDRSVGKLFALAVNNL 81 (370)
T ss_dssp TTCCEEEEEEECTTCCCEEEEEEECSSSSCEEEEEEEECCCHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEecccchhhHeEEEEEEeCCeEEEEeeeeecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55568899999997 688899987654 777778888631 1 1221110 0 112334455778888
Q ss_pred HHHcCCCCCCEEEEEEcC
Q 009384 114 CSLANVDGEEVKGVGFAA 131 (536)
Q Consensus 114 ~~~~~~~~~~I~aIgis~ 131 (536)
+++.++++++|.+||.-+
T Consensus 82 l~~~~~~~~~i~~IGsHG 99 (370)
T 3cqy_A 82 LAKTKIAKDEIIAIGSHG 99 (370)
T ss_dssp HHHHCCCGGGEEEEEEEE
T ss_pred HHHcCCCcccccEEEeCC
Confidence 888898889999999933
No 86
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=69.75 E-value=2.2 Score=45.75 Aligned_cols=25 Identities=36% Similarity=0.655 Sum_probs=20.2
Q ss_pred CCCCeEEEEEccccceeEEEEcCCCC
Q 009384 52 RSRSVFLGVDVGTGSARAGLFDESGK 77 (536)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~~g~ 77 (536)
|++..++|||+|||+..+++++. |+
T Consensus 1 M~m~~~iGIDlGTt~s~va~~~~-g~ 25 (554)
T 1yuw_A 1 MSKGPAVGIDLGTTYSCVGVFQH-GK 25 (554)
T ss_dssp CCSCCCEEEEECSSEEEEEEECS-SS
T ss_pred CCCCCEEEEEeCcccEEEEEEEC-CE
Confidence 55556899999999999999863 54
No 87
>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A*
Probab=69.50 E-value=13 Score=38.02 Aligned_cols=33 Identities=9% Similarity=0.035 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCccEEEEecccc
Q 009384 492 ATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVFY 525 (536)
Q Consensus 492 AvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGgs 525 (536)
-++|-.+|.++..+-.+.. .| .++-|+++||..
T Consensus 308 lA~d~f~yri~k~IGa~aa~Lg-gvDaIVFTgGIG 341 (415)
T 2e1z_A 308 LAIKTFVHRIARHIAGHAASLH-RLDGIIFTGGIG 341 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCS-SCCEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCEEEECcccc
Confidence 5889999999988888776 54 589999999984
No 88
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=69.34 E-value=9.7 Score=41.21 Aligned_cols=52 Identities=10% Similarity=0.033 Sum_probs=35.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccccccccccccc
Q 009384 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTVRS 534 (536)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~~~ 534 (536)
-++.++..+++.+++.+.-.++..++...-...+++.|+++||+ ++.+-+++
T Consensus 300 itr~~~e~l~~~~~~~i~~~v~~~L~~a~~~~~~i~~VvLvGG~--sriP~v~~ 351 (605)
T 4b9q_A 300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQ--TRMPMVQK 351 (605)
T ss_dssp EEHHHHHHHHHHHHHHTTHHHHHHHHHTTCCGGGCSEEEEESGG--GGSHHHHH
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEeCCc--cCchHHHH
Confidence 34677777778888888777777666532223457899999997 55555543
No 89
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=68.41 E-value=13 Score=39.40 Aligned_cols=73 Identities=14% Similarity=0.071 Sum_probs=43.1
Q ss_pred CeEEEEEccccceeEEEEcCC-C--CEEEEEEeeccccc---CCCccccCHHHHHHHHHHHHHH---HHHHcCCCCCCEE
Q 009384 55 SVFLGVDVGTGSARAGLFDES-G--KLLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDS---ACSLANVDGEEVK 125 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~-g--~i~~~~~~~~~~~~---~~g~~eqd~~~~~~~i~~~l~~---~~~~~~~~~~~I~ 125 (536)
+.+.+||+||.|+|..|++.. + +++...+..+..-. ..|. .+++. .+.+++++++ .++..++ .+|.
T Consensus 15 ~~~AaIDiGSNS~rL~I~~~~~~~~~~~~~~k~~vrLg~gl~~~g~--Ls~ea-i~r~~~~L~~F~~~~~~~~v--~~v~ 89 (508)
T 3hi0_A 15 APVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGR--MHEEG-VTRALMALRRFHVLSEQAQA--QKLY 89 (508)
T ss_dssp CCEEEEEECSSEEEEEEESCSSSSCCEEEEEEEECCTTTTHHHHSS--CCHHH-HHHHHHHHHHHHHHHHHTTC--SEEE
T ss_pred CeEEEEEECCccEEEEEEEEcCCCceEEEEEeEEeecccCccccCC--cCHHH-HHHHHHHHHHHHHHHHhCCC--CeEE
Confidence 458999999999999999943 3 45554444333211 2222 23333 3444455544 4555543 5788
Q ss_pred EEEEcCC
Q 009384 126 GVGFAAT 132 (536)
Q Consensus 126 aIgis~~ 132 (536)
+++-++.
T Consensus 90 ~vATsA~ 96 (508)
T 3hi0_A 90 VLATAAA 96 (508)
T ss_dssp EEECTHH
T ss_pred EEeeHHH
Confidence 8887653
No 90
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=68.10 E-value=2.7 Score=42.52 Aligned_cols=51 Identities=8% Similarity=0.094 Sum_probs=34.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecccccccccccc
Q 009384 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTVR 533 (536)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~~ 533 (536)
-++.++..+++.+++.+.-.++..++........++.|+++||+ ++.+-++
T Consensus 310 i~r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~--s~~p~l~ 360 (394)
T 3qfu_A 310 LTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGS--TRIPKVQ 360 (394)
T ss_dssp EEHHHHHHHHHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGG--GGSHHHH
T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCc--cccHHHH
Confidence 34667766777888887777777666543223457899999998 4444443
No 91
>1dbf_A Protein (chorismate mutase); shikimate pathway, isomerase; 1.30A {Bacillus subtilis} SCOP: d.79.1.2 PDB: 1com_A 2chs_A 2cht_A* 1fnj_A 1fnk_A
Probab=67.50 E-value=6.4 Score=33.22 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=33.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 009384 97 QSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (536)
Q Consensus 97 qd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (536)
-+++++++++.+++.++++++++++++|.+|-||.+.
T Consensus 15 Nt~e~I~~at~eLl~~i~~~N~l~~~dIvSv~FT~T~ 51 (127)
T 1dbf_A 15 DTEEEILQKTKQLLEKIIEENHTKPEDVVQMLLSATP 51 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECT
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCC
Confidence 4689999999999999999999999999999998653
No 92
>3r9p_A ACKA; ssgcid, seattle structural genomics center for infectious DI acetate kinase, transferase; HET: PGE; 1.90A {Mycobacterium avium subsp} PDB: 3p4i_A 4dq8_A
Probab=67.10 E-value=25 Score=35.56 Aligned_cols=35 Identities=11% Similarity=-0.059 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccccc
Q 009384 491 LATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVFYL 526 (536)
Q Consensus 491 rAvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGgs~ 526 (536)
+-++|..+|.++..+-.+.. .| .++.|+++||..-
T Consensus 291 ~lA~d~f~yri~k~Iga~aa~Lg-~vDaIVfTGGIge 326 (391)
T 3r9p_A 291 QLAYSVFTHRLRKYIGAYLAVLG-HTDVISFTAGIGE 326 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-SCCEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECccccc
Confidence 46789999999888877655 56 6899999999854
No 93
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=65.94 E-value=8.4 Score=38.53 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=39.1
Q ss_pred CeEEEEEccccceeEEEEcC--CCCE--EEEEEeeccccc---CCCccccCHHHHHHHHHHHHHHHHHHcC-CCCCCEEE
Q 009384 55 SVFLGVDVGTGSARAGLFDE--SGKL--LGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSACSLAN-VDGEEVKG 126 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~--~g~i--~~~~~~~~~~~~---~~g~~eqd~~~~~~~i~~~l~~~~~~~~-~~~~~I~a 126 (536)
+.+.+||+||.|+|..|++. +|.+ +...+..+.+-. ..| ..++ +-.+.+++++++..+... ....+|.+
T Consensus 16 ~~~A~IDiGSNsiRL~I~~~~~~~~~~~i~~~k~~vrLg~g~~~~g--~ls~-eai~r~~~aL~~f~~~~~~~~v~~v~~ 92 (343)
T 3cer_A 16 VTVAGIDCGTNSIRLKIARVDADGMHEVVPRILRVIRLGQDVDKTH--RFAD-EALERAYVAAREFAGVIAEHPIDGLRF 92 (343)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTEEEEEEEEEEECCCTTTTHHHHS--SCCH-HHHHHHHHHHHHHHHHHTTSCCSEEEE
T ss_pred CeEEEEEcccceeEeEEEEEcCCCCEEEEEEEEEEeeCCCCccccC--CcCH-HHHHHHHHHHHHHHHHHHHCCCCeEEE
Confidence 46889999999999999984 3433 333233222211 112 2233 344555566666544322 11235665
Q ss_pred EEEcC
Q 009384 127 VGFAA 131 (536)
Q Consensus 127 Igis~ 131 (536)
++-++
T Consensus 93 vATsA 97 (343)
T 3cer_A 93 VATSA 97 (343)
T ss_dssp EECHH
T ss_pred EecHH
Confidence 55543
No 94
>1ufy_A Chorismate mutase; shikimate pathway, mutant, riken structur genomics/proteomics initiative, RSGI, structural genomics,; HET: MES; 0.96A {Thermus thermophilus} SCOP: d.79.1.2 PDB: 1ode_A* 1ui9_A*
Probab=65.90 E-value=8 Score=32.37 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=33.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEEcCCC
Q 009384 97 QSSTDIWHAICAAVDSACSLANVDG-EEVKGVGFAATC 133 (536)
Q Consensus 97 qd~~~~~~~i~~~l~~~~~~~~~~~-~~I~aIgis~~~ 133 (536)
-+++++++++.+++.++++++++++ ++|.+|-||.+.
T Consensus 14 n~~e~I~~at~eLl~~i~~~N~l~~~~divSv~FT~T~ 51 (122)
T 1ufy_A 14 DTPEAIHQATRELLLKMLEANGIQSYEELAAVIFTVTE 51 (122)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTCCCGGGEEEEEEEECT
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChHhEEEEEEEeCC
Confidence 4689999999999999999999999 999999998654
No 95
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=65.32 E-value=26 Score=37.19 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=42.3
Q ss_pred CeEEEEEccccceeEEEEc--CCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 009384 55 SVFLGVDVGTGSARAGLFD--ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d--~~g~i~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgi 129 (536)
+|+.|||||-+++-++|-+ .+|++...++--.+..--.| ..| -...+.++|++++++.+.+.+++.-|-+
T Consensus 2 ~~i~gvdign~tte~~la~~~~~~~~~f~~s~~~~ttg~kg-t~~----n~~g~~~~l~~~~~~~~~~~~~~~lir~ 73 (610)
T 2d0o_A 2 RYIAGIDIGNSSTEVALATLDEAGALTITHSALAETTGIKG-TLR----NVFGIQEALALVARGAGIAVSDISLIRI 73 (610)
T ss_dssp EEEEEEEECSSEEEEEEEEECTTCCEEEEEEEEEECCSSTT-STT----HHHHHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred cEEEEEecCCcchheeeeeecCCCceEEeeccccccCCccC-cHH----HHHHHHHHHHHHHHHcCCChhhceeeee
Confidence 6899999998888877754 34654444333332221112 122 2345667788888888877777766443
No 96
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=63.87 E-value=46 Score=33.36 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=34.5
Q ss_pred CCCcEEEEcCCC------CCChhHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCccEEEEecc-cc
Q 009384 468 PKSKGIICGMTL------DSSEKQLALLYLATVQGIAYGTRHIVEHCN-AHGHKVREHIFHSV-FY 525 (536)
Q Consensus 468 ~~arg~f~Gl~~------~~~~~~~~~~~rAvlEgia~~~r~~le~l~-~~g~~~~~I~~~GG-gs 525 (536)
.+...+-+|-.. ..+++|++ ++++.+|+..+..+.-... +.+.+ +|+++|| .+
T Consensus 257 ~~~~ASsFGk~~~~~~~~~~~~eDIa---~gll~sVa~~I~~lA~l~A~~~~i~--~IvftGgfla 317 (360)
T 2i7n_A 257 GSAVASSFGNMMSKEKRDSISKEDLA---RATLVTITNNIGSIARMCALNENID--RVVFVGNFLR 317 (360)
T ss_dssp TTSEEETTTTTTSHHHHTTCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHTCC--CEEEESGGGC
T ss_pred ccceeehhhhHhhHhhhcCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCC--eEEEeCcccc
Confidence 445555555542 45678865 5999999999877753322 24544 7999999 54
No 97
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*
Probab=63.86 E-value=6.4 Score=41.04 Aligned_cols=58 Identities=10% Similarity=0.215 Sum_probs=34.6
Q ss_pred CeEEEEEccccceeEEEEcC-CC-----CEEEEEEeecccccCCCc--cccCHHHHHHHHHHHHHHHH
Q 009384 55 SVFLGVDVGTGSARAGLFDE-SG-----KLLGSASSPIQIWKEGDC--IEQSSTDIWHAICAAVDSAC 114 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~-~g-----~i~~~~~~~~~~~~~~g~--~eqd~~~~~~~i~~~l~~~~ 114 (536)
+|.+.||+||+++|..|++- ++ .++.... .... ..+|- ...+|+.+.+.+..+++.+.
T Consensus 34 ~y~~vID~GSns~Rl~Vy~~~~~~~~~~~~~~~~~-~~~~-~~~Gls~~~~~pe~~~~~l~~Ll~~a~ 99 (456)
T 3cj1_A 34 KYGIVLDAGSSHTSMFVYKWPADKENDTGIVGQHS-SCDV-QGGGISSYANDPSKAGQSLVRCLEQAL 99 (456)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTSTTSTTCCEEEE-EEEC-SSSCGGGGTTSTHHHHHHTHHHHHHHH
T ss_pred eEEEEEEcCCCCeEEEEEEEcCCCCCCccceeeee-eeee-cccccccccCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999983 22 1222211 1111 01221 12468888777777766654
No 98
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=61.16 E-value=21 Score=28.63 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.7
Q ss_pred EEEEEccccceeEEEEcCCCCE
Q 009384 57 FLGVDVGTGSARAGLFDESGKL 78 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i 78 (536)
+||||+|+..+=+++-|..+.+
T Consensus 3 iLglD~G~kriGvAvsd~~~~~ 24 (98)
T 1iv0_A 3 VGALDVGEARIGLAVGEEGVPL 24 (98)
T ss_dssp EEEEEESSSEEEEEEECSCCSS
T ss_pred EEEEEeCCCEEEEEEEeCCCCe
Confidence 7999999999999999987643
No 99
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=61.01 E-value=29 Score=30.44 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=34.6
Q ss_pred eEEEEEccccceeEEEEcCCCCE---EEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 009384 56 VFLGVDVGTGSARAGLFDESGKL---LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA 117 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i---~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~~~~~~ 117 (536)
.+||||-|++++-.++++.+|+. +......++ . .+..+=+..+.+.+.+++++.
T Consensus 2 ~ILGIDPGl~~tG~gvi~~~g~~~~~v~~G~i~t~-~-------~~~~~Rl~~i~~~l~~~i~~~ 58 (158)
T 1hjr_A 2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-V-------DDLPSRLKLIYAGVTEIITQF 58 (158)
T ss_dssp EEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECC-C-------SCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCCCeeEEEEEecCCeEEEEEeeEEECC-C-------CCHHHHHHHHHHHHHHHHHHc
Confidence 38999999999999999977753 333333332 1 133333456666677777763
No 100
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=59.87 E-value=3.2 Score=41.82 Aligned_cols=50 Identities=10% Similarity=0.021 Sum_probs=29.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecccccccccccc
Q 009384 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTVR 533 (536)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~~ 533 (536)
+++++..+++..++.+.-.++..++...-....++.|+++||+ |+.+-++
T Consensus 301 t~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~IvL~GG~--s~~p~l~ 350 (383)
T 1dkg_D 301 TRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQ--TRMPMVQ 350 (383)
T ss_dssp EHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGG--GGSHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEecCc--cccHHHH
Confidence 4666665666666666555544443322112357899999998 4444443
No 101
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=58.82 E-value=8.9 Score=44.04 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=26.1
Q ss_pred CeEEEEEccc-----cceeEEEEcCCCCEEEEEEe
Q 009384 55 SVFLGVDVGT-----GSARAGLFDESGKLLGSASS 84 (536)
Q Consensus 55 ~~~lgIDiGT-----tsiKa~l~d~~g~i~~~~~~ 84 (536)
+.++|||-|- +.+|++++|++|+++.....
T Consensus 519 ~~VlaldpG~~~~~~~g~k~a~vd~~G~~l~~~~i 553 (1030)
T 3psf_A 519 PKILSLTCGQGRFGADAIIAVYVNRKGDFIRDYKI 553 (1030)
T ss_dssp CCEEEEECTTCCTTTSCEEEEEECTTSCEEEEEEE
T ss_pred CeEEEecCCCCCCCCCCeEEEEECCCCCEEEEEEE
Confidence 5799999984 48999999999999987765
No 102
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=57.54 E-value=6.9 Score=38.43 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=19.9
Q ss_pred EEEEEccccceeEEEEcCCCCEE
Q 009384 57 FLGVDVGTGSARAGLFDESGKLL 79 (536)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~i~ 79 (536)
.+|||+||+++|++..+.+|++.
T Consensus 2 ~igiD~G~sntK~~~~~~~g~~~ 24 (320)
T 2zgy_A 2 LVFIDDGSTNIKLQWQESDGTIK 24 (320)
T ss_dssp EEEEEECSSEEEEEEECSSSCEE
T ss_pred eEEEecCCccceEEEecCCCEEE
Confidence 68999999999999877788754
No 103
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=56.36 E-value=13 Score=37.50 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=50.2
Q ss_pred CeEEEEEcccc--ceeEEEEcCCC--CEEEEEEeecccc------c--CCCccccC-----HHHHHHHHHHHHHHHHHHc
Q 009384 55 SVFLGVDVGTG--SARAGLFDESG--KLLGSASSPIQIW------K--EGDCIEQS-----STDIWHAICAAVDSACSLA 117 (536)
Q Consensus 55 ~~~lgIDiGTt--siKa~l~d~~g--~i~~~~~~~~~~~------~--~~g~~eqd-----~~~~~~~i~~~l~~~~~~~ 117 (536)
.++||+=-||| ++-+++++.+| +++.....+|+.. . .++..+.+ -.++=+...+++++++++.
T Consensus 2 ~~~IGlMSGTSlDGID~alv~~~~~~~l~~~~~~py~~~lr~~l~~~~~~~~~~~~~~~~l~~~lg~~~a~av~~~l~~~ 81 (371)
T 3qbx_A 2 PRYLGLMSGTSLDGMDIVLIEQGDRTTLLASHYLPMPAGLREDILALCVPGPDEIARAAEVEQRWVALAAQGVRELLLQQ 81 (371)
T ss_dssp CEEEEEECCSSCSEEEEEEEEESSSEEEEEEEEEECCHHHHHHHHHTTSCCBTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEecccChhhhhEEEEEecCCceecceeeecCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 47899988886 67788888655 5667777787631 0 21211100 1222344556788888888
Q ss_pred CCCCCCEEEEEEcC
Q 009384 118 NVDGEEVKGVGFAA 131 (536)
Q Consensus 118 ~~~~~~I~aIgis~ 131 (536)
++++++|.+||.-+
T Consensus 82 ~~~~~~Id~IGsHG 95 (371)
T 3qbx_A 82 QMSPDEVRAIGSHG 95 (371)
T ss_dssp TCCGGGCCEEEECC
T ss_pred CCCcccccEEEeCC
Confidence 88888999999943
No 104
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=55.52 E-value=2.6 Score=39.56 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=11.0
Q ss_pred EEEEccccce--------eEEEEcCCCCEE
Q 009384 58 LGVDVGTGSA--------RAGLFDESGKLL 79 (536)
Q Consensus 58 lgIDiGTtsi--------Ka~l~d~~g~i~ 79 (536)
=|+|+||.++ |++|||.||.++
T Consensus 9 ~~~~~~~~~~~~~~~~MIKaViFDlDGTLv 38 (250)
T 4gib_A 9 SGVDLGTENLYFQSNAMIEAFIFDLDGVIT 38 (250)
T ss_dssp ---------------CCCCEEEECTBTTTB
T ss_pred ccccCCCCCcccCccchhheeeecCCCccc
Confidence 4899999997 899999999876
No 105
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=55.02 E-value=5.3 Score=40.51 Aligned_cols=50 Identities=6% Similarity=0.101 Sum_probs=33.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecccccccccccc
Q 009384 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTVR 533 (536)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~~ 533 (536)
++.++..+++.+++.+.-.++..++........++.|+++||+ ++.+-++
T Consensus 319 ~r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~--s~~p~l~ 368 (404)
T 3i33_A 319 TRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGS--TRIPKIQ 368 (404)
T ss_dssp EHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGG--GGCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEECCc--cccHHHH
Confidence 4667666677777777776666666543223467899999998 4444443
No 106
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=52.71 E-value=7.1 Score=42.29 Aligned_cols=18 Identities=28% Similarity=0.663 Sum_probs=16.4
Q ss_pred eEEEEEccccceeEEEEc
Q 009384 56 VFLGVDVGTGSARAGLFD 73 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d 73 (536)
.++|||+|||+.++++++
T Consensus 3 ~viGIDlGTT~S~Va~~~ 20 (605)
T 4b9q_A 3 KIIGIDLGTTNSCVAIMD 20 (605)
T ss_dssp CEEEEECCSSEEEEEEEE
T ss_pred cEEEEEcCCCcEEEEEEE
Confidence 589999999999999875
No 107
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=50.78 E-value=23 Score=35.46 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=17.7
Q ss_pred CeEEEEEccccceeEEEEc
Q 009384 55 SVFLGVDVGTGSARAGLFD 73 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d 73 (536)
+++++||+||+++|..|++
T Consensus 3 ~~~avID~GSns~Rl~I~~ 21 (353)
T 3aap_A 3 SCIAVIDAGSTGSRLHIYS 21 (353)
T ss_dssp EEEEEEEECSSCEEEEEEE
T ss_pred CEEEEEEcCCCCeEEEEEE
Confidence 5789999999999999998
No 108
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=50.66 E-value=32 Score=40.26 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=26.1
Q ss_pred CeEEEEEccc-----cceeEEEEcCCCCEEEEEEe
Q 009384 55 SVFLGVDVGT-----GSARAGLFDESGKLLGSASS 84 (536)
Q Consensus 55 ~~~lgIDiGT-----tsiKa~l~d~~g~i~~~~~~ 84 (536)
+.++|||-|- +.+|++++|++|+++.....
T Consensus 516 ~~VlaldpG~r~~g~~g~k~a~vD~~G~vl~~~~i 550 (1219)
T 3psi_A 516 PKILSLTCGQGRFGADAIIAVYVNRKGDFIRDYKI 550 (1219)
T ss_dssp CCEEEEECTTCCTTTTCEEEEEECTTSCEEEEEEE
T ss_pred CeEEEecCCCCCCCCCceEEEEECCCCCEEEEEEE
Confidence 5799999985 48999999999999987765
No 109
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=46.82 E-value=10 Score=39.94 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=30.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecccccccccccc
Q 009384 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTVR 533 (536)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~~ 533 (536)
+++++..+++.+++.+.-.++..++...-....++.|+++||+ ++.+-++
T Consensus 270 tr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~--s~~p~v~ 319 (509)
T 2v7y_A 270 TRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGS--TRIPAVQ 319 (509)
T ss_dssp EHHHHHHHTHHHHHTTHHHHHHHHHHHTCCGGGCSEEEEESGG--GGCHHHH
T ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHCcEEEEECCc--ccChHHH
Confidence 4666665666667666655555555432112357899999998 4444443
No 110
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*
Probab=44.67 E-value=22 Score=36.98 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=35.8
Q ss_pred CCeEEEEEccccceeEEEEcC-CCC-----EEEEEEeecccccCCCc--cccCHHHHHHHHHHHHHHHHH
Q 009384 54 RSVFLGVDVGTGSARAGLFDE-SGK-----LLGSASSPIQIWKEGDC--IEQSSTDIWHAICAAVDSACS 115 (536)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~-~g~-----i~~~~~~~~~~~~~~g~--~eqd~~~~~~~i~~~l~~~~~ 115 (536)
.+|.+.||+|+|++|+.||.- ..+ ++... ..... ..||- ...+|+...+.+..+++.+.+
T Consensus 33 ~~y~iviDaGSsgtRl~VY~~~~~~~~~~~~~~~~-~~~k~-~gpGlSs~~~~p~~~~~~l~~Ll~~a~~ 100 (452)
T 3zx3_A 33 VKYGIVLDAGSSHTNLYIYKWPAEKENDTGVVQQL-EECQV-KGPGISKYAQKTDEIAAYLAECMKMSTE 100 (452)
T ss_dssp EEEEEEEEECSSCEEEEEEEEECCCTTCCCCCEEE-EEEEC-SSSCGGGGTTCGGGHHHHHHHHHHHHHH
T ss_pred ceEEEEEEcCCCCcEEEEEEEeCCcCCCcccccee-eeecc-cCCChhccCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999973 211 22111 00011 12441 223788888777777766554
No 111
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=44.20 E-value=1.1e+02 Score=29.37 Aligned_cols=41 Identities=7% Similarity=0.042 Sum_probs=28.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCccEEEEecc-cc
Q 009384 480 DSSEKQLALLYLATVQGIAYGTRHIVEHCN-AHGHKVREHIFHSV-FY 525 (536)
Q Consensus 480 ~~~~~~~~~~~rAvlEgia~~~r~~le~l~-~~g~~~~~I~~~GG-gs 525 (536)
...++|++ ++++.+|+..+..+..... +.+ +++|+++|| .+
T Consensus 206 g~~~eDIa---asl~~sV~~~I~~la~~~a~~~~--i~~Vvf~Gg~l~ 248 (287)
T 2ews_A 206 DFTPSNKL---AAVIGVVGEVVTTMAITVAREFK--TENIVYIGSSFH 248 (287)
T ss_dssp CCCHHHHH---HHHHHHHHHHHHHHHHHHHHHTT--CCEEEEESGGGT
T ss_pred CCCHHHHH---HHHHHHHHHHHHHHHHHHHHhCC--CCeEEEeCCchh
Confidence 45688865 5999999888776654332 234 447999998 53
No 112
>3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp}
Probab=43.11 E-value=26 Score=35.38 Aligned_cols=34 Identities=9% Similarity=0.044 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEecccc
Q 009384 491 LATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVFY 525 (536)
Q Consensus 491 rAvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGgs 525 (536)
+-++|..+|.++..+-.+.. .+ .++-|+++||..
T Consensus 290 ~lA~d~f~yri~k~IGa~aa~L~-gvDaIVFTgGIg 324 (384)
T 3khy_A 290 KLAIEIFSHRVAKFVASYMIYFN-KLDALVFTGGIG 324 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCS-SCCEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccc
Confidence 36789999999988887765 56 799999999984
No 113
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=42.28 E-value=10 Score=41.58 Aligned_cols=50 Identities=10% Similarity=0.059 Sum_probs=30.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecccccccccccc
Q 009384 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLSQSRTVR 533 (536)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s~~~~~~ 533 (536)
++.++..+++.+++.+.-.++..++...-...+++.|+++||+ ++.+.++
T Consensus 302 tr~~fe~l~~~l~~~i~~~i~~~L~~a~l~~~~I~~VvLvGGs--sriP~v~ 351 (675)
T 3d2f_A 302 SREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGT--TRIPTLK 351 (675)
T ss_dssp EHHHHHHHTHHHHTTTTHHHHHHHHHHTCCGGGCCEEEEESGG--GGSHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhCcEEEEECCC--ccChHHH
Confidence 4666665666666666555555554432112357899999997 5554443
No 114
>4h0p_A Acetate kinase; askha (acetate and sugar kinas actin) superfamily, ribonuclease H-like fold, transferase; 1.89A {Cryptococcus neoformans}
Probab=41.64 E-value=25 Score=36.09 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=24.8
Q ss_pred CeEEEEEccccceeEEEEc-CCCCEEEEEEe
Q 009384 55 SVFLGVDVGTGSARAGLFD-ESGKLLGSASS 84 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d-~~g~i~~~~~~ 84 (536)
+.+|.|..|+||+|..||| .+.+++++...
T Consensus 6 ~~ILviNaGSSSlKf~L~~~~~~~~l~~G~v 36 (438)
T 4h0p_A 6 EYLLAINCGSSSIKGKLFAIPSFELLANLAV 36 (438)
T ss_dssp EEEEEEEECSSCEEEEEEEETTTEEEEEEEE
T ss_pred CEEEEEECCcccceeEEEEcCCCCeeeEEEE
Confidence 5799999999999999999 56677766644
No 115
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=40.59 E-value=11 Score=40.75 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=17.3
Q ss_pred eEEEEEccccceeEEEEcCCCC
Q 009384 56 VFLGVDVGTGSARAGLFDESGK 77 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~ 77 (536)
.++|||+|||+.++++++ +|+
T Consensus 3 ~viGIDlGTt~s~va~~~-~g~ 23 (605)
T 2kho_A 3 KIIGIDLGTTNSCVAIMD-GTT 23 (605)
T ss_dssp -CEEEECCSSEEEEEEEE-TTE
T ss_pred CEEEEEcCCcCEEEEEEE-CCE
Confidence 379999999999999986 453
No 116
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=40.59 E-value=13 Score=36.72 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=27.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----C-c-cEEEEecccccccccccc
Q 009384 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH----K-V-REHIFHSVFYLSQSRTVR 533 (536)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~le~l~~~g~----~-~-~~I~~~GGgs~s~~~~~~ 533 (536)
+++++..+++..++.+.-.++..++. .+. + + +.|+++||+ |+.+.++
T Consensus 242 ~~~~~~~~~~~~~~~i~~~i~~~l~~---~~~~~~~~~~~~~IvL~GG~--s~~p~l~ 294 (344)
T 1jce_A 242 KGGEVREALRSVVVAIVESVRTTLEK---TPPELVSDIIERGIFLTGGG--SLLRGLD 294 (344)
T ss_dssp EHHHHHHHTHHHHHHHHHHHHHHHHT---SCHHHHHHHHHHCEEEESGG--GCSBTHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHh---CCchhccchhhCcEEEECcc--ccchHHH
Confidence 45666556666666665555554443 321 1 2 589999998 4444443
No 117
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=38.17 E-value=14 Score=37.37 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=18.9
Q ss_pred CCCCCCeEEEEEccccceeEEEEcCCCC
Q 009384 50 PARSRSVFLGVDVGTGSARAGLFDESGK 77 (536)
Q Consensus 50 ~~m~~~~~lgIDiGTtsiKa~l~d~~g~ 77 (536)
+.|+ ++++|||+|||+++++++ .+|+
T Consensus 9 ~~m~-~~vvGIDlGTt~s~va~~-~~g~ 34 (409)
T 4gni_A 9 APGE-RVVIGITFGNSNSSIAHT-VDDK 34 (409)
T ss_dssp -----CCEEEEEECSSEEEEEEE-ETTE
T ss_pred CCCC-CcEEEEEcCCCeEEEEEE-eCCc
Confidence 3455 689999999999999998 4554
No 118
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=38.09 E-value=29 Score=29.70 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.5
Q ss_pred eEEEEEccccceeEEEEcCCCCE
Q 009384 56 VFLGVDVGTGSARAGLFDESGKL 78 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~i 78 (536)
.+||||+|+..+=+++-|..+.+
T Consensus 4 ~iLglD~G~kriGvAvsd~~~~~ 26 (138)
T 1nu0_A 4 TLMAFDFGTKSIGVAVGQRITGT 26 (138)
T ss_dssp EEEEEECCSSEEEEEEEETTTTE
T ss_pred eEEEEEeCCCEEEEEEEcCCCCE
Confidence 48999999999999999987654
No 119
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=37.42 E-value=15 Score=36.18 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=18.0
Q ss_pred CCCCCCeEEEEEccccceeEEEE
Q 009384 50 PARSRSVFLGVDVGTGSARAGLF 72 (536)
Q Consensus 50 ~~m~~~~~lgIDiGTtsiKa~l~ 72 (536)
..|..+++||||+|-.++|++-.
T Consensus 2 ~~~~~~~iigiD~G~~~~K~~~~ 24 (329)
T 4apw_A 2 ENITNEYVMTLDAGKYETKLIGK 24 (329)
T ss_dssp ---CCEEEEEEEECSSEEEEEEH
T ss_pred CCccCceEEEEecCCceEEEEec
Confidence 35666899999999999999863
No 120
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=36.96 E-value=18 Score=36.20 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=18.6
Q ss_pred CeEEEEEccccceeEEEEcCCCC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGK 77 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~ 77 (536)
..++|||+|||++++++++ +|+
T Consensus 18 ~~viGID~GTt~s~va~~~-~g~ 39 (394)
T 3qfu_A 18 GTVIGIDLGTTYSCVAVMK-NGK 39 (394)
T ss_dssp CSCEEEEECSSEEEEEEEC-SSC
T ss_pred CCEEEEEeCcCcEEEEEEE-CCe
Confidence 4689999999999999986 454
No 121
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=36.60 E-value=29 Score=26.54 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=24.5
Q ss_pred CHHHHHHcCCCCcccccccccCccccCCCCcccCCccHHHHHHcCCCCCC
Q 009384 264 DDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGT 313 (536)
Q Consensus 264 ~~~ll~~~Gi~~~~~~~~p~l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~ 313 (536)
-+++|+.+++.+..+ |+|- .++.+|+.+|+..|-
T Consensus 22 k~~lL~~y~i~~~qL---P~I~-------------~~DPvar~~G~k~Gd 55 (77)
T 1eik_A 22 AKRVLKELDAHPEQL---PKIK-------------TTDPVAKAIGAKRGD 55 (77)
T ss_dssp HHHHHHHTTCCTTTS---CCCB-------------TTSHHHHGGGCCTTC
T ss_pred HHHHHHHcCCCHHHC---Ceee-------------CcCHhhHHhCCCCCC
Confidence 357899999988655 6443 567778888887664
No 122
>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A*
Probab=36.41 E-value=32 Score=35.05 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCccEEEEecccc
Q 009384 492 ATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVFY 525 (536)
Q Consensus 492 AvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGgs 525 (536)
-++|-.+|.++..+-.+.. +| .++-|+++||..
T Consensus 300 lA~d~f~yri~k~IGa~~a~Lg-gvDaiVFTgGIG 333 (408)
T 1g99_A 300 LALEIFAYKVKKFIGEYSAVLN-GADAVVFTAGIG 333 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-SCSEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhC-CCCEEEECcccc
Confidence 5789999999988877765 54 588999999984
No 123
>2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima}
Probab=35.66 E-value=34 Score=34.84 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCccEEEEecccc
Q 009384 492 ATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVFY 525 (536)
Q Consensus 492 AvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGgs 525 (536)
-++|-.+|.++..+-.+.. .| .++-|+++||..
T Consensus 300 lA~d~f~yri~k~IGa~~a~Lg-gvDaIVFTgGIG 333 (403)
T 2iir_A 300 LVLEIYDYRIAKYIGAYAAAMN-GVDAIVFTAGVG 333 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-CCSEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCEEEECcccc
Confidence 5788899999888877765 56 689999999984
No 124
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=33.33 E-value=19 Score=36.27 Aligned_cols=22 Identities=36% Similarity=0.675 Sum_probs=18.4
Q ss_pred CeEEEEEccccceeEEEEcCCCC
Q 009384 55 SVFLGVDVGTGSARAGLFDESGK 77 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~ 77 (536)
..++|||+|||++++++++ +|+
T Consensus 23 ~~viGID~GTt~s~va~~~-~g~ 44 (404)
T 3i33_A 23 MPAIGIDLGTTYSCVGVFQ-HGK 44 (404)
T ss_dssp CCCEEEEECSSEEEEEEEE-TTE
T ss_pred CCEEEEEcCCccEEEEEEE-CCe
Confidence 4589999999999999986 443
No 125
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=32.30 E-value=22 Score=35.25 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=17.9
Q ss_pred CeEEEEEccccceeEEEEcCCCCEE
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLL 79 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~ 79 (536)
...+|||+||+++|++. .+|.++
T Consensus 21 m~~igiDlG~~~tkv~~--~~g~~~ 43 (346)
T 2fsj_A 21 MVVVGLDVGYGDTKVIG--VDGKRI 43 (346)
T ss_dssp CEEEEEEECSSEEEEEC--GGGCEE
T ss_pred eEEEEEecCCcceeEEe--cCCCEE
Confidence 36899999999999874 446554
No 126
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*
Probab=30.23 E-value=14 Score=30.55 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=27.5
Q ss_pred HHHH-HHHHHhCchhHhhhceeecchhHHHhhhh
Q 009384 193 PPKL-LWVKENLQESWSMVFRWMDLSDWLSYRAT 225 (536)
Q Consensus 193 ~~kl-~wl~~~~Pe~~~~~~~~l~~~dyl~~~LT 225 (536)
..|+ .|+++|..+++.|...-..=.|||.|.+|
T Consensus 78 ~akvekwf~rnc~~v~gr~cta~EK~d~l~~l~~ 111 (112)
T 1dw0_A 78 SARVEKWLGRNCNSVIGRDCTPGEKADLLAWLAA 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHcccCCHHHHHHHHHHHHh
Confidence 4444 49999999999988877778999999886
No 127
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=30.13 E-value=24 Score=35.20 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=17.6
Q ss_pred eEEEEEccccceeEEEEcCCCC
Q 009384 56 VFLGVDVGTGSARAGLFDESGK 77 (536)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~ 77 (536)
.++|||+|||++++++++ +|+
T Consensus 3 ~~vGIDlGTt~s~va~~~-~g~ 23 (383)
T 1dkg_D 3 KIIGIDLGTTNSCVAIMD-GTT 23 (383)
T ss_dssp CCCEEECCSSEEEEEEEE-TTE
T ss_pred cEEEEEcCCCCEEEEEEE-CCe
Confidence 478999999999999986 353
No 128
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=29.78 E-value=28 Score=26.71 Aligned_cols=36 Identities=17% Similarity=0.073 Sum_probs=25.5
Q ss_pred CCCHHHHHHcCCCCcccccccccCccccCCCCcccCCccHHHHHHcCCCCCC
Q 009384 262 GWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGT 313 (536)
Q Consensus 262 ~W~~~ll~~~Gi~~~~~~~~p~l~~~i~~~g~~~G~~v~~~~a~~~GL~~g~ 313 (536)
+--+++|+.+++.+..+ |+|- .++.+|+.+|+..|-
T Consensus 18 eEk~~lL~~y~i~~~qL---PrI~-------------~~DPvar~~G~k~Gd 53 (78)
T 1hmj_A 18 EEVEEILKRYNIKIQQL---PKIY-------------EDDPVIQEIGAKEGD 53 (78)
T ss_pred HHHHHHHHHcCCCHHHC---Ceee-------------CcCHhhHHhCCCCCC
Confidence 34457999999988655 6443 466777888887764
No 129
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=28.49 E-value=47 Score=32.91 Aligned_cols=44 Identities=5% Similarity=-0.160 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCCccEEEEeccccc
Q 009384 483 EKQLALLYLATVQGIAYGTRHIVEHCNA-H-GHKVREHIFHSVFYL 526 (536)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~le~l~~-~-g~~~~~I~~~GGgs~ 526 (536)
+.++..+++..++.++-.++..++.+.. . ...++.|+++||++.
T Consensus 273 ~~~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~ 318 (377)
T 2ych_A 273 PGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSK 318 (377)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECcccc
Confidence 3445556778899999999998887643 2 456899999999843
No 130
>4h0o_A Acetate kinase; askha (acetate and S kinase, HSC70, actin) superfamily, ribonuclease H-like fold transferase; 2.40A {Entamoeba histolytica}
Probab=28.37 E-value=55 Score=33.22 Aligned_cols=33 Identities=6% Similarity=-0.033 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEeccc
Q 009384 491 LATVQGIAYGTRHIVEHCNA-HGHKVREHIFHSVF 524 (536)
Q Consensus 491 rAvlEgia~~~r~~le~l~~-~g~~~~~I~~~GGg 524 (536)
+-++|..+|.++..+-.+.. .+. ++-|+++||.
T Consensus 303 ~lA~d~f~yri~k~IGa~aa~L~G-vDaIVFTgGI 336 (404)
T 4h0o_A 303 QLAFDVYIKQLAKTIGGLMVEIGG-LDLLVFTDQM 336 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC-CSEEEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CCEEEECCcc
Confidence 36789999999988877755 455 8999999997
No 131
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=26.29 E-value=26 Score=32.95 Aligned_cols=41 Identities=2% Similarity=0.019 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecccccc
Q 009384 483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVREHIFHSVFYLS 527 (536)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~le~l~~~g~~~~~I~~~GGgs~s 527 (536)
+.++..+++.+++.++..++..++. .+ .++.|+++||++..
T Consensus 199 ~~~~~~~~~~~~~~i~~~i~~~l~~---~~-~~~~ivL~GG~a~~ 239 (272)
T 3h1q_A 199 HREIMRVVRPVIEKMALIVKEVIKN---YD-QTLPVYVVGGTAYL 239 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT---SC-SSCCEEEESGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cC-CCCEEEEECCccch
Confidence 4555556677777776655554432 22 36799999998543
No 132
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=24.78 E-value=72 Score=32.52 Aligned_cols=45 Identities=11% Similarity=0.058 Sum_probs=32.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCCccEEEEeccccc
Q 009384 482 SEKQLALLYLATVQGIAYGTRHIVEHCNA------HGHKVREHIFHSVFYL 526 (536)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~le~l~~------~g~~~~~I~~~GGgs~ 526 (536)
++.++..+++..+|-+.-.++..++...- ....++.|+++||+|.
T Consensus 290 s~~~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~ 340 (419)
T 4a2a_A 290 TAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAK 340 (419)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhc
Confidence 46677778889999998888888877643 2335778999999843
No 133
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=23.41 E-value=89 Score=30.45 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=26.4
Q ss_pred CeEEEEEccccceeEEEEcCCCCEEEEEEeecc
Q 009384 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQ 87 (536)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~i~~~~~~~~~ 87 (536)
.-.+.+|||+.|+-.++++ ++++....+.++.
T Consensus 131 ~~~lviDIGGGStEl~~~~-~~~~~~~~Sl~lG 162 (315)
T 3mdq_A 131 HISLAMDIGGGSVEFIIGN-KNEILWKQSFEIG 162 (315)
T ss_dssp CCEEEEEECSSCEEEEEEC-SSCEEEEEEESCC
T ss_pred CCEEEEEeCCCceEEEEEE-CCeEeeeEEEech
Confidence 3478899999999999997 5788887777764
No 134
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=22.20 E-value=2.8e+02 Score=23.53 Aligned_cols=83 Identities=12% Similarity=0.046 Sum_probs=51.4
Q ss_pred EEEEcc--ccceeEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCC--CCEEEEEEcCC
Q 009384 58 LGVDVG--TGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDG--EEVKGVGFAAT 132 (536)
Q Consensus 58 lgIDiG--TtsiKa~l~d~~g~i~~~~~~~~~~~~-~~g~~eqd~~~~~~~i~~~l~~~~~~~~~~~--~~I~aIgis~~ 132 (536)
|++|.- -+.+|..+.=..|..+........... .-|.+.++++++.+.+...+..+.+..+... ..|..|.|+++
T Consensus 47 L~vDprk~dq~vrgtV~LP~gg~v~fr~dk~~~ih~~VGk~sf~~e~L~eNi~a~i~~l~~~kp~~~kg~~ik~v~issT 126 (137)
T 2ov7_A 47 LGIDPRRSDQNVRGTVSLPHGGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTT 126 (137)
T ss_dssp ESSCTTCSSCCCEEEEECTTSCEEEEECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTSCSSCCSCSEEEEEEEET
T ss_pred eCCCCccccceeeEEEEcCCCCeEEEEECCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHhCcccccCceEEEEEEECC
Confidence 344442 356777777666622221111222222 4577889999999999999988887644322 47999999874
Q ss_pred -CCeEEEcC
Q 009384 133 -CSLVAVDA 140 (536)
Q Consensus 133 -~~~v~vD~ 140 (536)
.--+.+|.
T Consensus 127 MGp~i~id~ 135 (137)
T 2ov7_A 127 MGPSVRINP 135 (137)
T ss_dssp TSCCEEBCT
T ss_pred CCCCEEecC
Confidence 32344664
No 135
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=20.51 E-value=1.5e+02 Score=27.18 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=33.1
Q ss_pred CccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 009384 93 DCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (536)
Q Consensus 93 g~~eqd~~~~~~~i~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (536)
|...++++++.+.+...+..+.+..+. ...|.+|-++++
T Consensus 170 G~~~~~~e~L~eNi~a~i~~l~~~~p~-~~~ik~v~lksT 208 (217)
T 1mzp_A 170 GTEDMKPEDLAENAIAVLNAIENKAKV-ETNLRNIYVKTT 208 (217)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHCCC-TTTEEEEEEEET
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHhCcc-chheEEEEEECC
Confidence 556789999999999999998887665 578999999875
Done!