BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009385
(536 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFS 473
DY + YQ L +PN+ N Y DY +A EY+++A+ ++P +A+++
Sbjct: 23 GDYQKAIEYYQKALELDPNNASAWYNLGN-AYYKQGDYQKAIEYYQKALELDPNNAKAWY 81
Query: 474 KYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYAN 512
+ + ++ + D A E + +A+ DP N+ N N
Sbjct: 82 RRGNAYYK-QGDYQKAIEDYQKALELDPNNAKAKQNLGN 119
Score = 32.7 bits (73), Expect = 0.57, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 445 YIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNS 504
Y DY +A EY+++A+ ++P +A ++ + ++ + D A E + +A+ DP N+
Sbjct: 19 YYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYK-QGDYQKAIEYYQKALELDPNNA 77
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 445 YIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNS 504
Y DYD A EY+++A+ ++P +AE++ + ++ + D A E + +A+ DP N+
Sbjct: 19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNA 77
Query: 505 YYAANYANFLWNTGGED 521
N N + G D
Sbjct: 78 EAWYNLGNAYYKQGDYD 94
Score = 32.7 bits (73), Expect = 0.47, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 380 DEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLAN 439
DEA + LD E + + A + DY + YQ L +PN+ N
Sbjct: 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE---YYQKALELDPNNAEAWYN 82
Query: 440 YAQFLYIVAHDYDRAEEYFKRAIAVEPPDAES 471
Y DYD A EY+++A+ ++P +AE+
Sbjct: 83 LGN-AYYKQGDYDEAIEYYQKALELDPNNAEA 113
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 36.6 bits (83), Expect = 0.034, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 445 YIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNS 504
Y DYD A EY+++A+ ++P +AE++ + ++ + D A E + +A+ DP N+
Sbjct: 19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNA 77
Query: 505 YYAANYAN 512
N N
Sbjct: 78 EAKQNLGN 85
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 407 NIEADDY-----ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRA 461
N++++D+ +Y L L PND L A+ LY ++++YD A +RA
Sbjct: 140 NVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG-VLYNLSNNYDSAAANLRRA 198
Query: 462 IAVEPPDAESFSKYASFL 479
+ + P DA+ ++K + L
Sbjct: 199 VELRPDDAQLWNKLGATL 216
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 407 NIEADDY-----ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRA 461
N++++D+ +Y L L PND L A+ LY ++++YD A +RA
Sbjct: 140 NVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG-VLYNLSNNYDSAAANLRRA 198
Query: 462 IAVEPPDAESFSKYASFL 479
+ + P DA+ ++K + L
Sbjct: 199 VELRPDDAQLWNKLGATL 216
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 445 YIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNS 504
Y DYD A EY+++A+ ++P AE++ + ++ + D A E + +A+ DP ++
Sbjct: 11 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRSA 69
Query: 505 YYAANYANFLWNTGGED 521
N N + G D
Sbjct: 70 EAWYNLGNAYYKQGDYD 86
Score = 32.7 bits (73), Expect = 0.52, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 380 DEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLAN 439
DEA + LD + E + + A + DY + YQ L +P N
Sbjct: 18 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE---YYQKALELDPRSAEAWYN 74
Query: 440 YAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISA 499
Y DYD A EY+++A+ ++P AE++ + ++ + D A E + +A+
Sbjct: 75 LGN-AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALEL 132
Query: 500 DP 501
DP
Sbjct: 133 DP 134
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 445 YIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNS 504
Y DYD A EY+++A+ + P +AE++ + ++ + D A E + +A+ P N+
Sbjct: 19 YYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELYPNNA 77
Query: 505 YYAANYANFLWNTGGED 521
N N + G D
Sbjct: 78 EAWYNLGNAYYKQGDYD 94
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAES 471
DY YQ L PN+ N Y DYD A EY+++A+ + P +AE+
Sbjct: 57 GDYDEAIEYYQKALELYPNNAEAWYNLGN-AYYKQGDYDEAIEYYQKALELYPNNAEA 113
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 445 YIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADP 501
Y DYD A EY+++A+ ++P AE++ + ++ + D A E + +A+ DP
Sbjct: 13 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDP 68
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 445 YIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNS 504
Y+ + ++A+ ++A+ ++P A++ + A +++ + A+E + +A+++D N+
Sbjct: 60 YLQRGNTEQAKVPLRKALEIDPSSADAHAALA-VVFQTEMEPKLADEEYRKALASDSRNA 118
Query: 505 YYAANYANFLW 515
NY FL+
Sbjct: 119 RVLNNYGGFLY 129
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 19/113 (16%)
Query: 155 LSLRIIK--RKLQWQD-GFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREI--LFYE 209
L +R+++ R+ ++++ FR+A ES S+ AFS +VF + L F + M I L++
Sbjct: 210 LGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFAL-PLFIFIVNMGMIAVLWF- 267
Query: 210 DLQGILVRVQREMHASFV----WLFQQVFSHTPTLMVYVMILLANFTVHSMAS 258
G+LVR + S + +L Q +FS LM+ IL NF V + AS
Sbjct: 268 --GGVLVRNNQMEIGSIMAYTNYLMQIMFS----LMMIGNIL--NFIVRASAS 312
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 445 YIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNS 504
Y+ + ++A+ ++A+ ++P A++ + A +++ + A+E + +A+++D N+
Sbjct: 47 YLQRGNTEQAKVPLRKALEIDPSSADAHAALA-VVFQTEXEPKLADEEYRKALASDSRNA 105
Query: 505 YYAANYANFLW 515
NY FL+
Sbjct: 106 RVLNNYGGFLY 116
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|A Chain A, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|B Chain B, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|C Chain C, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 578
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 158 RIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFII 192
RII+ Q+ + E AYCS+KKA+ M I+
Sbjct: 488 RIIREDFLQQNAYHEV--DAYCSMKKAYGIMKMIL 520
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 441 AQFLYIVAHDYDR------AEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFL 494
AQ LY YD A F +A+A+ P E F+ +L + N AA E F
Sbjct: 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGN-FDAAYEAFD 101
Query: 495 EAISADPTNSYYAANYANFLWNTGGEDTC 523
+ DPT +Y N L+ GG D
Sbjct: 102 SVLELDPTYNYAHLNRGIALY-YGGRDKL 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,164,768
Number of Sequences: 62578
Number of extensions: 479732
Number of successful extensions: 1249
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1226
Number of HSP's gapped (non-prelim): 24
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)