BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009385
(536 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54NS3|Y5095_DICDI TPR repeat-containing protein DDB_G0285095 OS=Dictyostelium
discoideum GN=DDB_G0285095 PE=4 SV=1
Length = 263
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 427 LAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDL 486
+A + +D LL +YA F+ + + D+AE+ +KR + +ES +Y FL V+ D+
Sbjct: 155 IALDEDDSSLLLSYAIFIQ-KSGEIDKAEKLYKRIVTSGARSSESLGRYGLFLLEVKKDV 213
Query: 487 WAAEETFLEAISADPTNSYYAANYANFL 514
+A DP + + Y+N+L
Sbjct: 214 EKGGIYLKDAADIDPPSPEWCTRYSNYL 241
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 426 GLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRND 485
GL ++P D LLA Y L + + + AEE ++A+ V+ ++ ++ Y FL R N+
Sbjct: 79 GLQEQPQDSDLLAQYGVLLSMEGKNKE-AEESLRKAVEVDTDNSRAWQAYGEFLERT-NN 136
Query: 486 LWAAEETFLEA-------ISADPTNSYYAANYANFLWNTGGEDTCFPL 526
A+E + EA I+ D +S +YA F+ +G D L
Sbjct: 137 PKKAKEVYGEAYKHAAPKIALDEDDSSLLLSYAIFIQKSGEIDKAEKL 184
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 437 LANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA 489
L Y FL V D ++ Y K A ++PP E ++Y+++L + D + A
Sbjct: 199 LGRYGLFLLEVKKDVEKGGIYLKDAADIDPPSPEWCTRYSNYLKTYKKDEFEA 251
>sp|B0W429|FICD_CULQU Adenosine monophosphate-protein transferase FICD homolog OS=Culex
quinquefasciatus GN=CPIJ001789 PE=3 SV=1
Length = 500
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 452 DRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAAN 509
D+A F+ A+A+ P E +KY FL + D+ A+ + +A++ +P++S AN
Sbjct: 139 DKALRLFQHAMALSPRHPEILTKYGEFLEHSQQDIVTADHYYYQALTVNPSHSEALAN 196
Score = 35.8 bits (81), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 422 LYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFS 473
L+Q +A P P +L Y +FL D A+ Y+ +A+ V P +E+ +
Sbjct: 144 LFQHAMALSPRHPEILTKYGEFLEHSQQDIVTADHYYYQALTVNPSHSEALA 195
>sp|Q17A75|FICD_AEDAE Adenosine monophosphate-protein transferase FICD homolog OS=Aedes
aegypti GN=AAEL005383 PE=3 SV=1
Length = 499
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 452 DRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAAN 509
D+A F+ A+A+ P E +KY FL + D+ A+ + +A++ +P++S AN
Sbjct: 143 DKAARLFQHALALSPKHPEILTKYGEFLEHNQQDVVRADHYYYQALTVNPSHSEALAN 200
Score = 39.7 bits (91), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 394 HETMER-FVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYD 452
H+T E+ +S + IE + L+Q LA P P +L Y +FL D
Sbjct: 119 HDTNEQEALSSLKVAIEMKTMGKDDKAARLFQHALALSPKHPEILTKYGEFLEHNQQDVV 178
Query: 453 RAEEYFKRAIAVEPPDAESFS 473
RA+ Y+ +A+ V P +E+ +
Sbjct: 179 RADHYYYQALTVNPSHSEALA 199
>sp|P33746|SOLR_CLOAB Sol locus transcriptional repressor OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=solR PE=4 SV=1
Length = 318
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 450 DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTN 503
DY ++EEY K+A+ E P+ S Y S+L R ND+ A+E L+AI + N
Sbjct: 181 DYKKSEEYLKKALDAE-PEKPSTHIYFSYLKRKTNDIKLAKEYALKAIELNKNN 233
>sp|P17885|BIMA_EMENI Protein bimA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=bimA PE=2 SV=1
Length = 806
Score = 36.6 bits (83), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 434 PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDL 486
P +LA + Y A Y AE+YF R A+ P E Y++ LW ++ND+
Sbjct: 513 PWVLAQIGRAYYEQAM-YTEAEKYFVRVKAMAPSRLEDMEIYSTVLWHLKNDV 564
>sp|Q4PB37|CLF1_USTMA Pre-mRNA-splicing factor CLF1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=CLF1 PE=3 SV=1
Length = 781
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 418 RTELLYQTGLAQEPNDP---------LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD 468
R +Y+ +AQ P+ L YA F I DYDR E +K AIA+ P
Sbjct: 361 RVREVYERAIAQVPSSQEKRDWRRYIFLWLRYALFEEIDTRDYDRTREIYKAAIALVPHR 420
Query: 469 AESFSK----YASFLWRVRNDLWAAEETFLEAISADP 501
+F+K YA F R R +L AA + AI P
Sbjct: 421 RFTFAKLWVQYARFEVR-RLELTAARKILGAAIGMAP 456
>sp|A7SVT1|FICD_NEMVE Adenosine monophosphate-protein transferase FICD homolog
OS=Nematostella vectensis GN=v1g194069 PE=3 SV=1
Length = 427
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 422 LYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWR 481
L+Q ++ P+ P +L Y +FL HD +AE + RA+ P D+ + + L +
Sbjct: 99 LFQQAVSLAPHHPEILLQYGEFLE--QHDVVQAEHLYNRALTANPLDSRALANRQRALPK 156
Query: 482 VR 483
V+
Sbjct: 157 VK 158
>sp|B3MK83|FICD_DROAN Adenosine monophosphate-protein transferase FICD homolog
OS=Drosophila ananassae GN=GF14521 PE=3 SV=1
Length = 497
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 422 LYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFS 473
L+Q LA P P +L Y +FL + A++Y+ +A+++ P ++E+ +
Sbjct: 145 LFQHSLALAPRHPTVLLRYGEFLEHSQRNIVLADQYYFQALSISPSNSEALA 196
>sp|B4JBN5|FICD_DROGR Adenosine monophosphate-protein transferase FICD homolog
OS=Drosophila grimshawi GN=GH10751 PE=3 SV=1
Length = 483
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 422 LYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFS 473
L++ LA P P +L Y +FL + A++Y+ +A+++ P ++E+F+
Sbjct: 129 LFEHALALAPKHPEVLLRYGEFLEHNQRNIVLADQYYFQALSISPSNSEAFA 180
>sp|Q8C1Z7|BBS4_MOUSE Bardet-Biedl syndrome 4 protein homolog OS=Mus musculus GN=Bbs4
PE=2 SV=1
Length = 520
Score = 33.9 bits (76), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 18/127 (14%)
Query: 398 ERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEY 457
+++V+ ++ ++ +Y F ++LY GL +++ Y A +
Sbjct: 284 KKYVAAISC-LKRANYLAPFDWKILYNLGL----------------VHLTMQQYASAFHF 326
Query: 458 FKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNT 517
AI +P E + A L + D+ A ++EA+ D N NYA L+N
Sbjct: 327 LSAAINFQPKMGELYMLLAVALTNLE-DIENARRAYVEAVRLDKCNPLVNLNYAVLLYNQ 385
Query: 518 GGEDTCF 524
G + +
Sbjct: 386 GEKKSAL 392
>sp|Q74ZC0|YSH1_ASHGO Endoribonuclease YSH1 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=YSH1 PE=3 SV=2
Length = 771
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 10 LQWTQRIIPQSPSSS--QALASAISSPSSKRRSRSSCSSDIGP 50
L+WTQ +I + + S L S SSP+S +RS SC+S+ P
Sbjct: 642 LEWTQNVISDAVADSIVAILLSVDSSPASVKRSSHSCNSNDHP 684
>sp|Q3A2F8|RSMH_PELCD Ribosomal RNA small subunit methyltransferase H OS=Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rsmH PE=3
SV=1
Length = 314
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 286 RHKFDSSSIKPFSVFSSRSGKTTSI--GGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIV 343
R F SS+ P V + + G GGGG R I T DG + +D R +
Sbjct: 3 REVFQHSSVMPEEVLECLRPQPGEVFVDGTVGGGGHARLILEATAPDGLLVGLDRDREAL 62
Query: 344 PDGASQLSSFG 354
+ QL+SFG
Sbjct: 63 EEAGRQLASFG 73
>sp|O78458|YCF37_GUITH Uncharacterized protein ycf37 OS=Guillardia theta GN=ycf37 PE=3
SV=1
Length = 178
Score = 32.7 bits (73), Expect = 8.3, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 420 ELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFL 479
EL +TGLA L N F Y YD A Y+++A+ EP + K F+
Sbjct: 83 ELDDKTGLAN-------LYNTIGFTYTQIAQYDLALFYYEKALLHEPNYLVTL-KNIGFI 134
Query: 480 WRVRNDLWAAEETFLEAISADPTNSYYAANYANFL 514
+ N+L A++ +L+ + D N +A + N L
Sbjct: 135 YEKTNNLVKAKDIYLQILKYDVDNK-FATDKLNLL 168
>sp|Q6G526|DNAA_BARHE Chromosomal replication initiator protein DnaA OS=Bartonella
henselae (strain ATCC 49882 / Houston 1) GN=dnaA PE=3
SV=2
Length = 494
Score = 32.7 bits (73), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 358 DAESVSGQVDREEELNLWNSIVDEASQMQVTD-------ESLDHETMERFVSPVTANIEA 410
D + + G+ + E +L N ++D A Q+ V ESLD R V IEA
Sbjct: 256 DMQFLQGKSIQNEFCHLLNMLLDSAKQVVVAADRPPSELESLDLRVRSRLQGGVALEIEA 315
Query: 411 DDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI 446
DY R E+L Q + +D +++ + YI
Sbjct: 316 PDYE--MRLEMLRQRLKVAQQDDNMIVISDEVLQYI 349
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201,415,897
Number of Sequences: 539616
Number of extensions: 8455942
Number of successful extensions: 27007
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 26950
Number of HSP's gapped (non-prelim): 89
length of query: 536
length of database: 191,569,459
effective HSP length: 122
effective length of query: 414
effective length of database: 125,736,307
effective search space: 52054831098
effective search space used: 52054831098
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)