Query 009385
Match_columns 536
No_of_seqs 249 out of 1526
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 12:28:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15359 type III secretion sy 99.5 1.5E-13 3.3E-18 125.1 13.4 103 414-518 38-140 (144)
2 PRK10370 formate-dependent nit 99.5 7E-13 1.5E-17 127.3 13.8 109 413-522 52-162 (198)
3 PRK15359 type III secretion sy 99.4 1.3E-12 2.9E-17 118.9 10.8 100 419-523 12-111 (144)
4 KOG0553 TPR repeat-containing 99.4 2.3E-12 4.9E-17 131.6 11.9 106 414-521 95-200 (304)
5 KOG4626 O-linked N-acetylgluco 99.3 1.5E-12 3.2E-17 142.5 8.2 107 414-522 300-406 (966)
6 TIGR02552 LcrH_SycD type III s 99.3 1E-11 2.2E-16 108.3 11.1 90 414-505 31-120 (135)
7 PRK12370 invasion protein regu 99.3 1.2E-11 2.7E-16 134.6 13.6 108 414-523 318-425 (553)
8 PLN03088 SGT1, suppressor of 99.3 3E-11 6.5E-16 125.5 15.0 102 414-517 16-117 (356)
9 KOG4626 O-linked N-acetylgluco 99.3 1E-11 2.3E-16 136.1 11.8 109 412-522 332-440 (966)
10 TIGR00990 3a0801s09 mitochondr 99.3 2.7E-11 5.7E-16 132.7 14.0 111 413-525 378-488 (615)
11 COG3063 PilF Tfp pilus assembl 99.3 1.7E-11 3.7E-16 121.9 11.2 103 414-519 49-154 (250)
12 TIGR00990 3a0801s09 mitochondr 99.3 4.1E-11 8.8E-16 131.2 14.2 110 414-525 345-454 (615)
13 PRK11189 lipoprotein NlpI; Pro 99.3 5.4E-11 1.2E-15 119.9 13.8 91 413-505 77-167 (296)
14 PRK12370 invasion protein regu 99.3 2.4E-11 5.2E-16 132.3 12.2 109 414-523 275-391 (553)
15 KOG1126 DNA-binding cell divis 99.2 1.5E-11 3.3E-16 135.2 8.6 111 414-526 469-579 (638)
16 PRK09782 bacteriophage N4 rece 99.2 7.5E-11 1.6E-15 137.2 14.1 105 414-521 590-694 (987)
17 TIGR02521 type_IV_pilW type IV 99.2 2.3E-10 5E-15 103.3 13.8 110 413-524 78-189 (234)
18 TIGR02552 LcrH_SycD type III s 99.2 1.5E-10 3.3E-15 100.9 12.1 101 421-523 4-104 (135)
19 TIGR02521 type_IV_pilW type IV 99.2 2.4E-10 5.2E-15 103.2 13.7 111 413-525 112-224 (234)
20 COG3063 PilF Tfp pilus assembl 99.2 1.5E-10 3.3E-15 115.2 11.7 106 414-521 83-190 (250)
21 PRK15179 Vi polysaccharide bio 99.2 2.1E-10 4.5E-15 129.3 13.5 109 413-523 99-207 (694)
22 PF13429 TPR_15: Tetratricopep 99.2 7.8E-11 1.7E-15 116.1 8.9 113 413-527 159-271 (280)
23 PRK10370 formate-dependent nit 99.2 3.4E-10 7.3E-15 108.8 12.4 91 414-505 87-179 (198)
24 PRK15174 Vi polysaccharide exp 99.2 2.9E-10 6.2E-15 126.7 13.6 107 414-522 226-336 (656)
25 PF13414 TPR_11: TPR repeat; P 99.1 2.2E-10 4.7E-15 90.2 8.5 68 432-501 1-69 (69)
26 PRK11189 lipoprotein NlpI; Pro 99.1 5E-10 1.1E-14 113.0 12.8 109 414-524 40-152 (296)
27 TIGR02917 PEP_TPR_lipo putativ 99.1 9.4E-10 2E-14 118.4 13.8 107 414-523 784-890 (899)
28 KOG1126 DNA-binding cell divis 99.1 7.7E-11 1.7E-15 129.7 5.4 110 414-525 435-544 (638)
29 PRK11447 cellulose synthase su 99.1 1.5E-09 3.2E-14 127.8 14.8 110 413-523 364-514 (1157)
30 PRK09782 bacteriophage N4 rece 99.1 8.4E-10 1.8E-14 128.6 12.1 106 412-519 621-726 (987)
31 cd00189 TPR Tetratricopeptide 99.0 2.8E-09 6E-14 80.8 10.9 87 414-502 14-100 (100)
32 PRK15174 Vi polysaccharide exp 99.0 2E-09 4.2E-14 120.2 13.6 109 414-524 260-372 (656)
33 PRK15363 pathogenicity island 99.0 4E-09 8.6E-14 99.7 13.3 110 391-505 28-138 (157)
34 COG5010 TadD Flp pilus assembl 99.0 2.5E-09 5.5E-14 107.6 12.6 116 413-530 113-228 (257)
35 PRK15363 pathogenicity island 99.0 1.7E-09 3.7E-14 102.2 10.5 95 425-521 25-120 (157)
36 TIGR02795 tol_pal_ybgF tol-pal 99.0 7.8E-09 1.7E-13 86.7 12.9 92 414-507 16-113 (119)
37 PF13432 TPR_16: Tetratricopep 99.0 1.5E-09 3.2E-14 84.8 7.3 64 439-504 2-65 (65)
38 TIGR02917 PEP_TPR_lipo putativ 99.0 5.4E-09 1.2E-13 112.6 14.1 107 414-522 139-245 (899)
39 PRK11447 cellulose synthase su 98.9 5.8E-09 1.3E-13 122.8 14.0 106 414-521 283-402 (1157)
40 CHL00033 ycf3 photosystem I as 98.9 1.7E-08 3.7E-13 92.9 14.1 104 414-521 49-168 (168)
41 PRK10049 pgaA outer membrane p 98.9 8.7E-09 1.9E-13 116.7 14.3 109 413-524 62-170 (765)
42 TIGR03302 OM_YfiO outer membra 98.9 1.9E-08 4.1E-13 96.1 12.6 109 414-523 47-185 (235)
43 PRK02603 photosystem I assembl 98.9 3.2E-08 6.9E-13 91.8 13.4 101 414-519 49-166 (172)
44 cd00189 TPR Tetratricopeptide 98.9 1.6E-08 3.5E-13 76.6 9.3 86 436-523 2-87 (100)
45 KOG1155 Anaphase-promoting com 98.9 1.2E-08 2.7E-13 109.6 11.6 107 414-522 378-484 (559)
46 KOG1125 TPR repeat-containing 98.9 2.4E-09 5.1E-14 116.9 6.2 110 414-525 408-519 (579)
47 PRK11788 tetratricopeptide rep 98.9 2E-08 4.4E-13 101.7 12.6 112 412-525 153-270 (389)
48 PRK11788 tetratricopeptide rep 98.9 2.6E-08 5.6E-13 100.9 13.0 105 414-521 194-299 (389)
49 KOG0548 Molecular co-chaperone 98.8 2.8E-08 6.1E-13 108.0 12.6 103 412-516 370-472 (539)
50 TIGR03302 OM_YfiO outer membra 98.8 3.1E-08 6.8E-13 94.5 11.6 111 414-525 84-224 (235)
51 COG4235 Cytochrome c biogenesi 98.8 4.5E-08 9.8E-13 100.3 13.3 107 414-521 136-244 (287)
52 KOG0547 Translocase of outer m 98.8 1.2E-08 2.6E-13 110.2 8.2 110 412-523 372-481 (606)
53 PF13429 TPR_15: Tetratricopep 98.8 1.2E-08 2.7E-13 100.5 7.7 112 412-525 122-235 (280)
54 PF12895 Apc3: Anaphase-promot 98.8 1.5E-08 3.3E-13 83.4 6.7 81 413-496 2-84 (84)
55 CHL00033 ycf3 photosystem I as 98.8 5.1E-08 1.1E-12 89.8 10.6 103 414-518 13-120 (168)
56 PRK10049 pgaA outer membrane p 98.8 7.2E-08 1.6E-12 109.3 14.0 107 414-523 29-135 (765)
57 PLN02789 farnesyltranstransfer 98.8 5.7E-08 1.2E-12 100.6 12.0 103 415-519 87-191 (320)
58 PRK15179 Vi polysaccharide bio 98.8 5.8E-08 1.3E-12 109.8 12.8 108 416-525 68-175 (694)
59 COG5010 TadD Flp pilus assembl 98.7 4.7E-08 1E-12 98.7 10.5 109 414-524 80-188 (257)
60 KOG1125 TPR repeat-containing 98.7 3.2E-08 6.9E-13 108.3 9.1 106 414-521 444-559 (579)
61 PLN03088 SGT1, suppressor of 98.7 6.2E-08 1.4E-12 101.0 10.7 85 437-523 5-89 (356)
62 PLN02789 farnesyltranstransfer 98.7 1.7E-07 3.7E-12 97.0 13.8 107 414-522 51-160 (320)
63 TIGR02795 tol_pal_ybgF tol-pal 98.7 2E-07 4.2E-12 78.2 11.1 89 434-524 2-96 (119)
64 PRK11906 transcriptional regul 98.7 1.5E-07 3.3E-12 101.5 12.4 107 414-521 272-389 (458)
65 KOG1155 Anaphase-promoting com 98.7 1.1E-07 2.4E-12 102.4 11.2 111 414-526 344-457 (559)
66 PF06552 TOM20_plant: Plant sp 98.7 1.9E-07 4.2E-12 90.3 11.7 98 415-512 6-122 (186)
67 PF13432 TPR_16: Tetratricopep 98.6 5.8E-08 1.3E-12 75.8 6.0 55 414-469 11-65 (65)
68 KOG0547 Translocase of outer m 98.6 7.9E-08 1.7E-12 104.1 8.8 108 414-523 340-447 (606)
69 PRK02603 photosystem I assembl 98.6 2.6E-07 5.6E-12 85.7 10.7 88 431-520 32-122 (172)
70 PRK10803 tol-pal system protei 98.6 5.2E-07 1.1E-11 91.2 13.2 91 414-506 157-253 (263)
71 cd05804 StaR_like StaR_like; a 98.6 2.4E-07 5.2E-12 93.0 10.7 98 428-527 108-209 (355)
72 PF14559 TPR_19: Tetratricopep 98.6 1.6E-07 3.4E-12 73.5 6.8 63 448-511 4-66 (68)
73 PF13414 TPR_11: TPR repeat; P 98.6 1.1E-07 2.4E-12 74.7 6.0 52 414-466 17-69 (69)
74 cd05804 StaR_like StaR_like; a 98.6 2.8E-07 6E-12 92.5 10.2 88 413-502 127-218 (355)
75 PF14559 TPR_19: Tetratricopep 98.6 1.5E-07 3.2E-12 73.7 6.4 63 414-477 5-67 (68)
76 COG4783 Putative Zn-dependent 98.6 6.2E-07 1.3E-11 97.0 12.9 108 412-521 318-425 (484)
77 PF13371 TPR_9: Tetratricopept 98.6 4.5E-07 9.8E-12 71.9 8.9 67 442-510 3-69 (73)
78 PRK10153 DNA-binding transcrip 98.5 4.9E-07 1.1E-11 99.2 12.1 118 412-531 354-487 (517)
79 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 2.9E-07 6.2E-12 99.3 9.8 69 429-499 70-141 (453)
80 KOG2076 RNA polymerase III tra 98.5 1.1E-06 2.5E-11 100.0 14.0 106 413-520 152-257 (895)
81 TIGR00540 hemY_coli hemY prote 98.5 6.5E-07 1.4E-11 94.1 11.4 107 412-523 275-389 (409)
82 PRK14574 hmsH outer membrane p 98.5 7.1E-07 1.5E-11 102.8 12.4 105 414-520 48-152 (822)
83 KOG0548 Molecular co-chaperone 98.5 6E-07 1.3E-11 97.9 10.6 99 414-514 16-114 (539)
84 KOG1173 Anaphase-promoting com 98.5 6.1E-07 1.3E-11 98.4 10.1 102 413-516 427-535 (611)
85 PRK11906 transcriptional regul 98.4 1.1E-06 2.5E-11 94.9 11.1 92 413-506 317-408 (458)
86 COG4235 Cytochrome c biogenesi 98.4 2.3E-06 5E-11 87.9 11.9 92 414-506 170-263 (287)
87 PF13371 TPR_9: Tetratricopept 98.4 1.5E-06 3.3E-11 68.8 8.3 62 414-476 9-70 (73)
88 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 3.5E-06 7.6E-11 90.0 13.0 105 414-523 183-287 (395)
89 PRK10153 DNA-binding transcrip 98.4 3.8E-06 8.2E-11 92.4 13.5 90 414-506 398-489 (517)
90 PRK14574 hmsH outer membrane p 98.4 3.5E-06 7.6E-11 97.2 13.5 106 413-521 115-220 (822)
91 KOG1173 Anaphase-promoting com 98.4 3.1E-06 6.6E-11 93.1 12.2 65 414-479 469-533 (611)
92 TIGR00540 hemY_coli hemY prote 98.4 3.9E-06 8.4E-11 88.4 12.5 107 414-522 98-205 (409)
93 KOG0543 FKBP-type peptidyl-pro 98.3 4.2E-06 9.2E-11 89.0 12.7 98 414-513 222-334 (397)
94 KOG2003 TPR repeat-containing 98.3 3E-06 6.5E-11 91.6 10.5 108 414-523 504-611 (840)
95 KOG3060 Uncharacterized conser 98.3 1.1E-05 2.3E-10 82.2 13.6 127 370-511 104-232 (289)
96 KOG1129 TPR repeat-containing 98.3 2.1E-06 4.6E-11 89.9 8.7 108 414-523 338-448 (478)
97 PRK10747 putative protoheme IX 98.3 5.2E-06 1.1E-10 87.3 11.7 104 413-522 276-379 (398)
98 PF12895 Apc3: Anaphase-promot 98.2 9.9E-07 2.2E-11 72.6 4.1 76 448-525 2-79 (84)
99 KOG4162 Predicted calmodulin-b 98.2 4.3E-06 9.3E-11 94.3 10.3 104 414-519 664-769 (799)
100 PF09976 TPR_21: Tetratricopep 98.2 1.7E-05 3.7E-10 71.8 12.4 108 414-524 25-138 (145)
101 PRK15331 chaperone protein Sic 98.2 1.4E-05 3.1E-10 76.4 11.3 113 390-508 30-142 (165)
102 KOG4162 Predicted calmodulin-b 98.2 9.1E-06 2E-10 91.8 11.5 92 412-505 696-789 (799)
103 PF12688 TPR_5: Tetratrico pep 98.2 1.3E-05 2.9E-10 72.6 10.3 86 411-498 12-103 (120)
104 KOG3060 Uncharacterized conser 98.2 1.7E-05 3.8E-10 80.7 12.2 106 414-521 100-205 (289)
105 PRK10747 putative protoheme IX 98.2 1.8E-05 3.9E-10 83.3 12.8 90 414-505 132-222 (398)
106 KOG4648 Uncharacterized conser 98.2 5.6E-06 1.2E-10 87.3 8.5 98 414-513 111-208 (536)
107 KOG1840 Kinesin light chain [C 98.2 5.1E-06 1.1E-10 91.3 8.6 112 414-527 255-390 (508)
108 KOG1128 Uncharacterized conser 98.1 4.2E-06 9.2E-11 94.0 7.8 109 414-524 499-607 (777)
109 PRK10803 tol-pal system protei 98.1 2E-05 4.4E-10 79.8 11.9 92 433-525 141-238 (263)
110 KOG2002 TPR-containing nuclear 98.1 7.1E-06 1.5E-10 94.4 9.4 129 391-521 227-359 (1018)
111 PF13424 TPR_12: Tetratricopep 98.1 3.1E-06 6.7E-11 68.2 4.7 66 432-499 3-75 (78)
112 KOG0553 TPR repeat-containing 98.1 1.1E-05 2.3E-10 83.4 9.1 84 437-522 84-167 (304)
113 PF12688 TPR_5: Tetratrico pep 98.1 5.2E-05 1.1E-09 68.8 12.0 89 434-524 1-95 (120)
114 KOG1156 N-terminal acetyltrans 98.1 1.1E-05 2.5E-10 89.7 9.2 157 368-529 4-168 (700)
115 PRK15331 chaperone protein Sic 98.1 1.1E-05 2.4E-10 77.2 7.9 93 427-521 30-122 (165)
116 KOG0550 Molecular chaperone (D 98.0 8.1E-06 1.7E-10 87.4 7.1 109 412-522 181-305 (486)
117 KOG1129 TPR repeat-containing 98.0 1.5E-05 3.3E-10 83.7 8.8 106 414-521 270-375 (478)
118 PRK14720 transcript cleavage f 98.0 2.2E-05 4.7E-10 91.2 10.4 105 414-523 45-168 (906)
119 PF09976 TPR_21: Tetratricopep 98.0 4E-05 8.7E-10 69.4 9.5 83 412-497 60-145 (145)
120 COG4783 Putative Zn-dependent 98.0 7.3E-05 1.6E-09 81.3 12.7 95 427-523 299-393 (484)
121 KOG1840 Kinesin light chain [C 98.0 3E-05 6.4E-10 85.4 9.6 113 413-527 338-473 (508)
122 KOG2002 TPR-containing nuclear 98.0 4.5E-05 9.7E-10 88.1 11.2 100 414-514 321-424 (1018)
123 PRK10866 outer membrane biogen 97.9 0.00018 4E-09 71.8 13.8 107 414-521 46-192 (243)
124 KOG1174 Anaphase-promoting com 97.9 0.00012 2.6E-09 78.9 12.6 98 411-511 415-512 (564)
125 COG1729 Uncharacterized protei 97.9 0.00013 2.8E-09 74.5 12.2 92 414-507 155-252 (262)
126 PF13428 TPR_14: Tetratricopep 97.9 2.8E-05 6E-10 57.7 5.3 42 435-477 2-43 (44)
127 KOG1156 N-terminal acetyltrans 97.9 5.5E-05 1.2E-09 84.5 9.7 106 414-521 21-126 (700)
128 COG2956 Predicted N-acetylgluc 97.9 9.2E-05 2E-09 77.7 10.7 123 392-522 139-267 (389)
129 COG4700 Uncharacterized protei 97.8 0.0003 6.6E-09 69.6 12.8 141 363-521 67-210 (251)
130 KOG0624 dsRNA-activated protei 97.8 7.1E-05 1.5E-09 79.2 8.7 90 414-505 52-141 (504)
131 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 4E-05 8.8E-10 83.1 6.5 58 464-522 70-130 (453)
132 KOG1128 Uncharacterized conser 97.8 4E-05 8.7E-10 86.4 6.6 73 448-521 498-570 (777)
133 PF13431 TPR_17: Tetratricopep 97.8 2.5E-05 5.4E-10 55.8 3.3 32 458-490 2-33 (34)
134 KOG0550 Molecular chaperone (D 97.7 0.0001 2.2E-09 79.3 8.9 99 414-515 263-365 (486)
135 KOG1127 TPR repeat-containing 97.7 0.00016 3.4E-09 84.1 10.7 111 414-525 472-617 (1238)
136 PF13431 TPR_17: Tetratricopep 97.7 3.2E-05 6.9E-10 55.3 3.3 33 422-455 1-33 (34)
137 KOG4555 TPR repeat-containing 97.7 0.00029 6.3E-09 66.4 10.5 89 414-504 57-149 (175)
138 KOG0543 FKBP-type peptidyl-pro 97.7 0.00018 3.8E-09 77.0 10.2 87 414-501 271-357 (397)
139 PRK14720 transcript cleavage f 97.7 0.00016 3.6E-09 84.2 10.5 81 415-499 98-178 (906)
140 KOG4234 TPR repeat-containing 97.7 0.0004 8.6E-09 69.4 11.3 94 414-509 109-207 (271)
141 PF13525 YfiO: Outer membrane 97.7 0.00035 7.6E-09 67.3 10.7 92 414-506 19-126 (203)
142 KOG2076 RNA polymerase III tra 97.6 0.00044 9.5E-09 79.6 12.7 109 412-522 185-298 (895)
143 KOG4642 Chaperone-dependent E3 97.6 0.00016 3.5E-09 73.4 8.1 84 414-499 24-107 (284)
144 KOG2003 TPR repeat-containing 97.6 0.00025 5.3E-09 77.2 10.0 112 414-527 572-683 (840)
145 KOG0376 Serine-threonine phosp 97.6 7.7E-05 1.7E-09 81.1 5.9 110 414-525 18-129 (476)
146 PF13428 TPR_14: Tetratricopep 97.6 0.00012 2.5E-09 54.3 5.1 43 469-512 1-43 (44)
147 KOG0624 dsRNA-activated protei 97.6 0.00089 1.9E-08 71.1 13.2 113 414-528 120-254 (504)
148 PF04733 Coatomer_E: Coatomer 97.6 0.00014 3.1E-09 74.5 7.2 92 414-506 181-272 (290)
149 COG0457 NrfG FOG: TPR repeat [ 97.6 0.0019 4.1E-08 54.3 12.6 103 414-518 144-250 (291)
150 PF13512 TPR_18: Tetratricopep 97.5 0.0012 2.6E-08 62.0 12.0 92 414-507 24-136 (142)
151 PF05843 Suf: Suppressor of fo 97.5 0.00034 7.3E-09 70.9 8.9 105 415-520 16-123 (280)
152 KOG1174 Anaphase-promoting com 97.5 0.00035 7.6E-09 75.4 9.2 108 414-522 246-386 (564)
153 COG4785 NlpI Lipoprotein NlpI, 97.5 0.00033 7.2E-09 70.6 8.5 128 368-505 41-168 (297)
154 PF04733 Coatomer_E: Coatomer 97.5 0.00044 9.6E-09 70.9 8.8 105 414-520 145-251 (290)
155 PF07719 TPR_2: Tetratricopept 97.4 0.00031 6.8E-09 48.0 5.2 33 435-468 2-34 (34)
156 COG2956 Predicted N-acetylgluc 97.4 0.0016 3.5E-08 68.6 12.7 93 414-508 194-287 (389)
157 PRK10866 outer membrane biogen 97.4 0.001 2.3E-08 66.4 10.9 85 432-518 30-120 (243)
158 PF00515 TPR_1: Tetratricopept 97.4 0.00026 5.7E-09 48.9 4.5 32 435-467 2-33 (34)
159 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.0012 2.5E-08 71.0 11.2 80 414-495 214-293 (395)
160 PLN03077 Protein ECB2; Provisi 97.4 0.0017 3.7E-08 74.5 13.1 107 412-522 601-709 (857)
161 KOG1127 TPR repeat-containing 97.4 0.00062 1.3E-08 79.3 9.4 91 414-504 16-108 (1238)
162 COG0457 NrfG FOG: TPR repeat [ 97.3 0.0069 1.5E-07 51.0 12.9 88 413-502 180-268 (291)
163 PF06552 TOM20_plant: Plant sp 97.3 0.00078 1.7E-08 65.7 8.1 69 451-519 7-84 (186)
164 KOG0545 Aryl-hydrocarbon recep 97.3 0.0017 3.6E-08 66.6 10.5 91 414-506 192-300 (329)
165 PF07719 TPR_2: Tetratricopept 97.3 0.00055 1.2E-08 46.8 5.0 34 469-503 1-34 (34)
166 KOG2396 HAT (Half-A-TPR) repea 97.3 0.0026 5.7E-08 70.0 12.2 94 415-509 86-179 (568)
167 PF00515 TPR_1: Tetratricopept 97.2 0.00054 1.2E-08 47.4 4.3 34 469-503 1-34 (34)
168 KOG3824 Huntingtin interacting 97.2 0.00085 1.8E-08 70.5 7.6 64 413-477 129-192 (472)
169 COG1729 Uncharacterized protei 97.2 0.002 4.3E-08 66.0 9.9 84 437-522 144-233 (262)
170 PF12569 NARP1: NMDA receptor- 97.2 0.002 4.3E-08 71.4 10.5 82 438-521 198-279 (517)
171 PLN03081 pentatricopeptide (PP 97.1 0.0042 9.1E-08 69.8 12.6 108 413-524 439-548 (697)
172 KOG0495 HAT repeat protein [RN 97.1 0.0025 5.5E-08 72.0 10.5 104 414-519 665-768 (913)
173 PF13424 TPR_12: Tetratricopep 97.1 0.00063 1.4E-08 54.7 4.2 50 414-464 19-75 (78)
174 KOG0495 HAT repeat protein [RN 97.1 0.0054 1.2E-07 69.5 12.7 113 414-528 733-885 (913)
175 PF13525 YfiO: Outer membrane 97.0 0.0063 1.4E-07 58.6 10.7 83 433-517 4-92 (203)
176 PF12569 NARP1: NMDA receptor- 97.0 0.0047 1E-07 68.5 11.0 111 412-524 206-325 (517)
177 PF05843 Suf: Suppressor of fo 97.0 0.0024 5.2E-08 64.8 8.1 86 435-521 2-87 (280)
178 COG3071 HemY Uncharacterized e 97.0 0.01 2.2E-07 63.7 12.8 81 414-497 308-388 (400)
179 KOG4555 TPR repeat-containing 96.9 0.0049 1.1E-07 58.3 8.8 82 441-524 50-135 (175)
180 KOG3824 Huntingtin interacting 96.9 0.00087 1.9E-08 70.4 4.2 66 447-513 128-193 (472)
181 PRK04841 transcriptional regul 96.8 0.011 2.5E-07 67.4 12.5 109 413-523 465-592 (903)
182 PF04184 ST7: ST7 protein; In 96.8 0.0085 1.8E-07 66.1 10.8 103 414-520 182-311 (539)
183 COG3071 HemY Uncharacterized e 96.8 0.012 2.7E-07 63.1 11.5 104 412-521 275-378 (400)
184 PF13512 TPR_18: Tetratricopep 96.7 0.011 2.4E-07 55.7 9.8 83 434-518 10-98 (142)
185 PF03704 BTAD: Bacterial trans 96.7 0.057 1.2E-06 48.5 14.0 62 435-498 63-124 (146)
186 COG4785 NlpI Lipoprotein NlpI, 96.6 0.003 6.6E-08 63.9 5.5 74 447-521 77-150 (297)
187 PLN03218 maturation of RBCL 1; 96.6 0.043 9.3E-07 65.8 15.8 108 414-524 593-704 (1060)
188 KOG4648 Uncharacterized conser 96.6 0.004 8.6E-08 66.4 6.4 93 437-531 100-199 (536)
189 PF13181 TPR_8: Tetratricopept 96.6 0.0041 8.9E-08 42.7 4.3 30 436-466 3-32 (34)
190 PF14938 SNAP: Soluble NSF att 96.5 0.0061 1.3E-07 61.5 7.2 88 415-504 89-189 (282)
191 PRK04841 transcriptional regul 96.5 0.021 4.6E-07 65.2 11.9 109 413-523 504-631 (903)
192 PLN03218 maturation of RBCL 1; 96.5 0.064 1.4E-06 64.3 16.1 110 413-526 627-741 (1060)
193 KOG2796 Uncharacterized conser 96.5 0.011 2.4E-07 61.3 8.5 105 414-520 191-302 (366)
194 PLN03081 pentatricopeptide (PP 96.4 0.022 4.8E-07 64.1 11.4 105 414-525 374-483 (697)
195 PF13181 TPR_8: Tetratricopept 96.4 0.0059 1.3E-07 41.9 4.2 34 469-503 1-34 (34)
196 PF14938 SNAP: Soluble NSF att 96.3 0.0063 1.4E-07 61.4 5.9 109 414-524 49-175 (282)
197 PF10300 DUF3808: Protein of u 96.3 0.029 6.4E-07 61.3 11.2 106 413-520 246-356 (468)
198 KOG4507 Uncharacterized conser 96.2 0.02 4.2E-07 64.5 9.4 98 414-513 621-719 (886)
199 KOG2610 Uncharacterized conser 96.2 0.026 5.7E-07 60.2 9.8 105 414-520 117-225 (491)
200 COG0790 FOG: TPR repeat, SEL1 96.2 0.086 1.9E-06 52.5 13.1 98 414-518 127-236 (292)
201 KOG0551 Hsp90 co-chaperone CNS 96.2 0.027 5.9E-07 59.8 9.8 88 414-503 95-186 (390)
202 COG5191 Uncharacterized conser 96.2 0.0064 1.4E-07 64.1 5.0 92 419-511 92-183 (435)
203 KOG2376 Signal recognition par 96.1 0.014 3.1E-07 65.3 7.7 103 414-525 26-131 (652)
204 KOG4340 Uncharacterized conser 96.1 0.032 6.9E-07 58.9 9.5 111 414-526 58-200 (459)
205 KOG2053 Mitochondrial inherita 96.1 0.036 7.8E-07 64.5 10.7 118 395-518 7-124 (932)
206 KOG3081 Vesicle coat complex C 96.0 0.071 1.5E-06 55.3 11.3 92 414-506 187-278 (299)
207 COG3118 Thioredoxin domain-con 96.0 0.037 8E-07 57.8 9.3 107 414-524 148-256 (304)
208 KOG1308 Hsp70-interacting prot 95.9 0.0029 6.4E-08 67.0 1.0 88 413-502 127-214 (377)
209 KOG4642 Chaperone-dependent E3 95.8 0.011 2.5E-07 60.3 5.0 81 441-523 17-97 (284)
210 KOG1070 rRNA processing protei 95.8 0.1 2.2E-06 63.5 13.3 105 414-520 1544-1650(1710)
211 smart00028 TPR Tetratricopepti 95.6 0.02 4.4E-07 35.6 3.8 31 436-467 3-33 (34)
212 KOG1310 WD40 repeat protein [G 95.5 0.054 1.2E-06 60.5 8.9 90 414-504 388-479 (758)
213 PF13281 DUF4071: Domain of un 95.5 0.13 2.8E-06 55.3 11.6 107 412-520 153-275 (374)
214 PF13176 TPR_7: Tetratricopept 95.3 0.03 6.4E-07 40.0 4.2 25 437-462 2-26 (36)
215 KOG1941 Acetylcholine receptor 95.3 0.028 6E-07 60.5 5.5 114 414-529 136-271 (518)
216 KOG1130 Predicted G-alpha GTPa 95.2 0.029 6.2E-07 61.2 5.5 109 414-524 209-335 (639)
217 KOG1130 Predicted G-alpha GTPa 95.2 0.029 6.3E-07 61.2 5.5 106 413-520 30-151 (639)
218 smart00028 TPR Tetratricopepti 95.2 0.037 8E-07 34.4 3.9 33 470-503 2-34 (34)
219 PF13174 TPR_6: Tetratricopept 95.1 0.043 9.2E-07 36.9 4.4 31 436-467 2-32 (33)
220 PF08424 NRDE-2: NRDE-2, neces 95.1 0.37 8.1E-06 50.1 13.2 94 421-515 6-110 (321)
221 PF14561 TPR_20: Tetratricopep 95.0 0.28 6.2E-06 42.4 10.1 49 419-468 7-55 (90)
222 PLN03077 Protein ECB2; Provisi 95.0 0.14 3.1E-06 59.1 10.8 102 414-523 538-644 (857)
223 KOG1915 Cell cycle control pro 94.9 0.17 3.7E-06 56.2 10.5 107 414-523 380-490 (677)
224 KOG4234 TPR repeat-containing 94.9 0.089 1.9E-06 53.1 7.7 82 441-524 102-188 (271)
225 PF13281 DUF4071: Domain of un 94.9 0.34 7.4E-06 52.2 12.5 56 413-468 195-259 (374)
226 KOG2376 Signal recognition par 94.9 0.17 3.8E-06 57.0 10.5 105 414-523 93-243 (652)
227 COG0790 FOG: TPR repeat, SEL1 94.8 0.39 8.5E-06 47.8 12.1 99 414-516 91-199 (292)
228 COG4105 ComL DNA uptake lipopr 94.8 0.44 9.6E-06 49.0 12.4 92 413-505 47-151 (254)
229 KOG3785 Uncharacterized conser 94.8 0.069 1.5E-06 57.5 6.8 110 414-529 36-146 (557)
230 PF14853 Fis1_TPR_C: Fis1 C-te 94.7 0.13 2.7E-06 40.9 6.6 41 435-476 2-42 (53)
231 PF11207 DUF2989: Protein of u 94.7 0.72 1.6E-05 46.1 13.4 138 369-526 58-200 (203)
232 PF09613 HrpB1_HrpK: Bacterial 94.7 0.41 9E-06 46.1 11.2 118 394-518 7-124 (160)
233 PF02259 FAT: FAT domain; Int 94.7 0.44 9.6E-06 47.9 12.1 106 414-520 160-308 (352)
234 PF14561 TPR_20: Tetratricopep 94.5 0.18 3.9E-06 43.6 7.6 65 454-519 7-73 (90)
235 KOG2796 Uncharacterized conser 94.4 0.18 3.8E-06 52.7 8.6 89 414-504 226-320 (366)
236 KOG2610 Uncharacterized conser 94.4 0.15 3.2E-06 54.8 8.0 113 414-528 151-271 (491)
237 KOG1070 rRNA processing protei 94.3 0.4 8.6E-06 58.7 12.4 109 412-523 1509-1619(1710)
238 KOG1915 Cell cycle control pro 94.3 0.33 7.1E-06 54.0 10.9 99 414-515 451-551 (677)
239 COG4105 ComL DNA uptake lipopr 94.3 0.27 5.8E-06 50.5 9.6 71 434-506 34-107 (254)
240 PF13174 TPR_6: Tetratricopept 94.2 0.099 2.1E-06 35.1 4.4 33 470-503 1-33 (33)
241 PF08424 NRDE-2: NRDE-2, neces 94.1 0.64 1.4E-05 48.4 12.1 108 414-522 45-172 (321)
242 COG3914 Spy Predicted O-linked 93.9 0.54 1.2E-05 53.2 11.7 100 413-513 80-185 (620)
243 PF09613 HrpB1_HrpK: Bacterial 93.9 1.4 3E-05 42.5 13.0 73 447-520 22-94 (160)
244 COG4976 Predicted methyltransf 93.9 0.069 1.5E-06 54.6 4.3 57 413-470 8-64 (287)
245 PF09986 DUF2225: Uncharacteri 93.8 1.5 3.1E-05 43.7 13.5 100 414-516 91-212 (214)
246 COG4700 Uncharacterized protei 93.8 0.69 1.5E-05 46.5 11.1 104 415-521 71-177 (251)
247 KOG3081 Vesicle coat complex C 93.8 0.59 1.3E-05 48.8 10.9 104 414-520 151-257 (299)
248 PRK10941 hypothetical protein; 93.7 0.42 9E-06 49.2 9.7 57 414-471 195-251 (269)
249 PF10373 EST1_DNA_bind: Est1 D 93.6 0.22 4.8E-06 48.8 7.4 62 419-481 1-62 (278)
250 PF13176 TPR_7: Tetratricopept 93.6 0.11 2.4E-06 37.0 3.9 29 471-500 1-29 (36)
251 KOG1550 Extracellular protein 93.5 0.47 1E-05 53.0 10.5 92 415-512 308-404 (552)
252 PF10373 EST1_DNA_bind: Est1 D 93.3 0.25 5.4E-06 48.4 7.2 62 454-516 1-62 (278)
253 PF03704 BTAD: Bacterial trans 93.3 0.35 7.6E-06 43.4 7.5 50 413-463 75-124 (146)
254 PF14853 Fis1_TPR_C: Fis1 C-te 93.1 0.36 7.9E-06 38.3 6.5 39 470-509 2-40 (53)
255 COG4976 Predicted methyltransf 93.0 0.15 3.3E-06 52.2 5.2 75 442-521 3-77 (287)
256 KOG3785 Uncharacterized conser 93.0 0.21 4.5E-06 54.0 6.4 104 414-519 71-200 (557)
257 PF13374 TPR_10: Tetratricopep 93.0 0.22 4.8E-06 34.8 4.6 29 435-464 3-31 (42)
258 KOG3364 Membrane protein invol 92.9 0.85 1.8E-05 43.4 9.5 93 414-507 12-108 (149)
259 PRK10941 hypothetical protein; 92.7 0.35 7.6E-06 49.8 7.5 69 436-506 183-251 (269)
260 KOG0376 Serine-threonine phosp 92.7 0.047 1E-06 60.0 1.1 78 440-519 10-87 (476)
261 KOG0551 Hsp90 co-chaperone CNS 92.7 0.25 5.4E-06 52.8 6.4 83 439-523 86-172 (390)
262 KOG2471 TPR repeat-containing 92.6 0.19 4.1E-06 56.0 5.6 102 414-517 254-382 (696)
263 KOG1550 Extracellular protein 92.5 1 2.3E-05 50.3 11.4 88 414-505 342-432 (552)
264 COG3914 Spy Predicted O-linked 91.9 0.64 1.4E-05 52.6 8.7 105 415-520 46-158 (620)
265 KOG4340 Uncharacterized conser 91.6 0.47 1E-05 50.5 6.9 112 414-527 24-135 (459)
266 PF13374 TPR_10: Tetratricopep 91.6 0.38 8.2E-06 33.6 4.4 30 469-499 2-31 (42)
267 PF10300 DUF3808: Protein of u 91.5 1.7 3.7E-05 47.8 11.5 124 392-523 186-324 (468)
268 PF04781 DUF627: Protein of un 91.4 0.91 2E-05 41.4 7.7 85 414-499 10-107 (111)
269 KOG2047 mRNA splicing factor [ 90.8 1.8 3.9E-05 49.9 10.8 106 412-518 489-600 (835)
270 COG3898 Uncharacterized membra 90.7 3.1 6.6E-05 45.8 12.1 109 411-520 165-279 (531)
271 PF04184 ST7: ST7 protein; In 90.7 2.2 4.7E-05 47.9 11.2 93 414-507 273-383 (539)
272 KOG1586 Protein required for f 90.4 2.3 5E-05 44.0 10.2 95 414-509 87-193 (288)
273 TIGR02561 HrpB1_HrpK type III 90.2 2.9 6.2E-05 40.2 10.2 68 414-482 24-91 (153)
274 KOG0530 Protein farnesyltransf 90.1 2.3 5E-05 44.6 10.1 107 415-522 58-165 (318)
275 COG2976 Uncharacterized protei 90.1 1.8 3.9E-05 43.3 9.0 89 412-505 101-194 (207)
276 KOG1941 Acetylcholine receptor 90.0 0.73 1.6E-05 50.0 6.6 107 412-520 95-222 (518)
277 KOG2053 Mitochondrial inherita 89.9 2.6 5.6E-05 49.8 11.4 103 413-518 56-158 (932)
278 KOG0545 Aryl-hydrocarbon recep 89.9 1.6 3.5E-05 45.4 8.8 80 435-516 179-276 (329)
279 KOG1258 mRNA processing protei 89.7 3.4 7.3E-05 47.0 11.7 111 412-524 309-420 (577)
280 PF04781 DUF627: Protein of un 89.6 1.1 2.4E-05 40.9 6.6 74 441-515 3-89 (111)
281 KOG2396 HAT (Half-A-TPR) repea 89.6 1.7 3.7E-05 48.7 9.2 64 414-477 119-182 (568)
282 PF02259 FAT: FAT domain; Int 88.4 5 0.00011 40.4 11.1 68 435-503 253-342 (352)
283 KOG1308 Hsp70-interacting prot 87.9 0.092 2E-06 56.0 -1.7 72 447-519 126-197 (377)
284 KOG2471 TPR repeat-containing 87.7 0.83 1.8E-05 51.2 5.3 102 418-521 224-352 (696)
285 PF12862 Apc5: Anaphase-promot 87.4 3.2 7E-05 35.5 7.8 54 447-501 10-72 (94)
286 KOG3617 WD40 and TPR repeat-co 87.4 3 6.5E-05 49.4 9.6 84 414-499 872-996 (1416)
287 KOG2300 Uncharacterized conser 86.9 4.6 0.0001 45.4 10.4 97 414-510 23-129 (629)
288 smart00386 HAT HAT (Half-A-TPR 86.6 1.6 3.5E-05 28.6 4.4 28 450-477 2-29 (33)
289 KOG2047 mRNA splicing factor [ 86.5 3.1 6.8E-05 48.0 9.0 29 172-200 78-106 (835)
290 PF04910 Tcf25: Transcriptiona 86.3 9.1 0.0002 40.9 12.1 49 448-496 116-165 (360)
291 smart00386 HAT HAT (Half-A-TPR 86.3 1.9 4.1E-05 28.3 4.6 29 485-513 2-30 (33)
292 PF08631 SPO22: Meiosis protei 85.9 11 0.00023 38.4 11.9 93 414-507 7-124 (278)
293 KOG1585 Protein required for f 85.8 4.5 9.8E-05 42.2 9.1 106 413-521 44-167 (308)
294 KOG0529 Protein geranylgeranyl 85.3 7.3 0.00016 42.8 10.8 102 415-516 90-195 (421)
295 KOG3617 WD40 and TPR repeat-co 84.9 6.4 0.00014 46.8 10.6 62 434-497 858-939 (1416)
296 KOG1258 mRNA processing protei 84.5 14 0.0003 42.3 12.8 104 414-518 380-489 (577)
297 KOG4814 Uncharacterized conser 84.3 4.4 9.6E-05 46.8 8.9 82 441-524 361-448 (872)
298 KOG4507 Uncharacterized conser 83.1 1.9 4.2E-05 49.2 5.5 100 420-521 199-300 (886)
299 PF12968 DUF3856: Domain of Un 82.8 17 0.00038 34.3 10.7 84 414-499 23-129 (144)
300 KOG1914 mRNA cleavage and poly 82.4 14 0.0003 42.2 11.7 106 414-520 380-488 (656)
301 PF07720 TPR_3: Tetratricopept 82.3 3.9 8.4E-05 30.0 5.1 30 437-467 4-35 (36)
302 KOG4014 Uncharacterized conser 81.7 4.8 0.0001 40.5 7.1 115 389-513 29-153 (248)
303 KOG1310 WD40 repeat protein [G 81.6 2.3 5E-05 48.1 5.4 73 449-521 388-462 (758)
304 COG5191 Uncharacterized conser 81.3 1.2 2.6E-05 47.7 2.9 64 414-477 121-184 (435)
305 PF11207 DUF2989: Protein of u 81.2 6.1 0.00013 39.6 7.6 56 432-490 139-198 (203)
306 PF11846 DUF3366: Domain of un 80.7 5.6 0.00012 37.9 7.1 54 411-466 122-175 (193)
307 PF12862 Apc5: Anaphase-promot 79.7 8.2 0.00018 33.0 7.1 53 414-467 12-73 (94)
308 KOG0530 Protein farnesyltransf 79.7 12 0.00026 39.4 9.4 90 414-521 40-129 (318)
309 COG3898 Uncharacterized membra 78.8 24 0.00052 39.2 11.7 100 414-520 243-345 (531)
310 KOG3364 Membrane protein invol 77.5 5.1 0.00011 38.3 5.5 65 409-474 44-110 (149)
311 COG2912 Uncharacterized conser 76.7 10 0.00022 39.6 7.9 57 448-505 194-250 (269)
312 TIGR02561 HrpB1_HrpK type III 76.5 29 0.00063 33.5 10.3 73 447-520 22-94 (153)
313 PF07720 TPR_3: Tetratricopept 76.5 7.2 0.00016 28.6 4.9 33 470-503 2-36 (36)
314 PF08631 SPO22: Meiosis protei 76.1 13 0.00028 37.8 8.5 74 447-521 5-101 (278)
315 PF07721 TPR_4: Tetratricopept 75.7 3.3 7.1E-05 27.6 2.8 23 436-459 3-25 (26)
316 KOG1914 mRNA cleavage and poly 75.7 29 0.00062 39.8 11.5 106 415-521 346-452 (656)
317 PF00244 14-3-3: 14-3-3 protei 72.7 11 0.00023 38.0 6.9 46 417-462 143-196 (236)
318 PF07079 DUF1347: Protein of u 71.9 11 0.00025 42.1 7.2 51 443-496 471-521 (549)
319 PF00244 14-3-3: 14-3-3 protei 71.6 13 0.00028 37.5 7.1 48 451-498 142-197 (236)
320 smart00101 14_3_3 14-3-3 homol 71.4 13 0.00029 38.0 7.2 46 417-462 145-198 (244)
321 COG3629 DnrI DNA-binding trans 70.9 23 0.00049 37.2 8.9 79 416-498 137-215 (280)
322 COG2912 Uncharacterized conser 70.5 11 0.00023 39.4 6.4 83 391-476 174-256 (269)
323 KOG0128 RNA-binding protein SA 69.9 54 0.0012 39.2 12.3 104 414-519 93-198 (881)
324 PF10579 Rapsyn_N: Rapsyn N-te 69.6 24 0.00052 30.7 7.3 57 441-499 13-72 (80)
325 KOG1586 Protein required for f 69.1 84 0.0018 33.0 12.2 94 412-506 126-231 (288)
326 COG4455 ImpE Protein of avirul 69.0 16 0.00035 37.7 7.1 88 414-502 15-118 (273)
327 KOG0546 HSP90 co-chaperone CPR 68.8 4.4 9.4E-05 43.8 3.2 77 436-514 277-353 (372)
328 PF09986 DUF2225: Uncharacteri 68.1 27 0.00059 34.7 8.5 63 416-479 141-210 (214)
329 PF07721 TPR_4: Tetratricopept 68.0 6.4 0.00014 26.2 2.8 25 470-495 2-26 (26)
330 smart00101 14_3_3 14-3-3 homol 67.1 18 0.0004 37.0 7.2 48 451-498 144-199 (244)
331 PF04190 DUF410: Protein of un 66.5 46 0.001 34.0 9.9 107 390-499 45-170 (260)
332 PF11846 DUF3366: Domain of un 65.9 31 0.00066 32.9 8.1 52 451-504 127-178 (193)
333 KOG0529 Protein geranylgeranyl 65.3 21 0.00047 39.3 7.6 102 415-516 126-241 (421)
334 KOG1585 Protein required for f 65.0 44 0.00095 35.2 9.4 56 443-499 39-100 (308)
335 KOG3783 Uncharacterized conser 64.4 44 0.00095 38.1 9.9 73 430-503 444-524 (546)
336 smart00671 SEL1 Sel1-like repe 63.7 12 0.00027 25.4 3.7 30 470-499 2-34 (36)
337 KOG4814 Uncharacterized conser 63.2 45 0.00097 39.1 9.8 85 414-500 368-458 (872)
338 PF10345 Cohesin_load: Cohesin 62.4 91 0.002 35.4 12.2 86 415-502 36-131 (608)
339 PF10602 RPN7: 26S proteasome 61.1 52 0.0011 31.7 8.7 85 414-500 50-143 (177)
340 PF09655 Nitr_red_assoc: Conse 60.5 5.5 0.00012 38.0 1.9 56 106-168 59-115 (144)
341 PF04910 Tcf25: Transcriptiona 59.2 60 0.0013 34.8 9.6 32 473-505 107-139 (360)
342 KOG4014 Uncharacterized conser 59.1 45 0.00097 33.9 7.9 85 432-519 32-120 (248)
343 KOG2300 Uncharacterized conser 57.2 79 0.0017 36.1 10.2 99 414-519 381-500 (629)
344 KOG2422 Uncharacterized conser 56.8 66 0.0014 37.3 9.7 87 414-501 356-450 (665)
345 PF10602 RPN7: 26S proteasome 56.0 95 0.0021 29.9 9.5 85 434-520 36-129 (177)
346 PHA02537 M terminase endonucle 55.2 19 0.00042 36.6 4.9 91 412-503 95-211 (230)
347 PF10516 SHNi-TPR: SHNi-TPR; 54.5 21 0.00045 26.7 3.7 29 470-499 2-30 (38)
348 KOG3807 Predicted membrane pro 53.3 35 0.00076 37.3 6.6 48 415-465 199-246 (556)
349 PF04212 MIT: MIT (microtubule 52.7 36 0.00079 27.4 5.2 17 447-463 17-33 (69)
350 PF02184 HAT: HAT (Half-A-TPR) 51.0 27 0.00059 25.5 3.7 26 450-476 2-27 (32)
351 COG2976 Uncharacterized protei 50.6 1.3E+02 0.0029 30.5 9.7 101 418-522 70-177 (207)
352 KOG0890 Protein kinase of the 50.4 86 0.0019 41.4 10.2 99 413-514 1683-1799(2382)
353 PF08238 Sel1: Sel1 repeat; I 50.2 35 0.00076 23.6 4.2 30 470-499 2-37 (39)
354 KOG3807 Predicted membrane pro 49.9 94 0.002 34.2 9.1 17 414-430 230-246 (556)
355 PRK13184 pknD serine/threonine 49.8 1.1E+02 0.0024 37.2 10.7 92 412-508 531-629 (932)
356 PF13226 DUF4034: Domain of un 49.8 1.3E+02 0.0029 31.5 10.0 67 453-519 61-148 (277)
357 COG2979 Uncharacterized protei 49.6 3.1E+02 0.0067 28.2 13.3 88 365-470 104-192 (225)
358 PF10345 Cohesin_load: Cohesin 49.3 1.9E+02 0.0041 32.9 12.0 95 417-518 8-114 (608)
359 PF10516 SHNi-TPR: SHNi-TPR; 49.1 28 0.00062 26.0 3.7 30 435-465 2-31 (38)
360 COG5107 RNA14 Pre-mRNA 3'-end 48.8 58 0.0013 36.9 7.5 50 447-497 444-493 (660)
361 cd02682 MIT_AAA_Arch MIT: doma 48.7 37 0.00081 29.0 4.9 18 488-505 31-48 (75)
362 COG3118 Thioredoxin domain-con 47.8 1.6E+02 0.0035 31.5 10.3 62 456-518 223-286 (304)
363 COG3629 DnrI DNA-binding trans 45.6 62 0.0013 34.0 6.9 80 413-505 166-245 (280)
364 COG4455 ImpE Protein of avirul 45.3 93 0.002 32.4 7.8 59 447-506 13-71 (273)
365 KOG0276 Vesicle coat complex C 45.2 76 0.0016 37.1 7.9 31 431-462 663-693 (794)
366 PF02184 HAT: HAT (Half-A-TPR) 45.0 38 0.00082 24.8 3.7 28 415-443 2-29 (32)
367 PF09670 Cas_Cas02710: CRISPR- 44.3 2.2E+02 0.0047 30.8 11.0 50 414-464 145-198 (379)
368 cd02681 MIT_calpain7_1 MIT: do 44.2 48 0.001 28.3 4.8 17 447-463 18-34 (76)
369 PRK13184 pknD serine/threonine 43.3 1.6E+02 0.0036 35.8 10.7 91 414-506 489-588 (932)
370 PRK15490 Vi polysaccharide bio 43.1 1.3E+02 0.0028 34.8 9.4 45 412-459 54-98 (578)
371 PF09205 DUF1955: Domain of un 41.9 1.7E+02 0.0038 28.4 8.6 80 414-499 70-149 (161)
372 PF14863 Alkyl_sulf_dimr: Alky 41.9 66 0.0014 30.4 5.9 50 432-482 68-117 (141)
373 COG4941 Predicted RNA polymera 41.8 2.6E+02 0.0056 30.9 10.8 92 414-508 310-403 (415)
374 PF14863 Alkyl_sulf_dimr: Alky 41.2 1.2E+02 0.0025 28.8 7.4 30 414-443 84-113 (141)
375 KOG0546 HSP90 co-chaperone CPR 41.1 28 0.00061 37.9 3.6 64 414-478 289-352 (372)
376 COG3947 Response regulator con 39.7 3.2E+02 0.007 29.7 11.0 93 392-496 242-339 (361)
377 smart00299 CLH Clathrin heavy 39.7 1.5E+02 0.0032 26.3 7.6 44 414-459 21-64 (140)
378 COG4649 Uncharacterized protei 38.7 2.1E+02 0.0046 29.0 9.0 102 412-516 106-212 (221)
379 smart00745 MIT Microtubule Int 38.4 54 0.0012 26.8 4.2 16 448-463 21-36 (77)
380 TIGR02664 nitr_red_assoc conse 37.7 23 0.0005 33.9 2.2 56 106-168 59-116 (145)
381 KOG4279 Serine/threonine prote 37.0 1.6E+02 0.0034 35.6 8.8 104 411-515 298-411 (1226)
382 PF12968 DUF3856: Domain of Un 36.9 63 0.0014 30.7 4.8 16 449-464 23-38 (144)
383 cd02683 MIT_1 MIT: domain cont 36.6 79 0.0017 26.8 5.0 15 448-462 19-33 (77)
384 cd02680 MIT_calpain7_2 MIT: do 36.5 67 0.0014 27.5 4.5 17 447-463 18-34 (75)
385 TIGR03504 FimV_Cterm FimV C-te 36.5 61 0.0013 24.9 3.9 25 438-463 3-27 (44)
386 cd02679 MIT_spastin MIT: domai 36.5 59 0.0013 28.0 4.3 15 451-465 5-19 (79)
387 TIGR02996 rpt_mate_G_obs repea 35.1 69 0.0015 24.9 3.9 32 457-489 4-35 (42)
388 cd02677 MIT_SNX15 MIT: domain 33.6 56 0.0012 27.6 3.6 16 448-463 19-34 (75)
389 PF05053 Menin: Menin; InterP 33.3 1.3E+02 0.0029 34.7 7.5 24 437-461 321-344 (618)
390 COG5107 RNA14 Pre-mRNA 3'-end 33.2 2.3E+02 0.005 32.5 9.1 76 448-523 410-485 (660)
391 TIGR02996 rpt_mate_G_obs repea 32.8 78 0.0017 24.6 3.9 34 421-455 3-36 (42)
392 cd02678 MIT_VPS4 MIT: domain c 32.6 1E+02 0.0022 25.5 5.0 17 447-463 18-34 (75)
393 PF04053 Coatomer_WDAD: Coatom 32.5 1.4E+02 0.0031 33.1 7.5 47 414-461 323-373 (443)
394 cd02656 MIT MIT: domain contai 32.5 77 0.0017 26.0 4.2 17 447-463 18-34 (75)
395 KOG2235 Uncharacterized conser 32.1 4.3E+02 0.0093 31.2 11.1 21 416-436 546-566 (776)
396 KOG2758 Translation initiation 31.8 2.3E+02 0.005 31.1 8.5 79 418-499 113-196 (432)
397 PF07079 DUF1347: Protein of u 31.7 4E+02 0.0087 30.5 10.6 105 414-523 394-514 (549)
398 COG2909 MalT ATP-dependent tra 31.4 5.2E+02 0.011 31.6 12.0 103 414-518 429-551 (894)
399 KOG2041 WD40 repeat protein [G 31.1 86 0.0019 37.3 5.6 74 412-496 746-822 (1189)
400 PF10579 Rapsyn_N: Rapsyn N-te 30.7 1.9E+02 0.0042 25.3 6.4 50 414-464 20-72 (80)
401 PF13226 DUF4034: Domain of un 30.1 6E+02 0.013 26.8 11.2 58 419-476 62-140 (277)
402 PF08311 Mad3_BUB1_I: Mad3/BUB 29.8 2.1E+02 0.0045 26.1 7.0 44 453-497 81-126 (126)
403 PF06022 Cir_Bir_Yir: Plasmodi 29.0 53 0.0011 34.4 3.3 29 222-250 51-89 (280)
404 PRK15180 Vi polysaccharide bio 28.9 1.4E+02 0.0031 34.3 6.7 47 412-459 301-347 (831)
405 PRK15326 type III secretion sy 28.6 3.2E+02 0.0069 24.0 7.4 33 448-480 20-52 (80)
406 KOG2422 Uncharacterized conser 28.5 8.1E+02 0.017 28.9 12.5 24 483-506 355-379 (665)
407 COG2909 MalT ATP-dependent tra 28.0 2E+02 0.0043 34.9 7.9 88 435-524 416-517 (894)
408 KOG0890 Protein kinase of the 27.5 3E+02 0.0066 36.8 9.9 81 416-500 1645-1732(2382)
409 PF15015 NYD-SP12_N: Spermatog 27.4 6E+02 0.013 29.0 10.9 72 444-516 237-311 (569)
410 KOG3783 Uncharacterized conser 26.5 2.4E+02 0.0052 32.5 7.9 80 417-500 250-333 (546)
411 PF04053 Coatomer_WDAD: Coatom 26.4 93 0.002 34.5 4.8 65 422-497 310-374 (443)
412 cd02682 MIT_AAA_Arch MIT: doma 26.4 2.9E+02 0.0062 23.7 6.7 21 453-473 31-51 (75)
413 KOG4279 Serine/threonine prote 25.8 50 0.0011 39.4 2.6 106 412-519 213-335 (1226)
414 KOG0276 Vesicle coat complex C 25.8 2.8E+02 0.0062 32.7 8.4 111 414-535 621-752 (794)
415 cd02681 MIT_calpain7_1 MIT: do 25.4 46 0.001 28.4 1.8 18 411-428 17-34 (76)
416 cd02677 MIT_SNX15 MIT: domain 25.2 96 0.0021 26.2 3.6 42 417-467 4-45 (75)
417 PF12854 PPR_1: PPR repeat 24.5 1.5E+02 0.0032 20.9 4.0 26 434-460 7-32 (34)
418 smart00745 MIT Microtubule Int 24.5 1.3E+02 0.0027 24.6 4.2 44 415-467 4-47 (77)
419 PF13041 PPR_2: PPR repeat fam 24.4 2.9E+02 0.0063 20.3 6.1 16 448-463 16-31 (50)
420 PRK15180 Vi polysaccharide bio 24.1 3.5E+02 0.0076 31.3 8.5 92 413-505 711-812 (831)
421 PF05053 Menin: Menin; InterP 23.8 2E+02 0.0044 33.4 6.8 69 413-498 273-346 (618)
422 PRK15490 Vi polysaccharide bio 23.3 2.5E+02 0.0053 32.6 7.5 80 416-502 24-103 (578)
423 KOG0687 26S proteasome regulat 22.9 4.2E+02 0.0092 29.1 8.6 99 389-496 65-174 (393)
424 PF10255 Paf67: RNA polymerase 22.8 1.5E+02 0.0033 32.8 5.5 27 435-462 165-191 (404)
425 COG3947 Response regulator con 22.7 1.5E+02 0.0032 32.2 5.1 47 414-461 293-339 (361)
426 PF09670 Cas_Cas02710: CRISPR- 22.4 4.7E+02 0.01 28.3 9.1 59 439-499 136-198 (379)
427 KOG1839 Uncharacterized protei 22.3 1.2E+02 0.0027 37.8 5.1 105 418-524 956-1077(1236)
428 KOG2468 Dolichol kinase [Lipid 22.2 62 0.0013 36.4 2.4 28 222-249 264-293 (510)
429 PF11817 Foie-gras_1: Foie gra 21.8 4.8E+02 0.01 26.2 8.5 30 435-465 179-208 (247)
430 cd02680 MIT_calpain7_2 MIT: do 21.4 60 0.0013 27.7 1.7 21 409-429 15-35 (75)
431 TIGR01590 yir-bir-cir_Pla yir/ 21.4 90 0.0019 31.1 3.2 29 222-250 35-73 (199)
432 cd02684 MIT_2 MIT: domain cont 21.2 2.1E+02 0.0045 24.1 4.9 17 447-463 18-34 (75)
433 KOG0128 RNA-binding protein SA 20.9 5.2E+02 0.011 31.4 9.5 85 414-499 127-219 (881)
434 cd02656 MIT MIT: domain contai 20.7 1.7E+02 0.0037 23.9 4.2 43 416-467 3-45 (75)
435 KOG2581 26S proteasome regulat 20.5 3.3E+02 0.0072 30.7 7.4 58 447-505 221-282 (493)
436 KOG2581 26S proteasome regulat 20.3 1.7E+02 0.0038 32.8 5.3 57 412-469 221-281 (493)
437 cd02678 MIT_VPS4 MIT: domain c 20.2 2.4E+02 0.0052 23.3 5.0 43 416-467 3-45 (75)
438 PF01239 PPTA: Protein prenylt 20.2 2.7E+02 0.0058 19.0 4.5 25 490-514 3-27 (31)
439 COG1747 Uncharacterized N-term 20.1 7E+02 0.015 29.2 9.9 50 482-531 217-270 (711)
440 PRK15326 type III secretion sy 20.0 2.8E+02 0.006 24.3 5.4 32 484-515 21-52 (80)
No 1
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.52 E-value=1.5e-13 Score=125.13 Aligned_cols=103 Identities=16% Similarity=0.141 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
|++++|..+|++++.++|++..++.++|.++. ..|++++|+.+|++|++++|+++.+++++|.++.. .|++++|+..|
T Consensus 38 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~eAi~~~ 115 (144)
T PRK15359 38 GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPGLAREAF 115 (144)
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 89999999999999999999999999999888 69999999999999999999999999999998876 47999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385 494 LEAISADPTNSYYAANYANFLWNTG 518 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elG 518 (536)
++|++++|+++.++.+.+.++..++
T Consensus 116 ~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 116 QTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999886543
No 2
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.46 E-value=7e-13 Score=127.32 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=100.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--HHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRND--LWAAE 490 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD--~eEAe 490 (536)
.++.++++..|+++++.+|+|+.+|.++|.++. ..|++++|+.+|++|++++|+|++++.++|.+++...|+ +++|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 368899999999999999999999999999877 699999999999999999999999999999987555556 59999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385 491 ETFLEAISADPTNSYYAANYANFLWNTGGEDT 522 (536)
Q Consensus 491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~ 522 (536)
+.+++|++++|+++.++.++|..+.+.|++++
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~ 162 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQ 162 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999998754
No 3
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.41 E-value=1.3e-12 Score=118.94 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009385 419 TELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAIS 498 (536)
Q Consensus 419 Aee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALe 498 (536)
-+.+|++|++++|++ +.++|..+. ..|++++|..+|++++.++|++..++.++|.++... |++++|+.+|++|++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASW-QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML-KEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHHh
Confidence 467999999999986 557788887 689999999999999999999999999999988875 699999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCccc
Q 009385 499 ADPTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 499 LDPdNpeal~NyA~~L~elGr~E~c 523 (536)
++|+++.+++++|.++..+|+.+++
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eA 111 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLA 111 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999987543
No 4
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=2.3e-12 Score=131.60 Aligned_cols=106 Identities=17% Similarity=0.250 Sum_probs=100.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
++|.+|+..|.+||+++|+|+..|.|.|.+|. ..|.++.|++..+.||.+||.+..+|..||.+++- .|++++|++.|
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A~~ay 172 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEAIEAY 172 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHHHHHH
Confidence 79999999999999999999999999999988 69999999999999999999999999999998886 47999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
+|||++||+|..+..+|..+-..+++..
T Consensus 173 kKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 173 KKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999888777665
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.35 E-value=1.5e-12 Score=142.55 Aligned_cols=107 Identities=19% Similarity=0.201 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
|..+-|+..|++||+++|+.++++.|+|.++- ..|+.++|+.||.+||++.|+++++++|||.++.++ |.+++|..+|
T Consensus 300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALk-d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~-~~~e~A~~ly 377 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQPNFPDAYNNLANALK-DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ-GKIEEATRLY 377 (966)
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH-hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-ccchHHHHHH
Confidence 56666666666666666666666666666665 356666666666666666666666666666666664 4666666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGEDT 522 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E~ 522 (536)
++|++..|.-+.++.|+|.+|.+.|..++
T Consensus 378 ~~al~v~p~~aaa~nNLa~i~kqqgnl~~ 406 (966)
T KOG4626|consen 378 LKALEVFPEFAAAHNNLASIYKQQGNLDD 406 (966)
T ss_pred HHHHhhChhhhhhhhhHHHHHHhcccHHH
Confidence 66666666666666666666666666554
No 6
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.33 E-value=1e-11 Score=108.35 Aligned_cols=90 Identities=20% Similarity=0.199 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
+++++|+.+|++++..+|+++.++.++|.+++ ..|++++|+++|+++++++|+++..++++|.+++.. |++++|+.+|
T Consensus 31 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~ 108 (135)
T TIGR02552 31 GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL-GEPESALKAL 108 (135)
T ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 66777777777777777777777777776665 467777777777777777777777777777666553 5677777777
Q ss_pred HHHHHhCCCCHH
Q 009385 494 LEAISADPTNSY 505 (536)
Q Consensus 494 eKALeLDPdNpe 505 (536)
+++++++|++..
T Consensus 109 ~~al~~~p~~~~ 120 (135)
T TIGR02552 109 DLAIEICGENPE 120 (135)
T ss_pred HHHHHhccccch
Confidence 777777776665
No 7
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=1.2e-11 Score=134.55 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=93.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
+++++|+.++++|++++|+++.++..+|.++. ..|++++|+.+|++|++++|+++.+++.+|.++.. .|++++|+.+|
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 56889999999999999999999999998777 58999999999999999999999999999988876 46899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E~c 523 (536)
++|++++|+++.++..++.+++..|+++++
T Consensus 396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 396 NECLKLDPTRAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred HHHHhcCCCChhhHHHHHHHHHhccCHHHH
Confidence 999999999888777777777788886543
No 8
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.31 E-value=3e-11 Score=125.53 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=95.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
++|++|+.+|.+||+++|+++.+|+++|.++. ..|++++|+.+|++||+++|+++.+++++|.+++.. |++++|+.+|
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l-g~~~eA~~~~ 93 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL-EEYQTAKAAL 93 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh-CCHHHHHHHH
Confidence 89999999999999999999999999999887 699999999999999999999999999999988875 6999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHc
Q 009385 494 LEAISADPTNSYYAANYANFLWNT 517 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~el 517 (536)
++|++++|+++.+...++.+...+
T Consensus 94 ~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 94 EKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999988888876555
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.30 E-value=1e-11 Score=136.06 Aligned_cols=109 Identities=20% Similarity=0.191 Sum_probs=92.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
|.|+..+|+++|.+||.+.|+++++++|||.++. .+|.+++|...|++|++..|+.+.+++|||.+|.+ +|++++|+.
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~-E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq-qgnl~~Ai~ 409 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR-EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ-QGNLDDAIM 409 (966)
T ss_pred hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh-cccHHHHHH
Confidence 5588888888888888888888888888888877 47888888888888888888888888888877654 568888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385 492 TFLEAISADPTNSYYAANYANFLWNTGGEDT 522 (536)
Q Consensus 492 ~feKALeLDPdNpeal~NyA~~L~elGr~E~ 522 (536)
+|++||+++|..++++.|+|+.|-++|+...
T Consensus 410 ~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 410 CYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 8888888888888888888888888887654
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.29 E-value=2.7e-11 Score=132.68 Aligned_cols=111 Identities=15% Similarity=0.235 Sum_probs=88.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
.+++++|+.+|+++++++|+++.+++++|.+++ ..|++++|+.+|+++++++|++..++.++|.+++. .|++++|+.+
T Consensus 378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~eA~~~ 455 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EGSIASSMAT 455 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence 367888888888888888888888888887776 57888888888888888888888888888877765 4578888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385 493 FLEAISADPTNSYYAANYANFLWNTGGEDTCFP 525 (536)
Q Consensus 493 feKALeLDPdNpeal~NyA~~L~elGr~E~clp 525 (536)
|+++++.+|+++.++.++|.++..+|+.+++..
T Consensus 456 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 456 FRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 888888888888888888888888887766554
No 11
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.29 E-value=1.7e-11 Score=121.89 Aligned_cols=103 Identities=20% Similarity=0.324 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
|++..|..-+++||+.||++..+|..+|.++. ..|+.+.|.+.|++||.++|++.++++|||.||+.+ |++++|..+|
T Consensus 49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq-~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q-g~~~eA~q~F 126 (250)
T COG3063 49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQ-KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ-GRPEEAMQQF 126 (250)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC-CChHHHHHHH
Confidence 56666666666666666666666666654433 456666666666666666666666666666666553 3566666666
Q ss_pred HHHHHhCCCCHH---HHHHHHHHHHHcCC
Q 009385 494 LEAISADPTNSY---YAANYANFLWNTGG 519 (536)
Q Consensus 494 eKALeLDPdNpe---al~NyA~~L~elGr 519 (536)
++|++ +|..++ .+-|+|.+-.+.|+
T Consensus 127 ~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 127 ERALA-DPAYGEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred HHHHh-CCCCCCcchhhhhhHHHHhhcCC
Confidence 65555 344332 34555555555554
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.27 E-value=4.1e-11 Score=131.24 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
|++++|+..|+++++++|++..++.++|.++. ..|++++|+.+|+++++++|+++.+++.+|.+++. .|++++|+.+|
T Consensus 345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~ 422 (615)
T TIGR00990 345 GKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEFAQAGKDY 422 (615)
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 89999999999999999999999999999887 68999999999999999999999999999998876 47999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGEDTCFP 525 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E~clp 525 (536)
++|++++|++..++.++|.++..+|+.++++.
T Consensus 423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 454 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMA 454 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999998765543
No 13
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=5.4e-11 Score=119.95 Aligned_cols=91 Identities=18% Similarity=0.221 Sum_probs=86.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
.|++++|+..|++|++++|+++.+|+++|.++. ..|++++|+..|+++++++|++..++.++|.+++.. |++++|++.
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~-g~~~eA~~~ 154 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG-GRYELAQDD 154 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHH
Confidence 389999999999999999999999999998877 699999999999999999999999999999988874 699999999
Q ss_pred HHHHHHhCCCCHH
Q 009385 493 FLEAISADPTNSY 505 (536)
Q Consensus 493 feKALeLDPdNpe 505 (536)
|+++++++|+++.
T Consensus 155 ~~~al~~~P~~~~ 167 (296)
T PRK11189 155 LLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHhCCCCHH
Confidence 9999999999984
No 14
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=2.4e-11 Score=132.31 Aligned_cols=109 Identities=12% Similarity=0.070 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI--------VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRND 485 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e--------~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD 485 (536)
+++++|+.+|++|++++|+++.+|.++|.++.. ..+++++|+.++++|++++|+++.++..+|.++.. .|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~-~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI-HSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccC
Confidence 578899999999999999999999999976542 12458999999999999999999999999998876 469
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385 486 LWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 486 ~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c 523 (536)
+++|+.+|++|++++|+++.+++++|.++...|+.+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEA 391 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999997643
No 15
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=1.5e-11 Score=135.22 Aligned_cols=111 Identities=14% Similarity=0.195 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
.+|++|..+|++||..+|+|..+|+++|.+|. ++++++.|+-+|++|++++|.|...+..+|.++.. .|+.++|+.+|
T Consensus 469 ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~AL~~~ 546 (638)
T KOG1126|consen 469 EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKALQLY 546 (638)
T ss_pred HHHHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHHHHHH
Confidence 69999999999999999999999999998887 69999999999999999999999999999998876 56999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCccccCC
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGEDTCFPL 526 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E~clpl 526 (536)
++|+.+||.|+...++.|.+|+.++++++|+-.
T Consensus 547 ~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~ 579 (638)
T KOG1126|consen 547 EKAIHLDPKNPLCKYHRASILFSLGRYVEALQE 579 (638)
T ss_pred HHHHhcCCCCchhHHHHHHHHHhhcchHHHHHH
Confidence 999999999999999999999999999877643
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.23 E-value=7.5e-11 Score=137.19 Aligned_cols=105 Identities=14% Similarity=0.099 Sum_probs=100.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
|++++|+.+|++|++++|+ +.++.++|.++. ..|++++|+.+|+++++++|+++.+++++|.++... |++++|+++|
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~-G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS-GDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHH
Confidence 8999999999999999996 999999998887 699999999999999999999999999999988874 6999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
++|++++|+++.++.++|.++..+|+.+
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999999999864
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.21 E-value=2.3e-10 Score=103.28 Aligned_cols=110 Identities=23% Similarity=0.325 Sum_probs=99.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE--PPDAESFSKYASFLWRVRNDLWAAE 490 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD--PddaeAL~nLG~~L~e~~GD~eEAe 490 (536)
.+++++|+.+|+++++.+|++..++.++|.++. ..|++++|+++|++++... |.+...+.++|.++... |++++|+
T Consensus 78 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~ 155 (234)
T TIGR02521 78 LGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA-GDFDKAE 155 (234)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc-CCHHHHH
Confidence 389999999999999999999999999998887 6899999999999999864 56678899999988764 6999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385 491 ETFLEAISADPTNSYYAANYANFLWNTGGEDTCF 524 (536)
Q Consensus 491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~cl 524 (536)
.+|+++++.+|+++..+..+|.++...|+.+++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 156 KYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999987664
No 18
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.21 E-value=1.5e-10 Score=100.92 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=94.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 009385 421 LLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISAD 500 (536)
Q Consensus 421 e~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLD 500 (536)
+.|++++.++|++..+++.+|..++ ..|++++|..+|++++.++|+++.++.++|.++... |++++|+.+|+++++++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML-KEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence 4789999999999999999998888 689999999999999999999999999999998875 59999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCccc
Q 009385 501 PTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 501 PdNpeal~NyA~~L~elGr~E~c 523 (536)
|+++..++++|.++...|+.+.+
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A 104 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESA 104 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999997665
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.21 E-value=2.4e-10 Score=103.16 Aligned_cols=111 Identities=17% Similarity=0.199 Sum_probs=98.5
Q ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385 413 YADYFRTELLYQTGLAQE--PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE 490 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLd--Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe 490 (536)
.|++++|+.+|++++... |.....+.++|.+++ ..|++++|+.+|+++++.+|+++.++..+|.++.. .|++++|+
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~ 189 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL-KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL-RGQYKDAR 189 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH-cCCHHHHH
Confidence 379999999999999864 567788999998877 68999999999999999999999999999998876 46999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385 491 ETFLEAISADPTNSYYAANYANFLWNTGGEDTCFP 525 (536)
Q Consensus 491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~clp 525 (536)
.++++++++.|+++..+..++.++...|+.+++..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999998899999999998776543
No 20
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.18 E-value=1.5e-10 Score=115.17 Aligned_cols=106 Identities=21% Similarity=0.270 Sum_probs=97.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV--EPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL--DPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
|+.+.|.+.|++||.++|++.++++|||.+|+ .+|++++|..+|++|+.. .|..++.+-|+|.+.++. |+.+.|++
T Consensus 83 Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~-gq~~~A~~ 160 (250)
T COG3063 83 GENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKA-GQFDQAEE 160 (250)
T ss_pred CChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc-CCchhHHH
Confidence 89999999999999999999999999999999 699999999999999973 245568899999888764 69999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 492 TFLEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 492 ~feKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
+|++++++||+++.....++..+++.|++-
T Consensus 161 ~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 161 YLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 999999999999999999999999999863
No 21
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.17 E-value=2.1e-10 Score=129.31 Aligned_cols=109 Identities=8% Similarity=-0.072 Sum_probs=103.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
.|.+++|+.+++++++++|++..++.++|.+|. ..+++++|...+++++..+|+++.+++.+|.+|.+. |++++|+++
T Consensus 99 ~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~-g~~~~A~~~ 176 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEI-GQSEQADAC 176 (694)
T ss_pred cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh-cchHHHHHH
Confidence 389999999999999999999999999999998 689999999999999999999999999999988775 699999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385 493 FLEAISADPTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 493 feKALeLDPdNpeal~NyA~~L~elGr~E~c 523 (536)
|+++++.+|+++.++.++|+.|..+|+.+++
T Consensus 177 y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 177 FERLSRQHPEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999987653
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.17 E-value=7.8e-11 Score=116.06 Aligned_cols=113 Identities=25% Similarity=0.347 Sum_probs=90.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
.|+.++|+.+|++||+++|+|+.++..++.++. ..|+++++.+.+++..+..|+|+..+..+|.++... |++++|..+
T Consensus 159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l-g~~~~Al~~ 236 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL-GRYEEALEY 236 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH-T-HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc-ccccccccc
Confidence 489999999999999999999999999998877 589999999999999999999999999999988875 699999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCccccCCC
Q 009385 493 FLEAISADPTNSYYAANYANFLWNTGGEDTCFPLS 527 (536)
Q Consensus 493 feKALeLDPdNpeal~NyA~~L~elGr~E~clpl~ 527 (536)
|+++++.+|+|+.++.+||.+|...|+.++++.+.
T Consensus 237 ~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 237 LEKALKLNPDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHT------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999998887653
No 23
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.15 E-value=3.4e-10 Score=108.85 Aligned_cols=91 Identities=21% Similarity=0.266 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHD--YDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD--~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
+++++|+.+|++|++++|+++.++.+||.+++...|+ +++|.+.|+++++++|+|+.+++++|..+.+ .|++++|+.
T Consensus 87 g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g~~~~Ai~ 165 (198)
T PRK10370 87 NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QADYAQAIE 165 (198)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cCCHHHHHH
Confidence 8999999999999999999999999999976535676 5999999999999999999999999998887 579999999
Q ss_pred HHHHHHHhCCCCHH
Q 009385 492 TFLEAISADPTNSY 505 (536)
Q Consensus 492 ~feKALeLDPdNpe 505 (536)
+|+++++++|.+..
T Consensus 166 ~~~~aL~l~~~~~~ 179 (198)
T PRK10370 166 LWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHhhCCCCcc
Confidence 99999999987654
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.15 E-value=2.9e-10 Score=126.75 Aligned_cols=107 Identities=19% Similarity=0.213 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDR----AEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA 489 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~de----AEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA 489 (536)
|++++|+..|+++++++|+++.+++++|.++. ..|++++ |+.+|+++++++|+++.++.++|.++... |++++|
T Consensus 226 g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~-~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~-g~~~eA 303 (656)
T PRK15174 226 GKYQEAIQTGESALARGLDGAALRRSLGLAYY-QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT-GQNEKA 303 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-CCHHHH
Confidence 67777777777777777777777777776666 4666664 67777777777777777777777666653 567777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385 490 EETFLEAISADPTNSYYAANYANFLWNTGGEDT 522 (536)
Q Consensus 490 ee~feKALeLDPdNpeal~NyA~~L~elGr~E~ 522 (536)
+.+|+++++++|+++.++.++|.++...|+.++
T Consensus 304 ~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 304 IPLLQQSLATHPDLPYVRAMYARALRQVGQYTA 336 (656)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 777777777777777777777777777776554
No 25
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.14 E-value=2.2e-10 Score=90.18 Aligned_cols=68 Identities=29% Similarity=0.494 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCC
Q 009385 432 NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRN-DLWAAEETFLEAISADP 501 (536)
Q Consensus 432 dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~G-D~eEAee~feKALeLDP 501 (536)
+++.+|.++|..++ ..|++++|+.+|++||+++|+++.+++++|.+++.. | ++++|+++|++|++++|
T Consensus 1 e~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~-~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL-GKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT-TTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHcCc
Confidence 46889999999988 699999999999999999999999999999998875 5 79999999999999998
No 26
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=5e-10 Score=112.96 Aligned_cols=109 Identities=19% Similarity=0.133 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385 414 ADYFRTELLYQTGLAQ---EPN-DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA 489 (536)
Q Consensus 414 gdyeeAee~YqKALeL---dPd-n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA 489 (536)
...+.++..+.++|.. +|. .+..|+++|.++. ..|++++|+..|++|++++|+++.+++++|.++.. .|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYD-SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence 5778899999999964 333 3778999998877 68999999999999999999999999999998876 5799999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385 490 EETFLEAISADPTNSYYAANYANFLWNTGGEDTCF 524 (536)
Q Consensus 490 ee~feKALeLDPdNpeal~NyA~~L~elGr~E~cl 524 (536)
++.|++|++++|+++.++.++|.++...|+.+++.
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 152 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQ 152 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999876553
No 27
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.09 E-value=9.4e-10 Score=118.38 Aligned_cols=107 Identities=21% Similarity=0.274 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
|++++|+.+|+++++.+|+++.++.++|.++. ..|+ ++|+.++++++.+.|+++..+..+|.++.. .|++++|+.+|
T Consensus 784 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~ 860 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE-KGEADRALPLL 860 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 67777777777777777777777777776665 4666 667777777777777777777777777665 35788888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E~c 523 (536)
++|++++|.++.++.+++.+|+..|+.+++
T Consensus 861 ~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 861 RKAVNIAPEAAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888888888888876554
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=7.7e-11 Score=129.73 Aligned_cols=110 Identities=15% Similarity=0.244 Sum_probs=101.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
++++.|+++|+||+.+||++..+|.-+|.=+. ...++|+|..+|++||.++|.|-.||+.+|.++.++ ++++.|+-+|
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq-ek~e~Ae~~f 512 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ-EKLEFAEFHF 512 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheecc-chhhHHHHHH
Confidence 69999999999999999999999999996544 578999999999999999999999999999999875 6999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGEDTCFP 525 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E~clp 525 (536)
++|++++|.|..+...+|.++.++|+.|+++-
T Consensus 513 qkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 513 QKAVEINPSNSVILCHIGRIQHQLKRKDKALQ 544 (638)
T ss_pred HhhhcCCccchhHHhhhhHHHHHhhhhhHHHH
Confidence 99999999999999999999999998776553
No 29
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.06 E-value=1.5e-09 Score=127.77 Aligned_cols=110 Identities=18% Similarity=0.300 Sum_probs=89.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLW------------ 480 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~------------ 480 (536)
.+++++|+.+|+++++++|+++.++.++|.++. ..|++++|+++|+++++++|++..++..++.++.
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~ 442 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM-ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIA 442 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 378888888899999888888888888888777 5888888999999998888888888776665431
Q ss_pred -----------------------------HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385 481 -----------------------------RVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 481 -----------------------------e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c 523 (536)
...|++++|+++|++|++++|+++.+++++|.+|...|+.+++
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 1246888888888888888888888888888888888887544
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.05 E-value=8.4e-10 Score=128.55 Aligned_cols=106 Identities=16% Similarity=0.060 Sum_probs=97.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
..|++++|+.+|++|++++|+++.+++++|.++. ..|++++|+++|++|++++|+++.+++++|.++.. .|++++|+.
T Consensus 621 ~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~-~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~-lGd~~eA~~ 698 (987)
T PRK09782 621 QRHNVPAAVSDLRAALELEPNNSNYQAALGYALW-DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR-LDDMAATQH 698 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHH
Confidence 3489999999999999999999999999998888 68999999999999999999999999999998876 579999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385 492 TFLEAISADPTNSYYAANYANFLWNTGG 519 (536)
Q Consensus 492 ~feKALeLDPdNpeal~NyA~~L~elGr 519 (536)
+|++|++++|+++.+...+|.++.....
T Consensus 699 ~l~~Al~l~P~~a~i~~~~g~~~~~~~~ 726 (987)
T PRK09782 699 YARLVIDDIDNQALITPLTPEQNQQRFN 726 (987)
T ss_pred HHHHHHhcCCCCchhhhhhhHHHHHHHH
Confidence 9999999999999998888888766553
No 31
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.05 E-value=2.8e-09 Score=80.85 Aligned_cols=87 Identities=22% Similarity=0.404 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
+++++|+..|+++++..|++..++.++|.++. ..+++++|+.+|++++...|.+..++..+|.++... |++++|..++
T Consensus 14 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~ 91 (100)
T cd00189 14 GDYDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL-GKYEEALEAY 91 (100)
T ss_pred hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH-HhHHHHHHHH
Confidence 78999999999999999999999999998877 589999999999999999999999999999888765 5899999999
Q ss_pred HHHHHhCCC
Q 009385 494 LEAISADPT 502 (536)
Q Consensus 494 eKALeLDPd 502 (536)
+++++++|+
T Consensus 92 ~~~~~~~~~ 100 (100)
T cd00189 92 EKALELDPN 100 (100)
T ss_pred HHHHccCCC
Confidence 999998874
No 32
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.03 E-value=2e-09 Score=120.17 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=98.8
Q ss_pred CCHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385 414 ADYF----RTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA 489 (536)
Q Consensus 414 gdye----eAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA 489 (536)
|+++ +|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++.. .|++++|
T Consensus 260 G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~-~G~~~eA 337 (656)
T PRK15174 260 GRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI-RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ-VGQYTAA 337 (656)
T ss_pred CCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence 5666 4899999999999999999999999888 68999999999999999999999999999998876 4799999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385 490 EETFLEAISADPTNSYYAANYANFLWNTGGEDTCF 524 (536)
Q Consensus 490 ee~feKALeLDPdNpeal~NyA~~L~elGr~E~cl 524 (536)
++.|+++++.+|+++.++..+|.+|...|+.+++.
T Consensus 338 ~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~ 372 (656)
T PRK15174 338 SDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAE 372 (656)
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999888888899999999876543
No 33
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.02 E-value=4e-09 Score=99.73 Aligned_cols=110 Identities=8% Similarity=0.008 Sum_probs=91.7
Q ss_pred ccc-HHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 009385 391 SLD-HETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA 469 (536)
Q Consensus 391 ~lD-~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda 469 (536)
.++ ++.+..+-+.. +.+ -..|++++|+..|+-+..+||.+...|+|||.++. .+|++++|+.+|.+|+.++|+|+
T Consensus 28 ~~~~~~~l~~lY~~A-~~l--y~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 28 DDDVTQPLNTLYRYA-MQL--MEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred CCChHHHHHHHHHHH-HHH--HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCc
Confidence 445 56666444322 122 13499999999999999999999999999998766 79999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 009385 470 ESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSY 505 (536)
Q Consensus 470 eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpe 505 (536)
.++.++|.++... |+.++|++.|+.|+..--.+++
T Consensus 104 ~~~~~ag~c~L~l-G~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 104 QAPWAAAECYLAC-DNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred hHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhccChh
Confidence 9999999988875 6999999999999998744444
No 34
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.02 E-value=2.5e-09 Score=107.64 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=106.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
.|+|.+|+..+++|..++|+|.++|..+|.+|- ..|+++.|...|.+|+++.|+++.+++|+|..++. +||++.|+.+
T Consensus 113 ~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd~~~A~~l 190 (257)
T COG5010 113 NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGDLEDAETL 190 (257)
T ss_pred hcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCCHHHHHHH
Confidence 389999999999999999999999999998877 69999999999999999999999999999987764 6899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCccccCCCCCC
Q 009385 493 FLEAISADPTNSYYAANYANFLWNTGGEDTCFPLSSPD 530 (536)
Q Consensus 493 feKALeLDPdNpeal~NyA~~L~elGr~E~clpl~~~~ 530 (536)
+.+|...-+.+..+..|++.+....|+.+.+-.+.+++
T Consensus 191 ll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 191 LLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 99999999999999999999999999987666655544
No 35
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.02 E-value=1.7e-09 Score=102.16 Aligned_cols=95 Identities=11% Similarity=-0.008 Sum_probs=87.0
Q ss_pred HHHHhC-CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 009385 425 TGLAQE-PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTN 503 (536)
Q Consensus 425 KALeLd-Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN 503 (536)
....++ ++.-+.++.||..++ ..|++++|++.|+-+..+||.++..|++||.++.. +|++++|++.|.+|+.++|+|
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCC
Confidence 345567 888899999999888 59999999999999999999999999999988765 579999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCc
Q 009385 504 SYYAANYANFLWNTGGED 521 (536)
Q Consensus 504 peal~NyA~~L~elGr~E 521 (536)
|..+.|.|.++...|+.+
T Consensus 103 p~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 103 PQAPWAAAECYLACDNVC 120 (157)
T ss_pred chHHHHHHHHHHHcCCHH
Confidence 999999999999999864
No 36
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.00 E-value=7.8e-09 Score=86.74 Aligned_cols=92 Identities=21% Similarity=0.220 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHH
Q 009385 414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLW 487 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~e 487 (536)
+++++|+..|.+++..+|++ +.+++.+|.+++ ..|++++|+.+|++++..+|++ +.++..+|.++... ++++
T Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~ 93 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL-GDKE 93 (119)
T ss_pred CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh-CChH
Confidence 89999999999999999987 578999999888 6899999999999999999986 67899999988764 6999
Q ss_pred HHHHHHHHHHHhCCCCHHHH
Q 009385 488 AAEETFLEAISADPTNSYYA 507 (536)
Q Consensus 488 EAee~feKALeLDPdNpeal 507 (536)
+|+.+|+++++..|+++.+.
T Consensus 94 ~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 94 KAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHHHHCcCChhHH
Confidence 99999999999999998754
No 37
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.98 E-value=1.5e-09 Score=84.85 Aligned_cols=64 Identities=27% Similarity=0.417 Sum_probs=57.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 009385 439 NYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNS 504 (536)
Q Consensus 439 NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNp 504 (536)
.+|..++ ..|++++|+++|+++++.+|++++++..+|.+++.. |++++|+.+|+++++++|+||
T Consensus 2 ~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALY-QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ-GRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHH-HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCCC
Confidence 5787777 699999999999999999999999999999999874 699999999999999999986
No 38
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.98 E-value=5.4e-09 Score=112.62 Aligned_cols=107 Identities=17% Similarity=0.254 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
+++++|+..|+++++.+|+++.++..+|.+++ ..|++++|++.++++++.+|++..++..+|.++.. .|++++|+.+|
T Consensus 139 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~ 216 (899)
T TIGR02917 139 GQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDALLLKGDLLLS-LGNIELALAAY 216 (899)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 55666666666666666666666666665555 35666666666666666666666666666655544 34666666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGEDT 522 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E~ 522 (536)
+++++++|+++..+..++.++...|+.++
T Consensus 217 ~~a~~~~p~~~~~~~~~~~~~~~~g~~~~ 245 (899)
T TIGR02917 217 RKAIALRPNNPAVLLALATILIEAGEFEE 245 (899)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 66666666666666666666666665443
No 39
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.95 E-value=5.8e-09 Score=122.77 Aligned_cols=106 Identities=20% Similarity=0.215 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH--------------HHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAES--------------FSKYASFL 479 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeA--------------L~nLG~~L 479 (536)
+++++|+..|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|++... +..+|..+
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYS-QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 67777777777777777777777777776666 4677777777777777777765431 12234444
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 480 WRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 480 ~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
.. .|++++|+.+|++|++++|+++.++.++|.++...|+.+
T Consensus 362 ~~-~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~ 402 (1157)
T PRK11447 362 LK-ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYA 402 (1157)
T ss_pred HH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 43 356777777777777777777777777777777777654
No 40
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.95 E-value=1.7e-08 Score=92.92 Aligned_cols=104 Identities=21% Similarity=0.224 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------cC
Q 009385 414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV------RN 484 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~------~G 484 (536)
+++++|+.+|++|+.+.|+. +.++.++|.++. ..|++++|+.+|++|++++|.+..++.++|.++... .|
T Consensus 49 g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g 127 (168)
T CHL00033 49 GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQG 127 (168)
T ss_pred CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcc
Confidence 89999999999999998764 458999998877 699999999999999999999999999999988722 24
Q ss_pred CHH-------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 485 DLW-------AAEETFLEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 485 D~e-------EAee~feKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
+++ +|+.+|++++..+|++.. ..+..+...|+.|
T Consensus 128 ~~~~A~~~~~~a~~~~~~a~~~~p~~~~---~~~~~~~~~~~~~ 168 (168)
T CHL00033 128 DSEIAEAWFDQAAEYWKQAIALAPGNYI---EAQNWLKITGRFE 168 (168)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCcccHH---HHHHHHHHhcCCC
Confidence 554 777888889999998764 3445566666543
No 41
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.94 E-value=8.7e-09 Score=116.65 Aligned_cols=109 Identities=20% Similarity=0.258 Sum_probs=100.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
.+++.+|+.+|+++|+++|+++.++.++|.++. ..|++++|+.+++++++.+|+++. +..+|.++.. .|++++|+..
T Consensus 62 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g~~~~Al~~ 138 (765)
T PRK10049 62 LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AGRHWDELRA 138 (765)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CCCHHHHHHH
Confidence 389999999999999999999999999998877 689999999999999999999999 9999998876 4799999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385 493 FLEAISADPTNSYYAANYANFLWNTGGEDTCF 524 (536)
Q Consensus 493 feKALeLDPdNpeal~NyA~~L~elGr~E~cl 524 (536)
|+++++++|+++.++..++.++...|..+.++
T Consensus 139 l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 139 MTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 99999999999999999999999888766443
No 42
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.89 E-value=1.9e-08 Score=96.06 Aligned_cols=109 Identities=20% Similarity=0.235 Sum_probs=94.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh-----
Q 009385 414 ADYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE---SFSKYASFLWRV----- 482 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~---eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddae---AL~nLG~~L~e~----- 482 (536)
+++++|+..|++++..+|+++ .+++.+|.+++ ..|++++|+..|+++++.+|+++. +++.+|.++...
T Consensus 47 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~ 125 (235)
T TIGR03302 47 GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD 125 (235)
T ss_pred CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence 899999999999999999987 57899999888 689999999999999999999987 788999988763
Q ss_pred --cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCCccc
Q 009385 483 --RNDLWAAEETFLEAISADPTNSYYA-----------------ANYANFLWNTGGEDTC 523 (536)
Q Consensus 483 --~GD~eEAee~feKALeLDPdNpeal-----------------~NyA~~L~elGr~E~c 523 (536)
.|++++|+..|+++++.+|++..+. .++|.+++..|+.+++
T Consensus 126 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 185 (235)
T TIGR03302 126 RDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAA 185 (235)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence 1579999999999999999997542 3567888888887543
No 43
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.88 E-value=3.2e-08 Score=91.78 Aligned_cols=101 Identities=23% Similarity=0.350 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-----
Q 009385 414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRND----- 485 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD----- 485 (536)
+++++|+.+|++++.+.|+. ..++.++|.++. ..|++++|+.+|+++++++|++..++..+|.++... ++
T Consensus 49 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~a~ 126 (172)
T PRK02603 49 GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKR-GEKAEEA 126 (172)
T ss_pred CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CChHhHh
Confidence 89999999999999988764 468999998887 699999999999999999999999999999988764 44
Q ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385 486 ---------LWAAEETFLEAISADPTNSYYAANYANFLWNTGG 519 (536)
Q Consensus 486 ---------~eEAee~feKALeLDPdNpeal~NyA~~L~elGr 519 (536)
+++|+++++++++++|++.. .....+...|+
T Consensus 127 ~~~~~A~~~~~~A~~~~~~a~~~~p~~~~---~~~~~~~~~~~ 166 (172)
T PRK02603 127 GDQDEAEALFDKAAEYWKQAIRLAPNNYI---EAQNWLKTTGR 166 (172)
T ss_pred hCHHHHHHHHHHHHHHHHHHHhhCchhHH---HHHHHHHhcCc
Confidence 68899999999999999842 34444445554
No 44
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.87 E-value=1.6e-08 Score=76.61 Aligned_cols=86 Identities=24% Similarity=0.439 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009385 436 LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLW 515 (536)
Q Consensus 436 AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~ 515 (536)
+++++|..++ ..|++++|+.+|+++++..|++..++..+|.++... +++++|+++|++++++.|.+..++..++.++.
T Consensus 2 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYY-KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 5778898887 589999999999999999999999999999988875 59999999999999999999999999999999
Q ss_pred HcCCCccc
Q 009385 516 NTGGEDTC 523 (536)
Q Consensus 516 elGr~E~c 523 (536)
..|+.+.+
T Consensus 80 ~~~~~~~a 87 (100)
T cd00189 80 KLGKYEEA 87 (100)
T ss_pred HHHhHHHH
Confidence 99987654
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.2e-08 Score=109.59 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
++-..|+..|++|++++|.|..+|+++|+.|. .++.+.=|.-||++|+++.|+|...|..||.++... ++.++|+++|
T Consensus 378 KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl-~~~~eAiKCy 455 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL-NRLEEAIKCY 455 (559)
T ss_pred cccHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh-ccHHHHHHHH
Confidence 56677888888888888888888888887765 577777788888888888888888888888777554 5788888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGEDT 522 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E~ 522 (536)
.+|+...-.+..++..+|.++-++++.++
T Consensus 456 krai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 456 KRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 88888777777777888888777776543
No 46
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=2.4e-09 Score=116.92 Aligned_cols=110 Identities=19% Similarity=0.228 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEP--NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 414 gdyeeAee~YqKALeLdP--dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
..+..-.++|..|...+| .|+++...||.+++ ..|+|++|+.||+.||..+|+|...|+.||..|.. +.+.+||+.
T Consensus 408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIs 485 (579)
T KOG1125|consen 408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAIS 485 (579)
T ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHH
Confidence 456778889999999999 79999999998887 68999999999999999999999999999999987 468999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385 492 TFLEAISADPTNSYYAANYANFLWNTGGEDTCFP 525 (536)
Q Consensus 492 ~feKALeLDPdNpeal~NyA~~L~elGr~E~clp 525 (536)
.|++|+++-|....+++|+|..+.++|-++++.+
T Consensus 486 AY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 486 AYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 9999999999999999999999999998766543
No 47
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.87 E-value=2e-08 Score=101.67 Aligned_cols=112 Identities=16% Similarity=0.110 Sum_probs=96.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPL-----LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDL 486 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~e-----AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~ 486 (536)
..|++++|+..|+++++.+|.+.. .+.++|.++. ..|++++|+++|+++++.+|++..++..+|.++.. .|++
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~ 230 (389)
T PRK11788 153 QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL-ARGDLDAARALLKKALAADPQCVRASILLGDLALA-QGDY 230 (389)
T ss_pred HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-CCCH
Confidence 348999999999999999887643 5567887766 58999999999999999999999999999998876 5799
Q ss_pred HHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCCccccC
Q 009385 487 WAAEETFLEAISADPTNS-YYAANYANFLWNTGGEDTCFP 525 (536)
Q Consensus 487 eEAee~feKALeLDPdNp-eal~NyA~~L~elGr~E~clp 525 (536)
++|+++|+++++.+|++. ..+..++.++...|+.+++..
T Consensus 231 ~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 270 (389)
T PRK11788 231 AAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLE 270 (389)
T ss_pred HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999874 567789999999999877654
No 48
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.86 E-value=2.6e-08 Score=100.92 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD-AESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd-aeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
+++++|+.+|+++++.+|++..++..+|.++. ..|++++|+++|+++++.+|++ ..++..++.++... |++++|+.+
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~ 271 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL-GDEAEGLEF 271 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 56666666666666666666666666665555 4566666666666666666655 34455555555543 466666666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 493 FLEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 493 feKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
++++++.+|++..+ ..++.++...|+.+
T Consensus 272 l~~~~~~~p~~~~~-~~la~~~~~~g~~~ 299 (389)
T PRK11788 272 LRRALEEYPGADLL-LALAQLLEEQEGPE 299 (389)
T ss_pred HHHHHHhCCCchHH-HHHHHHHHHhCCHH
Confidence 66666666655433 55666666666544
No 49
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.8e-08 Score=107.99 Aligned_cols=103 Identities=21% Similarity=0.311 Sum_probs=96.2
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
.+++|..|+.+|.+||..+|+|+.+|.|.|..+. ..+.+..|++..+++++++|++..+|..-|.++...+ +|++|.+
T Consensus 370 k~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk-~ydkAle 447 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK-EYDKALE 447 (539)
T ss_pred hccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3489999999999999999999999999997666 7999999999999999999999999999999998765 8999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385 492 TFLEAISADPTNSYYAANYANFLWN 516 (536)
Q Consensus 492 ~feKALeLDPdNpeal~NyA~~L~e 516 (536)
.|++|+++||++.++...|..++..
T Consensus 448 ay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 448 AYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHH
Confidence 9999999999999999988888765
No 50
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.82 E-value=3.1e-08 Score=94.53 Aligned_cols=111 Identities=19% Similarity=0.097 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-------hCCHHHHHHHHHHHHHhCCCCHHHH-----------
Q 009385 414 ADYFRTELLYQTGLAQEPNDPL---LLANYAQFLYIV-------AHDYDRAEEYFKRAIAVEPPDAESF----------- 472 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~e---AL~NLA~lL~e~-------~GD~deAEe~FeKALeLDPddaeAL----------- 472 (536)
+++++|+..|+++++.+|+++. +++.+|.+++.. .|++++|++.|+++++.+|++..++
T Consensus 84 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~ 163 (235)
T TIGR03302 84 GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN 163 (235)
T ss_pred CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence 8999999999999999999887 688889887631 1789999999999999999997653
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCCccccC
Q 009385 473 ------SKYASFLWRVRNDLWAAEETFLEAISADPTN---SYYAANYANFLWNTGGEDTCFP 525 (536)
Q Consensus 473 ------~nLG~~L~e~~GD~eEAee~feKALeLDPdN---peal~NyA~~L~elGr~E~clp 525 (536)
..+|.+++. .|++.+|+..|+++++..|++ +.++.++|.++..+|+.+++.+
T Consensus 164 ~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 164 RLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred HHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 245666655 579999999999999997765 5789999999999999876544
No 51
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.5e-08 Score=100.29 Aligned_cols=107 Identities=16% Similarity=0.075 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--CHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRN--DLWAAEE 491 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~G--D~eEAee 491 (536)
.+.++-+.-.+.-|..||+|++-|.-||.+|. ..|+++.|+..|.+|+++.|+|++.+..||.+|+...| .-.+|..
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 56777888888888889999998888888877 68889999999999999999999988888888876543 4568888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 492 TFLEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 492 ~feKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
.|++|+++||+|+.+++.||..+++.|++.
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~~~ 244 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGDYA 244 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccHH
Confidence 899999999999888888888888888864
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.2e-08 Score=110.16 Aligned_cols=110 Identities=19% Similarity=0.266 Sum_probs=101.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
|..+..+-...|.+|..+||+|+.+|+..|++++ ..+++++|...|+++++++|+|+.++..++.++|++. ++++++.
T Consensus 372 d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f-lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~-k~~~~m~ 449 (606)
T KOG0547|consen 372 DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF-LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQH-KIAESMK 449 (606)
T ss_pred hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH-HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH-HHHHHHH
Confidence 4467888899999999999999999999999988 6899999999999999999999999999999999875 8999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385 492 TFLEAISADPTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 492 ~feKALeLDPdNpeal~NyA~~L~elGr~E~c 523 (536)
.|+.+++--|+.++.+.-+|.+|...++.+++
T Consensus 450 ~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 450 TFEEAKKKFPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHhhHHhHHHH
Confidence 99999999999999999999999999976543
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.78 E-value=1.2e-08 Score=100.54 Aligned_cols=112 Identities=19% Similarity=0.232 Sum_probs=92.9
Q ss_pred ccCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385 412 DYADYFRTELLYQTGLAQE--PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA 489 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLd--Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA 489 (536)
..++++++...+.++.... |+++..|..+|.++. ..|+.++|+++|++||+++|+|++++..++.++... |++++|
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~-~~~~~~ 199 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLIDM-GDYDEA 199 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTT-CHHHHH
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-CChHHH
Confidence 3479999999999988766 788999999998877 699999999999999999999999999999988764 689999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385 490 EETFLEAISADPTNSYYAANYANFLWNTGGEDTCFP 525 (536)
Q Consensus 490 ee~feKALeLDPdNpeal~NyA~~L~elGr~E~clp 525 (536)
++.+++..+..|+++.++..+|.++..+|+.++++.
T Consensus 200 ~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 200 REALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp HHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHhccccccccccc
Confidence 999999999889999999999999999999876553
No 54
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.77 E-value=1.5e-08 Score=83.45 Aligned_cols=81 Identities=20% Similarity=0.322 Sum_probs=72.1
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPN--DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE 490 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPd--n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe 490 (536)
.+++++|+.+|+++++.+|. +...++++|.+++ ..|++++|..++++ +..+|.+...+..+|.++... |++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l-~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKL-GKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHT-T-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHh-CCHHHHH
Confidence 48999999999999999995 5677888999999 69999999999999 999999999999999999886 5999999
Q ss_pred HHHHHH
Q 009385 491 ETFLEA 496 (536)
Q Consensus 491 e~feKA 496 (536)
+.|++|
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999986
No 55
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.77 E-value=5.1e-08 Score=89.76 Aligned_cols=103 Identities=12% Similarity=0.060 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHH
Q 009385 414 ADYFRTELLYQTGLAQEPND--PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWA 488 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn--~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eE 488 (536)
+.|..+...+.+.++.++.+ ..+++++|.++. ..|++++|+.+|++|+.+.|++ +.++.++|.++.. .|++++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~e 90 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTK 90 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHH
Confidence 45777777776666777777 566788998776 6899999999999999998774 4589999988876 579999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385 489 AEETFLEAISADPTNSYYAANYANFLWNTG 518 (536)
Q Consensus 489 Aee~feKALeLDPdNpeal~NyA~~L~elG 518 (536)
|+++|++|++++|.+...+.++|.++...|
T Consensus 91 A~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 91 ALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999444
No 56
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.76 E-value=7.2e-08 Score=109.29 Aligned_cols=107 Identities=11% Similarity=0.012 Sum_probs=100.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
|++++|++.|++++..+|....++.++|.++. ..|++++|+++|+++++++|+++.++..+|.++... |++++|+.++
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~-g~~~eA~~~l 106 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYR-NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA-GQYDEALVKA 106 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHH
Confidence 89999999999999999999999999998887 699999999999999999999999999999988764 6999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E~c 523 (536)
+++++.+|+++. +..+|.++...|+.+.+
T Consensus 107 ~~~l~~~P~~~~-~~~la~~l~~~g~~~~A 135 (765)
T PRK10049 107 KQLVSGAPDKAN-LLALAYVYKRAGRHWDE 135 (765)
T ss_pred HHHHHhCCCCHH-HHHHHHHHHHCCCHHHH
Confidence 999999999999 99999999999987544
No 57
>PLN02789 farnesyltranstransferase
Probab=98.76 E-value=5.7e-08 Score=100.59 Aligned_cols=103 Identities=8% Similarity=-0.005 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDY--DRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~--deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
++.+|+.++.++++.+|++..+|++.+.++. ..++. +++..+++++|++||.|..+|+..+.++... |++++|+++
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~-~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l-~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAE-KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL-GGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHH-HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-hhHHHHHHH
Confidence 6799999999999999999999999998776 46663 7889999999999999999999999988775 589999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385 493 FLEAISADPTNSYYAANYANFLWNTGG 519 (536)
Q Consensus 493 feKALeLDPdNpeal~NyA~~L~elGr 519 (536)
+.++|++||.|..++++.+.++.++|.
T Consensus 165 ~~~~I~~d~~N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 165 CHQLLEEDVRNNSAWNQRYFVITRSPL 191 (320)
T ss_pred HHHHHHHCCCchhHHHHHHHHHHhccc
Confidence 999999999999999999999988744
No 58
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.75 E-value=5.8e-08 Score=109.79 Aligned_cols=108 Identities=14% Similarity=-0.001 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009385 416 YFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLE 495 (536)
Q Consensus 416 yeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feK 495 (536)
..+++.-.+.....+|++++++.+||.+.. ..|++++|+..++++++++|++..++.+++.+|.+. +++++|...+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~-~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~-~~~eeA~~~~~~ 145 (694)
T PRK15179 68 PAAALPELLDYVRRYPHTELFQVLVARALE-AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ-QGIEAGRAEIEL 145 (694)
T ss_pred hHhhHHHHHHHHHhccccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 334444455556678999999999999988 699999999999999999999999999999999875 599999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385 496 AISADPTNSYYAANYANFLWNTGGEDTCFP 525 (536)
Q Consensus 496 ALeLDPdNpeal~NyA~~L~elGr~E~clp 525 (536)
+++.+|+++.+++.+|.+|.++|++|++..
T Consensus 146 ~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 146 YFSGGSSSAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred HhhcCCCCHHHHHHHHHHHHHhcchHHHHH
Confidence 999999999999999999999999876543
No 59
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.75 E-value=4.7e-08 Score=98.65 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
|+-+.+..+..+++..+|.+..++..+|.... ..|++.+|+..|++|++++|+|.++|+.+|.+|.+ .|++++|...|
T Consensus 80 G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~Gr~~~Ar~ay 157 (257)
T COG5010 80 GDADSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDEARRAY 157 (257)
T ss_pred ccccchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-ccChhHHHHHH
Confidence 67777888889999999999999988998887 68999999999999999999999999999998876 57999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGEDTCF 524 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E~cl 524 (536)
.+|+++.|+++.+..|+|..|.-.|+.+++-
T Consensus 158 ~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 158 RQALELAPNEPSIANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred HHHHHhccCCchhhhhHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999987654
No 60
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=3.2e-08 Score=108.29 Aligned_cols=106 Identities=18% Similarity=0.168 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
++|++|+.+|+.||..+|+|..+|+-||..+. ...+.++|+..|.|||++.|++..+++|||+.+... |.|+||.++|
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl-G~ykEA~~hl 521 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL-GAYKEAVKHL 521 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh-hhHHHHHHHH
Confidence 89999999999999999999999999998887 567899999999999999999999999999988875 6999999999
Q ss_pred HHHHHhCCCC----------HHHHHHHHHHHHHcCCCc
Q 009385 494 LEAISADPTN----------SYYAANYANFLWNTGGED 521 (536)
Q Consensus 494 eKALeLDPdN----------peal~NyA~~L~elGr~E 521 (536)
..||.+.+.+ -.++.+|=.+|.-+++.|
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 9999998761 236667778888888766
No 61
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.72 E-value=6.2e-08 Score=100.95 Aligned_cols=85 Identities=20% Similarity=0.228 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385 437 LANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWN 516 (536)
Q Consensus 437 L~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~e 516 (536)
+...|..++ ..|++++|+.+|++||+++|+++.++.++|.++... |++++|+.++++|++++|+++.+++++|.+|..
T Consensus 5 l~~~a~~a~-~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~-g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAF-VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKL-GNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 344566667 589999999999999999999999999999988875 699999999999999999999999999999999
Q ss_pred cCCCccc
Q 009385 517 TGGEDTC 523 (536)
Q Consensus 517 lGr~E~c 523 (536)
+|+++.+
T Consensus 83 lg~~~eA 89 (356)
T PLN03088 83 LEEYQTA 89 (356)
T ss_pred hCCHHHH
Confidence 9987544
No 62
>PLN02789 farnesyltranstransferase
Probab=98.71 E-value=1.7e-07 Score=97.04 Aligned_cols=107 Identities=12% Similarity=0.024 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--HHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH-DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRND--LWAAE 490 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G-D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD--~eEAe 490 (536)
+.+++|+..+.++|+++|++..+|...+.++. ..+ ++++|+.++.++++.+|++..+|+..+.++...+ + +++++
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~-~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~-~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLE-ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG-PDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHH-HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC-chhhHHHH
Confidence 58889999999999999999999999999888 466 6899999999999999999999999998876654 4 37889
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385 491 ETFLEAISADPTNSYYAANYANFLWNTGGEDT 522 (536)
Q Consensus 491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~ 522 (536)
.++++++++||+|..++.+.++++..+|+.++
T Consensus 129 ~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 129 EFTRKILSLDAKNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999997653
No 63
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.69 E-value=2e-07 Score=78.24 Aligned_cols=89 Identities=15% Similarity=0.135 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 009385 434 PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWAAEETFLEAISADPTN---SYYA 507 (536)
Q Consensus 434 ~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN---peal 507 (536)
+..++++|..+. ..|++++|+++|+++++.+|++ +.+++.+|.++... |++++|+.+|++++..+|++ +.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVL-KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ-GKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 467888998877 6899999999999999999988 57899999988875 69999999999999999986 5789
Q ss_pred HHHHHHHHHcCCCcccc
Q 009385 508 ANYANFLWNTGGEDTCF 524 (536)
Q Consensus 508 ~NyA~~L~elGr~E~cl 524 (536)
.++|.++..+|+.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~A~ 96 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAK 96 (119)
T ss_pred HHHHHHHHHhCChHHHH
Confidence 99999999999875543
No 64
>PRK11906 transcriptional regulator; Provisional
Probab=98.68 E-value=1.5e-07 Score=101.54 Aligned_cols=107 Identities=7% Similarity=-0.035 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 009385 414 ADYFRTELLYQTGL---AQEPNDPLLLANYAQFLYIV--------AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482 (536)
Q Consensus 414 gdyeeAee~YqKAL---eLdPdn~eAL~NLA~lL~e~--------~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~ 482 (536)
...++|..+|.+|+ +++|+++.+|..+|..++.. ..+..+|.+..++|+++||+|+.++..+|.+++..
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 47788999999999 99999999999988765432 23577899999999999999999999999988875
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 483 RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 483 ~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
++++.|...|++|+.++|+.+.+++.+|+++...|+.+
T Consensus 352 -~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~ 389 (458)
T PRK11906 352 -GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE 389 (458)
T ss_pred -cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Confidence 57999999999999999999999999999999999864
No 65
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.1e-07 Score=102.43 Aligned_cols=111 Identities=13% Similarity=0.124 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
++.++|+.+|++||++||+...+|.-+|-=+. .+++...|+..|++|++++|.|-.||+.||..+-. .+-+.=|+-||
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv-EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~YaLyYf 421 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV-EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHFYALYYF 421 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH-HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchHHHHHHH
Confidence 68999999999999999999999999997666 58999999999999999999999999999997755 45789999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCC---ccccCC
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGE---DTCFPL 526 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~---E~clpl 526 (536)
++|+++-|+++..+..+|.+|-.+++. .+||+.
T Consensus 422 qkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 422 QKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999999999999999999975 456653
No 66
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.67 E-value=1.9e-07 Score=90.35 Aligned_cols=98 Identities=18% Similarity=0.226 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--
Q 009385 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV---------AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR-- 483 (536)
Q Consensus 415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~---------~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~-- 483 (536)
-|+.|.+.|+.++..||.|++.+++.|.+|.+. ..-+++|+.-|++||.++|+..++++++|.++..+.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 378899999999999999999999999876642 124678999999999999999999999999886542
Q ss_pred --------CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385 484 --------NDLWAAEETFLEAISADPTNSYYAANYAN 512 (536)
Q Consensus 484 --------GD~eEAee~feKALeLDPdNpeal~NyA~ 512 (536)
..|++|..+|++|+..+|+|..|...+-.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 13889999999999999999988665543
No 67
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.64 E-value=5.8e-08 Score=75.84 Aligned_cols=55 Identities=27% Similarity=0.559 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA 469 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda 469 (536)
|++++|+..|+++++.+|+++.+++.+|.+++ .+|++++|+.+|+++++++|+|+
T Consensus 11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 89999999999999999999999999999988 69999999999999999999986
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=7.9e-08 Score=104.06 Aligned_cols=108 Identities=16% Similarity=0.211 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
|++-.|...|.++|+++|.+..+|.-+|.+|. ..++-++-.++|.+|..+||+|+++|+..|.+++.. +++++|+.-|
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~-d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL-~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYA-DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL-QQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchHHHHHHHHHh-hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH-HHHHHHHHHH
Confidence 78999999999999999999999999997766 688899999999999999999999999999988765 5899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E~c 523 (536)
++|++++|.|...+..+|.+++++++.++|
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~ 447 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHKIAES 447 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999976543
No 69
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.62 E-value=2.6e-07 Score=85.71 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 009385 431 PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYA 507 (536)
Q Consensus 431 Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal 507 (536)
|....+++++|..+. ..|++++|..+|+++++++|+. +.++.++|.++.. .|++++|+.+|++|++++|+++..+
T Consensus 32 ~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 32 AKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred hhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHH
Confidence 456677889998777 6899999999999999988764 4689999998876 4799999999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 009385 508 ANYANFLWNTGGE 520 (536)
Q Consensus 508 ~NyA~~L~elGr~ 520 (536)
.++|.++...|+.
T Consensus 110 ~~lg~~~~~~g~~ 122 (172)
T PRK02603 110 NNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHHcCCh
Confidence 9999999998874
No 70
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.60 E-value=5.2e-07 Score=91.24 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHH
Q 009385 414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLW 487 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~e 487 (536)
++|++|+..|++.++.+|++ +.+++.+|.+++ ..|++++|..+|++++...|++ +++++.+|.++.. .|+++
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g~~~ 234 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KGDTA 234 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cCCHH
Confidence 68999999999999999998 579999999988 6999999999999999999885 7889999998876 47999
Q ss_pred HHHHHHHHHHHhCCCCHHH
Q 009385 488 AAEETFLEAISADPTNSYY 506 (536)
Q Consensus 488 EAee~feKALeLDPdNpea 506 (536)
+|+.+|+++++..|++..+
T Consensus 235 ~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 235 KAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHHCcCCHHH
Confidence 9999999999999998865
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.60 E-value=2.4e-07 Score=92.96 Aligned_cols=98 Identities=23% Similarity=0.164 Sum_probs=74.4
Q ss_pred HhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH--
Q 009385 428 AQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSY-- 505 (536)
Q Consensus 428 eLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpe-- 505 (536)
..+|++..++..+|.++. ..|++++|+..|+++++++|+++.++..+|.++++. |++++|+.++++++...|.++.
T Consensus 108 ~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~-g~~~eA~~~l~~~l~~~~~~~~~~ 185 (355)
T cd05804 108 PENPDYWYLLGMLAFGLE-EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ-GRFKEGIAFMESWRDTWDCSSMLR 185 (355)
T ss_pred cCCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHhhhhccCCCcchh
Confidence 344555555555665555 578889999999999999999988888888888874 6899999999999988875443
Q ss_pred --HHHHHHHHHHHcCCCccccCCC
Q 009385 506 --YAANYANFLWNTGGEDTCFPLS 527 (536)
Q Consensus 506 --al~NyA~~L~elGr~E~clpl~ 527 (536)
.+..+|.++...|+.++++.+.
T Consensus 186 ~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 186 GHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3457888888888888776544
No 72
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.58 E-value=1.6e-07 Score=73.50 Aligned_cols=63 Identities=27% Similarity=0.341 Sum_probs=42.3
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009385 448 AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYA 511 (536)
Q Consensus 448 ~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA 511 (536)
.|++++|+++|++++..+|+|.+++..+|.++... |++++|+.++++++..+|+++.++.-++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQ-GQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 56777777777777777777777777777766654 5677777777777777777666555444
No 73
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.58 E-value=1.1e-07 Score=74.69 Aligned_cols=52 Identities=23% Similarity=0.408 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCC
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH-DYDRAEEYFKRAIAVEP 466 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G-D~deAEe~FeKALeLDP 466 (536)
+++++|+.+|.+||+++|+++.+++++|.+++ ..| ++++|+++|++||+++|
T Consensus 17 ~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 17 GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence 89999999999999999999999999999887 688 79999999999999998
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.57 E-value=2.8e-07 Score=92.54 Aligned_cols=88 Identities=17% Similarity=0.177 Sum_probs=76.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE----SFSKYASFLWRVRNDLWA 488 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddae----AL~nLG~~L~e~~GD~eE 488 (536)
.|++++|+..|+++++++|+++.++..+|.+++ ..|++++|+.+|++++...|.++. .+..+|.++.. .|++++
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~-~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~-~G~~~~ 204 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLE-MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE-RGDYEA 204 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH-CCCHHH
Confidence 388999999999999999999999999999988 589999999999999999885543 34578877765 579999
Q ss_pred HHHHHHHHHHhCCC
Q 009385 489 AEETFLEAISADPT 502 (536)
Q Consensus 489 Aee~feKALeLDPd 502 (536)
|+.+|++++...|.
T Consensus 205 A~~~~~~~~~~~~~ 218 (355)
T cd05804 205 ALAIYDTHIAPSAE 218 (355)
T ss_pred HHHHHHHHhccccC
Confidence 99999999888773
No 75
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.57 E-value=1.5e-07 Score=73.68 Aligned_cols=63 Identities=27% Similarity=0.370 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS 477 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~ 477 (536)
|++++|+..|++++..+|+|..+++.+|.++. ..|++++|+..+++++..+|+++.++..++.
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 89999999999999999999999999999988 6999999999999999999999888877664
No 76
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=6.2e-07 Score=96.96 Aligned_cols=108 Identities=20% Similarity=0.167 Sum_probs=100.6
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
.++.+++|+..++..++..|+|+..+-..+.++. ..++.++|.+.|++++.++|+.+....+||..|.. .|++.+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHHH
Confidence 3478999999999999999999999999999988 68999999999999999999999999999999987 469999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 492 TFLEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 492 ~feKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
++++.+.-+|+||..|..+|..+-.+|+..
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 999999999999999999999999999753
No 77
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.55 E-value=4.5e-07 Score=71.86 Aligned_cols=67 Identities=25% Similarity=0.350 Sum_probs=53.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009385 442 QFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANY 510 (536)
Q Consensus 442 ~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~Ny 510 (536)
.++. ..+++++|++++++++.++|+++.++..+|.++... |++.+|.+.|+++++.+|+++.+....
T Consensus 3 ~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYL-QQEDYEEALEVLERALELDPDDPELWLQRARCLFQL-GRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHH-hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh-ccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 3444 578888888888888888888888888888888765 588888888888888888888765443
No 78
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.55 E-value=4.9e-07 Score=99.23 Aligned_cols=118 Identities=14% Similarity=0.039 Sum_probs=94.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHh
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV-------AHDYDRAEEYFKRAIAV--EPPDAESFSKYASFLWRV 482 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~-------~GD~deAEe~FeKALeL--DPddaeAL~nLG~~L~e~ 482 (536)
+.+++.+|+.+|++|+++||+++.+|..++.++... ..+.++|.+..++++.+ +|.++.+|..+|..+..
T Consensus 354 ~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~- 432 (517)
T PRK10153 354 DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV- 432 (517)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-
Confidence 346788999999999999999999999888755421 12356777778887774 88889999999876654
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-------ccccCCCCCCC
Q 009385 483 RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE-------DTCFPLSSPDS 531 (536)
Q Consensus 483 ~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~-------E~clpl~~~~~ 531 (536)
.|++++|+.+|++|++++| +..++..+|.++...|+. ++++-+++.++
T Consensus 433 ~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 433 KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 5799999999999999999 578899999999999985 45555555543
No 79
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.54 E-value=2.9e-07 Score=99.31 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=64.1
Q ss_pred hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009385 429 QEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAES---FSKYASFLWRVRNDLWAAEETFLEAISA 499 (536)
Q Consensus 429 LdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeA---L~nLG~~L~e~~GD~eEAee~feKALeL 499 (536)
.+|+++.+|+|+|.+|+ ..|+|++|+.+|++||+++|+++++ |+|+|.+|..+ |++++|+++|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L-Gr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR-EEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 48999999999999988 6999999999999999999999965 99999988875 6999999999999998
No 80
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.51 E-value=1.1e-06 Score=100.03 Aligned_cols=106 Identities=19% Similarity=0.261 Sum_probs=99.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
.|++++|+..+..+|+++|.++.+|+.||.++. .+||.++|...+..|--++|.|.+-|..++...-+ .|++.+|.-|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE-qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYE-QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccHHHHHHH
Confidence 399999999999999999999999999998876 69999999999999999999999999999986655 5689999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385 493 FLEAISADPTNSYYAANYANFLWNTGGE 520 (536)
Q Consensus 493 feKALeLDPdNpeal~NyA~~L~elGr~ 520 (536)
|.+||+++|.|....+..+.+|-++|+.
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~ 257 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDL 257 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChH
Confidence 9999999999999999999999999975
No 81
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.51 E-value=6.5e-07 Score=94.14 Aligned_cols=107 Identities=13% Similarity=0.109 Sum_probs=89.7
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCC
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLL----LANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA--ESFSKYASFLWRVRND 485 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eA----L~NLA~lL~e~~GD~deAEe~FeKALeLDPdda--eAL~nLG~~L~e~~GD 485 (536)
..|++++|+..++++++..|++... +..+. .. ..++.+++++.++++++.+|+|+ ..+..||.+++.. |+
T Consensus 275 ~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~--~l-~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~-~~ 350 (409)
T TIGR00540 275 DCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIP--RL-KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH-GE 350 (409)
T ss_pred HCCChHHHHHHHHHHHhhCCCcccchhHHHHHhh--hc-CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc-cc
Confidence 3489999999999999999999853 32222 12 35788999999999999999999 8999999999874 69
Q ss_pred HHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385 486 LWAAEETFL--EAISADPTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 486 ~eEAee~fe--KALeLDPdNpeal~NyA~~L~elGr~E~c 523 (536)
+++|+++|+ ++++.+|++.. +..+|.+++..|+.+++
T Consensus 351 ~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 351 FIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEA 389 (409)
T ss_pred HHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence 999999999 68889998776 45999999999986543
No 82
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.50 E-value=7.1e-07 Score=102.82 Aligned_cols=105 Identities=12% Similarity=0.030 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
|++..|+..|+++++.+|+++.+...++.++. ..|++++|+.++++++.-+|.+..++..+|.++.. .|++++|+++|
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~-~gdyd~Aiely 125 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN-EKRWDQALALW 125 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 55555555555555555555433224444433 34555555555555552222222222222434333 24555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGE 520 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~ 520 (536)
+++++.+|+|+.++..++.++.+.|+.
T Consensus 126 ~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 126 QSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 555555555555555555555555544
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=6e-07 Score=97.88 Aligned_cols=99 Identities=18% Similarity=0.278 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
|+|+.|+.+|..||.++|.|..+|.|....+. ..|+|++|.+.-.+.++++|+.+.+|..+|..+.-. |+|++|+..|
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a-~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l-g~~~eA~~ay 93 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYA-SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL-GDYEEAILAY 93 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHH-HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc-ccHHHHHHHH
Confidence 89999999999999999999999999987766 799999999999999999999999999999988764 7999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHH
Q 009385 494 LEAISADPTNSYYAANYANFL 514 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L 514 (536)
.+.|+.||+|...+.+++.+.
T Consensus 94 ~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 94 SEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHhhcCCchHHHHHhHHHhh
Confidence 999999999999988888876
No 84
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=6.1e-07 Score=98.40 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=75.4
Q ss_pred cCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Q 009385 413 YADYFRTELLYQTGLAQEP-------NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRND 485 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdP-------dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD 485 (536)
++.|.+|..+|++++..-+ .-...+.|+|-++. ..+.+++|+.+|++||.+.|.|+.++..+|.++.. .|+
T Consensus 427 ~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R-kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l-lgn 504 (611)
T KOG1173|consen 427 YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR-KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL-LGN 504 (611)
T ss_pred HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH-HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH-hcC
Confidence 4788888888888883321 12345778887766 67888888888888888888888888888877665 468
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385 486 LWAAEETFLEAISADPTNSYYAANYANFLWN 516 (536)
Q Consensus 486 ~eEAee~feKALeLDPdNpeal~NyA~~L~e 516 (536)
++.|+++|.+||.++|+|..+-.-|+.++-.
T Consensus 505 ld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 505 LDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred hHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 8888888888888888887665556655543
No 85
>PRK11906 transcriptional regulator; Provisional
Probab=98.43 E-value=1.1e-06 Score=94.87 Aligned_cols=92 Identities=11% Similarity=-0.021 Sum_probs=84.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
..+..+|.++.++|+++||+|+.++..+|.++. ..++++.|...|++|+.++|+.+.+++.+|.++.. .|+.++|.+.
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~-~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~ 394 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITG-LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARIC 394 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHH
Confidence 467889999999999999999999999999888 57889999999999999999999999999998876 5799999999
Q ss_pred HHHHHHhCCCCHHH
Q 009385 493 FLEAISADPTNSYY 506 (536)
Q Consensus 493 feKALeLDPdNpea 506 (536)
+++|++++|.-..+
T Consensus 395 i~~alrLsP~~~~~ 408 (458)
T PRK11906 395 IDKSLQLEPRRRKA 408 (458)
T ss_pred HHHHhccCchhhHH
Confidence 99999999986543
No 86
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.3e-06 Score=87.94 Aligned_cols=92 Identities=20% Similarity=0.269 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA--HDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~--GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
+++..|...|.+|+++.|+|++.+..||.+++... .+-.+|...|++||+.||+|..+++.||..+++. |+|.+|..
T Consensus 170 ~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~-g~~~~A~~ 248 (287)
T COG4235 170 GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQ-GDYAEAAA 248 (287)
T ss_pred cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc-ccHHHHHH
Confidence 79999999999999999999999999999887433 3578999999999999999999999999988875 69999999
Q ss_pred HHHHHHHhCCCCHHH
Q 009385 492 TFLEAISADPTNSYY 506 (536)
Q Consensus 492 ~feKALeLDPdNpea 506 (536)
.+++-++..|.+...
T Consensus 249 ~Wq~lL~~lp~~~~r 263 (287)
T COG4235 249 AWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHhcCCCCCch
Confidence 999999998877654
No 87
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.40 E-value=1.5e-06 Score=68.82 Aligned_cols=62 Identities=27% Similarity=0.429 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYA 476 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG 476 (536)
+++++|+.++++++.++|+++.++..+|.+++ ..|++++|.+.|+++++.+|+++.+....+
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 79999999999999999999999999999988 699999999999999999999999876654
No 88
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.38 E-value=3.5e-06 Score=90.03 Aligned_cols=105 Identities=17% Similarity=0.168 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
++++.|+..|++..+.+|+ +...+|.++. ..++..+|.+.+.++|..+|++++.+...+.+|.. +++++.|+++.
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~iA 257 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEIA 257 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 6899999999999999986 3444677776 47888999999999999999999999999999887 56999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E~c 523 (536)
++|+++.|++...++.|+.+|..+|++|.+
T Consensus 258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 258 KKAVELSPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999999998754
No 89
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.37 E-value=3.8e-06 Score=92.36 Aligned_cols=90 Identities=14% Similarity=0.053 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQ--EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 414 gdyeeAee~YqKALeL--dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
.+..++.+..++++.+ +|.++.++..+|.... ..|++++|+.+|++|++++| +..+|..+|.++.. .|++++|++
T Consensus 398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~ 474 (517)
T PRK10153 398 KQLAALSTELDNIVALPELNVLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAAD 474 (517)
T ss_pred HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHH
Confidence 3566788888887775 8888999988887655 68999999999999999999 58999999997765 679999999
Q ss_pred HHHHHHHhCCCCHHH
Q 009385 492 TFLEAISADPTNSYY 506 (536)
Q Consensus 492 ~feKALeLDPdNpea 506 (536)
.|++|++++|.++.+
T Consensus 475 ~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 475 AYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHhcCCCCchH
Confidence 999999999999864
No 90
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.36 E-value=3.5e-06 Score=97.22 Aligned_cols=106 Identities=14% Similarity=0.082 Sum_probs=92.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
.+++++|+++|+++++.+|+++.++..++.++. ..++.++|++.+++++..+|.+... ..++.++.. .++..+|++.
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~-~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA-TDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh-cchHHHHHHH
Confidence 389999999999999999999999999877666 6899999999999999999997776 445555443 3567779999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 493 FLEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 493 feKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
|+++++.+|++.+++..|..++...|-..
T Consensus 192 ~ekll~~~P~n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 192 SSEAVRLAPTSEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999999999999654
No 91
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.1e-06 Score=93.06 Aligned_cols=65 Identities=20% Similarity=0.232 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFL 479 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L 479 (536)
+.+++|+.+|++||.+.|.++.++..+|.++. ..|+++.|+.+|.+||.++|+|..+-..|+..+
T Consensus 469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~-llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPKDASTHASIGYIYH-LLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHH-HhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 68889999999999999999999999997766 689999999999999999999977766666443
No 92
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.35 E-value=3.9e-06 Score=88.37 Aligned_cols=107 Identities=18% Similarity=0.130 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA-ESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda-eAL~nLG~~L~e~~GD~eEAee~ 492 (536)
|++.+|++...++.+..|+....+.-.|.+.. .+|++++|.++|+++++..|++. .+...++.++.. .|++++|.+.
T Consensus 98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~-~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~-~~~~~~Al~~ 175 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQ-QRGDEARANQHLEEAAELAGNDNILVEIARTRILLA-QNELHAARHG 175 (409)
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH-CCCHHHHHHH
Confidence 77777777777777777776666666666655 46777777777777777777775 455555666655 3577777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385 493 FLEAISADPTNSYYAANYANFLWNTGGEDT 522 (536)
Q Consensus 493 feKALeLDPdNpeal~NyA~~L~elGr~E~ 522 (536)
+++.++..|+++.++..++.++...|+.+.
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~ 205 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQA 205 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 777777777777777777777777777653
No 93
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=4.2e-06 Score=89.03 Aligned_cols=98 Identities=15% Similarity=0.240 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPN----D-----------PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASF 478 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPd----n-----------~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~ 478 (536)
++|..|...|++|+..=.. + ..++.|+|..+. ..++|.+|+.+..++|+++|+|..|++.-|.+
T Consensus 222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A 300 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKALYRRGQA 300 (397)
T ss_pred chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 7999999999998876331 1 246889997665 79999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385 479 LWRVRNDLWAAEETFLEAISADPTNSYYAANYANF 513 (536)
Q Consensus 479 L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~ 513 (536)
+... |+|+.|+..|++|++++|+|-.+...+..+
T Consensus 301 ~l~~-~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 301 LLAL-GEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHhh-ccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9875 699999999999999999998876555544
No 94
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=3e-06 Score=91.56 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=99.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
|++++|...|+.||..|....++++|+|..+. .+|++++|+.+|.+.-.+--++++++..++.++-. ..+...|+++|
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~klh~il~nn~evl~qianiye~-led~aqaie~~ 581 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL-LEDPAQAIELL 581 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhCHHHHHHHH
Confidence 89999999999999999999999999997655 79999999999999999999999999999997754 56999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E~c 523 (536)
.+|..+-|++|.++..+|.+|-+.|+.-.+
T Consensus 582 ~q~~slip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 582 MQANSLIPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HHhcccCCCCHHHHHHHHHHhhcccchhhh
Confidence 999999999999999999999888875433
No 95
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=1.1e-05 Score=82.16 Aligned_cols=127 Identities=16% Similarity=0.216 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHhccccccccccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC
Q 009385 370 EELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH 449 (536)
Q Consensus 370 ~EvaLwnsmvaEA~~mQ~~d~~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G 449 (536)
+-+.+|++.+++- -.|..+.+|-++.+.|. |..-+|++....-++.-++|.++|..++.+|. ..|
T Consensus 104 ~A~e~y~~lL~dd--------pt~~v~~KRKlAilka~------GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~-~~~ 168 (289)
T KOG3060|consen 104 EAIEYYESLLEDD--------PTDTVIRKRKLAILKAQ------GKNLEAIKELNEYLDKFMNDQEAWHELAEIYL-SEG 168 (289)
T ss_pred hHHHHHHHHhccC--------cchhHHHHHHHHHHHHc------CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hHh
Confidence 4445666655543 34455555555555443 67779999999999999999999999999988 689
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009385 450 DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRN--DLWAAEETFLEAISADPTNSYYAANYA 511 (536)
Q Consensus 450 D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~G--D~eEAee~feKALeLDPdNpeal~NyA 511 (536)
+|++|.-||++.+-+.|.++..+..||.++|-.+| +++-|.+||.+|++++|.|...++.+.
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 99999999999999999999999999999987664 789999999999999998877665543
No 96
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=2.1e-06 Score=89.94 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWAAE 490 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eEAe 490 (536)
++.+-|..+|++.|.+.-.+++++.|+|..+. ..+.+|-+..+|++|+...-++ +++|+|+|.+.... ||+.-|.
T Consensus 338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~-yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~i-GD~nlA~ 415 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCL-YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTI-GDFNLAK 415 (478)
T ss_pred CChHHHHHHHHHHHHhcCCChHHHhhHHHHHH-hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEec-cchHHHH
Confidence 57778888888888888888889999986555 6788999999999998875432 57899999877654 6999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385 491 ETFLEAISADPTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~c 523 (536)
.+|+-|+..||++.+++.|+|.+-.+.|+.+.+
T Consensus 416 rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 416 RCFRLALTSDAQHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred HHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence 999999999999999999999999999987654
No 97
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.29 E-value=5.2e-06 Score=87.33 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=90.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
.|+.++|....+++++ .|.|+.+..-|+.+ ..++.+++.+.+++.++.+|+|+..+..+|.++... +++++|+++
T Consensus 276 ~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l---~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~-~~~~~A~~~ 350 (398)
T PRK10747 276 CDDHDTAQQIILDGLK-RQYDERLVLLIPRL---KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH-GEWQEASLA 350 (398)
T ss_pred CCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc---cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-CCHHHHHHH
Confidence 3899999999999999 55577766667754 258999999999999999999999999999988875 699999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385 493 FLEAISADPTNSYYAANYANFLWNTGGEDT 522 (536)
Q Consensus 493 feKALeLDPdNpeal~NyA~~L~elGr~E~ 522 (536)
|+++++++|++.. +..++.++.+.|+.++
T Consensus 351 le~al~~~P~~~~-~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 351 FRAALKQRPDAYD-YAWLADALDRLHKPEE 379 (398)
T ss_pred HHHHHhcCCCHHH-HHHHHHHHHHcCCHHH
Confidence 9999999999865 4579999999998654
No 98
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.24 E-value=9.9e-07 Score=72.65 Aligned_cols=76 Identities=17% Similarity=0.317 Sum_probs=66.6
Q ss_pred hCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385 448 AHDYDRAEEYFKRAIAVEPP--DAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFP 525 (536)
Q Consensus 448 ~GD~deAEe~FeKALeLDPd--daeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~clp 525 (536)
.|++++|+.+|+++++.+|. +...++.+|.+++.. |++++|+.++++ ++.+|.++..++.+|.++..+|+++++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~-~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ-GKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT-THHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC-CCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58999999999999999995 566778889999985 699999999999 88999999999999999999999987754
No 99
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.24 E-value=4.3e-06 Score=94.34 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH--
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE-- 491 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee-- 491 (536)
++.++|.-+..+|-.++|-.+..|+..|..+. ..|.+++|.+.|..|+.+||+|+..+..+|.++.+. |+..-|++
T Consensus 664 ~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~-~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~-G~~~la~~~~ 741 (799)
T KOG4162|consen 664 GNDDEARSCLLEASKIDPLSASVYYLRGLLLE-VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL-GSPRLAEKRS 741 (799)
T ss_pred CCchHHHHHHHHHHhcchhhHHHHHHhhHHHH-HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-CCcchHHHHH
Confidence 45555666666666666666666666665544 456666666666666666666666666666655543 34444444
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385 492 TFLEAISADPTNSYYAANYANFLWNTGG 519 (536)
Q Consensus 492 ~feKALeLDPdNpeal~NyA~~L~elGr 519 (536)
....|+++||.|+++|+++|.++...|+
T Consensus 742 ~L~dalr~dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 742 LLSDALRLDPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 6666666666666666666666666665
No 100
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.24 E-value=1.7e-05 Score=71.77 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHH
Q 009385 414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLW 487 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~e 487 (536)
++...+...+++.+..+|+. ..+.+.+|.+++ ..|++++|.+.|++++...|++ ..+...+|.++... |+++
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~-~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~-~~~d 102 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAY-EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ-GQYD 102 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHH
Confidence 78888888999999999998 566777888887 5899999999999999988776 35778889888764 6999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385 488 AAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCF 524 (536)
Q Consensus 488 EAee~feKALeLDPdNpeal~NyA~~L~elGr~E~cl 524 (536)
+|+..+++ +.-.+-.+.++...|.++...|+.+++.
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~ 138 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEAR 138 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHH
Confidence 99999966 3444555667888999999999887653
No 101
>PRK15331 chaperone protein SicA; Provisional
Probab=98.19 E-value=1.4e-05 Score=76.40 Aligned_cols=113 Identities=9% Similarity=0.060 Sum_probs=94.7
Q ss_pred ccccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 009385 390 ESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA 469 (536)
Q Consensus 390 ~~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda 469 (536)
..+.++++..+-.... .+ -..|++++|+..|+-....||.|+..+.+||.++. ..++|++|+..|-.|..++++|+
T Consensus 30 ~gis~~~le~iY~~Ay-~~--y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 30 HGIPQDMMDGLYAHAY-EF--YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDY 105 (165)
T ss_pred hCCCHHHHHHHHHHHH-HH--HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCC
Confidence 3566777775555331 11 13399999999999999999999999999997766 69999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 009385 470 ESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAA 508 (536)
Q Consensus 470 eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~ 508 (536)
...+..|.++... |+.++|+.+|+.|+. .|.+.....
T Consensus 106 ~p~f~agqC~l~l-~~~~~A~~~f~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 106 RPVFFTGQCQLLM-RKAAKARQCFELVNE-RTEDESLRA 142 (165)
T ss_pred CccchHHHHHHHh-CCHHHHHHHHHHHHh-CcchHHHHH
Confidence 9999999988875 699999999999999 587776543
No 102
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.19 E-value=9.1e-06 Score=91.80 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=84.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEE--YFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA 489 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe--~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA 489 (536)
..+.+.+|.+.|..|+.+||+++.+...+|.++. ..|+-.-|+. .+..|+++||.|+++|+++|.++.. .||.++|
T Consensus 696 ~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~Gd~~~A 773 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALDPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-LGDSKQA 773 (799)
T ss_pred HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-ccchHHH
Confidence 4489999999999999999999999999999887 5888777888 9999999999999999999998865 5799999
Q ss_pred HHHHHHHHHhCCCCHH
Q 009385 490 EETFLEAISADPTNSY 505 (536)
Q Consensus 490 ee~feKALeLDPdNpe 505 (536)
-++|+.|+++++.+|.
T Consensus 774 aecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 774 AECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHhhccCCCc
Confidence 9999999999999874
No 103
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.18 E-value=1.3e-05 Score=72.56 Aligned_cols=86 Identities=24% Similarity=0.177 Sum_probs=73.1
Q ss_pred cccCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcC
Q 009385 411 DDYADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP---DAESFSKYASFLWRVRN 484 (536)
Q Consensus 411 Dd~gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd---daeAL~nLG~~L~e~~G 484 (536)
|..|+.++|+.+|++|++...+. ..++.++|..+. ..|++++|+..+++++.-.|+ +..+...++..++.. |
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~-g 89 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL-G 89 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC-C
Confidence 35589999999999999986555 468888998887 689999999999999998888 777888888888875 6
Q ss_pred CHHHHHHHHHHHHH
Q 009385 485 DLWAAEETFLEAIS 498 (536)
Q Consensus 485 D~eEAee~feKALe 498 (536)
++++|+..+..++.
T Consensus 90 r~~eAl~~~l~~la 103 (120)
T PF12688_consen 90 RPKEALEWLLEALA 103 (120)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998887
No 104
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=1.7e-05 Score=80.65 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
+.+++|+++|...|+-||.|..++--.-.++- .+|.--+|++.+..-++.-|+|.++|..++.++... |+|++|.-+|
T Consensus 100 ~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~-~~f~kA~fCl 177 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE-GDFEKAAFCL 177 (289)
T ss_pred hchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH-hHHHHHHHHH
Confidence 79999999999999999999988875333443 688888999999999999999999999999988875 6999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
++.+-+.|.|+.++..||.+++-.|..+
T Consensus 178 EE~ll~~P~n~l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 178 EELLLIQPFNPLYFQRLAEVLYTQGGAE 205 (289)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999753
No 105
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.18 E-value=1.8e-05 Score=83.29 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLA-NYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~-NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
|++++|..+|++|.+.+|++..+.. ..+.++. ..|++++|.+.++++++.+|+|+.++..++.++... ||+++|++.
T Consensus 132 g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~-gdw~~a~~~ 209 (398)
T PRK10747 132 GDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT-GAWSSLLDI 209 (398)
T ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HhHHHHHHH
Confidence 5555555555555555555533221 1233333 355555555555555555555555555555544443 355555555
Q ss_pred HHHHHHhCCCCHH
Q 009385 493 FLEAISADPTNSY 505 (536)
Q Consensus 493 feKALeLDPdNpe 505 (536)
+.+..+..+.++.
T Consensus 210 l~~l~k~~~~~~~ 222 (398)
T PRK10747 210 LPSMAKAHVGDEE 222 (398)
T ss_pred HHHHHHcCCCCHH
Confidence 5555555544443
No 106
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.16 E-value=5.6e-06 Score=87.30 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
|.|++|+.||.+++..+|.|+..+.|.|.+|. ..+.+..|+.....||.+|-.+..+|...|..-..+ |...||.+-+
T Consensus 111 gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L-g~~~EAKkD~ 188 (536)
T KOG4648|consen 111 GKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL-GNNMEAKKDC 188 (536)
T ss_pred cchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH-hhHHHHHHhH
Confidence 79999999999999999999999999998877 689999999999999999999999999998876665 5899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHH
Q 009385 494 LEAISADPTNSYYAANYANF 513 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~ 513 (536)
+.+|+++|++-+..-.|+.+
T Consensus 189 E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 189 ETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHhhCcccHHHHHHHHHh
Confidence 99999999998876666654
No 107
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.16 E-value=5.1e-06 Score=91.32 Aligned_cols=112 Identities=25% Similarity=0.314 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQ--------EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE-----PPD---AESFSKYAS 477 (536)
Q Consensus 414 gdyeeAee~YqKALeL--------dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD-----Pdd---aeAL~nLG~ 477 (536)
++|.+|+..|++||.+ +|.-+.++.|||.+|+ ..|++++|+.++++|+++- .++ +..+.+++.
T Consensus 255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 8999999999999987 3445578999999888 6999999999999999874 233 345677776
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCCccccCCC
Q 009385 478 FLWRVRNDLWAAEETFLEAISA-----DPTN---SYYAANYANFLWNTGGEDTCFPLS 527 (536)
Q Consensus 478 ~L~e~~GD~eEAee~feKALeL-----DPdN---peal~NyA~~L~elGr~E~clpl~ 527 (536)
++.. ++++++|+.+|++++++ .++| +.++.|||.+|..+|+++++.++.
T Consensus 334 ~~~~-~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~ 390 (508)
T KOG1840|consen 334 ILQS-MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELY 390 (508)
T ss_pred HHHH-hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 6654 57999999999999986 3444 456889999999999987766543
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=4.2e-06 Score=94.05 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=97.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
++|.++.+++++.++++|-....|+++|.+.. ..+++..|.++|.+.+.++|+|.++|+|++..+... ++..+|-..+
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~AL-qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~-~~k~ra~~~l 576 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAAL-QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL-KKKKRAFRKL 576 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHH-HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH-hhhHHHHHHH
Confidence 68999999999999999999999999997766 589999999999999999999999999999887765 5889999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGEDTCF 524 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E~cl 524 (536)
.+|++-+-++..++-||-.+..+.|..|.++
T Consensus 577 ~EAlKcn~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 577 KEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence 9999999888899999999999999766443
No 109
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.14 E-value=2e-05 Score=79.80 Aligned_cols=92 Identities=13% Similarity=0.027 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHH
Q 009385 433 DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWAAEETFLEAISADPTN---SYY 506 (536)
Q Consensus 433 n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN---pea 506 (536)
+....++.|..+....|+|++|+..|++.++..|++ +.+++.+|.+++. .|++++|+.+|+++++..|++ +++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 457777777655435699999999999999999999 5899999999887 469999999999999998885 567
Q ss_pred HHHHHHHHHHcCCCccccC
Q 009385 507 AANYANFLWNTGGEDTCFP 525 (536)
Q Consensus 507 l~NyA~~L~elGr~E~clp 525 (536)
++.+|.++..+|+.+++..
T Consensus 220 l~klg~~~~~~g~~~~A~~ 238 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKA 238 (263)
T ss_pred HHHHHHHHHHcCCHHHHHH
Confidence 8899999999998765543
No 110
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.14 E-value=7.1e-06 Score=94.44 Aligned_cols=129 Identities=21% Similarity=0.307 Sum_probs=92.7
Q ss_pred cccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--
Q 009385 391 SLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD-- 468 (536)
Q Consensus 391 ~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd-- 468 (536)
.+||..+..++......+...+...+..+...+.+|...+|+||.++..||.-+| ..|||..+...++.|+...-+.
T Consensus 227 qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy-fK~dy~~v~~la~~ai~~t~~~~~ 305 (1018)
T KOG2002|consen 227 QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFY-FKKDYERVWHLAEHAIKNTENKSI 305 (1018)
T ss_pred hcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHh-hcccHHHHHHHHHHHHHhhhhhHH
Confidence 5677777777776555555556678888888888888888888888888887766 5777777777777777655333
Q ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCc
Q 009385 469 -AESFSKYASFLWRVRNDLWAAEETFLEAISADPTN-SYYAANYANFLWNTGGED 521 (536)
Q Consensus 469 -aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN-peal~NyA~~L~elGr~E 521 (536)
++.++++|..+.. .||+++|..||.++++.+|++ ...++.+|..+...|+.+
T Consensus 306 ~aes~Y~~gRs~Ha-~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle 359 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHA-QGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLE 359 (1018)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHH
Confidence 3457777776544 467777777777777777777 555667777777777654
No 111
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.13 E-value=3.1e-06 Score=68.18 Aligned_cols=66 Identities=21% Similarity=0.347 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009385 432 NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE----PPD---AESFSKYASFLWRVRNDLWAAEETFLEAISA 499 (536)
Q Consensus 432 dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD----Pdd---aeAL~nLG~~L~e~~GD~eEAee~feKALeL 499 (536)
+-..++.++|.+++ ..|++++|+++|++|+++. +++ +.+++++|.++.. .|++++|+++|++|+++
T Consensus 3 ~~a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 34578999999888 6999999999999999762 232 5678999998876 47999999999999986
No 112
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=1.1e-05 Score=83.38 Aligned_cols=84 Identities=21% Similarity=0.241 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385 437 LANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWN 516 (536)
Q Consensus 437 L~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~e 516 (536)
+-+=|.=++ ..++|.+|+..|.+||+++|.|+-.|.+.|.+|..+ |.++.|++-.++||.+||.+..+|..+|.+|..
T Consensus 84 LK~eGN~~m-~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L-g~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 84 LKNEGNKLM-KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKL-GEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh-cchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 334455555 479999999999999999999999999999999886 599999999999999999999999999999999
Q ss_pred cCCCcc
Q 009385 517 TGGEDT 522 (536)
Q Consensus 517 lGr~E~ 522 (536)
+|+++.
T Consensus 162 ~gk~~~ 167 (304)
T KOG0553|consen 162 LGKYEE 167 (304)
T ss_pred cCcHHH
Confidence 998753
No 113
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.08 E-value=5.2e-05 Score=68.75 Aligned_cols=89 Identities=21% Similarity=0.158 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHH
Q 009385 434 PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWAAEETFLEAISADPT---NSYYA 507 (536)
Q Consensus 434 ~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPd---Npeal 507 (536)
+.+++++|.++- ..|+.++|+.+|++|++..+.. ..++..+|..+... |++++|+..+++++...|+ +....
T Consensus 1 ~~~~~~~A~a~d-~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L-G~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 1 PRALYELAWAHD-SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL-GRYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred CchHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCccccHHHH
Confidence 357889998766 6999999999999999987665 56899999988875 7999999999999999898 78888
Q ss_pred HHHHHHHHHcCCCcccc
Q 009385 508 ANYANFLWNTGGEDTCF 524 (536)
Q Consensus 508 ~NyA~~L~elGr~E~cl 524 (536)
..++.+|.+.|+.++++
T Consensus 79 ~f~Al~L~~~gr~~eAl 95 (120)
T PF12688_consen 79 VFLALALYNLGRPKEAL 95 (120)
T ss_pred HHHHHHHHHCCCHHHHH
Confidence 89999999999987654
No 114
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.07 E-value=1.1e-05 Score=89.74 Aligned_cols=157 Identities=11% Similarity=0.098 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHHHhccccccccccHHHHHHhcCccccccCc--------cccCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009385 368 REEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEA--------DDYADYFRTELLYQTGLAQEPNDPLLLAN 439 (536)
Q Consensus 368 ~e~EvaLwnsmvaEA~~mQ~~d~~lD~ea~krlvspV~AeLep--------Dd~gdyeeAee~YqKALeLdPdn~eAL~N 439 (536)
|..|..||..++.-=-..|- .--...++.+++...-+-+. .-.|+-++|..+.+.++..|+.....|.-
T Consensus 4 ~~KE~~lF~~~lk~yE~kQY---kkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv 80 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQY---KKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHV 80 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHH
Confidence 34577788887764333332 22233334444322101111 13478888888889999999988888988
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385 440 YAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGG 519 (536)
Q Consensus 440 LA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr 519 (536)
||.++. ..++|++|+++|+.||.++|+|-..|..++.+..+. ++++.....-.+-++++|.+-..+..+|..+...|+
T Consensus 81 ~gl~~R-~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm-Rd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 81 LGLLQR-SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQM-RDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHHHh-hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 886554 678899999999999999999999999888766654 588888888888899999888888888888888888
Q ss_pred CccccCCCCC
Q 009385 520 EDTCFPLSSP 529 (536)
Q Consensus 520 ~E~clpl~~~ 529 (536)
+..++++-+.
T Consensus 159 y~~A~~il~e 168 (700)
T KOG1156|consen 159 YKMALEILEE 168 (700)
T ss_pred HHHHHHHHHH
Confidence 8777766443
No 115
>PRK15331 chaperone protein SicA; Provisional
Probab=98.07 E-value=1.1e-05 Score=77.18 Aligned_cols=93 Identities=11% Similarity=-0.061 Sum_probs=82.1
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 009385 427 LAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYY 506 (536)
Q Consensus 427 LeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpea 506 (536)
..+.++.-+..+.+|.-+| ..|++++|+..|+-...+||.|++.+..||.++.. .++|++|+..|..|..++++||..
T Consensus 30 ~gis~~~le~iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFY-NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred hCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCc
Confidence 3345556677788887777 58999999999999999999999999999987765 569999999999999999999999
Q ss_pred HHHHHHHHHHcCCCc
Q 009385 507 AANYANFLWNTGGED 521 (536)
Q Consensus 507 l~NyA~~L~elGr~E 521 (536)
.+..|.++..+|+.+
T Consensus 108 ~f~agqC~l~l~~~~ 122 (165)
T PRK15331 108 VFFTGQCQLLMRKAA 122 (165)
T ss_pred cchHHHHHHHhCCHH
Confidence 999999999999864
No 116
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=8.1e-06 Score=87.43 Aligned_cols=109 Identities=21% Similarity=0.210 Sum_probs=85.4
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFS------------KYASFL 479 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~------------nLG~~L 479 (536)
..+++++|...--..+++++.+.++++-.|.++| ...+.++|...|+++|+++|++.++-. .-|.-+
T Consensus 181 ~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y-y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~ 259 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY-YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDA 259 (486)
T ss_pred hcccchhHHHHHHHHHhcccchhHHHHhcccccc-cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhH
Confidence 3478888888888899999999998888888777 688899999999999999998875432 224444
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCCcc
Q 009385 480 WRVRNDLWAAEETFLEAISADPTNSY----YAANYANFLWNTGGEDT 522 (536)
Q Consensus 480 ~e~~GD~eEAee~feKALeLDPdNpe----al~NyA~~L~elGr~E~ 522 (536)
+. .|++.+|.++|..||.+||+|.. .+.|.|.+...+|+.++
T Consensus 260 fk-~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~e 305 (486)
T KOG0550|consen 260 FK-NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLRE 305 (486)
T ss_pred hh-ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchh
Confidence 44 46889999999999999998754 47788888888887643
No 117
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=1.5e-05 Score=83.72 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
+....|+..|...++.-|.|...+...|+++. .++++++|.++|+++++++|.|.+++.-.|.-++. .++.+-|..||
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e-am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY-~~~PE~AlryY 347 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHE-AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY-DNNPEMALRYY 347 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH-HHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc-CCChHHHHHHH
Confidence 45666777777777777777777777776655 56777777777777777777777766655554443 45677777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
++.+++--.+|+.+.|+|.+.+-.+.+|
T Consensus 348 RRiLqmG~~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 348 RRILQMGAQSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHhcCCChHHHhhHHHHHHhhcchh
Confidence 7777777777777777766666666554
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.01 E-value=2.2e-05 Score=91.24 Aligned_cols=105 Identities=9% Similarity=-0.021 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-------------------HHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA-------------------ESFSK 474 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda-------------------eAL~n 474 (536)
+++++|++..+.+++..|+...+|+.+|.+++ ..+++.+|... +++.+-+.+. .|++.
T Consensus 45 ~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~-q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~ 121 (906)
T PRK14720 45 NLTDEAKDICEEHLKEHKKSISALYISGILSL-SRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRT 121 (906)
T ss_pred CCHHHHHHHHHHHHHhCCcceehHHHHHHHHH-hhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHH
Confidence 89999999999999999999999999998666 46666665555 5555555555 99999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385 475 YASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 475 LG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c 523 (536)
||.+|-. .|+.++|.+.|++++++||+|+.++.|||.+|... +.+++
T Consensus 122 LA~~Ydk-~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 122 LAEAYAK-LNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred HHHHHHH-cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 9987654 57999999999999999999999999999999887 65544
No 119
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.99 E-value=4e-05 Score=69.40 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=70.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWA 488 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eE 488 (536)
+.|++++|...|++++...|++ +.+.+.+|.++. ..|++++|+..++. +.-.+-.+.++..+|.++.. .|++++
T Consensus 60 ~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~-~g~~~~ 136 (145)
T PF09976_consen 60 EQGDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLA-QGDYDE 136 (145)
T ss_pred HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHH-CCCHHH
Confidence 3499999999999999988776 357778898888 69999999999976 45566677889999999886 579999
Q ss_pred HHHHHHHHH
Q 009385 489 AEETFLEAI 497 (536)
Q Consensus 489 Aee~feKAL 497 (536)
|+..|++||
T Consensus 137 A~~~y~~Al 145 (145)
T PF09976_consen 137 ARAAYQKAL 145 (145)
T ss_pred HHHHHHHhC
Confidence 999999985
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.97 E-value=7.3e-05 Score=81.32 Aligned_cols=95 Identities=21% Similarity=0.227 Sum_probs=86.2
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 009385 427 LAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYY 506 (536)
Q Consensus 427 LeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpea 506 (536)
...+|.-..+++..|...+ ..|++++|++.+...+...|+|+..+...+.++.+. |+.++|++.+++|+.++|+.+..
T Consensus 299 ~~~~~~~~aa~YG~A~~~~-~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~-nk~~~A~e~~~kal~l~P~~~~l 376 (484)
T COG4783 299 KRSKRGGLAAQYGRALQTY-LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEA-NKAKEAIERLKKALALDPNSPLL 376 (484)
T ss_pred HHhCccchHHHHHHHHHHH-HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCccHH
Confidence 3344889999999998888 589999999999999999999999999999999885 69999999999999999999999
Q ss_pred HHHHHHHHHHcCCCccc
Q 009385 507 AANYANFLWNTGGEDTC 523 (536)
Q Consensus 507 l~NyA~~L~elGr~E~c 523 (536)
..+||..|.+.|+..++
T Consensus 377 ~~~~a~all~~g~~~ea 393 (484)
T COG4783 377 QLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHHHHHHHhcCChHHH
Confidence 99999999999987543
No 121
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.95 E-value=3e-05 Score=85.41 Aligned_cols=113 Identities=23% Similarity=0.277 Sum_probs=92.8
Q ss_pred cCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQE-----PND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE--------PPDAESFSKYA 476 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLd-----Pdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD--------PddaeAL~nLG 476 (536)
.+++++|+.+|++++++. ++| +..+.|||.+++ ..|++++|+++|++||.+. +.....++++|
T Consensus 338 ~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~-~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la 416 (508)
T KOG1840|consen 338 MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYL-KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLA 416 (508)
T ss_pred hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHH
Confidence 379999999999999873 334 577889998888 6999999999999999974 44567899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHcCCCccccCCC
Q 009385 477 SFLWRVRNDLWAAEETFLEAISA----DPTN---SYYAANYANFLWNTGGEDTCFPLS 527 (536)
Q Consensus 477 ~~L~e~~GD~eEAee~feKALeL----DPdN---peal~NyA~~L~elGr~E~clpl~ 527 (536)
..+.+ .+++.+|.+.|.+++.+ -|++ ...+.|||.+|..+|++|++..+.
T Consensus 417 ~~~~~-~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 417 EAYEE-LKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred HHHHH-hcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 87765 56899999999999876 3444 456889999999999998876553
No 122
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.95 E-value=4.5e-05 Score=88.08 Aligned_cols=100 Identities=15% Similarity=0.204 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---CCHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPND-PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR---NDLWAA 489 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn-~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~---GD~eEA 489 (536)
|+|++|..+|.+++..+|++ ...++++|+++. ..|+++.|+.+|++.++..|++.+.+..||.++.... ...++|
T Consensus 321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i-~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI-KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred ccHHHHHHHHHHHHccCCCCccccccchhHHHH-HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 56666666666666666666 555666666655 4566666666666666666666666666665444320 024566
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH
Q 009385 490 EETFLEAISADPTNSYYAANYANFL 514 (536)
Q Consensus 490 ee~feKALeLDPdNpeal~NyA~~L 514 (536)
..+..++++..|.+.+++..+|.+|
T Consensus 400 ~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHH
Confidence 6666666666666666555555533
No 123
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.92 E-value=0.00018 Score=71.75 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhc----
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLL---ANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA---ESFSKYASFLWRVR---- 483 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL---~NLA~lL~e~~GD~deAEe~FeKALeLDPdda---eAL~nLG~~L~e~~---- 483 (536)
|+|++|+..|++++...|+.+.+. +++|.+++ ..+++++|+.+|++.++.+|+|+ .+++.+|.......
T Consensus 46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy-~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~ 124 (243)
T PRK10866 46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSAL 124 (243)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhh
Confidence 899999999999999999988665 78898888 69999999999999999999995 56777776532211
Q ss_pred ----------CC---HHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCCc
Q 009385 484 ----------ND---LWAAEETFLEAISADPTNSYY-----------------AANYANFLWNTGGED 521 (536)
Q Consensus 484 ----------GD---~eEAee~feKALeLDPdNpea-----------------l~NyA~~L~elGr~E 521 (536)
.| ..+|+..|++.++.-|+...+ -...|.++++.|.+.
T Consensus 125 ~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~ 192 (243)
T PRK10866 125 QGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV 192 (243)
T ss_pred hhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 12 357889999999999998643 234566677777653
No 124
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00012 Score=78.89 Aligned_cols=98 Identities=12% Similarity=0.100 Sum_probs=85.9
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385 411 DDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE 490 (536)
Q Consensus 411 Dd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe 490 (536)
.|.---++|..+|+++|.++|+...+-..+|.++. ..|.+++++..++++|...|++ ..+..||.++.-. +.+.+|.
T Consensus 415 ~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~-~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~-Ne~Q~am 491 (564)
T KOG1174|consen 415 PDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ-VEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQ-NEPQKAM 491 (564)
T ss_pred cCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH-hhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHh-hhHHHHH
Confidence 35567789999999999999999999999998877 6899999999999999988865 5678899998765 5899999
Q ss_pred HHHHHHHHhCCCCHHHHHHHH
Q 009385 491 ETFLEAISADPTNSYYAANYA 511 (536)
Q Consensus 491 e~feKALeLDPdNpeal~NyA 511 (536)
.+|.+|+++||+|-..+-.+-
T Consensus 492 ~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 492 EYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHhcCccchHHHHHHH
Confidence 999999999999987655544
No 125
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.89 E-value=0.00013 Score=74.48 Aligned_cols=92 Identities=24% Similarity=0.291 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHH
Q 009385 414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLW 487 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~e 487 (536)
|+|..|+..|+.-|+..|+. +.+++.||..+| .+|++++|...|..+++-.|++ +++++.+|.++.+. |+.+
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l-~~~d 232 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL-GNTD 232 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh-cCHH
Confidence 78999999999999999997 478999999999 6999999999999999998887 58899999999886 5899
Q ss_pred HHHHHHHHHHHhCCCCHHHH
Q 009385 488 AAEETFLEAISADPTNSYYA 507 (536)
Q Consensus 488 EAee~feKALeLDPdNpeal 507 (536)
+|...|++.++--|+.+.+.
T Consensus 233 ~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 233 EACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999988753
No 126
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.87 E-value=2.8e-05 Score=57.66 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385 435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS 477 (536)
Q Consensus 435 eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~ 477 (536)
.++..||.++. ..|++++|++.|+++|+.+|+|++++..||.
T Consensus 2 ~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45666776665 4677777777777777777777777776663
No 127
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.86 E-value=5.5e-05 Score=84.51 Aligned_cols=106 Identities=11% Similarity=0.030 Sum_probs=98.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
+.|.+.++..+..|+..|.+++.+.-.|..++ ..|+-++|..+-+.+++.|+...--|..+|.++.. .++|++|+++|
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~-~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~-dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLN-CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS-DKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhh-cccchHHHHHHHHHHhccCcccchhHHHHHHHHhh-hhhHHHHHHHH
Confidence 68999999999999999999999999999888 68999999999999999999999999999976554 56999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
+.|+.++|+|-+++..++.++.++|+++
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999864
No 128
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.86 E-value=9.2e-05 Score=77.69 Aligned_cols=123 Identities=12% Similarity=0.102 Sum_probs=98.0
Q ss_pred ccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 009385 392 LDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLL-----LANYAQFLYIVAHDYDRAEEYFKRAIAVEP 466 (536)
Q Consensus 392 lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eA-----L~NLA~lL~e~~GD~deAEe~FeKALeLDP 466 (536)
....+++.++.--++. .++++|++..++..++.|++-.. +..||+.+. ...+.++|...++||++.||
T Consensus 139 fa~~AlqqLl~IYQ~t------reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~-~~~~~d~A~~~l~kAlqa~~ 211 (389)
T COG2956 139 FAEGALQQLLNIYQAT------REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL-ASSDVDRARELLKKALQADK 211 (389)
T ss_pred hhHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhCc
Confidence 3344555555444333 69999999999999999887543 344554443 46789999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCCcc
Q 009385 467 PDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNS-YYAANYANFLWNTGGEDT 522 (536)
Q Consensus 467 ddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNp-eal~NyA~~L~elGr~E~ 522 (536)
+++.+=..+|.+... +|+|++|++.++++++.||+.. +++-.+..+|.++|+.+.
T Consensus 212 ~cvRAsi~lG~v~~~-~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 212 KCVRASIILGRVELA-KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred cceehhhhhhHHHHh-ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999999998875 5799999999999999999874 677888999999998754
No 129
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.81 E-value=0.0003 Score=69.55 Aligned_cols=141 Identities=21% Similarity=0.209 Sum_probs=109.4
Q ss_pred cCCCChHHHHHHHHHHHHHHhccccccccccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHH-hCCCCHHHHHHHH
Q 009385 363 SGQVDREEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLA-QEPNDPLLLANYA 441 (536)
Q Consensus 363 ~~~~~~e~EvaLwnsmvaEA~~mQ~~d~~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALe-LdPdn~eAL~NLA 441 (536)
+..+||+-++.--..-++-|+-.|. -+...+|..| .|++.+|..+|++++. +..+|+..+..+|
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApTvqn------------r~rLa~al~e---lGr~~EA~~hy~qalsG~fA~d~a~lLglA 131 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPTVQN------------RYRLANALAE---LGRYHEAVPHYQQALSGIFAHDAAMLLGLA 131 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchhHHH------------HHHHHHHHHH---hhhhhhhHHHHHHHhccccCCCHHHHHHHH
Confidence 4578888777544443444444332 1111122222 2999999999999987 4678999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385 442 QFLYIVAHDYDRAEEYFKRAIAVEPPD--AESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGG 519 (536)
Q Consensus 442 ~lL~e~~GD~deAEe~FeKALeLDPdd--aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr 519 (536)
+..+ ..++...|...+++..+.+|.. ++.+..+|..|.- .|++..|+..|+.|+..-|+ ++....|+.+|..+|+
T Consensus 132 ~Aqf-a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr 208 (251)
T COG4700 132 QAQF-AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR 208 (251)
T ss_pred HHHH-hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc
Confidence 9988 5899999999999999999875 6778888998875 57999999999999999887 6788899999999996
Q ss_pred Cc
Q 009385 520 ED 521 (536)
Q Consensus 520 ~E 521 (536)
.+
T Consensus 209 ~~ 210 (251)
T COG4700 209 LR 210 (251)
T ss_pred hh
Confidence 54
No 130
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.80 E-value=7.1e-05 Score=79.20 Aligned_cols=90 Identities=16% Similarity=0.211 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
+.+..|+..|..|++.||++..+++..|.+|. ..|+-..|+..|.+.|++.|+...+....|.++..+ |.+++|+.-|
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~-Gele~A~~DF 129 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ-GELEQAEADF 129 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc-ccHHHHHHHH
Confidence 78999999999999999999999999998876 799999999999999999999999999999999875 6999999999
Q ss_pred HHHHHhCCCCHH
Q 009385 494 LEAISADPTNSY 505 (536)
Q Consensus 494 eKALeLDPdNpe 505 (536)
++.|..+|++-.
T Consensus 130 ~~vl~~~~s~~~ 141 (504)
T KOG0624|consen 130 DQVLQHEPSNGL 141 (504)
T ss_pred HHHHhcCCCcch
Confidence 999999996653
No 131
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.76 E-value=4e-05 Score=83.06 Aligned_cols=58 Identities=16% Similarity=0.031 Sum_probs=53.5
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCCcc
Q 009385 464 VEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYY---AANYANFLWNTGGEDT 522 (536)
Q Consensus 464 LDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpea---l~NyA~~L~elGr~E~ 522 (536)
.+|+++++++|+|.+|+.. |+|++|+.+|++||+++|+++++ ++|+|.+|..+|+.++
T Consensus 70 ~dP~~a~a~~NLG~AL~~l-GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dE 130 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSK-GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKK 130 (453)
T ss_pred CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHH
Confidence 6899999999999999875 79999999999999999999965 9999999999998654
No 132
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.76 E-value=4e-05 Score=86.43 Aligned_cols=73 Identities=14% Similarity=0.240 Sum_probs=68.4
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 448 AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 448 ~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
.++|.+|.++|+++++++|-....|+.+|.+.+.. +++.+|.++|.+++.++|++.+++.|++..|..+|+-.
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql-ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ 570 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL-EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKK 570 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH-hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhH
Confidence 57999999999999999999999999999988876 59999999999999999999999999999999998653
No 133
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.76 E-value=2.5e-05 Score=55.82 Aligned_cols=32 Identities=28% Similarity=0.520 Sum_probs=15.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385 458 FKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE 490 (536)
Q Consensus 458 FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe 490 (536)
|+|||+++|+|+.+|++||.+|.. .|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLN-QGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhc
Confidence 444455555555555555544443 23444443
No 134
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0001 Score=79.26 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDP----LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA 489 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~----eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA 489 (536)
|+|.+|.++|..||.++|+|. .+|.|.|.+.. ..|+..+|+...+.|+.+||....++..-|.++... +++++|
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~-rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l-e~~e~A 340 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI-RLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL-EKWEEA 340 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc-ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 899999999999999999974 56788887776 689999999999999999999999999999988776 599999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009385 490 EETFLEAISADPTNSYYAANYANFLW 515 (536)
Q Consensus 490 ee~feKALeLDPdNpeal~NyA~~L~ 515 (536)
.+.|++|++++-+ .++...+..+..
T Consensus 341 V~d~~~a~q~~~s-~e~r~~l~~A~~ 365 (486)
T KOG0550|consen 341 VEDYEKAMQLEKD-CEIRRTLREAQL 365 (486)
T ss_pred HHHHHHHHhhccc-cchHHHHHHHHH
Confidence 9999999999877 665555544443
No 135
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.72 E-value=0.00016 Score=84.06 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV----------- 482 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~----------- 482 (536)
++.+.|..+|-+++++||+.+.++.-+|.+|.. -.|+.+|.++|.+|.++||.++++.-..+..+.+.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd-~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRD-SDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 567889999999999999999999999988775 44899999999999999999988876666543321
Q ss_pred ------------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385 483 ------------------------RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFP 525 (536)
Q Consensus 483 ------------------------~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~clp 525 (536)
.+++-.|+..|+.|++.||++...+..+|.+|-..|++..+++
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlK 617 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALK 617 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHH
Confidence 1367788999999999999999999999999999999876654
No 136
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.72 E-value=3.2e-05 Score=55.28 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHH
Q 009385 422 LYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAE 455 (536)
Q Consensus 422 ~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAE 455 (536)
+|++||+++|+|+.+|++||.++. ..|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYL-NQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhhc
Confidence 478888888888888888888777 578888876
No 137
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.71 E-value=0.00029 Score=66.37 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCCHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA----ESFSKYASFLWRVRNDLWAA 489 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda----eAL~nLG~~L~e~~GD~eEA 489 (536)
++.+.|++.|.+||.+-|.++.+|+|.|+.+. .+|+.++|...+.+|+++.-+-. .++..-|.+ |+..|+.+.|
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l-yRl~g~dd~A 134 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL-YRLLGNDDAA 134 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHhCchHHH
Confidence 89999999999999999999999999999988 69999999999999999986554 456777765 4556899999
Q ss_pred HHHHHHHHHhCCCCH
Q 009385 490 EETFLEAISADPTNS 504 (536)
Q Consensus 490 ee~feKALeLDPdNp 504 (536)
..-|+.|.++-...+
T Consensus 135 R~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 135 RADFEAAAQLGSKFA 149 (175)
T ss_pred HHhHHHHHHhCCHHH
Confidence 999999988865543
No 138
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00018 Score=76.96 Aligned_cols=87 Identities=17% Similarity=0.240 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
++|.+|+....++|.++|+|.-+++-.|+++. ..++|+.|...|++|++++|+|-.+...|..+.-..+...++..+.|
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALL-ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999988 69999999999999999999999999999876655554445557788
Q ss_pred HHHHHhCC
Q 009385 494 LEAISADP 501 (536)
Q Consensus 494 eKALeLDP 501 (536)
.+.+..-+
T Consensus 350 ~~mF~k~~ 357 (397)
T KOG0543|consen 350 ANMFAKLA 357 (397)
T ss_pred HHHhhccc
Confidence 88777544
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.70 E-value=0.00016 Score=84.17 Aligned_cols=81 Identities=14% Similarity=0.059 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009385 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFL 494 (536)
Q Consensus 415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~fe 494 (536)
++ .+.++|...+...|++..+++.+|.+|- .+|++++|...|+++|++||+|+.++++||..|... ++++|++++.
T Consensus 98 ~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Yd-k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~ 173 (906)
T PRK14720 98 KW-AIVEHICDKILLYGENKLALRTLAEAYA-KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLK 173 (906)
T ss_pred ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence 44 6777777777778888899999997655 689999999999999999999999999999888764 7888888888
Q ss_pred HHHHh
Q 009385 495 EAISA 499 (536)
Q Consensus 495 KALeL 499 (536)
+|++.
T Consensus 174 KAV~~ 178 (906)
T PRK14720 174 KAIYR 178 (906)
T ss_pred HHHHH
Confidence 88775
No 140
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.0004 Score=69.37 Aligned_cols=94 Identities=21% Similarity=0.287 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDP-----LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWA 488 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~-----eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eE 488 (536)
|+|++|..-|+.||++-|..+ -+|.|.|.++. .++..+.|++..-+||+++|.+-.|+-..|.+|-. ...|++
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i-Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek-~ek~ee 186 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI-KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK-MEKYEE 186 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH-HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-hhhHHH
Confidence 899999999999999999865 36778887766 68999999999999999999999999999876655 468999
Q ss_pred HHHHHHHHHHhCCCCHHHHHH
Q 009385 489 AEETFLEAISADPTNSYYAAN 509 (536)
Q Consensus 489 Aee~feKALeLDPdNpeal~N 509 (536)
|++-|++.+++||.+-++.-.
T Consensus 187 aleDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 187 ALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHHHHHHHHHhCcchHHHHHH
Confidence 999999999999998776443
No 141
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.67 E-value=0.00035 Score=67.26 Aligned_cols=92 Identities=23% Similarity=0.285 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhc----
Q 009385 414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA---ESFSKYASFLWRVR---- 483 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda---eAL~nLG~~L~e~~---- 483 (536)
|+|.+|+..|++.+...|+. +.+++.+|..++ ..|++++|...|++.++..|+++ .+++.+|..++...
T Consensus 19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~ 97 (203)
T PF13525_consen 19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL 97 (203)
T ss_dssp T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch
Confidence 89999999999999999875 467888999988 69999999999999999999986 57888888765532
Q ss_pred ------CCHHHHHHHHHHHHHhCCCCHHH
Q 009385 484 ------NDLWAAEETFLEAISADPTNSYY 506 (536)
Q Consensus 484 ------GD~eEAee~feKALeLDPdNpea 506 (536)
+...+|+..|+..++.-|+++.+
T Consensus 98 ~~~~D~~~~~~A~~~~~~li~~yP~S~y~ 126 (203)
T PF13525_consen 98 RSDRDQTSTRKAIEEFEELIKRYPNSEYA 126 (203)
T ss_dssp -TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred hcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence 12468999999999999998754
No 142
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.65 E-value=0.00044 Score=79.59 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=92.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
+.|+..++......|-.++|+|.+.|..++.... .+|++++|.-||-|||+++|.+...++..+.++-+ .|++.+|.+
T Consensus 185 qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~-~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~-~G~~~~Am~ 262 (895)
T KOG2076|consen 185 QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE-QLGNINQARYCYSRAIQANPSNWELIYERSSLYQK-TGDLKRAME 262 (895)
T ss_pred HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-hChHHHHHH
Confidence 4589999999999999999999999999998766 68999999999999999999999999999986655 579999999
Q ss_pred HHHHHHHhCCCCH-----HHHHHHHHHHHHcCCCcc
Q 009385 492 TFLEAISADPTNS-----YYAANYANFLWNTGGEDT 522 (536)
Q Consensus 492 ~feKALeLDPdNp-----eal~NyA~~L~elGr~E~ 522 (536)
.|.+++.++|... .....+++++...++.+.
T Consensus 263 ~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 263 TFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred HHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999211 123456676766665443
No 143
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00016 Score=73.39 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
..|..|+.+|.+||.++|..+..+.|.|..+. ..++++.++...++|++++||-+.+++.+|..+.... .+++|+..+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchl-k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~-~~~eaI~~L 101 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHL-KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK-GYDEAIKVL 101 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHH-HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc-cccHHHHHH
Confidence 58999999999999999999999999997766 5899999999999999999999999999999888754 799999999
Q ss_pred HHHHHh
Q 009385 494 LEAISA 499 (536)
Q Consensus 494 eKALeL 499 (536)
++|..+
T Consensus 102 qra~sl 107 (284)
T KOG4642|consen 102 QRAYSL 107 (284)
T ss_pred HHHHHH
Confidence 999654
No 144
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00025 Score=77.22 Aligned_cols=112 Identities=20% Similarity=0.170 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
.+..+|+++|.++..+-|++|.++..||.+|- ..||-.+|..|+-...+.-|-|.+..-.||..+.+. +-.++|+.||
T Consensus 572 ed~aqaie~~~q~~slip~dp~ilskl~dlyd-qegdksqafq~~ydsyryfp~nie~iewl~ayyidt-qf~ekai~y~ 649 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSLIPNDPAILSKLADLYD-QEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT-QFSEKAINYF 649 (840)
T ss_pred hCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh-cccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 34455555555555555555555555554433 345555555555555555555555555555444443 2468999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCccccCCC
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGEDTCFPLS 527 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E~clpl~ 527 (536)
++|--+.|+...+....+.++.+.|.+.++|-++
T Consensus 650 ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 650 EKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred HHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999999999999999999999999988776543
No 145
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.61 E-value=7.7e-05 Score=81.08 Aligned_cols=110 Identities=12% Similarity=0.116 Sum_probs=93.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
++|+.|+..|.|||+++|+++..+.|.++++. ..+++-.|+..+.+|++++|....+|+.-|..... .+++.+|...|
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~l-K~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l~~~~~A~~~l 95 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHL-KVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-LGEFKKALLDL 95 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhhe-eechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-HHHHHHHHHHH
Confidence 69999999999999999999999999997665 68999999999999999999999999999987765 46999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHH--HHHcCCCccccC
Q 009385 494 LEAISADPTNSYYAANYANF--LWNTGGEDTCFP 525 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~--L~elGr~E~clp 525 (536)
++...+.|+++.+...+..+ +...-+.|..-+
T Consensus 96 ~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~ 129 (476)
T KOG0376|consen 96 EKVKKLAPNDPDATRKIDECNKIVSEEKFEKAIL 129 (476)
T ss_pred HHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhccc
Confidence 99999999999986655444 333434444433
No 146
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.61 E-value=0.00012 Score=54.30 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385 469 AESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYAN 512 (536)
Q Consensus 469 aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~ 512 (536)
++++..||.++... |++++|+++|+++++.+|+|+.++..||.
T Consensus 1 p~~~~~la~~~~~~-G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRL-GQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 46789999988774 79999999999999999999999998875
No 147
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.60 E-value=0.00089 Score=71.14 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHH---HHHHHHH------------HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLL---LANYAQF------------LYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASF 478 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eA---L~NLA~l------------L~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~ 478 (536)
|++++|+.-|...|.-+|++... ...++.+ .+ ..||+..|+++..+.|++.|-|+..+...+.+
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~-~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSAS-GSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHh-cCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 89999999999999999976543 3333321 12 35799999999999999999999999999988
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-------cccCCCC
Q 009385 479 LWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED-------TCFPLSS 528 (536)
Q Consensus 479 L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E-------~clpl~~ 528 (536)
+.. .|++..|+.-++.|-++..+|.+.++..+.+|+..|+.+ +|+++++
T Consensus 199 ~i~-~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp 254 (504)
T KOG0624|consen 199 YIA-EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP 254 (504)
T ss_pred HHh-cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc
Confidence 765 579999999999999999999999999999999999864 6887765
No 148
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.59 E-value=0.00014 Score=74.53 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
+.+.+|.-.|+......|..+.+++.+|.+.. .+|++++|++.+++|+..+|+|++++.|+..+....++..+++.+++
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l-~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL-QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH-HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 35777777888766666777777777776655 57888888888888888888888888888776655543336677777
Q ss_pred HHHHHhCCCCHHH
Q 009385 494 LEAISADPTNSYY 506 (536)
Q Consensus 494 eKALeLDPdNpea 506 (536)
.+....+|+++..
T Consensus 260 ~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 260 SQLKQSNPNHPLV 272 (290)
T ss_dssp HHCHHHTTTSHHH
T ss_pred HHHHHhCCCChHH
Confidence 7777778877764
No 149
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.58 E-value=0.0019 Score=54.34 Aligned_cols=103 Identities=25% Similarity=0.338 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHHHH
Q 009385 414 ADYFRTELLYQTGLAQEP---NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP-DAESFSKYASFLWRVRNDLWAA 489 (536)
Q Consensus 414 gdyeeAee~YqKALeLdP---dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd-daeAL~nLG~~L~e~~GD~eEA 489 (536)
+++++|...|.+++..+| .....+..++..+. ..+++++|...+.+++...|. ...++..++..+.. .+++++|
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a 221 (291)
T COG0457 144 GDYEEALELYEKALELDPELNELAEALLALGALLE-ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LGKYEEA 221 (291)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH-HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cccHHHH
Confidence 677777777777777666 34445555554433 467777777777777777777 57777777766654 3467777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385 490 EETFLEAISADPTNSYYAANYANFLWNTG 518 (536)
Q Consensus 490 ee~feKALeLDPdNpeal~NyA~~L~elG 518 (536)
..++.+++...|........++..+...|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 222 LEYYEKALELDPDNAEALYNLALLLLELG 250 (291)
T ss_pred HHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence 77777777777776556666666665444
No 150
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.54 E-value=0.0012 Score=62.05 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCC--
Q 009385 414 ADYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA---ESFSKYASFLWRVRND-- 485 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~---eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda---eAL~nLG~~L~e~~GD-- 485 (536)
|+|.+|++.|+......|..+ .+...++.+++ ..+++++|...+++-|+++|+|+ .+++..|...+.+. +
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~-~~~ 101 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD-EGS 101 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh-hhH
Confidence 899999999999999998865 56777888888 69999999999999999999997 46777777666643 3
Q ss_pred -------------HHHHHHHHHHHHHhCCCCHHHH
Q 009385 486 -------------LWAAEETFLEAISADPTNSYYA 507 (536)
Q Consensus 486 -------------~eEAee~feKALeLDPdNpeal 507 (536)
..+|...|++.|+.-|++..+.
T Consensus 102 ~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 102 LQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 7899999999999999987653
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.53 E-value=0.00034 Score=70.90 Aligned_cols=105 Identities=22% Similarity=0.313 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009385 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFL 494 (536)
Q Consensus 415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~fe 494 (536)
..+.|...|.+|++..+-+..+|..+|.+-+...+|.+.|.+.|+++++.-|.+.+.+..|..++... +|.+.|..+|+
T Consensus 16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~-~d~~~aR~lfe 94 (280)
T PF05843_consen 16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL-NDINNARALFE 94 (280)
T ss_dssp HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-HHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 35666666777765445556666666665442245555577777777777777777766666666654 46677777777
Q ss_pred HHHHhCCCCH---HHHHHHHHHHHHcCCC
Q 009385 495 EAISADPTNS---YYAANYANFLWNTGGE 520 (536)
Q Consensus 495 KALeLDPdNp---eal~NyA~~L~elGr~ 520 (536)
+++..-|... .++..|..+-...|+.
T Consensus 95 r~i~~l~~~~~~~~iw~~~i~fE~~~Gdl 123 (280)
T PF05843_consen 95 RAISSLPKEKQSKKIWKKFIEFESKYGDL 123 (280)
T ss_dssp HHCCTSSCHHHCHHHHHHHHHHHHHHS-H
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHcCCH
Confidence 7766655444 3455555555555543
No 152
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00035 Score=75.41 Aligned_cols=108 Identities=19% Similarity=0.233 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------------------------------HhCCHHHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI---------------------------------VAHDYDRAEEYFKR 460 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e---------------------------------~~GD~deAEe~FeK 460 (536)
|++++|+..|+++.-+||.+....--||.++.. ..+++.+|..+-+|
T Consensus 246 Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 777777777777777777777766666655431 23466778888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385 461 AIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDT 522 (536)
Q Consensus 461 ALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~ 522 (536)
+|+.+|++..++..-|.+|... ++.++|+..|+.|+.+.|-.-..+..+-+.|...|+..+
T Consensus 326 ~I~~~~r~~~alilKG~lL~~~-~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 326 CIDSEPRNHEALILKGRLLIAL-ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred HhccCcccchHHHhccHHHHhc-cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 8888888888888888877654 588888888888888888888888888887777776543
No 153
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.52 E-value=0.00033 Score=70.60 Aligned_cols=128 Identities=18% Similarity=0.244 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHHHhccccccccccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 009385 368 REEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV 447 (536)
Q Consensus 368 ~e~EvaLwnsmvaEA~~mQ~~d~~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~ 447 (536)
=|+|| |++..+++-. ...+.+|..+++.-.-.+- -|-.|-..-|.--|.++|.++|+-+++++-+|..+. .
T Consensus 41 lqqEV-----~iarlsqlL~-~~~l~~eeRA~l~fERGvl--YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~-~ 111 (297)
T COG4785 41 LQQEV-----ILARMSQILA-SRALTDEERAQLLFERGVL--YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-Q 111 (297)
T ss_pred HHHHH-----HHHHHHHHHH-hccCChHHHHHHHHHhcch--hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH-h
Confidence 35666 3333333222 3456666666554422111 134478888999999999999999999999996555 6
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 009385 448 AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSY 505 (536)
Q Consensus 448 ~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpe 505 (536)
.|+++.|.+.|.-.+++||.+-.++.|-|..++- +|++.-|.+-|.+--+.||++|.
T Consensus 112 a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 112 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred cccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHhhHHHHHHHHhcCCCChH
Confidence 8999999999999999999999999999988775 57999999999999999999985
No 154
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.46 E-value=0.00044 Score=70.91 Aligned_cols=105 Identities=16% Similarity=0.023 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH--DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G--D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
++++.|.+.++++-+.+.+.......-|.+.. ..| .+.+|.-.|+...+..|..+..++.++.+... .|++++|+.
T Consensus 145 ~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l-~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~~~eAe~ 222 (290)
T PF04733_consen 145 NRPDLAEKELKNMQQIDEDSILTQLAEAWVNL-ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGHYEEAEE 222 (290)
T ss_dssp T-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH-HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-HHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCHHHHHH
Confidence 79999999999998887765544444443433 334 59999999999888778999999999988876 579999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385 492 TFLEAISADPTNSYYAANYANFLWNTGGE 520 (536)
Q Consensus 492 ~feKALeLDPdNpeal~NyA~~L~elGr~ 520 (536)
.+++|++.+|+++..+.|+..+...+|+.
T Consensus 223 ~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 223 LLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999976
No 155
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.45 E-value=0.00031 Score=47.99 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 009385 435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD 468 (536)
Q Consensus 435 eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd 468 (536)
.+++.+|.+++ ..|++++|+++|+++++++|+|
T Consensus 2 ~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence 34445554444 3455555555555555555543
No 156
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.0016 Score=68.59 Aligned_cols=93 Identities=13% Similarity=0.069 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA-ESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda-eAL~nLG~~L~e~~GD~eEAee~ 492 (536)
.+.++|..++.||++.||++..+-..+|.+.. ..|+|++|++.++++++.||+.. +++..|-.+|.. .|+.++.+..
T Consensus 194 ~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~-lg~~~~~~~f 271 (389)
T COG2956 194 SDVDRARELLKKALQADKKCVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ-LGKPAEGLNF 271 (389)
T ss_pred hhHHHHHHHHHHHHhhCccceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH-hCCHHHHHHH
Confidence 68999999999999999999999999999987 68999999999999999999984 677777776665 4799999999
Q ss_pred HHHHHHhCCCCHHHHH
Q 009385 493 FLEAISADPTNSYYAA 508 (536)
Q Consensus 493 feKALeLDPdNpeal~ 508 (536)
+.++++..++....+.
T Consensus 272 L~~~~~~~~g~~~~l~ 287 (389)
T COG2956 272 LRRAMETNTGADAELM 287 (389)
T ss_pred HHHHHHccCCccHHHH
Confidence 9999999887654433
No 157
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.44 E-value=0.001 Score=66.37 Aligned_cols=85 Identities=15% Similarity=-0.006 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---
Q 009385 432 NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESF---SKYASFLWRVRNDLWAAEETFLEAISADPTNSY--- 505 (536)
Q Consensus 432 dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL---~nLG~~L~e~~GD~eEAee~feKALeLDPdNpe--- 505 (536)
..+..++..|.-++ ..|++++|++.|++++...|+.+.+. ..+|.+++.. +++++|+.+|++.++..|+++.
T Consensus 30 ~~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~-~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 30 NPPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCcCCCchHH
Confidence 35666777787777 58999999999999999999998665 8899988875 6999999999999999999875
Q ss_pred HHHHHHHHHHHcC
Q 009385 506 YAANYANFLWNTG 518 (536)
Q Consensus 506 al~NyA~~L~elG 518 (536)
+++..|......+
T Consensus 108 a~Y~~g~~~~~~~ 120 (243)
T PRK10866 108 VLYMRGLTNMALD 120 (243)
T ss_pred HHHHHHHhhhhcc
Confidence 4566666554444
No 158
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.41 E-value=0.00026 Score=48.94 Aligned_cols=32 Identities=28% Similarity=0.542 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 009385 435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP 467 (536)
Q Consensus 435 eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd 467 (536)
.+|+++|.++. .+|++++|+.+|++||+++|+
T Consensus 2 ~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYF-QLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcC
Confidence 34555555444 355555555555555555554
No 159
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.39 E-value=0.0012 Score=71.02 Aligned_cols=80 Identities=24% Similarity=0.321 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
++..+|++.+.++|..+|.+..++...|.++. ..++++.|+++.++|+.+.|++-..|+.|+.+|... |++++|+..+
T Consensus 214 ~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl-~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~-~d~e~ALlaL 291 (395)
T PF09295_consen 214 NEEVEAIRLLNEALKENPQDSELLNLQAEFLL-SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQL-GDFENALLAL 291 (395)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 56789999999999999999999999999988 689999999999999999999999999999988875 6999999766
Q ss_pred HH
Q 009385 494 LE 495 (536)
Q Consensus 494 eK 495 (536)
..
T Consensus 292 Ns 293 (395)
T PF09295_consen 292 NS 293 (395)
T ss_pred hc
Confidence 53
No 160
>PLN03077 Protein ECB2; Provisional
Probab=97.38 E-value=0.0017 Score=74.51 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=86.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPN--DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA 489 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPd--n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA 489 (536)
..|+.++|.++|+...+..+- +...|..+..++. ..|++++|++.+++. .+.|+ +.+|..|-..+. ..++.+.|
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~-r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~-~~~~~e~~ 676 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG-RAGKLTEAYNFINKM-PITPD-PAVWGALLNACR-IHRHVELG 676 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-hCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHH-HcCChHHH
Confidence 348999999999998855322 4567777887777 689999999999985 46665 556666555443 46799999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385 490 EETFLEAISADPTNSYYAANYANFLWNTGGEDT 522 (536)
Q Consensus 490 ee~feKALeLDPdNpeal~NyA~~L~elGr~E~ 522 (536)
+...+++++++|+++.++..++++|...|+.++
T Consensus 677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 999999999999999999999999999998654
No 161
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.37 E-value=0.00062 Score=79.29 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cCCHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV--RNDLWAAEE 491 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~--~GD~eEAee 491 (536)
.+|++|++..+++|+.||+|..++.-+|..++...++.++|.+.|..|.+++|++.-||-.|+.++-.. -.+++++-.
T Consensus 16 k~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~~~ 95 (1238)
T KOG1127|consen 16 KEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRAAK 95 (1238)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHhHH
Confidence 799999999999999999999999999999886556699999999999999999999999999865431 136899999
Q ss_pred HHHHHHHhCCCCH
Q 009385 492 TFLEAISADPTNS 504 (536)
Q Consensus 492 ~feKALeLDPdNp 504 (536)
+|++++-+.|+..
T Consensus 96 ~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 96 CYQRAVLILENQS 108 (1238)
T ss_pred HHHHHHHhhhhhh
Confidence 9999998877654
No 162
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.32 E-value=0.0069 Score=50.96 Aligned_cols=88 Identities=25% Similarity=0.376 Sum_probs=80.6
Q ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPN-DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPd-n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
.+++.+|+..+.+++...+. ....+.+++..+. ..+++++|..++.+++...|.....+..++..+. ..+++++|..
T Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 257 (291)
T COG0457 180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYL-KLGKYEEALEYYEKALELDPDNAEALYNLALLLL-ELGRYEEALE 257 (291)
T ss_pred hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH-HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcCCHHHHHH
Confidence 37999999999999999999 7999999998777 5889999999999999999998888888888887 5678999999
Q ss_pred HHHHHHHhCCC
Q 009385 492 TFLEAISADPT 502 (536)
Q Consensus 492 ~feKALeLDPd 502 (536)
.+.+++..+|.
T Consensus 258 ~~~~~~~~~~~ 268 (291)
T COG0457 258 ALEKALELDPD 268 (291)
T ss_pred HHHHHHHhCcc
Confidence 99999999998
No 163
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.32 E-value=0.00078 Score=65.73 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385 451 YDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR---------NDLWAAEETFLEAISADPTNSYYAANYANFLWNTGG 519 (536)
Q Consensus 451 ~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~---------GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr 519 (536)
++.|.+.++.....+|+|++++++.|.+|.++. .-+++|+.-|++||.++|+...+++++|++|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999887752 136789999999999999999999999999988774
No 164
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0017 Score=66.61 Aligned_cols=91 Identities=20% Similarity=0.291 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQ--------EPNDP----------LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKY 475 (536)
Q Consensus 414 gdyeeAee~YqKALeL--------dPdn~----------eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nL 475 (536)
++|++|+..|+.||.. .|.++ .++.||++.+. ..|+|-++++.....|..+|.|..||+.-
T Consensus 192 ~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~~~~~nvKA~frR 270 (329)
T KOG0545|consen 192 GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILRHHPGNVKAYFRR 270 (329)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 7888999988888643 56655 47889999877 68999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 009385 476 ASFLWRVRNDLWAAEETFLEAISADPTNSYY 506 (536)
Q Consensus 476 G~~L~e~~GD~eEAee~feKALeLDPdNpea 506 (536)
|......- +..+|++-|.++++++|.-...
T Consensus 271 akAhaa~W-n~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 271 AKAHAAVW-NEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHHhhc-CHHHHHHHHHHHHhcChhhHHH
Confidence 98877665 7999999999999999976544
No 165
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.30 E-value=0.00055 Score=46.76 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 009385 469 AESFSKYASFLWRVRNDLWAAEETFLEAISADPTN 503 (536)
Q Consensus 469 aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN 503 (536)
+.+++.+|.+++.. |++++|+++|++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~-~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQL-GNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHCcCC
Confidence 56899999998875 69999999999999999986
No 166
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.26 E-value=0.0026 Score=69.97 Aligned_cols=94 Identities=17% Similarity=0.255 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009385 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFL 494 (536)
Q Consensus 415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~fe 494 (536)
=..+-...|++|+...+.|+.+|.+|..+.. ..+.+.+-.+.|.++|..+|++++.|...|.-.++.+-+.+.|.++|.
T Consensus 86 i~~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 86 IPNRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence 3445677999999999999999999987655 566799999999999999999999999999888887766999999999
Q ss_pred HHHHhCCCCHHHHHH
Q 009385 495 EAISADPTNSYYAAN 509 (536)
Q Consensus 495 KALeLDPdNpeal~N 509 (536)
++|+.+|++|..+.-
T Consensus 165 rgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 165 RGLRFNPDSPKLWKE 179 (568)
T ss_pred HHhhcCCCChHHHHH
Confidence 999999999987543
No 167
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.22 E-value=0.00054 Score=47.36 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 009385 469 AESFSKYASFLWRVRNDLWAAEETFLEAISADPTN 503 (536)
Q Consensus 469 aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN 503 (536)
+.+|+++|.++... |++++|+.+|++|++++|+|
T Consensus 1 a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQL-GDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHh-CCchHHHHHHHHHHHHCcCC
Confidence 46899999988775 69999999999999999985
No 168
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.22 E-value=0.00085 Score=70.49 Aligned_cols=64 Identities=20% Similarity=0.405 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS 477 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~ 477 (536)
.|+.++|..+|+.|++++|++++++..+|++.. ..++.-+|..||-+||.++|.|.+++.+-+.
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 366677777777777777777777777776655 3566666777777777777777776666554
No 169
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.002 Score=65.97 Aligned_cols=84 Identities=24% Similarity=0.239 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 009385 437 LANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWAAEETFLEAISADPTN---SYYAANY 510 (536)
Q Consensus 437 L~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN---peal~Ny 510 (536)
+++.|.-++ ..|||+.|+..|..-|+..|+. ++++++||..++.+ |++++|...|..+++--|++ |+.++.+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~q-g~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQ-GDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhc-ccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 677777677 5899999999999999999998 58999999999975 69999999999999988776 5779999
Q ss_pred HHHHHHcCCCcc
Q 009385 511 ANFLWNTGGEDT 522 (536)
Q Consensus 511 A~~L~elGr~E~ 522 (536)
|.++.++|+.|+
T Consensus 222 g~~~~~l~~~d~ 233 (262)
T COG1729 222 GVSLGRLGNTDE 233 (262)
T ss_pred HHHHHHhcCHHH
Confidence 999999998654
No 170
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.18 E-value=0.002 Score=71.38 Aligned_cols=82 Identities=29% Similarity=0.347 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009385 438 ANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNT 517 (536)
Q Consensus 438 ~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~el 517 (536)
+.+|+.+. ..|++++|.++.++||+..|..++.|...|.+|-+ .|++++|.++++.|..+|+.|-.+-...+.++.+.
T Consensus 198 ~~lAqhyd-~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYD-YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 34455444 46777777777777777777777777777776655 35777777777777777777766666666666676
Q ss_pred CCCc
Q 009385 518 GGED 521 (536)
Q Consensus 518 Gr~E 521 (536)
|+.+
T Consensus 276 ~~~e 279 (517)
T PF12569_consen 276 GRIE 279 (517)
T ss_pred CCHH
Confidence 6654
No 171
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.13 E-value=0.0042 Score=69.80 Aligned_cols=108 Identities=11% Similarity=0.022 Sum_probs=85.4
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPN--DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE 490 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPd--n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe 490 (536)
.|+.++|.++|+...+..+- +...|..+..+|. ..|++++|++.+++. ...| +...|..+...+.. .|+++.|+
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~-r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~-~g~~~~a~ 514 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG-REGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRI-HKNLELGR 514 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH-hcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH-cCCcHHHH
Confidence 38999999999999875332 3445666777777 689999999999875 2344 45667777766655 57999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385 491 ETFLEAISADPTNSYYAANYANFLWNTGGEDTCF 524 (536)
Q Consensus 491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~cl 524 (536)
..+++.++++|++...+..+.++|...|+.+++.
T Consensus 515 ~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 9999999999999888899999999999876443
No 172
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.12 E-value=0.0025 Score=71.99 Aligned_cols=104 Identities=14% Similarity=0.073 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
++.++|+++++++|+..|+...+|..+|+++. .+++.+.|.+.|...++.-|+....|..|+.+- +..|.+-+|...+
T Consensus 665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e-~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle-Ek~~~~~rAR~il 742 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEE-QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE-EKDGQLVRARSIL 742 (913)
T ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHHHH-HHhcchhhHHHHH
Confidence 57777888888888888888888888887766 577788888888888888888877777777643 3445777888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGG 519 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr 519 (536)
++|.--+|+|+..+...-.+-.+.|.
T Consensus 743 drarlkNPk~~~lwle~Ir~ElR~gn 768 (913)
T KOG0495|consen 743 DRARLKNPKNALLWLESIRMELRAGN 768 (913)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHcCC
Confidence 88888888887766665555566664
No 173
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.10 E-value=0.00063 Score=54.73 Aligned_cols=50 Identities=24% Similarity=0.406 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHh---C-CCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 009385 414 ADYFRTELLYQTGLAQ---E-PND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAV 464 (536)
Q Consensus 414 gdyeeAee~YqKALeL---d-Pdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeL 464 (536)
|++++|+.+|++|+.+ . +++ ..++.++|.++. ..|++++|+++|++|+++
T Consensus 19 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 19 GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDI 75 (78)
T ss_dssp T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence 8999999999999976 2 222 567889998888 699999999999999986
No 174
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.10 E-value=0.0054 Score=69.45 Aligned_cols=113 Identities=20% Similarity=0.292 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-------------------------
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD------------------------- 468 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd------------------------- 468 (536)
+..-+|...+.++...||+|..+|...-++-+ ..|..+.|+...-+||+--|++
T Consensus 733 ~~~~rAR~ildrarlkNPk~~~lwle~Ir~El-R~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk 811 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKNPKNALLWLESIRMEL-RAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK 811 (913)
T ss_pred cchhhHHHHHHHHHhcCCCcchhHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH
Confidence 68889999999999999999999977666655 5899999999888888766554
Q ss_pred -----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------CccccCCCC
Q 009385 469 -----AESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGG----------EDTCFPLSS 528 (536)
Q Consensus 469 -----aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr----------~E~clpl~~ 528 (536)
+.++...|.++|..+ ++++|.++|.+|++++|++-.++..+-.+....|. .++|-|.+-
T Consensus 812 kce~dphVllaia~lfw~e~-k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG 885 (913)
T KOG0495|consen 812 KCEHDPHVLLAIAKLFWSEK-KIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHG 885 (913)
T ss_pred hccCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Confidence 455566777777654 89999999999999999999998888888888883 356666654
No 175
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.99 E-value=0.0063 Score=58.64 Aligned_cols=83 Identities=16% Similarity=0.094 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---H
Q 009385 433 DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSY---Y 506 (536)
Q Consensus 433 n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpe---a 506 (536)
.+..++..|..++ ..|++++|++.|++.+...|+. +.+...+|..++.. |++++|+..|++-++..|+++. +
T Consensus 4 ~~~~lY~~a~~~~-~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~-~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 4 TAEALYQKALEAL-QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ-GDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp -HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 4677888898877 6999999999999999998876 47899999998875 6999999999999999999874 5
Q ss_pred HHHHHHHHHHc
Q 009385 507 AANYANFLWNT 517 (536)
Q Consensus 507 l~NyA~~L~el 517 (536)
++..|..++..
T Consensus 82 ~Y~~g~~~~~~ 92 (203)
T PF13525_consen 82 LYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66677666554
No 176
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.98 E-value=0.0047 Score=68.53 Aligned_cols=111 Identities=22% Similarity=0.215 Sum_probs=91.1
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
..|++++|+.+..+||+..|..+++|...|.++- ..|++++|.++++.|-.+|+.|-..-...+..+.+ .|+.++|++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR-a~~~e~A~~ 283 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR-AGRIEEAEK 283 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-CCCHHHHHH
Confidence 3489999999999999999999999999999987 69999999999999999999999998888877765 579999999
Q ss_pred HHHHHHHhC--CCC-------HHHHHHHHHHHHHcCCCcccc
Q 009385 492 TFLEAISAD--PTN-------SYYAANYANFLWNTGGEDTCF 524 (536)
Q Consensus 492 ~feKALeLD--PdN-------peal~NyA~~L~elGr~E~cl 524 (536)
.+..-.+-+ |.. .++....|..+.+.|++..++
T Consensus 284 ~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 284 TASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 998887655 221 123345677777777654433
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.98 E-value=0.0024 Score=64.80 Aligned_cols=86 Identities=20% Similarity=0.301 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009385 435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFL 514 (536)
Q Consensus 435 eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L 514 (536)
.+|..|.+++. ..+..+.|...|++|++..+-+.++|..+|.+-+...++.+.|...|+++++.-|.++.++..|..+|
T Consensus 2 ~v~i~~m~~~~-r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMR-RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 46778888877 45669999999999997667788999999988777667888899999999999999999999999999
Q ss_pred HHcCCCc
Q 009385 515 WNTGGED 521 (536)
Q Consensus 515 ~elGr~E 521 (536)
...|+.+
T Consensus 81 ~~~~d~~ 87 (280)
T PF05843_consen 81 IKLNDIN 87 (280)
T ss_dssp HHTT-HH
T ss_pred HHhCcHH
Confidence 9999753
No 178
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.96 E-value=0.01 Score=63.70 Aligned_cols=81 Identities=25% Similarity=0.304 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
+++..=++..++.++..|+++.++..+|++++ ..+.+.+|..+|+.|+...|. +..+..+|.++-.. |+..+|.+.+
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~-k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~-g~~~~A~~~r 384 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL-KNKLWGKASEALEAALKLRPS-ASDYAELADALDQL-GEPEEAEQVR 384 (400)
T ss_pred CCchHHHHHHHHHHHhCCCChhHHHHHHHHHH-HhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHc-CChHHHHHHH
Confidence 34444444444555555555555555554444 344455555555555544443 22233444444332 3455555555
Q ss_pred HHHH
Q 009385 494 LEAI 497 (536)
Q Consensus 494 eKAL 497 (536)
++++
T Consensus 385 ~e~L 388 (400)
T COG3071 385 REAL 388 (400)
T ss_pred HHHH
Confidence 5544
No 179
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.91 E-value=0.0049 Score=58.31 Aligned_cols=82 Identities=22% Similarity=0.187 Sum_probs=69.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH
Q 009385 441 AQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNS----YYAANYANFLWN 516 (536)
Q Consensus 441 A~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNp----eal~NyA~~L~e 516 (536)
|..+. ..|+++.|++.|.++|.+-|.++.+|+|-+..+.. .|+.++|.+-+.+|+++.-+-. +++...|.+|..
T Consensus 50 ~vala-E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALA-EAGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHH-hccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 44555 47999999999999999999999999999998765 5799999999999999976554 356778899999
Q ss_pred cCCCcccc
Q 009385 517 TGGEDTCF 524 (536)
Q Consensus 517 lGr~E~cl 524 (536)
.|+.|++.
T Consensus 128 ~g~dd~AR 135 (175)
T KOG4555|consen 128 LGNDDAAR 135 (175)
T ss_pred hCchHHHH
Confidence 99876543
No 180
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.90 E-value=0.00087 Score=70.40 Aligned_cols=66 Identities=21% Similarity=0.349 Sum_probs=60.2
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385 447 VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANF 513 (536)
Q Consensus 447 ~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~ 513 (536)
..|+.++|...|+.|+.++|+|++++..+|.|.-+ .++.-+|-.||-+|+.++|.|.+++.|.+..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 58999999999999999999999999999998765 4699999999999999999999998886643
No 181
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.80 E-value=0.011 Score=67.38 Aligned_cols=109 Identities=18% Similarity=0.121 Sum_probs=82.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDP-----LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD------AESFSKYASFLWR 481 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~-----eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd------aeAL~nLG~~L~e 481 (536)
.|++++|..+++++++..|... .++.++|.+++ ..|++++|+.++++++...... ..++.++|.+++.
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 3799999999999999655432 35566777766 6899999999999999864322 2456778887776
Q ss_pred hcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCCccc
Q 009385 482 VRNDLWAAEETFLEAISADPT--------NSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 482 ~~GD~eEAee~feKALeLDPd--------Npeal~NyA~~L~elGr~E~c 523 (536)
.|++++|+.++++++++... ....+..+|.+++..|+.+.+
T Consensus 544 -~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 592 (903)
T PRK04841 544 -QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEA 592 (903)
T ss_pred -CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 57999999999999986221 223455788899999987654
No 182
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.79 E-value=0.0085 Score=66.14 Aligned_cols=103 Identities=17% Similarity=0.094 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---------------------C----
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP---------------------D---- 468 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd---------------------d---- 468 (536)
.+..+-+++.++||+++|+.+.+|.-||. +...-..+|+++|+||++.... +
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAE---EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAE---EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhccc---ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 57777777888888888888888876663 2244567777777777764210 1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCC
Q 009385 469 AESFSKYASFLWRVRNDLWAAEETFLEAISADPT--NSYYAANYANFLWNTGGE 520 (536)
Q Consensus 469 aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPd--Npeal~NyA~~L~elGr~ 520 (536)
..+...||.++++. |+.+||++.|+..++..|. +-.++.|+...|.+++++
T Consensus 259 ~y~KrRLAmCarkl-Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 259 VYAKRRLAMCARKL-GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY 311 (539)
T ss_pred hhhHHHHHHHHHHh-CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence 22345667777664 5888888888888887765 345778888888888865
No 183
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.76 E-value=0.012 Score=63.10 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=87.4
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
+-+++++|.+..+.+++..-+.. +..-++.+ .-+|...=++..++.++.+|+++..+..||.+++.. +.+.+|..
T Consensus 275 ~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l---~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~-~~w~kA~~ 349 (400)
T COG3071 275 RLGDHDEAQEIIEDALKRQWDPR-LCRLIPRL---RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKN-KLWGKASE 349 (400)
T ss_pred HcCChHHHHHHHHHHHHhccChh-HHHHHhhc---CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHh-hHHHHHHH
Confidence 45899999999999999876544 44445532 468999999999999999999999999999988764 69999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 492 TFLEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 492 ~feKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
+|+.|++..|+.. .+..+|+++-.+|+.+
T Consensus 350 ~leaAl~~~~s~~-~~~~la~~~~~~g~~~ 378 (400)
T COG3071 350 ALEAALKLRPSAS-DYAELADALDQLGEPE 378 (400)
T ss_pred HHHHHHhcCCChh-hHHHHHHHHHHcCChH
Confidence 9999999988754 4677999999999753
No 184
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.74 E-value=0.011 Score=55.67 Aligned_cols=83 Identities=16% Similarity=0.064 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---H
Q 009385 434 PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA---ESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYY---A 507 (536)
Q Consensus 434 ~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda---eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpea---l 507 (536)
+..+++-|.-.. ..|+|++|++.|+......|... .+...++..++.. +++++|+..+++-|++.|+++.+ +
T Consensus 10 ~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~-~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 10 PQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ-GDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred HHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 456777787666 58999999999999999998875 6788999999875 69999999999999999999853 5
Q ss_pred HHHHHHHHHcC
Q 009385 508 ANYANFLWNTG 518 (536)
Q Consensus 508 ~NyA~~L~elG 518 (536)
+..|...+++.
T Consensus 88 Y~~gL~~~~~~ 98 (142)
T PF13512_consen 88 YMRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHHh
Confidence 55555555443
No 185
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.72 E-value=0.057 Score=48.46 Aligned_cols=62 Identities=24% Similarity=0.238 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009385 435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAIS 498 (536)
Q Consensus 435 eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALe 498 (536)
.++..++..+. ..|++++|+..+++++.++|.|-.++..+-.++... |+..+|+..|++..+
T Consensus 63 ~~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~-g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALL-EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQ-GRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHT-T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 46666776666 689999999999999999999999999998888764 699999999998755
No 186
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.62 E-value=0.003 Score=63.87 Aligned_cols=74 Identities=26% Similarity=0.279 Sum_probs=65.1
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 447 VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 447 ~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
..|=.+-|.-.|.++|.+.|+-+++++.+|..+.. .|+++.|.+.|+..+++||.+-.++.|.|..++--|+++
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~-a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh-cccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence 45666677788999999999999999999987765 579999999999999999999999999999888888763
No 187
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.59 E-value=0.043 Score=65.75 Aligned_cols=108 Identities=15% Similarity=0.048 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385 414 ADYFRTELLYQTGLAQE-PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV--EPPDAESFSKYASFLWRVRNDLWAAE 490 (536)
Q Consensus 414 gdyeeAee~YqKALeLd-Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL--DPddaeAL~nLG~~L~e~~GD~eEAe 490 (536)
|++++|.+.|++..+.+ +.+...|+.+...|. ..|++++|.+.|++..+. .|+ ...|..+...+.. .|++++|.
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~-k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k-~G~~eeA~ 669 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS-QKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGH-AGDLDKAF 669 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-CCCHHHHH
Confidence 45555555555555443 223444444444433 345555555555555443 232 3344444444443 24555555
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCcccc
Q 009385 491 ETFLEAISAD-PTNSYYAANYANFLWNTGGEDTCF 524 (536)
Q Consensus 491 e~feKALeLD-PdNpeal~NyA~~L~elGr~E~cl 524 (536)
++|++..+.. +-+...+..+...|.+.|+.+++.
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 5555555532 223344555555555555555443
No 188
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.59 E-value=0.004 Score=66.38 Aligned_cols=93 Identities=18% Similarity=0.161 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385 437 LANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWN 516 (536)
Q Consensus 437 L~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~e 516 (536)
+-..|.-|+ .+|.|++|+.||-+++.++|.|+-.+.|.|..|+.++ ++..|+.-...|+.+|-.+..+|...+.+-..
T Consensus 100 iKE~GN~yF-KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K-~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 100 IKERGNTYF-KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQK-SFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHHhhhhhh-hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHH-HHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344677777 6999999999999999999999999999999888875 89999999999999999888777766666655
Q ss_pred cC-------CCccccCCCCCCC
Q 009385 517 TG-------GEDTCFPLSSPDS 531 (536)
Q Consensus 517 lG-------r~E~clpl~~~~~ 531 (536)
+| ++|..+.|++..+
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccH
Confidence 55 4566777766543
No 189
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.56 E-value=0.0041 Score=42.70 Aligned_cols=30 Identities=30% Similarity=0.552 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 009385 436 LLANYAQFLYIVAHDYDRAEEYFKRAIAVEP 466 (536)
Q Consensus 436 AL~NLA~lL~e~~GD~deAEe~FeKALeLDP 466 (536)
+|+.+|.++. ..|++++|.++|+++++++|
T Consensus 3 ~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYE-QLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHH-HTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence 4444554444 34555555555555555555
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.53 E-value=0.0061 Score=61.49 Aligned_cols=88 Identities=22% Similarity=0.209 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHH
Q 009385 415 DYFRTELLYQTGLAQE--PND----PLLLANYAQFLYIVA-HDYDRAEEYFKRAIAVEP--PD----AESFSKYASFLWR 481 (536)
Q Consensus 415 dyeeAee~YqKALeLd--Pdn----~eAL~NLA~lL~e~~-GD~deAEe~FeKALeLDP--dd----aeAL~nLG~~L~e 481 (536)
++.+|+.+|++|+.+. -++ ..++.++|.++. .. +++++|.++|++|+++-- +. ...+..+|.++..
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye-~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE-EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC-CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 5555666666665552 111 234455555444 23 566666666666665521 11 1234455555544
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCH
Q 009385 482 VRNDLWAAEETFLEAISADPTNS 504 (536)
Q Consensus 482 ~~GD~eEAee~feKALeLDPdNp 504 (536)
. |+|++|++.|++.....-+++
T Consensus 168 l-~~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 168 L-GRYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp T-T-HHHHHHHHHHHHHTCCCHC
T ss_pred h-CCHHHHHHHHHHHHHHhhccc
Confidence 3 356666666666655544433
No 191
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.49 E-value=0.021 Score=65.21 Aligned_cols=109 Identities=16% Similarity=0.093 Sum_probs=82.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPND------PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP--------DAESFSKYASF 478 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn------~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd--------daeAL~nLG~~ 478 (536)
.|++++|..+|++++...... ..++.++|.+++ ..|++++|+.++++++.+-.. ....+..+|.+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF-AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 389999999999999764321 245667888877 689999999999999986321 23446677888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCCccc
Q 009385 479 LWRVRNDLWAAEETFLEAISADPT-----NSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 479 L~e~~GD~eEAee~feKALeLDPd-----Npeal~NyA~~L~elGr~E~c 523 (536)
++.. |++++|..++++++.+... .+..+.+++.++...|+.+.+
T Consensus 583 ~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 631 (903)
T PRK04841 583 LWEW-ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNA 631 (903)
T ss_pred HHHh-cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHH
Confidence 8775 7999999999999886432 234566788888899986544
No 192
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.47 E-value=0.064 Score=64.34 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=88.2
Q ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHH
Q 009385 413 YADYFRTELLYQTGLAQ--EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE-PPDAESFSKYASFLWRVRNDLWAA 489 (536)
Q Consensus 413 ~gdyeeAee~YqKALeL--dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD-PddaeAL~nLG~~L~e~~GD~eEA 489 (536)
.|++++|..+|.+..+. .|+ ...|..+...+. ..|++++|.++|++.++.. +.|...++.+...|.+. |++++|
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~-k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~-G~~eeA 703 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAG-HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA-KNWKKA 703 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCHHHH
Confidence 38999999999998887 564 667777777766 6899999999999999875 45678888888888764 699999
Q ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCccccCC
Q 009385 490 EETFLEAISA--DPTNSYYAANYANFLWNTGGEDTCFPL 526 (536)
Q Consensus 490 ee~feKALeL--DPdNpeal~NyA~~L~elGr~E~clpl 526 (536)
+++|++..+. .|+ ...+..+...|.+.|+.++++.+
T Consensus 704 ~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlel 741 (1060)
T PLN03218 704 LELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEV 741 (1060)
T ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999988764 554 45678888889999998877654
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.011 Score=61.29 Aligned_cols=105 Identities=21% Similarity=0.251 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hC--CCCHHHHHHHHHHHHHhcCCH
Q 009385 414 ADYFRTELLYQTGLAQE-PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIA----VE--PPDAESFSKYASFLWRVRNDL 486 (536)
Q Consensus 414 gdyeeAee~YqKALeLd-Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALe----LD--PddaeAL~nLG~~L~e~~GD~ 486 (536)
++|.-....|.+.++.+ |.++.+...+|.+.. ..||.+.|+.+|++.-+ ++ -++..++.+.+.++.- .+++
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M-Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg-~nn~ 268 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM-QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG-QNNF 268 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec-ccch
Confidence 67777888888888887 667888888888766 47888888888884332 22 2334456666655543 3578
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385 487 WAAEETFLEAISADPTNSYYAANYANFLWNTGGE 520 (536)
Q Consensus 487 eEAee~feKALeLDPdNpeal~NyA~~L~elGr~ 520 (536)
.+|...|.+.++.||.++.+..|-|.++.-+|+.
T Consensus 269 a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 269 AEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred HHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 8888888888888888888888888888888865
No 194
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.43 E-value=0.022 Score=64.11 Aligned_cols=105 Identities=15% Similarity=0.037 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV--EPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL--DPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
|++++|.+.|++..+ | |...|+.+...|. ..|+.++|++.|++.++. .|+. ..+..+-..+.+ .|++++|.+
T Consensus 374 G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~-~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~-~g~~~~a~~ 447 (697)
T PLN03081 374 GRMEDARNVFDRMPR--K-NLISWNALIAGYG-NHGRGTKAVEMFERMIAEGVAPNH-VTFLAVLSACRY-SGLSEQGWE 447 (697)
T ss_pred CCHHHHHHHHHhCCC--C-CeeeHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHhc-CCcHHHHHH
Confidence 556666666655432 2 4445555554444 456666666666665543 2432 223333333333 346666666
Q ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCCccccC
Q 009385 492 TFLEAISA---DPTNSYYAANYANFLWNTGGEDTCFP 525 (536)
Q Consensus 492 ~feKALeL---DPdNpeal~NyA~~L~elGr~E~clp 525 (536)
+|++..+. .|+ ...+..+...|.+.|+.++++.
T Consensus 448 ~f~~m~~~~g~~p~-~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 448 IFQSMSENHRIKPR-AMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred HHHHHHHhcCCCCC-ccchHhHHHHHHhcCCHHHHHH
Confidence 66666542 222 2344556666666666655543
No 195
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.37 E-value=0.0059 Score=41.91 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 009385 469 AESFSKYASFLWRVRNDLWAAEETFLEAISADPTN 503 (536)
Q Consensus 469 aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN 503 (536)
+.+++.+|.++.. .|++++|+.+|+++++++|+|
T Consensus 1 a~~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQ-LGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence 3678999998876 579999999999999999965
No 196
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.33 E-value=0.0063 Score=61.40 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQE-----PND-PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE--PPD----AESFSKYASFLWR 481 (536)
Q Consensus 414 gdyeeAee~YqKALeLd-----Pdn-~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD--Pdd----aeAL~nLG~~L~e 481 (536)
+++++|..+|.+|..+. +.+ ...+.+.+.++. ... +++|+.+|++|+++- -++ +..+.++|.++..
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~-~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~ 126 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGD-PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE 126 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhC-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 56666666666665552 222 455555555544 345 347777777777762 222 3567788876654
Q ss_pred hcCCHHHHHHHHHHHHHhC--CCCH----HHHHHHHHHHHHcCCCcccc
Q 009385 482 VRNDLWAAEETFLEAISAD--PTNS----YYAANYANFLWNTGGEDTCF 524 (536)
Q Consensus 482 ~~GD~eEAee~feKALeLD--PdNp----eal~NyA~~L~elGr~E~cl 524 (536)
..+++++|+++|++|+++- -+.+ ..+.++|.++..+|+++++.
T Consensus 127 ~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~ 175 (282)
T PF14938_consen 127 QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAI 175 (282)
T ss_dssp TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 3168999999999999862 2222 34678899999999876543
No 197
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.31 E-value=0.029 Score=61.28 Aligned_cols=106 Identities=24% Similarity=0.189 Sum_probs=87.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCCHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA----ESFSKYASFLWRVRNDLWA 488 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda----eAL~nLG~~L~e~~GD~eE 488 (536)
..+.+.|++.++..++..|+....++..|+++. ..|+.++|++.|++++.....-. -.++.+|..+..+ .++++
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~-~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ-HDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH-chHHH
Confidence 468999999999999999999999999999887 69999999999999996443332 3467788877665 59999
Q ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCC
Q 009385 489 AEETFLEAISADPT-NSYYAANYANFLWNTGGE 520 (536)
Q Consensus 489 Aee~feKALeLDPd-Npeal~NyA~~L~elGr~ 520 (536)
|..+|.+.++.+.- .+.+.+..|.++...|+.
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 99999999997654 344567788888888876
No 198
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.24 E-value=0.02 Score=64.50 Aligned_cols=98 Identities=15% Similarity=0.110 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPL-LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~e-AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
|+...|.+++++|+...|.... .+.|||+++. .-+-.-+|-..+.++|.+.-..+-.++.+|..+...+ +.++|++.
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~-~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~-~i~~a~~~ 698 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLI-HYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK-NISGALEA 698 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHH-HhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh-hhHHHHHH
Confidence 7999999999999999998664 4778999877 4678889999999999999888888999998877664 89999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHH
Q 009385 493 FLEAISADPTNSYYAANYANF 513 (536)
Q Consensus 493 feKALeLDPdNpeal~NyA~~ 513 (536)
|++|+.++|+++.+...+-.+
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHH
Confidence 999999999999886555443
No 199
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.026 Score=60.22 Aligned_cols=105 Identities=13% Similarity=0.044 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHhcCCHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV-EPPD---AESFSKYASFLWRVRNDLWAA 489 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL-DPdd---aeAL~nLG~~L~e~~GD~eEA 489 (536)
|++.+|...+.+.|.-.|.|..++.---.+++ ..|+.+.-...++|.+-. +|+- ..++..|+..|.+. |-|++|
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~-g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC-GIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh-ccchhH
Confidence 67778888888888888888877755444555 578888888888888876 5555 45566666666664 588888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385 490 EETFLEAISADPTNSYYAANYANFLWNTGGE 520 (536)
Q Consensus 490 ee~feKALeLDPdNpeal~NyA~~L~elGr~ 520 (536)
++.-++|++++|.+..+.+..|+++-..|+.
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~ 225 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRH 225 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchh
Confidence 8888888888888888888888888777764
No 200
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.20 E-value=0.086 Score=52.47 Aligned_cols=98 Identities=12% Similarity=0.120 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-
Q 009385 414 ADYFRTELLYQTGLAQEPND-PLLLANYAQFLYIVAH--------DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR- 483 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn-~eAL~NLA~lL~e~~G--------D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~- 483 (536)
.|+.+|..+|++|.+..-.. ..+.+++|.++. .| +...|...|++|-... ++.+..++|.++....
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCC
Confidence 58999999999999985444 344777887655 34 4458999999998877 8899999998775532
Q ss_pred --CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385 484 --NDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518 (536)
Q Consensus 484 --GD~eEAee~feKALeLDPdNpeal~NyA~~L~elG 518 (536)
.|+++|..+|.+|.+... ....++++ +++..|
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 389999999999999877 77888888 666666
No 201
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.027 Score=59.79 Aligned_cols=88 Identities=19% Similarity=0.219 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPND----PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA 489 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn----~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA 489 (536)
++|..|+..|.++|+.+-.| ..+|+|.|.+.+ ..|+|-.|+....+|+.++|.|..+++.-|.++++.. ++.+|
T Consensus 95 Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~-~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe-~~~~a 172 (390)
T KOG0551|consen 95 KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL-YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE-RFAEA 172 (390)
T ss_pred hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH-HHHHH
Confidence 68999999999999996554 456888887766 6899999999999999999999999999999999875 77777
Q ss_pred HHHHHHHHHhCCCC
Q 009385 490 EETFLEAISADPTN 503 (536)
Q Consensus 490 ee~feKALeLDPdN 503 (536)
..+.+..+.++-+.
T Consensus 173 ~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 173 VNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHhhhhhhhHHH
Confidence 77777666655443
No 202
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.18 E-value=0.0064 Score=64.12 Aligned_cols=92 Identities=13% Similarity=0.222 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009385 419 TELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAIS 498 (536)
Q Consensus 419 Aee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALe 498 (536)
-.-.|.++-..-|+|+..|..|+.... ..+.+.+-...|-+++..+|.|++.|...+.+-+...++++.+...|.++++
T Consensus 92 ~~f~~~R~tnkff~D~k~w~~y~~Y~~-k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR 170 (435)
T COG5191 92 KIFELYRSTNKFFNDPKIWSQYAAYVI-KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR 170 (435)
T ss_pred eeEeeehhhhcCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc
Confidence 334566777789999999999985444 6789999999999999999999999988665555556799999999999999
Q ss_pred hCCCCHHHHHHHH
Q 009385 499 ADPTNSYYAANYA 511 (536)
Q Consensus 499 LDPdNpeal~NyA 511 (536)
++|++|.++..|-
T Consensus 171 ~N~~~p~iw~eyf 183 (435)
T COG5191 171 MNSRSPRIWIEYF 183 (435)
T ss_pred cCCCCchHHHHHH
Confidence 9999998865543
No 203
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.014 Score=65.33 Aligned_cols=103 Identities=18% Similarity=0.118 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-HHH--HHHHHHHHHHhcCCHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD-AES--FSKYASFLWRVRNDLWAAE 490 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd-aeA--L~nLG~~L~e~~GD~eEAe 490 (536)
++|++|.+...+.|...|++..++.---..+. ..+.|++|. +.++.++-+ ... .+.-++++|+. +..++|+
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValI-q~~ky~~AL----k~ikk~~~~~~~~~~~fEKAYc~Yrl-nk~Deal 99 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALI-QLDKYEDAL----KLIKKNGALLVINSFFFEKAYCEYRL-NKLDEAL 99 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhh-hhhHHHHHH----HHHHhcchhhhcchhhHHHHHHHHHc-ccHHHHH
Confidence 45555555555555555555554433222222 234444444 222222211 000 02334444443 3455555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385 491 ETFLEAISADPTNSYYAANYANFLWNTGGEDTCFP 525 (536)
Q Consensus 491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~clp 525 (536)
..++ -+|+.+...+.-.|.+++++|++++|+.
T Consensus 100 k~~~---~~~~~~~~ll~L~AQvlYrl~~ydeald 131 (652)
T KOG2376|consen 100 KTLK---GLDRLDDKLLELRAQVLYRLERYDEALD 131 (652)
T ss_pred HHHh---cccccchHHHHHHHHHHHHHhhHHHHHH
Confidence 5554 3344444444455555555555555543
No 204
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.032 Score=58.90 Aligned_cols=111 Identities=19% Similarity=0.130 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHH----------------HH--------------H
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKR----------------AI--------------A 463 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeK----------------AL--------------e 463 (536)
.+|..|..+|++.-.+.|......+-+|+.+| ..+.+.+|...... || +
T Consensus 58 Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY-~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLve 136 (459)
T KOG4340|consen 58 QEFALAAECYEQLGQLHPELEQYRLYQAQSLY-KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVE 136 (459)
T ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHH
Confidence 68999999999999999998888888899888 47877777655322 22 2
Q ss_pred hCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccCC
Q 009385 464 VEP--PDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFPL 526 (536)
Q Consensus 464 LDP--ddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~clpl 526 (536)
.-| ++++..++.|.++++ .|++++|.+-|+.|++..--+|-..+|+|.+.+..|+++.++.+
T Consensus 137 Qlp~en~Ad~~in~gCllyk-egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~ 200 (459)
T KOG4340|consen 137 QLPSENEADGQINLGCLLYK-EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKH 200 (459)
T ss_pred hccCCCccchhccchheeec-cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHH
Confidence 224 678889999988886 46999999999999999999999999999999999988766643
No 205
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.07 E-value=0.036 Score=64.54 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=90.8
Q ss_pred HHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009385 395 ETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSK 474 (536)
Q Consensus 395 ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~n 474 (536)
....|.+.||.-.+ |-++|.+|.+...+.++..|+-..+..--|..+. .+|+.++|..+++..-...++|-..+..
T Consensus 7 a~~err~rpi~d~l---d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~ 82 (932)
T KOG2053|consen 7 AMSERRLRPIYDLL---DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGTDDLTLQF 82 (932)
T ss_pred ccHHHHHhHHHHHh---hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCCchHHHHH
Confidence 34455566664333 3479999999999999999998888888887777 6899999998888888888888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385 475 YASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518 (536)
Q Consensus 475 LG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elG 518 (536)
+-.+|.+. +++++|..+|++|+..+|+ -+.+..|=.++.+.+
T Consensus 83 l~~~y~d~-~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 83 LQNVYRDL-GKLDEAVHLYERANQKYPS-EELLYHLFMAYVREK 124 (932)
T ss_pred HHHHHHHH-hhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHH
Confidence 88887775 5899999999999999998 554444444444433
No 206
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.071 Score=55.29 Aligned_cols=92 Identities=16% Similarity=0.264 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
+.+.+|.-+|+..-+..|-.+.++++.|.+.. .++++++|+..++.||..++++++.+.|+-+.....+.+.+--.++.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 46888999999988878888999998887665 68999999999999999999999999999876666666667777788
Q ss_pred HHHHHhCCCCHHH
Q 009385 494 LEAISADPTNSYY 506 (536)
Q Consensus 494 eKALeLDPdNpea 506 (536)
.+.....|.++.+
T Consensus 266 ~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 266 SQLKLSHPEHPFV 278 (299)
T ss_pred HHHHhcCCcchHH
Confidence 8888888988865
No 207
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.037 Score=57.79 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHhcCCHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYA--SFLWRVRNDLWAAEE 491 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG--~~L~e~~GD~eEAee 491 (536)
+++.+|...|..++..+|++.++...|+..+. ..|+.+.|...+...=.-..++ .++..-+ .++-+.. +..+. .
T Consensus 148 e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l-~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~ll~qaa-~~~~~-~ 223 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPENSEAKLLLAECLL-AAGDVEAAQAILAALPLQAQDK-AAHGLQAQIELLEQAA-ATPEI-Q 223 (304)
T ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHH-HcCChHHHHHHHHhCcccchhh-HHHHHHHHHHHHHHHh-cCCCH-H
Confidence 79999999999999999999999999999877 6899988888766532211111 1111111 1222211 22221 2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385 492 TFLEAISADPTNSYYAANYANFLWNTGGEDTCF 524 (536)
Q Consensus 492 ~feKALeLDPdNpeal~NyA~~L~elGr~E~cl 524 (536)
-+++.+..||+|.++.+.+|..|...|+.|.++
T Consensus 224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Al 256 (304)
T COG3118 224 DLQRRLAADPDDVEAALALADQLHLVGRNEAAL 256 (304)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 356666778888888888888888888776554
No 208
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.87 E-value=0.0029 Score=66.96 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=77.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
.|+++.|++.|-+||.++|....+|.+.|.++. ..+....|++.+..|++++|+.+..|-.-|..... .|++++|..+
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl-lg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL-LGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceee-eccCCchhhhhhhhhhccCcccccccchhhHHHHH-hhchHHHHHH
Confidence 378999999999999999999999999999877 58999999999999999999999877666654443 4699999999
Q ss_pred HHHHHHhCCC
Q 009385 493 FLEAISADPT 502 (536)
Q Consensus 493 feKALeLDPd 502 (536)
++.|+++|=+
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 9999998644
No 209
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.011 Score=60.31 Aligned_cols=81 Identities=21% Similarity=0.309 Sum_probs=71.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385 441 AQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE 520 (536)
Q Consensus 441 A~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~ 520 (536)
|.-++ ..+.|+.|+.+|-+||.++|..+..+.|-+..++.. ++++.+..-.++|++++|+.+..++.+|..+.....+
T Consensus 17 gnk~f-~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~-~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 17 GNKCF-IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKL-KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccccc-chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh-hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 33344 457899999999999999999999999999888875 5999999999999999999999999999999988877
Q ss_pred ccc
Q 009385 521 DTC 523 (536)
Q Consensus 521 E~c 523 (536)
+.+
T Consensus 95 ~ea 97 (284)
T KOG4642|consen 95 DEA 97 (284)
T ss_pred cHH
Confidence 544
No 210
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.83 E-value=0.1 Score=63.46 Aligned_cols=105 Identities=22% Similarity=0.245 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP--DAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd--daeAL~nLG~~L~e~~GD~eEAee 491 (536)
+.+++|.++|+..++.--+-...|..||.++. .+.+-++|...+.+||+.-|. |.+.....|.+-+. .||.+.+..
T Consensus 1544 ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl-~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~GDaeRGRt 1621 (1710)
T KOG1070|consen 1544 EKNDEADELLRLMLKKFGQTRKVWIMYADFLL-RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-YGDAERGRT 1621 (1710)
T ss_pred hcchhHHHHHHHHHHHhcchhhHHHHHHHHHh-cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-cCCchhhHH
Confidence 68889999999999998888999999999888 567778999999999999998 88889999987776 479999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385 492 TFLEAISADPTNSYYAANYANFLWNTGGE 520 (536)
Q Consensus 492 ~feKALeLDPdNpeal~NyA~~L~elGr~ 520 (536)
+|+-.+...|.-.+.|.-|...-...|+.
T Consensus 1622 lfEgll~ayPKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1622 LFEGLLSAYPKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred HHHHHHhhCccchhHHHHHHHHHHccCCH
Confidence 99999999999999888888877777653
No 211
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.63 E-value=0.02 Score=35.62 Aligned_cols=31 Identities=32% Similarity=0.570 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 009385 436 LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP 467 (536)
Q Consensus 436 AL~NLA~lL~e~~GD~deAEe~FeKALeLDPd 467 (536)
++.++|.++. ..+++++|+.+|+++++++|+
T Consensus 3 ~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYL-KLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHH-HHhhHHHHHHHHHHHHccCCC
Confidence 3444454444 345555555555555555443
No 212
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.52 E-value=0.054 Score=60.52 Aligned_cols=90 Identities=18% Similarity=0.065 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI--VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e--~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
.....|+..|.+++...|+...+|-|+|.++.+ ..||.-.|+.....|+++||-...+|+.|+.+|.+.. ++.+|+.
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~-r~~eal~ 466 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT-RYLEALS 466 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh-hHHHhhh
Confidence 467789999999999999999999999987763 2467789999999999999999999999999998874 8999999
Q ss_pred HHHHHHHhCCCCH
Q 009385 492 TFLEAISADPTNS 504 (536)
Q Consensus 492 ~feKALeLDPdNp 504 (536)
+...+.-..|.+.
T Consensus 467 ~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 467 CHWALQMSFPTDV 479 (758)
T ss_pred hHHHHhhcCchhh
Confidence 9888888888554
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.50 E-value=0.13 Score=55.33 Aligned_cols=107 Identities=23% Similarity=0.217 Sum_probs=84.1
Q ss_pred ccCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHH---hCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHh-
Q 009385 412 DYADYFRTELLYQTGLAQ----EPNDPLLLANYAQFLYIV---AHDYDRAEEYFKR-AIAVEPPDAESFSKYASFLWRV- 482 (536)
Q Consensus 412 d~gdyeeAee~YqKALeL----dPdn~eAL~NLA~lL~e~---~GD~deAEe~FeK-ALeLDPddaeAL~nLG~~L~e~- 482 (536)
|-.+|+.-+.+.+..=.+ -++.+.+.+.||.++. . .||.++|+..+.. ....++.+++.+..+|.++-+.
T Consensus 153 diqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALn-Rrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~ 231 (374)
T PF13281_consen 153 DIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALN-RRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLF 231 (374)
T ss_pred hhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHh-hcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 447888777777766665 5667788888998776 5 7999999999999 5556688999999999876432
Q ss_pred -------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385 483 -------RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE 520 (536)
Q Consensus 483 -------~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~ 520 (536)
...+++|+.+|.+|.+++|+ ...--|++.+|.-.|..
T Consensus 232 ~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 232 LESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHD 275 (374)
T ss_pred HHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCc
Confidence 12478999999999999964 45567999999888863
No 214
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.30 E-value=0.03 Score=40.01 Aligned_cols=25 Identities=32% Similarity=0.635 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Q 009385 437 LANYAQFLYIVAHDYDRAEEYFKRAI 462 (536)
Q Consensus 437 L~NLA~lL~e~~GD~deAEe~FeKAL 462 (536)
|.++|.++. ..|++++|+++|+++|
T Consensus 2 l~~Lg~~~~-~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYR-QQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHH-HCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 556666555 4666666666666644
No 215
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.26 E-value=0.028 Score=60.51 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----C------HHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDP------LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP----D------AESFSKYAS 477 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~------eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd----d------aeAL~nLG~ 477 (536)
+-|.++++.|++|++..-++. .++..+|.++- ..+|+++|.-+..+|+++--. | ..+++.+++
T Consensus 136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~-~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA-QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH-HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence 578889999999998855443 34666787665 579999999999999886422 2 346677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCCccccCCCCC
Q 009385 478 FLWRVRNDLWAAEETFLEAISAD------PTNSYYAANYANFLWNTGGEDTCFPLSSP 529 (536)
Q Consensus 478 ~L~e~~GD~eEAee~feKALeLD------PdNpeal~NyA~~L~elGr~E~clpl~~~ 529 (536)
.|.. .|++-.|.++.++|.++. |-.+....-+|.+|.+.|+.|.+|+.+|.
T Consensus 215 alR~-~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 215 ALRL-LGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHH-hcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 6654 578999999999988763 12223356788999999999999988764
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.19 E-value=0.029 Score=61.20 Aligned_cols=109 Identities=10% Similarity=0.045 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCC--HHHHHHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPND------PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE----PPD--AESFSKYASFLWR 481 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn------~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD----Pdd--aeAL~nLG~~L~e 481 (536)
|+|++|+.+-+.-|++.-.. ..++.|+|..+. ..|+++.|.++|++++.+. -.- +..-+.||..|..
T Consensus 209 Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi-flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl 287 (639)
T KOG1130|consen 209 GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI-FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL 287 (639)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh-hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH
Confidence 89999999888777764332 468999999877 6899999999999876553 222 3446678888876
Q ss_pred hcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCCcccc
Q 009385 482 VRNDLWAAEETFLEAISADPT------NSYYAANYANFLWNTGGEDTCF 524 (536)
Q Consensus 482 ~~GD~eEAee~feKALeLDPd------Npeal~NyA~~L~elGr~E~cl 524 (536)
.+ ++++|++|+++=+++.-. ...+++.+|+.+..+|+.++++
T Consensus 288 l~-e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl 335 (639)
T KOG1130|consen 288 LK-EVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL 335 (639)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence 54 899999999997765332 2345788999998888766544
No 217
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.18 E-value=0.029 Score=61.17 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=80.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHh
Q 009385 413 YADYFRTELLYQTGLAQEPNDPL----LLANYAQFLYIVAHDYDRAEEYFKRAIAV------EPPDAESFSKYASFLWRV 482 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~e----AL~NLA~lL~e~~GD~deAEe~FeKALeL------DPddaeAL~nLG~~L~e~ 482 (536)
.|++...+.+|++||+.--+|.. +|..||.+|+ ..+||++|.+|-..=|.+ .-..+.+-.|||..+-.
T Consensus 30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyf-yL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv- 107 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYF-YLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKV- 107 (639)
T ss_pred ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhh-hHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhh-
Confidence 38999999999999999888754 5667888887 689999999985543332 33445667789998754
Q ss_pred cCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCC
Q 009385 483 RNDLWAAEETFLEAISADPT------NSYYAANYANFLWNTGGE 520 (536)
Q Consensus 483 ~GD~eEAee~feKALeLDPd------Npeal~NyA~~L~elGr~ 520 (536)
+|.|++|+.+..+-+.+.-. -..+++|+|++|...|+.
T Consensus 108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~ 151 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKC 151 (639)
T ss_pred hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccc
Confidence 68999999999886665321 234689999999998864
No 218
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.17 E-value=0.037 Score=34.37 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 009385 470 ESFSKYASFLWRVRNDLWAAEETFLEAISADPTN 503 (536)
Q Consensus 470 eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN 503 (536)
.++.++|.++... +++++|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~-~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKL-GDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHH-hhHHHHHHHHHHHHccCCCC
Confidence 5678999888775 69999999999999999864
No 219
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.15 E-value=0.043 Score=36.94 Aligned_cols=31 Identities=42% Similarity=0.581 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 009385 436 LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP 467 (536)
Q Consensus 436 AL~NLA~lL~e~~GD~deAEe~FeKALeLDPd 467 (536)
+++++|.++. ..|++++|.++|++.++..|+
T Consensus 2 a~~~~a~~~~-~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYY-KLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHH-HHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHH-HccCHHHHHHHHHHHHHHCcC
Confidence 4455555544 355555555555555555554
No 220
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.10 E-value=0.37 Score=50.07 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=70.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385 421 LLYQTGLAQEPNDPLLLANYAQFLYIVAH-----------DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA 489 (536)
Q Consensus 421 e~YqKALeLdPdn~eAL~NLA~lL~e~~G-----------D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA 489 (536)
.-|.+.++.+|+|..+|..|..+--.... -.+.-+.+|++||+.+|++...+..|=....+. -+.++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~-~~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV-WDSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CCHHHH
Confidence 46788999999999999888865332111 146777889999999999998877776655554 378888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009385 490 EETFLEAISADPTNSYYAANYANFLW 515 (536)
Q Consensus 490 ee~feKALeLDPdNpeal~NyA~~L~ 515 (536)
.+-+++++..+|+++..+..|-.+..
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q 110 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQ 110 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 88999999999999887666555443
No 221
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.01 E-value=0.28 Score=42.38 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 009385 419 TELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD 468 (536)
Q Consensus 419 Aee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd 468 (536)
.+..++++++.+|+|..+.+.+|..+. ..|++++|.+.+..+++.+|++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccc
Confidence 456788999999999999999998877 6899999999999999999877
No 222
>PLN03077 Protein ECB2; Provisional
Probab=95.00 E-value=0.14 Score=59.06 Aligned_cols=102 Identities=15% Similarity=0.035 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIA--VEPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALe--LDPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
|++++|...|... +.|...|+.+...+. ..|+.++|++.|++.++ +.|+.......+ ..+.+ .|++++|..
T Consensus 538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~-~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-~a~~~-~g~v~ea~~ 610 (857)
T PLN03077 538 GRMNYAWNQFNSH----EKDVVSWNILLTGYV-AHGKGSMAVELFNRMVESGVNPDEVTFISLL-CACSR-SGMVTQGLE 610 (857)
T ss_pred CCHHHHHHHHHhc----CCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCcccHHHHH-HHHhh-cChHHHHHH
Confidence 6667777776664 446666666665555 46777777777777665 345544433333 23433 357777777
Q ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCCccc
Q 009385 492 TFLEAISA---DPTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 492 ~feKALeL---DPdNpeal~NyA~~L~elGr~E~c 523 (536)
+|++..+. .|+ ...+..+..+|.+.|+.+++
T Consensus 611 ~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 611 YFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHH
Confidence 77777643 232 34556666777777765443
No 223
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.93 E-value=0.17 Score=56.15 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPND----PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA 489 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn----~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA 489 (536)
.|.+.+.+.|+.+|++-|.- +.+|..||.+.. .+.++..|.+.+-.||..-|.+-.--... .+-... ++++..
T Consensus 380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI-Rq~~l~~ARkiLG~AIG~cPK~KlFk~YI-elElqL-~efDRc 456 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI-RQLNLTGARKILGNAIGKCPKDKLFKGYI-ELELQL-REFDRC 456 (677)
T ss_pred hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH-HHcccHHHHHHHHHHhccCCchhHHHHHH-HHHHHH-hhHHHH
Confidence 68899999999999998874 567777888766 57888888888888888888875432222 222233 478888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385 490 EETFLEAISADPTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 490 ee~feKALeLDPdNpeal~NyA~~L~elGr~E~c 523 (536)
..+|++-|+-+|.|..++..||.+-..+|+.|.+
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHH
Confidence 8888888888888888888888888888876643
No 224
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.93 E-value=0.089 Score=53.07 Aligned_cols=82 Identities=20% Similarity=0.224 Sum_probs=68.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009385 441 AQFLYIVAHDYDRAEEYFKRAIAVEPPDAE-----SFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLW 515 (536)
Q Consensus 441 A~lL~e~~GD~deAEe~FeKALeLDPddae-----AL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~ 515 (536)
|.-++ ..|+|++|..-|..||++-|.-.. .|.|-|.++..+ +..+.|+.-..+||+++|.+-.++...|.+|-
T Consensus 102 GN~~F-~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl-~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELF-KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL-RKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhh-hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh-hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 44456 589999999999999999998753 456777777765 48999999999999999999999999999998
Q ss_pred HcCCCcccc
Q 009385 516 NTGGEDTCF 524 (536)
Q Consensus 516 elGr~E~cl 524 (536)
++.++|.++
T Consensus 180 k~ek~eeal 188 (271)
T KOG4234|consen 180 KMEKYEEAL 188 (271)
T ss_pred hhhhHHHHH
Confidence 888776554
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.87 E-value=0.34 Score=52.20 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHH---H-----hCCHHHHHHHHHHHHHhCCCC
Q 009385 413 YADYFRTELLYQT-GLAQEPNDPLLLANYAQFLYI---V-----AHDYDRAEEYFKRAIAVEPPD 468 (536)
Q Consensus 413 ~gdyeeAee~YqK-ALeLdPdn~eAL~NLA~lL~e---~-----~GD~deAEe~FeKALeLDPdd 468 (536)
.|+.++|+..+.. ....++.+++.+--+|+++-. . ...+++|+..|+++.+++|+.
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 3666666666666 344455566666666665321 0 113566666666666666543
No 226
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=0.17 Score=57.02 Aligned_cols=105 Identities=20% Similarity=0.138 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--------------------------
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP-------------------------- 467 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd-------------------------- 467 (536)
+..++|+..++ -+++.+..++.-.|+++| ..++|++|...|+..++-+-+
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlY-rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~ 168 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLY-RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP 168 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence 55666666666 557777878888999999 689999999999988543322
Q ss_pred -----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCC-H-------HHHHHHHHHHHHcCCCccc
Q 009385 468 -----DAESFSKYASFLWRVRNDLWAAEETFLEAISA-------DPTN-S-------YYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 468 -----daeAL~nLG~~L~e~~GD~eEAee~feKALeL-------DPdN-p-------eal~NyA~~L~elGr~E~c 523 (536)
.-+.++|.|.++... |+|.+|++.+++|+++ +-.+ - .+...++.+|..+|+.+++
T Consensus 169 ~v~e~syel~yN~Ac~~i~~-gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIEN-GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred CCCcchHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 335667888777764 6999999999999432 1122 1 2577899999999986543
No 227
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.84 E-value=0.39 Score=47.82 Aligned_cols=99 Identities=14% Similarity=0.016 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHh----cC-
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV---AHDYDRAEEYFKRAIAVEPPD-AESFSKYASFLWRV----RN- 484 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~---~GD~deAEe~FeKALeLDPdd-aeAL~nLG~~L~e~----~G- 484 (536)
.+..+|..+|+ ...+..++.+.++||.++..- ..|+.+|..+|++|.+..-.. ..+...+|.++..- .-
T Consensus 91 ~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 91 RDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred ccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 57999999999 445677899999999887631 338999999999998775443 34588888766542 01
Q ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385 485 -DLWAAEETFLEAISADPTNSYYAANYANFLWN 516 (536)
Q Consensus 485 -D~eEAee~feKALeLDPdNpeal~NyA~~L~e 516 (536)
+..+|..+|.+|.... ++.+..++|.+|.+
T Consensus 169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~ 199 (292)
T COG0790 169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEK 199 (292)
T ss_pred HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence 3458999999999886 77788889966643
No 228
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.78 E-value=0.44 Score=48.96 Aligned_cols=92 Identities=21% Similarity=0.257 Sum_probs=73.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhc---
Q 009385 413 YADYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAES---FSKYASFLWRVR--- 483 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~---eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeA---L~nLG~~L~e~~--- 483 (536)
.|++++|+..|++.....|..+ .+...++.+++ ..+++++|+.+.++-+++.|+++++ ++..|...+..-
T Consensus 47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence 4899999999999999999876 56777888888 6899999999999999999999764 444454433211
Q ss_pred -CC---HHHHHHHHHHHHHhCCCCHH
Q 009385 484 -ND---LWAAEETFLEAISADPTNSY 505 (536)
Q Consensus 484 -GD---~eEAee~feKALeLDPdNpe 505 (536)
+| ..+|..-|+..|+--|+...
T Consensus 126 ~rDq~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence 12 46788888999999999764
No 229
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.76 E-value=0.069 Score=57.52 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDP-LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~-eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
.||..|+.+++-++.++-..- .+-..+|..++ ..|||++|...|+-+..-+--+++...+||.+.+.. |.|.+|+..
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~f-hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL-g~Y~eA~~~ 113 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF-HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYL-GQYIEAKSI 113 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHH-hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHH-HHHHHHHHH
Confidence 477778888777776654433 23333565566 589999999999999998888889999999887765 589999887
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCccccCCCCC
Q 009385 493 FLEAISADPTNSYYAANYANFLWNTGGEDTCFPLSSP 529 (536)
Q Consensus 493 feKALeLDPdNpeal~NyA~~L~elGr~E~clpl~~~ 529 (536)
-.+| |++|-...-+=++-.++|+.++....+++
T Consensus 114 ~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~ 146 (557)
T KOG3785|consen 114 AEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSS 146 (557)
T ss_pred HhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 7665 77776544344444466776666555443
No 230
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.73 E-value=0.13 Score=40.86 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009385 435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYA 476 (536)
Q Consensus 435 eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG 476 (536)
+.++.+|..++ ..|+|++|.++.+++|+++|+|..+.....
T Consensus 2 d~lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 34566666666 578888888888888888888877765544
No 231
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.72 E-value=0.72 Score=46.05 Aligned_cols=138 Identities=17% Similarity=0.164 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHhccccccccccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 009385 369 EEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA 448 (536)
Q Consensus 369 e~EvaLwnsmvaEA~~mQ~~d~~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~ 448 (536)
-..+.-|+.+++.|+++|- ......+-.|+-+.+ .-.+.++...+..+. -++|.+++ .++-..
T Consensus 58 l~~le~Y~kCielAa~Iq~--i~~~e~k~~R~~a~~----------~s~~~l~~L~~~tk~-S~dP~llY----y~Wsr~ 120 (203)
T PF11207_consen 58 LEALEKYSKCIELAAQIQH--IKQKERKTDRFRALL----------HSYQELERLQEETKN-SQDPYLLY----YHWSRF 120 (203)
T ss_pred HHHHHHHHHHHHHHhcCee--echHhHHHHHHHHHH----------HHHHHHHHHHHHHcc-CCCccHHH----HHhhcc
Confidence 4566778899999998774 233333333443333 233344444555553 33555442 234223
Q ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCCccc
Q 009385 449 HDYDRAEEYFKRAIAVE-PPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPT----NSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 449 GD~deAEe~FeKALeLD-PddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPd----Npeal~NyA~~L~elGr~E~c 523 (536)
|| +.|.+.|.++-.-. =++++..+.||.++.. .|.++|+.++.+++++.+. ||+++..++.++..+|+.+.+
T Consensus 121 ~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k--rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GD-QEALRRFLQLEGTPELETAELQYALATYYTK--RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred Cc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 54 47887777664332 4678999999987753 5899999999999998644 589999999999999999887
Q ss_pred cCC
Q 009385 524 FPL 526 (536)
Q Consensus 524 lpl 526 (536)
+..
T Consensus 198 Yiw 200 (203)
T PF11207_consen 198 YIW 200 (203)
T ss_pred hhh
Confidence 753
No 232
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.68 E-value=0.41 Score=46.08 Aligned_cols=118 Identities=15% Similarity=0.060 Sum_probs=85.4
Q ss_pred HHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 009385 394 HETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFS 473 (536)
Q Consensus 394 ~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~ 473 (536)
.+.+..++..+.+-+.. ++.++++..+...-.+.|+.+++-.--|.++. ..|++.+|+..|+.+.+-.|..+.+-.
T Consensus 7 ~~iv~gLie~~~~al~~---~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~~~p~~kA 82 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRL---GDPDDAEALLDALRVLRPEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAPGFPYAKA 82 (160)
T ss_pred HHHHHHHHHHHHHHHcc---CChHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCChHHHH
Confidence 34444455544333333 68999999999999999999999998887776 689999999999999999999998888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385 474 KYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518 (536)
Q Consensus 474 nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elG 518 (536)
.++.+|+..+ |.+ =..+-+++++.++ ++....-...++...+
T Consensus 83 LlA~CL~~~~-D~~-Wr~~A~evle~~~-d~~a~~Lv~~Ll~~~~ 124 (160)
T PF09613_consen 83 LLALCLYALG-DPS-WRRYADEVLESGA-DPDARALVRALLARAD 124 (160)
T ss_pred HHHHHHHHcC-ChH-HHHHHHHHHhcCC-ChHHHHHHHHHHHhcc
Confidence 8898887654 332 2334555666544 5666555555554444
No 233
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.66 E-value=0.44 Score=47.91 Aligned_cols=106 Identities=15% Similarity=0.141 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----------------------
Q 009385 414 ADYFRTELLYQTGLAQEP----NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP---------------------- 467 (536)
Q Consensus 414 gdyeeAee~YqKALeLdP----dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd---------------------- 467 (536)
|.+..|..++.++...++ ..+.+.+.++.+++ ..|+..+|...++..+.....
T Consensus 160 g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T PF02259_consen 160 GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-AQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVI 238 (352)
T ss_pred CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccc
Confidence 788889999988888652 25677888899999 689999999999988881111
Q ss_pred ------------CHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385 468 ------------DAESFSKYASFLWRV-----RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE 520 (536)
Q Consensus 468 ------------daeAL~nLG~~L~e~-----~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~ 520 (536)
-+.++..+|...... .++.+++..+|++|++++|++..+++.+|.++...-+.
T Consensus 239 ~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~ 308 (352)
T PF02259_consen 239 SSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLES 308 (352)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHh
Confidence 124566666655544 25889999999999999999999999999988765443
No 234
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.45 E-value=0.18 Score=43.59 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Q 009385 454 AEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTN--SYYAANYANFLWNTGG 519 (536)
Q Consensus 454 AEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN--peal~NyA~~L~elGr 519 (536)
....++++++.+|+|.++.+.+|..+.. .|++++|++.+.++++.+|++ ..+.-.+-.++-.+|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4567899999999999999999998775 579999999999999999876 4455555555555554
No 235
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=0.18 Score=52.73 Aligned_cols=89 Identities=18% Similarity=0.244 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHH----HhC--CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH
Q 009385 414 ADYFRTELLYQTGL----AQE--PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLW 487 (536)
Q Consensus 414 gdyeeAee~YqKAL----eLd--Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~e 487 (536)
||.+.|..+|++.= +++ -++...+.|.+.++. ..++|..|...|.+.++.||.++.+.++-|.++... |+..
T Consensus 226 GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l-g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl-g~l~ 303 (366)
T KOG2796|consen 226 GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL-GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL-GKLK 303 (366)
T ss_pred ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee-cccchHHHHHHHhhccccCCCchhhhchHHHHHHHH-HHHH
Confidence 77777777777332 222 334456666665444 578888888888888888888888888888877765 5888
Q ss_pred HHHHHHHHHHHhCCCCH
Q 009385 488 AAEETFLEAISADPTNS 504 (536)
Q Consensus 488 EAee~feKALeLDPdNp 504 (536)
.|++.++.++..+|...
T Consensus 304 DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 304 DALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHhccCCccc
Confidence 88888888888888754
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=0.15 Score=54.79 Aligned_cols=113 Identities=14% Similarity=0.027 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHHh-CCCCHHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385 414 ADYFRTELLYQTGLAQ-EPNDPLL---LANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA 489 (536)
Q Consensus 414 gdyeeAee~YqKALeL-dPdn~eA---L~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA 489 (536)
|+...-...++|.+-. +|+-|-. +=.|+.-+. ..|-|++|++..++|++++|.|..+....+.++- .+++++++
T Consensus 151 G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~-E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle-m~~r~Keg 228 (491)
T KOG2610|consen 151 GNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE-ECGIYDDAEKQADRALQINRFDCWASHAKAHVLE-MNGRHKEG 228 (491)
T ss_pred cchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH-HhccchhHHHHHHhhccCCCcchHHHHHHHHHHH-hcchhhhH
Confidence 6777777888888888 7776432 223553344 5899999999999999999999999999999885 46799999
Q ss_pred HHHHHHHHHhCCC-CHHH---HHHHHHHHHHcCCCccccCCCC
Q 009385 490 EETFLEAISADPT-NSYY---AANYANFLWNTGGEDTCFPLSS 528 (536)
Q Consensus 490 ee~feKALeLDPd-Npea---l~NyA~~L~elGr~E~clpl~~ 528 (536)
.++..+-=..=-. .-.+ +...|.++.+.+++|.++-+.+
T Consensus 229 ~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 229 KEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9988764221111 1111 3446777888888887765543
No 237
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.35 E-value=0.4 Score=58.66 Aligned_cols=109 Identities=16% Similarity=0.201 Sum_probs=87.7
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
.||.-+.-.+.|++|-+..- -...|..|..+|. .-+.+++|.++|++-++.--+-..+|..||.+|..+ ++-++|..
T Consensus 1509 ~yG~eesl~kVFeRAcqycd-~~~V~~~L~~iy~-k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~-ne~~aa~~ 1585 (1710)
T KOG1070|consen 1509 AYGTEESLKKVFERACQYCD-AYTVHLKLLGIYE-KSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ-NEAEAARE 1585 (1710)
T ss_pred hhCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHH-HhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc-cHHHHHHH
Confidence 34555556667777776432 3455656666766 578899999999999998888899999999999875 47899999
Q ss_pred HHHHHHHhCCC--CHHHHHHHHHHHHHcCCCccc
Q 009385 492 TFLEAISADPT--NSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 492 ~feKALeLDPd--Npeal~NyA~~L~elGr~E~c 523 (536)
.+.+|++--|. +.+.....|.+.+..|+.|..
T Consensus 1586 lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1586 LLKRALKSLPKQEHVEFISKFAQLEFKYGDAERG 1619 (1710)
T ss_pred HHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhh
Confidence 99999999998 777888999999999998874
No 238
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.34 E-value=0.33 Score=54.04 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhcCCHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSK--YASFLWRVRNDLWAAEE 491 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~n--LG~~L~e~~GD~eEAee 491 (536)
+++++-..+|++-|+-.|.|-.+|..||.+-. ..||.|+|...|+-|+....-+..-+.. |-.|-.. .|.+++|..
T Consensus 451 ~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~-~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~-~~E~ekaR~ 528 (677)
T KOG1915|consen 451 REFDRCRKLYEKFLEFSPENCYAWSKYAELET-SLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE-EGEFEKARA 528 (677)
T ss_pred hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh-cchHHHHHH
Confidence 68888888888888888888888888887655 5788888888888888766555433333 3333333 257888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Q 009385 492 TFLEAISADPTNSYYAANYANFLW 515 (536)
Q Consensus 492 ~feKALeLDPdNpeal~NyA~~L~ 515 (536)
+|++.|+..+... .+..+|.+-.
T Consensus 529 LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 529 LYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred HHHHHHHhcccch-HHHhHHHHhc
Confidence 8888888877665 6667776655
No 239
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.29 E-value=0.27 Score=50.48 Aligned_cols=71 Identities=17% Similarity=0.090 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 009385 434 PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA---ESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYY 506 (536)
Q Consensus 434 ~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda---eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpea 506 (536)
+.-|++-|+... ..|++++|.++|+++...+|..+ .++..++..++. .+++++|+.++++-+++.|.++.+
T Consensus 34 ~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 34 ASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCCh
Confidence 456666676655 58999999999999999998886 577888888887 469999999999999999999865
No 240
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.20 E-value=0.099 Score=35.12 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 009385 470 ESFSKYASFLWRVRNDLWAAEETFLEAISADPTN 503 (536)
Q Consensus 470 eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN 503 (536)
++++++|.++.. .|++++|+.+|++.++..|++
T Consensus 1 ~a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYK-LGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcCC
Confidence 578999998887 479999999999999999975
No 241
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.10 E-value=0.64 Score=48.39 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CCHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR--NDLWAAEE 491 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~--GD~eEAee 491 (536)
.-.+..+..|++||+.+|++..++..|=.... ...+-++..+-+++++..+|++...|..|=.+....- -.+.+...
T Consensus 45 a~~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 45 ALAERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 35667788999999999999999988776665 5678999999999999999999999988865443211 24677777
Q ss_pred HHHHHHHhCCC------------------CHHHHHHHHHHHHHcCCCcc
Q 009385 492 TFLEAISADPT------------------NSYYAANYANFLWNTGGEDT 522 (536)
Q Consensus 492 ~feKALeLDPd------------------Npeal~NyA~~L~elGr~E~ 522 (536)
.|.++++.-.. -..+...++.++.+.|-.|.
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~ 172 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTER 172 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHH
Confidence 77777764111 11346789999999997653
No 242
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.54 Score=53.19 Aligned_cols=100 Identities=17% Similarity=0.096 Sum_probs=81.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHhcCCH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKY------ASFLWRVRNDL 486 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nL------G~~L~e~~GD~ 486 (536)
.++...+......++..||++..+..|||..+....+.+..+....+.++...|+|...+..+ +.++... ++.
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 158 (620)
T COG3914 80 LADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLL-GRT 158 (620)
T ss_pred cccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHh-ccH
Confidence 367888999999999999999999999998877544455566666667999999999988877 7655543 689
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385 487 WAAEETFLEAISADPTNSYYAANYANF 513 (536)
Q Consensus 487 eEAee~feKALeLDPdNpeal~NyA~~ 513 (536)
.++..+.++++.+.|.++.....+...
T Consensus 159 ~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 159 AEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 999999999999999998765554443
No 243
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.90 E-value=1.4 Score=42.52 Aligned_cols=73 Identities=22% Similarity=0.066 Sum_probs=66.4
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385 447 VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE 520 (536)
Q Consensus 447 ~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~ 520 (536)
..++.++++..+...--+.|+.++....-|.++.. +|++.+|+.+|+.+.+-.|..+.+..-++.+|..+|+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 46899999999999999999999999999987776 57999999999999999999999999999999999874
No 244
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.87 E-value=0.069 Score=54.61 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=42.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE 470 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddae 470 (536)
.+|.+.|.++|.+|+++.|+...-|+.+|.. .++.|+++.|.+.|++.|++||+|..
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~-~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEY-TEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchh-hhhcccHHHHHHHHHHHHcCCccccc
Confidence 3677777778888888888877777777743 34677788888888888888777643
No 245
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.85 E-value=1.5 Score=43.68 Aligned_cols=100 Identities=17% Similarity=0.112 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHhCCC--C----HHHHH
Q 009385 414 ADYFRTELLYQTGLAQ----EPND---PLLLANYAQFLYIVAHD-------YDRAEEYFKRAIAVEPP--D----AESFS 473 (536)
Q Consensus 414 gdyeeAee~YqKALeL----dPdn---~eAL~NLA~lL~e~~GD-------~deAEe~FeKALeLDPd--d----aeAL~ 473 (536)
-.+++|++.|.-||-. ..++ +.++..+|.++. ..++ +.+|.+.|++|++.... . ...++
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR-~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYR-DLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 4788888888877764 2222 345666775554 5677 44567777777765533 2 45677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHH
Q 009385 474 KYASFLWRVRNDLWAAEETFLEAISADPTNS--YYAANYANFLWN 516 (536)
Q Consensus 474 nLG~~L~e~~GD~eEAee~feKALeLDPdNp--eal~NyA~~L~e 516 (536)
.+|.+..+. |++++|+.+|.+.+.. |+.. ..+.+.|.=+|+
T Consensus 170 LigeL~rrl-g~~~eA~~~fs~vi~~-~~~s~~~~l~~~AR~~w~ 212 (214)
T PF09986_consen 170 LIGELNRRL-GNYDEAKRWFSRVIGS-KKASKEPKLKDMARDQWQ 212 (214)
T ss_pred HHHHHHHHh-CCHHHHHHHHHHHHcC-CCCCCcHHHHHHHHHHHH
Confidence 788876664 7999999999999985 4333 367777776665
No 246
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.83 E-value=0.69 Score=46.47 Aligned_cols=104 Identities=19% Similarity=0.136 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIA-VEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALe-LDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
|.+++..-..+.++..|.... .+.||..+. ..|++.+|+..|++++. +-.+|+..+..++..+... +++.+|...+
T Consensus 71 dP~R~~Rea~~~~~~ApTvqn-r~rLa~al~-elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~-~~~A~a~~tL 147 (251)
T COG4700 71 DPERHLREATEELAIAPTVQN-RYRLANALA-ELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI-QEFAAAQQTL 147 (251)
T ss_pred ChhHHHHHHHHHHhhchhHHH-HHHHHHHHH-HhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh-ccHHHHHHHH
Confidence 344455555667777776443 334677777 58999999999999986 5578889999999988886 5999999999
Q ss_pred HHHHHhCCC--CHHHHHHHHHHHHHcCCCc
Q 009385 494 LEAISADPT--NSYYAANYANFLWNTGGED 521 (536)
Q Consensus 494 eKALeLDPd--Npeal~NyA~~L~elGr~E 521 (536)
++..+.+|. .|....-||..|.-.|+++
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a 177 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYA 177 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHHhcCCch
Confidence 999999885 4666788999999999865
No 247
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.81 E-value=0.59 Score=48.75 Aligned_cols=104 Identities=16% Similarity=0.092 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI---VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE 490 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e---~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe 490 (536)
.+++-|++..++...++-+ ..+..||..+.. ..+.+.+|.-+|+..=+.-|..+..++..+.+...+ ++++||+
T Consensus 151 ~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~-~~~eeAe 227 (299)
T KOG3081|consen 151 HRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL-GRYEEAE 227 (299)
T ss_pred HHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHh-cCHHHHH
Confidence 5777788888888877654 344445554321 234688999999999988888999999999887765 6999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385 491 ETFLEAISADPTNSYYAANYANFLWNTGGE 520 (536)
Q Consensus 491 e~feKALeLDPdNpeal~NyA~~L~elGr~ 520 (536)
...+.|+.-++++|+.+.|+-..-...|..
T Consensus 228 ~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 228 SLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999988888865
No 248
>PRK10941 hypothetical protein; Provisional
Probab=93.67 E-value=0.42 Score=49.24 Aligned_cols=57 Identities=14% Similarity=0.015 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAES 471 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeA 471 (536)
+++++|..+.++.+.++|+++.-+...|.+++ ..|.+..|...|+.-|+..|+++.+
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchhH
Confidence 45555555555555555555555555554444 3555555555555555555555554
No 249
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.62 E-value=0.22 Score=48.77 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385 419 TELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWR 481 (536)
Q Consensus 419 Aee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e 481 (536)
|+.+|.+|+.+.|++...|+.+|.+.. ..|+.=.|.=+|-|++-..-.++.|..||..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhc-cccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 788999999999999999999997766 68999999999999998887778999999887655
No 250
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.61 E-value=0.11 Score=37.00 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 009385 471 SFSKYASFLWRVRNDLWAAEETFLEAISAD 500 (536)
Q Consensus 471 AL~nLG~~L~e~~GD~eEAee~feKALeLD 500 (536)
++.+||.++.. .|++++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~-~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQ-QGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHH-CT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-cCCHHHHHHHHHHHHHhc
Confidence 57899998876 579999999999966543
No 251
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.49 E-value=0.47 Score=52.99 Aligned_cols=92 Identities=20% Similarity=0.094 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---CCHHHH
Q 009385 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA--HDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR---NDLWAA 489 (536)
Q Consensus 415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~--GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~---GD~eEA 489 (536)
|+..|..+|.+|-++.. +.+.+.+|.++..-. +|+.+|.++|.+|. .-.+..+.+++|.++..-. .+.+.|
T Consensus 308 d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa--~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAA--KAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHH--HcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 56666666666666544 334444555444212 34566777776664 3456666667766544311 256677
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Q 009385 490 EETFLEAISADPTNSYYAANYAN 512 (536)
Q Consensus 490 ee~feKALeLDPdNpeal~NyA~ 512 (536)
..+|++|.+.. ++.+...++.
T Consensus 384 ~~~~k~aA~~g--~~~A~~~~~~ 404 (552)
T KOG1550|consen 384 FAYYKKAAEKG--NPSAAYLLGA 404 (552)
T ss_pred HHHHHHHHHcc--ChhhHHHHHH
Confidence 77777777665 3444444443
No 252
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.33 E-value=0.25 Score=48.42 Aligned_cols=62 Identities=16% Similarity=0.280 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385 454 AEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWN 516 (536)
Q Consensus 454 AEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~e 516 (536)
|+.||.+|+.+.|++...|+.+|.+... .|+.-.|+-+|-|++...--.+.+..|+..++-.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7899999999999999999999987765 5799999999999998765558889999998877
No 253
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.26 E-value=0.35 Score=43.37 Aligned_cols=50 Identities=22% Similarity=0.147 Sum_probs=43.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIA 463 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALe 463 (536)
.|++++|+.++++++..+|.|-.++..+-.++. ..|+..+|.+.|++..+
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRR 124 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 389999999999999999999999999988888 69999999999998754
No 254
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.14 E-value=0.36 Score=38.28 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009385 470 ESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAAN 509 (536)
Q Consensus 470 eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~N 509 (536)
+-++.+|..++.. |+|++|..+.+++++++|+|.++..-
T Consensus 2 d~lY~lAig~ykl-~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKL-GEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHT-T-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hhHHHHHHHHHHh-hhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3467778778875 69999999999999999999987543
No 255
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.04 E-value=0.15 Score=52.21 Aligned_cols=75 Identities=20% Similarity=0.205 Sum_probs=60.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 442 QFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 442 ~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
..+. ..+|.+.|.+.|.+|+++.|++...|+.+|. +-+..|+++.|.+.|++.+++||.+-.. -++-|.-+|+.+
T Consensus 3 ~~~~-~~~D~~aaaely~qal~lap~w~~gwfR~g~-~~ekag~~daAa~a~~~~L~ldp~D~~g---aa~kLa~lg~~e 77 (287)
T COG4976 3 YMLA-ESGDAEAAAELYNQALELAPEWAAGWFRLGE-YTEKAGEFDAAAAAYEEVLELDPEDHGG---AALKLAVLGRGE 77 (287)
T ss_pred chhc-ccCChHHHHHHHHHHhhcCchhhhhhhhcch-hhhhcccHHHHHHHHHHHHcCCcccccc---hhhhHHhhcCCC
Confidence 3344 4799999999999999999999999999997 4455689999999999999999987543 334444556554
No 256
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.03 E-value=0.21 Score=53.98 Aligned_cols=104 Identities=15% Similarity=0.098 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------hCCCCH------------
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIA------------VEPPDA------------ 469 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALe------------LDPdda------------ 469 (536)
|+|++|...|.-+...+--+.+++.|+|-..+ ..|.|.+|+..-.+|-+ ..-+|-
T Consensus 71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD 149 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD 149 (557)
T ss_pred ccHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence 89999999999888887778889999987665 68888888877555421 011111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385 470 --ESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGG 519 (536)
Q Consensus 470 --eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr 519 (536)
+-...||.+.+... .|.+|++.|.+.+.-+|+.-..-.++|.+++.+.=
T Consensus 150 ~~EdqLSLAsvhYmR~-HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 150 TLEDQLSLASVHYMRM-HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY 200 (557)
T ss_pred hHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch
Confidence 11122334444433 68999999999999888877666778888877663
No 257
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.98 E-value=0.22 Score=34.83 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 009385 435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAV 464 (536)
Q Consensus 435 eAL~NLA~lL~e~~GD~deAEe~FeKALeL 464 (536)
.++.|+|.++. ..|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYR-AQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHH-HCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hhhhcchhhHHHHHHHHH
Confidence 34555665555 456666666666666553
No 258
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.87 E-value=0.85 Score=43.41 Aligned_cols=93 Identities=13% Similarity=0.047 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHhcCCHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI--VAHDYDRAEEYFKRAIA-VEPPD-AESFSKYASFLWRVRNDLWAA 489 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e--~~GD~deAEe~FeKALe-LDPdd-aeAL~nLG~~L~e~~GD~eEA 489 (536)
.++-...+.+++.-...--.....+|||..+-. ...|..+.+.+|+..++ -+|.. -+-++.|+.-+++.+ +|++|
T Consensus 12 ~d~~~~~e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlk-eY~~s 90 (149)
T KOG3364|consen 12 EDLIAGQEEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLK-EYSKS 90 (149)
T ss_pred hhhhHHHHHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHh-hHHHH
Confidence 444445554544444432246778888877652 23567889999999997 55554 356677777788764 89999
Q ss_pred HHHHHHHHHhCCCCHHHH
Q 009385 490 EETFLEAISADPTNSYYA 507 (536)
Q Consensus 490 ee~feKALeLDPdNpeal 507 (536)
+.|.+..++.+|+|.++.
T Consensus 91 ~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 91 LRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHhhCCCcHHHH
Confidence 999999999999999874
No 259
>PRK10941 hypothetical protein; Provisional
Probab=92.74 E-value=0.35 Score=49.77 Aligned_cols=69 Identities=12% Similarity=0.073 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 009385 436 LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYY 506 (536)
Q Consensus 436 AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpea 506 (536)
.+.|+=.++. ..+++++|..+.++.+.++|+++.-+...|.++.+. |.+..|..-++.-++..|++|.+
T Consensus 183 ml~nLK~~~~-~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL-~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 183 LLDTLKAALM-EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL-DCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHH-HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHhCCCchhH
Confidence 3445555555 689999999999999999999999999999888765 69999999999999999999976
No 260
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=92.68 E-value=0.047 Score=60.03 Aligned_cols=78 Identities=22% Similarity=0.177 Sum_probs=61.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385 440 YAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGG 519 (536)
Q Consensus 440 LA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr 519 (536)
-|.-.. ..++++.|+..|-|||+++|+++..+.+-+..+.. .+++..|+.-+.+|++++|....+++.-|.+...+++
T Consensus 10 ean~~l-~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 10 EANEAL-KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK-VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HHhhhc-ccchHHHHHHHHHHHHhcCCcceeeechhhhhhee-echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 344334 46899999999999999999999999888855554 4699999999999999999988766555555544443
No 261
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=0.25 Score=52.79 Aligned_cols=83 Identities=13% Similarity=0.110 Sum_probs=69.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009385 439 NYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE----SFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFL 514 (536)
Q Consensus 439 NLA~lL~e~~GD~deAEe~FeKALeLDPddae----AL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L 514 (536)
.=|+-++ ..++|..|+.+|-++|...-.|++ .|.|.|.+.+.. |+|..|+.-..+|+.++|.+..+++.=|.++
T Consensus 86 eeGN~~f-K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l-~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 86 EEGNEYF-KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL-GNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHhHHHH-HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 3577778 589999999999999998876654 466777766665 5899999999999999999999999999999
Q ss_pred HHcCCCccc
Q 009385 515 WNTGGEDTC 523 (536)
Q Consensus 515 ~elGr~E~c 523 (536)
+++.+...|
T Consensus 164 ~eLe~~~~a 172 (390)
T KOG0551|consen 164 LELERFAEA 172 (390)
T ss_pred HHHHHHHHH
Confidence 998885444
No 262
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.58 E-value=0.19 Score=55.96 Aligned_cols=102 Identities=14% Similarity=0.120 Sum_probs=79.0
Q ss_pred CCHHHHHHHHH-HHHHhCCC---C-----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---------hCC---------
Q 009385 414 ADYFRTELLYQ-TGLAQEPN---D-----PLLLANYAQFLYIVAHDYDRAEEYFKRAIA---------VEP--------- 466 (536)
Q Consensus 414 gdyeeAee~Yq-KALeLdPd---n-----~eAL~NLA~lL~e~~GD~deAEe~FeKALe---------LDP--------- 466 (536)
|+|.+|.+.+. --+...|. - --+|+|+|-+.| ..+.|..+..+|++||+ +.|
T Consensus 254 gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~-~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~n 332 (696)
T KOG2471|consen 254 GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY-QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQN 332 (696)
T ss_pred cchHHHHHHHHhcccccccCccccchhhhheeecCcceEee-ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcc
Confidence 77777777553 33444454 1 234678998888 58999999999999996 112
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009385 467 PDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNT 517 (536)
Q Consensus 467 ddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~el 517 (536)
..-++++|+|..+.+. |++.+|-++|.+|+..--.||..|..+|.+.+..
T Consensus 333 ks~eilYNcG~~~Lh~-grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLHS-GRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred cchhhHHhhhHHHHhc-CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 2347899999887765 6999999999999999999999999999887653
No 263
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.49 E-value=1 Score=50.31 Aligned_cols=88 Identities=16% Similarity=0.092 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI---VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE 490 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e---~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe 490 (536)
.|+.+|.++|..|... .+..+.+++|.++.. ...+...|..+|++|.+.+ ++.+...++.++....+++..+.
T Consensus 342 ~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~ 417 (552)
T KOG1550|consen 342 RDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTAL 417 (552)
T ss_pred ccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHH
Confidence 4567888888887763 567788888866552 1237888888888888777 66666667665554335677777
Q ss_pred HHHHHHHHhCCCCHH
Q 009385 491 ETFLEAISADPTNSY 505 (536)
Q Consensus 491 e~feKALeLDPdNpe 505 (536)
..+....++.-..++
T Consensus 418 ~~~~~~a~~g~~~~q 432 (552)
T KOG1550|consen 418 ALYLYLAELGYEVAQ 432 (552)
T ss_pred HHHHHHHHhhhhHHh
Confidence 666666666444433
No 264
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=0.64 Score=52.61 Aligned_cols=105 Identities=17% Similarity=0.066 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 415 DYFRTELLYQTGLAQEPNDPLLLANY--AQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 415 dyeeAee~YqKALeLdPdn~eAL~NL--A~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
.-..++.+|...+.++|.++.++..+ .. +....++.+.|.-.++.++..+|+++.++.+||..+...++....+..+
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSI-LLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHh-hccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 44447778888888999999986443 32 3335788889999999999999999999999999887655556666666
Q ss_pred HHHHHHhCCCCHHHHHHH------HHHHHHcCCC
Q 009385 493 FLEAISADPTNSYYAANY------ANFLWNTGGE 520 (536)
Q Consensus 493 feKALeLDPdNpeal~Ny------A~~L~elGr~ 520 (536)
-+-|..+.|+|.++.... +.++-.+|+.
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRT 158 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccH
Confidence 666999999999986666 6666555543
No 265
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.63 E-value=0.47 Score=50.46 Aligned_cols=112 Identities=15% Similarity=0.093 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
.+|.+|+++..--.+.+|.+...+..+|..|| ...++..|..||++.-.+.|........++.-+++. +.+..|....
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY-~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A-~i~ADALrV~ 101 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYY-RLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA-CIYADALRVA 101 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh-cccHHHHHHH
Confidence 78999999999999999999999999998888 589999999999999999999998888888888875 5788887766
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCccccCCC
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGEDTCFPLS 527 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E~clpl~ 527 (536)
......+.-..+.+.--+-+.+..|+.-.|..|-
T Consensus 102 ~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLv 135 (459)
T KOG4340|consen 102 FLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLV 135 (459)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcccccCcchHHHH
Confidence 5543221111122233445556667766665443
No 266
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.58 E-value=0.38 Score=33.64 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009385 469 AESFSKYASFLWRVRNDLWAAEETFLEAISA 499 (536)
Q Consensus 469 aeAL~nLG~~L~e~~GD~eEAee~feKALeL 499 (536)
+.+++++|.++... |++++|+.++++++++
T Consensus 2 a~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQ-GRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHC-T-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-hhcchhhHHHHHHHHH
Confidence 35789999988875 7999999999999986
No 267
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.53 E-value=1.7 Score=47.78 Aligned_cols=124 Identities=18% Similarity=0.017 Sum_probs=89.8
Q ss_pred ccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------H--HhCCHHHHHHHHHH
Q 009385 392 LDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLY---------I--VAHDYDRAEEYFKR 460 (536)
Q Consensus 392 lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~---------e--~~GD~deAEe~FeK 460 (536)
+-|-.+.++++-+. ..||.+.+++.+.++.+ .++-...+..+..+.| . ...+.+.|++.+++
T Consensus 186 lLPp~~~kll~~vG------F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~ 258 (468)
T PF10300_consen 186 LLPPKVLKLLSFVG------FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEE 258 (468)
T ss_pred hCCHHHHHHHhhcC------cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHH
Confidence 34556667888774 22899999999999988 4443333333222211 0 13468899999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCCccc
Q 009385 461 AIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSY----YAANYANFLWNTGGEDTC 523 (536)
Q Consensus 461 ALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpe----al~NyA~~L~elGr~E~c 523 (536)
.++..|+.+-.+..-|.++.. +|+.++|+++|++|+.....-++ .++.+++++.-+++.+++
T Consensus 259 ~~~~yP~s~lfl~~~gR~~~~-~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 259 MLKRYPNSALFLFFEGRLERL-KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred HHHhCCCcHHHHHHHHHHHHH-hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 999999999999999998765 57999999999999965444444 366788888877776543
No 268
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.43 E-value=0.91 Score=41.41 Aligned_cols=85 Identities=21% Similarity=0.206 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIVAH----------DYDRAEEYFKRAIAVEPPDAESFSKYASFLW 480 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~---eAL~NLA~lL~e~~G----------D~deAEe~FeKALeLDPddaeAL~nLG~~L~ 480 (536)
||+.+|++..+..+...+++. .++..-|.+++.... -+-.|+++|.+++.+.|+.+..++.+|.=+-
T Consensus 10 GnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~ 89 (111)
T PF04781_consen 10 GNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQLG 89 (111)
T ss_pred cCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHhh
Confidence 889999999999999988877 444445555442111 1345788888888888888888888876433
Q ss_pred HhcCCHHHHHHHHHHHHHh
Q 009385 481 RVRNDLWAAEETFLEAISA 499 (536)
Q Consensus 481 e~~GD~eEAee~feKALeL 499 (536)
-. ..|+++..-.+++|.+
T Consensus 90 s~-~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 90 SV-KYYKKAVKKAKRGLSV 107 (111)
T ss_pred hH-HHHHHHHHHHHHHhcc
Confidence 22 2577777777777764
No 269
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.79 E-value=1.8 Score=49.89 Aligned_cols=106 Identities=20% Similarity=0.302 Sum_probs=80.4
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH-HHHh-cCCHH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE--PPDAESFSKYASF-LWRV-RNDLW 487 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD--PddaeAL~nLG~~-L~e~-~GD~e 487 (536)
-+|-++.....|.+.|.+.---|....|||.+|. ...-+++|.+.|+|.+.+- |+--+.|+.|=.. ..+. +..++
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE-EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 3477888899999999999999999999999887 4778999999999999985 5556777766442 2222 24799
Q ss_pred HHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcC
Q 009385 488 AAEETFLEAISADPT-NSY-YAANYANFLWNTG 518 (536)
Q Consensus 488 EAee~feKALeLDPd-Npe-al~NyA~~L~elG 518 (536)
.|..+|++|++.-|. ++. ++..||.+--+-|
T Consensus 568 raRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~G 600 (835)
T KOG2047|consen 568 RARDLFEQALDGCPPEHAKTIYLLYAKLEEEHG 600 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999998882 111 2445665544444
No 270
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.75 E-value=3.1 Score=45.80 Aligned_cols=109 Identities=19% Similarity=0.083 Sum_probs=75.3
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCCCHH---HHHHHHHHHHHhcC
Q 009385 411 DDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV---EPPDAE---SFSKYASFLWRVRN 484 (536)
Q Consensus 411 Dd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL---DPddae---AL~nLG~~L~e~~G 484 (536)
...|+++.|..|.++|....|.-+-++...-...+ ..||++.|++..+..... .|+-++ +...-+.......-
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~-~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARC-AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHH-hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 35588888999999999999987766643322334 478999998888755543 344332 11112222223335
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385 485 DLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE 520 (536)
Q Consensus 485 D~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~ 520 (536)
|...|.+.-.+++++.|+......--+..|++.|+.
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~ 279 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNL 279 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccch
Confidence 788899999999999999988888888888888864
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.74 E-value=2.2 Score=47.89 Aligned_cols=93 Identities=17% Similarity=0.158 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCC-----
Q 009385 414 ADYFRTELLYQTGLAQEPN--DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV-EPPDAESFSKYASFLWRVRND----- 485 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPd--n~eAL~NLA~lL~e~~GD~deAEe~FeKALeL-DPddaeAL~nLG~~L~e~~GD----- 485 (536)
|+.++|++.|+..++.+|. +-.++.|+-..|. ..+.|+++...+.|==++ -|..+...+.-+.+..+.-+|
T Consensus 273 Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL-elq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e 351 (539)
T PF04184_consen 273 GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL-ELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPE 351 (539)
T ss_pred CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH-hcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCch
Confidence 7888888888888887775 4456777777666 478888888887773222 144555555554433332222
Q ss_pred ----------HHHHHHHHHHHHHhCCCCHHHH
Q 009385 486 ----------LWAAEETFLEAISADPTNSYYA 507 (536)
Q Consensus 486 ----------~eEAee~feKALeLDPdNpeal 507 (536)
-..|.+.+.||++.+|..|.++
T Consensus 352 ~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 352 AASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred hhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 1245677888888888877653
No 272
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.40 E-value=2.3 Score=44.00 Aligned_cols=95 Identities=11% Similarity=0.052 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HH-----HHHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLL------LANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA-ES-----FSKYASFLWR 481 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eA------L~NLA~lL~e~~GD~deAEe~FeKALeLDPdda-eA-----L~nLG~~L~e 481 (536)
.+..+|..++++||++.-+-... +..+|.+|.....|+++|+.+|++|-+.--.+- .+ +...+.+-..
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~ 166 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ 166 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence 57889999999999986553332 335777666555899999999999998765542 22 2333333333
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009385 482 VRNDLWAAEETFLEAISADPTNSYYAAN 509 (536)
Q Consensus 482 ~~GD~eEAee~feKALeLDPdNpeal~N 509 (536)
.++|.+|+..|++..+..-+|+...+.
T Consensus 167 -leqY~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 167 -LEQYSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred -HHHHHHHHHHHHHHHHHhccchHHHhH
Confidence 358999999999999988888765433
No 273
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.24 E-value=2.9 Score=40.24 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~ 482 (536)
.+.++++..+...-.+.|+.+++-.--|.++. ..|++++|...|+...+-.|..+.+-..++.+|+-.
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i-~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLI-ARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCccccchhHHHHHH-HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 57777777777777777777777766665555 577777777777777777777776666777666653
No 274
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.13 E-value=2.3 Score=44.59 Aligned_cols=107 Identities=13% Similarity=0.057 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH-HHHHHH
Q 009385 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLW-AAEETF 493 (536)
Q Consensus 415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~e-EAee~f 493 (536)
.-.+|.++-..+|.++|.|..+|.-.-.++.....|+.+-.+++.+.++-+|.|-.+|..--.++- ..|++. .=++..
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive-~l~d~s~rELef~ 136 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVE-LLGDPSFRELEFT 136 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHH-HhcCcccchHHHH
Confidence 556788888889999999988887766676666678888889999999999999888887765554 445777 677888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGEDT 522 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E~ 522 (536)
++++..|..|..++...-+++...++.+.
T Consensus 137 ~~~l~~DaKNYHaWshRqW~~r~F~~~~~ 165 (318)
T KOG0530|consen 137 KLMLDDDAKNYHAWSHRQWVLRFFKDYED 165 (318)
T ss_pred HHHHhccccchhhhHHHHHHHHHHhhHHH
Confidence 88899888888888887888777776543
No 275
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.06 E-value=1.8 Score=43.31 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=66.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDP----LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA-ESFSKYASFLWRVRNDL 486 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~----eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda-eAL~nLG~~L~e~~GD~ 486 (536)
+.+++++|+..++.++.. |.|. .+-..+|.++. ..|.+|+|.+.+..... +... ......|.+|.. .||-
T Consensus 101 e~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~-q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~-kg~k 175 (207)
T COG2976 101 EANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQL-QQKKADAALKTLDTIKE--ESWAAIVAELRGDILLA-KGDK 175 (207)
T ss_pred hhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHH-cCch
Confidence 458999999999999974 3332 33446888887 58999999988876542 2222 234456888876 5799
Q ss_pred HHHHHHHHHHHHhCCCCHH
Q 009385 487 WAAEETFLEAISADPTNSY 505 (536)
Q Consensus 487 eEAee~feKALeLDPdNpe 505 (536)
++|+..|++|++.+++++.
T Consensus 176 ~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 176 QEARAAYEKALESDASPAA 194 (207)
T ss_pred HHHHHHHHHHHHccCChHH
Confidence 9999999999999866553
No 276
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.97 E-value=0.73 Score=50.03 Aligned_cols=107 Identities=13% Similarity=0.044 Sum_probs=80.2
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDP-----LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE------SFSKYASFLW 480 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~-----eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddae------AL~nLG~~L~ 480 (536)
.+.+|.+++.+-..-+.+-..++ ..+..+|.+.. -.+-++++.++|++|+++.-++.+ ++..||.++.
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahl-gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHL-GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA 173 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhh-hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence 44688888888888887754444 34444665544 467899999999999999876654 4567888777
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCC
Q 009385 481 RVRNDLWAAEETFLEAISADPTNS----------YYAANYANFLWNTGGE 520 (536)
Q Consensus 481 e~~GD~eEAee~feKALeLDPdNp----------eal~NyA~~L~elGr~ 520 (536)
..+ |+++|..+..+|.++-.... .+++.++..|..+|+.
T Consensus 174 ~l~-D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~L 222 (518)
T KOG1941|consen 174 QLK-DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRL 222 (518)
T ss_pred HHH-hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhccc
Confidence 764 99999999999999854322 3477889999888865
No 277
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=89.93 E-value=2.6 Score=49.84 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=74.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
.|..++|..+++..-...++|-..+--+-.+|. ..+.+++|..+|++++..+|+ -+.+..|=..+.+. +.|.+-.+.
T Consensus 56 ~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~-d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~-~~yk~qQka 132 (932)
T KOG2053|consen 56 LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR-DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVRE-KSYKKQQKA 132 (932)
T ss_pred hcCchhHHHHHhhhccCCCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHH-HHHHHHHHH
Confidence 489999998888888888888888887776655 799999999999999999999 65555554444433 244443333
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385 493 FLEAISADPTNSYYAANYANFLWNTG 518 (536)
Q Consensus 493 feKALeLDPdNpeal~NyA~~L~elG 518 (536)
--+.-+.-|+++.+.++...++...-
T Consensus 133 a~~LyK~~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 133 ALQLYKNFPKRAYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHHhCCcccchHHHHHHHHHHhc
Confidence 33333478999998887776665543
No 278
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.92 E-value=1.6 Score=45.41 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009385 435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAV--------EPPDA----------ESFSKYASFLWRVRNDLWAAEETFLEA 496 (536)
Q Consensus 435 eAL~NLA~lL~e~~GD~deAEe~FeKALeL--------DPdda----------eAL~nLG~~L~e~~GD~eEAee~feKA 496 (536)
.++..-|+-+| ..|+|++|...|+.||.. .|.++ ..+.||..++... ++|-++++.....
T Consensus 179 ~~l~q~GN~lf-k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~-~e~yevleh~sei 256 (329)
T KOG0545|consen 179 PVLHQEGNRLF-KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKK-EEYYEVLEHCSEI 256 (329)
T ss_pred HHHHHhhhhhh-hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhH-HHHHHHHHHHHHH
Confidence 45666777778 689999999999998753 46555 4567888877764 6999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHH
Q 009385 497 ISADPTNSYYAANYANFLWN 516 (536)
Q Consensus 497 LeLDPdNpeal~NyA~~L~e 516 (536)
+..+|+|..+++..|.+...
T Consensus 257 L~~~~~nvKA~frRakAhaa 276 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAA 276 (329)
T ss_pred HhcCCchHHHHHHHHHHHHh
Confidence 99999999998887776543
No 279
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.67 E-value=3.4 Score=46.97 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=96.5
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE-PPDAESFSKYASFLWRVRNDLWAAE 490 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD-PddaeAL~nLG~~L~e~~GD~eEAe 490 (536)
.+|++......|++++.-=....+.|.+|+..+. ..|+.+-|...+.++.++. |.-+..+...+.+- +..|++..|.
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~-~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~-e~~~n~~~A~ 386 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWME-SSGDVSLANNVLARACKIHVKKTPIIHLLEARFE-ESNGNFDDAK 386 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH-HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH-HhhccHHHHH
Confidence 3489999999999999998999999999999887 5799999999999999887 66667777777654 5567999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385 491 ETFLEAISADPTNSYYAANYANFLWNTGGEDTCF 524 (536)
Q Consensus 491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~cl 524 (536)
..+++...--|+..++-......+...|..++|.
T Consensus 387 ~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 387 VILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 9999999977999998888888899999888776
No 280
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.61 E-value=1.1 Score=40.89 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=58.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHhCCCCHHHH
Q 009385 441 AQFLYIVAHDYDRAEEYFKRAIAVEPPDA---ESFSKYASFLWRVRN----------DLWAAEETFLEAISADPTNSYYA 507 (536)
Q Consensus 441 A~lL~e~~GD~deAEe~FeKALeLDPdda---eAL~nLG~~L~e~~G----------D~eEAee~feKALeLDPdNpeal 507 (536)
|.-++ ..||+-+|.+..+..+..++++. ..+..-|.+++.+.. -+-.|.++|.++..+.|+.+..+
T Consensus 3 A~~~~-~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 3 AKDYF-ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred HHHHH-HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 44455 58999999999999999999988 455566776654432 25689999999999999998888
Q ss_pred HHHHHHHH
Q 009385 508 ANYANFLW 515 (536)
Q Consensus 508 ~NyA~~L~ 515 (536)
+.+|.-+.
T Consensus 82 ~~la~~l~ 89 (111)
T PF04781_consen 82 FELASQLG 89 (111)
T ss_pred HHHHHHhh
Confidence 88887543
No 281
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.57 E-value=1.7 Score=48.74 Aligned_cols=64 Identities=20% Similarity=0.397 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS 477 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~ 477 (536)
+.+.+--..|.++|...|+++++|..-|...++..-+.+.|...|.++|+.+|+.+..+..|=.
T Consensus 119 ~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 119 KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 3477777899999999999999999888877765555999999999999999999999877643
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.41 E-value=5 Score=40.36 Aligned_cols=68 Identities=22% Similarity=0.265 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC----------------CHHHHHHH
Q 009385 435 LLLANYAQFLYIVA------HDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRN----------------DLWAAEET 492 (536)
Q Consensus 435 eAL~NLA~lL~e~~------GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~G----------------D~eEAee~ 492 (536)
.++..+|.+.. .. ++.+++.++|++|++++|+...+++.+|.++...-. -...|+..
T Consensus 253 ~~~l~~a~w~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~ 331 (352)
T PF02259_consen 253 KAFLLLAKWLD-ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEG 331 (352)
T ss_pred HHHHHHHHHHH-hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHH
Confidence 45566676655 34 889999999999999999999999999986654311 12458899
Q ss_pred HHHHHHhCCCC
Q 009385 493 FLEAISADPTN 503 (536)
Q Consensus 493 feKALeLDPdN 503 (536)
|-+|+.+.++.
T Consensus 332 y~~al~~~~~~ 342 (352)
T PF02259_consen 332 YLKALSLGSKY 342 (352)
T ss_pred HHHHHhhCCCc
Confidence 99999998883
No 283
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.93 E-value=0.092 Score=56.01 Aligned_cols=72 Identities=25% Similarity=0.209 Sum_probs=59.6
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385 447 VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGG 519 (536)
Q Consensus 447 ~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr 519 (536)
..|+++.|++.|-+||.++|..+..|...+.++..++ +..+|+.-+..|++++|+.+.-+-.-+.+..-+|+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~-kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLK-KPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeecc-CCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 3688999999999999999999999999999888764 89999999999999999988654333333334443
No 284
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.67 E-value=0.83 Score=51.15 Aligned_cols=102 Identities=13% Similarity=0.095 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHhcCCHHH
Q 009385 418 RTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRA-IAVEPP--------DAESFSKYASFLWRVRNDLWA 488 (536)
Q Consensus 418 eAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKA-LeLDPd--------daeAL~nLG~~L~e~~GD~eE 488 (536)
.+..--+.++.+..+.+.+++-.+++.| .+|+|.+|.+.+... +...|. ..-.++|+|.+.+.. +.|..
T Consensus 224 ~~krevK~vmn~a~~s~~~l~LKsq~eY-~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~-~~y~~ 301 (696)
T KOG2471|consen 224 LAKREVKHVMNIAQDSSMALLLKSQLEY-AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL-GCYQA 301 (696)
T ss_pred HHHHhhhhhhhhcCCCcHHHHHHHHHHH-HhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh-hhHHH
Confidence 3334444566667788888888999999 699999999988754 333344 223568999998876 58999
Q ss_pred HHHHHHHHHH---------hCC---------CCHHHHHHHHHHHHHcCCCc
Q 009385 489 AEETFLEAIS---------ADP---------TNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 489 Aee~feKALe---------LDP---------dNpeal~NyA~~L~elGr~E 521 (536)
+..+|.+|++ +.| ..-+++||.|..|...|+.-
T Consensus 302 ~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl 352 (696)
T KOG2471|consen 302 SSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPL 352 (696)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcH
Confidence 9999999996 122 23467999999999999864
No 285
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.45 E-value=3.2 Score=35.49 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=41.0
Q ss_pred HhCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 009385 447 VAHDYDRAEEYFKRAIAVEPPD---------AESFSKYASFLWRVRNDLWAAEETFLEAISADP 501 (536)
Q Consensus 447 ~~GD~deAEe~FeKALeLDPdd---------aeAL~nLG~~L~e~~GD~eEAee~feKALeLDP 501 (536)
..+||.+|.+.+.+.+...... ..++.++|.+.... |++++|+..+++|+++.-
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~-G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRF-GHYEEALQALEEAIRLAR 72 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHH
Confidence 4799999977777777654222 45677888877664 799999999999999754
No 286
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=87.40 E-value=3 Score=49.40 Aligned_cols=84 Identities=21% Similarity=0.243 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----------
Q 009385 414 ADYFRTELLYQTG----------LAQEPN----------DPLLLANYAQFLYIVAHDYDRAEEYFKRAIA---------- 463 (536)
Q Consensus 414 gdyeeAee~YqKA----------LeLdPd----------n~eAL~NLA~lL~e~~GD~deAEe~FeKALe---------- 463 (536)
+|.+.|+++|+|+ |..+|. ++.+|...|+.+. ..|++|.|+.+|..|-.
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlE-S~GemdaAl~~Y~~A~D~fs~VrI~C~ 950 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLE-SVGEMDAALSFYSSAKDYFSMVRIKCI 950 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHh-cccchHHHHHHHHHhhhhhhheeeEee
Confidence 6888999999864 455554 4455555676555 68999999999987643
Q ss_pred -----------hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009385 464 -----------VEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISA 499 (536)
Q Consensus 464 -----------LDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeL 499 (536)
-...|-.|-+.+|.-| +..|++.+|+.+|.+|-..
T Consensus 951 qGk~~kAa~iA~esgd~AAcYhlaR~Y-En~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 951 QGKTDKAARIAEESGDKAACYHLARMY-ENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred ccCchHHHHHHHhcccHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHH
Confidence 3456677888888854 5567999999998886543
No 287
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.92 E-value=4.6 Score=45.44 Aligned_cols=97 Identities=11% Similarity=0.076 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCH----HHHHHHHHHHHHhc
Q 009385 414 ADYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIVAHDYDRAEEYFKRAIAVE---PPDA----ESFSKYASFLWRVR 483 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~---eAL~NLA~lL~e~~GD~deAEe~FeKALeLD---Pdda----eAL~nLG~~L~e~~ 483 (536)
-+..+++++.+..+...|.+. ..+..+|.+++...++.+.|...+++|..+- |+.- +++..|+.++....
T Consensus 23 PkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~ 102 (629)
T KOG2300|consen 23 PKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLA 102 (629)
T ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhc
Confidence 488899999999999988753 4567789988878999999999999998875 5553 45566676666555
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009385 484 NDLWAAEETFLEAISADPTNSYYAANY 510 (536)
Q Consensus 484 GD~eEAee~feKALeLDPdNpeal~Ny 510 (536)
+.+..|+..+++|+++.-++|....++
T Consensus 103 ~s~~~~KalLrkaielsq~~p~wsckl 129 (629)
T KOG2300|consen 103 QSFPPAKALLRKAIELSQSVPYWSCKL 129 (629)
T ss_pred CCCchHHHHHHHHHHHhcCCchhhHHH
Confidence 578899999999999999998664443
No 288
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=86.59 E-value=1.6 Score=28.63 Aligned_cols=28 Identities=36% Similarity=0.590 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385 450 DYDRAEEYFKRAIAVEPPDAESFSKYAS 477 (536)
Q Consensus 450 D~deAEe~FeKALeLDPddaeAL~nLG~ 477 (536)
+.++|...|++++...|.++..|..|..
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4455555555555555555555555443
No 289
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=86.52 E-value=3.1 Score=48.03 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=20.6
Q ss_pred hhcccchhhhhhhhhHHHHHHHHHhhhHH
Q 009385 172 EAGESAYCSVKKAFSSMVFIIRELHSFTL 200 (536)
Q Consensus 172 ~~~~~~~~s~~~afssmv~~i~~~~~~~l 200 (536)
+.-..++-+|++.|-+-+..++-|-+--+
T Consensus 78 ~~T~~~~~~vn~c~er~lv~mHkmpRIwl 106 (835)
T KOG2047|consen 78 CPTDPAYESVNNCFERCLVFMHKMPRIWL 106 (835)
T ss_pred CCCChHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 55577888888888777776666665544
No 290
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.30 E-value=9.1 Score=40.93 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=22.0
Q ss_pred hCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009385 448 AHDYDRAEEYFKRAIAVEPP-DAESFSKYASFLWRVRNDLWAAEETFLEA 496 (536)
Q Consensus 448 ~GD~deAEe~FeKALeLDPd-daeAL~nLG~~L~e~~GD~eEAee~feKA 496 (536)
+|-+..|.++.+-.+.+||. |+-+...+=+.+....++++-=++.++..
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 44455555555555555555 44443333333333334444444444433
No 291
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=86.26 E-value=1.9 Score=28.28 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385 485 DLWAAEETFLEAISADPTNSYYAANYANF 513 (536)
Q Consensus 485 D~eEAee~feKALeLDPdNpeal~NyA~~ 513 (536)
++++|...|++++...|.++.++..|+.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34555555555555555555555555443
No 292
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.93 E-value=11 Score=38.41 Aligned_cols=93 Identities=15% Similarity=0.094 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHh----C---CCCH-------H
Q 009385 414 ADYFRTELLYQTGLAQE-PNDP-------LLLANYAQFLYIVAH-DYDRAEEYFKRAIAV----E---PPDA-------E 470 (536)
Q Consensus 414 gdyeeAee~YqKALeLd-Pdn~-------eAL~NLA~lL~e~~G-D~deAEe~FeKALeL----D---Pdda-------e 470 (536)
|+++.|+.+|.|+=.+. ..++ ..++|.|.-++ ..+ +++.|...+++|+++ . ...+ .
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 67777777777776654 3332 34555555555 456 777888888877776 2 1222 2
Q ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHH
Q 009385 471 SFSKYASFLWRVR--NDLWAAEETFLEAISADPTNSYYA 507 (536)
Q Consensus 471 AL~nLG~~L~e~~--GD~eEAee~feKALeLDPdNpeal 507 (536)
++..++.++...+ ...++|..+.+.+-.--|+.+..+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 3445555554432 123455555555555556666654
No 293
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.84 E-value=4.5 Score=42.18 Aligned_cols=106 Identities=11% Similarity=0.041 Sum_probs=71.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHH------HHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLA------NYAQFLYIVAHDYDRAEEYFKRAIAVE-----PPDA-ESFSKYASFLW 480 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~------NLA~lL~e~~GD~deAEe~FeKALeLD-----Pdda-eAL~nLG~~L~ 480 (536)
.++|++|..++.+|++-.-+|...+. ..|.+ .+....+.+++.+|+||..+. |+-+ .++-.-|.++
T Consensus 44 Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaamL-ake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~l- 121 (308)
T KOG1585|consen 44 AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAML-AKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKAL- 121 (308)
T ss_pred hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-
Confidence 36999999999999977666654332 23333 335778999999999999875 3332 4455556555
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCCc
Q 009385 481 RVRNDLWAAEETFLEAISADPTNS------YYAANYANFLWNTGGED 521 (536)
Q Consensus 481 e~~GD~eEAee~feKALeLDPdNp------eal~NyA~~L~elGr~E 521 (536)
+ .-++++|+.+|++++++--.+- +.+...+.+|....+++
T Consensus 122 e-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 122 E-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred h-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 3 2489999999999998643322 23455666676666553
No 294
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.33 E-value=7.3 Score=42.82 Aligned_cols=102 Identities=11% Similarity=0.003 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC---HHHHH
Q 009385 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH-DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRND---LWAAE 490 (536)
Q Consensus 415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G-D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD---~eEAe 490 (536)
-.++-+.+...+|+.+|+...+|+....++...-. ++..-....+++|++||.|-.+|..--.+.-..... ..+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 55666778899999999999999999988773222 478899999999999999988876554443333222 56668
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385 491 ETFLEAISADPTNSYYAANYANFLWN 516 (536)
Q Consensus 491 e~feKALeLDPdNpeal~NyA~~L~e 516 (536)
++..++|.-++.|..++++...+|-.
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~ 195 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLST 195 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHH
Confidence 89999999999999999988887763
No 295
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=84.93 E-value=6.4 Score=46.82 Aligned_cols=62 Identities=26% Similarity=0.378 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 434 PLLLANYAQFLYIVAHDYDRAEEYFKRA----------IAVEPP----------DAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 434 ~eAL~NLA~lL~e~~GD~deAEe~FeKA----------LeLDPd----------daeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
...|++||.-|. ..+|.+.|++||+|+ |.-+|. |...|...|..+ +-.|+.+.|+.+|
T Consensus 858 r~Tyy~yA~~Le-ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYl-ES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 858 RNTYYNYAKYLE-ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYL-ESVGEMDAALSFY 935 (1416)
T ss_pred hhhHHHHHHHHH-hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHH-hcccchHHHHHHH
Confidence 357889998777 689999999999985 222333 334455566543 4557899999988
Q ss_pred HHHH
Q 009385 494 LEAI 497 (536)
Q Consensus 494 eKAL 497 (536)
..|-
T Consensus 936 ~~A~ 939 (1416)
T KOG3617|consen 936 SSAK 939 (1416)
T ss_pred HHhh
Confidence 8764
No 296
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=84.49 E-value=14 Score=42.30 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHH---HHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAE---EYFKRAIAVEPPD---AESFSKYASFLWRVRNDLW 487 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAE---e~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~e 487 (536)
|++..|..+|++.....|+..++-.....+.+ ..|+.+.+. +++...+.-.-++ ...+..++.+.+..+++.+
T Consensus 380 ~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~-r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~ 458 (577)
T KOG1258|consen 380 GNFDDAKVILQRIESEYPGLVEVVLRKINWER-RKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDAD 458 (577)
T ss_pred ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHH-HhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHH
Confidence 79999999999999999998888777777777 578888887 3333333322222 2345677778888888999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385 488 AAEETFLEAISADPTNSYYAANYANFLWNTG 518 (536)
Q Consensus 488 EAee~feKALeLDPdNpeal~NyA~~L~elG 518 (536)
.|...+.+|+...|++...+..+-.+....+
T Consensus 459 ~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 459 LARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 9999999999999999988888888777666
No 297
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.33 E-value=4.4 Score=46.83 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=54.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009385 441 AQFLYIVAHDYDRAEEYFKRAIAVEPPDA------ESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFL 514 (536)
Q Consensus 441 A~lL~e~~GD~deAEe~FeKALeLDPdda------eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L 514 (536)
|.-++ ..++|..+.+.|+..++.-|.|- ....+++.+|.... +++.|.+++++|=+.||.++-.....-...
T Consensus 361 A~~~F-~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~-QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 361 AKKLF-KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLE-QLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 43445 46788888888888888777663 45566776666654 788888888888888888876655444444
Q ss_pred HHcCCCcccc
Q 009385 515 WNTGGEDTCF 524 (536)
Q Consensus 515 ~elGr~E~cl 524 (536)
...|.-+.++
T Consensus 439 ~~E~~Se~AL 448 (872)
T KOG4814|consen 439 LAEDKSEEAL 448 (872)
T ss_pred HHhcchHHHH
Confidence 4444444333
No 298
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.15 E-value=1.9 Score=49.23 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=81.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009385 420 ELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE--SFSKYASFLWRVRNDLWAAEETFLEAI 497 (536)
Q Consensus 420 ee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddae--AL~nLG~~L~e~~GD~eEAee~feKAL 497 (536)
-.....+++.+|.+..++. ++.+|+..+|+.-+|.+|+..|+-..|++.. ++..+|.+|.+. |...+|--.+..|+
T Consensus 199 ~~~~~~glq~~~~sw~lH~-~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~Ra-G~sadA~iILhAA~ 276 (886)
T KOG4507|consen 199 GHLIHEGLQKNTSSWVLHN-MASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRA-GFSADAAVILHAAL 276 (886)
T ss_pred HHHHHHhhhcCchhHHHHH-HHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHc-ccccchhheeehhc
Confidence 3455678888888776664 5668888899999999999999999888764 677889888775 68888888888998
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 498 SADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 498 eLDPdNpeal~NyA~~L~elGr~E 521 (536)
.-.|.-+.-++.++.++..+|++.
T Consensus 277 ~dA~~~t~n~y~l~~i~aml~~~N 300 (886)
T KOG4507|consen 277 DDADFFTSNYYTLGNIYAMLGEYN 300 (886)
T ss_pred cCCccccccceeHHHHHHHHhhhh
Confidence 888877777888889888888654
No 299
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=82.78 E-value=17 Score=34.34 Aligned_cols=84 Identities=15% Similarity=0.048 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------hCCCCHHH---
Q 009385 414 ADYFRTELLYQTGLAQEPN------------DPLLLANYAQFLYIVAHDYDRAEEYFKRAIA-------VEPPDAES--- 471 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPd------------n~eAL~NLA~lL~e~~GD~deAEe~FeKALe-------LDPddaeA--- 471 (536)
+.|++|..-|++|++..-. |...+..|+..+. ..|+|++++...++||. ++-+....
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~-~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALA-GLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 7899999999999987422 3456777777777 58999887777777765 55555443
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009385 472 -FSKYASFLWRVRNDLWAAEETFLEAISA 499 (536)
Q Consensus 472 -L~nLG~~L~e~~GD~eEAee~feKALeL 499 (536)
.++-|..+-. .|+.++|...|++|.++
T Consensus 102 aVfsra~Al~~-~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 102 AVFSRAVALEG-LGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCChHHHHHHHHHHHHH
Confidence 3455555554 47999999999999875
No 300
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=82.40 E-value=14 Score=42.18 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
.-...|...|.+|-+..-.-..++..-|.+-|...+|.+-|.+.|+-.|+..++.+..-..|..+|... |+-..|..+|
T Consensus 380 eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~l-Ndd~N~R~LF 458 (656)
T KOG1914|consen 380 EGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHL-NDDNNARALF 458 (656)
T ss_pred hhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHh-CcchhHHHHH
Confidence 355667778888877544433555555555444579999999999999999999999888888888876 4788899999
Q ss_pred HHHHHh--CCCCH-HHHHHHHHHHHHcCCC
Q 009385 494 LEAISA--DPTNS-YYAANYANFLWNTGGE 520 (536)
Q Consensus 494 eKALeL--DPdNp-eal~NyA~~L~elGr~ 520 (536)
++++.- +|+-. .++..+-.+-.+.|+.
T Consensus 459 Er~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 459 ERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 999886 44332 4555555555555543
No 301
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=82.35 E-value=3.9 Score=30.01 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHH--HHHHHHhCCC
Q 009385 437 LANYAQFLYIVAHDYDRAEEY--FKRAIAVEPP 467 (536)
Q Consensus 437 L~NLA~lL~e~~GD~deAEe~--FeKALeLDPd 467 (536)
+..+|..++ ..|++++|++. |+-+..++|.
T Consensus 4 ~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHH-HHhhHHHHHHHHHHHHHHHhccc
Confidence 334444444 24444444444 3244444443
No 302
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=81.66 E-value=4.8 Score=40.50 Aligned_cols=115 Identities=10% Similarity=0.081 Sum_probs=80.6
Q ss_pred cccccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHh
Q 009385 389 DESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI----VAHDYDRAEEYFKRAIAV 464 (536)
Q Consensus 389 d~~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e----~~GD~deAEe~FeKALeL 464 (536)
..-.+|+....+.-.+++-- ++|++|...|++--.. -.++..-+.||..+.. ..+++..|.++|+.|-
T Consensus 29 Y~EK~Pe~C~lLgdYlEgi~-----knF~~A~kv~K~nCde-n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC-- 100 (248)
T KOG4014|consen 29 YEEKRPESCQLLGDYLEGIQ-----KNFQAAVKVFKKNCDE-NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIAC-- 100 (248)
T ss_pred cccCCchHHHHHHHHHHHHH-----HHHHHHHHHHHhcccc-cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHh--
Confidence 34556777776666554322 5788888888776654 3467888888854331 1237899999999986
Q ss_pred CCCCHHHHHHHHHHHHHhc----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385 465 EPPDAESFSKYASFLWRVR----N--DLWAAEETFLEAISADPTNSYYAANYANF 513 (536)
Q Consensus 465 DPddaeAL~nLG~~L~e~~----G--D~eEAee~feKALeLDPdNpeal~NyA~~ 513 (536)
+-+.+.+-.++|.+++... + +.++|++|+.+|..++ +..+.++|...
T Consensus 101 ~~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m 153 (248)
T KOG4014|consen 101 DANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTM 153 (248)
T ss_pred ccCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHH
Confidence 5788999999998777521 1 4889999999998774 45566666543
No 303
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=81.63 E-value=2.3 Score=48.14 Aligned_cols=73 Identities=19% Similarity=0.072 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 449 HDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV--RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 449 GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~--~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
.....|+..|.+++..-|+....|.+++.+++.. +|+.-.|+.-...|+++||..-.+++.++.+|.+++++.
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ 462 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYL 462 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHH
Confidence 4566889999999999999999999999877653 367778888899999999999999999999999999763
No 304
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=81.33 E-value=1.2 Score=47.69 Aligned_cols=64 Identities=11% Similarity=0.201 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS 477 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~ 477 (536)
+-|.+--..|..++...|.|.++|.--+..-+...++.+.+...|.++|+++|+++..|..|-.
T Consensus 121 k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 121 KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 3455666788999999999999998755554446899999999999999999999999887643
No 305
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.20 E-value=6.1 Score=39.62 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCHHHHH
Q 009385 432 NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD----AESFSKYASFLWRVRNDLWAAE 490 (536)
Q Consensus 432 dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd----aeAL~nLG~~L~e~~GD~eEAe 490 (536)
++++..+.+|.+|. ..|.++|+..|.++|++.+.+ ++++..|+.+++.. |+++.|=
T Consensus 139 ~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~-~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL-KNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh-cchhhhh
Confidence 57899999996544 799999999999999987544 89999999988875 5888773
No 306
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.74 E-value=5.6 Score=37.95 Aligned_cols=54 Identities=24% Similarity=0.232 Sum_probs=45.6
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 009385 411 DDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEP 466 (536)
Q Consensus 411 Dd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDP 466 (536)
.|.+.....+++.++.++..| ++..+.+++.++. ..|+.++|....+++..+-|
T Consensus 122 ~~~~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 122 PDPEMLEAYIEWAERLLRRRP-DPNVYQRYALALA-LLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence 344667778888889999889 6888888888877 68999999999999999999
No 307
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=79.72 E-value=8.2 Score=33.01 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHhCCC----C-----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 009385 414 ADYFRTELLYQTGLAQEPN----D-----PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP 467 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPd----n-----~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd 467 (536)
+||..|.+.+.+.+..... . ..++.++|.+.. ..|++++|...+++||++.-.
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHH
Confidence 7899997777766665322 2 456778888777 689999999999999997643
No 308
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=79.66 E-value=12 Score=39.43 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
.+|.++..+|+..+..+- .-.+|...-+.+|+++|.|-.+|..--.++-+.+.++.+=.+++
T Consensus 40 e~fr~~m~YfRAI~~~~E------------------~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l 101 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNE------------------KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYL 101 (318)
T ss_pred hhHHHHHHHHHHHHhccc------------------cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence 467777776665554443 34566666777888999999999888888888878899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
.+.++-+|.|.++++..-.++-..|+..
T Consensus 102 ~eI~e~npKNYQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 102 DEIIEDNPKNYQVWHHRRVIVELLGDPS 129 (318)
T ss_pred HHHHHhCccchhHHHHHHHHHHHhcCcc
Confidence 9999999999999988888777777543
No 309
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=78.79 E-value=24 Score=39.18 Aligned_cols=100 Identities=17% Similarity=0.067 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
.|...|......++++.|+...+-.--+..|+ ..|+..++-+.++.+-+.+|+ +++...|- ..+ .| +.+++-+
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf-~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~--~ar-~g--dta~dRl 315 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALF-RDGNLRKGSKILETAWKAEPH-PDIALLYV--RAR-SG--DTALDRL 315 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHH-hccchhhhhhHHHHHHhcCCC-hHHHHHHH--Hhc-CC--CcHHHHH
Confidence 35677888888888888888777766677777 578888888888888887773 44433332 222 22 3333334
Q ss_pred HHHH---HhCCCCHHHHHHHHHHHHHcCCC
Q 009385 494 LEAI---SADPTNSYYAANYANFLWNTGGE 520 (536)
Q Consensus 494 eKAL---eLDPdNpeal~NyA~~L~elGr~ 520 (536)
++|- .+.|+|.+.....+..-...|++
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence 3333 35677777666666666665543
No 310
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=77.51 E-value=5.1 Score=38.29 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=52.0
Q ss_pred CccccCCHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009385 409 EADDYADYFRTELLYQTGLA-QEPND-PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSK 474 (536)
Q Consensus 409 epDd~gdyeeAee~YqKALe-LdPdn-~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~n 474 (536)
..++-.+..+-+.+++..++ -.|.. .+.++-+|.-+| ..++|++|..|.+..|+.+|+|..+.-.
T Consensus 44 ~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y-RlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 44 RSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY-RLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred cccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH-HHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 34455788899999999997 55543 456666777777 6899999999999999999999988643
No 311
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=76.68 E-value=10 Score=39.58 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=29.5
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 009385 448 AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSY 505 (536)
Q Consensus 448 ~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpe 505 (536)
.++++.|..+-++.+.++|+++.-+..-|.+|.+. |.+.-|+.-+...++.-|+++.
T Consensus 194 e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql-~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 194 ELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQL-GCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred hhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhc-CCchhhHHHHHHHHHhCCCchH
Confidence 44555555555555555555555555555444432 3455555555555555555544
No 312
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.53 E-value=29 Score=33.52 Aligned_cols=73 Identities=19% Similarity=0.062 Sum_probs=65.2
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385 447 VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE 520 (536)
Q Consensus 447 ~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~ 520 (536)
...+.++++..+...--+.|+.++...--|+++.. +|++.+|+..|+...+-.|..+....-++.+|.-+|+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 36899999999999999999999999988987765 57999999999999998888898888899999999974
No 313
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=76.50 E-value=7.2 Score=28.62 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHH--HHHHHHhCCCC
Q 009385 470 ESFSKYASFLWRVRNDLWAAEET--FLEAISADPTN 503 (536)
Q Consensus 470 eAL~nLG~~L~e~~GD~eEAee~--feKALeLDPdN 503 (536)
+.+..+|..++. +|++++|+.+ |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcccC
Confidence 567788887876 5699999999 55999999875
No 314
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=76.06 E-value=13 Score=37.77 Aligned_cols=74 Identities=15% Similarity=0.042 Sum_probs=53.5
Q ss_pred HhCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHh----C---CCCHH-----
Q 009385 447 VAHDYDRAEEYFKRAIAVE-PPDA-------ESFSKYASFLWRVRN-DLWAAEETFLEAISA----D---PTNSY----- 505 (536)
Q Consensus 447 ~~GD~deAEe~FeKALeLD-Pdda-------eAL~nLG~~L~e~~G-D~eEAee~feKALeL----D---PdNpe----- 505 (536)
.+||++.|+.+|.|+-.+. .-++ ..+++.|.-++. ++ ++++|..++++|.++ . ...+.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4799999999999998766 3343 345666665555 46 899999999999988 2 22222
Q ss_pred --HHHHHHHHHHHcCCCc
Q 009385 506 --YAANYANFLWNTGGED 521 (536)
Q Consensus 506 --al~NyA~~L~elGr~E 521 (536)
++..++.++...+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~ 101 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYE 101 (278)
T ss_pred HHHHHHHHHHHHcCCChH
Confidence 3667888888877653
No 315
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.69 E-value=3.3 Score=27.65 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHH
Q 009385 436 LLANYAQFLYIVAHDYDRAEEYFK 459 (536)
Q Consensus 436 AL~NLA~lL~e~~GD~deAEe~Fe 459 (536)
+++++|.++. ..||+++|+..++
T Consensus 3 a~~~la~~~~-~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALL-AQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHh
Confidence 3444555544 3555555555443
No 316
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=75.65 E-value=29 Score=39.84 Aligned_cols=106 Identities=20% Similarity=0.223 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 415 DYFRTELLYQTGLAQEPNDP-LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 415 dyeeAee~YqKALeLdPdn~-eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
.++.--..|++++.+.-.++ .++.+|=.+.. ...=.+.|...|.+|-+..-.-.+++..-|.+-+...+|.+-|...|
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~ir-R~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIF 424 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIR-RAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIF 424 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHH-HhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHH
Confidence 56777788888888765554 34555555544 34558899999999987654444555555555555668999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385 494 LEAISADPTNSYYAANYANFLWNTGGED 521 (536)
Q Consensus 494 eKALeLDPdNpeal~NyA~~L~elGr~E 521 (536)
+-.++.-++.|.+-..|..+|.+.++..
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~ 452 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDN 452 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcch
Confidence 9999999999999999999999999763
No 317
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=72.65 E-value=11 Score=38.03 Aligned_cols=46 Identities=30% Similarity=0.430 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 009385 417 FRTELLYQTGLAQ-----EPNDP---LLLANYAQFLYIVAHDYDRAEEYFKRAI 462 (536)
Q Consensus 417 eeAee~YqKALeL-----dPdn~---eAL~NLA~lL~e~~GD~deAEe~FeKAL 462 (536)
++|..+|++|+.+ .|.|| .+..|++.++|+..|+.++|.+..++|+
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3455555555442 34444 2344555555544555555555555554
No 318
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=71.87 E-value=11 Score=42.11 Aligned_cols=51 Identities=16% Similarity=0.263 Sum_probs=45.0
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009385 443 FLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEA 496 (536)
Q Consensus 443 lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKA 496 (536)
.+| .+|+|.++.-|-.=..+++| .+.++..+|.++++.+ +|+||-.++.+.
T Consensus 471 yLy-sqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k-~Y~eA~~~l~~L 521 (549)
T PF07079_consen 471 YLY-SQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENK-RYQEAWEYLQKL 521 (549)
T ss_pred HHH-hcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHh-hHHHHHHHHHhC
Confidence 355 58999999999999999999 9999999999999865 899999998763
No 319
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=71.64 E-value=13 Score=37.47 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009385 451 YDRAEEYFKRAIA-----VEPPDAE---SFSKYASFLWRVRNDLWAAEETFLEAIS 498 (536)
Q Consensus 451 ~deAEe~FeKALe-----LDPddae---AL~nLG~~L~e~~GD~eEAee~feKALe 498 (536)
.++|...|++|+. +.|.||. ...|+++|+++..|+.++|.+..++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3678888888887 4688885 4568899999999999999888877765
No 320
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=71.36 E-value=13 Score=37.98 Aligned_cols=46 Identities=28% Similarity=0.390 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 009385 417 FRTELLYQTGLAQ-----EPNDP---LLLANYAQFLYIVAHDYDRAEEYFKRAI 462 (536)
Q Consensus 417 eeAee~YqKALeL-----dPdn~---eAL~NLA~lL~e~~GD~deAEe~FeKAL 462 (536)
++|.+.|+.|+++ .|.|| .+..|++.++|+..++.++|.+..++|+
T Consensus 145 ~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 145 ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555555555542 34444 2344555555555555555555555444
No 321
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=70.93 E-value=23 Score=37.17 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009385 416 YFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLE 495 (536)
Q Consensus 416 yeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feK 495 (536)
|..=....+++++.. ...++..++..+. ..++++.+++.+++.+..+|-|-.+|..+=.+++. +|+...|+..|++
T Consensus 137 f~~WV~~~R~~l~e~--~~~~l~~lae~~~-~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~ 212 (280)
T COG3629 137 FDEWVLEQRRALEEL--FIKALTKLAEALI-ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHH
Confidence 444444444444432 3556666666655 56788888888888888888888877777655554 5678888888877
Q ss_pred HHH
Q 009385 496 AIS 498 (536)
Q Consensus 496 ALe 498 (536)
.-+
T Consensus 213 l~~ 215 (280)
T COG3629 213 LKK 215 (280)
T ss_pred HHH
Confidence 665
No 322
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=70.54 E-value=11 Score=39.40 Aligned_cols=83 Identities=16% Similarity=0.108 Sum_probs=66.6
Q ss_pred cccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 009385 391 SLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE 470 (536)
Q Consensus 391 ~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddae 470 (536)
....+.+.|+..-+++.+- ..++++.|..+-++.|.++|+++.-+...|.+|. ..|.+.-|.+.+...++.-|+++.
T Consensus 174 a~~~~il~rll~~lk~~~~--~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~-ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 174 ASNREILSRLLRNLKAALL--RELQWELALRVAERLLDLNPEDPYEIRDRGLIYA-QLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred ccHHHHHHHHHHHHHHHHH--HhhchHHHHHHHHHHHhhCCCChhhccCcHHHHH-hcCCchhhHHHHHHHHHhCCCchH
Confidence 4455666666665543321 2379999999999999999999999999998877 689999999999999999999998
Q ss_pred HHHHHH
Q 009385 471 SFSKYA 476 (536)
Q Consensus 471 AL~nLG 476 (536)
+-.--+
T Consensus 251 a~~ir~ 256 (269)
T COG2912 251 AEMIRA 256 (269)
T ss_pred HHHHHH
Confidence 865443
No 323
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=69.92 E-value=54 Score=39.17 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HhcCCHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLW--RVRNDLWAAEE 491 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~--e~~GD~eEAee 491 (536)
+.-.+-+.-++.-+.+++.+...+..|-.+++ ..|++++-...-+++.++.|.++..|..+..-.. -+.++..+++.
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llr-k~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~ 171 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLR-KLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEE 171 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHH-HhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHH
Confidence 45555666777777888888888888877887 6899999888888999999999998887754222 22357889999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385 492 TFLEAISADPTNSYYAANYANFLWNTGG 519 (536)
Q Consensus 492 ~feKALeLDPdNpeal~NyA~~L~elGr 519 (536)
.|++|+- |-+.+.++..++.++...+.
T Consensus 172 ~~ekal~-dy~~v~iw~e~~~y~~~~~~ 198 (881)
T KOG0128|consen 172 LFEKALG-DYNSVPIWEEVVNYLVGFGN 198 (881)
T ss_pred HHHHHhc-ccccchHHHHHHHHHHhccc
Confidence 9999997 56666677778877776665
No 324
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.64 E-value=24 Score=30.72 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=41.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHh
Q 009385 441 AQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS---FLWRVRNDLWAAEETFLEAISA 499 (536)
Q Consensus 441 A~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~---~L~e~~GD~eEAee~feKALeL 499 (536)
|.-+| ..++.++|+..++++|+..++.++-+..+|. ++.+. |+|++++++-.+=+.+
T Consensus 13 GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~-Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 13 GLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEW-GKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44456 4788899999999999999888887777765 44554 5788888776665544
No 325
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.14 E-value=84 Score=32.99 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=65.7
Q ss_pred ccCCHHHHHHHHHHHHHhCCCC-HHHHHH-----HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH------HHHHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPND-PLLLAN-----YAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFS------KYASFL 479 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn-~eAL~N-----LA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~------nLG~~L 479 (536)
+..++++|+.+|+.|-+-.-.+ .....| .|.... ..++|.+|+..|++..+..-+|...-+ .-+.+.
T Consensus 126 dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa-~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLC 204 (288)
T KOG1586|consen 126 DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA-QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLC 204 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHH
Confidence 4579999999999999876543 233333 333223 468899999999999998888864322 222222
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 009385 480 WRVRNDLWAAEETFLEAISADPTNSYY 506 (536)
Q Consensus 480 ~e~~GD~eEAee~feKALeLDPdNpea 506 (536)
...+.|.-.|...+++-.+++|.....
T Consensus 205 hl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 205 HLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred hHhcccHHHHHHHHHHHHhcCCccccc
Confidence 223368888888899999999987654
No 326
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.97 E-value=16 Score=37.74 Aligned_cols=88 Identities=18% Similarity=0.159 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HH-----------
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFL-WR----------- 481 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L-~e----------- 481 (536)
+...+|+...+.-++.+|.|.....-|-++|+ ..|++++|...++-+-+++|++..-...|-... .+
T Consensus 15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlc-vaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~evfag~~ 93 (273)
T COG4455 15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLC-VAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNEVFAGGA 93 (273)
T ss_pred ccHHHHHHHHHHHHhcCCccccchhHHHHHHh-hcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHhccCC
Confidence 68889999999999999999998888888888 699999999999999999999975443333211 11
Q ss_pred ----hcCCHHHHHHHHHHHHHhCCC
Q 009385 482 ----VRNDLWAAEETFLEAISADPT 502 (536)
Q Consensus 482 ----~~GD~eEAee~feKALeLDPd 502 (536)
.+|...+=+..+.+|+++.-+
T Consensus 94 ~Pgflg~p~p~wva~L~aala~h~d 118 (273)
T COG4455 94 VPGFLGGPSPEWVAALLAALALHSD 118 (273)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcccC
Confidence 123456666667777777665
No 327
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=68.83 E-value=4.4 Score=43.79 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009385 436 LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFL 514 (536)
Q Consensus 436 AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L 514 (536)
...|++.... ..+++..|...-..+++.++....+|+..+..+... .++++|++.++.|...+|++..+...+..+-
T Consensus 277 ~~~n~~~~~l-k~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~-~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 277 IRRNLAAVGL-KVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLL-KNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred cccchHHhcc-cccCCCcceeccccccccChhhCcHHHHHHhHHHhh-hchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 4455665544 578888999888888999999999999999877765 4899999999999999999998866655543
No 328
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=68.14 E-value=27 Score=34.74 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 009385 416 YFRTELLYQTGLAQEPN--D----PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA-ESFSKYASFL 479 (536)
Q Consensus 416 yeeAee~YqKALeLdPd--n----~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda-eAL~nLG~~L 479 (536)
+.+|...|.+|++.... . ..+++-+|.+.+ ..|++++|.++|.+++...-... ..+.++|.=+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~r-rlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~ 210 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNR-RLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQ 210 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 45788888888887643 2 456777887777 69999999999999997543332 3555555433
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.02 E-value=6.4 Score=26.25 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009385 470 ESFSKYASFLWRVRNDLWAAEETFLE 495 (536)
Q Consensus 470 eAL~nLG~~L~e~~GD~eEAee~feK 495 (536)
.++.++|.+++.. ||+++|+..+++
T Consensus 2 ~a~~~la~~~~~~-G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQ-GDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHhC
Confidence 5678899988874 799999998863
No 330
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=67.09 E-value=18 Score=37.00 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHH-----hCCCCHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009385 451 YDRAEEYFKRAIA-----VEPPDAES---FSKYASFLWRVRNDLWAAEETFLEAIS 498 (536)
Q Consensus 451 ~deAEe~FeKALe-----LDPddaeA---L~nLG~~L~e~~GD~eEAee~feKALe 498 (536)
.++|...|++|++ +.|.||-- ..|+++|+++..++.++|....++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5688999999987 45888754 468899999999999998866665554
No 331
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=66.49 E-value=46 Score=33.96 Aligned_cols=107 Identities=20% Similarity=0.162 Sum_probs=65.9
Q ss_pred ccccHHHHHHhcCccccccCc---cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH-----
Q 009385 390 ESLDHETMERFVSPVTANIEA---DDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRA----- 461 (536)
Q Consensus 390 ~~lD~ea~krlvspV~AeLep---Dd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKA----- 461 (536)
...+.+.+.++...+. .+.+ +...-..+|++|- +.-...-.|+.++..+|..++ ..+++.+|+.+|-..
T Consensus 45 ~~~~~~~~~rl~~l~~-~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~-~e~~~~~A~~Hfl~~~~~~~ 121 (260)
T PF04190_consen 45 DPVDEESIARLIELIS-LFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLW-KEGNYYEAERHFLLGTDPSA 121 (260)
T ss_dssp ---SHHHHHHHHHHHH-HS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHH-HTT-HHHHHHHHHTS-HHHH
T ss_pred CCCCHHHHHHHHHHHH-hCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHH-hhccHHHHHHHHHhcCChhH
Confidence 3566777777776553 2222 2223344566666 333334468999999999988 589999999886321
Q ss_pred -----------HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009385 462 -----------IAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISA 499 (536)
Q Consensus 462 -----------LeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeL 499 (536)
.+-+|...+.+..-|++.+...++..-|...+..-++.
T Consensus 122 ~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 122 FAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 24467888888888887777668899999877776665
No 332
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.87 E-value=31 Score=32.92 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 009385 451 YDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNS 504 (536)
Q Consensus 451 ~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNp 504 (536)
.+..++..++.++..| ++.++.+++.++.. .|+.++|+...+++..+-|.+.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCcHH
Confidence 4455566777888788 78899999987776 5799999999999999999543
No 333
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.30 E-value=21 Score=39.30 Aligned_cols=102 Identities=15% Similarity=0.063 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-----C--
Q 009385 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHD---YDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR-----N-- 484 (536)
Q Consensus 415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD---~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~-----G-- 484 (536)
++..-+++..++|+.||.|-.+|...-.+....... ..+-+.+..++|.-++.|-.+|.+-..++-..- |
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~ 205 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNF 205 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCcc
Confidence 688889999999999999999997654333333333 667788899999999999999999887775221 2
Q ss_pred ----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385 485 ----DLWAAEETFLEAISADPTNSYYAANYANFLWN 516 (536)
Q Consensus 485 ----D~eEAee~feKALeLDPdNpeal~NyA~~L~e 516 (536)
.+..-.++...|+-.||++..+++.+-+++.+
T Consensus 206 ~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 206 MPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred CCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 24556778888999999999887776555543
No 334
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.05 E-value=44 Score=35.19 Aligned_cols=56 Identities=11% Similarity=0.165 Sum_probs=34.2
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009385 443 FLYIVAHDYDRAEEYFKRAIAVEPPDAE------SFSKYASFLWRVRNDLWAAEETFLEAISA 499 (536)
Q Consensus 443 lL~e~~GD~deAEe~FeKALeLDPddae------AL~nLG~~L~e~~GD~eEAee~feKALeL 499 (536)
..|...+++++|..++++|++..-+|.. ++-..|.++-+. ..+.|+..+|+||..+
T Consensus 39 vafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~-~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKEL-SKLSEVVDLYEKASEL 100 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH
Confidence 3444678888888888888876655532 222333333333 3567777777777654
No 335
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.42 E-value=44 Score=38.12 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=55.2
Q ss_pred CCCCHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 009385 430 EPNDPLLL-ANYAQFLYIVAHDYDRAEEYFKRAIAV---EPPD----AESFSKYASFLWRVRNDLWAAEETFLEAISADP 501 (536)
Q Consensus 430 dPdn~eAL-~NLA~lL~e~~GD~deAEe~FeKALeL---DPdd----aeAL~nLG~~L~e~~GD~eEAee~feKALeLDP 501 (536)
|+++..+. +-+|.++. ..|+...|..+|+..++. .-+| |.|++.+|.+++..+|-..+|.+++++|-+-..
T Consensus 444 d~Dd~~lk~lL~g~~lR-~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILR-NLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred CchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 45444433 34566666 689999999999999832 2222 578999999999977669999999999998765
Q ss_pred CC
Q 009385 502 TN 503 (536)
Q Consensus 502 dN 503 (536)
++
T Consensus 523 dY 524 (546)
T KOG3783|consen 523 DY 524 (546)
T ss_pred cc
Confidence 54
No 336
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=63.70 E-value=12 Score=25.38 Aligned_cols=30 Identities=20% Similarity=0.032 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhc---CCHHHHHHHHHHHHHh
Q 009385 470 ESFSKYASFLWRVR---NDLWAAEETFLEAISA 499 (536)
Q Consensus 470 eAL~nLG~~L~e~~---GD~eEAee~feKALeL 499 (536)
.+.+.||.++..-. .|.++|..+|++|.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 35566666554321 2677777777777654
No 337
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.22 E-value=45 Score=39.11 Aligned_cols=85 Identities=14% Similarity=0.126 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPL------LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLW 487 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~e------AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~e 487 (536)
.+|..++++|..-+...|.|.. ...+++. +|....++|+|.++++.|=+.||.++--....-..... .+.-+
T Consensus 368 ~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~-CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~-E~~Se 445 (872)
T KOG4814|consen 368 EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQV-CYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA-EDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH-hcchH
Confidence 6999999999999999887753 3445553 44467899999999999999999998765444333332 35789
Q ss_pred HHHHHHHHHHHhC
Q 009385 488 AAEETFLEAISAD 500 (536)
Q Consensus 488 EAee~feKALeLD 500 (536)
+|..+..+.....
T Consensus 446 ~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 446 EALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHHhhh
Confidence 9998888776643
No 338
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=62.37 E-value=91 Score=35.39 Aligned_cols=86 Identities=17% Similarity=0.095 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHH-hCCC---CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHhcC
Q 009385 415 DYFRTELLYQTGLA-QEPN---DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE--PPDAES----FSKYASFLWRVRN 484 (536)
Q Consensus 415 dyeeAee~YqKALe-LdPd---n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD--PddaeA----L~nLG~~L~e~~G 484 (536)
-..-|+.+++.+++ ..+. ...+.+.||.+|+....+++.|+.++.|++.+. ++..+. ...++.++...
T Consensus 36 LI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~-- 113 (608)
T PF10345_consen 36 LIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKT-- 113 (608)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc--
Confidence 34568888888885 2222 245677899999888899999999999998887 444433 23445555442
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 009385 485 DLWAAEETFLEAISADPT 502 (536)
Q Consensus 485 D~eEAee~feKALeLDPd 502 (536)
+...|..+.+++++.--+
T Consensus 114 ~~~~a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 114 NPKAALKNLDKAIEDSET 131 (608)
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 466699999999986544
No 339
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=61.14 E-value=52 Score=31.68 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHH----HHHHHHhcC
Q 009385 414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE--PPDAESFSKY----ASFLWRVRN 484 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD--PddaeAL~nL----G~~L~e~~G 484 (536)
|+++.|.++|.++...--.. .+.++++-.+.. ..+|+.....+..+|-.+- ++|.+..+.+ |..+. ..+
T Consensus 50 Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i-~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l-~~r 127 (177)
T PF10602_consen 50 GDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI-FFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANL-AQR 127 (177)
T ss_pred hhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-Hhc
Confidence 77777777777766653322 133344444444 4677777777777665543 4445544433 22232 345
Q ss_pred CHHHHHHHHHHHHHhC
Q 009385 485 DLWAAEETFLEAISAD 500 (536)
Q Consensus 485 D~eEAee~feKALeLD 500 (536)
+|.+|-..|..++.-.
T Consensus 128 ~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 128 DFKEAAELFLDSLSTF 143 (177)
T ss_pred hHHHHHHHHHccCcCC
Confidence 7777777776665443
No 340
>PF09655 Nitr_red_assoc: Conserved nitrate reductase-associated protein (Nitr_red_assoc); InterPro: IPR013481 Proteins in this entry are found in the Cyanobacteria, and are mostly encoded near nitrate reductase and molybdopterin biosynthesis genes. Molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. These proteins are sometimes annotated as nitrate reductase-associated proteins, though their function is unknown.
Probab=60.46 E-value=5.5 Score=38.01 Aligned_cols=56 Identities=18% Similarity=0.397 Sum_probs=39.2
Q ss_pred hhhhhhhhcccCC-CCCCCCCCCCCCCCCCchhhhhhhhhhhcccccccchhHHHHHHHHhhhh
Q 009385 106 ENETNCRDNAVNS-ESESRDSRDGFVDPPWEEDEIIQESIERKANSVDLPLSLRIIKRKLQWQD 168 (536)
Q Consensus 106 ~f~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~er~~~~v~~p~slr~~krk~~~~e 168 (536)
.|-..+++|.... +....++.++..+ +|-....+|..|..||...++++++. ||.+
T Consensus 59 ~yr~~L~~li~~~~~~~~~~l~~~~~p-~W~~~~~vP~~v~~ka~~~gv~~t~~------qW~~ 115 (144)
T PF09655_consen 59 NYREFLQELIRTHAGGPAKDLPPDPNP-AWQDPDAVPEAVQEKAQEFGVPLTLE------QWAA 115 (144)
T ss_pred HHHHHHHHHHHHHhCCCcccCCCCCCc-cccccCcCcHHHHHHHHHcCCCCCHH------HHhc
Confidence 3445566666332 2234556665544 79666899999999999999999974 8887
No 341
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.22 E-value=60 Score=34.82 Aligned_cols=32 Identities=28% Similarity=0.217 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHH
Q 009385 473 SKYASFLWRVRNDLWAAEETFLEAISADPT-NSY 505 (536)
Q Consensus 473 ~nLG~~L~e~~GD~eEAee~feKALeLDPd-Npe 505 (536)
+.+...+.+ +|-+..|.++.+-.+.+||. ||.
T Consensus 107 ~r~i~~L~~-RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 107 FRYIQSLGR-RGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred HHHHHHHHh-cCcHHHHHHHHHHHHhcCCCCCcc
Confidence 334444433 45666666666666666666 554
No 342
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=59.08 E-value=45 Score=33.88 Aligned_cols=85 Identities=16% Similarity=0.186 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCHHHH
Q 009385 432 NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR----NDLWAAEETFLEAISADPTNSYYA 507 (536)
Q Consensus 432 dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~----GD~eEAee~feKALeLDPdNpeal 507 (536)
..|+.-..|+..+.-.++++++|.+.|+.--. +-.++..-+.||..+..-+ +++..|+++|+.|.. -+.+.+.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCd-en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC 108 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCD-ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQAC 108 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHH
Confidence 45667777787666567899999999987654 3456788888887444322 379999999999987 5678888
Q ss_pred HHHHHHHHHcCC
Q 009385 508 ANYANFLWNTGG 519 (536)
Q Consensus 508 ~NyA~~L~elGr 519 (536)
.+++.++|.-..
T Consensus 109 ~~~gLl~~~g~~ 120 (248)
T KOG4014|consen 109 RYLGLLHWNGEK 120 (248)
T ss_pred hhhhhhhccCcC
Confidence 899988876543
No 343
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.16 E-value=79 Score=36.11 Aligned_cols=99 Identities=19% Similarity=0.205 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHHhCCC-CH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPN-DP--LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD----------AESFSKYASFLW 480 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPd-n~--eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd----------aeAL~nLG~~L~ 480 (536)
+.|+.|+..|..|+++--. +. .+..|+|..|. ..+ +++.+|+-.=.+.|.| +.+++.+|.+.+
T Consensus 381 ~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL-~~~---~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf 456 (629)
T KOG2300|consen 381 NCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL-RIG---DAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAF 456 (629)
T ss_pred chHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH-Hhc---cHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 7899999999999987543 33 34456776655 444 5566666666678875 356788888887
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHcCC
Q 009385 481 RVRNDLWAAEETFLEAISADPTNSY--------YAANYANFLWNTGG 519 (536)
Q Consensus 481 e~~GD~eEAee~feKALeLDPdNpe--------al~NyA~~L~elGr 519 (536)
.+ +++.||+...++.+++. |++ .+.-++++..-.|+
T Consensus 457 ~q-n~lnEaK~~l~e~Lkma--naed~~rL~a~~LvLLs~v~lslgn 500 (629)
T KOG2300|consen 457 KQ-NDLNEAKRFLRETLKMA--NAEDLNRLTACSLVLLSHVFLSLGN 500 (629)
T ss_pred Hh-ccHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHHHHHHhcc
Confidence 75 69999999999999986 333 23445666666654
No 344
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.84 E-value=66 Score=37.26 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHhcC--C
Q 009385 414 ADYFRTELLYQTGLAQEPN-DPLLLANYAQFLYIVAHDYDRAEEYFKRA-----IAVEPPDAESFSKYASFLWRVRN--D 485 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPd-n~eAL~NLA~lL~e~~GD~deAEe~FeKA-----LeLDPddaeAL~nLG~~L~e~~G--D 485 (536)
|.+.-|.++.+-.+.++|. ||.+...+-.+|....++|+=-+..++.. |..-|+.+..+ .+|.++..... +
T Consensus 356 GC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~-AlA~f~l~~~~~~~ 434 (665)
T KOG2422|consen 356 GCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSL-ALARFFLRKNEEDD 434 (665)
T ss_pred CChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHH-HHHHHHHhcCChhh
Confidence 7888999999999999999 88776665555555567776666666655 45557776553 35566655432 2
Q ss_pred HHHHHHHHHHHHHhCC
Q 009385 486 LWAAEETFLEAISADP 501 (536)
Q Consensus 486 ~eEAee~feKALeLDP 501 (536)
...|...+.+|+.+-|
T Consensus 435 rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 435 RQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 6789999999999988
No 345
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=56.02 E-value=95 Score=29.88 Aligned_cols=85 Identities=12% Similarity=-0.067 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHH--
Q 009385 434 PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA---ESFSKYASFLWRVRNDLWAAEETFLEAISAD--PTNSYY-- 506 (536)
Q Consensus 434 ~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda---eAL~nLG~~L~e~~GD~eEAee~feKALeLD--PdNpea-- 506 (536)
..++..+|.+++ ..||++.|.++|.++.+..-... +.+.++-.+.... +|+.....++.+|-.+- +++...
T Consensus 36 r~~~~~l~~~~~-~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~-~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 36 RMALEDLADHYC-KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFF-GDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 467888999888 68999999999999888654433 3334443444443 58999999999988763 233332
Q ss_pred --HHHHHHHHHHcCCC
Q 009385 507 --AANYANFLWNTGGE 520 (536)
Q Consensus 507 --l~NyA~~L~elGr~ 520 (536)
...-|.++...+++
T Consensus 114 rlk~~~gL~~l~~r~f 129 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDF 129 (177)
T ss_pred HHHHHHHHHHHHhchH
Confidence 22344445555554
No 346
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=55.16 E-value=19 Score=36.64 Aligned_cols=91 Identities=16% Similarity=0.095 Sum_probs=49.5
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHH------------HHHHHHHHHHHhCC-HHHH-HHHHHHHHH-hC-CCCHH--HHH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLL------------LANYAQFLYIVAHD-YDRA-EEYFKRAIA-VE-PPDAE--SFS 473 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eA------------L~NLA~lL~e~~GD-~deA-Ee~FeKALe-LD-Pddae--AL~ 473 (536)
|-|+|+.|+++...||+.+=.-|+- ..+.+...+ ..|. ++-+ ...+..... .+ |+... .|-
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~-~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAA-SAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHH-HcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 6699999999999999997332221 112222222 1232 1111 111222211 11 33333 344
Q ss_pred HHHHHHHH--------hcCCHHHHHHHHHHHHHhCCCC
Q 009385 474 KYASFLWR--------VRNDLWAAEETFLEAISADPTN 503 (536)
Q Consensus 474 nLG~~L~e--------~~GD~eEAee~feKALeLDPdN 503 (536)
..|..+.. -.+++.+|..++++|++++|+-
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 45554421 1247889999999999999874
No 347
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=54.53 E-value=21 Score=26.69 Aligned_cols=29 Identities=10% Similarity=0.166 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009385 470 ESFSKYASFLWRVRNDLWAAEETFLEAISA 499 (536)
Q Consensus 470 eAL~nLG~~L~e~~GD~eEAee~feKALeL 499 (536)
++|..||.+-.+. ++|++|+.-|++|+++
T Consensus 2 dv~~~Lgeisle~-e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLEN-ENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHh-ccHHHHHHHHHHHHHH
Confidence 4566677666553 4777777777777765
No 348
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=53.31 E-value=35 Score=37.33 Aligned_cols=48 Identities=17% Similarity=0.000 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 009385 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE 465 (536)
Q Consensus 415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD 465 (536)
+..+-++....||+++|..+.+|..+|. +..--..+|++.|++||+..
T Consensus 199 np~~RI~~A~~ALeIN~eCA~AyvLLAE---EEa~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 199 NPPARIKAAYQALEINNECATAYVLLAE---EEATTIVDAERLFKQALKAG 246 (556)
T ss_pred CcHHHHHHHHHHHhcCchhhhHHHhhhh---hhhhhHHHHHHHHHHHHHHH
Confidence 4444566667788888888888876663 23345678888888888753
No 349
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=52.69 E-value=36 Score=27.43 Aligned_cols=17 Identities=41% Similarity=0.599 Sum_probs=9.1
Q ss_pred HhCCHHHHHHHHHHHHH
Q 009385 447 VAHDYDRAEEYFKRAIA 463 (536)
Q Consensus 447 ~~GD~deAEe~FeKALe 463 (536)
..|++++|..+|.+|++
T Consensus 17 ~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIE 33 (69)
T ss_dssp HTTSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 35555555555555543
No 350
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=51.00 E-value=27 Score=25.53 Aligned_cols=26 Identities=35% Similarity=0.749 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009385 450 DYDRAEEYFKRAIAVEPPDAESFSKYA 476 (536)
Q Consensus 450 D~deAEe~FeKALeLDPddaeAL~nLG 476 (536)
++++|...|++.+...|+ +..|..+|
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 345555555555555543 44444444
No 351
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.63 E-value=1.3e+02 Score=30.47 Aligned_cols=101 Identities=16% Similarity=0.085 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHH
Q 009385 418 RTELLYQTGLAQEPNDPLL---LANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 418 eAee~YqKALeLdPdn~eA---L~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eEAee 491 (536)
+.....++-+..+|....+ ...+|.... ..+++++|+..++.++..--+. +-+-.+||.++... |.+++|..
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~v-e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~-~k~D~AL~ 147 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEV-EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQ-KKADAALK 147 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHh-hhHHHHHH
Confidence 4444555556666554432 233555566 4899999999999999643332 23456788888875 58999998
Q ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCCcc
Q 009385 492 TFLEAISADPT-NSYYAANYANFLWNTGGEDT 522 (536)
Q Consensus 492 ~feKALeLDPd-Npeal~NyA~~L~elGr~E~ 522 (536)
.+..... ++ .+.+..-.|.+|...|+-+.
T Consensus 148 ~L~t~~~--~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 148 TLDTIKE--ESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHhcccc--ccHHHHHHHHhhhHHHHcCchHH
Confidence 8765432 22 12235567888888887543
No 352
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=50.36 E-value=86 Score=41.42 Aligned_cols=99 Identities=13% Similarity=0.100 Sum_probs=66.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD-----------------AESFSKY 475 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd-----------------aeAL~nL 475 (536)
.|.++.|..+.-+|.+.. -++++...|.+++ ..||...|..++++.++.+-.+ ..+...+
T Consensus 1683 aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW-~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~ 1759 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR--LPEIVLERAKLLW-QTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKI 1759 (2382)
T ss_pred cccHHHHHHHHHhhhhcc--cchHHHHHHHHHH-hhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHH
Confidence 478888888888888877 4677777888888 5888889999999888665222 1223334
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009385 476 ASFLWRVRN-DLWAAEETFLEAISADPTNSYYAANYANFL 514 (536)
Q Consensus 476 G~~L~e~~G-D~eEAee~feKALeLDPdNpeal~NyA~~L 514 (536)
+..+-+.++ ..+.-+++|..|.++.|.....++.+|.++
T Consensus 1760 ~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1760 TKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 433333221 234567788889888886666666666554
No 353
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=50.23 E-value=35 Score=23.58 Aligned_cols=30 Identities=13% Similarity=0.081 Sum_probs=16.6
Q ss_pred HHHHHHH--HHHHHhc----CCHHHHHHHHHHHHHh
Q 009385 470 ESFSKYA--SFLWRVR----NDLWAAEETFLEAISA 499 (536)
Q Consensus 470 eAL~nLG--~~L~e~~----GD~eEAee~feKALeL 499 (536)
++.++|| .++.... .|+++|..+|++|.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4556666 3333321 1467777777777654
No 354
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=49.87 E-value=94 Score=34.19 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHhC
Q 009385 414 ADYFRTELLYQTGLAQE 430 (536)
Q Consensus 414 gdyeeAee~YqKALeLd 430 (536)
.-..+|+.++++||+..
T Consensus 230 ~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 230 TTIVDAERLFKQALKAG 246 (556)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 56778999999998863
No 355
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=49.77 E-value=1.1e+02 Score=37.17 Aligned_cols=92 Identities=14% Similarity=0.052 Sum_probs=70.4
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH-------HHHHHHHHhcC
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFS-------KYASFLWRVRN 484 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~-------nLG~~L~e~~G 484 (536)
|...+++|+.-|++.-. .|.-|.=|.+.|.+|. ..|++++-+++|+-|++..|++|..-. .+=..++.
T Consensus 531 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 605 (932)
T PRK13184 531 DPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQ-RLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--- 605 (932)
T ss_pred ChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHH-HhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH---
Confidence 44578889988887544 7888888888887765 799999999999999999999996533 22223332
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHH
Q 009385 485 DLWAAEETFLEAISADPTNSYYAA 508 (536)
Q Consensus 485 D~eEAee~feKALeLDPdNpeal~ 508 (536)
+..+|.....-|+...|.......
T Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~ 629 (932)
T PRK13184 606 HRREALVFMLLALWIAPEKISSRE 629 (932)
T ss_pred HHHHHHHHHHHHHHhCcccccchH
Confidence 357888899999999998765543
No 356
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=49.77 E-value=1.3e+02 Score=31.53 Aligned_cols=67 Identities=18% Similarity=0.089 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cC-----------------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009385 453 RAEEYFKRAIAVEPPDAESFSKYASFLWRV----RN-----------------DLWAAEETFLEAISADPTNSYYAANYA 511 (536)
Q Consensus 453 eAEe~FeKALeLDPddaeAL~nLG~~L~e~----~G-----------------D~eEAee~feKALeLDPdNpeal~NyA 511 (536)
.-...++.=++..|+...++..+|.++.+. +| -.+.|..++.+|++++|..+.+...+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 356666777788999999998888765432 11 268899999999999999988876666
Q ss_pred HHHHHcCC
Q 009385 512 NFLWNTGG 519 (536)
Q Consensus 512 ~~L~elGr 519 (536)
++-...|+
T Consensus 141 ~~s~~fge 148 (277)
T PF13226_consen 141 NISAYFGE 148 (277)
T ss_pred HHHhhcCC
Confidence 65555554
No 357
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.62 E-value=3.1e+02 Score=28.18 Aligned_cols=88 Identities=18% Similarity=0.284 Sum_probs=62.5
Q ss_pred CCChHHHHHHHHHHHHHHhccccccccccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009385 365 QVDREEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFL 444 (536)
Q Consensus 365 ~~~~e~EvaLwnsmvaEA~~mQ~~d~~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL 444 (536)
+.++.+...|...||.-|.. |..+|..-+++|...++ ..|.-.++..++++.|+ .|=|+..+..-+
T Consensus 104 ~~~d~~s~~ll~AmIaAAka----DGhIDe~ERa~I~~~l~------esG~d~e~~~~le~El~-~PlD~~~ia~~a--- 169 (225)
T COG2979 104 ATEDEFSLTLLRAMIAAAKA----DGHIDEKERARIMQKLQ------ESGVDPEAQAFLEQELE-QPLDPDEIAAAA--- 169 (225)
T ss_pred cccchHHHHHHHHHHHHHhh----cCCcCHHHHHHHHHHHH------HcCCCHHHHHHHHHHHh-CCCCHHHHHHHh---
Confidence 44567788899999998775 88888888888876662 12677889999999998 788888764322
Q ss_pred HHHhCCHHHHHHHH-HHHHHhCCCCHH
Q 009385 445 YIVAHDYDRAEEYF-KRAIAVEPPDAE 470 (536)
Q Consensus 445 ~e~~GD~deAEe~F-eKALeLDPddae 470 (536)
+..++|.+.| ---+.+||++-.
T Consensus 170 ----~~ee~a~ElY~ASrl~id~d~r~ 192 (225)
T COG2979 170 ----RNEEQALELYLASRLAIDDDSRM 192 (225)
T ss_pred ----cCHHHHHHHHHHHHHhcCchhHH
Confidence 3344555544 455667777654
No 358
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=49.26 E-value=1.9e+02 Score=32.90 Aligned_cols=95 Identities=16% Similarity=0.088 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCCC---CHHHHHHHHHHHHHhcCCHHHHH
Q 009385 417 FRTELLYQTGLAQEP--NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIA-VEPP---DAESFSKYASFLWRVRNDLWAAE 490 (536)
Q Consensus 417 eeAee~YqKALeLdP--dn~eAL~NLA~lL~e~~GD~deAEe~FeKALe-LDPd---daeAL~nLG~~L~e~~GD~eEAe 490 (536)
.-|++++.+|-..-+ .+..-+..|-.+ ...|++|++-+++ ..+. .+.++..||.+|++.-.++++|+
T Consensus 8 ~lAeey~~~A~~~~~~~~~~~~l~~Y~kL-------I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae 80 (608)
T PF10345_consen 8 SLAEEYLEKAHSLATKVKSEEQLKQYYKL-------IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAE 80 (608)
T ss_pred HHHHHHHHHhHHHHHhcCChhhHHHHHHH-------HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 346666666654433 233444444433 4489999999994 3322 24578899999997778999999
Q ss_pred HHHHHHHHhCC--CCHHH----HHHHHHHHHHcC
Q 009385 491 ETFLEAISADP--TNSYY----AANYANFLWNTG 518 (536)
Q Consensus 491 e~feKALeLDP--dNpea----l~NyA~~L~elG 518 (536)
.++.||+.+.- +..+. .+-++.++.+.+
T Consensus 81 ~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~ 114 (608)
T PF10345_consen 81 TYLEKAILLCERHRLTDLKFRCQFLLARIYFKTN 114 (608)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHHhcC
Confidence 99999998874 33333 233455555554
No 359
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=49.09 E-value=28 Score=25.95 Aligned_cols=30 Identities=10% Similarity=0.277 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 009385 435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAVE 465 (536)
Q Consensus 435 eAL~NLA~lL~e~~GD~deAEe~FeKALeLD 465 (536)
++|..+|.+-. ..++|++|...|+++|++.
T Consensus 2 dv~~~Lgeisl-e~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISL-ENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Confidence 45667888766 4799999999999999863
No 360
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=48.82 E-value=58 Score=36.94 Aligned_cols=50 Identities=26% Similarity=0.268 Sum_probs=24.4
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009385 447 VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAI 497 (536)
Q Consensus 447 ~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKAL 497 (536)
..||+.-|-..|+-.+...|+++...+.|-.+|... +|-+.|.++|++++
T Consensus 444 ~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~i-nde~naraLFetsv 493 (660)
T COG5107 444 ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRI-NDEENARALFETSV 493 (660)
T ss_pred hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHh-CcHHHHHHHHHHhH
Confidence 345555555555555555555554444444444433 34455555555444
No 361
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=48.74 E-value=37 Score=29.04 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhCCCCHH
Q 009385 488 AAEETFLEAISADPTNSY 505 (536)
Q Consensus 488 EAee~feKALeLDPdNpe 505 (536)
+|++.+.+++...||++.
T Consensus 31 ~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 31 KAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHhCCChHH
Confidence 344444444445555553
No 362
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.83 E-value=1.6e+02 Score=31.49 Aligned_cols=62 Identities=21% Similarity=0.189 Sum_probs=43.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcC
Q 009385 456 EYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADP--TNSYYAANYANFLWNTG 518 (536)
Q Consensus 456 e~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDP--dNpeal~NyA~~L~elG 518 (536)
..+++.+..||+|.++-+.+|..+.. .|++++|.+.+-..++.|- ++..+.-.+-.++.-.|
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~-~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHL-VGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 45677778899999998888886654 5788888888888887754 23445555555554444
No 363
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=45.60 E-value=62 Score=34.02 Aligned_cols=80 Identities=11% Similarity=0.037 Sum_probs=60.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~ 492 (536)
.++++.++..+++.+.++|-+-.+|..+=.+++ ..|+...|+..|++.-.. +..-+- . .--.++...
T Consensus 166 ~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~-~~g~~~~ai~~y~~l~~~----------~~edlg-i-~P~~~~~~~ 232 (280)
T COG3629 166 CGRADAVIEHLERLIELDPYDEPAYLRLMEAYL-VNGRQSAAIRAYRQLKKT----------LAEELG-I-DPAPELRAL 232 (280)
T ss_pred cccHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCchHHHHHHHHHHHH----------hhhhcC-C-CccHHHHHH
Confidence 378999999999999999999999988777777 689999999999988764 111111 0 124677777
Q ss_pred HHHHHHhCCCCHH
Q 009385 493 FLEAISADPTNSY 505 (536)
Q Consensus 493 feKALeLDPdNpe 505 (536)
|.+++..+|.+..
T Consensus 233 y~~~~~~~~~~~~ 245 (280)
T COG3629 233 YEEILRQDPLDNK 245 (280)
T ss_pred HHHHhcccccccc
Confidence 8888777776543
No 364
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=45.25 E-value=93 Score=32.39 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=52.2
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 009385 447 VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYY 506 (536)
Q Consensus 447 ~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpea 506 (536)
..+.+++|+...+.-++.+|.|+.....|=.+|.. .|++++|..-++-+-+++|++..-
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcv-aGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCV-AGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhh-cchHHHHHHHHHHHhhcCcccchH
Confidence 36889999999999999999999988888777765 579999999999999999998754
No 365
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.22 E-value=76 Score=37.09 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 009385 431 PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAI 462 (536)
Q Consensus 431 Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKAL 462 (536)
-++..=|-.||.+.. ..+++..|.+||.+|-
T Consensus 663 ~~s~~Kw~~Lg~~al-~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 663 ANSEVKWRQLGDAAL-SAGELPLASECFLRAR 693 (794)
T ss_pred hcchHHHHHHHHHHh-hcccchhHHHHHHhhc
Confidence 344555555665544 4566666666666654
No 366
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=45.00 E-value=38 Score=24.78 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385 415 DYFRTELLYQTGLAQEPNDPLLLANYAQF 443 (536)
Q Consensus 415 dyeeAee~YqKALeLdPdn~eAL~NLA~l 443 (536)
++++|...|++.+...|+ +..|..||.+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkF 29 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKF 29 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHh
Confidence 689999999999999984 8899888865
No 367
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.27 E-value=2.2e+02 Score=30.82 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH--HHHHHHHH--HHHHhCCHHHHHHHHHHHHHh
Q 009385 414 ADYFRTELLYQTGLAQEPNDPL--LLANYAQF--LYIVAHDYDRAEEYFKRAIAV 464 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~e--AL~NLA~l--L~e~~GD~deAEe~FeKALeL 464 (536)
++|..|.+.+...+..-|.+.. .+..+... ++ ..-|+++|.+++++.+..
T Consensus 145 ~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~W-D~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 145 YDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAW-DRFDHKEALEYLEKLLKR 198 (379)
T ss_pred CCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHH
Confidence 6888888888887775333333 34444332 23 356788888888876653
No 368
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=44.25 E-value=48 Score=28.26 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=11.2
Q ss_pred HhCCHHHHHHHHHHHHH
Q 009385 447 VAHDYDRAEEYFKRAIA 463 (536)
Q Consensus 447 ~~GD~deAEe~FeKALe 463 (536)
..|+|++|..+|+.|++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 45667777776666664
No 369
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=43.31 E-value=1.6e+02 Score=35.83 Aligned_cols=91 Identities=12% Similarity=-0.001 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHH---hC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 009385 414 ADYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIV---AH---DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRN 484 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~---eAL~NLA~lL~e~---~G---D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~G 484 (536)
+.|++|+..|++.-.--|+-. ++.+-.|..+.+. .+ ++++|...|++.- -.|.-|--|..-|.+|.. .|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~ 566 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQR-LG 566 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHH-hh
Confidence 789999999999999888754 5667677655432 22 4777888887753 345555555555555544 57
Q ss_pred CHHHHHHHHHHHHHhCCCCHHH
Q 009385 485 DLWAAEETFLEAISADPTNSYY 506 (536)
Q Consensus 485 D~eEAee~feKALeLDPdNpea 506 (536)
+++|=+++|.-|++--|++|++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 567 EYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred hHHHHHHHHHHHHHhcCCCCcc
Confidence 9999999999999999999975
No 370
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=43.11 E-value=1.3e+02 Score=34.85 Aligned_cols=45 Identities=29% Similarity=0.245 Sum_probs=29.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFK 459 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~Fe 459 (536)
|-+..++|..+|++.+..+|+ ..++.+|+-++ ..|-..+|...++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~ 98 (578)
T PRK15490 54 DVNETERAYALYETLIAQNND--EARYEYARRLY-NTGLAKDAQLILK 98 (578)
T ss_pred hhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHH-hhhhhhHHHHHHH
Confidence 445666777777777777776 55666666666 4666666666666
No 371
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=41.94 E-value=1.7e+02 Score=28.38 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
++..+-+.+|.+.=. . .=|.++|.-..-.+|+.|+-++.+....+-+-.+|+.+..+|..|-.. |+..+|.+++
T Consensus 70 ~NlKrVi~C~~~~n~---~--se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~kl-g~~r~~~ell 143 (161)
T PF09205_consen 70 GNLKRVIECYAKRNK---L--SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKL-GNTREANELL 143 (161)
T ss_dssp S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHT-T-HHHHHHHH
T ss_pred cchHHHHHHHHHhcc---h--HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHh-cchhhHHHHH
Confidence 678888888765422 1 224445543333578899999999998877778899999999988775 6999999999
Q ss_pred HHHHHh
Q 009385 494 LEAISA 499 (536)
Q Consensus 494 eKALeL 499 (536)
.+|.+-
T Consensus 144 ~~ACek 149 (161)
T PF09205_consen 144 KEACEK 149 (161)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999874
No 372
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=41.92 E-value=66 Score=30.41 Aligned_cols=50 Identities=22% Similarity=0.206 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 009385 432 NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482 (536)
Q Consensus 432 dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~ 482 (536)
...+.....|+-.+ ..||+.-|.+....++..+|+|.++....+.+|-..
T Consensus 68 GG~d~vl~~A~~~~-~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 68 GGADKVLERAQAAL-AAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp TCHHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 34566666676656 578888888888888888888888888887766543
No 373
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=41.80 E-value=2.6e+02 Score=30.88 Aligned_cols=92 Identities=17% Similarity=0.104 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV--EPPDAESFSKYASFLWRVRNDLWAAEE 491 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL--DPddaeAL~nLG~~L~e~~GD~eEAee 491 (536)
.|+..-..+|.....+.|+ |.+-.|.|..+.+..| .+.+....+....- =-++...+..-|.+|.+. |+.+||..
T Consensus 310 tDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~G-p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rL-gr~~eAr~ 386 (415)
T COG4941 310 TDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREG-PAAGLAMVEALLARPRLDGYHLYHAARADLLARL-GRVEEARA 386 (415)
T ss_pred CChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhh-HHhHHHHHHHhhcccccccccccHHHHHHHHHHh-CChHHHHH
Confidence 5888888888888888885 5555566766664333 44566655555443 123344566678888765 69999999
Q ss_pred HHHHHHHhCCCCHHHHH
Q 009385 492 TFLEAISADPTNSYYAA 508 (536)
Q Consensus 492 ~feKALeLDPdNpeal~ 508 (536)
.|++|+.+.++.++..+
T Consensus 387 aydrAi~La~~~aer~~ 403 (415)
T COG4941 387 AYDRAIALARNAAERAF 403 (415)
T ss_pred HHHHHHHhcCChHHHHH
Confidence 99999999999887544
No 374
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=41.20 E-value=1.2e+02 Score=28.76 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQF 443 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~l 443 (536)
|++.-|..+...++..+|+|..+..-.+.+
T Consensus 84 gd~~wA~~L~d~l~~adp~n~~ar~l~A~a 113 (141)
T PF14863_consen 84 GDYQWAAELLDHLVFADPDNEEARQLKADA 113 (141)
T ss_dssp T-HHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 455555555555555555555544444443
No 375
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=41.12 E-value=28 Score=37.86 Aligned_cols=64 Identities=17% Similarity=0.110 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASF 478 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~ 478 (536)
+++..|...-..+++.++....+++-.+..+. ...++++|++.++.+....|++......+...
T Consensus 289 ~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~-~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 289 KGRGGARFRTNEALRDERSKTKAHYRRGQAYK-LLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred cCCCcceeccccccccChhhCcHHHHHHhHHH-hhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 45556666666777789999999999998877 68999999999999999999999988777653
No 376
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=39.70 E-value=3.2e+02 Score=29.68 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=63.1
Q ss_pred ccHHHHHHhcCccccccCcccc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 009385 392 LDHETMERFVSPVTANIEADDY-----ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEP 466 (536)
Q Consensus 392 lD~ea~krlvspV~AeLepDd~-----gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDP 466 (536)
+.-+-+++++...+...-++.+ +..+.++..|.+.+- ..+..+. ..|.+.+|..+-++++.+||
T Consensus 242 ltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllg----------kva~~yl-e~g~~neAi~l~qr~ltldp 310 (361)
T COG3947 242 LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLG----------KVARAYL-EAGKPNEAIQLHQRALTLDP 310 (361)
T ss_pred cCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHH----------HHHHHHH-HcCChHHHHHHHHHHhhcCh
Confidence 6666777777766444433322 455556666655442 2333333 58999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009385 467 PDAESFSKYASFLWRVRNDLWAAEETFLEA 496 (536)
Q Consensus 467 ddaeAL~nLG~~L~e~~GD~eEAee~feKA 496 (536)
-+...+..+-.+|.. .||--.|+..|++-
T Consensus 311 L~e~~nk~lm~~la~-~gD~is~~khyery 339 (361)
T COG3947 311 LSEQDNKGLMASLAT-LGDEISAIKHYERY 339 (361)
T ss_pred hhhHHHHHHHHHHHH-hccchhhhhHHHHH
Confidence 999888877777765 46777777777653
No 377
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=39.70 E-value=1.5e+02 Score=26.34 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFK 459 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~Fe 459 (536)
+.......+++..+..++.++..+..|..++. .-+..+..++++
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~--~~~~~~ll~~l~ 64 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYA--KYDPQKEIERLD 64 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHH--HHCHHHHHHHHH
Confidence 57788888888888888877777777776554 345556666666
No 378
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.68 E-value=2.1e+02 Score=29.00 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=70.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----HHHHhCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhcCCH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQF----LYIVAHDYDRAEEYFKRA-IAVEPPDAESFSKYASFLWRVRNDL 486 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~l----L~e~~GD~deAEe~FeKA-LeLDPddaeAL~nLG~~L~e~~GD~ 486 (536)
..|+-..|..+|..+-...| -|....+++++ +....|-|++-..-.+.. -.-+|--..+.-.||..-|+. ||+
T Consensus 106 ~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ka-gd~ 183 (221)
T COG4649 106 QKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA-GDF 183 (221)
T ss_pred hcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc-cch
Confidence 34889999999988777554 45555555542 222578888776665533 233455567777888877764 799
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385 487 WAAEETFLEAISADPTNSYYAANYANFLWN 516 (536)
Q Consensus 487 eEAee~feKALeLDPdNpeal~NyA~~L~e 516 (536)
..|..+|.+... |-..|....+.+.++.+
T Consensus 184 a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 184 AKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 999999999887 66666666666666544
No 379
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=38.39 E-value=54 Score=26.83 Aligned_cols=16 Identities=50% Similarity=0.775 Sum_probs=9.7
Q ss_pred hCCHHHHHHHHHHHHH
Q 009385 448 AHDYDRAEEYFKRAIA 463 (536)
Q Consensus 448 ~GD~deAEe~FeKALe 463 (536)
.|++++|..+|.+|++
T Consensus 21 ~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 21 AGDYEEALELYKKAIE 36 (77)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5666666666665554
No 380
>TIGR02664 nitr_red_assoc conserved hypothetical protein. Most members of this protein family are found in the Cyanobacteria, and these mostly near nitrate reductase genes and molybdopterin biosynthesis genes. We note that molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. This protein is sometimes annotated as nitrate reductase-associated protein. Its function is unknown.
Probab=37.68 E-value=23 Score=33.93 Aligned_cols=56 Identities=18% Similarity=0.326 Sum_probs=37.9
Q ss_pred hhhhhhhhcccCC-CCCCCCCCCCCCCCCCchhhhhhhhhhhcccccc-cchhHHHHHHHHhhhh
Q 009385 106 ENETNCRDNAVNS-ESESRDSRDGFVDPPWEEDEIIQESIERKANSVD-LPLSLRIIKRKLQWQD 168 (536)
Q Consensus 106 ~f~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~er~~~~v~-~p~slr~~krk~~~~e 168 (536)
.|-..++++.... +....++.++ ..|+|-....||..|..||..++ +-+++. ||.+
T Consensus 59 ~yr~~L~~l~~~~a~~~~~~l~~~-~~paW~~~~~iP~~v~~~a~~~~~~~~t~~------qW~~ 116 (145)
T TIGR02664 59 PYREYLRDLLRTHADTPPSDLPPD-EHAAWQSVSALPDAIVAQAGEVGLVALTAS------QWAT 116 (145)
T ss_pred HHHHHHHHHHHHHcCCCCcCCCCC-CCccccccccCCHHHHHHHHHhCCCCCCHH------HHhc
Confidence 3555566666322 2233445542 34679777789999999999998 777774 8887
No 381
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.96 E-value=1.6e+02 Score=35.58 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=67.6
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-----CCHH---HHHHHHHHHH--
Q 009385 411 DDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEP-----PDAE---SFSKYASFLW-- 480 (536)
Q Consensus 411 Dd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDP-----ddae---AL~nLG~~L~-- 480 (536)
.|.+..+.|+.||++|.+..|... .-.|||.++...-+.++..++.-+-++.++- .+.+ -|...|.++-
T Consensus 298 tDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~as 376 (1226)
T KOG4279|consen 298 TDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEAS 376 (1226)
T ss_pred cchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhh
Confidence 366788899999999999999643 4446787776434457777777666666542 2211 1222222110
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009385 481 RVRNDLWAAEETFLEAISADPTNSYYAANYANFLW 515 (536)
Q Consensus 481 e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~ 515 (536)
-..+||.+|+..-++..++.|-+......+.+++.
T Consensus 377 VLAnd~~kaiqAae~mfKLk~P~WYLkS~meni~l 411 (1226)
T KOG4279|consen 377 VLANDYQKAIQAAEMMFKLKPPVWYLKSTMENILL 411 (1226)
T ss_pred hhccCHHHHHHHHHHHhccCCceehHHHHHHHHHH
Confidence 11258999999999999999877655555666554
No 382
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=36.87 E-value=63 Score=30.72 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHHHHh
Q 009385 449 HDYDRAEEYFKRAIAV 464 (536)
Q Consensus 449 GD~deAEe~FeKALeL 464 (536)
|.|++|...+++|+++
T Consensus 23 g~~~eAa~s~r~AM~~ 38 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEV 38 (144)
T ss_dssp T-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4455555555555543
No 383
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=36.59 E-value=79 Score=26.78 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=7.3
Q ss_pred hCCHHHHHHHHHHHH
Q 009385 448 AHDYDRAEEYFKRAI 462 (536)
Q Consensus 448 ~GD~deAEe~FeKAL 462 (536)
.|++++|..+|.+||
T Consensus 19 ~g~y~eAl~~Y~~ai 33 (77)
T cd02683 19 EGRFQEALVCYQEGI 33 (77)
T ss_pred hccHHHHHHHHHHHH
Confidence 455555554444444
No 384
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=36.55 E-value=67 Score=27.47 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=10.9
Q ss_pred HhCCHHHHHHHHHHHHH
Q 009385 447 VAHDYDRAEEYFKRAIA 463 (536)
Q Consensus 447 ~~GD~deAEe~FeKALe 463 (536)
..|+|++|..+|..||+
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 35666666666666665
No 385
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=36.52 E-value=61 Score=24.91 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009385 438 ANYAQFLYIVAHDYDRAEEYFKRAIA 463 (536)
Q Consensus 438 ~NLA~lL~e~~GD~deAEe~FeKALe 463 (536)
++||..|. ..||.+.|.+.+++.+.
T Consensus 3 LdLA~ayi-e~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYI-EMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHH-HcCChHHHHHHHHHHHH
Confidence 56777777 57888888888888874
No 386
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=36.50 E-value=59 Score=28.02 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhC
Q 009385 451 YDRAEEYFKRAIAVE 465 (536)
Q Consensus 451 ~deAEe~FeKALeLD 465 (536)
|++|.++-.+||+.|
T Consensus 5 ~~~A~~~I~kaL~~d 19 (79)
T cd02679 5 YKQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHHhhhh
Confidence 444555555554443
No 387
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=35.14 E-value=69 Score=24.87 Aligned_cols=32 Identities=31% Similarity=0.291 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385 457 YFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA 489 (536)
Q Consensus 457 ~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA 489 (536)
.|.+||..+|++...+..||.-|-+ .|+...|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e-~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDE-HGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHH-cCCHHHH
Confidence 4555666666666666666665544 2455433
No 388
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=33.59 E-value=56 Score=27.64 Aligned_cols=16 Identities=25% Similarity=0.644 Sum_probs=10.5
Q ss_pred hCCHHHHHHHHHHHHH
Q 009385 448 AHDYDRAEEYFKRAIA 463 (536)
Q Consensus 448 ~GD~deAEe~FeKALe 463 (536)
.|+|++|..+|..+|+
T Consensus 19 ~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 19 EGDYEAAFEFYRAGVD 34 (75)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4667777766666665
No 389
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=33.25 E-value=1.3e+02 Score=34.74 Aligned_cols=24 Identities=17% Similarity=0.294 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Q 009385 437 LANYAQFLYIVAHDYDRAEEYFKRA 461 (536)
Q Consensus 437 L~NLA~lL~e~~GD~deAEe~FeKA 461 (536)
|.-+|..+| ..++|.+|..++-.|
T Consensus 321 Yty~gg~~y-R~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 321 YTYLGGYYY-RHKRYREALRSWAEA 344 (618)
T ss_dssp HHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred ceehhhHHH-HHHHHHHHHHHHHHH
Confidence 333444444 344454444444444
No 390
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=33.18 E-value=2.3e+02 Score=32.47 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=62.1
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385 448 AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 448 ~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c 523 (536)
..-.+.|.+.|-++-+..=.-.+++...|.+-+...||+.-|-..|+-.+..-|+++.+...|-.+|...++.+.+
T Consensus 410 ~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~na 485 (660)
T COG5107 410 KRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENA 485 (660)
T ss_pred HhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHH
Confidence 4457889999999877664555666666666666678999999999999999999999999999999999986543
No 391
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=32.84 E-value=78 Score=24.57 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHH
Q 009385 421 LLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAE 455 (536)
Q Consensus 421 e~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAE 455 (536)
..|.+||..+|++.....-||..|. ..|+-++|+
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~-e~gdp~rae 36 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLD-EHGDPARAE 36 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHH-HcCCHHHHh
Confidence 4678999999999999999999988 589887664
No 392
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=32.64 E-value=1e+02 Score=25.55 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=9.6
Q ss_pred HhCCHHHHHHHHHHHHH
Q 009385 447 VAHDYDRAEEYFKRAIA 463 (536)
Q Consensus 447 ~~GD~deAEe~FeKALe 463 (536)
..|++++|..+|.+|++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 18 NAGNYEEALRLYQHALE 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 45566666655555553
No 393
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=32.55 E-value=1.4e+02 Score=33.09 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=28.1
Q ss_pred CCHHHHHH--HHHHHHHh--CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 009385 414 ADYFRTEL--LYQTGLAQ--EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRA 461 (536)
Q Consensus 414 gdyeeAee--~YqKALeL--dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKA 461 (536)
.+|+-|++ -++.|+++ .-+++.-|..||.... .+|+++-|+++|+++
T Consensus 323 ~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL-~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 323 HRFELALQLGNLDIALEIAKELDDPEKWKQLGDEAL-RQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHH-HTTBHHHHHHHHHHC
T ss_pred HHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHH-HcCCHHHHHHHHHhh
Confidence 34444444 23344443 3446777777777655 577777777777776
No 394
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=32.50 E-value=77 Score=25.95 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=11.1
Q ss_pred HhCCHHHHHHHHHHHHH
Q 009385 447 VAHDYDRAEEYFKRAIA 463 (536)
Q Consensus 447 ~~GD~deAEe~FeKALe 463 (536)
..|++++|..+|..|++
T Consensus 18 ~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 18 EDGNYEEALELYKEALD 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 35677777777666654
No 395
>KOG2235 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.13 E-value=4.3e+02 Score=31.24 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHH
Q 009385 416 YFRTELLYQTGLAQEPNDPLL 436 (536)
Q Consensus 416 yeeAee~YqKALeLdPdn~eA 436 (536)
.-.-+++|++|+++-|++...
T Consensus 546 ly~nirlyEkalklF~ddtq~ 566 (776)
T KOG2235|consen 546 LYDNIRLYEKALKLFADDTQS 566 (776)
T ss_pred HHHHHHHHHHHHHhccCchHH
Confidence 334567888888888877443
No 396
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=31.84 E-value=2.3e+02 Score=31.13 Aligned_cols=79 Identities=23% Similarity=0.271 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHH--HHHHhCCCC--HH-HHHHHHHHHHHhcCCHHHHHHH
Q 009385 418 RTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFK--RAIAVEPPD--AE-SFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 418 eAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~Fe--KALeLDPdd--ae-AL~nLG~~L~e~~GD~eEAee~ 492 (536)
.-.+++++-....|+..+.++.||.+.| ..|+|..|-.|+- +++--+|+- .. .|..+|.-... .+++.|.+-
T Consensus 113 ~~l~~L~e~ynf~~e~i~~lykyakfqy-eCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~--qnWd~A~ed 189 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTPERIETLYKYAKFQY-ECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILT--QNWDGALED 189 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH--hhHHHHHHH
Confidence 4556666777778999999999999999 5999999988755 555444433 22 23344432221 378999988
Q ss_pred HHHHHHh
Q 009385 493 FLEAISA 499 (536)
Q Consensus 493 feKALeL 499 (536)
+.+..+.
T Consensus 190 L~rLre~ 196 (432)
T KOG2758|consen 190 LTRLREY 196 (432)
T ss_pred HHHHHHH
Confidence 8776663
No 397
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=31.68 E-value=4e+02 Score=30.49 Aligned_cols=105 Identities=12% Similarity=0.001 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHH--HHHHHH---------hC---CCCHHHHHHHHH--
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEY--FKRAIA---------VE---PPDAESFSKYAS-- 477 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~--FeKALe---------LD---PddaeAL~nLG~-- 477 (536)
+.-++|+.+++.+++-.|.|.+.-+-.- ++ ....|.+|... +-+.+. +. -.+.+.-+-|+.
T Consensus 394 ~~dekalnLLk~il~ft~yD~ec~n~v~--~f-vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFTNYDIECENIVF--LF-VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred CccHHHHHHHHHHHHhccccHHHHHHHH--HH-HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 5688999999999999999987665432 22 23445554432 222222 22 334555555544
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385 478 FLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC 523 (536)
Q Consensus 478 ~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c 523 (536)
+|+- .|+|.++.-|-.=..+++| +|.++.-+|.++.+..+++++
T Consensus 471 yLys-qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 471 YLYS-QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHh-cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHH
Confidence 4454 4799999999999999999 899999999999999988653
No 398
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=31.40 E-value=5.2e+02 Score=31.56 Aligned_cols=103 Identities=17% Similarity=0.056 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHhCCC--CH-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPN--DP-------LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA-----ESFSKYASFL 479 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPd--n~-------eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda-----eAL~nLG~~L 479 (536)
..+.+|..+..++-..-|. +. +...-.|.+.. ..++.++|+++.+.++..=|.+. -++..+|.+.
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val-~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~ 507 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVAL-NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAA 507 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Confidence 5777777777666555433 21 22222344444 57999999999999999988875 3566677655
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCH----H--HHHHHHHHHHHcC
Q 009385 480 WRVRNDLWAAEETFLEAISADPTNS----Y--YAANYANFLWNTG 518 (536)
Q Consensus 480 ~e~~GD~eEAee~feKALeLDPdNp----e--al~NyA~~L~elG 518 (536)
. .+|++++|..+..++.++.-.+- . +...-+.++...|
T Consensus 508 ~-~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 508 H-IRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred H-HhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 4 56899999999999998843221 1 2233455666666
No 399
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=31.11 E-value=86 Score=37.34 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=46.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWA 488 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eE 488 (536)
.||+|++|++.|..|=+.| ||.=++...||+-+-...++..=. +-+| -+|+.++|..+++.+ .+++
T Consensus 746 ~~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~-~We~ 814 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMM-EWEE 814 (1189)
T ss_pred hhcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHH-HHHH
Confidence 6799999999997553322 333344456666555444433211 2222 367888888888765 7888
Q ss_pred HHHHHHHH
Q 009385 489 AEETFLEA 496 (536)
Q Consensus 489 Aee~feKA 496 (536)
|.+||.+.
T Consensus 815 A~~yY~~~ 822 (1189)
T KOG2041|consen 815 AAKYYSYC 822 (1189)
T ss_pred HHHHHHhc
Confidence 98888765
No 400
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=30.69 E-value=1.9e+02 Score=25.26 Aligned_cols=50 Identities=4% Similarity=0.013 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHhCCHHHHHHHHHHHHHh
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQF---LYIVAHDYDRAEEYFKRAIAV 464 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~l---L~e~~GD~deAEe~FeKALeL 464 (536)
.+..+|+..+++||+..++.++-+..+|.+ ++ ..|+|.+++++..+=+++
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~-e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHM-EWGKYREMLAFALQQLEI 72 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 688999999999999999988877777754 34 468888877776655543
No 401
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=30.14 E-value=6e+02 Score=26.76 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHH----h-----------------CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009385 419 TELLYQTGLAQEPNDPLLLANYAQFLYIV----A-----------------HDYDRAEEYFKRAIAVEPPDAESFSKYA 476 (536)
Q Consensus 419 Aee~YqKALeLdPdn~eAL~NLA~lL~e~----~-----------------GD~deAEe~FeKALeLDPddaeAL~nLG 476 (536)
-.+.++.=++..|+...++..+|.++... + .-.++|..++.+|++++|..+.++..+=
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 44455555666787777777777654321 1 1356788888888888888887765543
No 402
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=29.76 E-value=2.1e+02 Score=26.11 Aligned_cols=44 Identities=25% Similarity=0.309 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009385 453 RAEEYFKRAIAV--EPPDAESFSKYASFLWRVRNDLWAAEETFLEAI 497 (536)
Q Consensus 453 eAEe~FeKALeL--DPddaeAL~nLG~~L~e~~GD~eEAee~feKAL 497 (536)
.+.+.|+..... --..+.-|..+|.++-. .|++++|.+.|+++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~-~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEK-RGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-cCCHHHHHHHHHhhC
Confidence 777777776664 46667888888887654 579999999999876
No 403
>PF06022 Cir_Bir_Yir: Plasmodium variant antigen protein Cir/Yir/Bir; InterPro: IPR006477 This group of sequences identifies a large paralogous family of variant antigens from several Plasmodium species (Plasmodium yoelii, Plasmodium berghei and Plasmodium chabaudi). It is not believed that there are any orthologs of this family in Plasmodium falciparum.
Probab=28.97 E-value=53 Score=34.37 Aligned_cols=29 Identities=28% Similarity=0.820 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHhhccC----------hhHHHHHHHHHhh
Q 009385 222 MHASFVWLFQQVFSHT----------PTLMVYVMILLAN 250 (536)
Q Consensus 222 m~asfvwlfq~vfs~t----------p~lmv~vmillan 250 (536)
+.|-|.|||.|.|..- +.+..|+||-|..
T Consensus 51 InA~~i~Ll~~~f~~~~~~~~~~~~n~~~~eYiilWLsy 89 (280)
T PF06022_consen 51 INAGFIWLLNQLFKNSDSFENSEKNNINIVEYIILWLSY 89 (280)
T ss_pred HHHHHHHHHHHHhccCcccccccccchhHHHHHHHHHHH
Confidence 3689999999999853 3589999999975
No 404
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=28.94 E-value=1.4e+02 Score=34.27 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=37.6
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009385 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFK 459 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~Fe 459 (536)
+.||...|.+-...+|...|.+|......+.+.. ..|+|+.|...+.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~-~lg~ye~~~~~~s 347 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFS-HLGYYEQAYQDIS 347 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHH-HhhhHHHHHHHhh
Confidence 4588999999999999999999988877777655 5788888776654
No 405
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=28.60 E-value=3.2e+02 Score=23.98 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=20.9
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009385 448 AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLW 480 (536)
Q Consensus 448 ~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~ 480 (536)
.+++-++++...++++.+|+||.++..|-..+.
T Consensus 20 a~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~ 52 (80)
T PRK15326 20 VDNLQTQVTEALDKLAAKPSDPALLAAYQSKLS 52 (80)
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 445556666666667777777777666655443
No 406
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.50 E-value=8.1e+02 Score=28.90 Aligned_cols=24 Identities=25% Similarity=0.130 Sum_probs=16.3
Q ss_pred cCCHHHHHHHHHHHHHhCCC-CHHH
Q 009385 483 RNDLWAAEETFLEAISADPT-NSYY 506 (536)
Q Consensus 483 ~GD~eEAee~feKALeLDPd-Npea 506 (536)
+|=+..|.++.+-.+.+||. ||.+
T Consensus 355 RGC~rTA~E~cKlllsLdp~eDPl~ 379 (665)
T KOG2422|consen 355 RGCWRTALEWCKLLLSLDPSEDPLG 379 (665)
T ss_pred cCChHHHHHHHHHHhhcCCcCCchh
Confidence 45567777777777777776 6643
No 407
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=27.98 E-value=2e+02 Score=34.91 Aligned_cols=88 Identities=20% Similarity=0.076 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 009385 435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP--D-------AESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSY 505 (536)
Q Consensus 435 eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd--d-------aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpe 505 (536)
.+-..+|..++ ..+++++|+.+..++...-|. + ++....-|.+. ..++++++|+++.+.|+..=|.+..
T Consensus 416 ~Lvll~aW~~~-s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~va-l~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 416 RLVLLQAWLLA-SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVA-LNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred hHHHHHHHHHH-HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhcccccc
Confidence 33334555455 579999999999988876555 2 12222223333 3467999999999999999888764
Q ss_pred H-----HHHHHHHHHHcCCCcccc
Q 009385 506 Y-----AANYANFLWNTGGEDTCF 524 (536)
Q Consensus 506 a-----l~NyA~~L~elGr~E~cl 524 (536)
. +.+.+.+..-.|+++.++
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al 517 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQAL 517 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHH
Confidence 3 566777777777766544
No 408
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=27.49 E-value=3e+02 Score=36.82 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 009385 416 YFRTELLYQTGLAQ---EP----NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWA 488 (536)
Q Consensus 416 yeeAee~YqKALeL---dP----dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eE 488 (536)
..+-+..+++++-. +| .-.+.|.++|++.. ..|.++.|..+..+|.+.. -++++...|..+|.. ||...
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR-~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~-gd~~~ 1720 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR-LAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQT-GDELN 1720 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH-hcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhh-ccHHH
Confidence 44445555555433 33 23688999999977 6899999999999999988 457778889999975 69999
Q ss_pred HHHHHHHHHHhC
Q 009385 489 AEETFLEAISAD 500 (536)
Q Consensus 489 Aee~feKALeLD 500 (536)
|+.++++.+.++
T Consensus 1721 Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1721 ALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHhh
Confidence 999999999654
No 409
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=27.36 E-value=6e+02 Score=29.04 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=50.4
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Q 009385 444 LYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAIS---ADPTNSYYAANYANFLWN 516 (536)
Q Consensus 444 L~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALe---LDPdNpeal~NyA~~L~e 516 (536)
+|...++.+-|+....+.|-++|-+..-|..-|.++... .+|.+|-.-+--|.= +.-.+.+....+-..||.
T Consensus 237 CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~L-eRy~eAarSamia~ymywl~g~~~q~~S~lIklyWq 311 (569)
T PF15015_consen 237 CYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRL-ERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQ 311 (569)
T ss_pred hhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHH
Confidence 455789999999999999999999998888888766554 478877766554433 344444444555555554
No 410
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.53 E-value=2.4e+02 Score=32.49 Aligned_cols=80 Identities=14% Similarity=-0.005 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCHHHHHHH
Q 009385 417 FRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE----SFSKYASFLWRVRNDLWAAEET 492 (536)
Q Consensus 417 eeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddae----AL~nLG~~L~e~~GD~eEAee~ 492 (536)
+..++...+..+..|+++..+.+.|.++. ..|+.+.|..++...+. +.--. -++.+|+++.... ++..|-.+
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~-~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~-~~~~aad~ 325 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILS-IKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQH-QYSRAADS 325 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHH-HcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhH
Confidence 77778888888999999999999999988 57889999999999987 32222 2345565555544 78999888
Q ss_pred HHHHHHhC
Q 009385 493 FLEAISAD 500 (536)
Q Consensus 493 feKALeLD 500 (536)
+......+
T Consensus 326 ~~~L~des 333 (546)
T KOG3783|consen 326 FDLLRDES 333 (546)
T ss_pred HHHHHhhh
Confidence 88887763
No 411
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=26.39 E-value=93 Score=34.48 Aligned_cols=65 Identities=25% Similarity=0.179 Sum_probs=48.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009385 422 LYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAI 497 (536)
Q Consensus 422 ~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKAL 497 (536)
+++.||..-. |+...+.||. ..|+++.|.+..+ .-+++.-|..||..... .|+++-|+++|+++-
T Consensus 310 ~~e~AL~~~~-D~~~rFeLAl----~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~-~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 310 YPELALQFVT-DPDHRFELAL----QLGNLDIALEIAK-----ELDDPEKWKQLGDEALR-QGNIELAEECYQKAK 374 (443)
T ss_dssp -HHHHHHHSS--HHHHHHHHH----HCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHH-TTBHHHHHHHHHHCT
T ss_pred CHHHHHhhcC-ChHHHhHHHH----hcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHH-cCCHHHHHHHHHhhc
Confidence 4456777655 5788888882 4799999987654 34578899999997776 479999999999863
No 412
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=26.37 E-value=2.9e+02 Score=23.74 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHH
Q 009385 453 RAEEYFKRAIAVEPPDAESFS 473 (536)
Q Consensus 453 eAEe~FeKALeLDPddaeAL~ 473 (536)
+|++.+.+++...|+++.-..
T Consensus 31 ~aIe~L~q~~~~~pD~~~k~~ 51 (75)
T cd02682 31 KAIEVLSQIVKNYPDSPTRLI 51 (75)
T ss_pred HHHHHHHHHHHhCCChHHHHH
Confidence 666666666777787776433
No 413
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.84 E-value=50 Score=39.44 Aligned_cols=106 Identities=22% Similarity=0.227 Sum_probs=70.4
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHH--HHhCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Q 009385 412 DYADYFRTELLYQTGLAQEPNDP------LLLANYAQFLY--IVAHDYDRAEEYFKRAIAVE-PPDAESFSKYASFLWRV 482 (536)
Q Consensus 412 d~gdyeeAee~YqKALeLdPdn~------eAL~NLA~lL~--e~~GD~deAEe~FeKALeLD-PddaeAL~nLG~~L~e~ 482 (536)
|-.||+.-+++.+ -|+.-|+.- ..-+.||.++. ...||-++|......+++.+ |-.++.+...|.+|-..
T Consensus 213 DvQdY~amirLVe-~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDm 291 (1226)
T KOG4279|consen 213 DVQDYDAMIRLVE-DLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDM 291 (1226)
T ss_pred cccchHHHHHHHH-HHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhh
Confidence 4467775555544 344455322 22233454443 23578999999999999987 44567777778766431
Q ss_pred --------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385 483 --------RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGG 519 (536)
Q Consensus 483 --------~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr 519 (536)
.+..+.|+.+|++|.+..|.- ..-.|||.+|...|+
T Consensus 292 F~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 292 FIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAGE 335 (1226)
T ss_pred hhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhhh
Confidence 124678999999999999964 234588998888885
No 414
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.82 E-value=2.8e+02 Score=32.70 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f 493 (536)
.+|-+...+.++||++-++ +.-.+.++ . ..|+++.|.....++ ++..=|..||.+... .+++..|.++|
T Consensus 621 a~Fle~~g~~e~AL~~s~D-~d~rFela---l-~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~-~~~l~lA~EC~ 689 (794)
T KOG0276|consen 621 AHFLESQGMKEQALELSTD-PDQRFELA---L-KLGRLDIAFDLAVEA-----NSEVKWRQLGDAALS-AGELPLASECF 689 (794)
T ss_pred HhHhhhccchHhhhhcCCC-hhhhhhhh---h-hcCcHHHHHHHHHhh-----cchHHHHHHHHHHhh-cccchhHHHHH
Confidence 4566667788899998774 45555555 2 468898887765444 567778889987665 57999999999
Q ss_pred HHHHHh--------CCCCHHHH------------HHHHH-HHHHcCCCccccCCCCCCCCccc
Q 009385 494 LEAISA--------DPTNSYYA------------ANYAN-FLWNTGGEDTCFPLSSPDSSTQE 535 (536)
Q Consensus 494 eKALeL--------DPdNpeal------------~NyA~-~L~elGr~E~clpl~~~~~~~~~ 535 (536)
.+|..+ .-+|.+.+ +|+|. +++..|+.++|+-|..+.+--.|
T Consensus 690 ~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~pe 752 (794)
T KOG0276|consen 690 LRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQRLPE 752 (794)
T ss_pred HhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcCcCcH
Confidence 998664 23444432 33332 46788899999887766654433
No 415
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=25.42 E-value=46 Score=28.37 Aligned_cols=18 Identities=17% Similarity=0.325 Sum_probs=10.8
Q ss_pred cccCCHHHHHHHHHHHHH
Q 009385 411 DDYADYFRTELLYQTGLA 428 (536)
Q Consensus 411 Dd~gdyeeAee~YqKALe 428 (536)
|..|+|++|+.+|+.||+
T Consensus 17 D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 17 DQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 444666666666666655
No 416
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=25.15 E-value=96 Score=26.23 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 009385 417 FRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP 467 (536)
Q Consensus 417 eeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd 467 (536)
.+|..++.+|++.|-. -+|..+ ..-|..|+.+|..+++.+++
T Consensus 4 ~~A~~l~~~Ave~d~~-----~~y~eA----~~~Y~~~i~~~~~~~k~e~~ 45 (75)
T cd02677 4 EQAAELIRLALEKEEE-----GDYEAA----FEFYRAGVDLLLKGVQGDSS 45 (75)
T ss_pred HHHHHHHHHHHHHHHH-----hhHHHH----HHHHHHHHHHHHHHhccCCC
Confidence 4556666666555432 112211 12244666666666666544
No 417
>PF12854 PPR_1: PPR repeat
Probab=24.49 E-value=1.5e+02 Score=20.89 Aligned_cols=26 Identities=19% Similarity=0.083 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 009385 434 PLLLANYAQFLYIVAHDYDRAEEYFKR 460 (536)
Q Consensus 434 ~eAL~NLA~lL~e~~GD~deAEe~FeK 460 (536)
...|..+-..+. ..|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~C-k~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYC-KAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHH-HCCCHHHHHHHHHh
Confidence 444544444555 46777777777764
No 418
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=24.49 E-value=1.3e+02 Score=24.61 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 009385 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP 467 (536)
Q Consensus 415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd 467 (536)
.+.+|..+..+|++.|-.. ++...+ .-|..|.++|.+++..+|+
T Consensus 4 ~~~~A~~li~~Av~~d~~g-----~~~eAl----~~Y~~a~e~l~~~~~~~~~ 47 (77)
T smart00745 4 YLSKAKELISKALKADEAG-----DYEEAL----ELYKKAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHHHHHHHHHHcC-----CHHHHH----HHHHHHHHHHHHHhccCCC
Confidence 4567777777777766521 111111 1244777778888877764
No 419
>PF13041 PPR_2: PPR repeat family
Probab=24.44 E-value=2.9e+02 Score=20.32 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=8.0
Q ss_pred hCCHHHHHHHHHHHHH
Q 009385 448 AHDYDRAEEYFKRAIA 463 (536)
Q Consensus 448 ~GD~deAEe~FeKALe 463 (536)
.|++++|.+.|++..+
T Consensus 16 ~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 16 AGKFEEALKLFKEMKK 31 (50)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 4555555555554444
No 420
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=24.06 E-value=3.5e+02 Score=31.34 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=67.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh---CC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA---HD------YDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR 483 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~---GD------~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~ 483 (536)
.|+.++|...+-..-.++|+-..+...|-++..... +| --+-..|.++.|-.|.+|+.++-.-+.-.++.
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 789 (831)
T PRK15180 711 EGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHL- 789 (831)
T ss_pred cccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHH-
Confidence 388999999988888899998888888877644211 11 11456778888999999998876655444454
Q ss_pred CCHHHHHHHHHHHHHhC-CCCHH
Q 009385 484 NDLWAAEETFLEAISAD-PTNSY 505 (536)
Q Consensus 484 GD~eEAee~feKALeLD-PdNpe 505 (536)
.||..|..|+++.-+.+ |..|.
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~ 812 (831)
T PRK15180 790 RDYTQALQYWQRLEKVNGPTEPV 812 (831)
T ss_pred HHHHHHHHHHHHHHhccCCCcch
Confidence 49999999999988865 55553
No 421
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=23.77 E-value=2e+02 Score=33.37 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=42.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHhcCCHH
Q 009385 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIA-----VEPPDAESFSKYASFLWRVRNDLW 487 (536)
Q Consensus 413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALe-----LDPddaeAL~nLG~~L~e~~GD~e 487 (536)
...|.-|+-.+-..-++.|.+. -..++..|++||. .+-.|...|..+|..+++. ++|.
T Consensus 273 l~~YPmALg~LadLeEi~pt~~----------------r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~-~~~~ 335 (618)
T PF05053_consen 273 LARYPMALGNLADLEEIDPTPG----------------RPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRH-KRYR 335 (618)
T ss_dssp TTT-HHHHHHHHHHHHHS--TT----------------S--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHT-T-HH
T ss_pred hhhCchhhhhhHhHHhhccCCC----------------CCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHH-HHHH
Confidence 3688888888888888887632 1123333333333 2455667788888888874 6999
Q ss_pred HHHHHHHHHHH
Q 009385 488 AAEETFLEAIS 498 (536)
Q Consensus 488 EAee~feKALe 498 (536)
+|+.++.+|-.
T Consensus 336 eA~~~Wa~aa~ 346 (618)
T PF05053_consen 336 EALRSWAEAAD 346 (618)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888755
No 422
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=23.34 E-value=2.5e+02 Score=32.61 Aligned_cols=80 Identities=20% Similarity=0.191 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009385 416 YFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLE 495 (536)
Q Consensus 416 yeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feK 495 (536)
.+.+....+.-+--.......++.-|.++. .-+..++|.++|++.+..+|+ ++++.++.-|++. |-.+.|...++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~- 98 (578)
T PRK15490 24 LAQAVALIDSELPTEALTSLAMLKKAEFLH-DVNETERAYALYETLIAQNND--EARYEYARRLYNT-GLAKDAQLILK- 98 (578)
T ss_pred HHHHHHHHHHhCCccchhHHHHHHHhhhhh-hhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhh-hhhhHHHHHHH-
Confidence 333333333333333333444455566665 478899999999999999999 6677888777764 67888888877
Q ss_pred HHHhCCC
Q 009385 496 AISADPT 502 (536)
Q Consensus 496 ALeLDPd 502 (536)
++.|.
T Consensus 99 --~~~~~ 103 (578)
T PRK15490 99 --KVSNG 103 (578)
T ss_pred --HhCcc
Confidence 44555
No 423
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.90 E-value=4.2e+02 Score=29.14 Aligned_cols=99 Identities=11% Similarity=0.043 Sum_probs=55.3
Q ss_pred cccccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 009385 389 DESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQ--EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEP 466 (536)
Q Consensus 389 d~~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeL--dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDP 466 (536)
...+|.+-++.+...-+-+| ++-.+..++|-+. .-.-.+++.+.|..++ ..||.+.|++.+++..+..-
T Consensus 65 ~i~~D~~~l~~m~~~neeki--------~eld~~iedaeenlGE~ev~ea~~~kaeYyc-qigDkena~~~~~~t~~ktv 135 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKANEEKI--------KELDEKIEDAEENLGESEVREAMLRKAEYYC-QIGDKENALEALRKTYEKTV 135 (393)
T ss_pred ceeccHHHHHHHHHhhHHHH--------HHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHh
Confidence 45677777776665543233 2222333344443 2223578888888777 58999999999888776431
Q ss_pred ------CCHHHHHHHHHHHHHhc---CCHHHHHHHHHHH
Q 009385 467 ------PDAESFSKYASFLWRVR---NDLWAAEETFLEA 496 (536)
Q Consensus 467 ------ddaeAL~nLG~~L~e~~---GD~eEAee~feKA 496 (536)
+=.-....+|.++.+.. ...++|..++++.
T Consensus 136 s~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 136 SLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred hcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 11233456665554321 2344555555443
No 424
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.78 E-value=1.5e+02 Score=32.77 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 009385 435 LLLANYAQFLYIVAHDYDRAEEYFKRAI 462 (536)
Q Consensus 435 eAL~NLA~lL~e~~GD~deAEe~FeKAL 462 (536)
..++.+|-.+. ..++|.+|.+.|...|
T Consensus 165 s~~YyvGFayl-MlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 165 STYYYVGFAYL-MLRRYADAIRTFSQIL 191 (404)
T ss_pred ehHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 33444443333 4566666666666655
No 425
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=22.66 E-value=1.5e+02 Score=32.16 Aligned_cols=47 Identities=17% Similarity=-0.005 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRA 461 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKA 461 (536)
|.+.+|+++-++++.++|=+...+..+-++|. ..||-=.|.+.|++-
T Consensus 293 g~~neAi~l~qr~ltldpL~e~~nk~lm~~la-~~gD~is~~khyery 339 (361)
T COG3947 293 GKPNEAIQLHQRALTLDPLSEQDNKGLMASLA-TLGDEISAIKHYERY 339 (361)
T ss_pred CChHHHHHHHHHHhhcChhhhHHHHHHHHHHH-HhccchhhhhHHHHH
Confidence 79999999999999999999999988887777 689877777777654
No 426
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=22.39 E-value=4.7e+02 Score=28.26 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHhcCCHHHHHHHHHHHHHh
Q 009385 439 NYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE--SFSKY--ASFLWRVRNDLWAAEETFLEAISA 499 (536)
Q Consensus 439 NLA~lL~e~~GD~deAEe~FeKALeLDPddae--AL~nL--G~~L~e~~GD~eEAee~feKALeL 499 (536)
..+.-++ ..++|..|...|...++.=|.+.. .+..+ |.-+|+. -++++|.+++++.+..
T Consensus 136 ~~a~~l~-n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~-fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELF-NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDR-FDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHH
Confidence 3444566 589999999999999985344333 33333 3445664 4899999999998875
No 427
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=22.27 E-value=1.2e+02 Score=37.83 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=75.9
Q ss_pred HHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------C-CCCHHHHHHHHHHHHHhcCCHHH
Q 009385 418 RTELLYQ-TGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV-------E-PPDAESFSKYASFLWRVRNDLWA 488 (536)
Q Consensus 418 eAee~Yq-KALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL-------D-PddaeAL~nLG~~L~e~~GD~eE 488 (536)
++..++. .--.+.|..+..|..++.+++ ..+|+++|..+-.+|.-+ | |+....+.+++.+.+.. ++...
T Consensus 956 ~slnl~~~v~~~~h~~~~~~~~~La~l~~-~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~-~~~~~ 1033 (1236)
T KOG1839|consen 956 ESLNLLNNVMGVLHPEVASKYRSLAKLSN-RLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAV-KNLSG 1033 (1236)
T ss_pred hhhhHHHHhhhhcchhHHHHHHHHHHHHh-hhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhc-cCccc
Confidence 3333665 444557888999999999888 689999999987777654 3 66678888888766554 47888
Q ss_pred HHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCCcccc
Q 009385 489 AEETFLEAISA-----DPTN---SYYAANYANFLWNTGGEDTCF 524 (536)
Q Consensus 489 Aee~feKALeL-----DPdN---peal~NyA~~L~elGr~E~cl 524 (536)
|...+.+|+.+ .|+. +....|++.++..+++++.++
T Consensus 1034 al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al 1077 (1236)
T KOG1839|consen 1034 ALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTAL 1077 (1236)
T ss_pred hhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHH
Confidence 88888888875 2333 344567888877777766543
No 428
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=22.22 E-value=62 Score=36.41 Aligned_cols=28 Identities=32% Similarity=0.712 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHhhccChh--HHHHHHHHHh
Q 009385 222 MHASFVWLFQQVFSHTPT--LMVYVMILLA 249 (536)
Q Consensus 222 m~asfvwlfq~vfs~tp~--lmv~vmilla 249 (536)
-|.-++||+|+||+.+-+ +.+|-|+|+-
T Consensus 264 ~~~PlLWL~qfif~~~~Rl~ili~W~lllv 293 (510)
T KOG2468|consen 264 RHLPLLWLVQFIFSSLTRLKILIYWSLLLV 293 (510)
T ss_pred ccCcHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 356899999999999876 4566666654
No 429
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=21.79 E-value=4.8e+02 Score=26.15 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 009385 435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAVE 465 (536)
Q Consensus 435 eAL~NLA~lL~e~~GD~deAEe~FeKALeLD 465 (536)
.+...+|..++ ..|++++|.++|+++....
T Consensus 179 ~l~~~~A~ey~-~~g~~~~A~~~l~~~~~~y 208 (247)
T PF11817_consen 179 YLSLEMAEEYF-RLGDYDKALKLLEPAASSY 208 (247)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHH
Confidence 34456787777 5899999999999996553
No 430
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=21.41 E-value=60 Score=27.74 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=16.0
Q ss_pred CccccCCHHHHHHHHHHHHHh
Q 009385 409 EADDYADYFRTELLYQTGLAQ 429 (536)
Q Consensus 409 epDd~gdyeeAee~YqKALeL 429 (536)
+.|..|+|++|+.+|..||+.
T Consensus 15 ~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 15 DEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhHhhhHHHHHHHHHHHHHH
Confidence 345668888888888888875
No 431
>TIGR01590 yir-bir-cir_Pla yir/bir/cir-family of variant antigens, Plasmodium-specific. The model only hits genes previously characterized as yir, bir, or cir genes above the trusted cutoff. In between trusted and noise is one gene from P. vivax (vir25) which has been characterized as a distant relative of the yir/bir/cir family. The vir family appears to be present in 600-1000 copies per haploid genome and is preferentially located in the sub-telomeric regions of the chromosomes. The genomic data for yoelii is consistent with this observation. It is not believed that there are any orthologs of this family in P. falciparum.
Probab=21.37 E-value=90 Score=31.14 Aligned_cols=29 Identities=24% Similarity=0.686 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHhhcc----------ChhHHHHHHHHHhh
Q 009385 222 MHASFVWLFQQVFSH----------TPTLMVYVMILLAN 250 (536)
Q Consensus 222 m~asfvwlfq~vfs~----------tp~lmv~vmillan 250 (536)
+.|.|.|||.|.|.. ...+..|+||-|..
T Consensus 35 InA~~l~Ll~~f~~~~~~~~~~~~~n~~~veYiilWLsy 73 (199)
T TIGR01590 35 INAGCLWLLNQLYGISKDFKYKNNNNKAFIEYIIIWLSY 73 (199)
T ss_pred HHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHH
Confidence 368999999999943 24577899999984
No 432
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=21.17 E-value=2.1e+02 Score=24.11 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=9.7
Q ss_pred HhCCHHHHHHHHHHHHH
Q 009385 447 VAHDYDRAEEYFKRAIA 463 (536)
Q Consensus 447 ~~GD~deAEe~FeKALe 463 (536)
..|++++|..+|..+|+
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 35566666666655554
No 433
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=20.89 E-value=5.2e+02 Score=31.42 Aligned_cols=85 Identities=14% Similarity=0.157 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------CC
Q 009385 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFL--YIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR------ND 485 (536)
Q Consensus 414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL--~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~------GD 485 (536)
+++++-...-+++-++.|.++.+|.++..-. ....++-..++..|++|| .|-+.+..|..++.+++... ++
T Consensus 127 ~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal-~dy~~v~iw~e~~~y~~~~~~~~~~~~d 205 (881)
T KOG0128|consen 127 GDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKAL-GDYNSVPIWEEVVNYLVGFGNVAKKSED 205 (881)
T ss_pred cchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHh-cccccchHHHHHHHHHHhcccccccccc
Confidence 7888888888888889999999998876522 212467889999999999 47777778877777665433 46
Q ss_pred HHHHHHHHHHHHHh
Q 009385 486 LWAAEETFLEAISA 499 (536)
Q Consensus 486 ~eEAee~feKALeL 499 (536)
++.-...|.+|++.
T Consensus 206 ~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 206 YKKERSVFERALRS 219 (881)
T ss_pred chhhhHHHHHHHhh
Confidence 78888889999875
No 434
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=20.73 E-value=1.7e+02 Score=23.90 Aligned_cols=43 Identities=21% Similarity=0.390 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 009385 416 YFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP 467 (536)
Q Consensus 416 yeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd 467 (536)
+.+|+.+..+|++.|-. -++...+ .-|..|.+.|.+++...|+
T Consensus 3 ~~~a~~l~~~Av~~D~~-----g~~~~Al----~~Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 3 LQQAKELIKQAVKEDED-----GNYEEAL----ELYKEALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHHHHHHHHHc-----CCHHHHH----HHHHHHHHHHHHHhccCCC
Confidence 34566666666555433 1111111 1244666677777766655
No 435
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.53 E-value=3.3e+02 Score=30.71 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=41.5
Q ss_pred HhCCHHHHHHHHHHHH--HhCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 009385 447 VAHDYDRAEEYFKRAI--AVEPPD--AESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSY 505 (536)
Q Consensus 447 ~~GD~deAEe~FeKAL--eLDPdd--aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpe 505 (536)
..+-|+.|.+.-.++. +.+-++ +..++.+|.+..-+ .+|..|.++|-+|++..|.+..
T Consensus 221 ~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiq-ldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 221 HNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQ-LDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred hhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhh-cchhHHHHHHHHHHHhCcchhh
Confidence 3467899988887776 222333 33455667776654 5999999999999999998653
No 436
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.33 E-value=1.7e+02 Score=32.81 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=39.2
Q ss_pred ccCCHHHHHHHHHHHH--HhCCCC--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 009385 412 DYADYFRTELLYQTGL--AQEPND--PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA 469 (536)
Q Consensus 412 d~gdyeeAee~YqKAL--eLdPdn--~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda 469 (536)
.++.|+.|..+-.+.. +.+.++ +..++-+|.+-. .+.||..|.++|.+|++..|++.
T Consensus 221 ~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIka-iqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 221 HNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKA-IQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred hhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHH-hhcchhHHHHHHHHHHHhCcchh
Confidence 3467777777776655 112222 233444566655 58899999999999999999854
No 437
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=20.23 E-value=2.4e+02 Score=23.34 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 009385 416 YFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP 467 (536)
Q Consensus 416 yeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd 467 (536)
..+|+.++.+|++.|-..- |...+. -|..|.++|.++++..|+
T Consensus 3 ~~~A~~l~~~Av~~D~~g~-----y~eA~~----~Y~~aie~l~~~~k~e~~ 45 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGN-----YEEALR----LYQHALEYFMHALKYEKN 45 (75)
T ss_pred HHHHHHHHHHHHHHHHcCC-----HHHHHH----HHHHHHHHHHHHHhhCCC
Confidence 3456666666666543211 111111 134677777777777664
No 438
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=20.23 E-value=2.7e+02 Score=19.00 Aligned_cols=25 Identities=24% Similarity=0.074 Sum_probs=12.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH
Q 009385 490 EETFLEAISADPTNSYYAANYANFL 514 (536)
Q Consensus 490 ee~feKALeLDPdNpeal~NyA~~L 514 (536)
+++..+++..+|.|..++...-.++
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHH
Confidence 3445555555565555544444433
No 439
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=20.14 E-value=7e+02 Score=29.21 Aligned_cols=50 Identities=8% Similarity=0.072 Sum_probs=38.2
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCCccccCCCCCCC
Q 009385 482 VRNDLWAAEETFLEAISADPTNSYYAANYANFLWN----TGGEDTCFPLSSPDS 531 (536)
Q Consensus 482 ~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~e----lGr~E~clpl~~~~~ 531 (536)
...++.+|+....-.+++|..|..+.-++-..|.. ..+.|+.+.++.-+|
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~ 270 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQ 270 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhh
Confidence 34589999999999999999999998888888876 223466666555444
No 440
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=20.05 E-value=2.8e+02 Score=24.33 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009385 484 NDLWAAEETFLEAISADPTNSYYAANYANFLW 515 (536)
Q Consensus 484 GD~eEAee~feKALeLDPdNpeal~NyA~~L~ 515 (536)
++.-+++.-..++++.+|+||..+..|-..+.
T Consensus 21 ~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~ 52 (80)
T PRK15326 21 DNLQTQVTEALDKLAAKPSDPALLAAYQSKLS 52 (80)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 35566666677788899999998777665543
Done!