Query 009387
Match_columns 536
No_of_seqs 266 out of 827
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 04:03:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3okp_A GDP-mannose-dependent a 72.0 14 0.00048 36.3 9.3 93 357-457 292-384 (394)
2 2jjm_A Glycosyl transferase, g 71.8 17 0.00057 36.2 9.9 89 356-448 296-384 (394)
3 3c48_A Predicted glycosyltrans 69.2 36 0.0012 34.1 11.8 87 357-448 338-424 (438)
4 2gek_A Phosphatidylinositol ma 67.2 17 0.00057 35.9 8.7 97 354-458 293-389 (406)
5 3oy2_A Glycosyltransferase B73 64.3 20 0.0007 35.7 8.7 96 357-462 286-400 (413)
6 2x6q_A Trehalose-synthase TRET 62.8 28 0.00097 34.8 9.5 85 357-447 328-412 (416)
7 2r60_A Glycosyl transferase, g 56.6 31 0.001 35.7 8.7 88 357-448 371-458 (499)
8 3qhp_A Type 1 capsular polysac 54.2 36 0.0012 29.1 7.5 75 357-437 87-162 (166)
9 2bfw_A GLGA glycogen synthase; 52.7 45 0.0015 29.4 8.1 69 358-431 129-198 (200)
10 2iw1_A Lipopolysaccharide core 47.5 22 0.00075 34.6 5.5 86 356-448 282-370 (374)
11 3s28_A Sucrose synthase 1; gly 36.6 72 0.0025 36.4 8.2 91 357-451 677-771 (816)
12 3fro_A GLGA glycogen synthase; 36.0 57 0.002 32.2 6.5 89 357-454 343-432 (439)
No 1
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=71.99 E-value=14 Score=36.29 Aligned_cols=93 Identities=9% Similarity=-0.012 Sum_probs=61.9
Q ss_pred cccchHHHHhcCCeeeeecCchhhhhhhhccCCceEEecCCCCCcccHHHHHHhchhcHHHHHHHHHHHHHHHHHHhhhH
Q 009387 357 WSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKAQEIGRAASNFIQEELKME 436 (536)
Q Consensus 357 ~S~RlkyLL~c~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~Aq~IA~~g~~fa~~~L~~~ 436 (536)
++..+---|+||-.|+..+.. -..+.+... .=+-+..++ .++|.+++..+.++++..++++++|++++++.++.+
T Consensus 292 ~~~~~~Ea~a~G~PvI~~~~~---~~~e~i~~~-~g~~~~~~d-~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 366 (394)
T 3okp_A 292 LGIVYLEAQACGVPVIAGTSG---GAPETVTPA-TGLVVEGSD-VDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWSWE 366 (394)
T ss_dssp SCHHHHHHHHTTCCEEECSST---TGGGGCCTT-TEEECCTTC-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTBHH
T ss_pred cCcHHHHHHHcCCCEEEeCCC---ChHHHHhcC-CceEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 444555568888877775532 233444444 333344322 388999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHhhccCCC
Q 009387 437 YVYDYMFHLLNEYAKLLKFKP 457 (536)
Q Consensus 437 ~v~~Y~~~LL~eYArL~~~kP 457 (536)
.+..-+..+ |.++.+-++
T Consensus 367 ~~~~~~~~~---~~~~~r~~~ 384 (394)
T 3okp_A 367 IMGERLTNI---LQSEPRKLA 384 (394)
T ss_dssp HHHHHHHHH---HHSCCC---
T ss_pred HHHHHHHHH---HHHhccCcc
Confidence 776655444 455555443
No 2
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=71.79 E-value=17 Score=36.19 Aligned_cols=89 Identities=9% Similarity=0.016 Sum_probs=60.9
Q ss_pred ccccchHHHHhcCCeeeeecCchhhhhhhhccCCceEEecCCCCCcccHHHHHHhchhcHHHHHHHHHHHHHHHHHHhhh
Q 009387 356 AWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKAQEIGRAASNFIQEELKM 435 (536)
Q Consensus 356 a~S~RlkyLL~c~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~Aq~IA~~g~~fa~~~L~~ 435 (536)
+++..+---|+||-.|+..+.. -..+.+.....=+-+..++ .++|.+++..+.++++..++++++|++++++..+.
T Consensus 296 ~~~~~~~EAma~G~PvI~~~~~---~~~e~v~~~~~g~~~~~~d-~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~ 371 (394)
T 2jjm_A 296 SFGLVLLEAMACGVPCIGTRVG---GIPEVIQHGDTGYLCEVGD-TTGVADQAIQLLKDEELHRNMGERARESVYEQFRS 371 (394)
T ss_dssp SCCHHHHHHHHTTCCEEEECCT---TSTTTCCBTTTEEEECTTC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CCchHHHHHHhcCCCEEEecCC---ChHHHhhcCCceEEeCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCH
Confidence 3455566678899877766532 2223344433333344322 37899999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHH
Q 009387 436 EYVYDYMFHLLNE 448 (536)
Q Consensus 436 ~~v~~Y~~~LL~e 448 (536)
+.+..-+..++.+
T Consensus 372 ~~~~~~~~~~~~~ 384 (394)
T 2jjm_A 372 EKIVSQYETIYYD 384 (394)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8777655555543
No 3
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=69.24 E-value=36 Score=34.14 Aligned_cols=87 Identities=7% Similarity=-0.057 Sum_probs=58.6
Q ss_pred cccchHHHHhcCCeeeeecCchhhhhhhhccCCceEEecCCCCCcccHHHHHHhchhcHHHHHHHHHHHHHHHHHHhhhH
Q 009387 357 WSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKAQEIGRAASNFIQEELKME 436 (536)
Q Consensus 357 ~S~RlkyLL~c~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~Aq~IA~~g~~fa~~~L~~~ 436 (536)
++..+---|+||-.|+..+.. -..+.+....+=+-+..++ .++|.++|..+.++++..++++++|++++++ .+.+
T Consensus 338 ~~~~~~Eama~G~PvI~~~~~---~~~e~i~~~~~g~~~~~~d-~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-~s~~ 412 (438)
T 3c48_A 338 FGLVAMEAQASGTPVIAARVG---GLPIAVAEGETGLLVDGHS-PHAWADALATLLDDDETRIRMGEDAVEHART-FSWA 412 (438)
T ss_dssp SCHHHHHHHHTTCCEEEESCT---THHHHSCBTTTEEEESSCC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HHHH
T ss_pred CchHHHHHHHcCCCEEecCCC---ChhHHhhCCCcEEECCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh-CCHH
Confidence 444556678889877776532 2233444544433344322 3789999999999999999999999999988 7777
Q ss_pred HHHHHHHHHHHH
Q 009387 437 YVYDYMFHLLNE 448 (536)
Q Consensus 437 ~v~~Y~~~LL~e 448 (536)
.+..-+..++.+
T Consensus 413 ~~~~~~~~~~~~ 424 (438)
T 3c48_A 413 ATAAQLSSLYND 424 (438)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666544444443
No 4
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=67.23 E-value=17 Score=35.95 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=65.9
Q ss_pred ccccccchHHHHhcCCeeeeecCchhhhhhhhccCCceEEecCCCCCcccHHHHHHhchhcHHHHHHHHHHHHHHHHHHh
Q 009387 354 GYAWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKAQEIGRAASNFIQEEL 433 (536)
Q Consensus 354 G~a~S~RlkyLL~c~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~Aq~IA~~g~~fa~~~L 433 (536)
+-+++..+---|+||-.|+..+. .-+.+.+....+=+-+..++ .+++.++|..+.++++..++++++|+++++ ..
T Consensus 293 ~e~~~~~~~Ea~a~G~PvI~~~~---~~~~e~i~~~~~g~~~~~~d-~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~-~~ 367 (406)
T 2gek_A 293 GESFGIVLVEAMAAGTAVVASDL---DAFRRVLADGDAGRLVPVDD-ADGMAAALIGILEDDQLRAGYVARASERVH-RY 367 (406)
T ss_dssp CCSSCHHHHHHHHHTCEEEECCC---HHHHHHHTTTTSSEECCTTC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHGG-GG
T ss_pred CCCCchHHHHHHHcCCCEEEecC---CcHHHHhcCCCceEEeCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-hC
Confidence 33455566677889998887764 23334444444433344322 378999999999999999999999999998 77
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCC
Q 009387 434 KMEYVYDYMFHLLNEYAKLLKFKPV 458 (536)
Q Consensus 434 ~~~~v~~Y~~~LL~eYArL~~~kP~ 458 (536)
+.+.+..-+..+ |.+++..++.
T Consensus 368 s~~~~~~~~~~~---~~~~~~~~~~ 389 (406)
T 2gek_A 368 DWSVVSAQIMRV---YETVSGAGIK 389 (406)
T ss_dssp BHHHHHHHHHHH---HHHHCCTTCC
T ss_pred CHHHHHHHHHHH---HHHHHhhccc
Confidence 777766644444 4556665543
No 5
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=64.35 E-value=20 Score=35.73 Aligned_cols=96 Identities=9% Similarity=0.059 Sum_probs=61.0
Q ss_pred cccchHHHHhcCCeeeeecCchhhhhhhhccCCce-------------------EEecCCCCCcccHHHHHHhchhcHHH
Q 009387 357 WSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRH-------------------YWPIRDKDKCKSIKFAVDWGNTHKQK 417 (536)
Q Consensus 357 ~S~RlkyLL~c~SvVLk~~s~y~e~f~~~L~P~~H-------------------YVPv~~d~~~sDL~~~v~w~~~h~~~ 417 (536)
++.-+---|+||-.|+..+.. -..+.+....+ .++.. | .++|.++| .+.++++.
T Consensus 286 ~~~~~lEAma~G~PvI~s~~~---g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~-d--~~~la~~i-~l~~~~~~ 358 (413)
T 3oy2_A 286 FGLCSAEGAVLGKPLIISAVG---GADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGII-D--VDDLVEAF-TFFKDEKN 358 (413)
T ss_dssp SCHHHHHHHTTTCCEEEECCH---HHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEEC-C--HHHHHHHH-HHTTSHHH
T ss_pred CCcHHHHHHHcCCCEEEcCCC---ChHHHHccCcccccccccccccccccCcceeeCCC-C--HHHHHHHH-HHhcCHHH
Confidence 444455668888877776532 23344444444 44433 2 37899999 88889999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 009387 418 AQEIGRAASNFIQEELKMEYVYDYMFHLLNEYAKLLKFKPVAPDG 462 (536)
Q Consensus 418 Aq~IA~~g~~fa~~~L~~~~v~~Y~~~LL~eYArL~~~kP~~~~~ 462 (536)
.++++++|++++++..+.+.+..- ++.-|.+++.-++.-.+|
T Consensus 359 ~~~~~~~a~~~~~~~fs~~~~~~~---~~~~~~~~~~~~~~~~~g 400 (413)
T 3oy2_A 359 RKEYGKRVQDFVKTKPTWDDISSD---IIDFFNSLLRVESRETPG 400 (413)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHH---HHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHH---HHHHHHHHHhhcCCCCCC
Confidence 999999999999888887776654 445556676665443333
No 6
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=62.79 E-value=28 Score=34.76 Aligned_cols=85 Identities=9% Similarity=0.026 Sum_probs=59.5
Q ss_pred cccchHHHHhcCCeeeeecCchhhhhhhhccCCceEEecCCCCCcccHHHHHHhchhcHHHHHHHHHHHHHHHHHHhhhH
Q 009387 357 WSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKAQEIGRAASNFIQEELKME 436 (536)
Q Consensus 357 ~S~RlkyLL~c~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~Aq~IA~~g~~fa~~~L~~~ 436 (536)
++..+---|+||-.|+..+.. -..+.+.....=+-+. |. ++|.++|..+.++++..++++++|++++++.++.+
T Consensus 328 ~~~~~lEAma~G~PvI~~~~~---g~~e~i~~~~~g~l~~-d~--~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~ 401 (416)
T 2x6q_A 328 FGLTVTEAMWKGKPVIGRAVG---GIKFQIVDGETGFLVR-DA--NEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFIIT 401 (416)
T ss_dssp SCHHHHHHHHTTCCEEEESCH---HHHHHCCBTTTEEEES-SH--HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBHH
T ss_pred CccHHHHHHHcCCCEEEccCC---CChhheecCCCeEEEC-CH--HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHH
Confidence 444566678899988876642 2333444443333333 43 78999999999999999999999999999888887
Q ss_pred HHHHHHHHHHH
Q 009387 437 YVYDYMFHLLN 447 (536)
Q Consensus 437 ~v~~Y~~~LL~ 447 (536)
.+..-+..++.
T Consensus 402 ~~~~~~~~~~~ 412 (416)
T 2x6q_A 402 KHMERYLDILN 412 (416)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77665554443
No 7
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=56.63 E-value=31 Score=35.66 Aligned_cols=88 Identities=7% Similarity=-0.032 Sum_probs=58.8
Q ss_pred cccchHHHHhcCCeeeeecCchhhhhhhhccCCceEEecCCCCCcccHHHHHHhchhcHHHHHHHHHHHHHHHHHHhhhH
Q 009387 357 WSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKAQEIGRAASNFIQEELKME 436 (536)
Q Consensus 357 ~S~RlkyLL~c~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~Aq~IA~~g~~fa~~~L~~~ 436 (536)
++..+---|+||-.|+..+.. -..+.+....+=+-+..++ .++|.++|..+.++++..++++++|++++++..+.+
T Consensus 371 ~~~~~lEAma~G~PvI~s~~~---g~~e~v~~~~~g~l~~~~d-~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~ 446 (499)
T 2r60_A 371 FGLAPVEAMASGLPAVVTRNG---GPAEILDGGKYGVLVDPED-PEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQ 446 (499)
T ss_dssp CCSHHHHHHHTTCCEEEESSB---HHHHHTGGGTSSEEECTTC-HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBHH
T ss_pred CCcHHHHHHHcCCCEEEecCC---CHHHHhcCCceEEEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 344455668899877776542 1223333333222222222 378999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHH
Q 009387 437 YVYDYMFHLLNE 448 (536)
Q Consensus 437 ~v~~Y~~~LL~e 448 (536)
.+..-+..++.+
T Consensus 447 ~~~~~~~~~y~~ 458 (499)
T 2r60_A 447 ETARGYLEVIQE 458 (499)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776655555444
No 8
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=54.24 E-value=36 Score=29.13 Aligned_cols=75 Identities=9% Similarity=0.112 Sum_probs=47.5
Q ss_pred cccchHHHHhcCC-eeeeecCchhhhhhhhccCCceEEecCCCCCcccHHHHHHhchhcHHHHHHHHHHHHHHHHHHhhh
Q 009387 357 WSVSEKYILACDS-MTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKAQEIGRAASNFIQEELKM 435 (536)
Q Consensus 357 ~S~RlkyLL~c~S-vVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~Aq~IA~~g~~fa~~~L~~ 435 (536)
++..+---|+||- .|+.... ..-..+.+.....+++... .+++.+++..+.++++..++++++|++++ +..+.
T Consensus 87 ~~~~~~Eama~G~vPvi~~~~--~~~~~~~~~~~~~~~~~~~---~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~s~ 160 (166)
T 3qhp_A 87 EAIACLEAISVGIVPVIANSP--LSATRQFALDERSLFEPNN---AKDLSAKIDWWLENKLERERMQNEYAKSA-LNYTL 160 (166)
T ss_dssp CCHHHHHHHHTTCCEEEECCT--TCGGGGGCSSGGGEECTTC---HHHHHHHHHHHHHCHHHHHHHHHHHHHHH-HHHC-
T ss_pred ccHHHHHHHhcCCCcEEeeCC--CCchhhhccCCceEEcCCC---HHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHCCh
Confidence 3344555688897 6666221 1112223344445555432 37899999999999999999999999998 55554
Q ss_pred HH
Q 009387 436 EY 437 (536)
Q Consensus 436 ~~ 437 (536)
+.
T Consensus 161 ~~ 162 (166)
T 3qhp_A 161 EN 162 (166)
T ss_dssp --
T ss_pred hh
Confidence 43
No 9
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=52.74 E-value=45 Score=29.39 Aligned_cols=69 Identities=3% Similarity=-0.090 Sum_probs=47.2
Q ss_pred ccchHHHHhcCCeeeeecCchhhhhhhhccCCceEEecCCCCCcccHHHHHHhchh-cHHHHHHHHHHHHHHHHH
Q 009387 358 SVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNT-HKQKAQEIGRAASNFIQE 431 (536)
Q Consensus 358 S~RlkyLL~c~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~-h~~~Aq~IA~~g~~fa~~ 431 (536)
+..+---|+||-.|+..+.. .+.+.+ ...+-+-+..++ .+++.++|..+.+ +++..++++++|++++++
T Consensus 129 ~~~~~Ea~a~G~PvI~~~~~---~~~e~~-~~~~g~~~~~~~-~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~ 198 (200)
T 2bfw_A 129 GLVALEAMCLGAIPIASAVG---GLRDII-TNETGILVKAGD-PGELANAILKALELSRSDLSKFRENCKKRAMS 198 (200)
T ss_dssp CHHHHHHHHTTCEEEEESCH---HHHHHC-CTTTCEEECTTC-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCCEEEeCCC---ChHHHc-CCCceEEecCCC-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 44455567888887776543 222333 333333343322 3789999999999 999999999999999876
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=47.47 E-value=22 Score=34.64 Aligned_cols=86 Identities=6% Similarity=-0.036 Sum_probs=56.1
Q ss_pred ccccchHHHHhcCCeeeeecC-chhhhhhhhccCCceEEecC--CCCCcccHHHHHHhchhcHHHHHHHHHHHHHHHHHH
Q 009387 356 AWSVSEKYILACDSMTLLVKP-YFHDFFIRYLQPLRHYWPIR--DKDKCKSIKFAVDWGNTHKQKAQEIGRAASNFIQEE 432 (536)
Q Consensus 356 a~S~RlkyLL~c~SvVLk~~s-~y~e~f~~~L~P~~HYVPv~--~d~~~sDL~~~v~w~~~h~~~Aq~IA~~g~~fa~~~ 432 (536)
+++..+--.|+||-.|+..+. ...|...+ ...=+-+. .| .+++.+++..+.++++..++++++|+++++++
T Consensus 282 ~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~----~~~g~~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 355 (374)
T 2iw1_A 282 AAGIVLLEAITAGLPVLTTAVCGYAHYIAD----ANCGTVIAEPFS--QEQLNEVLRKALTQSPLRMAWAENARHYADTQ 355 (374)
T ss_dssp SSCHHHHHHHHHTCCEEEETTSTTTHHHHH----HTCEEEECSSCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHCCCCEEEecCCCchhhhcc----CCceEEeCCCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHh
Confidence 344556666888887777653 23333322 22212222 23 37899999999999999999999999999876
Q ss_pred hhhHHHHHHHHHHHHH
Q 009387 433 LKMEYVYDYMFHLLNE 448 (536)
Q Consensus 433 L~~~~v~~Y~~~LL~e 448 (536)
+...+..-+.+++.+
T Consensus 356 -~~~~~~~~~~~~l~~ 370 (374)
T 2iw1_A 356 -DLYSLPEKAADIITG 370 (374)
T ss_dssp -CCSCHHHHHHHHHHC
T ss_pred -hHHHHHHHHHHHHHH
Confidence 555555555555544
No 11
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=36.59 E-value=72 Score=36.37 Aligned_cols=91 Identities=10% Similarity=-0.003 Sum_probs=60.1
Q ss_pred cccchHHHHhcCCeeeeecCchhhhhhhhccCCceEEecCCCCCcccHHHHHHhch----hcHHHHHHHHHHHHHHHHHH
Q 009387 357 WSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGN----THKQKAQEIGRAASNFIQEE 432 (536)
Q Consensus 357 ~S~RlkyLL~c~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~----~h~~~Aq~IA~~g~~fa~~~ 432 (536)
++.-+---|+||-.|+..... -..+.+....+=+-++.++ .+++.++|..+. ++++..++++++|.+++++.
T Consensus 677 fglvllEAMA~G~PVIasd~G---G~~EiV~dg~~Gllv~p~D-~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~ 752 (816)
T 3s28_A 677 FGLTVVEAMTCGLPTFATCKG---GPAEIIVHGKSGFHIDPYH-GDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEK 752 (816)
T ss_dssp SCHHHHHHHHTTCCEEEESSB---THHHHCCBTTTBEEECTTS-HHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHcCCCEEEeCCC---ChHHHHccCCcEEEeCCCC-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 344455568889877776532 1223344444433344322 377888885543 89999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 009387 433 LKMEYVYDYMFHLLNEYAK 451 (536)
Q Consensus 433 L~~~~v~~Y~~~LL~eYAr 451 (536)
.+.+.+..-+..+...|..
T Consensus 753 fSwe~~a~~ll~lY~~~g~ 771 (816)
T 3s28_A 753 YTWQIYSQRLLTLTGVYGF 771 (816)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhH
Confidence 8888777766666665543
No 12
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=35.95 E-value=57 Score=32.25 Aligned_cols=89 Identities=4% Similarity=0.002 Sum_probs=57.4
Q ss_pred cccchHHHHhcCCeeeeecCchhhhhhhhccCCceEEecCCCCCcccHHHHHHhchh-cHHHHHHHHHHHHHHHHHHhhh
Q 009387 357 WSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNT-HKQKAQEIGRAASNFIQEELKM 435 (536)
Q Consensus 357 ~S~RlkyLL~c~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~-h~~~Aq~IA~~g~~fa~~~L~~ 435 (536)
++..+---|+||-.|+..+.. -..+.+....-+ -+..++ .+++.++|..+.+ +++..++++++|.+++ +..+.
T Consensus 343 ~~~~~~EAma~G~Pvi~s~~~---~~~e~~~~~~g~-~~~~~d-~~~la~~i~~ll~~~~~~~~~~~~~~~~~~-~~~s~ 416 (439)
T 3fro_A 343 FGLVALEAMCLGAIPIASAVG---GLRDIITNETGI-LVKAGD-PGELANAILKALELSRSDLSKFRENCKKRA-MSFSW 416 (439)
T ss_dssp SCHHHHHHHHTTCEEEEESST---HHHHHCCTTTCE-EECTTC-HHHHHHHHHHHHHHTTTTTHHHHHHHHHHH-HTSCH
T ss_pred ccHHHHHHHHCCCCeEEcCCC---CcceeEEcCceE-EeCCCC-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-hhCcH
Confidence 334455568899887776543 223334344222 233322 3789999998877 8999999999999999 55777
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 009387 436 EYVYDYMFHLLNEYAKLLK 454 (536)
Q Consensus 436 ~~v~~Y~~~LL~eYArL~~ 454 (536)
+.+.. +++.-|.++++
T Consensus 417 ~~~~~---~~~~~~~~~~~ 432 (439)
T 3fro_A 417 EKSAE---RYVKAYTGSID 432 (439)
T ss_dssp HHHHH---HHHHHHHTCSC
T ss_pred HHHHH---HHHHHHHHHHH
Confidence 66554 44444555543
Done!