Query 009387
Match_columns 536
No_of_seqs 266 out of 827
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 04:04:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009387.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009387hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iw1a1 c.87.1.8 (A:2-371) Lip 34.7 30 0.0022 30.5 6.5 71 357-432 282-354 (370)
2 d2bisa1 c.87.1.8 (A:1-437) Gly 32.5 37 0.0027 31.2 6.9 89 357-454 341-430 (437)
3 d2bfwa1 c.87.1.8 (A:218-413) G 29.3 64 0.0047 26.6 7.4 71 356-431 123-194 (196)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 20.9 46 0.0033 20.1 3.1 20 45-65 5-24 (30)
5 d1veha_ d.52.8.1 (A:) HIRA-int 19.8 55 0.004 25.2 4.4 49 169-220 39-89 (92)
6 d2dt7b1 a.217.1.1 (B:134-217) 17.1 46 0.0034 25.1 3.3 35 417-451 37-84 (84)
7 d2nxoa1 c.94.1.1 (A:5-281) Hyp 10.8 48 0.0035 29.2 2.0 23 402-424 203-225 (277)
8 d1s16a1 d.14.1.3 (A:1217-1383) 10.5 1.1E+02 0.0079 25.8 4.2 25 409-433 140-164 (167)
9 d2f9fa1 c.87.1.8 (A:2-167) Fir 10.2 1.3E+02 0.0092 24.0 4.4 66 356-427 98-165 (166)
10 d1kija1 d.14.1.3 (A:221-392) D 9.8 1.3E+02 0.0094 25.4 4.4 25 409-433 139-163 (172)
No 1
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=34.70 E-value=30 Score=30.53 Aligned_cols=71 Identities=4% Similarity=-0.036 Sum_probs=47.9
Q ss_pred cccchHHHHhcCCeeeeecCc-hhhhhhhhccCCce-EEecCCCCCcccHHHHHHhchhcHHHHHHHHHHHHHHHHHH
Q 009387 357 WSVSEKYILACDSMTLLVKPY-FHDFFIRYLQPLRH-YWPIRDKDKCKSIKFAVDWGNTHKQKAQEIGRAASNFIQEE 432 (536)
Q Consensus 357 ~S~RlkyLL~c~SvVLk~~s~-y~e~f~~~L~P~~H-YVPv~~d~~~sDL~~~v~w~~~h~~~Aq~IA~~g~~fa~~~ 432 (536)
++..+---|+||-.|+..+.. ..|. +....+ ++-++..+ .++|.++|..+.++++..++++++|+++++++
T Consensus 282 ~~~~~~EAma~G~PvI~s~~~g~~e~----i~~~~~G~l~~~~~d-~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~~ 354 (370)
T d2iw1a1 282 AGIVLLEAITAGLPVLTTAVCGYAHY----IADANCGTVIAEPFS-QEQLNEVLRKALTQSPLRMAWAENARHYADTQ 354 (370)
T ss_dssp SCHHHHHHHHHTCCEEEETTSTTTHH----HHHHTCEEEECSSCC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS
T ss_pred ccceeeecccCCeeEEEeCCCChHHH----hcCCCceEEEcCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 445566668889877765432 3332 333344 23233222 37899999999999999999999999999765
No 2
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=32.53 E-value=37 Score=31.20 Aligned_cols=89 Identities=4% Similarity=0.007 Sum_probs=55.6
Q ss_pred cccchHHHHhcCCeeeeecCchhhhhhhhccCCceEEecCCCCCcccHHHHHHhch-hcHHHHHHHHHHHHHHHHHHhhh
Q 009387 357 WSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGN-THKQKAQEIGRAASNFIQEELKM 435 (536)
Q Consensus 357 ~S~RlkyLL~c~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~-~h~~~Aq~IA~~g~~fa~~~L~~ 435 (536)
++..+---|+||-.|+..+..- ..+.+.....|+ ++..+ .++|.++|..+. .+++..++++++|.+.+++ ++.
T Consensus 341 ~~~~~~Eama~G~Pvi~~~~g~---~~e~i~~~~G~~-~~~~d-~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~-~s~ 414 (437)
T d2bisa1 341 FGLVALEAMCLGAIPIASAVGG---LRDIITNETGIL-VKAGD-PGELANAILKALELSRSDLSKFRENCKKRAMS-FSW 414 (437)
T ss_dssp SCHHHHHHHTTTCEEEEESCTT---HHHHCCTTTCEE-ECTTC-HHHHHHHHHHHHTTTTSCTHHHHHHHHHHHHH-SCH
T ss_pred cchHHHHHHHCCCCEEEeCCCC---cHHhEECCcEEE-ECCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-CCH
Confidence 3344555588999888765432 122233233443 33222 378999997755 4778899999999999865 687
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 009387 436 EYVYDYMFHLLNEYAKLLK 454 (536)
Q Consensus 436 ~~v~~Y~~~LL~eYArL~~ 454 (536)
+.+.. +++.-|.++++
T Consensus 415 ~~~a~---~~~~iY~~~i~ 430 (437)
T d2bisa1 415 EKSAE---RYVKAYTGSID 430 (437)
T ss_dssp HHHHH---HHHHHHHTCSC
T ss_pred HHHHH---HHHHHHHHHHH
Confidence 76654 55555766653
No 3
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=29.34 E-value=64 Score=26.63 Aligned_cols=71 Identities=3% Similarity=-0.049 Sum_probs=47.0
Q ss_pred ccccchHHHHhcCCeeeeecCchhhhhhhhccCCceEEecCCCCCcccHHHHHHhchh-cHHHHHHHHHHHHHHHHH
Q 009387 356 AWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNT-HKQKAQEIGRAASNFIQE 431 (536)
Q Consensus 356 a~S~RlkyLL~c~SvVLk~~s~y~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~-h~~~Aq~IA~~g~~fa~~ 431 (536)
+++..+---|+||-.|+...... ..+.+.....|+ +..++ .+++.++|..+.+ ..+..++|+++|++.+.+
T Consensus 123 ~~~~~~~Eam~~G~pvI~~~~~~---~~e~i~~~~g~~-~~~~~-~~~l~~~i~~~l~~~~~~~~~~~~~a~~~a~~ 194 (196)
T d2bfwa1 123 PFGLVALEAMCLGAIPIASAVGG---LRDIITNETGIL-VKAGD-PGELANAILKALELSRSDLSKFRENCKKRAMS 194 (196)
T ss_dssp SSCHHHHHHHHTTCEEEEESCHH---HHHHCCTTTCEE-ECTTC-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhcCceeeecCCCc---cceeecCCceee-ECCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 35566777899999888876432 223233333343 44332 3788888876554 677889999999998865
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=20.94 E-value=46 Score=20.08 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 009387 45 TLLLFLPLLIATAFISSLWNS 65 (536)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~ 65 (536)
+.+|+| ..++|+|+++..+.
T Consensus 5 ~yv~if-ac~i~lfffaiffr 24 (30)
T d2axtt1 5 TYVFIF-ACIIALFFFAIFFR 24 (30)
T ss_dssp HHHHHH-HHHHHHHHHHHHTS
T ss_pred ehHHHH-HHHHHHHHHHHHhc
Confidence 334444 67788888887753
No 5
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.78 E-value=55 Score=25.20 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=34.8
Q ss_pred EEEEECCEEEEEcccccccch-hHHHH-HHHHHHHHhcCCCCCCeEEEeeCCCc
Q 009387 169 RLILVNNKVYIHKYKQSIQTR-DVFTI-WGILQLLRKYPGRLPDLELMFDCDDR 220 (536)
Q Consensus 169 rv~I~nGrlyv~~~~~~~~tR-~~ftl-~~il~llr~~~~~LPDvEf~fn~~D~ 220 (536)
-+-|.||.|||.-.+.+..=- ...|+ .+|.++|+. .+|++.=+.++.|.
T Consensus 39 lv~v~~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~---~vpev~~V~~v~~~ 89 (92)
T d1veha_ 39 YRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF---YIPEVEGVEQVSGP 89 (92)
T ss_dssp EEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHH---HCSSCCCEEECSCS
T ss_pred EEEeeCCeEEEEEccCCCCChhHHHHHHHHHHHHHHH---HCCCcceEEEcCCC
Confidence 357889999999887654311 12333 678888887 57998888888774
No 6
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.07 E-value=46 Score=25.11 Aligned_cols=35 Identities=26% Similarity=0.549 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHH------------Hhhh-HHHHHHHHHHHHHHHh
Q 009387 417 KAQEIGRAASNFIQE------------ELKM-EYVYDYMFHLLNEYAK 451 (536)
Q Consensus 417 ~Aq~IA~~g~~fa~~------------~L~~-~~v~~Y~~~LL~eYAr 451 (536)
.|+-+|++|.+|-.. +|++ ....-|+.++|.+|++
T Consensus 37 tA~fVa~~G~~fe~~l~~~~~~Np~F~FL~~~~~~~~yY~~lv~~Y~~ 84 (84)
T d2dt7b1 37 TAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTK 84 (84)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCHHHHHHHHHcccCCCceeccCCCCcCcHHHHHHHHHHhC
Confidence 366777777766533 3332 3468899999999974
No 7
>d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]}
Probab=10.83 E-value=48 Score=29.20 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=17.9
Q ss_pred ccHHHHHHhchhcHHHHHHHHHH
Q 009387 402 KSIKFAVDWGNTHKQKAQEIGRA 424 (536)
Q Consensus 402 sDL~~~v~w~~~h~~~Aq~IA~~ 424 (536)
+-+.++.+|+++||++|.+|+.+
T Consensus 203 ~a~~~a~~~~~~~p~ea~~~~a~ 225 (277)
T d2nxoa1 203 EAFLASRNLSLEEVEKVAEQAAR 225 (277)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHH
Confidence 34667788999999998887654
No 8
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=10.54 E-value=1.1e+02 Score=25.82 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=20.8
Q ss_pred HhchhcHHHHHHHHHHHHHHHHHHh
Q 009387 409 DWGNTHKQKAQEIGRAASNFIQEEL 433 (536)
Q Consensus 409 ~w~~~h~~~Aq~IA~~g~~fa~~~L 433 (536)
.|+++||+.|+.|.+.+..-++..+
T Consensus 140 ~~l~~np~~a~~i~~k~i~~~~~R~ 164 (167)
T d1s16a1 140 LWLNQNVQAAELLAEMAISSAQRRM 164 (167)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999998887765544
No 9
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.19 E-value=1.3e+02 Score=23.98 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=39.5
Q ss_pred ccccchHHHHhcCCeeeeecCchhhhhhhhccCCce-EEecCCCCCcccHHHHHHhchhcHHHH-HHHHHHHHH
Q 009387 356 AWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRH-YWPIRDKDKCKSIKFAVDWGNTHKQKA-QEIGRAASN 427 (536)
Q Consensus 356 a~S~RlkyLL~c~SvVLk~~s~y~e~f~~~L~P~~H-YVPv~~d~~~sDL~~~v~w~~~h~~~A-q~IA~~g~~ 427 (536)
+++..+---|+||-.|+..+... +.+.+..... |+ +..| .+++.+++..+.+|+++. +.+.++|++
T Consensus 98 ~~~~~~~Ea~~~g~pvi~s~~~~---~~e~i~~~~~g~~-~~~d--~~~~~~~i~~l~~~~~~~~~~~~~~a~~ 165 (166)
T d2f9fa1 98 DFGLTPIEAMASGKPVIAVNEGG---FKETVINEKTGYL-VNAD--VNEIIDAMKKVSKNPDKFKKDCFRRAKE 165 (166)
T ss_dssp CSCHHHHHHHHTTCCEEEESSHH---HHHHCCBTTTEEE-ECSC--HHHHHHHHHHHHHCTTTTHHHHHHHHHT
T ss_pred cccccccccccccccceeecCCc---ceeeecCCccccc-CCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHhC
Confidence 34455566788898888776542 2233444443 32 3334 378999999988887643 344455544
No 10
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Probab=9.85 E-value=1.3e+02 Score=25.37 Aligned_cols=25 Identities=12% Similarity=-0.023 Sum_probs=21.0
Q ss_pred HhchhcHHHHHHHHHHHHHHHHHHh
Q 009387 409 DWGNTHKQKAQEIGRAASNFIQEEL 433 (536)
Q Consensus 409 ~w~~~h~~~Aq~IA~~g~~fa~~~L 433 (536)
.|++.||+.|+.|.+.+..-++..+
T Consensus 139 ~~L~~np~~a~~I~~k~~~~~~aR~ 163 (172)
T d1kija1 139 EILEENPRIAKAVYEKALRAAQARE 163 (172)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999998887766554
Done!