BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009388
(536 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 105/162 (64%), Gaps = 8/162 (4%)
Query: 4 ISMESLPLGFRFRPTDEELINHYLRLKINGRDSEVEVIPEIDVCKLEPWDLPGLSVIKTE 63
++ SLP GFRF PTDEEL+ YL K G D +++I EID+ K +PW LP ++
Sbjct: 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG-- 69
Query: 64 DPEWFFFCPRDRKYPNGLRSNRATEAGYWKATGKDRTIRSRKAGTNACIGMKKTLVFYRG 123
+ EW+FF PRDRKYPNG R NR +GYWKATG D+ I + +G+KK LVFY G
Sbjct: 70 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE----GQRVGIKKALVFYIG 125
Query: 124 RAPKGERTNWIMHEYRPTREDLLDSSTKPSQAAFVLCRLFRK 165
+APKG +TNWIMHEYR + STK +VLCR+++K
Sbjct: 126 KAPKGTKTNWIMHEYRLIEPSRRNGSTKLDD--WVLCRIYKK 165
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 105/162 (64%), Gaps = 8/162 (4%)
Query: 4 ISMESLPLGFRFRPTDEELINHYLRLKINGRDSEVEVIPEIDVCKLEPWDLPGLSVIKTE 63
++ SLP GFRF PTDEEL+ YL K G D +++I EID+ K +PW LP ++
Sbjct: 15 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG-- 72
Query: 64 DPEWFFFCPRDRKYPNGLRSNRATEAGYWKATGKDRTIRSRKAGTNACIGMKKTLVFYRG 123
+ EW+FF PRDRKYPNG R NR +GYWKATG D+ I + +G+KK LVFY G
Sbjct: 73 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE----GQRVGIKKALVFYIG 128
Query: 124 RAPKGERTNWIMHEYRPTREDLLDSSTKPSQAAFVLCRLFRK 165
+APKG +TNWIMHEYR + STK +VLCR+++K
Sbjct: 129 KAPKGTKTNWIMHEYRLIEPSRRNGSTKLDD--WVLCRIYKK 168
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 159 bits (402), Expect = 4e-39, Method: Composition-based stats.
Identities = 79/164 (48%), Positives = 101/164 (61%), Gaps = 9/164 (5%)
Query: 8 SLPLGFRFRPTDEELINHYLRLKINGRDSEVEVIPEIDVCKLEPWDLPGLSVIKTEDPEW 67
+LP GFRF PTD+EL+ HYL K G+ V +I E+D+ K +PWDLP ++ EW
Sbjct: 14 NLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAR--EW 71
Query: 68 FFFCPRDRKYPNGLRSNRATEAGYWKATGKDRTIRSRKAGTNACIGMKKTLVFYRGRAPK 127
+FF PRDRKYPNG R NRA GYWKATG D+ + R +G+KK LVFY G+AP+
Sbjct: 72 YFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPR----GRTLGIKKALVFYAGKAPR 127
Query: 128 GERTNWIMHEYRPTREDLLDSSTKPSQAA---FVLCRLFRKPEE 168
G +T+WIMHEYR + K +VLCRL+ K E
Sbjct: 128 GVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNE 171
>pdb|1H4C|A Chain A, Biochemical And Structural Analysis Of The Molybdenum
Cofactor Biosynthesis Protein Moba
Length = 201
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 53 DLPG-----LSVIKTEDPEWFFFCPRDRKY 77
D PG LSV++ E EWF FCP D Y
Sbjct: 75 DYPGPLAGMLSVMQQEAGEWFLFCPCDTPY 104
>pdb|1FR9|A Chain A, Structure Of E. Coli Moba
pdb|1FRW|A Chain A, Structure Of E. Coli Moba With Bound Gtp And Manganese
Length = 194
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 53 DLPG-----LSVIKTEDPEWFFFCPRDRKY 77
D PG LSV++ E EWF FCP D Y
Sbjct: 75 DYPGPLAGMLSVMQQEAGEWFLFCPCDTPY 104
>pdb|1E5K|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein Moba (Protein Fa) From Escherichia Coli At Near
Atomic Resolution
Length = 201
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 53 DLPG-----LSVIKTEDPEWFFFCPRDRKY 77
D PG LSV++ E EWF FCP D Y
Sbjct: 75 DYPGPLAGMLSVMQQEAGEWFLFCPCDTPY 104
>pdb|1HJL|A Chain A, Biochemical And Structural Analysis Of The Molybdenum
Cofactor Biosynthesis Protein Moba
Length = 201
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 53 DLPG-----LSVIKTEDPEWFFFCPRDRKY 77
D PG LSV++ E EWF FCP D Y
Sbjct: 75 DYPGPLAGMLSVMQQEAGEWFLFCPCDTPY 104
>pdb|1HJJ|A Chain A, Biochemical And Structural Analysis Of The Molybdenum
Cofactor Biosynthesis Protein Moba
Length = 201
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 53 DLPG-----LSVIKTEDPEWFFFCPRDRKY 77
D PG LSV++ E EWF FCP D Y
Sbjct: 75 DYPGPLAGMLSVMQQEAGEWFLFCPCDTPY 104
>pdb|1H4D|A Chain A, Biochemical And Structural Analysis Of The Molybdenum
Cofactor Biosynthesis Protein Moba
Length = 201
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 53 DLPG-----LSVIKTEDPEWFFFCPRDRKY 77
D PG LSV++ E EWF FCP D Y
Sbjct: 75 DYPGPLAGMLSVMQQEAGEWFLFCPCDTPY 104
>pdb|1H4E|A Chain A, Biochemical And Structural Analysis Of The Molybdenum
Cofactor Biosynthesis Protein Moba
Length = 201
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 53 DLPG-----LSVIKTEDPEWFFFCPRDRKY 77
D PG LSV++ E EWF FCP + Y
Sbjct: 75 DYPGPLAGMLSVMQQEAGEWFLFCPCNTPY 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,755,052
Number of Sequences: 62578
Number of extensions: 726687
Number of successful extensions: 965
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 10
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)