Query 009388
Match_columns 536
No_of_seqs 224 out of 983
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:05:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 8.7E-54 3E-58 405.4 13.2 157 6-168 12-171 (174)
2 1ut7_A No apical meristem prot 100.0 1.8E-53 6.1E-58 402.4 11.9 156 5-168 13-168 (171)
3 1ldd_A APC2WHB, anaphase promo 11.2 1E+02 0.0036 25.0 1.8 26 10-36 37-63 (74)
4 4dox_A Coat protein; all helix 9.0 1.2E+02 0.004 29.7 1.6 20 12-31 158-177 (226)
5 1f6k_A N-acetylneuraminate lya 6.8 1.6E+02 0.0054 28.9 1.4 18 9-27 106-123 (293)
6 2ehh_A DHDPS, dihydrodipicolin 6.7 1.6E+02 0.0055 28.9 1.4 18 9-27 102-119 (294)
7 2ojp_A DHDPS, dihydrodipicolin 6.7 1.6E+02 0.0056 28.8 1.4 17 9-26 103-119 (292)
8 3cpr_A Dihydrodipicolinate syn 6.6 1.6E+02 0.0056 29.1 1.4 18 9-27 118-135 (304)
9 3dz1_A Dihydrodipicolinate syn 6.5 1.8E+02 0.0061 28.9 1.7 17 9-27 109-125 (313)
10 2yxg_A DHDPS, dihydrodipicolin 6.5 1.7E+02 0.0058 28.7 1.4 18 9-27 102-119 (289)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=8.7e-54 Score=405.37 Aligned_cols=157 Identities=49% Similarity=0.958 Sum_probs=132.0
Q ss_pred cCCCCCcceEcCChHHHHHHHHHHHhCCCCCCceeeecccCCCCCCCCCCCcCcccCCCCceEEeccCCCcCCCCCCccc
Q 009388 6 MESLPLGFRFRPTDEELINHYLRLKINGRDSEVEVIPEIDVCKLEPWDLPGLSVIKTEDPEWFFFCPRDRKYPNGLRSNR 85 (536)
Q Consensus 6 ~~~LPpGfRF~PTDEELV~~YL~~Ki~G~p~~~~~I~evDVY~~ePWdLp~~s~~k~~d~eWYFFspr~rKy~nG~R~nR 85 (536)
...|||||||||||||||.|||++|+.|.++++.+|+++|||++|||+||+.+. .++.+||||++|++||++|.|++|
T Consensus 12 ~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~--~g~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 12 ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERAL--FGAREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp TTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCS--SCSSEEEEEEECCC-----CCSCE
T ss_pred ccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhc--cCCceEEEEeccccccCCCCCcee
Confidence 358999999999999999999999999999999999999999999999998763 357899999999999999999999
Q ss_pred ccCCCeeeecCccceEeecCCCCceeeeeEEEEEEeecCCCCCCCcCeEEEEEecCCcccccC---CCCCCCCCEEEEEE
Q 009388 86 ATEAGYWKATGKDRTIRSRKAGTNACIGMKKTLVFYRGRAPKGERTNWIMHEYRPTREDLLDS---STKPSQAAFVLCRL 162 (536)
Q Consensus 86 atg~G~WKatGk~k~I~s~~sggg~vIG~KKtLvFY~grapkg~KT~WvMhEYrl~~~~l~~~---~~~~~~~e~VLCRI 162 (536)
+|++||||+||++++|.. ++.+||+||+|+||.|++|++.||+|+||||+|........ ......++||||||
T Consensus 90 ~t~~G~WkatG~dk~I~~----~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrv 165 (174)
T 3ulx_A 90 AAGNGYWKATGADKPVAP----RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRL 165 (174)
T ss_dssp EETTEEEEECSCCEEECC----SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEE
T ss_pred ecCCceEccCCCCcEEee----CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEE
Confidence 999999999999999986 35799999999999999999999999999999976543210 01124679999999
Q ss_pred EecCCc
Q 009388 163 FRKPEE 168 (536)
Q Consensus 163 fkK~~~ 168 (536)
|+|+..
T Consensus 166 f~K~~~ 171 (174)
T 3ulx_A 166 YNKKNE 171 (174)
T ss_dssp EESCC-
T ss_pred EEcCCC
Confidence 998753
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.8e-53 Score=402.36 Aligned_cols=156 Identities=50% Similarity=0.944 Sum_probs=129.3
Q ss_pred CcCCCCCcceEcCChHHHHHHHHHHHhCCCCCCceeeecccCCCCCCCCCCCcCcccCCCCceEEeccCCCcCCCCCCcc
Q 009388 5 SMESLPLGFRFRPTDEELINHYLRLKINGRDSEVEVIPEIDVCKLEPWDLPGLSVIKTEDPEWFFFCPRDRKYPNGLRSN 84 (536)
Q Consensus 5 ~~~~LPpGfRF~PTDEELV~~YL~~Ki~G~p~~~~~I~evDVY~~ePWdLp~~s~~k~~d~eWYFFspr~rKy~nG~R~n 84 (536)
+...|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+.+ ..++.+||||+++++||++|.|++
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~--~~g~~ewyFFs~r~~k~~~g~R~~ 90 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA--LFGEKEWYFFSPRDRKYPNGSRPN 90 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHS--SSCSSEEEEEEECCC-------CC
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchh--hcCCccEEEEeccccccCCCCccc
Confidence 446899999999999999999999999999999999999999999999999875 346789999999999999999999
Q ss_pred cccCCCeeeecCccceEeecCCCCceeeeeEEEEEEeecCCCCCCCcCeEEEEEecCCcccccCCCCCCCCCEEEEEEEe
Q 009388 85 RATEAGYWKATGKDRTIRSRKAGTNACIGMKKTLVFYRGRAPKGERTNWIMHEYRPTREDLLDSSTKPSQAAFVLCRLFR 164 (536)
Q Consensus 85 Ratg~G~WKatGk~k~I~s~~sggg~vIG~KKtLvFY~grapkg~KT~WvMhEYrl~~~~l~~~~~~~~~~e~VLCRIfk 164 (536)
|+|++||||+||++++|.. ++.+||+||+|+||+|++|++.||+|+||||+|...... ......++|||||||+
T Consensus 91 R~t~~G~Wk~tG~~k~I~~----~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~--~~~~~~~~~VlCrv~~ 164 (171)
T 1ut7_A 91 RVAGSGYWKATGTDKIIST----EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR--NGSTKLDDWVLCRIYK 164 (171)
T ss_dssp EEETTEEEEEEEEEEEEEE----TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------CCEEEEEEEE
T ss_pred ccCCCCEEeccCCCceEEe----cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc--cCcccCCCEEEEEEEE
Confidence 9999999999999999997 348999999999999999999999999999998754311 1223568999999999
Q ss_pred cCCc
Q 009388 165 KPEE 168 (536)
Q Consensus 165 K~~~ 168 (536)
|+..
T Consensus 165 k~~~ 168 (171)
T 1ut7_A 165 KQSS 168 (171)
T ss_dssp CC--
T ss_pred cCCC
Confidence 9753
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=11.19 E-value=1e+02 Score=25.01 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=21.7
Q ss_pred CCcceEcC-ChHHHHHHHHHHHhCCCCC
Q 009388 10 PLGFRFRP-TDEELINHYLRLKINGRDS 36 (536)
Q Consensus 10 PpGfRF~P-TDEELV~~YL~~Ki~G~p~ 36 (536)
|.|+.|.. |++||-. ||-.|+....+
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 67999998 9999987 79999976654
No 4
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=9.03 E-value=1.2e+02 Score=29.73 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=15.3
Q ss_pred cceEcCChHHHHHHHHHHHh
Q 009388 12 GFRFRPTDEELINHYLRLKI 31 (536)
Q Consensus 12 GfRF~PTDEELV~~YL~~Ki 31 (536)
|..+.||++|+|.|=..+++
T Consensus 158 GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 158 GLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp CCSSCCCHHHHHHHHTC---
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 89999999999998655544
No 5
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=6.82 E-value=1.6e+02 Score=28.94 Aligned_cols=18 Identities=11% Similarity=0.133 Sum_probs=14.3
Q ss_pred CCCcceEcCChHHHHHHHH
Q 009388 9 LPLGFRFRPTDEELINHYL 27 (536)
Q Consensus 9 LPpGfRF~PTDEELV~~YL 27 (536)
+||-| |.|++++|+.||-
T Consensus 106 ~~P~y-~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 106 VTPFY-YKFSFPEIKHYYD 123 (293)
T ss_dssp ECCCS-SCCCHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHH
Confidence 46644 8899999999884
No 6
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=6.75 E-value=1.6e+02 Score=28.91 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=14.2
Q ss_pred CCCcceEcCChHHHHHHHH
Q 009388 9 LPLGFRFRPTDEELINHYL 27 (536)
Q Consensus 9 LPpGfRF~PTDEELV~~YL 27 (536)
+||-| |.||+++|+.||-
T Consensus 102 ~~P~y-~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 102 VVPYY-NKPTQRGLYEHFK 119 (294)
T ss_dssp ECCCS-SCCCHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHH
Confidence 46644 7899999999884
No 7
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=6.69 E-value=1.6e+02 Score=28.84 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=13.8
Q ss_pred CCCcceEcCChHHHHHHH
Q 009388 9 LPLGFRFRPTDEELINHY 26 (536)
Q Consensus 9 LPpGfRF~PTDEELV~~Y 26 (536)
+||-| |.||+++|+.||
T Consensus 103 ~~P~y-~~~s~~~l~~~f 119 (292)
T 2ojp_A 103 VTPYY-NRPSQEGLYQHF 119 (292)
T ss_dssp ECCCS-SCCCHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHH
Confidence 46644 789999999988
No 8
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=6.62 E-value=1.6e+02 Score=29.07 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=14.4
Q ss_pred CCCcceEcCChHHHHHHHH
Q 009388 9 LPLGFRFRPTDEELINHYL 27 (536)
Q Consensus 9 LPpGfRF~PTDEELV~~YL 27 (536)
+|| |-|.|++++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 466 448899999999883
No 9
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=6.53 E-value=1.8e+02 Score=28.94 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=13.5
Q ss_pred CCCcceEcCChHHHHHHHH
Q 009388 9 LPLGFRFRPTDEELINHYL 27 (536)
Q Consensus 9 LPpGfRF~PTDEELV~~YL 27 (536)
+||- |.||+++|+.||-
T Consensus 109 ~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYFR 125 (313)
T ss_dssp CCCT--TCCSHHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHHH
Confidence 5774 4599999999874
No 10
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=6.53 E-value=1.7e+02 Score=28.69 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=14.2
Q ss_pred CCCcceEcCChHHHHHHHH
Q 009388 9 LPLGFRFRPTDEELINHYL 27 (536)
Q Consensus 9 LPpGfRF~PTDEELV~~YL 27 (536)
+||-| |.||+++|+.||-
T Consensus 102 ~~P~y-~~~s~~~l~~~f~ 119 (289)
T 2yxg_A 102 ITPYY-NKPTQEGLRKHFG 119 (289)
T ss_dssp ECCCS-SCCCHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHH
Confidence 46644 7899999999883
Done!