Query 009389
Match_columns 536
No_of_seqs 198 out of 972
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:06:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 2.8E-53 9.5E-58 401.8 14.5 156 5-162 10-170 (174)
2 1ut7_A No apical meristem prot 100.0 2.9E-53 9.9E-58 400.8 12.4 156 6-163 13-168 (171)
3 1jgn_B PAIP2, polyadenylate-bi 12.2 1.2E+02 0.0041 19.9 1.9 19 387-405 4-22 (26)
4 1ldd_A APC2WHB, anaphase promo 10.9 1.2E+02 0.0041 24.6 2.1 27 11-38 37-64 (74)
5 2oh5_A Polyhedrin, C-polyhedri 10.6 1.5E+02 0.005 27.9 2.8 28 90-117 140-168 (248)
6 4dox_A Coat protein; all helix 7.5 1.7E+02 0.0058 28.6 2.0 27 7-33 152-178 (226)
7 3nr5_A MAF1, repressor of RNA 5.5 1.4E+02 0.0049 27.7 0.2 13 42-54 119-131 (164)
8 3g21_A GAG polyprotein, capsid 5.0 2.7E+02 0.0092 23.0 1.5 13 18-30 64-76 (77)
9 2e9g_A AP-1 complex subunit ga 4.5 2.6E+02 0.009 24.4 1.3 11 412-422 3-13 (131)
10 3daq_A DHDPS, dihydrodipicolin 4.4 2E+02 0.0069 28.2 0.5 17 10-27 104-120 (292)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=2.8e-53 Score=401.81 Aligned_cols=156 Identities=50% Similarity=0.965 Sum_probs=135.9
Q ss_pred CCCCCCCCCceeCCChHHHHHHHHHHHhcCCCCCCCCeeeccCCCCCCCCCCcccccCCCCcceeeeeccccccCCCCcc
Q 009389 5 FASTSLAPGFRFHPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKSSLKTRDKEWYFFSMLDKKYGNGSRT 84 (536)
Q Consensus 5 ~~~~~LPPGfRF~PTDEELI~~YL~rKi~G~pl~~~~I~evDVY~~dPWdLp~~~~~~~~d~eWYFFs~r~rK~~nG~R~ 84 (536)
.+++.|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+||+.+.. ++.+|||||++++||++|.|+
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~ 87 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRP 87 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCS
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhcc--CCceEEEEeccccccCCCCCc
Confidence 356899999999999999999999999999999999999999999999999998753 467999999999999999999
Q ss_pred cccCccceeeecCCCceeecCCeeEEEEEEEEeecCCCCCCCCcCeEEEEEEeCCCchhh----c-CCCCCceEEEEEee
Q 009389 85 NRATEKGYWKTTGKDRPVHHNTRTVGMKKTLVYHMGRAPHGERTNWVMHEYRLTDDDLEK----A-GVAQDTFVLCRIFQ 159 (536)
Q Consensus 85 nR~tggGyWK~tG~~k~I~~~g~vVG~KKtLvFy~Gr~p~G~kT~WvMhEY~L~~~~~~~----~-~~~~d~~VLCRIy~ 159 (536)
+|+|++||||++|++++|..+|.+||+||+|+||.|++|++.||+|+||||+|.+..... . ....++|||||||+
T Consensus 88 nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~ 167 (174)
T 3ulx_A 88 NRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167 (174)
T ss_dssp CEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred eeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence 999999999999999999988999999999999999999999999999999999865321 1 12357999999999
Q ss_pred cCC
Q 009389 160 KSG 162 (536)
Q Consensus 160 Ks~ 162 (536)
|++
T Consensus 168 K~~ 170 (174)
T 3ulx_A 168 KKN 170 (174)
T ss_dssp SCC
T ss_pred cCC
Confidence 865
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2.9e-53 Score=400.77 Aligned_cols=156 Identities=49% Similarity=0.917 Sum_probs=132.0
Q ss_pred CCCCCCCCceeCCChHHHHHHHHHHHhcCCCCCCCCeeeccCCCCCCCCCCcccccCCCCcceeeeeccccccCCCCccc
Q 009389 6 ASTSLAPGFRFHPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKSSLKTRDKEWYFFSMLDKKYGNGSRTN 85 (536)
Q Consensus 6 ~~~~LPPGfRF~PTDEELI~~YL~rKi~G~pl~~~~I~evDVY~~dPWdLp~~~~~~~~d~eWYFFs~r~rK~~nG~R~n 85 (536)
....|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+||+.+. .++.+|||||++++||++|.|++
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~--~g~~ewyFFs~r~~k~~~g~R~~ 90 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPN 90 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CC
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhh--cCCccEEEEeccccccCCCCccc
Confidence 4688999999999999999999999999999999999999999999999999874 34689999999999999999999
Q ss_pred ccCccceeeecCCCceeecCCeeEEEEEEEEeecCCCCCCCCcCeEEEEEEeCCCchhhcCCCCCceEEEEEeecCCC
Q 009389 86 RATEKGYWKTTGKDRPVHHNTRTVGMKKTLVYHMGRAPHGERTNWVMHEYRLTDDDLEKAGVAQDTFVLCRIFQKSGS 163 (536)
Q Consensus 86 R~tggGyWK~tG~~k~I~~~g~vVG~KKtLvFy~Gr~p~G~kT~WvMhEY~L~~~~~~~~~~~~d~~VLCRIy~Ks~~ 163 (536)
|+|++||||++|++++|..++.+||+||+|+||.|++|++.||+|+||||+|...........+++|||||||+|+..
T Consensus 91 R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred ccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 999999999999999999889999999999999999999999999999999998752222234589999999998754
No 3
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=12.23 E-value=1.2e+02 Score=19.87 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=15.1
Q ss_pred cCCCCcccccccCCCChhh
Q 009389 387 SEQKPDIVKSESDVKYPFL 405 (536)
Q Consensus 387 s~~~~~~~~~~~~~~~~~~ 405 (536)
|.-+|++.+|.++++|--+
T Consensus 4 s~lnp~akef~pgvkygni 22 (26)
T 1jgn_B 4 SNLNPNAKEFVPGVKYGNI 22 (26)
T ss_dssp CSSCTTCCCCCTTSCTTCC
T ss_pred ccCCcchhhcCCCceecce
Confidence 4457899999999999544
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=10.92 E-value=1.2e+02 Score=24.64 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.2
Q ss_pred CCCceeCC-ChHHHHHHHHHHHhcCCCCC
Q 009389 11 APGFRFHP-TDEELVRYYLKRKVCHRSLR 38 (536)
Q Consensus 11 PPGfRF~P-TDEELI~~YL~rKi~G~pl~ 38 (536)
|.|+.|.. |++||-. ||.+|+....+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 67899998 9999888 699999876553
No 5
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=10.58 E-value=1.5e+02 Score=27.95 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=23.0
Q ss_pred cceeeecC-CCceeecCCeeEEEEEEEEe
Q 009389 90 KGYWKTTG-KDRPVHHNTRTVGMKKTLVY 117 (536)
Q Consensus 90 gGyWK~tG-~~k~I~~~g~vVG~KKtLvF 117 (536)
.--|.+|| +-|.|+..|++||+...|..
T Consensus 140 shpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred cCCccccCceEEEeeecceEeeeeeeeec
Confidence 34699999 56788889999999988765
No 6
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=7.52 E-value=1.7e+02 Score=28.59 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=18.6
Q ss_pred CCCCCCCceeCCChHHHHHHHHHHHhc
Q 009389 7 STSLAPGFRFHPTDEELVRYYLKRKVC 33 (536)
Q Consensus 7 ~~~LPPGfRF~PTDEELI~~YL~rKi~ 33 (536)
++..+-|..+.||++|+|.|=..+++.
T Consensus 152 Al~P~~GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 152 AMQPPSGLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp SCCCTTCCSSCCCHHHHHHHHTC----
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 355566999999999999986555443
No 7
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=5.46 E-value=1.4e+02 Score=27.69 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=10.9
Q ss_pred eeeccCCCCCCCC
Q 009389 42 ICVTDIYKSEPWD 54 (536)
Q Consensus 42 I~evDVY~~dPWd 54 (536)
+.++|||.+.|-.
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 6688999999983
No 8
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=4.97 E-value=2.7e+02 Score=22.95 Aligned_cols=13 Identities=38% Similarity=0.749 Sum_probs=10.6
Q ss_pred CChHHHHHHHHHH
Q 009389 18 PTDEELVRYYLKR 30 (536)
Q Consensus 18 PTDEELI~~YL~r 30 (536)
|+.||||.|.|.+
T Consensus 64 ~~~~e~ik~~~~~ 76 (77)
T 3g21_A 64 TTPGEIIKYVLDR 76 (77)
T ss_dssp CSHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcc
Confidence 7889999987754
No 9
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=4.55 E-value=2.6e+02 Score=24.40 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=8.8
Q ss_pred ccCCCCCcccc
Q 009389 412 LGNVAAAPAFA 422 (536)
Q Consensus 412 l~~ipappa~a 422 (536)
-|+||.|||.+
T Consensus 3 ~~~~~~~~~~~ 13 (131)
T 2e9g_A 3 SGSSGPPPAPI 13 (131)
T ss_dssp CCCCSCCCCCC
T ss_pred CCCCCCCCCCC
Confidence 38999999665
No 10
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=4.42 E-value=2e+02 Score=28.19 Aligned_cols=17 Identities=18% Similarity=0.509 Sum_probs=13.6
Q ss_pred CCCCceeCCChHHHHHHH
Q 009389 10 LAPGFRFHPTDEELVRYY 27 (536)
Q Consensus 10 LPPGfRF~PTDEELI~~Y 27 (536)
+|| |.|.||+++|+.||
T Consensus 104 ~~P-~y~~~~~~~l~~~f 120 (292)
T 3daq_A 104 ITP-YYNKTNQRGLVKHF 120 (292)
T ss_dssp ECC-CSSCCCHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHH
Confidence 445 55789999999987
Done!