Query 009392
Match_columns 535
No_of_seqs 229 out of 1889
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 12:33:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 9E-107 2E-111 867.4 58.9 508 21-528 1-518 (539)
2 PLN00044 multi-copper oxidase- 100.0 3E-105 7E-110 847.7 56.6 497 6-520 6-518 (596)
3 PLN02991 oxidoreductase 100.0 8E-104 2E-108 832.7 55.7 473 7-521 12-496 (543)
4 PLN02354 copper ion binding / 100.0 2E-103 4E-108 835.4 54.5 471 19-521 23-504 (552)
5 PLN02792 oxidoreductase 100.0 5E-103 1E-107 828.3 54.2 481 19-528 12-502 (536)
6 PLN02168 copper ion binding / 100.0 3E-102 7E-107 822.2 56.3 473 19-528 22-514 (545)
7 PLN02835 oxidoreductase 100.0 5E-101 1E-105 816.1 55.6 471 18-528 24-510 (539)
8 KOG1263 Multicopper oxidases [ 100.0 1.8E-99 4E-104 794.5 54.4 507 14-532 19-538 (563)
9 PLN02191 L-ascorbate oxidase 100.0 1.2E-97 3E-102 796.5 57.2 504 2-527 4-544 (574)
10 PLN02604 oxidoreductase 100.0 6.6E-97 1E-101 792.9 58.0 503 5-528 6-545 (566)
11 TIGR03388 ascorbase L-ascorbat 100.0 8.1E-96 2E-100 782.5 55.6 486 23-527 1-521 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 1.1E-93 2.3E-98 763.7 53.5 478 24-527 9-529 (538)
13 TIGR01480 copper_res_A copper- 100.0 7.3E-77 1.6E-81 633.1 49.3 409 24-527 46-584 (587)
14 PRK10965 multicopper oxidase; 100.0 5.3E-71 1.1E-75 584.3 45.4 416 23-527 45-520 (523)
15 PRK10883 FtsI repressor; Provi 100.0 2.9E-69 6.3E-74 566.4 42.9 394 25-529 47-467 (471)
16 COG2132 SufI Putative multicop 100.0 8.4E-56 1.8E-60 467.0 41.3 402 24-527 34-446 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 2.4E-48 5.1E-53 387.6 25.9 264 20-308 24-300 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 8.8E-37 1.9E-41 260.2 12.7 116 29-144 1-117 (117)
19 PF00394 Cu-oxidase: Multicopp 100.0 1.7E-28 3.7E-33 222.5 14.3 150 155-306 1-159 (159)
20 PF07731 Cu-oxidase_2: Multico 99.9 6E-25 1.3E-29 194.9 6.5 101 427-531 30-136 (138)
21 TIGR03095 rusti_cyanin rusticy 99.8 6.2E-18 1.4E-22 149.6 13.7 104 36-141 35-148 (148)
22 TIGR01480 copper_res_A copper- 99.7 3.3E-15 7.1E-20 160.5 21.0 226 45-284 249-572 (587)
23 TIGR02376 Cu_nitrite_red nitri 99.6 4.3E-13 9.3E-18 134.3 21.3 230 186-520 47-279 (311)
24 PRK10965 multicopper oxidase; 99.4 9.7E-12 2.1E-16 132.8 22.7 233 41-285 211-509 (523)
25 TIGR03096 nitroso_cyanin nitro 99.4 1.1E-12 2.4E-17 112.1 11.6 105 11-131 12-124 (135)
26 PLN02835 oxidoreductase 99.4 8.7E-12 1.9E-16 133.6 18.9 239 42-284 191-497 (539)
27 TIGR03389 laccase laccase, pla 99.4 1.2E-10 2.6E-15 125.7 24.0 241 43-285 167-506 (539)
28 PRK10883 FtsI repressor; Provi 99.3 7.5E-11 1.6E-15 124.8 19.8 220 40-285 207-454 (471)
29 COG2132 SufI Putative multicop 99.2 2.3E-10 5.1E-15 121.3 16.5 233 38-285 185-435 (451)
30 PLN02168 copper ion binding / 99.1 2.8E-09 6.2E-14 114.1 20.2 238 42-284 188-501 (545)
31 TIGR03388 ascorbase L-ascorbat 99.1 5E-09 1.1E-13 113.3 21.9 229 55-285 204-510 (541)
32 PLN02991 oxidoreductase 99.1 6.8E-09 1.5E-13 111.0 20.9 240 42-284 190-496 (543)
33 PLN02354 copper ion binding / 99.1 6.1E-09 1.3E-13 112.0 20.5 239 43-284 190-504 (552)
34 TIGR03390 ascorbOXfungal L-asc 99.1 3.4E-09 7.4E-14 114.2 18.6 241 43-285 172-518 (538)
35 PLN02604 oxidoreductase 99.1 3.6E-09 7.9E-14 114.7 17.6 226 54-284 224-532 (566)
36 PLN02792 oxidoreductase 99.0 2.2E-08 4.8E-13 107.2 21.7 241 41-284 178-489 (536)
37 PF07731 Cu-oxidase_2: Multico 98.9 1.2E-08 2.7E-13 90.1 11.6 79 205-285 32-121 (138)
38 PLN02191 L-ascorbate oxidase 98.9 7.2E-08 1.6E-12 104.5 18.9 236 47-285 219-533 (574)
39 PLN00044 multi-copper oxidase- 98.7 7E-07 1.5E-11 96.5 20.3 227 54-284 217-519 (596)
40 PRK02710 plastocyanin; Provisi 98.7 1.4E-07 3E-12 80.9 11.9 73 54-141 47-119 (119)
41 PF13473 Cupredoxin_1: Cupredo 98.4 5.2E-07 1.1E-11 75.5 5.1 74 50-140 31-104 (104)
42 KOG1263 Multicopper oxidases [ 98.4 2.6E-05 5.7E-10 83.6 18.9 242 42-285 192-522 (563)
43 TIGR02656 cyanin_plasto plasto 98.2 1E-05 2.2E-10 66.9 8.6 80 54-141 17-99 (99)
44 TIGR02657 amicyanin amicyanin. 98.1 2.9E-05 6.2E-10 62.0 9.0 73 54-141 11-83 (83)
45 PF00394 Cu-oxidase: Multicopp 98.0 2.7E-05 5.7E-10 70.6 8.1 85 41-126 35-136 (159)
46 PF00127 Copper-bind: Copper b 97.9 3.3E-05 7.2E-10 63.9 7.4 81 54-141 17-99 (99)
47 PF07732 Cu-oxidase_3: Multico 97.9 2.8E-05 6E-10 66.4 5.9 86 187-286 15-101 (117)
48 PRK02888 nitrous-oxide reducta 97.8 6.5E-05 1.4E-09 80.3 9.6 99 34-143 533-635 (635)
49 TIGR03094 sulfo_cyanin sulfocy 97.7 0.0012 2.5E-08 59.0 13.0 97 45-145 75-189 (195)
50 PF06525 SoxE: Sulfocyanin (So 97.6 0.001 2.2E-08 60.8 12.0 102 43-145 74-190 (196)
51 TIGR03095 rusti_cyanin rusticy 97.5 0.00047 1E-08 61.3 8.4 86 185-284 40-133 (148)
52 COG3794 PetE Plastocyanin [Ene 97.5 0.0013 2.8E-08 56.3 10.2 75 54-142 54-128 (128)
53 TIGR02375 pseudoazurin pseudoa 97.3 0.0015 3.3E-08 55.3 9.1 75 54-144 15-90 (116)
54 TIGR03096 nitroso_cyanin nitro 97.2 0.0017 3.7E-08 56.0 8.0 62 206-285 60-121 (135)
55 TIGR03102 halo_cynanin halocya 97.1 0.0041 8.9E-08 52.6 9.1 73 54-141 42-115 (115)
56 PF13473 Cupredoxin_1: Cupredo 96.6 0.0099 2.1E-07 49.5 7.7 60 207-284 35-94 (104)
57 COG4454 Uncharacterized copper 96.2 0.051 1.1E-06 47.7 9.8 88 50-142 59-158 (158)
58 TIGR02656 cyanin_plasto plasto 95.8 0.025 5.4E-07 46.6 6.1 76 432-528 18-97 (99)
59 PRK10378 inactive ferrous ion 94.6 0.33 7.1E-06 49.7 11.0 79 50-144 40-119 (375)
60 PF06525 SoxE: Sulfocyanin (So 94.5 0.18 3.9E-06 46.3 8.0 89 187-284 74-171 (196)
61 COG4454 Uncharacterized copper 94.3 0.084 1.8E-06 46.3 5.2 74 207-284 63-142 (158)
62 PF00116 COX2: Cytochrome C ox 93.7 0.42 9.2E-06 40.8 8.5 73 53-140 45-119 (120)
63 PRK02888 nitrous-oxide reducta 93.1 0.15 3.3E-06 55.2 5.6 61 432-520 556-616 (635)
64 PF00116 COX2: Cytochrome C ox 92.9 1.5 3.2E-05 37.5 10.4 62 207-287 46-107 (120)
65 PF00127 Copper-bind: Copper b 92.6 0.13 2.9E-06 42.2 3.5 76 431-527 17-96 (99)
66 TIGR02695 azurin azurin. Azuri 92.0 1.1 2.3E-05 38.2 8.1 89 51-139 13-124 (125)
67 PRK02710 plastocyanin; Provisi 88.8 1.5 3.3E-05 37.3 6.7 61 206-284 46-106 (119)
68 PF12690 BsuPI: Intracellular 88.6 4.4 9.5E-05 32.0 8.6 66 216-282 3-82 (82)
69 TIGR02695 azurin azurin. Azuri 85.8 4.9 0.00011 34.3 7.8 78 206-283 15-111 (125)
70 TIGR02866 CoxB cytochrome c ox 84.8 3.7 8E-05 38.5 7.5 62 207-287 117-178 (201)
71 PF12690 BsuPI: Intracellular 84.3 3.7 8E-05 32.4 6.1 58 55-123 17-80 (82)
72 TIGR02657 amicyanin amicyanin. 84.0 3.4 7.5E-05 32.6 6.0 64 206-285 10-73 (83)
73 COG1622 CyoA Heme/copper-type 82.2 5.3 0.00012 38.7 7.5 77 54-145 137-215 (247)
74 TIGR02866 CoxB cytochrome c ox 81.3 5.1 0.00011 37.6 7.0 76 54-144 117-194 (201)
75 TIGR02375 pseudoazurin pseudoa 80.4 4.4 9.5E-05 34.3 5.6 62 206-285 14-75 (116)
76 COG1470 Predicted membrane pro 78.5 94 0.002 32.8 17.9 179 56-287 278-470 (513)
77 COG1622 CyoA Heme/copper-type 77.4 8.3 0.00018 37.3 7.2 63 207-288 137-199 (247)
78 TIGR03102 halo_cynanin halocya 77.0 7.8 0.00017 32.8 6.0 63 206-285 41-103 (115)
79 PF13956 Ibs_toxin: Toxin Ibs, 75.3 1.8 3.9E-05 23.3 1.1 15 1-15 1-15 (19)
80 COG4263 NosZ Nitrous oxide red 74.4 5 0.00011 41.5 4.9 77 54-141 558-636 (637)
81 PF07705 CARDB: CARDB; InterP 73.5 41 0.00089 26.8 9.6 66 210-284 14-83 (101)
82 TIGR03094 sulfo_cyanin sulfocy 73.4 17 0.00037 33.0 7.5 87 188-284 74-170 (195)
83 PF04151 PPC: Bacterial pre-pe 71.5 26 0.00056 26.4 7.3 65 207-283 5-69 (70)
84 PF01835 A2M_N: MG2 domain; I 70.5 16 0.00034 29.7 6.3 70 211-284 11-85 (99)
85 KOG4063 Major epididymal secre 67.9 45 0.00098 29.4 8.6 62 53-114 47-122 (158)
86 PF05506 DUF756: Domain of unk 66.3 33 0.00072 27.3 7.3 56 52-114 7-65 (89)
87 TIGR03079 CH4_NH3mon_ox_B meth 65.7 28 0.0006 35.3 7.8 17 98-114 336-352 (399)
88 COG3794 PetE Plastocyanin [Ene 65.0 27 0.00059 30.1 6.7 64 206-286 53-116 (128)
89 PRK01904 hypothetical protein; 63.0 12 0.00026 35.6 4.7 59 1-71 1-68 (219)
90 PRK10378 inactive ferrous ion 62.9 24 0.00052 36.4 7.1 63 206-284 43-105 (375)
91 PRK10449 heat-inducible protei 62.8 11 0.00024 33.1 4.2 44 1-51 1-44 (140)
92 MTH00140 COX2 cytochrome c oxi 60.8 28 0.00061 33.3 6.9 62 207-287 140-201 (228)
93 TIGR01433 CyoA cytochrome o ub 58.8 28 0.0006 33.3 6.4 62 207-287 139-200 (226)
94 PF14344 DUF4397: Domain of un 58.2 1.1E+02 0.0024 25.6 11.7 22 251-272 61-82 (122)
95 COG2967 ApaG Uncharacterized p 57.7 13 0.00028 31.2 3.3 55 65-120 33-95 (126)
96 COG5633 Predicted periplasmic 57.7 61 0.0013 27.2 7.2 30 53-82 46-76 (123)
97 PF05753 TRAP_beta: Translocon 56.8 29 0.00064 31.9 6.0 30 93-122 74-104 (181)
98 MTH00008 COX2 cytochrome c oxi 52.9 73 0.0016 30.5 8.2 61 207-286 140-200 (228)
99 PF10633 NPCBM_assoc: NPCBM-as 52.0 64 0.0014 24.8 6.5 64 211-283 1-74 (78)
100 MTH00129 COX2 cytochrome c oxi 50.1 71 0.0015 30.6 7.7 61 207-286 140-200 (230)
101 MTH00098 COX2 cytochrome c oxi 49.7 56 0.0012 31.3 6.9 61 207-286 140-200 (227)
102 TIGR01432 QOXA cytochrome aa3 49.4 42 0.00092 31.8 6.0 62 207-287 130-191 (217)
103 COG1188 Ribosome-associated he 48.8 13 0.00027 30.4 1.9 35 44-78 35-69 (100)
104 PF10633 NPCBM_assoc: NPCBM-as 48.5 28 0.0006 26.9 3.9 60 59-122 2-70 (78)
105 MTH00047 COX2 cytochrome c oxi 48.2 64 0.0014 30.0 6.8 61 208-287 117-177 (194)
106 PF04744 Monooxygenase_B: Mono 45.5 67 0.0015 32.7 6.8 16 99-114 318-333 (381)
107 MTH00140 COX2 cytochrome c oxi 45.0 81 0.0018 30.2 7.2 77 53-144 139-217 (228)
108 MTH00051 COX2 cytochrome c oxi 44.4 1E+02 0.0023 29.6 7.9 61 207-286 144-204 (234)
109 PRK05461 apaG CO2+/MG2+ efflux 44.0 34 0.00073 29.5 4.0 22 91-113 66-87 (127)
110 MTH00185 COX2 cytochrome c oxi 43.7 1.2E+02 0.0027 29.0 8.2 62 207-287 140-201 (230)
111 PRK13202 ureB urease subunit b 42.8 71 0.0015 26.3 5.3 64 55-120 12-88 (104)
112 PF11614 FixG_C: IG-like fold 42.4 86 0.0019 26.3 6.3 49 216-273 34-84 (118)
113 PF05938 Self-incomp_S1: Plant 42.0 77 0.0017 26.2 5.9 70 65-143 2-71 (110)
114 PF14524 Wzt_C: Wzt C-terminal 42.0 1.2E+02 0.0026 25.8 7.4 72 210-284 30-107 (142)
115 PRK05461 apaG CO2+/MG2+ efflux 41.9 86 0.0019 27.0 6.1 49 216-267 32-84 (127)
116 PRK10525 cytochrome o ubiquino 41.5 61 0.0013 32.6 5.9 62 207-287 151-212 (315)
117 PF07437 YfaZ: YfaZ precursor; 41.4 31 0.00067 31.7 3.6 32 1-34 1-32 (180)
118 PRK13254 cytochrome c-type bio 40.7 41 0.00089 29.8 4.1 71 21-96 31-102 (148)
119 PF04379 DUF525: Protein of un 40.1 64 0.0014 25.9 4.8 50 216-268 15-68 (90)
120 PRK15211 fimbrial chaperone pr 38.9 93 0.002 29.8 6.6 17 54-70 75-91 (229)
121 PRK10397 lipoprotein; Provisio 38.7 1.4E+02 0.0031 25.5 6.6 30 56-85 80-113 (137)
122 PRK15208 long polar fimbrial c 38.4 1.4E+02 0.0031 28.5 7.8 17 54-70 74-90 (228)
123 PRK13792 lysozyme inhibitor; P 38.1 1.8E+02 0.0039 25.0 7.4 11 1-11 1-11 (127)
124 MTH00117 COX2 cytochrome c oxi 37.6 1.3E+02 0.0028 28.7 7.4 61 207-286 140-200 (227)
125 PF14874 PapD-like: Flagellar- 37.4 2.2E+02 0.0047 22.9 8.4 59 210-280 15-82 (102)
126 PF07691 PA14: PA14 domain; I 37.4 2.2E+02 0.0047 24.3 8.4 61 208-273 53-120 (145)
127 smart00758 PA14 domain in bact 36.0 2.3E+02 0.0049 24.1 8.2 61 208-273 51-112 (136)
128 COG3354 FlaG Putative archaeal 35.9 2.4E+02 0.0051 24.8 7.7 64 215-283 70-141 (154)
129 PF15240 Pro-rich: Proline-ric 35.8 19 0.0004 32.8 1.2 16 4-19 1-16 (179)
130 PRK15188 fimbrial chaperone pr 35.7 1.5E+02 0.0033 28.4 7.4 16 54-69 80-95 (228)
131 MTH00076 COX2 cytochrome c oxi 35.7 1.8E+02 0.004 27.8 8.0 61 207-286 140-200 (228)
132 PTZ00047 cytochrome c oxidase 35.4 2.6E+02 0.0056 25.2 8.2 62 207-287 73-134 (162)
133 PF14451 Ub-Mut7C: Mut7-C ubiq 35.3 29 0.00063 27.3 2.1 27 41-67 48-74 (81)
134 PF05506 DUF756: Domain of unk 34.7 2.3E+02 0.005 22.4 10.8 58 215-283 20-77 (89)
135 PF10989 DUF2808: Protein of u 34.0 53 0.0011 29.0 3.8 29 99-127 96-127 (146)
136 TIGR00192 urease_beta urease, 33.7 1.2E+02 0.0027 24.8 5.4 64 55-120 12-87 (101)
137 PTZ00047 cytochrome c oxidase 33.6 97 0.0021 27.9 5.3 65 431-527 73-141 (162)
138 TIGR01433 CyoA cytochrome o ub 32.9 45 0.00098 31.9 3.4 67 431-529 139-209 (226)
139 PF11142 DUF2917: Protein of u 32.3 1.3E+02 0.0028 22.4 5.0 47 209-267 2-48 (63)
140 PRK15218 fimbrial chaperone pr 32.2 1.5E+02 0.0033 28.3 6.8 18 54-71 75-92 (226)
141 PRK13203 ureB urease subunit b 31.9 1.4E+02 0.003 24.5 5.4 64 55-120 12-87 (102)
142 PRK15299 fimbrial chaperone pr 31.2 2.2E+02 0.0049 27.1 7.9 17 54-70 77-93 (227)
143 PRK04517 hypothetical protein; 31.1 1.3E+02 0.0028 28.5 6.1 58 1-69 1-68 (216)
144 MTH00047 COX2 cytochrome c oxi 30.7 3.2E+02 0.0069 25.4 8.5 75 55-144 117-193 (194)
145 PF11948 DUF3465: Protein of u 30.0 96 0.0021 26.7 4.4 22 102-124 86-111 (131)
146 cd00407 Urease_beta Urease bet 29.4 1.7E+02 0.0037 24.0 5.5 64 55-120 12-87 (101)
147 cd00918 Der-p2_like Several gr 28.8 2.8E+02 0.006 23.6 7.2 68 45-114 12-87 (120)
148 MTH00129 COX2 cytochrome c oxi 28.6 2.3E+02 0.005 27.1 7.4 75 54-143 140-216 (230)
149 MTH00008 COX2 cytochrome c oxi 28.3 2.5E+02 0.0055 26.8 7.6 75 54-143 140-216 (228)
150 TIGR02988 YaaA_near_RecF S4 do 27.7 33 0.00072 24.9 1.2 23 44-66 35-58 (59)
151 MTH00154 COX2 cytochrome c oxi 27.6 3.3E+02 0.0071 26.0 8.3 62 207-287 140-201 (227)
152 PRK09918 putative fimbrial cha 27.6 1.6E+02 0.0035 28.1 6.2 62 206-272 75-136 (230)
153 PF07172 GRP: Glycine rich pro 27.1 35 0.00076 27.8 1.3 11 13-23 17-27 (95)
154 cd00916 Npc2_like Niemann-Pick 26.8 2.6E+02 0.0056 23.7 6.7 61 54-114 22-91 (123)
155 PRK15216 putative fimbrial bio 26.3 2.7E+02 0.0059 27.8 7.3 71 1-71 1-88 (340)
156 KOG4088 Translocon-associated 25.4 3.6E+02 0.0079 23.5 7.1 33 30-63 44-76 (167)
157 PRK09838 periplasmic copper-bi 25.1 2.3E+02 0.0051 23.9 5.9 23 57-79 88-110 (115)
158 PRK11372 lysozyme inhibitor; P 24.6 2.1E+02 0.0046 23.9 5.5 18 1-19 3-20 (109)
159 PF14326 DUF4384: Domain of un 24.4 3.4E+02 0.0074 21.1 8.5 14 211-224 3-16 (83)
160 PRK13205 ureB urease subunit b 24.2 2E+02 0.0044 25.4 5.4 64 55-120 12-87 (162)
161 PRK13198 ureB urease subunit b 24.2 2E+02 0.0043 25.5 5.3 64 55-120 40-115 (158)
162 PRK13201 ureB urease subunit b 23.8 2.2E+02 0.0048 24.5 5.5 65 55-121 12-88 (136)
163 PRK13204 ureB urease subunit b 23.2 2.1E+02 0.0046 25.3 5.3 64 55-120 35-110 (159)
164 PF08139 LPAM_1: Prokaryotic m 23.1 63 0.0014 19.3 1.5 15 3-17 8-23 (25)
165 PRK03757 hypothetical protein; 22.5 1.5E+02 0.0032 27.5 4.7 29 1-30 1-29 (191)
166 PRK09918 putative fimbrial cha 22.3 3.9E+02 0.0085 25.5 7.8 15 257-271 187-201 (230)
167 PRK13791 lysozyme inhibitor; P 22.2 4.5E+02 0.0097 22.1 7.0 11 61-71 39-49 (113)
168 MTH00051 COX2 cytochrome c oxi 22.1 2.9E+02 0.0063 26.5 6.8 75 54-143 144-220 (234)
169 PRK07440 hypothetical protein; 22.0 78 0.0017 24.0 2.3 26 42-67 35-64 (70)
170 TIGR03352 VI_chp_3 type VI sec 22.0 1.4E+02 0.0031 26.3 4.3 18 97-114 85-102 (146)
171 TIGR02745 ccoG_rdxA_fixG cytoc 21.9 2.8E+02 0.006 29.4 7.1 50 216-273 349-399 (434)
172 MTH00098 COX2 cytochrome c oxi 21.8 3.1E+02 0.0067 26.2 6.9 73 55-142 141-215 (227)
173 KOG4680 Uncharacterized conser 21.7 5.5E+02 0.012 22.5 9.0 85 22-122 32-122 (153)
174 KOG3858 Ephrin, ligand for Eph 21.6 1.4E+02 0.0031 28.5 4.4 14 54-67 43-56 (233)
175 PF11611 DUF4352: Domain of un 21.2 4.1E+02 0.0088 21.9 7.0 69 212-283 32-113 (123)
176 PRK10884 SH3 domain-containing 21.1 3.7E+02 0.0079 25.3 7.0 10 61-70 65-74 (206)
177 PRK05659 sulfur carrier protei 20.9 91 0.002 23.0 2.5 26 42-67 31-60 (66)
178 PLN03148 Blue copper-like prot 20.8 4.8E+02 0.01 23.7 7.4 32 111-144 89-121 (167)
179 PF06775 Seipin: Putative adip 20.8 98 0.0021 28.9 3.2 50 256-305 50-106 (199)
180 PF06291 Lambda_Bor: Bor prote 20.7 75 0.0016 26.0 2.0 18 1-18 1-18 (97)
181 PRK15175 Vi polysaccharide exp 20.7 1.8E+02 0.0038 30.0 5.2 16 56-71 70-85 (355)
182 cd00565 ThiS ThiaminS ubiquiti 20.4 83 0.0018 23.2 2.1 24 44-67 32-59 (65)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=9.5e-107 Score=867.40 Aligned_cols=508 Identities=67% Similarity=1.138 Sum_probs=420.7
Q ss_pred ceeEEEEEEEEEEeeeccCCceeEEEECCCCCCcEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccC
Q 009392 21 CRVRHYKFNVVMKNSTKLCSSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQC 100 (535)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~ 100 (535)
|++|+|+|+|+++.+++||+++.+++|||++|||+|++++||+|+|+|+|+|+++|+|||||++|.+++|+||+|++|||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEEeCCCCcceeEecChhhhhcccEEEEEEeCCCCCCCCCCCCCceEEEEEEeeccCChHHHHHHHHhCC
Q 009392 101 PIQSGHSYVYNFTITGQRGTLLWHAHILWLRATVHGAIVILPKRGVPYPFPKPHKEVVVVLAEWWKSDTEAVINQALQSG 180 (535)
Q Consensus 101 ~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 180 (535)
||+||++|+|+|++.+++||||||||.+.+++||+|+|||+++.+..+++...++|++|+++||++.....++......|
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 99999999999998569999999999988889999999999987766666677899999999999998888777666666
Q ss_pred CCCCCCceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeC
Q 009392 181 LAPNVSDSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIA 260 (535)
Q Consensus 181 ~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~ 260 (535)
..+.++++++|||+.++.++|+....+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|+.++++.|+
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~ 240 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIG 240 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEec
Confidence 55667899999999887788987777899999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEeCCCCceeEEEeecCCCCCcccCCCceEEEEEEcCCCCCCCCCCCCCCCCCCcccccccccccccccCCC
Q 009392 261 PGQTTNVLLSADKTSGKYLVAASPFMDAPIAVDNVTATATLHYSGTLASSATTLTSTPPKNGTAIANKFIDSLRSLNSKK 340 (535)
Q Consensus 261 pGeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~ 340 (535)
+||||||+|++++++|+||||+.+..++...+.+....|||+|.++.....+..+..+..++......+...++++..+.
T Consensus 241 ~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 320 (539)
T TIGR03389 241 PGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQ 320 (539)
T ss_pred CCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccC
Confidence 99999999999988899999998765443333456789999999865533232222333333322212222344444344
Q ss_pred CCCCCCCccceEEEEEeecCcCCCC--CccCCCCCeeEEEEcCcccccChhhHHHhhhcccCCccccCCCCCCCccccCC
Q 009392 341 YPAKVPQTVDHNLLFTVGLGVNPCP--SCKAGNGSRVVASINNVTFVMPTIALLQAHFFNISGVFTTDFPGNPPHTYNFT 418 (535)
Q Consensus 341 ~p~~~p~~~~~~~~l~~~~~~~~~~--~~~~~~g~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~ 418 (535)
+|..+|..+++++.+.+.++..... .+...++..+.|++|+++|..|++|+|.+.+.++++.+..++++.+|++|++.
T Consensus 321 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~ 400 (539)
T TIGR03389 321 YPANVPVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYT 400 (539)
T ss_pred CCCCCCCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCC
Confidence 4444555567777766654432110 01122455788999999999899898888777666777777888888888776
Q ss_pred CCC--CCCccCCCceeEEeeCCCEEEEEEecCCCCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCCccceEE
Q 009392 419 GTP--KNLQTSNGTKAYRLAYNSTVQLILQDTGIIAPENHPVHLHGFNFFAVGKGLGNFNPKKDPKKFNLVDPVERNTIG 496 (535)
Q Consensus 419 ~~~--~~~~~~~~~~~~~v~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~RDTv~ 496 (535)
+.+ .++..+.+++++.++.|++|||+|+|.+.+....||||||||+||||++|.|.|++.+....+|+.||++|||+.
T Consensus 401 ~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~ 480 (539)
T TIGR03389 401 GTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVG 480 (539)
T ss_pred CCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEE
Confidence 652 233345578899999999999999997533455899999999999999999999876555578999999999999
Q ss_pred eCCCCEEEECCCCCCCCCCeeeec------cCceeeee
Q 009392 497 VPSGGWVAIRXXXXXXXXAQIIQE------YGLCIAIW 528 (535)
Q Consensus 497 vp~~g~~virf~adnPG~w~~HCH------~gm~~~~~ 528 (535)
||++||++|||++||||+|+|||| .||+..|.
T Consensus 481 vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~ 518 (539)
T TIGR03389 481 VPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFL 518 (539)
T ss_pred cCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEE
Confidence 999999999999999999999999 67777653
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=3.1e-105 Score=847.74 Aligned_cols=497 Identities=29% Similarity=0.449 Sum_probs=395.0
Q ss_pred HHHHHHHHHhcc----cccceeEEEEEEEEEEeeeccC--CceeEEEECCCCCCcEEEEecCCEEEEEEEECCCCCceEE
Q 009392 6 RLLLLVACLFPA----LVECRVRHYKFNVVMKNSTKLC--SSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVKYNVTIH 79 (535)
Q Consensus 6 ~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~g--~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~~~t~iH 79 (535)
.+|||++.|..+ -|++.+|+|+|+|++..+++|| ..+++++||||+|||+|++++||+|+|+|+|+|+++|+||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIH 85 (596)
T PLN00044 6 FLLLLAAALALAPAPAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLT 85 (596)
T ss_pred HHHHHHHHHhcCCCccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEE
Confidence 345555555332 2367899999999999999999 4568999999999999999999999999999999999999
Q ss_pred eCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChhhhh-cccEEEEEEeCCCCCCCCCCCCC-ceE
Q 009392 80 WHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPH-KEV 157 (535)
Q Consensus 80 ~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~-~e~ 157 (535)
|||++|..++|+|||++ |||||+||++|+|+|++++|+||||||+|...|+ +||+|+|||++++....|+...+ +|.
T Consensus 86 WHGl~q~~t~w~DGv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~ 164 (596)
T PLN00044 86 WHGVQQRKSAWQDGVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDI 164 (596)
T ss_pred ECCccCCCCccccCCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccce
Confidence 99999999999999998 9999999999999999966999999999999999 99999999999876666665444 799
Q ss_pred EEEEEeeccCChHHHHHHHHhCCCCCCCCceEEEcCccCCCCCCC----CCCceeEEEeCCCEEEEEEEEcCCCceEEEE
Q 009392 158 VVVLAEWWKSDTEAVINQALQSGLAPNVSDSHTINGQPGPISSCS----SQGGFTLPVDSGKTYMLRIINAALNEELFFK 233 (535)
Q Consensus 158 ~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~----~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~ 233 (535)
+++++||++.+...+ ......|..+..+++.+|||++...++|+ ....+.++|++||+|||||||++....+.|+
T Consensus 165 ~i~l~DW~~~~~~~~-~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fs 243 (596)
T PLN00044 165 TLFIADWYARDHRAL-RRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFR 243 (596)
T ss_pred EEEecccccCCHHHH-HHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEE
Confidence 999999999886654 33444554455689999999965445554 2344689999999999999999999999999
Q ss_pred EcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCc-eeEEEeecC-CCCCcccCCCceEEEEEEcCCCCCCC
Q 009392 234 IAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSG-KYLVAASPF-MDAPIAVDNVTATATLHYSGTLASSA 311 (535)
Q Consensus 234 i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g-~y~i~~~~~-~~~~~~~~~~~~~ail~Y~~~~~~~~ 311 (535)
|+||+|+|||+||.+++|+.++.|.|++||||||+|+++++++ +|||++... ..+ ..+++..+.|||+|.++.....
T Consensus 244 IdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~-~~~~~~~~~AIl~Y~~~~~~~~ 322 (596)
T PLN00044 244 IQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDA-AVVDKLTGVAILHYSNSQGPAS 322 (596)
T ss_pred ECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccC-ccccCcceeEEEEECCCCCCCC
Confidence 9999999999999999999999999999999999999999765 899998652 222 2245677899999998654222
Q ss_pred CCCCCCCC-CCCcccccccccccccccCCCCCCCCCCccceEEEEEeecCcC-CCCCccCCCCCeeEEEEcCcccccChh
Q 009392 312 TTLTSTPP-KNGTAIANKFIDSLRSLNSKKYPAKVPQTVDHNLLFTVGLGVN-PCPSCKAGNGSRVVASINNVTFVMPTI 389 (535)
Q Consensus 312 ~~~~~~p~-~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~l~~~~~~~-~~~~~~~~~g~~~~~~iN~~~~~~p~~ 389 (535)
...|..|. .+++....++...++.+..++.+...|...+....++++.... .+ .+......++.|+|||.+|..|+.
T Consensus 323 ~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~s~Nnvsf~~p~~ 401 (596)
T PLN00044 323 GPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQS-MAPELIDGKLRATLNEISYIAPST 401 (596)
T ss_pred CCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeecc-ccccccCCeEEEEECcccCCCCCC
Confidence 11344443 4555443334445554433322222333334333343332110 01 000001126789999999999999
Q ss_pred hHHHhhhcccCCccccCCCCCCCccccCCCCCCCCccCCCceeEEeeCCCEEEEEEecCCCCCCCCCCeeecCCCeEEEe
Q 009392 390 ALLQAHFFNISGVFTTDFPGNPPHTYNFTGTPKNLQTSNGTKAYRLAYNSTVQLILQDTGIIAPENHPVHLHGFNFFAVG 469 (535)
Q Consensus 390 ~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~ 469 (535)
|+|.+++.+.+|++.+++|+.||... ....+.++.+++|++|||+|+|.. ...||||||||+|+||+
T Consensus 402 p~L~a~~~~~~gv~~~~fp~~pp~~~----------~~~~t~v~~~~~n~~VeiV~qn~~---~~~HP~HLHGh~F~Vvg 468 (596)
T PLN00044 402 PLMLAQIFNVPGVFKLDFPNHPMNRL----------PKLDTSIINGTYKGFMEIIFQNNA---TNVQSYHLDGYAFFVVG 468 (596)
T ss_pred cchhhhhccCCCcccCCCCCCCCccc----------cccCceEEEcCCCCEEEEEEeCCC---CCCCCeeEcCccEEEEe
Confidence 99988887778999888988776321 123578899999999999999964 46899999999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEECCCCCCCCCCeeeec
Q 009392 470 KGLGNFNPKKDPKKFNLVDPVERNTIGVPSGGWVAIRXXXXXXXXAQIIQE 520 (535)
Q Consensus 470 ~g~g~~~~~~~~~~~n~~~p~~RDTv~vp~~g~~virf~adnPG~w~~HCH 520 (535)
+|.|.|++. +...+|++||++||||.||++||++|||++||||+|+||||
T Consensus 469 ~G~G~~~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH 518 (596)
T PLN00044 469 MDYGLWTDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVE 518 (596)
T ss_pred ecCCCCCCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhcc
Confidence 999999965 35689999999999999999999999999999999999999
No 3
>PLN02991 oxidoreductase
Probab=100.00 E-value=8.1e-104 Score=832.74 Aligned_cols=473 Identities=27% Similarity=0.486 Sum_probs=376.8
Q ss_pred HHHHHHHHhcccccceeEEEEEEEEEEeeeccCCceeEEEECCCCCCcEEEEecCCEEEEEEEECCCCCceEEeCCcccC
Q 009392 7 LLLLVACLFPALVECRVRHYKFNVVMKNSTKLCSSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQL 86 (535)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~ 86 (535)
+|+|.-|+...++.+++++|+|+|++..+++||+++.+++||||+|||+|++++||+|+|+|+|+|+++|+|||||++|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~ 91 (543)
T PLN02991 12 ILGLLFLISFVAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNW 91 (543)
T ss_pred HHHHHHHHhhhhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccC
Confidence 33443444444566799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChhhhh-cccEEEEEEeCCCCCCCCCCCCCceEEEEEEeec
Q 009392 87 RTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVVVVLAEWW 165 (535)
Q Consensus 87 ~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~ 165 (535)
+++|+||+|+ |||||+||++|+|+|++++|+||||||+|.+.|+ +||+|+|||++++..+.|+..+++|.+++++||+
T Consensus 92 ~~~~~DGv~~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~ 170 (543)
T PLN02991 92 RNSYQDGVYG-TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWY 170 (543)
T ss_pred CCccccCCCC-CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEeccee
Confidence 9999999998 9999999999999999966999999999999988 8999999999987666666667889999999999
Q ss_pred cCChHHHHHHHHhCCCCCCCCceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeC
Q 009392 166 KSDTEAVINQALQSGLAPNVSDSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVD 245 (535)
Q Consensus 166 ~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~D 245 (535)
++....+... ...++.+..+|++||||+.. .+.++|++||+|||||||+|....+.|+|+||+|+|||+|
T Consensus 171 ~~~~~~~~~~-~~~~~~~~~~d~~liNG~~~---------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~D 240 (543)
T PLN02991 171 KTNHKDLRAQ-LDNGGKLPLPDGILINGRGS---------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVE 240 (543)
T ss_pred cCCHHHHHHH-hhcCCCCCCCCEEEEccCCC---------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeC
Confidence 9887665443 33454555789999999953 2689999999999999999999999999999999999999
Q ss_pred CcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCCCCCcccCCCceEEEEEEcCCCCCCCCCCCCCCCCCCccc
Q 009392 246 ATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFMDAPIAVDNVTATATLHYSGTLASSATTLTSTPPKNGTAI 325 (535)
Q Consensus 246 G~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~p~~~~~~~ 325 (535)
|.+++|..++++.|++||||||+|++++++|+|||++.+.... ......|||+|.++......+.|..|.......
T Consensus 241 G~~~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~----~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~ 316 (543)
T PLN02991 241 GTHTIQTPFSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTS----KILITTGVLHYSNSAGPVSGPIPDGPIQLSWSF 316 (543)
T ss_pred CccccceeeeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCC----CCcceEEEEEeCCCCCCCCCCCCCCCccccccc
Confidence 9999999999999999999999999999889999999863321 235679999999875422111222221111110
Q ss_pred --ccccccccccccCCCCCCCCCCc--------cceEEEEEeecCcCCCCCccCCCCCeeEEEEcCcccccChhhHHHhh
Q 009392 326 --ANKFIDSLRSLNSKKYPAKVPQT--------VDHNLLFTVGLGVNPCPSCKAGNGSRVVASINNVTFVMPTIALLQAH 395 (535)
Q Consensus 326 --~~~~~~~l~~l~~~~~p~~~p~~--------~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~~~l~~~ 395 (535)
.......|.+.. +..+|.. .++.+.+..+++. + ++ .+.|+|||.+|..|+.|+|.++
T Consensus 317 ~~~~~~~~~l~p~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~-----~---~g-~~~~~iN~~s~~~p~~p~L~~~ 383 (543)
T PLN02991 317 DQARAIKTNLTASG----PRPNPQGSYHYGKINITRTIRLANSAGN-----I---EG-KQRYAVNSASFYPADTPLKLAD 383 (543)
T ss_pred cchhhhhhcccCCC----CCCCCCccccccccccceeEEEeecccc-----c---Cc-eEEEEECCCccCCCCCChhhhh
Confidence 001112222211 1122222 1222222221111 0 23 5689999999999999999888
Q ss_pred hcccCCccccC-CCCCCCccccCCCCCCCCccCCCceeEEeeCCCEEEEEEecCCCCCCCCCCeeecCCCeEEEeecCCC
Q 009392 396 FFNISGVFTTD-FPGNPPHTYNFTGTPKNLQTSNGTKAYRLAYNSTVQLILQDTGIIAPENHPVHLHGFNFFAVGKGLGN 474 (535)
Q Consensus 396 ~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~ 474 (535)
+..++|++..+ +++.+|.. .....+.++.++.|++|||+|+|.. ...||||||||+||||++|.|.
T Consensus 384 ~~~~~g~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~ 450 (543)
T PLN02991 384 YFKIAGVYNPGSIPDQPTNG----------AIFPVTSVMQTDYKAFVEIVFENWE---DIVQTWHLDGYSFYVVGMELGK 450 (543)
T ss_pred hhcccCccccccccccCCCC----------ccccCCcEEEcCCCCEEEEEEeCCC---CCCCCeeeCCcceEEEEeCCCC
Confidence 87777877654 44443311 1122466889999999999999964 5699999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccceEEeCCCCEEEECCCCCCCCCCeeeecc
Q 009392 475 FNPKKDPKKFNLVDPVERNTIGVPSGGWVAIRXXXXXXXXAQIIQEY 521 (535)
Q Consensus 475 ~~~~~~~~~~n~~~p~~RDTv~vp~~g~~virf~adnPG~w~~HCH~ 521 (535)
|++. +...+|+.||++|||+.||++||++|||++||||+|+||||+
T Consensus 451 f~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi 496 (543)
T PLN02991 451 WSAA-SRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSEL 496 (543)
T ss_pred CCcc-cccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCc
Confidence 9876 456799999999999999999999999999999999999994
No 4
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=1.8e-103 Score=835.41 Aligned_cols=471 Identities=25% Similarity=0.473 Sum_probs=371.9
Q ss_pred ccceeEEEEEEEEEEeeeccCCceeEEEECCCCCCcEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcc
Q 009392 19 VECRVRHYKFNVVMKNSTKLCSSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYIT 98 (535)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~t 98 (535)
+.+++++|+|+|++...++||+.+++++||||+|||+|++++||+|+|+|+|+|+++|+|||||++|.+++|+||+|+ |
T Consensus 23 ~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~-T 101 (552)
T PLN02354 23 AEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPG-T 101 (552)
T ss_pred ccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcC-C
Confidence 356889999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cCcCCCCCeEEEEEEeCCCCcceeEecChhhhh-cccEEEEEEeCCCCCCCCCCCCCceEEEEEEeeccCChHHHHHHHH
Q 009392 99 QCPIQSGHSYVYNFTITGQRGTLLWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVVVVLAEWWKSDTEAVINQAL 177 (535)
Q Consensus 99 q~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 177 (535)
||||+||++|+|+|++.+++||||||||...|+ +||+|+|||++++..+.+++.+++|++++++||+++....+.. ..
T Consensus 102 QcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~-~~ 180 (552)
T PLN02354 102 NCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKK-FL 180 (552)
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHH-HH
Confidence 999999999999999856899999999999998 9999999999987666667667889999999999988666443 34
Q ss_pred hCCCCCCCCceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceE
Q 009392 178 QSGLAPNVSDSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNI 257 (535)
Q Consensus 178 ~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l 257 (535)
..|..+..++++||||+.+..+. ...+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|..++.|
T Consensus 181 ~~g~~~~~~d~~liNG~~~~~~~---~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l 257 (552)
T PLN02354 181 DSGRTLGRPDGVLINGKSGKGDG---KDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSL 257 (552)
T ss_pred hcCCCCCCCCeEEEeCCcCCCCC---CCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEE
Confidence 44544456799999999753221 234789999999999999999999999999999999999999999999999999
Q ss_pred EeCCCceEEEEEEeCCCCceeEEEeecCCCCCcccCCCceEEEEEEcCCCCCCCCCCCCCCCCCCccccc----cccccc
Q 009392 258 VIAPGQTTNVLLSADKTSGKYLVAASPFMDAPIAVDNVTATATLHYSGTLASSATTLTSTPPKNGTAIAN----KFIDSL 333 (535)
Q Consensus 258 ~l~pGeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~l 333 (535)
.|++||||||+|++++++|+|||++.....+ .+....|||+|.++.....+..|..+. +..... .+...+
T Consensus 258 ~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~l 331 (552)
T PLN02354 258 DVHVGQCFSVLVTANQAPKDYYMVASTRFLK----KVLTTTGIIRYEGGKGPASPELPEAPV--GWAWSLNQFRSFRWNL 331 (552)
T ss_pred EEccCceEEEEEECCCCCCcEEEEEeccccC----CCccEEEEEEECCCCCCCCCCCCCCCc--ccccchhhhhhhhhcc
Confidence 9999999999999999889999998743222 345689999999865432222222111 110000 111112
Q ss_pred ccccCCCCCCCC----CCccceEEEEEeecCcCCCCCccCCCCCeeEEEEcCcccccChhhHHHhhhcccC-CccccC-C
Q 009392 334 RSLNSKKYPAKV----PQTVDHNLLFTVGLGVNPCPSCKAGNGSRVVASINNVTFVMPTIALLQAHFFNIS-GVFTTD-F 407 (535)
Q Consensus 334 ~~l~~~~~p~~~----p~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~~~l~~~~~~~~-~~~~~~-~ 407 (535)
.+....+.+... ....++++.+..+... .++ .+.|++||++|..|+.|+|.+.+.++. |.++.+ +
T Consensus 332 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g-~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~ 402 (552)
T PLN02354 332 TASAARPNPQGSYHYGKINITRTIKLVNSASK--------VDG-KLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTI 402 (552)
T ss_pred cccccCCCCCCccccccccccceEEEeccccc--------CCc-eEEEEECCccCCCCCCChHHhhhhcccCCccccCcc
Confidence 211111111000 0112333333322111 023 567999999999999998887665443 555433 3
Q ss_pred CCCCCccccCCCCCCCCccCCCceeEEeeCCCEEEEEEecCCCCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCC
Q 009392 408 PGNPPHTYNFTGTPKNLQTSNGTKAYRLAYNSTVQLILQDTGIIAPENHPVHLHGFNFFAVGKGLGNFNPKKDPKKFNLV 487 (535)
Q Consensus 408 ~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~ 487 (535)
+..+|..++ ..+.+++++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++.. ...+|+.
T Consensus 403 ~~~pp~~~~--------~~~~~~~v~~~~~~~~VeiVi~n~~---~~~HP~HLHGh~F~Vlg~G~G~~~~~~-~~~~nl~ 470 (552)
T PLN02354 403 KDNPPAKIT--------KIKIQPNVLNITFRTFVEIIFENHE---KSMQSWHLDGYSFFAVAVEPGTWTPEK-RKNYNLL 470 (552)
T ss_pred ccCCccccC--------ccccCCeeEEcCCCCEEEEEEeCCC---CCCCCCcCCCccEEEEeecCCCCCccc-cccCCcC
Confidence 444443211 1134567889999999999999964 568999999999999999999998753 5678999
Q ss_pred CCCccceEEeCCCCEEEECCCCCCCCCCeeeecc
Q 009392 488 DPVERNTIGVPSGGWVAIRXXXXXXXXAQIIQEY 521 (535)
Q Consensus 488 ~p~~RDTv~vp~~g~~virf~adnPG~w~~HCH~ 521 (535)
||++|||+.||++||++|||++||||+|+||||+
T Consensus 471 nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi 504 (552)
T PLN02354 471 DAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSEN 504 (552)
T ss_pred CCCccceEEeCCCCeEEEEEEecCCeEEeeeccc
Confidence 9999999999999999999999999999999996
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=4.7e-103 Score=828.32 Aligned_cols=481 Identities=26% Similarity=0.430 Sum_probs=382.4
Q ss_pred ccceeEEEEEEEEEEeeeccCCceeEEEECCCCCCcEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcc
Q 009392 19 VECRVRHYKFNVVMKNSTKLCSSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYIT 98 (535)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~t 98 (535)
.+..+++|+|+|++...++||+.+.+++||||+|||+|++++||+|+|+|+|+|+++|+|||||++|.+++|+||+++ |
T Consensus 12 ~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~-t 90 (536)
T PLN02792 12 KADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG-T 90 (536)
T ss_pred hcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-C
Confidence 346778999999999999999999999999999999999999999999999999999999999999999999999988 9
Q ss_pred cCcCCCCCeEEEEEEeCCCCcceeEecChhhhh-cccEEEEEEeCCCCCCCCCCCCCceEEEEEEeeccCChHHHHHHHH
Q 009392 99 QCPIQSGHSYVYNFTITGQRGTLLWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVVVVLAEWWKSDTEAVINQAL 177 (535)
Q Consensus 99 q~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 177 (535)
||||+||++|+|+|++++|+||||||+|...|+ +||+|+|||++++....+++.+++|.+++++||++++...+. ...
T Consensus 91 qcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~-~~~ 169 (536)
T PLN02792 91 TCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLK-KIL 169 (536)
T ss_pred cCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHH-HHh
Confidence 999999999999999966899999999999998 999999999886655556666788999999999998866543 333
Q ss_pred hCCCC-CCCCceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEece
Q 009392 178 QSGLA-PNVSDSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDN 256 (535)
Q Consensus 178 ~~g~~-~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~ 256 (535)
..|.. +..+|++||||+... ..+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|..+++
T Consensus 170 ~~g~~~~~~~d~~liNG~~~~-------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~ 242 (536)
T PLN02792 170 DGGRKLPLMPDGVMINGQGVS-------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTS 242 (536)
T ss_pred hccCcCCCCCCEEEEeccCCC-------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeE
Confidence 44433 347899999999641 1378999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCceEEEEEEeCCCCceeEEEeecCCCCCcccCCCceEEEEEEcCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 009392 257 IVIAPGQTTNVLLSADKTSGKYLVAASPFMDAPIAVDNVTATATLHYSGTLASSATTLTSTPPKNGTAIANKFIDSLRSL 336 (535)
Q Consensus 257 l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l 336 (535)
|.|++||||||+|++++++|+|||++.+...+ .+..+.|||+|.++....+ ..+..|..++......+...++.+
T Consensus 243 l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~ 317 (536)
T PLN02792 243 LDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIA----AKVLVSSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQSIRTN 317 (536)
T ss_pred EEEccCceEEEEEEcCCCCceEEEEEEeccCC----CCCceEEEEEECCCCCCCC-CCCCCCCcCCccccccchhhhhhc
Confidence 99999999999999999889999999864322 2357889999998654321 122333344433332222223333
Q ss_pred cCCCCCCCCCCccceEEEEEeecCcC-CCCCccCCCCCeeEEEEcCcccccChhhHHHhhhcccCCccccC-CCCCCCcc
Q 009392 337 NSKKYPAKVPQTVDHNLLFTVGLGVN-PCPSCKAGNGSRVVASINNVTFVMPTIALLQAHFFNISGVFTTD-FPGNPPHT 414 (535)
Q Consensus 337 ~~~~~p~~~p~~~~~~~~l~~~~~~~-~~~~~~~~~g~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~-~~~~~p~~ 414 (535)
..++.|..+|...++...++++.... .+ .. ......+.|++||.+|..|++|+|.+++.+++|++..+ ++..||..
T Consensus 318 l~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~ 395 (536)
T PLN02792 318 LTASGPRTNPQGSYHYGKMKISRTLILES-SA-ALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRG 395 (536)
T ss_pred cCCCCCCCCCCcccccceeccceeEEecc-cc-cccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCccc
Confidence 23222333443322221111111100 00 00 00112578999999999999999988877777777653 77766643
Q ss_pred ccCCCCCCCCccCCCceeEEeeCCCEEEEEEecCCCCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCCccce
Q 009392 415 YNFTGTPKNLQTSNGTKAYRLAYNSTVQLILQDTGIIAPENHPVHLHGFNFFAVGKGLGNFNPKKDPKKFNLVDPVERNT 494 (535)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~RDT 494 (535)
++. ..++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++. +...+|++||++|||
T Consensus 396 ~~~---------~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nP~~RdT 462 (536)
T PLN02792 396 GGM---------RLDTSVMGAHHNAFLEIIFQNRE---KIVQSYHLDGYNFWVVGINKGIWSRA-SRREYNLKDAISRST 462 (536)
T ss_pred CCC---------ccCceEEEcCCCCEEEEEEECCC---CCCCCeeeCCCceEEEeecCCCCCcc-cccccCcCCCCccce
Confidence 221 13577889999999999999964 55899999999999999999999874 356799999999999
Q ss_pred EEeCCCCEEEECCCCCCCCCCeeeec------cCceeeee
Q 009392 495 IGVPSGGWVAIRXXXXXXXXAQIIQE------YGLCIAIW 528 (535)
Q Consensus 495 v~vp~~g~~virf~adnPG~w~~HCH------~gm~~~~~ 528 (535)
|.||++||++|||++||||+|+|||| .||..++-
T Consensus 463 v~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~ 502 (536)
T PLN02792 463 TQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLR 502 (536)
T ss_pred EEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEE
Confidence 99999999999999999999999999 67777663
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=3.2e-102 Score=822.24 Aligned_cols=473 Identities=26% Similarity=0.453 Sum_probs=370.9
Q ss_pred ccceeEEEEEEEEEEeeeccCCceeEEEECCCCCCcEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcc
Q 009392 19 VECRVRHYKFNVVMKNSTKLCSSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYIT 98 (535)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~t 98 (535)
+.+++|+|+|+|++...++||+.+++++||||+|||+||+++||+|+|+|+|+|+++|+|||||++|.+++|+||||+ |
T Consensus 22 ~~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~g-t 100 (545)
T PLN02168 22 AFAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRG-T 100 (545)
T ss_pred ccccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCC-C
Confidence 347899999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cCcCCCCCeEEEEEEeCCCCcceeEecChhhhh-cccEEEEEEeCCCCCCCCCCCCCceEEEEEEeeccCChHHHHHHHH
Q 009392 99 QCPIQSGHSYVYNFTITGQRGTLLWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVVVVLAEWWKSDTEAVINQAL 177 (535)
Q Consensus 99 q~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 177 (535)
||||+||++|+|+|++++++||||||||.+.|+ +||+|+|||+++++...|++.+++|++|+++||++.+...+.. ..
T Consensus 101 QcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~-~~ 179 (545)
T PLN02168 101 NCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRA-SL 179 (545)
T ss_pred cCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHh-hh
Confidence 999999999999999956899999999999998 9999999999987766666677899999999999987554333 23
Q ss_pred hCCCCCCCCceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceE
Q 009392 178 QSGLAPNVSDSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNI 257 (535)
Q Consensus 178 ~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l 257 (535)
..|.....++++||||+.. ..+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|..+++|
T Consensus 180 ~~g~~~~~~d~~liNG~~~--------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l 251 (545)
T PLN02168 180 DNGHSLPNPDGILFNGRGP--------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSL 251 (545)
T ss_pred hcCCCCCCCCEEEEeccCC--------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEE
Confidence 3343344679999999963 12689999999999999999999999999999999999999999999999999
Q ss_pred EeCCCceEEEEEEeCCCC-c---eeEEEeecCCCCCcccCCCceEEEEEEcCCCCCCCCCCCCCCCCCCccccccccccc
Q 009392 258 VIAPGQTTNVLLSADKTS-G---KYLVAASPFMDAPIAVDNVTATATLHYSGTLASSATTLTSTPPKNGTAIANKFIDSL 333 (535)
Q Consensus 258 ~l~pGeR~dv~v~~~~~~-g---~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l 333 (535)
.|++||||||+|++++++ | +|||++.+...+ ....+.|||+|.++......+.+..|..++.....+....+
T Consensus 252 ~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~ 327 (545)
T PLN02168 252 DIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD----AYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSI 327 (545)
T ss_pred EEcCCceEEEEEEcCCCCCCCcceEEEEEEecccC----CCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhh
Confidence 999999999999998654 4 899999864322 23568899999986543211223333333332222222222
Q ss_pred ccccCCCCCCCCCCc--------cceEEEEEeecCcCCCCCccCCCCCeeEEEEcCcccccChhhHHHhhhcccCCcccc
Q 009392 334 RSLNSKKYPAKVPQT--------VDHNLLFTVGLGVNPCPSCKAGNGSRVVASINNVTFVMPTIALLQAHFFNISGVFTT 405 (535)
Q Consensus 334 ~~l~~~~~p~~~p~~--------~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~ 405 (535)
+....+..+...|.. .++++.+.... . ..+| ...|++||.+|..|+.|+|.+++..+++.+..
T Consensus 328 ~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~------~~~g-~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~ 398 (545)
T PLN02168 328 RMDLNVGAARSNPQGSYHYGRINVTRTIILHNDV--M------LSSG-KLRYTINGVSFVYPGTPLKLVDHFQLNDTIIP 398 (545)
T ss_pred hhcCCCCCCCCCCcccccccccccceeEEecccc--c------ccCc-eEEEEECCCccCCCCCchhhhhhccccccccc
Confidence 211112111122221 12222221111 0 0122 56899999999999998887765554433332
Q ss_pred C-CCCCCCccccCCCCCCCCccCCCceeEEeeCCCEEEEEEecCCCCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCC
Q 009392 406 D-FPGNPPHTYNFTGTPKNLQTSNGTKAYRLAYNSTVQLILQDTGIIAPENHPVHLHGFNFFAVGKGLGNFNPKKDPKKF 484 (535)
Q Consensus 406 ~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~ 484 (535)
+ ++..+|. .....+++++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++.. ...+
T Consensus 399 ~~~~~~p~~----------~~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~g~g~~~~~~-~~~~ 464 (545)
T PLN02168 399 GMFPVYPSN----------KTPTLGTSVVDIHYKDFYHIVFQNPL---FSLESYHIDGYNFFVVGYGFGAWSESK-KAGY 464 (545)
T ss_pred CCCccCCCc----------CccccCceEEEecCCCEEEEEEeCCC---CCCCCeeeCCCceEEEECCCCCCCccc-cccC
Confidence 2 3433331 01112467889999999999999964 568999999999999999999998653 4578
Q ss_pred CCCCCCccceEEeCCCCEEEECCCCCCCCCCeeeecc------Cceeeee
Q 009392 485 NLVDPVERNTIGVPSGGWVAIRXXXXXXXXAQIIQEY------GLCIAIW 528 (535)
Q Consensus 485 n~~~p~~RDTv~vp~~g~~virf~adnPG~w~~HCH~------gm~~~~~ 528 (535)
|+.||++|||+.||++||++|||++||||+|+||||+ ||.+++-
T Consensus 465 Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~ 514 (545)
T PLN02168 465 NLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMR 514 (545)
T ss_pred CCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEE
Confidence 9999999999999999999999999999999999996 6666654
No 7
>PLN02835 oxidoreductase
Probab=100.00 E-value=4.5e-101 Score=816.13 Aligned_cols=471 Identities=26% Similarity=0.476 Sum_probs=371.2
Q ss_pred cccceeEEEEEEEEEEeeeccCCceeEEEECCCCCCcEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCc
Q 009392 18 LVECRVRHYKFNVVMKNSTKLCSSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYI 97 (535)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~ 97 (535)
.+.+++|+|+|+|++..+++||+++.+|+||||+|||+||+++||+|+|+|+|+|+++|+|||||++|.+++||||||+
T Consensus 24 ~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~- 102 (539)
T PLN02835 24 NGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLG- 102 (539)
T ss_pred hccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCcc-
Confidence 3456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCCCCCeEEEEEEeCCCCcceeEecChhhhh-cccEEEEEEeCCCCCCCCCCCCCceEEEEEEeeccCChHHHHHHH
Q 009392 98 TQCPIQSGHSYVYNFTITGQRGTLLWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVVVVLAEWWKSDTEAVINQA 176 (535)
Q Consensus 98 tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~ 176 (535)
|||||+||++|+|+|++.+++||||||||...|+ +||+|+|||+++...+.++..+++|++++++||++++...+...
T Consensus 103 tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~- 181 (539)
T PLN02835 103 TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQR- 181 (539)
T ss_pred CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHH-
Confidence 9999999999999999856899999999999998 99999999987655455666678999999999999987665433
Q ss_pred HhCCCCCCCCceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEece
Q 009392 177 LQSGLAPNVSDSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDN 256 (535)
Q Consensus 177 ~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~ 256 (535)
...|.....++++||||+.. +.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|..++.
T Consensus 182 ~~~g~~~~~~d~~liNG~~~----------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~ 251 (539)
T PLN02835 182 LDSGKVLPFPDGVLINGQTQ----------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDS 251 (539)
T ss_pred hhcCCCCCCCceEEEccccC----------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeE
Confidence 33454455789999999975 68999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCceEEEEEEeCCCCceeEEEeecCCCCCcccCCCceEEEEEEcCCCCCCCCCCCCCCCCCCccccc----ccccc
Q 009392 257 IVIAPGQTTNVLLSADKTSGKYLVAASPFMDAPIAVDNVTATATLHYSGTLASSATTLTSTPPKNGTAIAN----KFIDS 332 (535)
Q Consensus 257 l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~ 332 (535)
|.|++||||||+|++++++|+|||++.....+ .+....|||+|.++........+..|.. +..... .+...
T Consensus 252 l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~~~~p~~p~~-~~~~~~~~~~~~~~~ 326 (539)
T PLN02835 252 LDVHVGQSVAVLVTLNQSPKDYYIVASTRFTR----QILTATAVLHYSNSRTPASGPLPALPSG-ELHWSMRQARTYRWN 326 (539)
T ss_pred EEECcCceEEEEEEcCCCCCcEEEEEEccccC----CCcceEEEEEECCCCCCCCCCCCCCCcc-ccccccchhhccccc
Confidence 99999999999999998889999998643222 2356899999998643222112222211 100000 00011
Q ss_pred cccccCCCCCCC---C-CCccceEEEEEeecCcCCCCCccCCCCCeeEEEEcCcccccChhhHHHhhhcccCCccccCC-
Q 009392 333 LRSLNSKKYPAK---V-PQTVDHNLLFTVGLGVNPCPSCKAGNGSRVVASINNVTFVMPTIALLQAHFFNISGVFTTDF- 407 (535)
Q Consensus 333 l~~l~~~~~p~~---~-p~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~- 407 (535)
+.+....+.+.. . ....++++.+...... .+| ...|++||++|..|+.|+|.+++.+.++.++.+.
T Consensus 327 l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g-~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~ 397 (539)
T PLN02835 327 LTASAARPNPQGSFHYGKITPTKTIVLANSAPL--------ING-KQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSI 397 (539)
T ss_pred cCccccCCCCCccccccccCCCceEEEeccccc--------cCC-eEEEEECCcccCCCCCChhhhhhhcCCCccccCcc
Confidence 111111111100 0 0112333333321111 123 4679999999998889988776665556655331
Q ss_pred CCCCCccccCCCCCCCCccCCCceeEEeeCCCEEEEEEecCCCCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCC
Q 009392 408 PGNPPHTYNFTGTPKNLQTSNGTKAYRLAYNSTVQLILQDTGIIAPENHPVHLHGFNFFAVGKGLGNFNPKKDPKKFNLV 487 (535)
Q Consensus 408 ~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~ 487 (535)
+.. +.+...+.+++++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++.. ...+|+.
T Consensus 398 ~~~----------~~~~~~~~~t~~~~~~~~~~Veivi~N~~---~~~HP~HLHGh~F~Vlg~G~g~~~~~~-~~~~nl~ 463 (539)
T PLN02835 398 QSL----------PSGGPAFVATSVMQTSLHDFLEVVFQNNE---KTMQSWHLDGYDFWVVGYGSGQWTPAK-RSLYNLV 463 (539)
T ss_pred ccC----------CCCCccccCCeEEEcCCCCEEEEEEECCC---CCCCCCCCCCccEEEEeccCCCCCccc-ccccCCC
Confidence 111 11212344688899999999999999964 568999999999999999999998653 4567899
Q ss_pred CCCccceEEeCCCCEEEECCCCCCCCCCeeeec------cCceeeee
Q 009392 488 DPVERNTIGVPSGGWVAIRXXXXXXXXAQIIQE------YGLCIAIW 528 (535)
Q Consensus 488 ~p~~RDTv~vp~~g~~virf~adnPG~w~~HCH------~gm~~~~~ 528 (535)
||++||||.||++||++|||+|||||+|+|||| .||+..+-
T Consensus 464 nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~ 510 (539)
T PLN02835 464 DALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLR 510 (539)
T ss_pred CCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEE
Confidence 999999999999999999999999999999999 67877763
No 8
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-99 Score=794.50 Aligned_cols=507 Identities=46% Similarity=0.791 Sum_probs=445.0
Q ss_pred HhcccccceeEEEEEEEEEEeeeccCCceeEEEECCCCCCcEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCC
Q 009392 14 LFPALVECRVRHYKFNVVMKNSTKLCSSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADG 93 (535)
Q Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DG 93 (535)
+..+.++++++.|+|++++..++++|.++.++++||++|||+|+|++||+|+|+|.|.++++++|||||++|..++|+||
T Consensus 19 ~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG 98 (563)
T KOG1263|consen 19 VFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDG 98 (563)
T ss_pred HHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccC
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCcCCCCCeEEEEEEeCCCCcceeEecChhhhh-cccEEEEEEeCCCCCCCCCCCCCceEEEEEEeeccC-ChHH
Q 009392 94 PAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVVVVLAEWWKS-DTEA 171 (535)
Q Consensus 94 vp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~-~~~~ 171 (535)
+.+|||||+||++|+|+|++++|.||||||+|...|+ +|++|+|||.++...++|++++++|++|+++||+.+ +...
T Consensus 99 -~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~ 177 (563)
T KOG1263|consen 99 -VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKN 177 (563)
T ss_pred -CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHH
Confidence 8999999999999999999977999999999999999 899999999999988888989999999999999995 7777
Q ss_pred HHHHHHhCCCCCCCCceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccce
Q 009392 172 VINQALQSGLAPNVSDSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKP 251 (535)
Q Consensus 172 ~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P 251 (535)
+.......++.+..+|..+|||+.+..++| .++++|++||+|||||+|+|....+.|+|++|+|+||++||.+++|
T Consensus 178 l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p 253 (563)
T KOG1263|consen 178 LKNFLDRTGALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKP 253 (563)
T ss_pred HHHhhccCCCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEee
Confidence 777777677767669999999999988998 5899999999999999999999999999999999999999999999
Q ss_pred eEeceEEeCCCceEEEEEEeCCCCceeEEEeecCCCCCcccCCCceEEEEEEcCCCCCCC---CCCCCCCCCCCcccccc
Q 009392 252 FKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFMDAPIAVDNVTATATLHYSGTLASSA---TTLTSTPPKNGTAIANK 328 (535)
Q Consensus 252 ~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~---~~~~~~p~~~~~~~~~~ 328 (535)
..+++|.|.||||+||+|++++.+++|+|.+.++.++.....+....|+|+|.++..... +..+..|..++...+..
T Consensus 254 ~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~ 333 (563)
T KOG1263|consen 254 FTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTY 333 (563)
T ss_pred eeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhh
Confidence 999999999999999999999999999999998766532111678999999998433221 22234555566666666
Q ss_pred cccccccccCCCCCCCCCCccceEEEEEeecCcCCCCCccCCCCCeeEEEEcCcccccChhh-HHHhhhcccCCccccCC
Q 009392 329 FIDSLRSLNSKKYPAKVPQTVDHNLLFTVGLGVNPCPSCKAGNGSRVVASINNVTFVMPTIA-LLQAHFFNISGVFTTDF 407 (535)
Q Consensus 329 ~~~~l~~l~~~~~p~~~p~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~~-~l~~~~~~~~~~~~~~~ 407 (535)
+...++.+....++..+|...+....++++.+...+++.. +.+.+..++||+.+|..|+.| +|..++..+++.+..++
T Consensus 334 ~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~ 412 (563)
T KOG1263|consen 334 QARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN-KNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDF 412 (563)
T ss_pred hhhcccccccccCcccCCCccccccceeeeccEEeccCCC-CCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCcc
Confidence 7777888877777777888888888888877776665443 345578899999999999875 56677777778888899
Q ss_pred CCCCCccccCCCCCCCCccCCCceeEEeeCCCEEEEEEecCCCCCCCCCCeeecCCCeEEEeecCCCCCCCCCC-CCCCC
Q 009392 408 PGNPPHTYNFTGTPKNLQTSNGTKAYRLAYNSTVQLILQDTGIIAPENHPVHLHGFNFFAVGKGLGNFNPKKDP-KKFNL 486 (535)
Q Consensus 408 ~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~-~~~n~ 486 (535)
|..|+..|++++ ++.+++++.+++|+.||+||+|.+......||||||||.|||+|.|.|+|++.++. ..+|+
T Consensus 413 p~~P~~~~~~~~------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl 486 (563)
T KOG1263|consen 413 PDKPPIKFDYTG------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNL 486 (563)
T ss_pred CCCCccccCCcc------ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhccc
Confidence 999988887765 36789999999999999999999866677899999999999999999999995455 78999
Q ss_pred CCCCccceEEeCCCCEEEECCCCCCCCCCeeeec------cCceeeeeeccc
Q 009392 487 VDPVERNTIGVPSGGWVAIRXXXXXXXXAQIIQE------YGLCIAIWKYTQ 532 (535)
Q Consensus 487 ~~p~~RDTv~vp~~g~~virf~adnPG~w~~HCH------~gm~~~~~~~~~ 532 (535)
.+|+.||||.||++||++|||.|||||+|+|||| .||...+=....
T Consensus 487 ~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~ 538 (563)
T KOG1263|consen 487 VDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNG 538 (563)
T ss_pred CCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCC
Confidence 9999999999999999999999999999999999 777776655443
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1.2e-97 Score=796.54 Aligned_cols=504 Identities=29% Similarity=0.490 Sum_probs=374.8
Q ss_pred hhHHHHHHHHHHHhcccccceeEEEEEEEEEEeeeccCCceeEEEECCCCCCcEEEEecCCEEEEEEEECCC-CCceEEe
Q 009392 2 DSWVRLLLLVACLFPALVECRVRHYKFNVVMKNSTKLCSSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVK-YNVTIHW 80 (535)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~-~~t~iH~ 80 (535)
.-||++-++ +.|... +.+++|+|+|++++..+++||+++++++||||+|||+||+++||+|+|+|+|+|+ ++|+|||
T Consensus 4 ~~~~~~~~~-~~~~~~-~~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHw 81 (574)
T PLN02191 4 IVWWIVTVV-AVLTHT-ASAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHW 81 (574)
T ss_pred eehhHHHHH-HHHHHh-hccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEC
Confidence 345555444 444333 2368999999999999999999999999999999999999999999999999997 7899999
Q ss_pred CCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChhhhh-cccEEEEEEeCCCCCCCCCCCCCceEEE
Q 009392 81 HGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVVV 159 (535)
Q Consensus 81 HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l 159 (535)
||+++.+++|+||+|++|||||+||++|+|+|++ .++||||||||...|+ +||+|+|||+++.+...++ .+++|++|
T Consensus 82 HGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l 159 (574)
T PLN02191 82 HGIRQKGSPWADGAAGVTQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNL 159 (574)
T ss_pred CCCCCCCCccccCCCccccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEE
Confidence 9999999999999999999999999999999999 7999999999999998 9999999999765433333 46889999
Q ss_pred EEEeeccCChHHHHHHHHhCC-CCCCCCceEEEcCccCCCCCCCC--------------------CCceeEEEeCCCEEE
Q 009392 160 VLAEWWKSDTEAVINQALQSG-LAPNVSDSHTINGQPGPISSCSS--------------------QGGFTLPVDSGKTYM 218 (535)
Q Consensus 160 ~~~d~~~~~~~~~~~~~~~~g-~~~~~~~~~liNG~~~~~~~~~~--------------------~~~~~~~v~~G~~~r 218 (535)
+++||++.............. ....+++++||||+.. +.|.. ....+++|++||+||
T Consensus 160 ~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yR 237 (574)
T PLN02191 160 LLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQ--FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYR 237 (574)
T ss_pred eeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCC--CCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEE
Confidence 999999986543322221111 1124578999999864 34421 122369999999999
Q ss_pred EEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCC-ceeEEEeecCCCCCcccCCCce
Q 009392 219 LRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTS-GKYLVAASPFMDAPIAVDNVTA 297 (535)
Q Consensus 219 lRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~-g~y~i~~~~~~~~~~~~~~~~~ 297 (535)
|||||+|+...+.|+|++|+|+|||+||.+++|+.+++|.|++||||||+|++++++ ++||||+.....+. .....
T Consensus 238 lRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~---~~~~~ 314 (574)
T PLN02191 238 IRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP---NTTQA 314 (574)
T ss_pred EEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC---CCCCc
Confidence 999999999999999999999999999999999999999999999999999999876 48999997543221 22345
Q ss_pred EEEEEEcCCCCCCCCC--CCCCCCCCCcccccccccccccccCCCCCCCCCCc-cceEEEEEeecCcCCCCCccCCCCCe
Q 009392 298 TATLHYSGTLASSATT--LTSTPPKNGTAIANKFIDSLRSLNSKKYPAKVPQT-VDHNLLFTVGLGVNPCPSCKAGNGSR 374 (535)
Q Consensus 298 ~ail~Y~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~g~~ 374 (535)
.|||+|.+......+. .+..|.+++......+...+ +.....+ ..|.. .+.++.+..... ....
T Consensus 315 ~ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~-~~p~~~~~~~~~~~~~~~----------~~~~ 381 (574)
T PLN02191 315 LTILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKI--FSAMGSP-SPPKKYRKRLILLNTQNL----------IDGY 381 (574)
T ss_pred eEEEEECCCCCCCCCCCCCCCCCcccccchhhcccccc--cccccCC-CCCCcccceEEEecccce----------eCCe
Confidence 7999998765432111 11223333321111111111 1110011 12211 244443332110 1124
Q ss_pred eEEEEcCcccccChhhHHHhhhcccCCccccCCCCCC-CccccCCCCCCCCccCCCceeEEeeCCCEEEEEEecCCCC--
Q 009392 375 VVASINNVTFVMPTIALLQAHFFNISGVFTTDFPGNP-PHTYNFTGTPKNLQTSNGTKAYRLAYNSTVQLILQDTGII-- 451 (535)
Q Consensus 375 ~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vl~N~~~~-- 451 (535)
..|++||.+|..|+.|+|.+.+.+..+.+..+.+... +..|+..+...-...+.+++++.++.|++|||+|+|....
T Consensus 382 ~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~ 461 (574)
T PLN02191 382 TKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKG 461 (574)
T ss_pred EEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccC
Confidence 5799999999989888887766555555443333211 1122211111001123467789999999999999996411
Q ss_pred -CCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEECCCCCCCCCCeeeec------cCce
Q 009392 452 -APENHPVHLHGFNFFAVGKGLGNFNPKKDPKKFNLVDPVERNTIGVPSGGWVAIRXXXXXXXXAQIIQE------YGLC 524 (535)
Q Consensus 452 -~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~RDTv~vp~~g~~virf~adnPG~w~~HCH------~gm~ 524 (535)
....||||||||+||||++|.|.|++..+...+|+.||++|||+.||++||++|||++||||+|+|||| .||.
T Consensus 462 ~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~ 541 (574)
T PLN02191 462 VVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMG 541 (574)
T ss_pred CCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCE
Confidence 257899999999999999999999975545678999999999999999999999999999999999999 5666
Q ss_pred eee
Q 009392 525 IAI 527 (535)
Q Consensus 525 ~~~ 527 (535)
..|
T Consensus 542 ~~~ 544 (574)
T PLN02191 542 VVF 544 (574)
T ss_pred EEE
Confidence 555
No 10
>PLN02604 oxidoreductase
Probab=100.00 E-value=6.6e-97 Score=792.88 Aligned_cols=503 Identities=33% Similarity=0.532 Sum_probs=387.4
Q ss_pred HHHHHHHHHHhcccccceeEEEEEEEEEEeeeccCCceeEEEECCCCCCcEEEEecCCEEEEEEEECC-CCCceEEeCCc
Q 009392 5 VRLLLLVACLFPALVECRVRHYKFNVVMKNSTKLCSSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHV-KYNVTIHWHGV 83 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l-~~~t~iH~HG~ 83 (535)
++||++++.+..+.+.+++|+|+|+|+++.+++||+.+.+|+|||++|||+|++++||+|+|+|+|++ .++++|||||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~ 85 (566)
T PLN02604 6 ALFFLLFSVLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGI 85 (566)
T ss_pred hHHHHHHHHHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCC
Confidence 67777777778888889999999999999999999999999999999999999999999999999998 58999999999
Q ss_pred ccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChhhhh-cccEEEEEEeCCCCCCCCCCCCCceEEEEEE
Q 009392 84 RQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVVVVLA 162 (535)
Q Consensus 84 ~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~ 162 (535)
++.+++|+||+++++||+|+||++++|+|++ +++||||||||...|+ +||+|+|||+++.+...++ ..+.|.+|+++
T Consensus 86 ~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~ 163 (566)
T PLN02604 86 RQIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILT 163 (566)
T ss_pred CCCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEee
Confidence 9999999999999999999999999999998 7999999999999998 9999999999987555555 36788999999
Q ss_pred eeccCChHHHHHHHHhCC-CCCCCCceEEEcCccCCCCCCCC-----------------CCceeEEEeCCCEEEEEEEEc
Q 009392 163 EWWKSDTEAVINQALQSG-LAPNVSDSHTINGQPGPISSCSS-----------------QGGFTLPVDSGKTYMLRIINA 224 (535)
Q Consensus 163 d~~~~~~~~~~~~~~~~g-~~~~~~~~~liNG~~~~~~~~~~-----------------~~~~~~~v~~G~~~rlRliN~ 224 (535)
||+++...+......... ....++++.+|||++. +.|+. ...+.++|++|++|||||||+
T Consensus 164 Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa 241 (566)
T PLN02604 164 DWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGR--YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSL 241 (566)
T ss_pred ccccCCHHHHHHhhccCCCccCCCCCceEEcCCCC--CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEec
Confidence 999988766544332111 1123578999999864 44431 134589999999999999999
Q ss_pred CCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCc-eeEEEeecCCCCCcccCCCceEEEEEE
Q 009392 225 ALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSG-KYLVAASPFMDAPIAVDNVTATATLHY 303 (535)
Q Consensus 225 ~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g-~y~i~~~~~~~~~~~~~~~~~~ail~Y 303 (535)
|....+.|+|++|+|+|||+||.+++|++++.|.|++||||||+|++++++| +||||+.....+. +...+.|||+|
T Consensus 242 ~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~---~~~~~~aIL~Y 318 (566)
T PLN02604 242 TALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN---TTPPGLAIFNY 318 (566)
T ss_pred cccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC---CCcceeEEEEE
Confidence 9999999999999999999999999999999999999999999999998775 8999987543321 24578999999
Q ss_pred cCCCCCC-CC-CCCCCCCCCCcccccccccccccccCCCCCCCCCCccceEEEEEeecCcCCCCCccCCCCCeeEEEEcC
Q 009392 304 SGTLASS-AT-TLTSTPPKNGTAIANKFIDSLRSLNSKKYPAKVPQTVDHNLLFTVGLGVNPCPSCKAGNGSRVVASINN 381 (535)
Q Consensus 304 ~~~~~~~-~~-~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~iN~ 381 (535)
.+..... ++ ..+..+.+++..........+..+. ..+...+...++++.+....+. ....+.|++|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~---------~~~~~~w~in~ 387 (566)
T PLN02604 319 YPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARH--GYIHPPPLTSDRVIVLLNTQNE---------VNGYRRWSVNN 387 (566)
T ss_pred CCCCCCCCCCCCCCCCCcccccchhhcchhcccccc--cCcCCCCCCCCeEEEEeccccc---------cCCeEEEEECc
Confidence 9654321 11 1111122222111110001111111 0111123345666655332221 11256899999
Q ss_pred cccccChhhHHHhhhcccCCccccCCCCCCCcccc-----CCCCCCCCccCCCceeEEeeCCCEEEEEEecCCCC---CC
Q 009392 382 VTFVMPTIALLQAHFFNISGVFTTDFPGNPPHTYN-----FTGTPKNLQTSNGTKAYRLAYNSTVQLILQDTGII---AP 453 (535)
Q Consensus 382 ~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~p~~~~-----~~~~~~~~~~~~~~~~~~v~~g~~v~~vl~N~~~~---~~ 453 (535)
.+|..|+.|+|.+.+...++.++.+ .++..+. ......+...+.+..++.++.|++||++|+|...+ ..
T Consensus 388 ~~~~~p~~p~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~ 464 (566)
T PLN02604 388 VSFNLPHTPYLIALKENLTGAFDQT---PPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNS 464 (566)
T ss_pred ccCCCCCCchhHhhhhcCCCcccCC---CCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCC
Confidence 9999888888877665545555422 1111111 11001111123467789999999999999997522 35
Q ss_pred CCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEECCCCCCCCCCeeeec------cCceeee
Q 009392 454 ENHPVHLHGFNFFAVGKGLGNFNPKKDPKKFNLVDPVERNTIGVPSGGWVAIRXXXXXXXXAQIIQE------YGLCIAI 527 (535)
Q Consensus 454 ~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~RDTv~vp~~g~~virf~adnPG~w~~HCH------~gm~~~~ 527 (535)
..||||||||+||||++|.|.|++.++...+|+.||++|||+.||++||++|||++||||.|+|||| .||+..|
T Consensus 465 ~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~ 544 (566)
T PLN02604 465 ETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVF 544 (566)
T ss_pred CCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEE
Confidence 6899999999999999999999887666789999999999999999999999999999999999999 7888776
Q ss_pred e
Q 009392 528 W 528 (535)
Q Consensus 528 ~ 528 (535)
.
T Consensus 545 ~ 545 (566)
T PLN02604 545 E 545 (566)
T ss_pred e
Confidence 3
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=8.1e-96 Score=782.46 Aligned_cols=486 Identities=32% Similarity=0.546 Sum_probs=371.5
Q ss_pred eEEEEEEEEEEeeeccCCceeEEEECCCCCCcEEEEecCCEEEEEEEECCC-CCceEEeCCcccCCCCCCCCCCCcccCc
Q 009392 23 VRHYKFNVVMKNSTKLCSSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVK-YNVTIHWHGVRQLRTGWADGPAYITQCP 101 (535)
Q Consensus 23 ~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~-~~t~iH~HG~~~~~~~~~DGvp~~tq~~ 101 (535)
+|+|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+|. ++|+|||||+++.+++||||+|+++||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 489999999999999999999999999999999999999999999999995 8999999999999999999999999999
Q ss_pred CCCCCeEEEEEEeCCCCcceeEecChhhhh-cccEEEEEEeCCCCCCCCCCCCCceEEEEEEeeccCChHHHHHHHHhCC
Q 009392 102 IQSGHSYVYNFTITGQRGTLLWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVVVVLAEWWKSDTEAVINQALQSG 180 (535)
Q Consensus 102 i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 180 (535)
|+||++|+|+|++ .++||||||||...|+ +||+|+|||+++.....++ .+++|++|+++||+++...+.........
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999998 7999999999999998 8999999999986544444 46889999999999987765433322111
Q ss_pred -CCCCCCceEEEcCccCCCCCCCC-------------------CCceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeE
Q 009392 181 -LAPNVSDSHTINGQPGPISSCSS-------------------QGGFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLT 240 (535)
Q Consensus 181 -~~~~~~~~~liNG~~~~~~~~~~-------------------~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~ 240 (535)
....++++++|||+.. +.|.. .....++|++|++|||||||+|....+.|+|++|+|+
T Consensus 159 ~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~ 236 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQ--FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLT 236 (541)
T ss_pred CcCCCCCcceEECCCCC--CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEE
Confidence 1113568999999854 33421 1224589999999999999999999999999999999
Q ss_pred EEEeCCcccceeEeceEEeCCCceEEEEEEeCCCC-ceeEEEeecCCCCCcccCCCceEEEEEEcCCCCCCCC--CCCCC
Q 009392 241 VVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTS-GKYLVAASPFMDAPIAVDNVTATATLHYSGTLASSAT--TLTST 317 (535)
Q Consensus 241 via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~-g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~--~~~~~ 317 (535)
|||+||.+++|+.++.|.|++||||||+|++++++ |+||||+.....+ .....+.|||+|.++.....+ +.+..
T Consensus 237 VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~---~~~~~~~aiL~Y~~~~~~~~p~~~~~~~ 313 (541)
T TIGR03388 237 VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRK---PNTPPGLTVLNYYPNSPSRLPPTPPPVT 313 (541)
T ss_pred EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCC---CCCccEEEEEEECCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999866 4899999864332 123468899999886543211 11223
Q ss_pred CCCCCcccccccccccccccCCCCCCCCCCccceEEEEEeecCcCCCCCccCCCCCeeEEEEcCcccccChhhHHHhhhc
Q 009392 318 PPKNGTAIANKFIDSLRSLNSKKYPAKVPQTVDHNLLFTVGLGVNPCPSCKAGNGSRVVASINNVTFVMPTIALLQAHFF 397 (535)
Q Consensus 318 p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~~~l~~~~~ 397 (535)
|.+.+......+. +..+.....+ ..|..+++++.+....+. ......|++||.+|..|+.|+|.+.+.
T Consensus 314 p~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~n~~s~~~p~~p~l~~~~~ 381 (541)
T TIGR03388 314 PAWDDFDRSKAFS--LAIKAAMGSP-KPPETSDRRIVLLNTQNK---------INGYTKWAINNVSLTLPHTPYLGSLKY 381 (541)
T ss_pred CCccccchhhccc--hhhhccccCC-CCCCCCCcEEEEeccCcc---------cCceEEEEECcccCCCCCccHHHHHhh
Confidence 3333321111111 1111111111 123445666655433211 112457999999999888888776654
Q ss_pred ccCCccccCCC-CCCCccccCCCCCCCCccCCCceeEEeeCCCEEEEEEecCCCC---CCCCCCeeecCCCeEEEeecCC
Q 009392 398 NISGVFTTDFP-GNPPHTYNFTGTPKNLQTSNGTKAYRLAYNSTVQLILQDTGII---APENHPVHLHGFNFFAVGKGLG 473 (535)
Q Consensus 398 ~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vl~N~~~~---~~~~HP~HlHG~~F~Vl~~g~g 473 (535)
++.+++..+.+ ...+..|+....+.+...+.|+.++.++.|++||++|+|...+ ....||||||||+||||++|.|
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g 461 (541)
T TIGR03388 382 NLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEG 461 (541)
T ss_pred cCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccC
Confidence 44333322111 1111112211112222345578889999999999999996532 2568999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCccceEEeCCCCEEEECCCCCCCCCCeeeec------cCceeee
Q 009392 474 NFNPKKDPKKFNLVDPVERNTIGVPSGGWVAIRXXXXXXXXAQIIQE------YGLCIAI 527 (535)
Q Consensus 474 ~~~~~~~~~~~n~~~p~~RDTv~vp~~g~~virf~adnPG~w~~HCH------~gm~~~~ 527 (535)
.|++..+...+|+.||++|||+.||++||++|||++||||+|+|||| .||+..|
T Consensus 462 ~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~ 521 (541)
T TIGR03388 462 KFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVF 521 (541)
T ss_pred CCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEE
Confidence 99876556679999999999999999999999999999999999999 6777765
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=1.1e-93 Score=763.75 Aligned_cols=478 Identities=25% Similarity=0.412 Sum_probs=362.7
Q ss_pred EEEEEEEEEEeeeccCCceeEEEECCCCCCcEEEEecCCEEEEEEEECCC-CCceEEeCCcccCCCCCCCCCCCcccCcC
Q 009392 24 RHYKFNVVMKNSTKLCSSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVK-YNVTIHWHGVRQLRTGWADGPAYITQCPI 102 (535)
Q Consensus 24 ~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~-~~t~iH~HG~~~~~~~~~DGvp~~tq~~i 102 (535)
-.|+|+|++..+++||+.+.+++||||+|||+|++++||+|+|+|+|+|+ ++|+|||||++|..++|+||+|++|||||
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 36899999999999999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred CCCCeEEEEEEeC-CCCcceeEecChhhhhcccEEEEEEeCCCCCCCCCCCCCceEEEEEEeeccCChHHHHHHHHhCCC
Q 009392 103 QSGHSYVYNFTIT-GQRGTLLWHAHILWLRATVHGAIVILPKRGVPYPFPKPHKEVVVVLAEWWKSDTEAVINQALQSGL 181 (535)
Q Consensus 103 ~PG~~~~Y~~~~~-~~~Gt~wYH~H~~~~~~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~ 181 (535)
+||++|+|+|+++ +++||||||||...|+.||+|+|||+++.+.. + .+++|++|+++||+++...++.........
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~--~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPP--Y-KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccC--C-CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 9999999999983 58999999999999987899999999876443 2 357899999999999988776544332221
Q ss_pred -CCCCCceEEEcCccCCCCCCC-------CCCceeEEEeCCCEEEEEEEEcCCCceEEEEEcCce-eEEEEeCCccccee
Q 009392 182 -APNVSDSHTINGQPGPISSCS-------SQGGFTLPVDSGKTYMLRIINAALNEELFFKIAGHK-LTVVEVDATYVKPF 252 (535)
Q Consensus 182 -~~~~~~~~liNG~~~~~~~~~-------~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~-~~via~DG~~v~P~ 252 (535)
...++++++|||+..... |. .+..+.++|++||+|||||||+|....+.|+|++|+ |+|||+||.+++|+
T Consensus 166 ~~~~~~d~~liNG~~~~~~-~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~ 244 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNKS-FYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPA 244 (538)
T ss_pred ccCCCCceEEECCcccccc-ccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCce
Confidence 123568999999965321 10 113578999999999999999999999999999999 99999999999999
Q ss_pred EeceEEeCCCceEEEEEEeCCC-------CceeEEEeecCCCCCcccCCCceEEEEEEcCCCCCCCCCCCCCCCCCCccc
Q 009392 253 KTDNIVIAPGQTTNVLLSADKT-------SGKYLVAASPFMDAPIAVDNVTATATLHYSGTLASSATTLTSTPPKNGTAI 325 (535)
Q Consensus 253 ~~d~l~l~pGeR~dv~v~~~~~-------~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~p~~~~~~~ 325 (535)
.++.|.|++||||||+|+++++ +|+||||+.....+ +...+.|||+|.++...+.+..+..+.......
T Consensus 245 ~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~----~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~ 320 (538)
T TIGR03390 245 KIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP----KVYRGYAVLRYRSDKASKLPSVPETPPLPLPNS 320 (538)
T ss_pred EeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC----CcceEEEEEEeCCCCCCCCCCCCCCCCCCccCc
Confidence 9999999999999999999975 48999999754322 234579999998765433322222221111000
Q ss_pred c-cccccccccccCCCCCC-CCCCccceEEEEEeecCcCCCCCccCCCCCeeEEEEcCccccc--ChhhHHHhhhcccCC
Q 009392 326 A-NKFIDSLRSLNSKKYPA-KVPQTVDHNLLFTVGLGVNPCPSCKAGNGSRVVASINNVTFVM--PTIALLQAHFFNISG 401 (535)
Q Consensus 326 ~-~~~~~~l~~l~~~~~p~-~~p~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~--p~~~~l~~~~~~~~~ 401 (535)
. ......+.++.....+. ..+..+++++.+.+++.... ......|++||++|.. |+.|+|...+.+.
T Consensus 321 ~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~-------~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~-- 391 (538)
T TIGR03390 321 TYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDP-------LNGRVAWLQNGLSWTESVRQTPYLVDIYENG-- 391 (538)
T ss_pred chhhhheeeEecCccccCCCCCCCcCceEEEEEccccccc-------cCCeEEEEECCcccCCCCCCCchHHHHhcCC--
Confidence 0 00011334433211110 11344677777776653210 1235789999999985 6778777654321
Q ss_pred ccccCCCCCCCccccCCCCCCCCccCCCceeEEeeCCCEEEEEEecCCCC-----CCCCCCeeecCCCeEEEeecCCCCC
Q 009392 402 VFTTDFPGNPPHTYNFTGTPKNLQTSNGTKAYRLAYNSTVQLILQDTGII-----APENHPVHLHGFNFFAVGKGLGNFN 476 (535)
Q Consensus 402 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vl~N~~~~-----~~~~HP~HlHG~~F~Vl~~g~g~~~ 476 (535)
. +..++ |+. .........++.++.++.|++|||+|+|.... ....||||||||+||||++|.|.|+
T Consensus 392 -~----~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~ 462 (538)
T TIGR03390 392 -L----PATPN--YTA--ALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYN 462 (538)
T ss_pred -C----CcCCC--ccc--ccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccC
Confidence 0 10010 110 00000112345678999999999999996421 2578999999999999999999998
Q ss_pred CCCCCCCCCCCCCCccceEEeC----------CCCEEEECCCCCCCCCCeeeec------cCceeee
Q 009392 477 PKKDPKKFNLVDPVERNTIGVP----------SGGWVAIRXXXXXXXXAQIIQE------YGLCIAI 527 (535)
Q Consensus 477 ~~~~~~~~n~~~p~~RDTv~vp----------~~g~~virf~adnPG~w~~HCH------~gm~~~~ 527 (535)
+......+|+.||++|||+.|| ++||++|||++||||+|+|||| .||...+
T Consensus 463 ~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~ 529 (538)
T TIGR03390 463 ATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVW 529 (538)
T ss_pred CccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEE
Confidence 7654557889999999999996 7899999999999999999999 4665544
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=7.3e-77 Score=633.14 Aligned_cols=409 Identities=26% Similarity=0.398 Sum_probs=313.3
Q ss_pred EEEEEEEEEEeeeccCCceeEEEECCCCCCcEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCC
Q 009392 24 RHYKFNVVMKNSTKLCSSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQ 103 (535)
Q Consensus 24 ~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~ 103 (535)
++|+|++++..++++|+.+.+|+|||++|||+|++++||+|+|+|+|+|+++|+|||||+++.+. +||+|++|||+|+
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~--~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQ--MDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCcc--ccCCCcccccccC
Confidence 79999999999999999999999999999999999999999999999999999999999998755 9999999999999
Q ss_pred CCCeEEEEEEeCCCCcceeEecChhhhh-cccEEEEEEeCCCCCCCCCCCCCceEEEEEEeeccCChHHHHHHHHh----
Q 009392 104 SGHSYVYNFTITGQRGTLLWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVVVVLAEWWKSDTEAVINQALQ---- 178 (535)
Q Consensus 104 PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~---- 178 (535)
||++|+|+|++ .++||||||||...|. .||+|+|||++++..+. .+++|++|+|+||++.+...++..+..
T Consensus 124 PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~ 199 (587)
T TIGR01480 124 PGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAGH 199 (587)
T ss_pred CCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhccccc
Confidence 99999999998 7999999999998888 99999999998754332 468999999999998776665443220
Q ss_pred -----------------CCCC---------------C-------CCCceEEEcCccCCCCCCCCCCceeEEEeCCCEEEE
Q 009392 179 -----------------SGLA---------------P-------NVSDSHTINGQPGPISSCSSQGGFTLPVDSGKTYML 219 (535)
Q Consensus 179 -----------------~g~~---------------~-------~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rl 219 (535)
.|.. + .....+||||+.. ...+++.+++|++|||
T Consensus 200 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~-------~~~~~~~v~~G~rvRL 272 (587)
T TIGR01480 200 DNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP-------AGNWTGLFRPGEKVRL 272 (587)
T ss_pred ccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC-------CCCceEEECCCCEEEE
Confidence 1100 0 0012478999853 2346789999999999
Q ss_pred EEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCCCCCcccCCCceEE
Q 009392 220 RIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFMDAPIAVDNVTATA 299 (535)
Q Consensus 220 RliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~a 299 (535)
||||+|+.+.+.|+|+||+|+||++||.+++|+.++.+.|+|||||||+|++++ .|.|+|.+..... .....+
T Consensus 273 R~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~-~g~~~i~a~~~~~------~~~~~~ 345 (587)
T TIGR01480 273 RFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTG-DDAFTIFAQDSDR------TGYARG 345 (587)
T ss_pred EEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCC-CceEEEEEEecCC------CceEEE
Confidence 999999999999999999999999999999999999999999999999999875 5899999975432 235778
Q ss_pred EEEEcCCCCCCCCCCCCCC--CCCCccc-c----------------------------------c---------------
Q 009392 300 TLHYSGTLASSATTLTSTP--PKNGTAI-A----------------------------------N--------------- 327 (535)
Q Consensus 300 il~Y~~~~~~~~~~~~~~p--~~~~~~~-~----------------------------------~--------------- 327 (535)
+|++.+......+.++..| ...+... . .
T Consensus 346 ~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (587)
T TIGR01480 346 TLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLN 425 (587)
T ss_pred EEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcccccCC
Confidence 8887754221111111100 0000000 0 0
Q ss_pred ----------------------------ccccccccccCCCCCCCCCCccceEEEEEeecCcCCCCCccCCCCCeeEEEE
Q 009392 328 ----------------------------KFIDSLRSLNSKKYPAKVPQTVDHNLLFTVGLGVNPCPSCKAGNGSRVVASI 379 (535)
Q Consensus 328 ----------------------------~~~~~l~~l~~~~~p~~~p~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i 379 (535)
..+..|+.+. +...+..+++++.+.+.- +...+.|+|
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~----~~~~~~~p~r~~~~~L~g-----------~m~~~~wti 490 (587)
T TIGR01480 426 PLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLF----PPPDGRAPGREIELHLTG-----------NMERFAWSF 490 (587)
T ss_pred ccccccccCcccccCCCCcccccCCcceeehhhccccc----cccCcCCCCceEEEEEcC-----------CCceeEEEE
Confidence 0000000000 000011234444444321 234667999
Q ss_pred cCcccccChhhHHHhhhcccCCccccCCCCCCCccccCCCCCCCCccCCCceeEEeeCCCEEEEEEecCCCCCCCCCCee
Q 009392 380 NNVTFVMPTIALLQAHFFNISGVFTTDFPGNPPHTYNFTGTPKNLQTSNGTKAYRLAYNSTVQLILQDTGIIAPENHPVH 459 (535)
Q Consensus 380 N~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vl~N~~~~~~~~HP~H 459 (535)
||+.|.. ...+.++.|++|+|.|.|.+ .+.||||
T Consensus 491 NG~~~~~-------------------------------------------~~pl~v~~Gervri~l~N~t---~~~HpmH 524 (587)
T TIGR01480 491 DGEAFGL-------------------------------------------KTPLRFNYGERLRVVLVNDT---MMAHPIH 524 (587)
T ss_pred CCccCCC-------------------------------------------CCceEecCCCEEEEEEECCC---CCCccee
Confidence 9876521 11357899999999999976 6799999
Q ss_pred ecCCCeEEEeecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEECCCCCCCCCCeeeec------cCceeee
Q 009392 460 LHGFNFFAVGKGLGNFNPKKDPKKFNLVDPVERNTIGVPSGGWVAIRXXXXXXXXAQIIQE------YGLCIAI 527 (535)
Q Consensus 460 lHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~RDTv~vp~~g~~virf~adnPG~w~~HCH------~gm~~~~ 527 (535)
||||.|+|+..+ |. .+++|||+.|+|++.+.++|++||||.|+|||| .|||..+
T Consensus 525 lHG~~f~v~~~~-G~-------------~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~ 584 (587)
T TIGR01480 525 LHGMWSELEDGQ-GE-------------FQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREV 584 (587)
T ss_pred EcCceeeeecCC-Cc-------------ccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEE
Confidence 999999998654 32 256789999999999999999999999999999 7777664
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=5.3e-71 Score=584.32 Aligned_cols=416 Identities=18% Similarity=0.235 Sum_probs=291.3
Q ss_pred eEEEEEEEEEEeeeccCCc-eeEEEECCCCCCcEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCc
Q 009392 23 VRHYKFNVVMKNSTKLCSS-KPIVTVNRKFPGPTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCP 101 (535)
Q Consensus 23 ~~~~~l~~~~~~~~~~g~~-~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~ 101 (535)
...|+|++++...++++.. ..+|+|||++|||+||+++||+|+|+|+|+|+++|+|||||+++.+. +||+| ||+
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~~ 119 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QGI 119 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CCC
Confidence 3469999999999997654 46999999999999999999999999999999999999999999877 99987 799
Q ss_pred CCCCCeEEEEEEeCCCCcceeEecChh----hhh-cccEEEEEEeCCCCCCCCCCC--CCceEEEEEEeeccCChHHHHH
Q 009392 102 IQSGHSYVYNFTITGQRGTLLWHAHIL----WLR-ATVHGAIVILPKRGVPYPFPK--PHKEVVVVLAEWWKSDTEAVIN 174 (535)
Q Consensus 102 i~PG~~~~Y~~~~~~~~Gt~wYH~H~~----~~~-~Gl~G~iiV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~ 174 (535)
|+||++|+|+|++++++||||||+|.+ .|. +||+|+|||+++.+...+++. ..+|++|+++||+.+....+..
T Consensus 120 I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~ 199 (523)
T PRK10965 120 IAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDY 199 (523)
T ss_pred CCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceec
Confidence 999999999999955689999999974 455 899999999998765433332 3468999999998865543321
Q ss_pred HHH-hCCCCCCCCceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCCceEEEEE-cCceeEEEEeCCccc-ce
Q 009392 175 QAL-QSGLAPNVSDSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALNEELFFKI-AGHKLTVVEVDATYV-KP 251 (535)
Q Consensus 175 ~~~-~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~v-~P 251 (535)
... ........++.++|||+.. |.+.++ |++|||||||+|..+.+.|++ ++|+|+|||+||+++ +|
T Consensus 200 ~~~~~~~~~g~~gd~~lVNG~~~----------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P 268 (523)
T PRK10965 200 QLDVMTAAVGWFGDTLLTNGAIY----------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEP 268 (523)
T ss_pred cccccccccCccCCeEEECCccc----------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCc
Confidence 110 0011123568999999975 677775 579999999999999999998 899999999999987 89
Q ss_pred eEeceEEeCCCceEEEEEEeCCCCceeEEEeecCCCCCcc-cCCCceEEEEEEcCCCCCCCCCCCCCCCCCCcccccccc
Q 009392 252 FKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFMDAPIA-VDNVTATATLHYSGTLASSATTLTSTPPKNGTAIANKFI 330 (535)
Q Consensus 252 ~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~~~~~~-~~~~~~~ail~Y~~~~~~~~~~~~~~p~~~~~~~~~~~~ 330 (535)
+.++.|.|+|||||||+|++++ .+.|.+.+.+....... ........++++......... ..|.
T Consensus 269 ~~v~~l~lapGeR~dvlv~~~~-~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~P~----------- 333 (523)
T PRK10965 269 VKVSELPILMGERFEVLVDTSD-GKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASG---TLPD----------- 333 (523)
T ss_pred cEeCeEEECccceEEEEEEcCC-CceEEEEEecccCcccccccCCCceeEEEEeccCcCCCC---cCCh-----------
Confidence 9999999999999999999986 58899988654321100 001123455655543211110 1110
Q ss_pred cccccccCCCCCCCCCCccceEEEEEeecCcC---------CCC--CccC------------------CC-----CC--e
Q 009392 331 DSLRSLNSKKYPAKVPQTVDHNLLFTVGLGVN---------PCP--SCKA------------------GN-----GS--R 374 (535)
Q Consensus 331 ~~l~~l~~~~~p~~~p~~~~~~~~l~~~~~~~---------~~~--~~~~------------------~~-----g~--~ 374 (535)
.+..+... +. ......+++.+.+..... ... ...+ .. +. .
T Consensus 334 -~l~~~~~~--~~-~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (523)
T PRK10965 334 -SLASLPAL--PS-LEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFD 409 (523)
T ss_pred -hhccCCCC--Cc-ccccceeEEEEeeccccchhhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 11111100 00 000112333332210000 000 0000 00 00 0
Q ss_pred e--EEEEcCcccccChhhHHHhhhcccCCccccCCCCCCCccccCCCCCCCCccCCCceeEEeeCCCEEEEEEecCCCCC
Q 009392 375 V--VASINNVTFVMPTIALLQAHFFNISGVFTTDFPGNPPHTYNFTGTPKNLQTSNGTKAYRLAYNSTVQLILQDTGIIA 452 (535)
Q Consensus 375 ~--~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vl~N~~~~~ 452 (535)
+ .|+|||++|.. +...+.++.|++++|.|.|.+ .
T Consensus 410 ~~~~~~ING~~~~~------------------------------------------~~~~~~~~~G~~e~w~i~N~~--~ 445 (523)
T PRK10965 410 FHHANKINGKAFDM------------------------------------------NKPMFAAKKGQYERWVISGVG--D 445 (523)
T ss_pred ccccccCCCeECCC------------------------------------------CCcceecCCCCEEEEEEEeCC--C
Confidence 0 13566655421 112357899999999999975 2
Q ss_pred CCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEE--EECCC--CCCCCCCeeeec------cC
Q 009392 453 PENHPVHLHGFNFFAVGKGLGNFNPKKDPKKFNLVDPVERNTIGVPSGGWV--AIRXX--XXXXXXAQIIQE------YG 522 (535)
Q Consensus 453 ~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~RDTv~vp~~g~~--virf~--adnPG~w~~HCH------~g 522 (535)
.+.|||||||++||||+++... .....+.|||||.|++ +.+ +++|. +|++|.|+|||| .|
T Consensus 446 ~~~Hp~HlHg~~F~Vl~~~g~~---------~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~G 515 (523)
T PRK10965 446 MMLHPFHIHGTQFRILSENGKP---------PAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTG 515 (523)
T ss_pred CCccCeEEeCcEEEEEEecCCC---------CCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccC
Confidence 3589999999999999997321 2233578999999987 544 45555 578899999999 88
Q ss_pred ceeee
Q 009392 523 LCIAI 527 (535)
Q Consensus 523 m~~~~ 527 (535)
||..+
T Consensus 516 MM~~~ 520 (523)
T PRK10965 516 MMLGF 520 (523)
T ss_pred cccee
Confidence 88764
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=2.9e-69 Score=566.43 Aligned_cols=394 Identities=15% Similarity=0.167 Sum_probs=285.8
Q ss_pred EEEEEEEEEeeeccC-CceeEEEECCCCCCcEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCC
Q 009392 25 HYKFNVVMKNSTKLC-SSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQ 103 (535)
Q Consensus 25 ~~~l~~~~~~~~~~g-~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~ 103 (535)
.|+|+++.....+++ ..+.+|+|||++|||+||+++||+|+|+|+|+|+++|+|||||+++++. .+||++ ++|+
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I~ 121 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMMS 121 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccCC
Confidence 379999999999885 6788999999999999999999999999999999999999999999876 477775 7899
Q ss_pred CCCeEEEEEEeCCCCcceeEecChhh----hh-cccEEEEEEeCCCCCCCCCCC--CCceEEEEEEeeccCChHHHHHHH
Q 009392 104 SGHSYVYNFTITGQRGTLLWHAHILW----LR-ATVHGAIVILPKRGVPYPFPK--PHKEVVVVLAEWWKSDTEAVINQA 176 (535)
Q Consensus 104 PG~~~~Y~~~~~~~~Gt~wYH~H~~~----~~-~Gl~G~iiV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~~~ 176 (535)
||++|+|+|++++++||||||+|.++ |. +||+|+|||+++.+...+++. ..+|++|+++||..+........
T Consensus 122 PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~- 200 (471)
T PRK10883 122 PNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN- 200 (471)
T ss_pred CCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-
Confidence 99999999998667999999999876 44 899999999998765444433 34589999999988654332110
Q ss_pred HhCCCCCCCCceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCCceEEEEE-cCceeEEEEeCCccc-ceeEe
Q 009392 177 LQSGLAPNVSDSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALNEELFFKI-AGHKLTVVEVDATYV-KPFKT 254 (535)
Q Consensus 177 ~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~v-~P~~~ 254 (535)
........++.++|||+.. |.++|++| +|||||||+|..+.+.|+| ++|+|+|||+||+.+ +|+.+
T Consensus 201 -~~~~~g~~gd~~lvNG~~~----------p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~ 268 (471)
T PRK10883 201 -EPGSGGFVGDTLLVNGVQS----------PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSV 268 (471)
T ss_pred -ccccCCccCCeeEECCccC----------CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEe
Confidence 1111123578999999975 78999885 8999999999999999999 899999999998776 89999
Q ss_pred ceEEeCCCceEEEEEEeCCCCceeEEEeecCCCCCc----ccCCC---ceEEEEEEcCCCCCCCCCCCCCCCCCCccccc
Q 009392 255 DNIVIAPGQTTNVLLSADKTSGKYLVAASPFMDAPI----AVDNV---TATATLHYSGTLASSATTLTSTPPKNGTAIAN 327 (535)
Q Consensus 255 d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~~~~~----~~~~~---~~~ail~Y~~~~~~~~~~~~~~p~~~~~~~~~ 327 (535)
+.+.|+|||||||+|++++ .+.+.+++........ .+... ....+++......... .....|
T Consensus 269 ~~l~l~pGeR~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p--------- 337 (471)
T PRK10883 269 KQLSLAPGERREILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPL-VTDNLP--------- 337 (471)
T ss_pred CeEEECCCCeEEEEEECCC-CceEEEECCCccccccccccccCCccccccceeEEEEccccccC-CCCcCC---------
Confidence 9999999999999999986 4677777632111000 00000 0112222221110000 000000
Q ss_pred ccccccccccCCCCCCCCCCccceEEEEEeecCcCCCCCccCCCCCeeEEEEcCcccccChhhHHHhhhcccCCccccCC
Q 009392 328 KFIDSLRSLNSKKYPAKVPQTVDHNLLFTVGLGVNPCPSCKAGNGSRVVASINNVTFVMPTIALLQAHFFNISGVFTTDF 407 (535)
Q Consensus 328 ~~~~~l~~l~~~~~p~~~p~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~ 407 (535)
..+.. +. ..+....+++.+.++. . .|.|||++|....
T Consensus 338 ---~~l~~---~~---~~~~~~~~~~~~~l~~-------------~--~~~INg~~~~~~~------------------- 374 (471)
T PRK10883 338 ---MRLLP---DE---IMEGSPIRSREISLGD-------------D--LPGINGALWDMNR------------------- 374 (471)
T ss_pred ---hhhcC---CC---CCCCCCcceEEEEecC-------------C--cCccCCcccCCCc-------------------
Confidence 00110 00 0111233444444321 1 2579998773210
Q ss_pred CCCCCccccCCCCCCCCccCCCceeEEeeCCCEEEEEEecCCCCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCC
Q 009392 408 PGNPPHTYNFTGTPKNLQTSNGTKAYRLAYNSTVQLILQDTGIIAPENHPVHLHGFNFFAVGKGLGNFNPKKDPKKFNLV 487 (535)
Q Consensus 408 ~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~ 487 (535)
..+.++.|++++|+|.|. +.|||||||+.||||+++... ....
T Consensus 375 -----------------------~~~~~~~g~~e~W~~~n~-----~~HP~HlHg~~FqVl~~~G~~---------~~~~ 417 (471)
T PRK10883 375 -----------------------IDVTAQQGTWERWTVRAD-----MPQAFHIEGVMFLIRNVNGAM---------PFPE 417 (471)
T ss_pred -----------------------ceeecCCCCEEEEEEECC-----CCcCEeECCccEEEEEecCCC---------CCcc
Confidence 124678999999999883 589999999999999997321 1122
Q ss_pred CCCccceEEeCCCCEEEECCCCCCCC----CCeeeec------cCceeeeee
Q 009392 488 DPVERNTIGVPSGGWVAIRXXXXXXX----XAQIIQE------YGLCIAIWK 529 (535)
Q Consensus 488 ~p~~RDTv~vp~~g~~virf~adnPG----~w~~HCH------~gm~~~~~~ 529 (535)
+..|||||.|+ +.+.|++++|++| .|||||| .|||..|-.
T Consensus 418 ~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V 467 (471)
T PRK10883 418 DRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLV 467 (471)
T ss_pred ccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEE
Confidence 35799999996 4699999999887 8999999 889887643
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.4e-56 Score=467.04 Aligned_cols=402 Identities=22% Similarity=0.300 Sum_probs=282.4
Q ss_pred EEEEEEEEEEeeeccCCceeEEEECCCCCCcEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCC
Q 009392 24 RHYKFNVVMKNSTKLCSSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQ 103 (535)
Q Consensus 24 ~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~ 103 (535)
+.+.+..+......++.....+.+||++|||+||+++||+|+|+++|+|.+.|++||||+.+++. +||++..+|+++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p~~--~dG~~~~~~~~~~ 111 (451)
T COG2132 34 RTFLTAQRAQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVPGE--MDGVPPLTQIPPG 111 (451)
T ss_pred ceEEeecccceeeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccCcc--ccCCCcccccCCC
Confidence 33333333344445678888999999999999999999999999999998879999999888855 9999999999999
Q ss_pred CCCeEEEEEEeCCCCcceeEecChhhhh-cccEEEEEEeCCCCCCCCCCCCCceEEEEEEeeccCChHHHHHHHHhCCCC
Q 009392 104 SGHSYVYNFTITGQRGTLLWHAHILWLR-ATVHGAIVILPKRGVPYPFPKPHKEVVVVLAEWWKSDTEAVINQALQSGLA 182 (535)
Q Consensus 104 PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~ 182 (535)
||++++|.|+. .++||||||+|.++|. +||+|++||++..+.+. ..|++..++..+|........... .....
T Consensus 112 ~~~~~~y~f~~-~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~--~~~~~ 185 (451)
T COG2132 112 PGETPTYTFTQ-DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE--GPAMG 185 (451)
T ss_pred CCCcEEEeecC-CCCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC--Ccccc
Confidence 99999999998 6788999999999998 99999999999976553 346667777777776554433322 11112
Q ss_pred CCCCceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCC
Q 009392 183 PNVSDSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPG 262 (535)
Q Consensus 183 ~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pG 262 (535)
....+..+|||+.. +.+.++. ++||||++|++....+.+++.+++|+||++||.+++|..+|.+.|+||
T Consensus 186 ~~~g~~~~vnG~~~----------p~~~~~~-g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~ 254 (451)
T COG2132 186 GFPGDTLLVNGAIL----------PFKAVPG-GVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPG 254 (451)
T ss_pred CCCCCeEEECCCcc----------ceeecCC-CeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCc
Confidence 23568999999754 4555555 569999999998888888888999999999999998899999999999
Q ss_pred ceEEEEEEeCCCCceeEEEeecCCCCCcccCCCceEEEEEEcCCCCCCCCCCCC---CCCCCCcccccccccccccccCC
Q 009392 263 QTTNVLLSADKTSGKYLVAASPFMDAPIAVDNVTATATLHYSGTLASSATTLTS---TPPKNGTAIANKFIDSLRSLNSK 339 (535)
Q Consensus 263 eR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~---~p~~~~~~~~~~~~~~l~~l~~~ 339 (535)
|||||++++++ .+.+.+.+... +.. ....+..........+...... .+.. +. ........++..
T Consensus 255 er~~v~v~~~~-~~~~~l~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~-~~~~~~~~~~~~--- 322 (451)
T COG2132 255 ERYEVLVDMND-GGAVTLTALGE-DMP-----DTLKGFRAPNPILTPSYPVLNGRVGAPTG-DM-ADHAPVGLLVTI--- 322 (451)
T ss_pred ceEEEEEEcCC-CCeEEEEeccc-cCC-----ceeeeeeccccccccccccccccccCCCc-ch-hhccccccchhh---
Confidence 99999999997 68899998751 110 1111121111101000000000 0000 00 000000000000
Q ss_pred CCCCCCCC-ccceEEEEEeecCcCCCCCccCCCCCeeEEEEcCcccccChhhHHHhhhcccCCccccCCCCCCCccccCC
Q 009392 340 KYPAKVPQ-TVDHNLLFTVGLGVNPCPSCKAGNGSRVVASINNVTFVMPTIALLQAHFFNISGVFTTDFPGNPPHTYNFT 418 (535)
Q Consensus 340 ~~p~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~ 418 (535)
.+ .+. ..+....+.. ......|.+|++.|..
T Consensus 323 -~~--~~~~~~~~~~~l~~-------------~~~~~~~~~n~~~~~~-------------------------------- 354 (451)
T COG2132 323 -LV--EPGPNRDTDFHLIG-------------GIGGYVWAINGKAFDD-------------------------------- 354 (451)
T ss_pred -cC--CCcccccccchhhc-------------ccccccccccCccCCC--------------------------------
Confidence 00 000 0001000000 0012235566554421
Q ss_pred CCCCCCccCCCceeEEeeCCCEEEEEEecCCCCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCCccceEEeC
Q 009392 419 GTPKNLQTSNGTKAYRLAYNSTVQLILQDTGIIAPENHPVHLHGFNFFAVGKGLGNFNPKKDPKKFNLVDPVERNTIGVP 498 (535)
Q Consensus 419 ~~~~~~~~~~~~~~~~v~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~RDTv~vp 498 (535)
+...+.++.|++++|+|.|.+ .+.|||||||+.|+|++.+ . ..-...+.||||+.+.
T Consensus 355 ----------~~~~~~~~~G~~~~~~i~n~~---~~~HP~HlHg~~F~v~~~~-~---------~~~~~~~~~kDTv~v~ 411 (451)
T COG2132 355 ----------NRVTLIAKAGTRERWVLTNDT---PMPHPFHLHGHFFQVLSGD-A---------PAPGAAPGWKDTVLVA 411 (451)
T ss_pred ----------CcCceeecCCCEEEEEEECCC---CCccCeEEcCceEEEEecC-C---------CcccccCccceEEEeC
Confidence 123467899999999999975 5899999999999999997 1 1223468999999999
Q ss_pred CCCEEEECCCCCCCCCCeeeec------cCceeee
Q 009392 499 SGGWVAIRXXXXXXXXAQIIQE------YGLCIAI 527 (535)
Q Consensus 499 ~~g~~virf~adnPG~w~~HCH------~gm~~~~ 527 (535)
++..++|+|++|+||.|+|||| .|||..+
T Consensus 412 ~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~ 446 (451)
T COG2132 412 PGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQF 446 (451)
T ss_pred CCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEE
Confidence 9999999999999999999999 7777543
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=2.4e-48 Score=387.64 Aligned_cols=264 Identities=18% Similarity=0.272 Sum_probs=216.9
Q ss_pred cceeEEEEEEEEEEeee-ccCCceeEEEECCCCCCcEEEEecCCEEEEEEEECCC--CCceEEeCCcccCCCCCCCCCCC
Q 009392 20 ECRVRHYKFNVVMKNST-KLCSSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVK--YNVTIHWHGVRQLRTGWADGPAY 96 (535)
Q Consensus 20 ~~~~~~~~l~~~~~~~~-~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~--~~t~iH~HG~~~~~~~~~DGvp~ 96 (535)
...+++|+|++++..++ .+|..+.+|+|||++|||+|++++||+|+|+|+|.+. .++++||||.. ++||+++
T Consensus 24 ~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~~ 98 (311)
T TIGR02376 24 GPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGAA 98 (311)
T ss_pred CCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCCc
Confidence 35889999999999988 5799999999999999999999999999999999985 58999999963 3899888
Q ss_pred cccCcCCCCCeEEEEEEeCCCCcceeEecChhh----hh-cccEEEEEEeCCCCCCCCCCCCCceEEEEEEeeccCChHH
Q 009392 97 ITQCPIQSGHSYVYNFTITGQRGTLLWHAHILW----LR-ATVHGAIVILPKRGVPYPFPKPHKEVVVVLAEWWKSDTEA 171 (535)
Q Consensus 97 ~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~----~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~ 171 (535)
++| |+||++++|+|.+ +++||||||||.++ |. .||+|+|||++++..+ ..++|++|+++||+.+....
T Consensus 99 ~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~~~~ 171 (311)
T TIGR02376 99 LTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPKDEG 171 (311)
T ss_pred cee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEecccccc
Confidence 877 9999999999998 79999999999643 55 8999999999875422 46889999999998865332
Q ss_pred HH---HHHHhCCCCCCCCceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcc
Q 009392 172 VI---NQALQSGLAPNVSDSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATY 248 (535)
Q Consensus 172 ~~---~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~ 248 (535)
.. ...... .....++.++|||+.++. .+.+++++|+++||||+|+|....+.|+++++.+++|+.||.+
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~iNG~~~~~-------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~ 243 (311)
T TIGR02376 172 EGGAYEDDVAA-MRTLTPTHVVFNGAVGAL-------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKF 243 (311)
T ss_pred ccccccchHHH-HhcCCCCEEEECCccCCC-------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcc
Confidence 10 000000 011356899999996521 1457899999999999999998888999999999999999999
Q ss_pred ccee--EeceEEeCCCceEEEEEEeCCCCceeEEEeecCCCCCcccCCCceEEEEEEcCCCC
Q 009392 249 VKPF--KTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFMDAPIAVDNVTATATLHYSGTLA 308 (535)
Q Consensus 249 v~P~--~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~ 308 (535)
+.|. .++++.|+||||+||+|++++ ||.|+++|+.+... .+....|+|.|.+...
T Consensus 244 ~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG~y~~~~~~~~~~----~~~g~~~~i~~~g~~~ 300 (311)
T TIGR02376 244 ANPPNRDVETWFIPGGSAAAALYTFEQ-PGVYAYVDHNLIEA----FEKGAAAQVKVEGAWN 300 (311)
T ss_pred cCCCCCCcceEEECCCceEEEEEEeCC-CeEEEEECcHHHHH----HhCCCEEEEEECCCCC
Confidence 9653 489999999999999999997 89999999875432 1234789999987553
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=8.8e-37 Score=260.20 Aligned_cols=116 Identities=38% Similarity=0.680 Sum_probs=109.1
Q ss_pred EEEEEeeeccCCceeEEEECCCCCCcEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeE
Q 009392 29 NVVMKNSTKLCSSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSY 108 (535)
Q Consensus 29 ~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~ 108 (535)
+|++..+.++|..+.+|+|||++|||+|++++||+|+|+|+|+++++++|||||+++...+|+||+++++||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47889999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcceeEecChhhhh-cccEEEEEEeCCC
Q 009392 109 VYNFTITGQRGTLLWHAHILWLR-ATVHGAIVILPKR 144 (535)
Q Consensus 109 ~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~iiV~~~~ 144 (535)
+|+|++++++||||||||.+.+. +||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 99999955599999999999976 9999999999863
No 19
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.96 E-value=1.7e-28 Score=222.48 Aligned_cols=150 Identities=36% Similarity=0.624 Sum_probs=123.4
Q ss_pred ceEEEEEEeeccCChHHHHHHHHhCCC----CCCCCceEEEcCccCCCCCCC-----CCCceeEEEeCCCEEEEEEEEcC
Q 009392 155 KEVVVVLAEWWKSDTEAVINQALQSGL----APNVSDSHTINGQPGPISSCS-----SQGGFTLPVDSGKTYMLRIINAA 225 (535)
Q Consensus 155 ~e~~l~~~d~~~~~~~~~~~~~~~~g~----~~~~~~~~liNG~~~~~~~~~-----~~~~~~~~v~~G~~~rlRliN~~ 225 (535)
+|++|+++||+++....+..+....+. .+..+++++|||+.+ +.|+ ....+.+++++|++|||||||+|
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR--FDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC--BTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc--cccccccccccccceEEEcCCcEEEEEEEecc
Confidence 478999999999988877665544432 356889999999975 4554 24579999999999999999999
Q ss_pred CCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCCCCCcccCCCceEEEEEEcC
Q 009392 226 LNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFMDAPIAVDNVTATATLHYSG 305 (535)
Q Consensus 226 ~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~ 305 (535)
+...+.|+|++|+|+|||+||.+++|+.++++.|+|||||||+|++++++|+|+|++................|+|+|.+
T Consensus 79 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 79 ASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp SS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred CCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999878999999963222222334567999999987
Q ss_pred C
Q 009392 306 T 306 (535)
Q Consensus 306 ~ 306 (535)
+
T Consensus 159 ~ 159 (159)
T PF00394_consen 159 A 159 (159)
T ss_dssp S
T ss_pred C
Confidence 4
No 20
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.91 E-value=6e-25 Score=194.92 Aligned_cols=101 Identities=31% Similarity=0.547 Sum_probs=88.4
Q ss_pred CCCceeEEeeCCCEEEEEEecCCCCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEC
Q 009392 427 SNGTKAYRLAYNSTVQLILQDTGIIAPENHPVHLHGFNFFAVGKGLGNFNPKKDPKKFNLVDPVERNTIGVPSGGWVAIR 506 (535)
Q Consensus 427 ~~~~~~~~v~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~RDTv~vp~~g~~vir 506 (535)
+.+..++.++.|++|+|+|.|.+ ...|||||||++|+|++++.+.++.. ....+++.+|.||||+.|+++++++||
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i~ 105 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVIR 105 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEEE
T ss_pred CCCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEEE
Confidence 45778899999999999999965 56999999999999999997765443 345678899999999999999999999
Q ss_pred CCCCCCCCCeeeec------cCceeeeeecc
Q 009392 507 XXXXXXXXAQIIQE------YGLCIAIWKYT 531 (535)
Q Consensus 507 f~adnPG~w~~HCH------~gm~~~~~~~~ 531 (535)
|++||||.|+|||| .|||..+....
T Consensus 106 ~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 106 FRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 99999999999999 89999887543
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.77 E-value=6.2e-18 Score=149.59 Aligned_cols=104 Identities=17% Similarity=0.132 Sum_probs=83.1
Q ss_pred eccCCceeEEEECCCCCCcEEEEecCCEEEEEEEECCC---CCceEEeCCcccCCCCCCCCCCCcccCcCCCC---C-e-
Q 009392 36 TKLCSSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVK---YNVTIHWHGVRQLRTGWADGPAYITQCPIQSG---H-S- 107 (535)
Q Consensus 36 ~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~---~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG---~-~- 107 (535)
...+.....+.++| .++|+|++++||+|+|+|+|.+. ....||+||...+..+.+||++.++||+|.|+ + .
T Consensus 35 ~~~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~ 113 (148)
T TIGR03095 35 PMPGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFG 113 (148)
T ss_pred cCCCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccc
Confidence 34466677788899 56899999999999999999954 45677777766554455899999999998884 1 1
Q ss_pred -EEEEEEeCCCCcceeEecChhhhh-cccEEEEEEe
Q 009392 108 -YVYNFTITGQRGTLLWHAHILWLR-ATVHGAIVIL 141 (535)
Q Consensus 108 -~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~iiV~ 141 (535)
.+++|+. .++||||||||..+++ +||+|.|||+
T Consensus 114 ~~~~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 114 YTDFTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred eeEEEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 2445555 5899999999999988 8999999995
No 22
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.67 E-value=3.3e-15 Score=160.49 Aligned_cols=226 Identities=13% Similarity=0.127 Sum_probs=144.3
Q ss_pred EEECCCCCC--cEEEEecCCEEEEEEEECCC-CCceEEeCCcccCCCCCCCCCCC----cccCcCCCCCeEEEEEEeCCC
Q 009392 45 VTVNRKFPG--PTLYAREHDTVLVKVVNHVK-YNVTIHWHGVRQLRTGWADGPAY----ITQCPIQSGHSYVYNFTITGQ 117 (535)
Q Consensus 45 ~~~NG~~pg--P~i~~~~Gd~v~v~v~N~l~-~~t~iH~HG~~~~~~~~~DGvp~----~tq~~i~PG~~~~Y~~~~~~~ 117 (535)
+++||+.+. +++.+++|+++|+|++|... ....++..|....-.. .||.+- +....|.|||+|+..+++ .+
T Consensus 249 ~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa-~DG~~v~Pv~vd~l~I~pGeRyDVlV~~-~~ 326 (587)
T TIGR01480 249 YLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVA-VDGQYVHPVSVDEFRIAPAETFDVIVEP-TG 326 (587)
T ss_pred EEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEE-cCCcCcCceEeCeEEEcCcceeEEEEec-CC
Confidence 789999863 58999999999999999975 4577888887654332 688543 345668999999999997 56
Q ss_pred CcceeEecChhhhhcccEEEEEE-eCCCCCCCC-CCCC----CceEEE------------EEE-----ee----------
Q 009392 118 RGTLLWHAHILWLRATVHGAIVI-LPKRGVPYP-FPKP----HKEVVV------------VLA-----EW---------- 164 (535)
Q Consensus 118 ~Gt~wYH~H~~~~~~Gl~G~iiV-~~~~~~~~~-~~~~----~~e~~l------------~~~-----d~---------- 164 (535)
.|.|+..+...+. .|...+.+. ........| .+.. ..+.-. ... |.
T Consensus 327 ~g~~~i~a~~~~~-~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (587)
T TIGR01480 327 DDAFTIFAQDSDR-TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPM 405 (587)
T ss_pred CceEEEEEEecCC-CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccC
Confidence 7899988865332 233333332 221111111 1000 000000 000 00
Q ss_pred ccC----------------------------------------ChHHH--HHHHHhCC-----CCC----------C-CC
Q 009392 165 WKS----------------------------------------DTEAV--INQALQSG-----LAP----------N-VS 186 (535)
Q Consensus 165 ~~~----------------------------------------~~~~~--~~~~~~~g-----~~~----------~-~~ 186 (535)
.+. ....+ +.++.... ..+ . ..
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m~~ 485 (587)
T TIGR01480 406 DHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNMER 485 (587)
T ss_pred ccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCCce
Confidence 000 00000 00000000 001 0 11
Q ss_pred ceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEE
Q 009392 187 DSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTN 266 (535)
Q Consensus 187 ~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~d 266 (535)
..|+|||+.++ ..+.++++.|+++||||+|.+... +.+|+|||.|.+...||.+ +...|++.|.|||+++
T Consensus 486 ~~wtiNG~~~~-------~~~pl~v~~Gervri~l~N~t~~~-HpmHlHG~~f~v~~~~G~~--~~~~dTv~V~Pg~t~~ 555 (587)
T TIGR01480 486 FAWSFDGEAFG-------LKTPLRFNYGERLRVVLVNDTMMA-HPIHLHGMWSELEDGQGEF--QVRKHTVDVPPGGKRS 555 (587)
T ss_pred eEEEECCccCC-------CCCceEecCCCEEEEEEECCCCCC-cceeEcCceeeeecCCCcc--cccCCceeeCCCCEEE
Confidence 24899999752 224688999999999999988655 5599999999999888863 2345889999999999
Q ss_pred EEEEeCCCCceeEEEeec
Q 009392 267 VLLSADKTSGKYLVAASP 284 (535)
Q Consensus 267 v~v~~~~~~g~y~i~~~~ 284 (535)
+.+++++ ||.|++|||.
T Consensus 556 ~~f~ad~-pG~w~~HCH~ 572 (587)
T TIGR01480 556 FRVTADA-LGRWAYHCHM 572 (587)
T ss_pred EEEECCC-CeEEEEcCCC
Confidence 9999997 8999999995
No 23
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.56 E-value=4.3e-13 Score=134.33 Aligned_cols=230 Identities=14% Similarity=0.092 Sum_probs=137.2
Q ss_pred CceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCC-ceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCce
Q 009392 186 SDSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALN-EELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQT 264 (535)
Q Consensus 186 ~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~-~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR 264 (535)
.+.+++||+.. .|.++++.|+++++++.|.... ..+.+++|++. +.||... ...|.|||+
T Consensus 47 ~~~~~~nG~~p---------GP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t 107 (311)
T TIGR02376 47 YQAMTFDGSVP---------GPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGET 107 (311)
T ss_pred EEEEEECCccc---------CceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCe
Confidence 36799999842 3899999999999999998632 35668888764 4576531 234899999
Q ss_pred EEEEEEeCCCCceeEEEeecCCCCCcccCCCceEEEEEEcCCCCCCCCCCCCCCCCCCcccccccccccccccCCCCCCC
Q 009392 265 TNVLLSADKTSGKYLVAASPFMDAPIAVDNVTATATLHYSGTLASSATTLTSTPPKNGTAIANKFIDSLRSLNSKKYPAK 344 (535)
Q Consensus 265 ~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~ 344 (535)
+.+.+++++ +|.||+|||.......... ....+.|....... . |..+... .. -+.........
T Consensus 108 ~ty~F~~~~-~Gty~YH~H~~~~~~~q~~-~Gl~G~liV~~~~~--~------~~~d~e~-~l----~l~d~~~~~~~-- 170 (311)
T TIGR02376 108 ATLRFKATR-PGAFVYHCAPPGMVPWHVV-SGMNGAIMVLPREG--L------PEYDKEY-YI----GESDLYTPKDE-- 170 (311)
T ss_pred EEEEEEcCC-CEEEEEEcCCCCchhHHhh-cCcceEEEeeccCC--C------cCcceeE-EE----eeeeEeccccc--
Confidence 999999986 8999999995321000001 11233333332111 0 1111100 00 00000000000
Q ss_pred CCCccceEEEEEeecCcCCCCCccCCCCCeeEEEEcCcccccChhhHHHhhhcccCCccccCCCCCCCccccCCCCCCCC
Q 009392 345 VPQTVDHNLLFTVGLGVNPCPSCKAGNGSRVVASINNVTFVMPTIALLQAHFFNISGVFTTDFPGNPPHTYNFTGTPKNL 424 (535)
Q Consensus 345 ~p~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 424 (535)
.... .+....... ....+. ...+||+....
T Consensus 171 ---~~~~--~~~~~~~~~-----~~~~~~--~~~iNG~~~~~-------------------------------------- 200 (311)
T TIGR02376 171 ---GEGG--AYEDDVAAM-----RTLTPT--HVVFNGAVGAL-------------------------------------- 200 (311)
T ss_pred ---cccc--cccchHHHH-----hcCCCC--EEEECCccCCC--------------------------------------
Confidence 0000 000000000 000111 24677753210
Q ss_pred ccCCCceeEEeeCCCEEEEEEecCCCCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCC--ccceEEeCCCCE
Q 009392 425 QTSNGTKAYRLAYNSTVQLILQDTGIIAPENHPVHLHGFNFFAVGKGLGNFNPKKDPKKFNLVDPV--ERNTIGVPSGGW 502 (535)
Q Consensus 425 ~~~~~~~~~~v~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~--~RDTv~vp~~g~ 502 (535)
...+.++.|++++|.|.|.+ ....+.||++|++|.++....+. .+++ ..||+.|.+|..
T Consensus 201 -----~~~~~v~~G~~~RlRiiNa~--~~~~~~~~~~g~~~~~v~~DG~~------------~~~~~~~~~~~~i~PG~R 261 (311)
T TIGR02376 201 -----TGDNALTAGVGERVLFVHSQ--PNRDSRPHLIGGHGDYVWVTGKF------------ANPPNRDVETWFIPGGSA 261 (311)
T ss_pred -----CCCcccccCCcEEEEEEcCC--CCCCCCCeEecCCceEEEECCcc------------cCCCCCCcceEEECCCce
Confidence 00136778999999999976 24678999999999999996332 1232 269999999999
Q ss_pred EEECCCCCCCCCCeeeec
Q 009392 503 VAIRXXXXXXXXAQIIQE 520 (535)
Q Consensus 503 ~virf~adnPG~w~~HCH 520 (535)
+.|-++++.||.|.+|||
T Consensus 262 ~dv~v~~~~pG~y~~~~~ 279 (311)
T TIGR02376 262 AAALYTFEQPGVYAYVDH 279 (311)
T ss_pred EEEEEEeCCCeEEEEECc
Confidence 999999999999999999
No 24
>PRK10965 multicopper oxidase; Provisional
Probab=99.45 E-value=9.7e-12 Score=132.76 Aligned_cols=233 Identities=12% Similarity=0.149 Sum_probs=141.3
Q ss_pred ceeEEEECCCCCCcEEEEecCCEEEEEEEECCC-CCceEEe-CCcccCCCCCCCCCCC-----cccCcCCCCCeEEEEEE
Q 009392 41 SKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVK-YNVTIHW-HGVRQLRTGWADGPAY-----ITQCPIQSGHSYVYNFT 113 (535)
Q Consensus 41 ~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~-~~t~iH~-HG~~~~~~~~~DGvp~-----~tq~~i~PG~~~~Y~~~ 113 (535)
....+++||+. .|.+.+. |.++|+|+.|... ....+.+ .|....-.. .||.+. ++...|.|||+++..++
T Consensus 211 ~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa-~DG~~l~~P~~v~~l~lapGeR~dvlv~ 287 (523)
T PRK10965 211 FGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIA-SDGGLLAEPVKVSELPILMGERFEVLVD 287 (523)
T ss_pred cCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEE-eCCCcccCccEeCeEEECccceEEEEEE
Confidence 44678999995 6988885 6699999999974 4556666 453322221 688432 33466899999999999
Q ss_pred eCCCCcceeEecChhhhhccc--------EEEEEEeC--CC-CCCCC--------CCC----CCceEEEEEEeecc----
Q 009392 114 ITGQRGTLLWHAHILWLRATV--------HGAIVILP--KR-GVPYP--------FPK----PHKEVVVVLAEWWK---- 166 (535)
Q Consensus 114 ~~~~~Gt~wYH~H~~~~~~Gl--------~G~iiV~~--~~-~~~~~--------~~~----~~~e~~l~~~d~~~---- 166 (535)
. .+.|.++...-.... .|+ +-.+.+.. .. ....| .+. ..+...+.+..+..
T Consensus 288 ~-~~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m 365 (523)
T PRK10965 288 T-SDGKAFDLVTLPVSQ-MGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGM 365 (523)
T ss_pred c-CCCceEEEEEecccC-cccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhh
Confidence 8 556777766532111 111 11222331 11 10111 000 01122332211100
Q ss_pred -----CChHHHHHHH--------H--------hCC---CCC--CCCceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEE
Q 009392 167 -----SDTEAVINQA--------L--------QSG---LAP--NVSDSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLR 220 (535)
Q Consensus 167 -----~~~~~~~~~~--------~--------~~g---~~~--~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlR 220 (535)
.........+ . ..| ..+ .....++|||+.+. ...+.++++.|++.+|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~------~~~~~~~~~~G~~e~w~ 439 (523)
T PRK10965 366 QMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFD------MNKPMFAAKKGQYERWV 439 (523)
T ss_pred hhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECC------CCCcceecCCCCEEEEE
Confidence 0000000000 0 000 000 00112489999752 13467889999999999
Q ss_pred EEEcCCCceEEEEEcCceeEEEEeCCcccc---eeEeceEEeCCCceEEEEEEeCC---CCceeEEEeecC
Q 009392 221 IINAALNEELFFKIAGHKLTVVEVDATYVK---PFKTDNIVIAPGQTTNVLLSADK---TSGKYLVAASPF 285 (535)
Q Consensus 221 liN~~~~~~~~~~i~gh~~~via~DG~~v~---P~~~d~l~l~pGeR~dv~v~~~~---~~g~y~i~~~~~ 285 (535)
|+|.+....+.||||++.|+|++.||.+.. +-++|++.+.+ ++++++++++. .+|.|++|||..
T Consensus 440 i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL 509 (523)
T PRK10965 440 ISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLL 509 (523)
T ss_pred EEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCch
Confidence 999986555679999999999999999875 35789999977 88999999984 247999999964
No 25
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.44 E-value=1.1e-12 Score=112.07 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=81.8
Q ss_pred HHHHhcccccceeEEEEEEEE--EEee---eccCCceeEE-EECCCCCCcEEEEecCCEEEEEEEECCCCCc--eEEeCC
Q 009392 11 VACLFPALVECRVRHYKFNVV--MKNS---TKLCSSKPIV-TVNRKFPGPTLYAREHDTVLVKVVNHVKYNV--TIHWHG 82 (535)
Q Consensus 11 ~~~~~~~~~~~~~~~~~l~~~--~~~~---~~~g~~~~~~-~~NG~~pgP~i~~~~Gd~v~v~v~N~l~~~t--~iH~HG 82 (535)
+-+|..+.+.+..|+|+++|. +..+ +..|+....+ .+|+++..+.|+|++||+|++++.|..+.+. ++++||
T Consensus 12 ~~~~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~g 91 (135)
T TIGR03096 12 LGLLLMGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAYG 91 (135)
T ss_pred HHHhhccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCCC
Confidence 334455556788999999999 5555 4567776655 9999999899999999999999999976543 333333
Q ss_pred cccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChhhhh
Q 009392 83 VRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHILWLR 131 (535)
Q Consensus 83 ~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~ 131 (535)
+ +..|+||++.+|+|.+ .++|+|||||-.+...
T Consensus 92 i---------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~~ 124 (135)
T TIGR03096 92 I---------------SEVIKAGETKTISFKA-DKAGAFTIWCQLHPKN 124 (135)
T ss_pred c---------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCCChh
Confidence 2 1458999999999998 8999999999877543
No 26
>PLN02835 oxidoreductase
Probab=99.41 E-value=8.7e-12 Score=133.59 Aligned_cols=239 Identities=14% Similarity=0.104 Sum_probs=146.3
Q ss_pred eeEEEECCCCCCcEEEEecCCEEEEEEEECCC-CCceEEeCCcccCCCCCCCCCCC----cccCcCCCCCeEEEEEEeCC
Q 009392 42 KPIVTVNRKFPGPTLYAREHDTVLVKVVNHVK-YNVTIHWHGVRQLRTGWADGPAY----ITQCPIQSGHSYVYNFTITG 116 (535)
Q Consensus 42 ~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~-~~t~iH~HG~~~~~~~~~DGvp~----~tq~~i~PG~~~~Y~~~~~~ 116 (535)
...+++||+. .|++++++|+++|+|+.|... ....+|..|....-.. .||.+- +....|.||||++..+++++
T Consensus 191 ~d~~liNG~~-~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~-~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQT-QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVE-VEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEcccc-CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEE-ECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 4579999996 489999999999999999985 5688899887764332 788643 23456999999999999965
Q ss_pred CCcceeEecChhhhh--cccEEEEEEeCCCC-CCCCCCC---CCc--e------EEEEEEeeccCChH---HHHHHHH-h
Q 009392 117 QRGTLLWHAHILWLR--ATVHGAIVILPKRG-VPYPFPK---PHK--E------VVVVLAEWWKSDTE---AVINQAL-Q 178 (535)
Q Consensus 117 ~~Gt~wYH~H~~~~~--~Gl~G~iiV~~~~~-~~~~~~~---~~~--e------~~l~~~d~~~~~~~---~~~~~~~-~ 178 (535)
.+|.||...-..... ....+.+--++... ...+.+. .+. + ....+......... ....... .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 679999986321111 12223333322211 0001110 000 0 00000000000000 0000000 0
Q ss_pred C-----CCCC--CCCceEEEcCccCCC---------------CCCCC------------CCceeEEEeCCCEEEEEEEEc
Q 009392 179 S-----GLAP--NVSDSHTINGQPGPI---------------SSCSS------------QGGFTLPVDSGKTYMLRIINA 224 (535)
Q Consensus 179 ~-----g~~~--~~~~~~liNG~~~~~---------------~~~~~------------~~~~~~~v~~G~~~rlRliN~ 224 (535)
. .... .....+.+||..+.. .-|.. ...-.+.++.|+++.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 0 0000 001357788876421 00100 011245677889999999998
Q ss_pred CCCceEEEEEcCceeEEEEe-CCcc----------cceeEeceEEeCCCceEEEEEEeCCCCceeEEEeec
Q 009392 225 ALNEELFFKIAGHKLTVVEV-DATY----------VKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASP 284 (535)
Q Consensus 225 ~~~~~~~~~i~gh~~~via~-DG~~----------v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~ 284 (535)
+... +.||+|||+|+|++. +|.+ ..|...|++.+.++...-+.+++|+ ||.|.+|||.
T Consensus 429 ~~~~-HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDN-PG~Wl~HCHi 497 (539)
T PLN02835 429 EKTM-QSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDN-QGMWNMRSAI 497 (539)
T ss_pred CCCC-CCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcC-CEEeeeeecc
Confidence 7554 459999999999987 5522 2489999999999999999999998 8999999996
No 27
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.36 E-value=1.2e-10 Score=125.75 Aligned_cols=241 Identities=14% Similarity=0.133 Sum_probs=143.8
Q ss_pred eEEEECCCC-C--------CcEEEEecCCEEEEEEEECCC-CCceEEeCCcccCCCCCCCCCCC----cccCcCCCCCeE
Q 009392 43 PIVTVNRKF-P--------GPTLYAREHDTVLVKVVNHVK-YNVTIHWHGVRQLRTGWADGPAY----ITQCPIQSGHSY 108 (535)
Q Consensus 43 ~~~~~NG~~-p--------gP~i~~~~Gd~v~v~v~N~l~-~~t~iH~HG~~~~~~~~~DGvp~----~tq~~i~PG~~~ 108 (535)
..+++||+. + .++|++++|+++++|++|... ....+|.+|....-.. .||++- +....|.||||+
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa-~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVE-VDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEE-eCCcccCceEeCeEEecCCCEE
Confidence 468999984 1 148999999999999999974 5577888887654332 788742 234668999999
Q ss_pred EEEEEeCCCCcceeEecChhh--h---h-cccEEEEEEeCCCCCCCCCCC---CCceE-----------EEEEEeecc--
Q 009392 109 VYNFTITGQRGTLLWHAHILW--L---R-ATVHGAIVILPKRGVPYPFPK---PHKEV-----------VVVLAEWWK-- 166 (535)
Q Consensus 109 ~Y~~~~~~~~Gt~wYH~H~~~--~---~-~Gl~G~iiV~~~~~~~~~~~~---~~~e~-----------~l~~~d~~~-- 166 (535)
+..+++++.+|.||.+++... + . ..-.+.|...+......+... ...+. .+....+..
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 999998555899999987431 1 1 112233333332211111000 00000 000000000
Q ss_pred -CChHH----HHHHHHhCCC-----CC-CCCceEEEcCccCCC---------------------------CCCCC-C---
Q 009392 167 -SDTEA----VINQALQSGL-----AP-NVSDSHTINGQPGPI---------------------------SSCSS-Q--- 204 (535)
Q Consensus 167 -~~~~~----~~~~~~~~g~-----~~-~~~~~~liNG~~~~~---------------------------~~~~~-~--- 204 (535)
..... .+........ .. ...-.+.|||+.... .-|.. .
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 00000 0000000000 00 001235677764210 00100 0
Q ss_pred -------CceeEEEeCCCEEEEEEEEcCC--CceEEEEEcCceeEEEEeC-Ccc-----------cceeEeceEEeCCCc
Q 009392 205 -------GGFTLPVDSGKTYMLRIINAAL--NEELFFKIAGHKLTVVEVD-ATY-----------VKPFKTDNIVIAPGQ 263 (535)
Q Consensus 205 -------~~~~~~v~~G~~~rlRliN~~~--~~~~~~~i~gh~~~via~D-G~~-----------v~P~~~d~l~l~pGe 263 (535)
....+.++.|+++++.|.|.+. ...+.||+|||+|+|++.+ |.+ ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 1135788899999999999853 2256699999999999886 321 237788999999999
Q ss_pred eEEEEEEeCCCCceeEEEeecC
Q 009392 264 TTNVLLSADKTSGKYLVAASPF 285 (535)
Q Consensus 264 R~dv~v~~~~~~g~y~i~~~~~ 285 (535)
-+-+.+++++ ||.|.+|||..
T Consensus 486 ~vvirf~adN-PG~W~~HCHi~ 506 (539)
T TIGR03389 486 WAAIRFVADN-PGVWFMHCHLE 506 (539)
T ss_pred eEEEEEecCC-CeEEEEEeccc
Confidence 9999999998 89999999963
No 28
>PRK10883 FtsI repressor; Provisional
Probab=99.33 E-value=7.5e-11 Score=124.81 Aligned_cols=220 Identities=13% Similarity=0.099 Sum_probs=133.1
Q ss_pred CceeEEEECCCCCCcEEEEecCCEEEEEEEECCC-CCceEEe-CCcccCCCCCCCCCCC-----cccCcCCCCCeEEEEE
Q 009392 40 SSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHVK-YNVTIHW-HGVRQLRTGWADGPAY-----ITQCPIQSGHSYVYNF 112 (535)
Q Consensus 40 ~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~-~~t~iH~-HG~~~~~~~~~DGvp~-----~tq~~i~PG~~~~Y~~ 112 (535)
.....+++||+. .|.|.|+.| ++|+|+.|... ....+++ +|....-.. .||-+. +++..|.|||+++.-.
T Consensus 207 ~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa-~DGg~~~~P~~~~~l~l~pGeR~dvlV 283 (471)
T PRK10883 207 FVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIA-GDQGFLPAPVSVKQLSLAPGERREILV 283 (471)
T ss_pred ccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEE-eCCCcccCCcEeCeEEECCCCeEEEEE
Confidence 345679999995 699999875 89999999985 5577887 564322222 685322 3456689999999999
Q ss_pred EeCCCCcceeEecChhhhh-cccEE------------EEEEeCCCCCCCCCCCCCceEEEEEEe--eccCChHHHHHHHH
Q 009392 113 TITGQRGTLLWHAHILWLR-ATVHG------------AIVILPKRGVPYPFPKPHKEVVVVLAE--WWKSDTEAVINQAL 177 (535)
Q Consensus 113 ~~~~~~Gt~wYH~H~~~~~-~Gl~G------------~iiV~~~~~~~~~~~~~~~e~~l~~~d--~~~~~~~~~~~~~~ 177 (535)
++ .+.+.+.+++-..... ..+.+ .+-++....... . ....+..+.. .......... + .
T Consensus 284 d~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~p~~l~~~~~~~~~~~~~~-~-~ 356 (471)
T PRK10883 284 DM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPL-V---TDNLPMRLLPDEIMEGSPIRSR-E-I 356 (471)
T ss_pred EC-CCCceEEEECCCccccccccccccCCccccccceeEEEEccccccC-C---CCcCChhhcCCCCCCCCCcceE-E-E
Confidence 98 5556777666321100 11111 111111110000 0 0000000000 0000000000 0 0
Q ss_pred hCCCCCCCCceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccce---eEe
Q 009392 178 QSGLAPNVSDSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKP---FKT 254 (535)
Q Consensus 178 ~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P---~~~ 254 (535)
.- ..+.++|||+.+. ...+.++++.|++.+|+|.|.. .+.||||+|.|+|++.||....| -+.
T Consensus 357 ~l-----~~~~~~INg~~~~------~~~~~~~~~~g~~e~W~~~n~~---~HP~HlHg~~FqVl~~~G~~~~~~~~gwk 422 (471)
T PRK10883 357 SL-----GDDLPGINGALWD------MNRIDVTAQQGTWERWTVRADM---PQAFHIEGVMFLIRNVNGAMPFPEDRGWK 422 (471)
T ss_pred Ee-----cCCcCccCCcccC------CCcceeecCCCCEEEEEEECCC---CcCEeECCccEEEEEecCCCCCccccCcC
Confidence 00 0123469999752 1224578999999999998873 35699999999999999986544 457
Q ss_pred ceEEeCCCceEEEEEEeCCCCc---eeEEEeecC
Q 009392 255 DNIVIAPGQTTNVLLSADKTSG---KYLVAASPF 285 (535)
Q Consensus 255 d~l~l~pGeR~dv~v~~~~~~g---~y~i~~~~~ 285 (535)
|++.+. +++.+++++++..| .|++|||..
T Consensus 423 DTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiL 454 (471)
T PRK10883 423 DTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTL 454 (471)
T ss_pred cEEEcC--CeEEEEEEecCCCCCCCcEEeecccc
Confidence 999993 57999999997444 799999964
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.22 E-value=2.3e-10 Score=121.35 Aligned_cols=233 Identities=18% Similarity=0.137 Sum_probs=147.7
Q ss_pred cCCceeEEEECCCCCCcEEEEecCCEEEEEEEECC-CCCceEEeCCcccCCCCCCCCCC----CcccCcCCCCCeEEEEE
Q 009392 38 LCSSKPIVTVNRKFPGPTLYAREHDTVLVKVVNHV-KYNVTIHWHGVRQLRTGWADGPA----YITQCPIQSGHSYVYNF 112 (535)
Q Consensus 38 ~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l-~~~t~iH~HG~~~~~~~~~DGvp----~~tq~~i~PG~~~~Y~~ 112 (535)
.|..+....+||+. .|.+ +.++..+++|+.|.. .....+++.|....-.. .||.+ .+.+..+.|||+++...
T Consensus 185 ~~~~g~~~~vnG~~-~p~~-~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~-~DG~~v~~~~~d~~~l~p~er~~v~v 261 (451)
T COG2132 185 GGFPGDTLLVNGAI-LPFK-AVPGGVVRLRLLNAGNARTYHLALGGGPLTVIA-VDGGPLPPVSVDELYLAPGERYEVLV 261 (451)
T ss_pred cCCCCCeEEECCCc-ccee-ecCCCeEEEEEEecCCceEEEEEecCceEEEEE-eCCcCcCceeeeeEEecCcceEEEEE
Confidence 35667788899954 2544 455555999999998 66677777765544332 57755 46678899999999999
Q ss_pred EeCCCCcceeEecChhhhhcccEEEEEEeCCCCCCCCC-------CCCC---ceEEEEEEeeccCChHHHHHHHHhCCCC
Q 009392 113 TITGQRGTLLWHAHILWLRATVHGAIVILPKRGVPYPF-------PKPH---KEVVVVLAEWWKSDTEAVINQALQSGLA 182 (535)
Q Consensus 113 ~~~~~~Gt~wYH~H~~~~~~Gl~G~iiV~~~~~~~~~~-------~~~~---~e~~l~~~d~~~~~~~~~~~~~~~~g~~ 182 (535)
+. ...|++-+.+......+-+.+..-.........+. ...+ ......................... .
T Consensus 262 ~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~ 338 (451)
T COG2132 262 DM-NDGGAVTLTALGEDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLI--G 338 (451)
T ss_pred Ec-CCCCeEEEEeccccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccccchhh--c
Confidence 98 55788888887722112222322222211111000 0011 1111111111111110000000000 0
Q ss_pred CCCCceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCccc---ceeEeceEEe
Q 009392 183 PNVSDSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYV---KPFKTDNIVI 259 (535)
Q Consensus 183 ~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v---~P~~~d~l~l 259 (535)
......+.+||+..+. ....+.++.|+++||+|.|-+. -.+.||+||+.|.|++.| ... .+..+|++.+
T Consensus 339 ~~~~~~~~~n~~~~~~------~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v 410 (451)
T COG2132 339 GIGGYVWAINGKAFDD------NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLV 410 (451)
T ss_pred ccccccccccCccCCC------CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEe
Confidence 1123568888886521 2477899999999999999998 445599999999999999 332 3578999999
Q ss_pred CCCceEEEEEEeCCCCceeEEEeecC
Q 009392 260 APGQTTNVLLSADKTSGKYLVAASPF 285 (535)
Q Consensus 260 ~pGeR~dv~v~~~~~~g~y~i~~~~~ 285 (535)
.|++|+.+.++++. +|.|++|||..
T Consensus 411 ~~~~~~~v~~~a~~-~g~~~~HCH~l 435 (451)
T COG2132 411 APGERLLVRFDADY-PGPWMFHCHIL 435 (451)
T ss_pred CCCeEEEEEEeCCC-CCceEEeccch
Confidence 99999999999997 78999999963
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=99.14 E-value=2.8e-09 Score=114.14 Aligned_cols=238 Identities=15% Similarity=0.162 Sum_probs=142.7
Q ss_pred eeEEEECCCCC-CcEEEEecCCEEEEEEEECCC-CCceEEeCCcccCCCCCCCCCCC----cccCcCCCCCeEEEEEEeC
Q 009392 42 KPIVTVNRKFP-GPTLYAREHDTVLVKVVNHVK-YNVTIHWHGVRQLRTGWADGPAY----ITQCPIQSGHSYVYNFTIT 115 (535)
Q Consensus 42 ~~~~~~NG~~p-gP~i~~~~Gd~v~v~v~N~l~-~~t~iH~HG~~~~~~~~~DGvp~----~tq~~i~PG~~~~Y~~~~~ 115 (535)
...+++||+.+ .|+|++++|+++|+|+.|... ....++..|....-.. .||.+- +.+..|.||||++..++++
T Consensus 188 ~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydvlv~a~ 266 (545)
T PLN02168 188 PDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVE-TEGTYVQKRVYSSLDIHVGQSYSVLVTAK 266 (545)
T ss_pred CCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEE-ECCeECCCceeeEEEEcCCceEEEEEEcC
Confidence 35689999952 479999999999999999974 4577888786654433 788532 3356699999999999994
Q ss_pred CCC-c---ceeEecChhh--hh-cccEEEEEEeCCCCCC--CCCCC--CCceE------EEEEE-eec----cCChH--H
Q 009392 116 GQR-G---TLLWHAHILW--LR-ATVHGAIVILPKRGVP--YPFPK--PHKEV------VVVLA-EWW----KSDTE--A 171 (535)
Q Consensus 116 ~~~-G---t~wYH~H~~~--~~-~Gl~G~iiV~~~~~~~--~~~~~--~~~e~------~l~~~-d~~----~~~~~--~ 171 (535)
+++ | .||...-... +. .+ . +++..+..... .|.+. ...+. .+.+. ... ..... .
T Consensus 267 ~~~~g~~~~Y~i~a~~~~~~~~~~~-~-ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~ 344 (545)
T PLN02168 267 TDPVGIYRSYYIVATARFTDAYLGG-V-ALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSY 344 (545)
T ss_pred CCCCCCcceEEEEEEecccCCCcce-E-EEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccc
Confidence 343 4 8998876421 11 22 2 33333322111 11110 00000 00000 000 00000 0
Q ss_pred -H----HHHHH-hCCCC--CCCCceEEEcCccCCC----------CC---C-CCC-------------CceeEEEeCCCE
Q 009392 172 -V----INQAL-QSGLA--PNVSDSHTINGQPGPI----------SS---C-SSQ-------------GGFTLPVDSGKT 216 (535)
Q Consensus 172 -~----~~~~~-~~g~~--~~~~~~~liNG~~~~~----------~~---~-~~~-------------~~~~~~v~~G~~ 216 (535)
. ..... ..... ......+.|||..+.. +. + ..+ ..-.+.++.|++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~ 424 (545)
T PLN02168 345 HYGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDF 424 (545)
T ss_pred cccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCE
Confidence 0 00000 00000 0001346788876421 00 0 000 122467888999
Q ss_pred EEEEEEEcCCCceEEEEEcCceeEEEEe-----CC------cccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeec
Q 009392 217 YMLRIINAALNEELFFKIAGHKLTVVEV-----DA------TYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASP 284 (535)
Q Consensus 217 ~rlRliN~~~~~~~~~~i~gh~~~via~-----DG------~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~ 284 (535)
+.+=|-|.... .+.||+|||+|+|++. |+ ++..|...|++.+.++.=.-+.+++|+ ||.|.+|||.
T Consensus 425 VeiViqn~~~~-~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PG~Wl~HCHi 501 (545)
T PLN02168 425 YHIVFQNPLFS-LESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDN-QGMWNVRSQK 501 (545)
T ss_pred EEEEEeCCCCC-CCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccC-CeEEeeeecC
Confidence 98888887644 4559999999999976 21 224688999999999999999999998 8999999995
No 31
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.14 E-value=5e-09 Score=113.25 Aligned_cols=229 Identities=15% Similarity=0.109 Sum_probs=133.6
Q ss_pred EEEEecCCEEEEEEEECC-CCCceEEeCCcccCCCCCCCCCCC----cccCcCCCCCeEEEEEEeCCCC-cceeEecChh
Q 009392 55 TLYAREHDTVLVKVVNHV-KYNVTIHWHGVRQLRTGWADGPAY----ITQCPIQSGHSYVYNFTITGQR-GTLLWHAHIL 128 (535)
Q Consensus 55 ~i~~~~Gd~v~v~v~N~l-~~~t~iH~HG~~~~~~~~~DGvp~----~tq~~i~PG~~~~Y~~~~~~~~-Gt~wYH~H~~ 128 (535)
+|.|++|+++|+|++|.. .....++++|....-.. .||.+- +....|.||||++..++++..+ |.||.+.-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa-~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVE-ADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEEEE-eCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 589999999999999986 46677777776654332 688542 3345689999999999984334 5899987543
Q ss_pred hhh--cccEEEEEEeCCCCC-CCC-C-----CCCCc-------eEEEEEEeeccCChHHHHHH--HHhCCCCCCCCceEE
Q 009392 129 WLR--ATVHGAIVILPKRGV-PYP-F-----PKPHK-------EVVVVLAEWWKSDTEAVINQ--ALQSGLAPNVSDSHT 190 (535)
Q Consensus 129 ~~~--~Gl~G~iiV~~~~~~-~~~-~-----~~~~~-------e~~l~~~d~~~~~~~~~~~~--~~~~g~~~~~~~~~l 190 (535)
.+. .....+++....... ..+ . +..+. +..++-..-........-.. ....+........+.
T Consensus 283 ~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (541)
T TIGR03388 283 GRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWA 362 (541)
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEEE
Confidence 331 111124444332111 100 0 00000 00000000000000000000 000000000112366
Q ss_pred EcCccCCC-------------------------CC-------CCC-----CCceeEEEeCCCEEEEEEEEcCC-----Cc
Q 009392 191 INGQPGPI-------------------------SS-------CSS-----QGGFTLPVDSGKTYMLRIINAAL-----NE 228 (535)
Q Consensus 191 iNG~~~~~-------------------------~~-------~~~-----~~~~~~~v~~G~~~rlRliN~~~-----~~ 228 (535)
+||..+.. +. |.. ...-.+.++.|+++.+.|.|... ..
T Consensus 363 ~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~ 442 (541)
T TIGR03388 363 INNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSE 442 (541)
T ss_pred ECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCC
Confidence 77765320 00 000 01134788899999999999752 23
Q ss_pred eEEEEEcCceeEEEEeC-Ccc-----------cceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecC
Q 009392 229 ELFFKIAGHKLTVVEVD-ATY-----------VKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPF 285 (535)
Q Consensus 229 ~~~~~i~gh~~~via~D-G~~-----------v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~ 285 (535)
.+.||+|||+|+|++.. |.+ ..|...|++.+.++.-+-|.+++++ ||.|.+|||..
T Consensus 443 ~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adN-PG~W~~HCHi~ 510 (541)
T TIGR03388 443 THPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADN-PGVWAFHCHIE 510 (541)
T ss_pred CCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCC-CeEeeeeccch
Confidence 56699999999999987 332 1377889999999999999999998 89999999963
No 32
>PLN02991 oxidoreductase
Probab=99.10 E-value=6.8e-09 Score=111.05 Aligned_cols=240 Identities=12% Similarity=0.079 Sum_probs=141.9
Q ss_pred eeEEEECCCCCCcEEEEecCCEEEEEEEECCC-CCceEEeCCcccCCCCCCCCCCC----cccCcCCCCCeEEEEEEeCC
Q 009392 42 KPIVTVNRKFPGPTLYAREHDTVLVKVVNHVK-YNVTIHWHGVRQLRTGWADGPAY----ITQCPIQSGHSYVYNFTITG 116 (535)
Q Consensus 42 ~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~-~~t~iH~HG~~~~~~~~~DGvp~----~tq~~i~PG~~~~Y~~~~~~ 116 (535)
...+++||+...++++|++|+++++|+.|... ....++..|....-.. .||.+- +.+..|.||||++...++++
T Consensus 190 ~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~~~p~~~~~l~i~~GQRydvlv~a~~ 268 (543)
T PLN02991 190 PDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVE-VEGTHTIQTPFSSLDVHVGQSYSVLITADQ 268 (543)
T ss_pred CCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEE-eCCccccceeeeEEEEcCCcEEEEEEECCC
Confidence 45789999965589999999999999999975 4567888887654333 788642 33566899999999999966
Q ss_pred CCcceeEecChhhhhccc--EEEEEEeCCCC-CCCCCCC--CCceEEEEEE---eec-----cCC-hHH---H--H--HH
Q 009392 117 QRGTLLWHAHILWLRATV--HGAIVILPKRG-VPYPFPK--PHKEVVVVLA---EWW-----KSD-TEA---V--I--NQ 175 (535)
Q Consensus 117 ~~Gt~wYH~H~~~~~~Gl--~G~iiV~~~~~-~~~~~~~--~~~e~~l~~~---d~~-----~~~-~~~---~--~--~~ 175 (535)
..|.||.-.-.......+ .+.|--++... ...+.+. .+.+...-.. +.. ... ... . . ..
T Consensus 269 ~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~ 348 (543)
T PLN02991 269 PAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITR 348 (543)
T ss_pred CCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccce
Confidence 678999876431111111 22222222211 0001110 0000000000 000 000 000 0 0 00
Q ss_pred HH--hCCCC-CCCCceEEEcCccCCCC----------CCC-----------------CCCceeEEEeCCCEEEEEEEEcC
Q 009392 176 AL--QSGLA-PNVSDSHTINGQPGPIS----------SCS-----------------SQGGFTLPVDSGKTYMLRIINAA 225 (535)
Q Consensus 176 ~~--~~g~~-~~~~~~~liNG~~~~~~----------~~~-----------------~~~~~~~~v~~G~~~rlRliN~~ 225 (535)
.. ..+.. ....-.+.|||...... .-+ ....-.+.++.|+.+.+=|-|..
T Consensus 349 ~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~ 428 (543)
T PLN02991 349 TIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWE 428 (543)
T ss_pred eEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCC
Confidence 00 00000 00012467787754210 000 00112356677888888888865
Q ss_pred CCceEEEEEcCceeEEEEeCC-----------cccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeec
Q 009392 226 LNEELFFKIAGHKLTVVEVDA-----------TYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASP 284 (535)
Q Consensus 226 ~~~~~~~~i~gh~~~via~DG-----------~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~ 284 (535)
.. .+.||+|||+|+|++... ++..|...|++.+.++.=.-+.+++|+ ||.|.+|||.
T Consensus 429 ~~-~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PG~W~~HCHi 496 (543)
T PLN02991 429 DI-VQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDN-VGMWNLRSEL 496 (543)
T ss_pred CC-CCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCC-CEEeeeeeCc
Confidence 54 455999999999998542 123588899999999999999999998 8999999996
No 33
>PLN02354 copper ion binding / oxidoreductase
Probab=99.10 E-value=6.1e-09 Score=112.03 Aligned_cols=239 Identities=14% Similarity=0.126 Sum_probs=144.0
Q ss_pred eEEEECCCCC------CcEEEEecCCEEEEEEEECC-CCCceEEeCCcccCCCCCCCCCCC----cccCcCCCCCeEEEE
Q 009392 43 PIVTVNRKFP------GPTLYAREHDTVLVKVVNHV-KYNVTIHWHGVRQLRTGWADGPAY----ITQCPIQSGHSYVYN 111 (535)
Q Consensus 43 ~~~~~NG~~p------gP~i~~~~Gd~v~v~v~N~l-~~~t~iH~HG~~~~~~~~~DGvp~----~tq~~i~PG~~~~Y~ 111 (535)
..++|||+-. -|+|++++|.+.++|+.|.. .....+|..|....-.. .||++- +....|.||||++..
T Consensus 190 d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydVl 268 (552)
T PLN02354 190 DGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVE-MEGSHVLQNDYDSLDVHVGQCFSVL 268 (552)
T ss_pred CeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEE-eCCcccCCcceeEEEEccCceEEEE
Confidence 4689999841 37999999999999999997 45678888887754332 799652 334569999999999
Q ss_pred EEeCCCCcceeEecChhhhh--cccEEEEEEeCCCCCC-CCCCCCCceEEEEE---Eeecc-------CC---hHHH---
Q 009392 112 FTITGQRGTLLWHAHILWLR--ATVHGAIVILPKRGVP-YPFPKPHKEVVVVL---AEWWK-------SD---TEAV--- 172 (535)
Q Consensus 112 ~~~~~~~Gt~wYH~H~~~~~--~Gl~G~iiV~~~~~~~-~~~~~~~~e~~l~~---~d~~~-------~~---~~~~--- 172 (535)
+++++.+|.||..+...... ....+.|...+..... ...+....+..... .+... .. ....
T Consensus 269 v~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 348 (552)
T PLN02354 269 VTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGK 348 (552)
T ss_pred EECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCcccccc
Confidence 99965689999998743211 1223333333321110 00110000000000 00000 00 0000
Q ss_pred H--HHH--HhCCCCC-CCCceEEEcCccCCCC--------------C--C------------C--CCCceeEEEeCCCEE
Q 009392 173 I--NQA--LQSGLAP-NVSDSHTINGQPGPIS--------------S--C------------S--SQGGFTLPVDSGKTY 217 (535)
Q Consensus 173 ~--~~~--~~~g~~~-~~~~~~liNG~~~~~~--------------~--~------------~--~~~~~~~~v~~G~~~ 217 (535)
. ... ....... .....+.|||..+... + + . ....-.+.++.|+++
T Consensus 349 ~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~V 428 (552)
T PLN02354 349 INITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFV 428 (552)
T ss_pred ccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEE
Confidence 0 000 0000000 0012467787653200 0 0 0 001124677788999
Q ss_pred EEEEEEcCCCceEEEEEcCceeEEEEeCCc-----------ccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeec
Q 009392 218 MLRIINAALNEELFFKIAGHKLTVVEVDAT-----------YVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASP 284 (535)
Q Consensus 218 rlRliN~~~~~~~~~~i~gh~~~via~DG~-----------~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~ 284 (535)
.+=|.|.... .+.||+|||+|+|++.--+ ...|...|++.+.++.=.=+.+++|+ ||.|.+|||.
T Consensus 429 eiVi~n~~~~-~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PGvW~~HCHi 504 (552)
T PLN02354 429 EIIFENHEKS-MQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDN-AGMWNIRSEN 504 (552)
T ss_pred EEEEeCCCCC-CCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecC-CeEEeeeccc
Confidence 9999998644 4559999999999976421 13588999999999999999999998 8999999996
No 34
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.10 E-value=3.4e-09 Score=114.20 Aligned_cols=241 Identities=13% Similarity=0.099 Sum_probs=139.6
Q ss_pred eEEEECCCC---------------CCcEEEEecCCEEEEEEEECCC-CCceEEeCCcc-cCCCCCCCCCCC----cccCc
Q 009392 43 PIVTVNRKF---------------PGPTLYAREHDTVLVKVVNHVK-YNVTIHWHGVR-QLRTGWADGPAY----ITQCP 101 (535)
Q Consensus 43 ~~~~~NG~~---------------pgP~i~~~~Gd~v~v~v~N~l~-~~t~iH~HG~~-~~~~~~~DGvp~----~tq~~ 101 (535)
..+++||+. ..|+|++++|+++++|+.|... ....+++.|.. ..-.. .||.+- +....
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa-~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE-ADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE-eCCCCCCceEeCeEE
Confidence 468899983 1278999999999999999975 34677777765 33222 788642 22455
Q ss_pred CCCCCeEEEEEEeCCC-------CcceeEecChhh--hhcccEEEEEEeCCCCCCCC---CC---CC------CceEEEE
Q 009392 102 IQSGHSYVYNFTITGQ-------RGTLLWHAHILW--LRATVHGAIVILPKRGVPYP---FP---KP------HKEVVVV 160 (535)
Q Consensus 102 i~PG~~~~Y~~~~~~~-------~Gt~wYH~H~~~--~~~Gl~G~iiV~~~~~~~~~---~~---~~------~~e~~l~ 160 (535)
|.||||++..+++++. +|-||...-... +.....+.|.-++......+ .. .. ..+..+.
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~ 330 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYELE 330 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheeeE
Confidence 8999999999999432 489998764221 11112333333222111111 00 00 0111111
Q ss_pred -EEee-----cc-CChHHHHHHHHhCCCCC-CCCceEEEcCccCCC-----------CC----C------------CCCC
Q 009392 161 -LAEW-----WK-SDTEAVINQALQSGLAP-NVSDSHTINGQPGPI-----------SS----C------------SSQG 205 (535)
Q Consensus 161 -~~d~-----~~-~~~~~~~~~~~~~g~~~-~~~~~~liNG~~~~~-----------~~----~------------~~~~ 205 (535)
+..- .. ......+.-........ .....+++||..... +. . ....
T Consensus 331 pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
T TIGR03390 331 PLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDPE 410 (538)
T ss_pred ecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCcC
Confidence 0000 00 00000000000000000 011357788875421 00 0 0001
Q ss_pred ceeEEEeCCCEEEEEEEEcC-------CCceEEEEEcCceeEEEEe-CCcc-----------cceeEeceEEeC------
Q 009392 206 GFTLPVDSGKTYMLRIINAA-------LNEELFFKIAGHKLTVVEV-DATY-----------VKPFKTDNIVIA------ 260 (535)
Q Consensus 206 ~~~~~v~~G~~~rlRliN~~-------~~~~~~~~i~gh~~~via~-DG~~-----------v~P~~~d~l~l~------ 260 (535)
.-.+.++.|+++++.|.|.. ....+.||+|||+|+||+. +|.+ ..|...|++.+.
T Consensus 411 ~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~ 490 (538)
T TIGR03390 411 TRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKV 490 (538)
T ss_pred ceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccc
Confidence 12467888999999999974 2345669999999999985 4533 248889999983
Q ss_pred ----CCceEEEEEEeCCCCceeEEEeecC
Q 009392 261 ----PGQTTNVLLSADKTSGKYLVAASPF 285 (535)
Q Consensus 261 ----pGeR~dv~v~~~~~~g~y~i~~~~~ 285 (535)
++.-.-|.+++++ ||.|.||||..
T Consensus 491 ~~~~~~~~~~ir~~~dN-PG~W~~HCHi~ 518 (538)
T TIGR03390 491 VPGAPAGWRAWRIRVTN-PGVWMMHCHIL 518 (538)
T ss_pred cccCCCceEEEEEEcCC-CeeEEEeccch
Confidence 7788889999997 89999999963
No 35
>PLN02604 oxidoreductase
Probab=99.07 E-value=3.6e-09 Score=114.69 Aligned_cols=226 Identities=15% Similarity=0.139 Sum_probs=133.1
Q ss_pred cEEEEecCCEEEEEEEECCC-CCceEEeCCcccCCCCCCCCCCC----cccCcCCCCCeEEEEEEeCCCCc-ceeEecCh
Q 009392 54 PTLYAREHDTVLVKVVNHVK-YNVTIHWHGVRQLRTGWADGPAY----ITQCPIQSGHSYVYNFTITGQRG-TLLWHAHI 127 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N~l~-~~t~iH~HG~~~~~~~~~DGvp~----~tq~~i~PG~~~~Y~~~~~~~~G-t~wYH~H~ 127 (535)
++|.+++|.++++|++|... ....++..|....-.. .||.+- +....|.||||++..+++++.+| .||..+..
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa-~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVE-ADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEE-eCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 48999999999999999974 4666777776543332 688543 33456899999999999844445 79998653
Q ss_pred hhh---h-cccEEEEEEeCCCC--CCCCCCCC----CceEEEEEEeec---------cCCh---HHHHHHHHhCCCCCCC
Q 009392 128 LWL---R-ATVHGAIVILPKRG--VPYPFPKP----HKEVVVVLAEWW---------KSDT---EAVINQALQSGLAPNV 185 (535)
Q Consensus 128 ~~~---~-~Gl~G~iiV~~~~~--~~~~~~~~----~~e~~l~~~d~~---------~~~~---~~~~~~~~~~g~~~~~ 185 (535)
... . .|+ +|+...... ...+.... ..+....+.... .... ..... ..........
T Consensus 303 ~~~~~~~~~~~--aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~ 379 (566)
T PLN02604 303 VSRNNTTPPGL--AIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIV-LLNTQNEVNG 379 (566)
T ss_pred ccCCCCCccee--EEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEE-EeccccccCC
Confidence 221 1 232 233322211 11010000 000000000000 0000 00000 0000000001
Q ss_pred CceEEEcCccCCCC---------------CCCC-----------------------CCceeEEEeCCCEEEEEEEEcCC-
Q 009392 186 SDSHTINGQPGPIS---------------SCSS-----------------------QGGFTLPVDSGKTYMLRIINAAL- 226 (535)
Q Consensus 186 ~~~~liNG~~~~~~---------------~~~~-----------------------~~~~~~~v~~G~~~rlRliN~~~- 226 (535)
...+.|||...... -|.. .....+.++.|+++.+.|.|...
T Consensus 380 ~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~ 459 (566)
T PLN02604 380 YRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTM 459 (566)
T ss_pred eEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccc
Confidence 13577787653210 0100 01124788899999999999852
Q ss_pred ----CceEEEEEcCceeEEEEeC-Ccc-----------cceeEeceEEeCCCceEEEEEEeCCCCceeEEEeec
Q 009392 227 ----NEELFFKIAGHKLTVVEVD-ATY-----------VKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASP 284 (535)
Q Consensus 227 ----~~~~~~~i~gh~~~via~D-G~~-----------v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~ 284 (535)
...+.||+|||+|+|++.. |.+ ..|...|++.+.++.-.-|.+++|+ ||.|.||||.
T Consensus 460 ~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDN-PG~WlfHCHI 532 (566)
T PLN02604 460 NANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADN-PGVWAFHCHI 532 (566)
T ss_pred cCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCC-CeEeeEeecc
Confidence 2356699999999999987 432 1377889999999999999999998 8999999995
No 36
>PLN02792 oxidoreductase
Probab=99.04 E-value=2.2e-08 Score=107.23 Aligned_cols=241 Identities=12% Similarity=0.072 Sum_probs=143.2
Q ss_pred ceeEEEECCCC--CCcEEEEecCCEEEEEEEECCC-CCceEEeCCcccCCCCCCCCCCC----cccCcCCCCCeEEEEEE
Q 009392 41 SKPIVTVNRKF--PGPTLYAREHDTVLVKVVNHVK-YNVTIHWHGVRQLRTGWADGPAY----ITQCPIQSGHSYVYNFT 113 (535)
Q Consensus 41 ~~~~~~~NG~~--pgP~i~~~~Gd~v~v~v~N~l~-~~t~iH~HG~~~~~~~~~DGvp~----~tq~~i~PG~~~~Y~~~ 113 (535)
....+++||+- ..++|.+++|+++++|+.|... ....++..|....-.. .||.+- ++...|.||||++..++
T Consensus 178 ~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~-~DG~~v~p~~~~~l~i~~GqRydVlV~ 256 (536)
T PLN02792 178 MPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIE-VEGTHTVQSMYTSLDIHVGQTYSVLVT 256 (536)
T ss_pred CCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEE-eCCccCCCcceeEEEEccCceEEEEEE
Confidence 34679999983 2478999999999999999974 4578888887654332 788642 23466999999999999
Q ss_pred eCCCCcceeEecChhhhhcccEE-EEEEeCCCCCCC---C-CCCC-CceEEEEE---EeeccC------ChH---HH--H
Q 009392 114 ITGQRGTLLWHAHILWLRATVHG-AIVILPKRGVPY---P-FPKP-HKEVVVVL---AEWWKS------DTE---AV--I 173 (535)
Q Consensus 114 ~~~~~Gt~wYH~H~~~~~~Gl~G-~iiV~~~~~~~~---~-~~~~-~~e~~l~~---~d~~~~------~~~---~~--~ 173 (535)
+++.+|.||...-.......+.+ +|+-........ + .+.. +.....-. .+.... ... .. +
T Consensus 257 a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 336 (536)
T PLN02792 257 MDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKM 336 (536)
T ss_pred cCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCccccccee
Confidence 95567999988764211111122 333332221110 0 0000 00000000 000000 000 00 0
Q ss_pred H--HHH--hCC-CCCCCCceEEEcCccCCC----------C---CC-C----CC----------CceeEEEeCCCEEEEE
Q 009392 174 N--QAL--QSG-LAPNVSDSHTINGQPGPI----------S---SC-S----SQ----------GGFTLPVDSGKTYMLR 220 (535)
Q Consensus 174 ~--~~~--~~g-~~~~~~~~~liNG~~~~~----------~---~~-~----~~----------~~~~~~v~~G~~~rlR 220 (535)
. ... ..+ ......-.+.|||..+.. + .. + .. ....+.++.|+++.+=
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiV 416 (536)
T PLN02792 337 KISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEII 416 (536)
T ss_pred ccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEE
Confidence 0 000 000 000001245678775420 0 00 0 00 1234678889999999
Q ss_pred EEEcCCCceEEEEEcCceeEEEEeC-C----------cccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeec
Q 009392 221 IINAALNEELFFKIAGHKLTVVEVD-A----------TYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASP 284 (535)
Q Consensus 221 liN~~~~~~~~~~i~gh~~~via~D-G----------~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~ 284 (535)
|-|..... +.||+|||+|+||+.. | +++.|...|++.+.++.=.-+.+.+|+ ||.|.+|||.
T Consensus 417 iqn~~~~~-HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDN-PGvW~~HCh~ 489 (536)
T PLN02792 417 FQNREKIV-QSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDN-VGMWNLRSQF 489 (536)
T ss_pred EECCCCCC-CCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeC-CEEEeeeEcc
Confidence 99865443 5599999999999742 1 123588999999999999999999998 8999999985
No 37
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.91 E-value=1.2e-08 Score=90.08 Aligned_cols=79 Identities=19% Similarity=0.284 Sum_probs=71.3
Q ss_pred CceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCccc-----------ceeEeceEEeCCCceEEEEEEeCC
Q 009392 205 GGFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYV-----------KPFKTDNIVIAPGQTTNVLLSADK 273 (535)
Q Consensus 205 ~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v-----------~P~~~d~l~l~pGeR~dv~v~~~~ 273 (535)
....+.++.|++++|+|+|.+.. .+.||+|||.|+|++.++... .|...|++.|.+|++..+.+++++
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~ 110 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN 110 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS
T ss_pred CcceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec
Confidence 34789999999999999998866 556999999999999999884 588999999999999999999995
Q ss_pred CCceeEEEeecC
Q 009392 274 TSGKYLVAASPF 285 (535)
Q Consensus 274 ~~g~y~i~~~~~ 285 (535)
||.|.+|||..
T Consensus 111 -~G~w~~HCHi~ 121 (138)
T PF07731_consen 111 -PGPWLFHCHIL 121 (138)
T ss_dssp -TEEEEEEESSH
T ss_pred -ceEEEEEEchH
Confidence 89999999963
No 38
>PLN02191 L-ascorbate oxidase
Probab=98.89 E-value=7.2e-08 Score=104.52 Aligned_cols=236 Identities=14% Similarity=0.118 Sum_probs=133.8
Q ss_pred ECCCCCCcEEEEecCCEEEEEEEECC-CCCceEEeCCcccCCCCCCCCCCC----cccCcCCCCCeEEEEEEeCCCC-cc
Q 009392 47 VNRKFPGPTLYAREHDTVLVKVVNHV-KYNVTIHWHGVRQLRTGWADGPAY----ITQCPIQSGHSYVYNFTITGQR-GT 120 (535)
Q Consensus 47 ~NG~~pgP~i~~~~Gd~v~v~v~N~l-~~~t~iH~HG~~~~~~~~~DGvp~----~tq~~i~PG~~~~Y~~~~~~~~-Gt 120 (535)
+||+.-.++|.+++|.+.++|+.|.. .....+++.|....-.. .||.+- +....|.||||++.-++++..+ +.
T Consensus 219 ~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~ 297 (574)
T PLN02191 219 EGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVE-ADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQN 297 (574)
T ss_pred cCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEE-cCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCC
Confidence 44443223799999999999999996 45666777776654333 788653 2345689999999999985445 58
Q ss_pred eeEecChhhhh----cccEEEEEEeCCCCCCCCC------CCCCc-----eEEE-EEEeeccC-ChHHHHHHH--HhCCC
Q 009392 121 LLWHAHILWLR----ATVHGAIVILPKRGVPYPF------PKPHK-----EVVV-VLAEWWKS-DTEAVINQA--LQSGL 181 (535)
Q Consensus 121 ~wYH~H~~~~~----~Gl~G~iiV~~~~~~~~~~------~~~~~-----e~~l-~~~d~~~~-~~~~~~~~~--~~~g~ 181 (535)
||...-..... .++ +.+--........|. +..+. .... .+...... ......... .....
T Consensus 298 y~ira~~~~~~~~~~~~~-ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 376 (574)
T PLN02191 298 YYISVGVRGRKPNTTQAL-TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQN 376 (574)
T ss_pred EEEEEEccccCCCCCCce-EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecccc
Confidence 99987433211 233 222222222111010 00000 0000 00000000 000000000 00000
Q ss_pred CCCCCceEEEcCccCCCCC-----------------------------------CC--CCCceeEEEeCCCEEEEEEEEc
Q 009392 182 APNVSDSHTINGQPGPISS-----------------------------------CS--SQGGFTLPVDSGKTYMLRIINA 224 (535)
Q Consensus 182 ~~~~~~~~liNG~~~~~~~-----------------------------------~~--~~~~~~~~v~~G~~~rlRliN~ 224 (535)
.......+.+||....... |. ....-.+.++.|+++.+=|.|.
T Consensus 377 ~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~ 456 (574)
T PLN02191 377 LIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNA 456 (574)
T ss_pred eeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECC
Confidence 0000124567776431000 00 0011245677799999989887
Q ss_pred C-----CCceEEEEEcCceeEEEEeCCc------------ccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecC
Q 009392 225 A-----LNEELFFKIAGHKLTVVEVDAT------------YVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPF 285 (535)
Q Consensus 225 ~-----~~~~~~~~i~gh~~~via~DG~------------~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~ 285 (535)
. ....+.||+|||+|+|++..-+ ...|...|++.+.++.=.-+.+++++ ||.|.+|||..
T Consensus 457 ~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDN-PG~Wl~HCHi~ 533 (574)
T PLN02191 457 NVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDN-PGVWFFHCHIE 533 (574)
T ss_pred CcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCC-CEEEEEecCch
Confidence 5 2345669999999999976532 12477899999999999999999998 89999999963
No 39
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.75 E-value=7e-07 Score=96.48 Aligned_cols=227 Identities=15% Similarity=0.117 Sum_probs=130.2
Q ss_pred cEEEEecCCEEEEEEEECC-CCCceEEeCCcccCCCCCCCCCCC----cccCcCCCCCeEEEEEEeCCCCc-ceeEecCh
Q 009392 54 PTLYAREHDTVLVKVVNHV-KYNVTIHWHGVRQLRTGWADGPAY----ITQCPIQSGHSYVYNFTITGQRG-TLLWHAHI 127 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N~l-~~~t~iH~HG~~~~~~~~~DGvp~----~tq~~i~PG~~~~Y~~~~~~~~G-t~wYH~H~ 127 (535)
++|.|++|++.++|+.|.. .....++..|....-.. .||.+- ++...|.||||++.-.+++..+| .||.-.-.
T Consensus 217 ~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa-~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~ 295 (596)
T PLN00044 217 ERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVE-AEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASA 295 (596)
T ss_pred ceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEE-eCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEec
Confidence 5899999999999999997 45666777776544332 688542 23456999999999999944445 89986532
Q ss_pred h--h----hh-cccEEEEEEeCCCC---CCCCCCCC-CceEEEEE---Eeec--cC------Ch---HHH----HHHHH-
Q 009392 128 L--W----LR-ATVHGAIVILPKRG---VPYPFPKP-HKEVVVVL---AEWW--KS------DT---EAV----INQAL- 177 (535)
Q Consensus 128 ~--~----~~-~Gl~G~iiV~~~~~---~~~~~~~~-~~e~~l~~---~d~~--~~------~~---~~~----~~~~~- 177 (535)
. . +. .|. +.|--.+... ...|.... ..+..... .... .. .. ... .....
T Consensus 296 ~~~~~~~~~~~~~~-AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 374 (596)
T PLN00044 296 RFVDAAVVDKLTGV-AILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYL 374 (596)
T ss_pred ccccCccccCccee-EEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeee
Confidence 1 1 11 222 2222222111 00111000 00100000 0000 00 00 000 00000
Q ss_pred hCCC-CCCC--CceEEEcCccCCC----------CCCC-------CC---------CceeEEEeCCCEEEEEEEEcCCCc
Q 009392 178 QSGL-APNV--SDSHTINGQPGPI----------SSCS-------SQ---------GGFTLPVDSGKTYMLRIINAALNE 228 (535)
Q Consensus 178 ~~g~-~~~~--~~~~liNG~~~~~----------~~~~-------~~---------~~~~~~v~~G~~~rlRliN~~~~~ 228 (535)
..+. ...+ .-.+.|||..... ++.+ .. ......++.++++.+-|-|... .
T Consensus 375 ~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~~-~ 453 (596)
T PLN00044 375 LQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNAT-N 453 (596)
T ss_pred eccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCCC-C
Confidence 0000 0000 1246777775321 0000 00 1234567778999988888653 3
Q ss_pred eEEEEEcCceeEEEEeCCc-----------ccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeec
Q 009392 229 ELFFKIAGHKLTVVEVDAT-----------YVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASP 284 (535)
Q Consensus 229 ~~~~~i~gh~~~via~DG~-----------~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~ 284 (535)
.+.||+|||+|.|++...+ ++.|...|++.+.+|.=.-|.+++|+ ||.|.||||.
T Consensus 454 ~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDN-PG~W~lHCH~ 519 (596)
T PLN00044 454 VQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDN-AGIWNLRVEN 519 (596)
T ss_pred CCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCC-CEEehhhccC
Confidence 5569999999999976542 33588899999999999999999998 8999999994
No 40
>PRK02710 plastocyanin; Provisional
Probab=98.74 E-value=1.4e-07 Score=80.93 Aligned_cols=73 Identities=23% Similarity=0.246 Sum_probs=53.6
Q ss_pred cEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChhhhhcc
Q 009392 54 PTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHILWLRAT 133 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~G 133 (535)
+.|++++||+| +++|....++++.+.|.. +.. .+...+.||++++|.|.. +|+|-|+|-.|. ..|
T Consensus 47 ~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~--------~~~-~~~~~~~pg~t~~~tF~~---~G~y~y~C~~H~-~~g 111 (119)
T PRK02710 47 STLTIKAGDTV--KWVNNKLAPHNAVFDGAK--------ELS-HKDLAFAPGESWEETFSE---AGTYTYYCEPHR-GAG 111 (119)
T ss_pred CEEEEcCCCEE--EEEECCCCCceEEecCCc--------ccc-ccccccCCCCEEEEEecC---CEEEEEEcCCCc-cCC
Confidence 79999999985 567877778888776431 100 111247999999999963 899999997332 279
Q ss_pred cEEEEEEe
Q 009392 134 VHGAIVIL 141 (535)
Q Consensus 134 l~G~iiV~ 141 (535)
|.|.|+|+
T Consensus 112 M~G~I~V~ 119 (119)
T PRK02710 112 MVGKITVE 119 (119)
T ss_pred cEEEEEEC
Confidence 99999984
No 41
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.36 E-value=5.2e-07 Score=75.50 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=47.3
Q ss_pred CCCCcEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChhh
Q 009392 50 KFPGPTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHILW 129 (535)
Q Consensus 50 ~~pgP~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~ 129 (535)
+|--..|++++|+.|+|+++|.....+.+...++... ..|.||++.+++|.. .++|+|=|+|-.+.
T Consensus 31 ~f~P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~ 96 (104)
T PF13473_consen 31 GFSPSTITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS-------------KVLPPGETATVTFTP-LKPGEYEFYCTMHP 96 (104)
T ss_dssp EEES-EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE--S-EEEEEB-SSS-
T ss_pred eEecCEEEEcCCCeEEEEEEECCCCcEEEEECCCceE-------------EEECCCCEEEEEEcC-CCCEEEEEEcCCCC
Confidence 4432599999999999999999877766666553321 348999999999987 89999999998765
Q ss_pred hhcccEEEEEE
Q 009392 130 LRATVHGAIVI 140 (535)
Q Consensus 130 ~~~Gl~G~iiV 140 (535)
. |.|-|+|
T Consensus 97 --~-m~G~liV 104 (104)
T PF13473_consen 97 --N-MKGTLIV 104 (104)
T ss_dssp --T-TB-----
T ss_pred --c-ceecccC
Confidence 2 6777765
No 42
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.35 E-value=2.6e-05 Score=83.57 Aligned_cols=242 Identities=16% Similarity=0.161 Sum_probs=134.8
Q ss_pred eeEEEECCCCCC-----cEEEEecCCEEEEEEEECC-CCCceEEeCCcccCCCCCCCCC---CCcc-cCcCCCCCeEEEE
Q 009392 42 KPIVTVNRKFPG-----PTLYAREHDTVLVKVVNHV-KYNVTIHWHGVRQLRTGWADGP---AYIT-QCPIQSGHSYVYN 111 (535)
Q Consensus 42 ~~~~~~NG~~pg-----P~i~~~~Gd~v~v~v~N~l-~~~t~iH~HG~~~~~~~~~DGv---p~~t-q~~i~PG~~~~Y~ 111 (535)
-...++||+-+- +++.+++|++.++|+.|.. .....+..-|....... .||. |..+ -.-|.|||++++-
T Consensus 192 ~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe-~Dg~y~~p~~~~~l~i~~GQ~~~vL 270 (563)
T KOG1263|consen 192 SDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVE-VDGAYTKPFTTDSLDIHPGQTYSVL 270 (563)
T ss_pred CCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEE-ecceEEeeeeeceEEEcCCcEEEEE
Confidence 357899998521 6899999999999999995 33333444343332221 6773 3322 2458999999999
Q ss_pred EEeCCCCcceeEecChhhhhc----ccEEEEEEeCCCC---CCC--C---CCCCCceE--EEEEE----eecc----CC-
Q 009392 112 FTITGQRGTLLWHAHILWLRA----TVHGAIVILPKRG---VPY--P---FPKPHKEV--VVVLA----EWWK----SD- 168 (535)
Q Consensus 112 ~~~~~~~Gt~wYH~H~~~~~~----Gl~G~iiV~~~~~---~~~--~---~~~~~~e~--~l~~~----d~~~----~~- 168 (535)
.++++.++.||+-.....+.. =+.+..+++-... ... + ......+. .+-+. .... ..
T Consensus 271 vtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~ 350 (563)
T KOG1263|consen 271 LTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPV 350 (563)
T ss_pred EeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCcccC
Confidence 999777889999877543321 2222222222210 000 0 00000000 00000 0000 00
Q ss_pred hHHHHHHHH---------hCCC-CCCCCceEEEcCccC---------------------CCCCCCC----------CCce
Q 009392 169 TEAVINQAL---------QSGL-APNVSDSHTINGQPG---------------------PISSCSS----------QGGF 207 (535)
Q Consensus 169 ~~~~~~~~~---------~~g~-~~~~~~~~liNG~~~---------------------~~~~~~~----------~~~~ 207 (535)
......... .... .........||+... ..+.|.. ...-
T Consensus 351 P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~ 430 (563)
T KOG1263|consen 351 PQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTS 430 (563)
T ss_pred CCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCccccccce
Confidence 000000000 0000 000112344444321 0011211 1123
Q ss_pred eEEEeCCCEEEEEEEEcCCCc--eEEEEEcCceeEEEEeCCc-c------------cceeEeceEEeCCCceEEEEEEeC
Q 009392 208 TLPVDSGKTYMLRIINAALNE--ELFFKIAGHKLTVVEVDAT-Y------------VKPFKTDNIVIAPGQTTNVLLSAD 272 (535)
Q Consensus 208 ~~~v~~G~~~rlRliN~~~~~--~~~~~i~gh~~~via~DG~-~------------v~P~~~d~l~l~pGeR~dv~v~~~ 272 (535)
.++++-+..+-+=+-|.+... .+.+|+|||.|+|++.+.+ . ..|...+++.|.||.=.-|.+.+|
T Consensus 431 v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~ad 510 (563)
T KOG1263|consen 431 VMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVAD 510 (563)
T ss_pred EEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcC
Confidence 467777888888888887433 3456999999999999432 2 236778999999999999999999
Q ss_pred CCCceeEEEeecC
Q 009392 273 KTSGKYLVAASPF 285 (535)
Q Consensus 273 ~~~g~y~i~~~~~ 285 (535)
+ ||.|.||||..
T Consensus 511 N-PG~W~~HCHie 522 (563)
T KOG1263|consen 511 N-PGVWLMHCHIE 522 (563)
T ss_pred C-CcEEEEEEecH
Confidence 8 89999999963
No 43
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.17 E-value=1e-05 Score=66.94 Aligned_cols=80 Identities=19% Similarity=0.144 Sum_probs=54.2
Q ss_pred cEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCc--ccCcCCCCCeEEEEEEeCCCCcceeEecChhhhh
Q 009392 54 PTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYI--TQCPIQSGHSYVYNFTITGQRGTLLWHAHILWLR 131 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~--tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~ 131 (535)
..|++++||+| +++|....++++.++........ .+..+.. +...+.||+++++.|. .+|+|.|+|- ...
T Consensus 17 ~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pG~t~~~tF~---~~G~y~y~C~--~H~ 88 (99)
T TIGR02656 17 AKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGV-KELAKSLSHKDLLNSPGESYEVTFS---TPGTYTFYCE--PHR 88 (99)
T ss_pred CEEEECCCCEE--EEEECCCCCceEEECCCCCccch-hhhcccccccccccCCCCEEEEEeC---CCEEEEEEcC--Ccc
Confidence 69999999985 56687667777777543211110 0111111 2234789999999886 3999999997 333
Q ss_pred -cccEEEEEEe
Q 009392 132 -ATVHGAIVIL 141 (535)
Q Consensus 132 -~Gl~G~iiV~ 141 (535)
+||.|.|+|+
T Consensus 89 ~aGM~G~I~V~ 99 (99)
T TIGR02656 89 GAGMVGKITVE 99 (99)
T ss_pred ccCCEEEEEEC
Confidence 7999999985
No 44
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=98.06 E-value=2.9e-05 Score=62.01 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=52.7
Q ss_pred cEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChhhhhcc
Q 009392 54 PTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHILWLRAT 133 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~G 133 (535)
+.|++++||+| ++.|....+++++..........+. ...+.||+++++.| .++|+|-|||-.|. .
T Consensus 11 ~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~~~~~~~-------~~~~~~g~~~~~tf---~~~G~y~y~C~~Hp---~ 75 (83)
T TIGR02657 11 PELHVKVGDTV--TWINREAMPHNVHFVAGVLGEAALK-------GPMMKKEQAYSLTF---TEAGTYDYHCTPHP---F 75 (83)
T ss_pred CEEEECCCCEE--EEEECCCCCccEEecCCCCcccccc-------ccccCCCCEEEEEC---CCCEEEEEEcCCCC---C
Confidence 79999999995 5688877788888764321111111 12357888888877 46999999998765 6
Q ss_pred cEEEEEEe
Q 009392 134 VHGAIVIL 141 (535)
Q Consensus 134 l~G~iiV~ 141 (535)
|.|.++|+
T Consensus 76 M~G~v~V~ 83 (83)
T TIGR02657 76 MRGKVVVE 83 (83)
T ss_pred CeEEEEEC
Confidence 99999985
No 45
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.97 E-value=2.7e-05 Score=70.55 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=65.4
Q ss_pred ceeEEEECCC------------CCCcEEEEecCCEEEEEEEECCCC-CceEEeCCcccCCCCCCCCCCC----cccCcCC
Q 009392 41 SKPIVTVNRK------------FPGPTLYAREHDTVLVKVVNHVKY-NVTIHWHGVRQLRTGWADGPAY----ITQCPIQ 103 (535)
Q Consensus 41 ~~~~~~~NG~------------~pgP~i~~~~Gd~v~v~v~N~l~~-~t~iH~HG~~~~~~~~~DGvp~----~tq~~i~ 103 (535)
....+++||+ -.-|+|.+++|+++++||.|.... ...++..|....-.. .||.+- ++...|.
T Consensus 35 ~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via-~DG~~v~p~~~~~l~l~ 113 (159)
T PF00394_consen 35 IPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIA-ADGVPVEPYKVDTLVLA 113 (159)
T ss_dssp SCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEE-ETTEEEEEEEESBEEE-
T ss_pred CCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEee-eccccccccccceEEee
Confidence 4557899993 123899999999999999999854 678899887654433 688653 3345689
Q ss_pred CCCeEEEEEEeCCCCcceeEecC
Q 009392 104 SGHSYVYNFTITGQRGTLLWHAH 126 (535)
Q Consensus 104 PG~~~~Y~~~~~~~~Gt~wYH~H 126 (535)
||++++..++++..+|.||.++.
T Consensus 114 ~G~R~dvlv~~~~~~g~y~i~~~ 136 (159)
T PF00394_consen 114 PGQRYDVLVTADQPPGNYWIRAS 136 (159)
T ss_dssp TTEEEEEEEEECSCSSEEEEEEE
T ss_pred CCeEEEEEEEeCCCCCeEEEEEe
Confidence 99999999999434999999993
No 46
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.93 E-value=3.3e-05 Score=63.90 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=52.5
Q ss_pred cEEEEecCCEEEEEEEECCCCCceEEeCC--cccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChhhhh
Q 009392 54 PTLYAREHDTVLVKVVNHVKYNVTIHWHG--VRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHILWLR 131 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N~l~~~t~iH~HG--~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~ 131 (535)
+.|++++||+| ++.|....++++.+=- +...... ....+.-....+.||++++++|+ .+|+|.|+|-. ...
T Consensus 17 ~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~P-H~~ 89 (99)
T PF00127_consen 17 SEITVKAGDTV--TFVNNDSMPHNVVFVADGMPAGADS-DYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCTP-HYE 89 (99)
T ss_dssp SEEEEETTEEE--EEEEESSSSBEEEEETTSSHTTGGH-CHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEETT-TGG
T ss_pred CEEEECCCCEE--EEEECCCCCceEEEecccccccccc-cccCccccceecCCCCEEEEEeC---CCeEEEEEcCC-Ccc
Confidence 79999999985 5677666666666622 1100000 00000001234789999999997 79999999973 223
Q ss_pred cccEEEEEEe
Q 009392 132 ATVHGAIVIL 141 (535)
Q Consensus 132 ~Gl~G~iiV~ 141 (535)
.||.|.|+|+
T Consensus 90 ~GM~G~i~V~ 99 (99)
T PF00127_consen 90 AGMVGTIIVE 99 (99)
T ss_dssp TTSEEEEEEE
T ss_pred cCCEEEEEEC
Confidence 7999999995
No 47
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=97.86 E-value=2.8e-05 Score=66.38 Aligned_cols=86 Identities=22% Similarity=0.210 Sum_probs=65.5
Q ss_pred ceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEE-EeCCcccceeEeceEEeCCCceE
Q 009392 187 DSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVV-EVDATYVKPFKTDNIVIAPGQTT 265 (535)
Q Consensus 187 ~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~v~P~~~d~l~l~pGeR~ 265 (535)
..+++||+. ..|+|+++.|+++++++.|.... ...+|.+|....-- ..||.+-.+ .-.|.||+++
T Consensus 15 ~~~~~ng~~---------pGPtI~v~~Gd~v~i~~~N~l~~-~~siH~HG~~~~~~~~~DG~~~~~----~~~i~pG~~~ 80 (117)
T PF07732_consen 15 KVWTYNGQF---------PGPTIRVREGDTVRITVTNNLDE-PTSIHWHGLHQPPSPWMDGVPGVT----QCPIAPGESF 80 (117)
T ss_dssp EEEEETTBS---------SEEEEEEETTEEEEEEEEEESSS-GBSEEEETSBSTTGGGGSGGTTTS----GSSBSTTEEE
T ss_pred EEEEECCCC---------CCCEEEEEcCCeeEEEEEecccc-ccccccceeeeeeeeecCCccccc----ceeEEeecce
Confidence 579999985 24999999999999999999844 44578887543210 256654322 2358999999
Q ss_pred EEEEEeCCCCceeEEEeecCC
Q 009392 266 NVLLSADKTSGKYLVAASPFM 286 (535)
Q Consensus 266 dv~v~~~~~~g~y~i~~~~~~ 286 (535)
...+++++.+|.||+||+...
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~ 101 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHG 101 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTT
T ss_pred eeeEeeeccccceeEeeCCCc
Confidence 999999987899999999643
No 48
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.85 E-value=6.5e-05 Score=80.30 Aligned_cols=99 Identities=16% Similarity=0.178 Sum_probs=70.6
Q ss_pred eeeccCCceeE--EEECCCCCCcEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEE
Q 009392 34 NSTKLCSSKPI--VTVNRKFPGPTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYN 111 (535)
Q Consensus 34 ~~~~~g~~~~~--~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~ 111 (535)
.+.++|.+..+ ....=+|--+.|+|++||.|+|+|+|.....=.+ ||+.+++. |+- .-+.||++.+..
T Consensus 533 ~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI~----~dv~PG~t~svt 602 (635)
T PRK02888 533 KVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GVN----MEVAPQATASVT 602 (635)
T ss_pred ceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Ccc----EEEcCCceEEEE
Confidence 35567766554 4555566446899999999999999964311111 67665432 111 347899999999
Q ss_pred EEeCCCCcceeEecChhh-hh-cccEEEEEEeCC
Q 009392 112 FTITGQRGTLLWHAHILW-LR-ATVHGAIVILPK 143 (535)
Q Consensus 112 ~~~~~~~Gt~wYH~H~~~-~~-~Gl~G~iiV~~~ 143 (535)
|++ +++|.|||||..-- .. .+|.|.++|+++
T Consensus 603 F~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 603 FTA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred EEc-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 998 89999999998532 22 799999999874
No 49
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.67 E-value=0.0012 Score=59.00 Aligned_cols=97 Identities=19% Similarity=0.131 Sum_probs=71.3
Q ss_pred EEECCCCCC-cEEEEecCCEEEEEEEECCCCCceEEeCCcccCCC--C----C-CCCC----CCcc-----cCcCCCCCe
Q 009392 45 VTVNRKFPG-PTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRT--G----W-ADGP----AYIT-----QCPIQSGHS 107 (535)
Q Consensus 45 ~~~NG~~pg-P~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~--~----~-~DGv----p~~t-----q~~i~PG~~ 107 (535)
+-+||+..| ++|.+-.|-+|.|++.|.-..++++-. -+.++ + + .||. +|.+ -..|.+|++
T Consensus 75 fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i---v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs 151 (195)
T TIGR03094 75 FNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL---LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHS 151 (195)
T ss_pred ccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE---ecCCCCCCCccccccCceeEeecccccCccccccccccce
Confidence 667998888 899999999999999999877766544 22222 1 1 3663 2322 134678888
Q ss_pred EEEEEEeCCCCcceeEecChhhhh-cccEEEEEEeCCCC
Q 009392 108 YVYNFTITGQRGTLLWHAHILWLR-ATVHGAIVILPKRG 145 (535)
Q Consensus 108 ~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~iiV~~~~~ 145 (535)
-.=.|.. -++|+|||-|-.-+.. +||+|.+||...-.
T Consensus 152 ~sg~~~~-~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 152 RSGWWND-TSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred eEEEecc-CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 5555554 7999999999987776 99999999987654
No 50
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.60 E-value=0.001 Score=60.76 Aligned_cols=102 Identities=16% Similarity=0.067 Sum_probs=72.4
Q ss_pred eEEEECCCCCC-cEEEEecCCEEEEEEEECCCCCceEEe--CCcccCC--CCCCCCCC----C-----cccCcCCCCCeE
Q 009392 43 PIVTVNRKFPG-PTLYAREHDTVLVKVVNHVKYNVTIHW--HGVRQLR--TGWADGPA----Y-----ITQCPIQSGHSY 108 (535)
Q Consensus 43 ~~~~~NG~~pg-P~i~~~~Gd~v~v~v~N~l~~~t~iH~--HG~~~~~--~~~~DGvp----~-----~tq~~i~PG~~~ 108 (535)
+.+-|||..-| ++|.+-.|-+|.|+++|.-..++++=. -+-.++. .-..||.. | .+...|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 47788998777 799999999999999998654433222 1221111 11245511 1 122468899999
Q ss_pred EEEEEeCCCCcceeEecChhhhh-cccEEEEEEeCCCC
Q 009392 109 VYNFTITGQRGTLLWHAHILWLR-ATVHGAIVILPKRG 145 (535)
Q Consensus 109 ~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~iiV~~~~~ 145 (535)
.-.|.. -++|+|||-|-..+.. +||++-|+|...-.
T Consensus 154 ~~~~~~-l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 154 SGVYND-LPAGYYWLVCGIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred eEEEcc-CCCceEEEEccCCChhhcCCEEEEEEecCcc
Confidence 877754 6899999999988887 99999999997654
No 51
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.50 E-value=0.00047 Score=61.26 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=56.8
Q ss_pred CCceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCCceEEEEEcCce--eEEE-EeCCcccceeEeceEEe--
Q 009392 185 VSDSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALNEELFFKIAGHK--LTVV-EVDATYVKPFKTDNIVI-- 259 (535)
Q Consensus 185 ~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~--~~vi-a~DG~~v~P~~~d~l~l-- 259 (535)
....|.+||... |.|++++|+++++++.|......+.|.|+.+. +... ..||....+ +...+
T Consensus 40 ~~~~f~~~~~~~----------P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~---~~~i~p~ 106 (148)
T TIGR03095 40 SMYSFEIHDLKN----------PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVA---GTGFLPP 106 (148)
T ss_pred CceeEEecCCCC----------CEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccc---cCcccCC
Confidence 346899999875 99999999999999999976334445555332 2111 346543211 11112
Q ss_pred -CCCce--EEEEEEeCCCCceeEEEeec
Q 009392 260 -APGQT--TNVLLSADKTSGKYLVAASP 284 (535)
Q Consensus 260 -~pGeR--~dv~v~~~~~~g~y~i~~~~ 284 (535)
.+|+. .++.+++++ +|.||++|+.
T Consensus 107 ~~~g~~~~~~~tf~f~~-aGtywyhC~~ 133 (148)
T TIGR03095 107 PKSGKFGYTDFTYHFST-AGTYWYLCTY 133 (148)
T ss_pred CCCCccceeEEEEECCC-CeEEEEEcCC
Confidence 23444 588888886 8999999984
No 52
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.47 E-value=0.0013 Score=56.34 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=53.8
Q ss_pred cEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChhhhhcc
Q 009392 54 PTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHILWLRAT 133 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~G 133 (535)
-.|++++||+ |++.|.....++++.-+.. .+ +|.- ...-.+|++|++.|. .+|+|-|.|-.|. .+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~---~~--~g~~---~~~~~~~~s~~~Tfe---~~G~Y~Y~C~PH~-~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM---DP--EGSG---TLKAGINESFTHTFE---TPGEYTYYCTPHP-GMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC---Cc--cccc---ccccCCCcceEEEec---ccceEEEEeccCC-CCC
Confidence 4999999999 8899998878888876654 11 2221 123345677777774 5999999985442 179
Q ss_pred cEEEEEEeC
Q 009392 134 VHGAIVILP 142 (535)
Q Consensus 134 l~G~iiV~~ 142 (535)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 53
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.33 E-value=0.0015 Score=55.28 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=48.1
Q ss_pred cEEEEecCCEEEEEEEECCCCCceEEe-CCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChhhhhc
Q 009392 54 PTLYAREHDTVLVKVVNHVKYNVTIHW-HGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHILWLRA 132 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N~l~~~t~iH~-HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~ 132 (535)
..|++++||+|+....|. ++++.+ .+.. -+|... ..-.+|++++++| +.+|+|=|+|-.|. ..
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~~------p~g~~~---~~s~~g~~~~~tF---~~~G~Y~Y~C~pH~-~~ 78 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GHNVETIKGMI------PEGAEA---FKSKINEEYTVTV---TEEGVYGVKCTPHY-GM 78 (116)
T ss_pred CEEEECCCCEEEEEECCC---CeeEEEccCCC------cCCccc---ccCCCCCEEEEEe---CCCEEEEEEcCCCc-cC
Confidence 699999999965555543 455544 2211 122211 1124577766666 47899999997332 38
Q ss_pred ccEEEEEEeCCC
Q 009392 133 TVHGAIVILPKR 144 (535)
Q Consensus 133 Gl~G~iiV~~~~ 144 (535)
||.|.|+|.++.
T Consensus 79 GM~G~V~Vg~~~ 90 (116)
T TIGR02375 79 GMVALIQVGDPP 90 (116)
T ss_pred CCEEEEEECCCC
Confidence 999999999854
No 54
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.20 E-value=0.0017 Score=55.99 Aligned_cols=62 Identities=23% Similarity=0.231 Sum_probs=51.2
Q ss_pred ceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecC
Q 009392 206 GFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPF 285 (535)
Q Consensus 206 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~ 285 (535)
+..++|++|++++|++.|... ..+.+.++++. -...|.|||+..+.+.+++ ||.|+++|...
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~-~~H~f~i~~~g----------------is~~I~pGet~TitF~adK-pG~Y~y~C~~H 121 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSP-ISEGFSIDAYG----------------ISEVIKAGETKTISFKADK-AGAFTIWCQLH 121 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCC-CccceEECCCC----------------cceEECCCCeEEEEEECCC-CEEEEEeCCCC
Confidence 378999999999999999986 34556666542 1567899999999999997 89999999864
No 55
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.08 E-value=0.0041 Score=52.57 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=49.5
Q ss_pred cEEEEecCCEEEEEEEECC-CCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChhhhhc
Q 009392 54 PTLYAREHDTVLVKVVNHV-KYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHILWLRA 132 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N~l-~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~ 132 (535)
..|++++||+ |+++|+. ..++++..-+ ... .| .......||++|+|.|. ++|+|=|+|-.|. ..
T Consensus 42 ~~ltV~~GdT--Vtw~~~~d~~~HnV~s~~----~~~-f~----s~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~pH~-~~ 106 (115)
T TIGR03102 42 PAIRVDPGTT--VVWEWTGEGGGHNVVSDG----DGD-LD----ESERVSEEGTTYEHTFE---EPGIYLYVCVPHE-AL 106 (115)
T ss_pred CEEEECCCCE--EEEEECCCCCCEEEEECC----CCC-cc----ccccccCCCCEEEEEec---CCcEEEEEccCCC-CC
Confidence 6899999999 5577553 4566665421 111 11 11123578999999994 6899999997542 26
Q ss_pred ccEEEEEEe
Q 009392 133 TVHGAIVIL 141 (535)
Q Consensus 133 Gl~G~iiV~ 141 (535)
||.|.|+|+
T Consensus 107 gM~G~I~V~ 115 (115)
T TIGR03102 107 GMKGAVVVE 115 (115)
T ss_pred CCEEEEEEC
Confidence 999999985
No 56
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.60 E-value=0.0099 Score=49.52 Aligned_cols=60 Identities=25% Similarity=0.318 Sum_probs=42.5
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeec
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASP 284 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~ 284 (535)
..+++++|+.++|.+.|.+... +.|.+++.. ....|.||+...+.+.+.+ ||.|.+.|..
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~~~----------------~~~~l~~g~~~~~~f~~~~-~G~y~~~C~~ 94 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRP-HEFVIPDLG----------------ISKVLPPGETATVTFTPLK-PGEYEFYCTM 94 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS--EEEEEGGGT----------------EEEEE-TT-EEEEEEEE-S--EEEEEB-SS
T ss_pred CEEEEcCCCeEEEEEEECCCCc-EEEEECCCc----------------eEEEECCCCEEEEEEcCCC-CEEEEEEcCC
Confidence 6899999999999999998765 556666521 2367899999999998875 8999999974
No 57
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=96.19 E-value=0.051 Score=47.65 Aligned_cols=88 Identities=16% Similarity=0.105 Sum_probs=63.2
Q ss_pred CCCCcEEEEecCCEEEEEEEECCCC--Cce---------EEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCC
Q 009392 50 KFPGPTLYAREHDTVLVKVVNHVKY--NVT---------IHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQR 118 (535)
Q Consensus 50 ~~pgP~i~~~~Gd~v~v~v~N~l~~--~t~---------iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~ 118 (535)
.|++-.++++.|++++..+.|.-.- ..+ .-.|..... .+++-. .....+.||++-+..|.. .++
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~---Dme~d~-~~~v~L~PG~s~elvv~f-t~~ 133 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILAD---DMEHDD-PNTVTLAPGKSGELVVVF-TGA 133 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCC---ccccCC-cceeEeCCCCcEEEEEEe-cCC
Confidence 3676789999999999999998531 111 111222221 133311 122458999999999998 789
Q ss_pred cceeEecChhhhh-cccEEEEEEeC
Q 009392 119 GTLLWHAHILWLR-ATVHGAIVILP 142 (535)
Q Consensus 119 Gt~wYH~H~~~~~-~Gl~G~iiV~~ 142 (535)
|.|=+-|-..+.+ .||.|-|.|.+
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeCC
Confidence 9999999999998 99999999864
No 58
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=95.80 E-value=0.025 Score=46.63 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=49.7
Q ss_pred eEEeeCCCEEEEEEecCCCCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEECCCCCC
Q 009392 432 AYRLAYNSTVQLILQDTGIIAPENHPVHLHGFNFFAVGKGLGNFNPKKDPKKFNLVDPVERNTIGVPSGGWVAIRXXXXX 511 (535)
Q Consensus 432 ~~~v~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~RDTv~vp~~g~~virf~adn 511 (535)
.+.++.|++|+|+ |.+ ...|-+.++.-.+.. +. .........+++.+.+|....+.|..
T Consensus 18 ~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~-----~~---------~~~~~~~~~~~~~~~pG~t~~~tF~~-- 76 (99)
T TIGR02656 18 KISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPA-----GV---------KELAKSLSHKDLLNSPGESYEVTFST-- 76 (99)
T ss_pred EEEECCCCEEEEE--ECC---CCCceEEECCCCCcc-----ch---------hhhcccccccccccCCCCEEEEEeCC--
Confidence 5789999999887 432 456776665432111 00 00011233467788899999998886
Q ss_pred CCCCeeee--c--cCceeeee
Q 009392 512 XXXAQIIQ--E--YGLCIAIW 528 (535)
Q Consensus 512 PG~w~~HC--H--~gm~~~~~ 528 (535)
||.|.|+| | .||...|.
T Consensus 77 ~G~y~y~C~~H~~aGM~G~I~ 97 (99)
T TIGR02656 77 PGTYTFYCEPHRGAGMVGKIT 97 (99)
T ss_pred CEEEEEEcCCccccCCEEEEE
Confidence 99999999 5 48877664
No 59
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=94.58 E-value=0.33 Score=49.70 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=54.1
Q ss_pred CCCCcEEEEecCCEEEEEEEECCCCCceEEeC-CcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChh
Q 009392 50 KFPGPTLYAREHDTVLVKVVNHVKYNVTIHWH-GVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHIL 128 (535)
Q Consensus 50 ~~pgP~i~~~~Gd~v~v~v~N~l~~~t~iH~H-G~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~ 128 (535)
++--..+.+..|+ +.+.|+|....++.+-.- |..+. . ....|.||.+.++.+++ .+|+|-|+|-.+
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~~~~~~vv-----~-----e~EnIaPG~s~~l~~~L--~pGtY~~~C~~~ 106 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNHSQKALEWEILKGVMVV-----E-----ERENIAPGFSQKMTANL--QPGEYDMTCGLL 106 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeCCCCcceEEeecccccc-----c-----cccccCCCCceEEEEec--CCceEEeecCcC
Confidence 3443699999996 999999998766442211 11100 0 11459999999988776 699999999432
Q ss_pred hhhcccEEEEEEeCCC
Q 009392 129 WLRATVHGAIVILPKR 144 (535)
Q Consensus 129 ~~~~Gl~G~iiV~~~~ 144 (535)
..+.|.|+|.++.
T Consensus 107 ---~~~~g~l~Vtg~~ 119 (375)
T PRK10378 107 ---TNPKGKLIVKGEA 119 (375)
T ss_pred ---CCCCceEEEeCCC
Confidence 3358899998653
No 60
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=94.48 E-value=0.18 Score=46.26 Aligned_cols=89 Identities=16% Similarity=0.214 Sum_probs=58.1
Q ss_pred ceEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCCceEEEEEcCc----eeEEEEeCCcccc-----eeEeceE
Q 009392 187 DSHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALNEELFFKIAGH----KLTVVEVDATYVK-----PFKTDNI 257 (535)
Q Consensus 187 ~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh----~~~via~DG~~v~-----P~~~d~l 257 (535)
+.+-+||... ...++.|.+|-++.++++|.+...|=-+-+..- ..-.++.||.-+. +-....-
T Consensus 74 ~~~nfnGts~--------G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~ 145 (196)
T PF06525_consen 74 NPFNFNGTSN--------GQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSN 145 (196)
T ss_pred CceeeecccC--------CcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccC
Confidence 3667777643 348999999999999999998655432222211 2335677776541 1111223
Q ss_pred EeCCCceEEEEEEeCCCCceeEEEeec
Q 009392 258 VIAPGQTTNVLLSADKTSGKYLVAASP 284 (535)
Q Consensus 258 ~l~pGeR~dv~v~~~~~~g~y~i~~~~ 284 (535)
-|.+||+....+..- ++|.|||.|.-
T Consensus 146 GI~~G~s~~~~~~~l-~aG~YwlvC~i 171 (196)
T PF06525_consen 146 GISSGQSASGVYNDL-PAGYYWLVCGI 171 (196)
T ss_pred CccCCceeeEEEccC-CCceEEEEccC
Confidence 466999999776533 48999999963
No 61
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.34 E-value=0.084 Score=46.33 Aligned_cols=74 Identities=19% Similarity=0.316 Sum_probs=53.7
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEc------CceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEE
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIA------GHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLV 280 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~------gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i 280 (535)
..+.++.|+++|+-+.|.+...+- |.++ +|.-..+.+| ..+--...++.|.||+..++.+++.+ +|+|.+
T Consensus 63 ~~~~v~aG~tv~~v~~n~~el~he-f~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft~-~g~ye~ 138 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEGELKHE-FTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFTG-AGKYEF 138 (158)
T ss_pred CcccccCCcEEeeeecCcccceEE-EeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEecC-CccEEE
Confidence 567899999999999999865543 5554 2222222222 11223456899999999999999997 899999
Q ss_pred Eeec
Q 009392 281 AASP 284 (535)
Q Consensus 281 ~~~~ 284 (535)
+|..
T Consensus 139 ~C~i 142 (158)
T COG4454 139 ACNI 142 (158)
T ss_pred EecC
Confidence 9974
No 62
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.75 E-value=0.42 Score=40.83 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=50.0
Q ss_pred CcEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChh-hhh
Q 009392 53 GPTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHIL-WLR 131 (535)
Q Consensus 53 gP~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~-~~~ 131 (535)
.+.|.+..|+.|++.+++. +.- ||..++.. ++ +.-+-||+.-...|.+ +++|+|++.|..- +..
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DVi-----Hsf~ip~~-------~~-k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~g 109 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVI-----HSFWIPEL-------GI-KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAG 109 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS------EEEEETTC-------TE-EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTT
T ss_pred cceecccccceEeEEEEcC-Ccc-----cccccccc-------Cc-ccccccccceeeeeee-ccCCcEEEcCccccCcC
Confidence 3689999999999999996 333 34433322 11 1336789999999998 8999999998742 222
Q ss_pred -cccEEEEEE
Q 009392 132 -ATVHGAIVI 140 (535)
Q Consensus 132 -~Gl~G~iiV 140 (535)
.-|.|-++|
T Consensus 110 H~~M~~~v~V 119 (120)
T PF00116_consen 110 HSFMPGKVIV 119 (120)
T ss_dssp GGG-EEEEEE
T ss_pred cCCCeEEEEE
Confidence 567777665
No 63
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.11 E-value=0.15 Score=55.20 Aligned_cols=61 Identities=7% Similarity=0.124 Sum_probs=46.8
Q ss_pred eEEeeCCCEEEEEEecCCCCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEECCCCCC
Q 009392 432 AYRLAYNSTVQLILQDTGIIAPENHPVHLHGFNFFAVGKGLGNFNPKKDPKKFNLVDPVERNTIGVPSGGWVAIRXXXXX 511 (535)
Q Consensus 432 ~~~v~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~RDTv~vp~~g~~virf~adn 511 (535)
.+.++.|+.|.+.+.|.....+..|-|-+-++... ..+.|+....+.|++|.
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI~----------------------------~dv~PG~t~svtF~adk 607 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGVN----------------------------MEVAPQATASVTFTADK 607 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCcc----------------------------EEEcCCceEEEEEEcCC
Confidence 47899999999999996543467777777444222 23446788999999999
Q ss_pred CCCCeeeec
Q 009392 512 XXXAQIIQE 520 (535)
Q Consensus 512 PG~w~~HCH 520 (535)
||+|.+||.
T Consensus 608 PGvy~~~Ct 616 (635)
T PRK02888 608 PGVYWYYCT 616 (635)
T ss_pred CEEEEEECC
Confidence 999999997
No 64
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=92.86 E-value=1.5 Score=37.52 Aligned_cols=62 Identities=19% Similarity=0.312 Sum_probs=47.6
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCC
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFM 286 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~ 286 (535)
..+.++.|++++|++-+.- -.+.|.|.+..++ +.+-||+.-.+.+++++ ||.|.++|.-++
T Consensus 46 ~~l~lp~g~~v~~~ltS~D--ViHsf~ip~~~~k----------------~d~~PG~~~~~~~~~~~-~G~y~~~C~e~C 106 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSED--VIHSFWIPELGIK----------------MDAIPGRTNSVTFTPDK-PGTYYGQCAEYC 106 (120)
T ss_dssp SEEEEETTSEEEEEEEESS--S-EEEEETTCTEE----------------EEEBTTCEEEEEEEESS-SEEEEEEE-SSS
T ss_pred ceecccccceEeEEEEcCC--ccccccccccCcc----------------cccccccceeeeeeecc-CCcEEEcCcccc
Confidence 6899999999999998854 4555677765543 35568999999999986 899999998654
Q ss_pred C
Q 009392 287 D 287 (535)
Q Consensus 287 ~ 287 (535)
.
T Consensus 107 G 107 (120)
T PF00116_consen 107 G 107 (120)
T ss_dssp S
T ss_pred C
Confidence 4
No 65
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=92.58 E-value=0.13 Score=42.24 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=46.5
Q ss_pred eeEEeeCCCEEEEEEecCCCCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEECCCCC
Q 009392 431 KAYRLAYNSTVQLILQDTGIIAPENHPVHLHGFNFFAVGKGLGNFNPKKDPKKFNLVDPVERNTIGVPSGGWVAIRXXXX 510 (535)
Q Consensus 431 ~~~~v~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~RDTv~vp~~g~~virf~ad 510 (535)
..+.++.|++|.|+..+ ...|-+.+ ...+ +....+.... +..-.+..+.+|....+.|.
T Consensus 17 ~~i~V~~G~tV~~~n~~-----~~~Hnv~~-------~~~~---~~~~~~~~~~----~~~~~~~~~~~G~~~~~tF~-- 75 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNND-----SMPHNVVF-------VADG---MPAGADSDYV----PPGDSSPLLAPGETYSVTFT-- 75 (99)
T ss_dssp SEEEEETTEEEEEEEES-----SSSBEEEE-------ETTS---SHTTGGHCHH----STTCEEEEBSTTEEEEEEEE--
T ss_pred CEEEECCCCEEEEEECC-----CCCceEEE-------eccc---cccccccccc----CccccceecCCCCEEEEEeC--
Confidence 35799999999998764 34555443 3311 1000000000 11115667788888888877
Q ss_pred CCCCCeeee--cc--Cceeee
Q 009392 511 XXXXAQIIQ--EY--GLCIAI 527 (535)
Q Consensus 511 nPG~w~~HC--H~--gm~~~~ 527 (535)
.||.+.|+| |. ||.-.|
T Consensus 76 ~~G~y~y~C~PH~~~GM~G~i 96 (99)
T PF00127_consen 76 KPGTYEYYCTPHYEAGMVGTI 96 (99)
T ss_dssp SSEEEEEEETTTGGTTSEEEE
T ss_pred CCeEEEEEcCCCcccCCEEEE
Confidence 999999999 85 776654
No 66
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=91.98 E-value=1.1 Score=38.22 Aligned_cols=89 Identities=15% Similarity=0.155 Sum_probs=55.8
Q ss_pred CCCcEEEEecC-CEEEEEEEECCCCCceEEeCCcccCCCCCC-----C----C-----CCC-----cc-cCcCCCCCeEE
Q 009392 51 FPGPTLYAREH-DTVLVKVVNHVKYNVTIHWHGVRQLRTGWA-----D----G-----PAY-----IT-QCPIQSGHSYV 109 (535)
Q Consensus 51 ~pgP~i~~~~G-d~v~v~v~N~l~~~t~iH~HG~~~~~~~~~-----D----G-----vp~-----~t-q~~i~PG~~~~ 109 (535)
|-=..|.|..+ ..|.|+|+|....+-..=-|-+-......+ | | +|. +. -.-|.|||+.+
T Consensus 13 Fd~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~s 92 (125)
T TIGR02695 13 FNTKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTS 92 (125)
T ss_pred ccccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEE
Confidence 33468999984 789999999853332222221111100000 1 1 221 11 13378999999
Q ss_pred EEEEeCC-CCcc-eeEecChhhhhcccEEEEE
Q 009392 110 YNFTITG-QRGT-LLWHAHILWLRATVHGAIV 139 (535)
Q Consensus 110 Y~~~~~~-~~Gt-~wYH~H~~~~~~Gl~G~ii 139 (535)
.+|+++. ++|+ |=|-|-+.+....|.|.+.
T Consensus 93 vtF~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~ 124 (125)
T TIGR02695 93 VTFDVSKLSAGEDYTFFCSFPGHWAMMRGTVK 124 (125)
T ss_pred EEEECCCCCCCCcceEEEcCCCcHHhceEEEe
Confidence 9999832 6886 9999999888888988875
No 67
>PRK02710 plastocyanin; Provisional
Probab=88.79 E-value=1.5 Score=37.32 Aligned_cols=61 Identities=25% Similarity=0.384 Sum_probs=40.3
Q ss_pred ceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeec
Q 009392 206 GFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASP 284 (535)
Q Consensus 206 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~ 284 (535)
+..+++++|++++| +|.+.. .+++.+++. .......+.+.||+.+++.++ + +|.|.+.|..
T Consensus 46 P~~i~v~~Gd~V~~--~N~~~~-~H~v~~~~~------------~~~~~~~~~~~pg~t~~~tF~--~-~G~y~y~C~~ 106 (119)
T PRK02710 46 PSTLTIKAGDTVKW--VNNKLA-PHNAVFDGA------------KELSHKDLAFAPGESWEETFS--E-AGTYTYYCEP 106 (119)
T ss_pred CCEEEEcCCCEEEE--EECCCC-CceEEecCC------------ccccccccccCCCCEEEEEec--C-CEEEEEEcCC
Confidence 36899999998766 576533 334444421 111123466899999997765 3 7999999974
No 68
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=88.58 E-value=4.4 Score=32.01 Aligned_cols=66 Identities=17% Similarity=0.288 Sum_probs=38.1
Q ss_pred EEEEEEEEcCCCceEEEEEc-Cc--eeEEEEeCCcccc--------eeEeceEEeCCCceEEEEEEeCCC---CceeEEE
Q 009392 216 TYMLRIINAALNEELFFKIA-GH--KLTVVEVDATYVK--------PFKTDNIVIAPGQTTNVLLSADKT---SGKYLVA 281 (535)
Q Consensus 216 ~~rlRliN~~~~~~~~~~i~-gh--~~~via~DG~~v~--------P~~~d~l~l~pGeR~dv~v~~~~~---~g~y~i~ 281 (535)
...|++.|.+... ..|.+. |+ .|.|...+|..+- -+......|.|||...+-.+.+.. ||.|.+.
T Consensus 3 ~~~l~v~N~s~~~-v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNSDEP-VTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCCCCe-EEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 3568888887543 445554 44 4555556777661 234568899999999999998874 6999886
Q ss_pred e
Q 009392 282 A 282 (535)
Q Consensus 282 ~ 282 (535)
|
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 69
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=85.85 E-value=4.9 Score=34.27 Aligned_cols=78 Identities=23% Similarity=0.358 Sum_probs=51.2
Q ss_pred ceeEEEeC-CCEEEEEEEEcCCCc----eEEEEEc-CceeEEEEe-------CCcccce----eEeceEEeCCCceEEEE
Q 009392 206 GFTLPVDS-GKTYMLRIINAALNE----ELFFKIA-GHKLTVVEV-------DATYVKP----FKTDNIVIAPGQTTNVL 268 (535)
Q Consensus 206 ~~~~~v~~-G~~~rlRliN~~~~~----~~~~~i~-gh~~~via~-------DG~~v~P----~~~d~l~l~pGeR~dv~ 268 (535)
...|+|++ ++.+.+.|-|.|... .+++-|- .-++.-|+. |-+++.+ +...+=.|++||..+|.
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 36899998 588999999998644 1222221 122322322 3445533 23456689999999999
Q ss_pred EEeCC-CCc-eeEEEee
Q 009392 269 LSADK-TSG-KYLVAAS 283 (535)
Q Consensus 269 v~~~~-~~g-~y~i~~~ 283 (535)
++++. .+| +|.+.|.
T Consensus 95 F~~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCS 111 (125)
T ss_pred EECCCCCCCCcceEEEc
Confidence 99874 356 6999997
No 70
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=84.81 E-value=3.7 Score=38.53 Aligned_cols=62 Identities=24% Similarity=0.326 Sum_probs=45.9
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCC
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFM 286 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~ 286 (535)
..+.++.|+.+||++-+.... |.|.+ |...-....-||..-.+.+++++ +|.|..+|.-++
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV~---------Hsf~i---------p~~~~k~da~PG~~~~~~~~~~~-~G~y~~~c~e~c 177 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDVI---------HSFWV---------PELGGKIDAIPGQYNALWFNADE-PGVYYGYCAELC 177 (201)
T ss_pred CEEEEEcCCEEEEEEEeCchh---------hcccc---------cccCceEEecCCcEEEEEEEeCC-CEEEEEEehhhC
Confidence 578999999999998875432 44444 22222455778999999999996 899999998654
Q ss_pred C
Q 009392 287 D 287 (535)
Q Consensus 287 ~ 287 (535)
.
T Consensus 178 G 178 (201)
T TIGR02866 178 G 178 (201)
T ss_pred C
Confidence 3
No 71
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=84.29 E-value=3.7 Score=32.42 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=30.6
Q ss_pred EEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCC---cccCcCCCCCeEEEEEEeCCC---CcceeE
Q 009392 55 TLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAY---ITQCPIQSGHSYVYNFTITGQ---RGTLLW 123 (535)
Q Consensus 55 ~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~---~tq~~i~PG~~~~Y~~~~~~~---~Gt~wY 123 (535)
+|+..-|++..+.|.|.-.+ ..| .|++|... +.+..|+||++.+|++..+.. +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g~---~vw--------rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEGK---EVW--------RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT-----EEE--------ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCCC---EEE--------EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 66666666666666655221 111 25677543 334669999999999999432 688864
No 72
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=84.03 E-value=3.4 Score=32.57 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=38.9
Q ss_pred ceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecC
Q 009392 206 GFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPF 285 (535)
Q Consensus 206 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~ 285 (535)
++.+++++|+++.| +|... ..+++.+. +|..- ........+.+|+.+++.+ + +||.|.++|...
T Consensus 10 P~~i~v~~GdtVt~--~N~d~-~~Hnv~~~---------~g~~~-~~~~~~~~~~~g~~~~~tf--~-~~G~y~y~C~~H 73 (83)
T TIGR02657 10 TPELHVKVGDTVTW--INREA-MPHNVHFV---------AGVLG-EAALKGPMMKKEQAYSLTF--T-EAGTYDYHCTPH 73 (83)
T ss_pred CCEEEECCCCEEEE--EECCC-CCccEEec---------CCCCc-cccccccccCCCCEEEEEC--C-CCEEEEEEcCCC
Confidence 47899999999887 56643 22323322 11100 1111233568899999755 4 489999999753
No 73
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=82.21 E-value=5.3 Score=38.66 Aligned_cols=77 Identities=12% Similarity=0.025 Sum_probs=57.4
Q ss_pred cEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecCh-hhhh-
Q 009392 54 PTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHI-LWLR- 131 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~-~~~~- 131 (535)
..|.+..|..|+++++-. +.- ||..++..+ .+.-.-||...+..+++ +++|+|.-+|+. .+..
T Consensus 137 n~l~lPv~~~V~f~ltS~-DVi-----HsF~IP~l~--------~k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVI-----HSFWIPQLG--------GKIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhc-----eeEEecCCC--------ceeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 899999999999999876 333 455544331 11235678999999997 899999999984 3344
Q ss_pred cccEEEEEEeCCCC
Q 009392 132 ATVHGAIVILPKRG 145 (535)
Q Consensus 132 ~Gl~G~iiV~~~~~ 145 (535)
..|.|.++|.++++
T Consensus 202 ~~M~~~v~vvs~~~ 215 (247)
T COG1622 202 SFMRFKVIVVSQED 215 (247)
T ss_pred ccceEEEEEEcHHH
Confidence 78999999998764
No 74
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=81.35 E-value=5.1 Score=37.59 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=56.0
Q ss_pred cEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecCh-hhhh-
Q 009392 54 PTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHI-LWLR- 131 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~-~~~~- 131 (535)
..|.+..|+.|++++++.. .+ ||..++.- |+ +.-.-||..-+..|++ +++|+|...|.. .+..
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~~----~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VI--HSFWVPEL----GG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hh--hccccccc----Cc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 5899999999999999863 12 66665432 11 1335689998889987 899999999874 2222
Q ss_pred cccEEEEEEeCCC
Q 009392 132 ATVHGAIVILPKR 144 (535)
Q Consensus 132 ~Gl~G~iiV~~~~ 144 (535)
+.|.+-++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 7888999888754
No 75
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=80.38 E-value=4.4 Score=34.35 Aligned_cols=62 Identities=13% Similarity=0.151 Sum_probs=37.0
Q ss_pred ceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecC
Q 009392 206 GFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPF 285 (535)
Q Consensus 206 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~ 285 (535)
+..++|++|++++|...+.+ +++. +.++. .|...+.+...+|+.+++.+ ++ +|.|.+.|.+.
T Consensus 14 P~~v~V~~GdTV~f~n~d~~----Hnv~---------~~~~~--~p~g~~~~~s~~g~~~~~tF--~~-~G~Y~Y~C~pH 75 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDKG----HNVE---------TIKGM--IPEGAEAFKSKINEEYTVTV--TE-EGVYGVKCTPH 75 (116)
T ss_pred CCEEEECCCCEEEEEECCCC----eeEE---------EccCC--CcCCcccccCCCCCEEEEEe--CC-CEEEEEEcCCC
Confidence 36899999999998887753 1111 11110 12112223334676666555 54 89999999854
No 76
>COG1470 Predicted membrane protein [Function unknown]
Probab=78.45 E-value=94 Score=32.77 Aligned_cols=179 Identities=16% Similarity=0.251 Sum_probs=104.6
Q ss_pred EEEecCCE--EEEEEEECC--CCCceEEeCCcccCCC-CCCCCCCCcccCcCCCCCeEEEEEEe-CCCCcceeEecChhh
Q 009392 56 LYAREHDT--VLVKVVNHV--KYNVTIHWHGVRQLRT-GWADGPAYITQCPIQSGHSYVYNFTI-TGQRGTLLWHAHILW 129 (535)
Q Consensus 56 i~~~~Gd~--v~v~v~N~l--~~~t~iH~HG~~~~~~-~~~DGvp~~tq~~i~PG~~~~Y~~~~-~~~~Gt~wYH~H~~~ 129 (535)
+++.++++ +.|++.|+- +....+-.-|+.-..+ .+.+|--.+|...+.||++.+....+ +.+-
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~n----------- 346 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLN----------- 346 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCC-----------
Confidence 45556655 667778886 3455566666553222 23466666788889999999998888 1110
Q ss_pred hhcccEEEEEEeCCCCCCCCCCCCCceEEEEEEeeccCChHHHHHHHHhCCCCCCCCceEEEcCccCCCCCCCCCCceeE
Q 009392 130 LRATVHGAIVILPKRGVPYPFPKPHKEVVVVLAEWWKSDTEAVINQALQSGLAPNVSDSHTINGQPGPISSCSSQGGFTL 209 (535)
Q Consensus 130 ~~~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~ 209 (535)
...|.|-..|+-..... ..++.++-+.- .|.. ....-+-||. ..+
T Consensus 347 a~pG~Ynv~I~A~s~s~------v~~e~~lki~~---------------~g~~--~~~v~l~~g~------------~~l 391 (513)
T COG1470 347 ATPGTYNVTITASSSSG------VTRELPLKIKN---------------TGSY--NELVKLDNGP------------YRL 391 (513)
T ss_pred CCCCceeEEEEEecccc------ceeeeeEEEEe---------------cccc--ceeEEccCCc------------EEE
Confidence 01455555555544321 23455554431 1100 0122233443 678
Q ss_pred EEeCCC--EEEEEEEEcCCCc--eEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEE--EEEeCC--CCceeEEE
Q 009392 210 PVDSGK--TYMLRIINAALNE--ELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNV--LLSADK--TSGKYLVA 281 (535)
Q Consensus 210 ~v~~G~--~~rlRliN~~~~~--~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv--~v~~~~--~~g~y~i~ 281 (535)
++++|+ ..+++|-|.|... .+.+.+++-.-+-+.+|+..+ + .|.||||-.| .++++. .+|+|.+.
T Consensus 392 t~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aGdY~i~ 464 (513)
T COG1470 392 TITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAGDYRIT 464 (513)
T ss_pred EecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCCcEEEE
Confidence 899997 5689999999554 556777766667777776633 2 3556666554 445543 35899887
Q ss_pred eecCCC
Q 009392 282 ASPFMD 287 (535)
Q Consensus 282 ~~~~~~ 287 (535)
.....+
T Consensus 465 i~~ksD 470 (513)
T COG1470 465 ITAKSD 470 (513)
T ss_pred EEEeec
Confidence 765433
No 77
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=77.38 E-value=8.3 Score=37.33 Aligned_cols=63 Identities=24% Similarity=0.300 Sum_probs=47.2
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCC
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFM 286 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~ 286 (535)
..+.++.|++++|++-... -.+.|.|. .....+..-||...+..+++++ +|.|..+|..++
T Consensus 137 n~l~lPv~~~V~f~ltS~D--ViHsF~IP----------------~l~~k~d~iPG~~~~~~~~~~~-~G~Y~g~Cae~C 197 (247)
T COG1622 137 NELVLPVGRPVRFKLTSAD--VIHSFWIP----------------QLGGKIDAIPGMTTELWLTANK-PGTYRGICAEYC 197 (247)
T ss_pred ceEEEeCCCeEEEEEEech--hceeEEec----------------CCCceeeecCCceEEEEEecCC-CeEEEEEcHhhc
Confidence 6889999999999987663 33334444 3444556678899999999997 899999999765
Q ss_pred CC
Q 009392 287 DA 288 (535)
Q Consensus 287 ~~ 288 (535)
..
T Consensus 198 G~ 199 (247)
T COG1622 198 GP 199 (247)
T ss_pred CC
Confidence 43
No 78
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=76.98 E-value=7.8 Score=32.78 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=39.0
Q ss_pred ceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecC
Q 009392 206 GFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPF 285 (535)
Q Consensus 206 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~ 285 (535)
+..++|++|++++|.--..+ ..+++.. .++... ....+.+.+|+.+++.+. .+|.|.+.|.+.
T Consensus 41 P~~ltV~~GdTVtw~~~~d~--~~HnV~s---------~~~~~f---~s~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~pH 103 (115)
T TIGR03102 41 PPAIRVDPGTTVVWEWTGEG--GGHNVVS---------DGDGDL---DESERVSEEGTTYEHTFE---EPGIYLYVCVPH 103 (115)
T ss_pred CCEEEECCCCEEEEEECCCC--CCEEEEE---------CCCCCc---cccccccCCCCEEEEEec---CCcEEEEEccCC
Confidence 36789999998886543222 2222222 222211 123345678999998884 489999999864
No 79
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=75.25 E-value=1.8 Score=23.26 Aligned_cols=15 Identities=20% Similarity=0.250 Sum_probs=10.2
Q ss_pred ChhHHHHHHHHHHHh
Q 009392 1 MDSWVRLLLLVACLF 15 (535)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (535)
|+|++++|++.+++.
T Consensus 1 MMk~vIIlvvLLliS 15 (19)
T PF13956_consen 1 MMKLVIILVVLLLIS 15 (19)
T ss_pred CceehHHHHHHHhcc
Confidence 788887766655553
No 80
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=74.37 E-value=5 Score=41.51 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=50.7
Q ss_pred cEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChh-hhh-
Q 009392 54 PTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHIL-WLR- 131 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~-~~~- 131 (535)
-++.|++||.|.+.++|-....--+ ||.-.+. -|+. .-+.|-++-.|.|.+ +.+|-+||-+--. ...
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~t--hgfv~p~----~~v~----~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLT--HGFVIPN----YGVN----MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceecccc--ceeeecc----CceE----EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHH
Confidence 3788889999998888886443333 4443221 1221 237889999999998 8999999886422 111
Q ss_pred cccEEEEEEe
Q 009392 132 ATVHGAIVIL 141 (535)
Q Consensus 132 ~Gl~G~iiV~ 141 (535)
+=|+|-++|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 4566667775
No 81
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=73.48 E-value=41 Score=26.80 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=40.7
Q ss_pred EEeCCCEEE--EEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceE-EeCCCceEEEEEEeCC-CCceeEEEeec
Q 009392 210 PVDSGKTYM--LRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNI-VIAPGQTTNVLLSADK-TSGKYLVAASP 284 (535)
Q Consensus 210 ~v~~G~~~r--lRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l-~l~pGeR~dv~v~~~~-~~g~y~i~~~~ 284 (535)
.+.+|+.++ +.+-|.|....-.+.+. +-.||..+ ....+ .|.+|+...+-+.... .+|.|.|++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 466777664 77899987654434433 33455544 34445 7899999888887664 47999988874
No 82
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=73.35 E-value=17 Score=33.03 Aligned_cols=87 Identities=15% Similarity=0.170 Sum_probs=53.4
Q ss_pred eEEEcCccCCCCCCCCCCceeEEEeCCCEEEEEEEEcCCCceEEEEEc-Cce----eEEEEeCCccc-ceeEec----eE
Q 009392 188 SHTINGQPGPISSCSSQGGFTLPVDSGKTYMLRIINAALNEELFFKIA-GHK----LTVVEVDATYV-KPFKTD----NI 257 (535)
Q Consensus 188 ~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~-gh~----~~via~DG~~v-~P~~~d----~l 257 (535)
.|-.||... ..+++-+.+|-++.+.++|..... +.+-|- .-+ --.++.||..+ .+=... .-
T Consensus 74 ~fNfnGts~--------G~mtIyiPaGw~V~V~f~N~e~~p-Hnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~N 144 (195)
T TIGR03094 74 PFNFNGTSY--------GAMTIYLPAGWNVYVTFTNYESLP-HNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGN 144 (195)
T ss_pred cccccCccC--------CceEEEEeCCCEEEEEEEcCCCCC-ccEEEecCCCCCCCccccccCceeEeecccccCccccc
Confidence 355666542 238999999999999999998443 333332 111 12255566543 111111 12
Q ss_pred EeCCCceEEEEEEeCCCCceeEEEeec
Q 009392 258 VIAPGQTTNVLLSADKTSGKYLVAASP 284 (535)
Q Consensus 258 ~l~pGeR~dv~v~~~~~~g~y~i~~~~ 284 (535)
-+..|++.+..+..- .||.||+.|.-
T Consensus 145 Gi~~Gqs~sg~~~~~-~~G~YwlvCgi 170 (195)
T TIGR03094 145 GISSGHSRSGWWNDT-SAGKYWLVCGI 170 (195)
T ss_pred cccccceeEEEeccC-CCeeEEEEccc
Confidence 356888877777765 48999999963
No 83
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=71.55 E-value=26 Score=26.37 Aligned_cols=65 Identities=12% Similarity=0.330 Sum_probs=38.2
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEee
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAAS 283 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~ 283 (535)
..|+++.|+++++.+-+.+. ...+.|...+|..+....... -..+..-.+.+.+.+ +|+|.|+..
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~~-~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAPA-AGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEESS-SEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcCC-CEEEEEEEE
Confidence 67899999998888866654 233667777765442211111 111222333345554 799999874
No 84
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=70.48 E-value=16 Score=29.65 Aligned_cols=70 Identities=11% Similarity=0.050 Sum_probs=41.8
Q ss_pred EeCCCEEEEEEE--EcCCCceEEEEEcCceeEEEEeCCcccceeEeceE-EeCCCceEEEEEEeCCCC--ceeEEEeec
Q 009392 211 VDSGKTYMLRII--NAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNI-VIAPGQTTNVLLSADKTS--GKYLVAASP 284 (535)
Q Consensus 211 v~~G~~~rlRli--N~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l-~l~pGeR~dv~v~~~~~~--g~y~i~~~~ 284 (535)
-+|||++.+|++ +... ......-....++|...+|..+.- ... .......++..+..+..+ |.|.|++..
T Consensus 11 YrPGetV~~~~~~~~~~~-~~~~~~~~~~~v~i~dp~g~~v~~---~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-DFKPPANSPVTVTIKDPSGNEVFR---WSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-TCSCESSEEEEEEEEETTSEEEEE---EEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-ccccccCCceEEEEECCCCCEEEE---EEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 689999999999 6652 111011112346666666665522 222 446778888888887653 999999875
No 85
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=67.91 E-value=45 Score=29.37 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=35.8
Q ss_pred CcEEEEecCCEEEEEEEECCCC-----CceEEeC--C-cccCC-CCCCCCCCCc-----ccCcCCCCCeEEEEEEe
Q 009392 53 GPTLYAREHDTVLVKVVNHVKY-----NVTIHWH--G-VRQLR-TGWADGPAYI-----TQCPIQSGHSYVYNFTI 114 (535)
Q Consensus 53 gP~i~~~~Gd~v~v~v~N~l~~-----~t~iH~H--G-~~~~~-~~~~DGvp~~-----tq~~i~PG~~~~Y~~~~ 114 (535)
-+.=.++.|.+..|.+.=...+ .+.+|-- | +.++. .+..||-+.. -.||+.+||.++|.+.+
T Consensus 47 t~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~sl 122 (158)
T KOG4063|consen 47 TTPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSL 122 (158)
T ss_pred CCceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEe
Confidence 3456677887766665544422 2333311 2 22221 2235664433 35999999999999987
No 86
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=66.25 E-value=33 Score=27.28 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=38.2
Q ss_pred CCcEEEEe---cCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEe
Q 009392 52 PGPTLYAR---EHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTI 114 (535)
Q Consensus 52 pgP~i~~~---~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~ 114 (535)
+.|.+.++ ....|+|+|.|.-..+..+....... ..+. ..+..|+||++.+..|.+
T Consensus 7 ~~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y-----~~~~--~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 7 YAPEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAY-----GGGG--PWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred CCCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCc-----CCCC--CEEEEECCCCEEEEEEee
Confidence 34555554 23589999999987777777665322 1111 234679999999999987
No 87
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=65.73 E-value=28 Score=35.29 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=15.0
Q ss_pred ccCcCCCCCeEEEEEEe
Q 009392 98 TQCPIQSGHSYVYNFTI 114 (535)
Q Consensus 98 tq~~i~PG~~~~Y~~~~ 114 (535)
.+.||.|||+.+.+.++
T Consensus 336 d~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 336 DQSAIAPGETVEVKMEA 352 (399)
T ss_pred CCCCcCCCcceEEEEEE
Confidence 35789999999999988
No 88
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=65.01 E-value=27 Score=30.10 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=42.0
Q ss_pred ceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecC
Q 009392 206 GFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPF 285 (535)
Q Consensus 206 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~ 285 (535)
+..+++++|++++| +|.... +|+...+ ++. .|...+.+...+++.+.+.|+. +|.|.+.|.+.
T Consensus 53 PA~v~v~pGDTVtw--~~~d~~--------~Hnv~~~--~~~--~~~g~~~~~~~~~~s~~~Tfe~---~G~Y~Y~C~PH 115 (128)
T COG3794 53 PAEVTVKPGDTVTW--VNTDSV--------GHNVTAV--GGM--DPEGSGTLKAGINESFTHTFET---PGEYTYYCTPH 115 (128)
T ss_pred CcEEEECCCCEEEE--EECCCC--------CceEEEe--CCC--CcccccccccCCCcceEEEecc---cceEEEEeccC
Confidence 36889999997665 676643 2333222 222 3444566677777888887753 79999999864
Q ss_pred C
Q 009392 286 M 286 (535)
Q Consensus 286 ~ 286 (535)
.
T Consensus 116 ~ 116 (128)
T COG3794 116 P 116 (128)
T ss_pred C
Confidence 3
No 89
>PRK01904 hypothetical protein; Provisional
Probab=62.99 E-value=12 Score=35.60 Aligned_cols=59 Identities=10% Similarity=0.106 Sum_probs=33.2
Q ss_pred ChhHHHHHHHHHHHhcccccceeEEEEEEEEEEeeeccCCceeEEEECCCCCC-------cEEEEecC--CEEEEEEEEC
Q 009392 1 MDSWVRLLLLVACLFPALVECRVRHYKFNVVMKNSTKLCSSKPIVTVNRKFPG-------PTLYAREH--DTVLVKVVNH 71 (535)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pg-------P~i~~~~G--d~v~v~v~N~ 71 (535)
||.+..++++.+|+.++++.|.+ |++.. ...++.+||+-+. -.|++..| ..|.||+.-.
T Consensus 1 MK~~~~~~~~~~l~~s~~a~A~t----L~lp~--------~i~lL~vnG~kv~~s~~~~~~~l~L~dgg~hQIv~ry~~~ 68 (219)
T PRK01904 1 MKLRKAALAVATLLTSTASFAGM----VTTSS--------NIDFLAIDGQKASKSLLKEAKSFNINDTQVHQVVVRVSEI 68 (219)
T ss_pred CchhHHHHHHHHHHHhHHhhHhe----eeCCC--------ceEEEEECCEECccccccCCcceEeCCCCceEEEEEEeec
Confidence 66666666655555555554543 44332 2456667776542 25777764 5666666543
No 90
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=62.89 E-value=24 Score=36.38 Aligned_cols=63 Identities=22% Similarity=0.329 Sum_probs=43.7
Q ss_pred ceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeec
Q 009392 206 GFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASP 284 (535)
Q Consensus 206 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~ 284 (535)
...++|++|+ ++|.+.|.+... +.|.++ +|..+. ...=.|+||....+.+.+. ||.|.+.|.+
T Consensus 43 p~~~tVpAG~-~~f~V~N~~~~~--------~Efe~~--~~~~vv---~e~EnIaPG~s~~l~~~L~--pGtY~~~C~~ 105 (375)
T PRK10378 43 PMTLTVNAGK-TQFIIQNHSQKA--------LEWEIL--KGVMVV---EERENIAPGFSQKMTANLQ--PGEYDMTCGL 105 (375)
T ss_pred cCceeeCCCC-EEEEEEeCCCCc--------ceEEee--cccccc---ccccccCCCCceEEEEecC--CceEEeecCc
Confidence 3688999996 999999998654 334444 222110 0122899998888877773 8999999954
No 91
>PRK10449 heat-inducible protein; Provisional
Probab=62.78 E-value=11 Score=33.07 Aligned_cols=44 Identities=16% Similarity=0.091 Sum_probs=24.6
Q ss_pred ChhHHHHHHHHHHHhcccccceeEEEEEEEEEEeeeccCCceeEEEECCCC
Q 009392 1 MDSWVRLLLLVACLFPALVECRVRHYKFNVVMKNSTKLCSSKPIVTVNRKF 51 (535)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~ 51 (535)
|||.+.++++.++|.+|+..... ........+....+..+||+-
T Consensus 1 mk~~~~~~~~~~~l~~C~~~~~~-------~~~~~~L~~~~W~L~~i~G~~ 44 (140)
T PRK10449 1 MKKVVALVALSLLMAGCVSSGKI-------SVTPEQLQHHRFVLESVNGKP 44 (140)
T ss_pred ChhHHHHHHHHHHHHHhcCCCCC-------CcCHHHcCCceEEEEEECCEE
Confidence 78887777777777666543221 001123455666666667753
No 92
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=60.77 E-value=28 Score=33.30 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=44.5
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCC
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFM 286 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~ 286 (535)
..+.+..|+.+||++-+... . |.|.| |...-.+..-||..-.+.+++++ ||.|...|..++
T Consensus 140 n~l~lP~~~~v~~~~ts~DV--i-------Hsf~i---------p~~~~k~d~~Pg~~~~~~~~~~~-~g~y~~~C~e~C 200 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSADV--I-------HSWTV---------PSLGVKVDAIPGRLNQLSFEPKR-PGVFYGQCSEIC 200 (228)
T ss_pred CeEEEeeCcEEEEEEEcCcc--c-------cceec---------cccCceeECCCCcceeEEEEeCC-CEEEEEECcccc
Confidence 47889999999999988543 2 44443 22222345568999999999986 899999998654
Q ss_pred C
Q 009392 287 D 287 (535)
Q Consensus 287 ~ 287 (535)
.
T Consensus 201 G 201 (228)
T MTH00140 201 G 201 (228)
T ss_pred C
Confidence 3
No 93
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=58.79 E-value=28 Score=33.31 Aligned_cols=62 Identities=15% Similarity=0.223 Sum_probs=44.9
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCC
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFM 286 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~ 286 (535)
..+.+..|+.+||++-..... |+|.| |...-....-||..-.+-+++++ +|.|...|..++
T Consensus 139 nel~lP~g~pV~~~ltS~DVi---------HSF~V---------P~l~~K~DaiPG~~n~~~~~~~~-~G~y~g~CaE~C 199 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSVM---------NSFFI---------PQLGSQIYAMAGMQTKLHLIANE-PGVYDGISANYS 199 (226)
T ss_pred ceEEEECCCEEEEEEEECchh---------hhhhh---------hhcCCeeecCCCceEEEEEEeCC-CEEEEEEchhhc
Confidence 467888899888887655422 44544 44444455568999999999997 899999998654
Q ss_pred C
Q 009392 287 D 287 (535)
Q Consensus 287 ~ 287 (535)
.
T Consensus 200 G 200 (226)
T TIGR01433 200 G 200 (226)
T ss_pred C
Confidence 3
No 94
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=58.23 E-value=1.1e+02 Score=25.62 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=11.5
Q ss_pred eeEeceEEeCCCceEEEEEEeC
Q 009392 251 PFKTDNIVIAPGQTTNVLLSAD 272 (535)
Q Consensus 251 P~~~d~l~l~pGeR~dv~v~~~ 272 (535)
+.....+.|.+|..|.+.+.-.
T Consensus 61 ~l~~~~i~l~~g~~yTl~~~g~ 82 (122)
T PF14344_consen 61 PLLSTTITLEAGKSYTLFAVGT 82 (122)
T ss_pred EEEeccEEEcCCCEEEEEEECC
Confidence 3444555555555555555443
No 95
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=57.71 E-value=13 Score=31.24 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=32.1
Q ss_pred EEEEEECCCCC---ceEEeCCcccCCCC---CCCCCCCcccCcCCCCCeEEEEEEe--CCCCcc
Q 009392 65 LVKVVNHVKYN---VTIHWHGVRQLRTG---WADGPAYITQCPIQSGHSYVYNFTI--TGQRGT 120 (535)
Q Consensus 65 ~v~v~N~l~~~---t~iH~HG~~~~~~~---~~DGvp~~tq~~i~PG~~~~Y~~~~--~~~~Gt 120 (535)
.|++.|....+ .+=|||=-...+.- ..+||-| -|.-|+||++|+|.=-+ +.+.|+
T Consensus 33 titI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVG-eQP~l~PG~~y~YtSg~~l~Tp~G~ 95 (126)
T COG2967 33 TVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVG-EQPLLAPGEEYQYTSGCPLDTPSGT 95 (126)
T ss_pred EEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceec-cccccCCCCceEEcCCcCccCCcce
Confidence 36666776544 45588733322211 1355543 46779999999997544 344554
No 96
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=57.69 E-value=61 Score=27.25 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=23.6
Q ss_pred CcEEEEecCCE-EEEEEEECCCCCceEEeCC
Q 009392 53 GPTLYAREHDT-VLVKVVNHVKYNVTIHWHG 82 (535)
Q Consensus 53 gP~i~~~~Gd~-v~v~v~N~l~~~t~iH~HG 82 (535)
-|.+....|.. -..++.|+-.++.++|.|=
T Consensus 46 ~~~l~~sd~~~~~~s~l~N~~q~pv~v~Yrf 76 (123)
T COG5633 46 KPVLSESDGQPSASSVLKNKRQEPVTVHYRF 76 (123)
T ss_pred CCeeeeeccccceeEEEeccccCceEEEEEE
Confidence 35666666666 8899999999999999873
No 97
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=56.77 E-value=29 Score=31.88 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=20.4
Q ss_pred CCCCcccCcCCCCCeEEEEEEe-CCCCccee
Q 009392 93 GPAYITQCPIQSGHSYVYNFTI-TGQRGTLL 122 (535)
Q Consensus 93 Gvp~~tq~~i~PG~~~~Y~~~~-~~~~Gt~w 122 (535)
|....+-..|+||++.++.|.+ +...|.|=
T Consensus 74 G~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~ 104 (181)
T PF05753_consen 74 GSLSASWERIPPGENVSHSYVVRPKKSGYFN 104 (181)
T ss_pred CceEEEEEEECCCCeEEEEEEEeeeeeEEEE
Confidence 3333334569999999999988 44567654
No 98
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=52.93 E-value=73 Score=30.50 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=43.0
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCC
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFM 286 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~ 286 (535)
-.+.+..|+.+|+++-+.-. . |.|.+ |...-.+..-||..-.+.+.+++ +|.|+..|.-++
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--i-------Hsf~v---------P~~~~k~daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAADV--I-------HSWTV---------PSLGVKVDAVPGRLNQIGFTITR-PGVFYGQCSEIC 200 (228)
T ss_pred ceEEEecCCEEEEEEEeCCc--c-------ccccc---------cccCcceecCCCceEEEEEEeCC-CEEEEEEChhhc
Confidence 46788999999999887542 2 44443 22222344458899999999886 899999998654
No 99
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=51.98 E-value=64 Score=24.79 Aligned_cols=64 Identities=20% Similarity=0.386 Sum_probs=30.7
Q ss_pred EeCCCEE--EEEEEEcCCCc--eEEEEEcCceeEEEEeCCccc--ceeEeceEEeCCCceEEEEEEeC--C--CCceeEE
Q 009392 211 VDSGKTY--MLRIINAALNE--ELFFKIAGHKLTVVEVDATYV--KPFKTDNIVIAPGQTTNVLLSAD--K--TSGKYLV 280 (535)
Q Consensus 211 v~~G~~~--rlRliN~~~~~--~~~~~i~gh~~~via~DG~~v--~P~~~d~l~l~pGeR~dv~v~~~--~--~~g~y~i 280 (535)
|++|+.. .+.+-|.|... ...+++. .-+|=.+ .|.... .|.|||...+-++.. . .+|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 3567654 57788988543 3344443 2233221 344444 889997766655544 2 3689998
Q ss_pred Eee
Q 009392 281 AAS 283 (535)
Q Consensus 281 ~~~ 283 (535)
.+.
T Consensus 72 ~~~ 74 (78)
T PF10633_consen 72 TVT 74 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 100
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.08 E-value=71 Score=30.61 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=42.6
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCC
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFM 286 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~ 286 (535)
..+.+..|+.+|+++-..-. . |.|.+ |...-.+..-||.+-.+.+.+++ ||.|+..|..++
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--i-------Hsf~i---------p~~~~k~da~PG~~~~~~~~~~~-~G~~~g~C~e~C 200 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAEDV--L-------HSWAV---------PALGVKMDAVPGRLNQTAFIASR-PGVFYGQCSEIC 200 (230)
T ss_pred ceEEEecCcEEEEEEEeCcc--c-------cceec---------cccCCccccCCCceEEEEEEeCC-ceEEEEEChhhc
Confidence 46789999988888865542 2 44444 22222344558999999999986 899999998654
No 101
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=49.67 E-value=56 Score=31.27 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=41.6
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCC
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFM 286 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~ 286 (535)
-.+.+..|+.+||++--... . |.|.| |...-.+..-||..-.+-+.+++ ||.|+..|..++
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--i-------Hsf~i---------p~lg~k~daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDV--L-------HSWAV---------PSLGLKTDAIPGRLNQTTLMSTR-PGLYYGQCSEIC 200 (227)
T ss_pred ceEEecCCCEEEEEEEECcc--c-------ccccc---------cccccceecCCCceEEEEEecCC-cEEEEEECcccc
Confidence 36788899988888865543 2 33433 22222334458888888888886 899999998654
No 102
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=49.43 E-value=42 Score=31.82 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=44.2
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCC
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFM 286 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~ 286 (535)
..+.+..|+.+||++-.... . |+|.| |...-....-||..-.+-+++++ +|.|...|..++
T Consensus 130 n~l~iP~g~~v~~~ltS~DV--i-------Hsf~v---------P~l~~k~daiPG~~~~~~~~~~~-~G~y~g~Cae~C 190 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSADT--M-------TSFWI---------PQLGGQKYAMTGMTMNWYLQADQ-VGTYRGRNANFN 190 (217)
T ss_pred CcEEEECCCEEEEEEECCch--h-------hhhhc---------hhhCceeecCCCceEEEEEEeCC-CEEEEEEehhhc
Confidence 46778888888888765543 1 44444 44444455568999999999996 899999998654
Q ss_pred C
Q 009392 287 D 287 (535)
Q Consensus 287 ~ 287 (535)
.
T Consensus 191 G 191 (217)
T TIGR01432 191 G 191 (217)
T ss_pred C
Confidence 3
No 103
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=48.75 E-value=13 Score=30.44 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=28.8
Q ss_pred EEEECCCCCCcEEEEecCCEEEEEEEECCCCCceE
Q 009392 44 IVTVNRKFPGPTLYAREHDTVLVKVVNHVKYNVTI 78 (535)
Q Consensus 44 ~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~~~t~i 78 (535)
-+.+||+.--|-=.|+.||.|+|++.|..-.-..+
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~~~~~v~Vl 69 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGNKEFTVKVL 69 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCCcEEEEEEE
Confidence 46799998889999999999999999996543333
No 104
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=48.49 E-value=28 Score=26.89 Aligned_cols=60 Identities=23% Similarity=0.342 Sum_probs=26.2
Q ss_pred ecCCE--EEEEEEECCCCC---ceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEe----CCCCccee
Q 009392 59 REHDT--VLVKVVNHVKYN---VTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTI----TGQRGTLL 122 (535)
Q Consensus 59 ~~Gd~--v~v~v~N~l~~~---t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~----~~~~Gt~w 122 (535)
.+|+. +.++|.|....+ ..+-+- .+.+|....-..+-..|+||++.+..|.+ +-.+|+|-
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~----~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~ 70 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLS----LPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYT 70 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE------TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEe----CCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEE
Confidence 34543 456777876433 222221 13455521111111369999999998888 23468764
No 105
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=48.16 E-value=64 Score=30.05 Aligned_cols=61 Identities=16% Similarity=0.289 Sum_probs=43.2
Q ss_pred eEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCCC
Q 009392 208 TLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFMD 287 (535)
Q Consensus 208 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~~ 287 (535)
.+.++.|+.+||++-..- -.+.|.+.+.. -.+..-||..-.+.+++++ +|.|...|..++.
T Consensus 117 ~l~lp~g~~v~~~ltS~D--ViHsf~vp~l~----------------~k~d~~PG~~~~~~~~~~~-~G~y~g~C~e~CG 177 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD--VIHSFSVPDLN----------------LKMDAIPGRINHLFFCPDR-HGVFVGYCSELCG 177 (194)
T ss_pred eEEEeCCCEEEeeeecCc--cccceeccccC----------------ceeecCCCceEEEEEEcCC-CEEEEEEeehhhC
Confidence 578999999999986554 23334444322 2344558999999999886 8999999986543
No 106
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=45.51 E-value=67 Score=32.72 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=11.2
Q ss_pred cCcCCCCCeEEEEEEe
Q 009392 99 QCPIQSGHSYVYNFTI 114 (535)
Q Consensus 99 q~~i~PG~~~~Y~~~~ 114 (535)
..||+|||+.+.+.++
T Consensus 318 ~~pI~PGETrtl~V~a 333 (381)
T PF04744_consen 318 NSPIAPGETRTLTVEA 333 (381)
T ss_dssp -S-B-TT-EEEEEEEE
T ss_pred CCCcCCCceEEEEEEe
Confidence 3589999999999998
No 107
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=44.98 E-value=81 Score=30.16 Aligned_cols=77 Identities=13% Similarity=0.063 Sum_probs=51.3
Q ss_pred CcEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChh-hhh
Q 009392 53 GPTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHIL-WLR 131 (535)
Q Consensus 53 gP~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~-~~~ 131 (535)
...+.+-.|..|++.+++.. .| |+..++.- | +. .-.-||..-...|++ +++|+|+-.|..- |..
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D----Vi--Hsf~ip~~----~---~k-~d~~Pg~~~~~~~~~-~~~g~y~~~C~e~CG~~ 203 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD----VI--HSWTVPSL----G---VK-VDAIPGRLNQLSFEP-KRPGVFYGQCSEICGAN 203 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc----cc--cceecccc----C---ce-eECCCCcceeEEEEe-CCCEEEEEECccccCcC
Confidence 36789999999999999963 22 55554432 1 11 123478888888887 8999998887632 222
Q ss_pred -cccEEEEEEeCCC
Q 009392 132 -ATVHGAIVILPKR 144 (535)
Q Consensus 132 -~Gl~G~iiV~~~~ 144 (535)
+.|.+.++|.+++
T Consensus 204 H~~M~~~v~v~~~~ 217 (228)
T MTH00140 204 HSFMPIVVEAVPLE 217 (228)
T ss_pred cCCCeEEEEEECHH
Confidence 5677777776543
No 108
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=44.36 E-value=1e+02 Score=29.56 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=42.5
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCC
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFM 286 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~ 286 (535)
..+.+..|+.+|+++-++-. . |.|.| |...-.+..-||..-.+.+.+++ +|.|...|..++
T Consensus 144 n~lvlP~~~~v~~~itS~DV--i-------Hsf~v---------p~lg~k~daiPG~~~~~~~~~~~-~G~y~g~Cse~C 204 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAADV--L-------HSFAV---------PSLSVKIDAVPGRLNQTSFFIKR-PGVFYGQCSEIC 204 (234)
T ss_pred eEEEEecCcEEEEEEEeCch--h-------ccccc---------cccCceeEccCCceEeEEEEeCC-CEEEEEEChhhc
Confidence 46789999999999887642 2 34443 22222334457888888888886 899999998654
No 109
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=43.98 E-value=34 Score=29.49 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=13.4
Q ss_pred CCCCCCcccCcCCCCCeEEEEEE
Q 009392 91 ADGPAYITQCPIQSGHSYVYNFT 113 (535)
Q Consensus 91 ~DGvp~~tq~~i~PG~~~~Y~~~ 113 (535)
.+||-| .|.-|.||++|+|.=-
T Consensus 66 G~GVVG-~qP~L~PGe~F~Y~S~ 87 (127)
T PRK05461 66 GEGVVG-EQPVLAPGESFEYTSG 87 (127)
T ss_pred CCceec-CCceECCCCCeEEeCC
Confidence 345432 2344799998888643
No 110
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.69 E-value=1.2e+02 Score=29.00 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=42.3
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCC
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFM 286 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~ 286 (535)
..+.+..|+.+|+++-.... . |.|.+ |...-.+..-||..-.+.+.+++ ||.|...|..++
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--i-------Hsf~i---------P~lg~k~daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (230)
T MTH00185 140 HRMVVPMESPIRVLITAEDV--L-------HSWTV---------PALGVKMDAVPGRLNQATFIISR-PGLYYGQCSEIC 200 (230)
T ss_pred CeEEEecCCEEEEEEEcCcc--c-------ccccc---------cccCceeEecCCceEEEEEEeCC-cEEEEEEchhhc
Confidence 46789999988888765543 2 33433 22222344458888888888886 899999998654
Q ss_pred C
Q 009392 287 D 287 (535)
Q Consensus 287 ~ 287 (535)
.
T Consensus 201 G 201 (230)
T MTH00185 201 G 201 (230)
T ss_pred C
Confidence 3
No 111
>PRK13202 ureB urease subunit beta; Reviewed
Probab=42.81 E-value=71 Score=26.25 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=42.3
Q ss_pred EEEEecC--CEEEEEEEECCCCCceE--EeCCcccCCCCCCC-----C----CCCcccCcCCCCCeEEEEEEeCCCCcc
Q 009392 55 TLYAREH--DTVLVKVVNHVKYNVTI--HWHGVRQLRTGWAD-----G----PAYITQCPIQSGHSYVYNFTITGQRGT 120 (535)
Q Consensus 55 ~i~~~~G--d~v~v~v~N~l~~~t~i--H~HG~~~~~~~~~D-----G----vp~~tq~~i~PG~~~~Y~~~~~~~~Gt 120 (535)
.|++++| .++.|+|.|.-+++.-+ |+|=......-..| | .|.-|...+.||++.+.+.-. -.|.
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~--~gG~ 88 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP--LGGR 88 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE--ccCC
Confidence 5999999 59999999999887554 77655443322122 1 333345667889888887753 4454
No 112
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=42.35 E-value=86 Score=26.27 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=28.5
Q ss_pred EEEEEEEEcCCCc-eEEEEEcCce-eEEEEeCCcccceeEeceEEeCCCceEEEEEEeCC
Q 009392 216 TYMLRIINAALNE-ELFFKIAGHK-LTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADK 273 (535)
Q Consensus 216 ~~rlRliN~~~~~-~~~~~i~gh~-~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~ 273 (535)
.|+++|+|.+... .+.++++|.+ +++. .....+.|.+|+..++-|...-
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~---------~~~~~i~v~~g~~~~~~v~v~~ 84 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ---------GPENTITVPPGETREVPVFVTA 84 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE---------CCCcceEECCCCEEEEEEEEEE
Confidence 5899999999665 6677777642 3321 1346888999998887665543
No 113
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=41.96 E-value=77 Score=26.24 Aligned_cols=70 Identities=20% Similarity=0.325 Sum_probs=42.2
Q ss_pred EEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChhhhhcccEEEEEEeCC
Q 009392 65 LVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHILWLRATVHGAIVILPK 143 (535)
Q Consensus 65 ~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~Gl~G~iiV~~~ 143 (535)
.|.++|.|.....|..|=-.-. -| +....+.||+++..+|.. +--|+--|.|+..........-+.|...
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~d----~D----lg~~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSKD----DD----LGWHVLKPGQSYSFSFRD-NFFGTTLFWCHFRWPGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCCC----cc----CCCEECCCCCEEEEEEec-CcCCceeEEEEEEECCccEEEEEEEEec
Confidence 4889999965544544432210 12 112458999999999986 5557777778765411223555655544
No 114
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=41.96 E-value=1.2e+02 Score=25.76 Aligned_cols=72 Identities=18% Similarity=0.161 Sum_probs=42.0
Q ss_pred EEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccce----eEeceEEeCCCceEEEEEEeCC--CCceeEEEee
Q 009392 210 PVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKP----FKTDNIVIAPGQTTNVLLSADK--TSGKYLVAAS 283 (535)
Q Consensus 210 ~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P----~~~d~l~l~pGeR~dv~v~~~~--~~g~y~i~~~ 283 (535)
.+..|+.+++|+-=......-.+.+ .+.+...+|..+-- .....+....++++.+.++++. .+|.|.|.+.
T Consensus 30 ~~~~ge~~~i~i~~~~~~~i~~~~~---~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~v~ 106 (142)
T PF14524_consen 30 SFESGEPIRIRIDYEVNEDIDDPVF---GFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSISVG 106 (142)
T ss_dssp SEETTSEEEEEEEEEESS-EEEEEE---EEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEEEE
T ss_pred EEeCCCEEEEEEEEEECCCCCccEE---EEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEEEE
Confidence 4788999988885444333333332 36667777766521 1223455555899999988886 3799999886
Q ss_pred c
Q 009392 284 P 284 (535)
Q Consensus 284 ~ 284 (535)
.
T Consensus 107 l 107 (142)
T PF14524_consen 107 L 107 (142)
T ss_dssp E
T ss_pred E
Confidence 4
No 115
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=41.93 E-value=86 Score=27.01 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=34.1
Q ss_pred EEEEEEEEcCCCceEEEEEcCceeEEEEeCCccc----ceeEeceEEeCCCceEEE
Q 009392 216 TYMLRIINAALNEELFFKIAGHKLTVVEVDATYV----KPFKTDNIVIAPGQTTNV 267 (535)
Q Consensus 216 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v----~P~~~d~l~l~pGeR~dv 267 (535)
.|++||.|.+... +.|-...+.+...||... +.+....=.|.|||.+..
T Consensus 32 ~Y~ItI~N~~~~~---vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRVP---VQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCCC---EEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 4789999988543 567777888888887642 123445557888887765
No 116
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=41.50 E-value=61 Score=32.65 Aligned_cols=62 Identities=13% Similarity=0.239 Sum_probs=46.7
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCC
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFM 286 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~ 286 (535)
..+.+..|+.+||++-..... |.|.| |...-.+..-||..-.+.+.+++ +|.|...|..++
T Consensus 151 NeL~iP~g~pV~f~lTS~DVi---------HSF~I---------P~Lg~K~damPG~~n~l~~~a~~-~G~Y~G~CaEyC 211 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSNSVM---------NSFFI---------PRLGSQIYAMAGMQTRLHLIANE-PGTYDGISASYS 211 (315)
T ss_pred ccEEEecCCEEEEEEEEchhh---------hhhhh---------hhhCCeeecCCCceeEEEEEcCC-CEEEEEEChhhc
Confidence 467899999999998776642 44444 44455566668888899999986 899999998765
Q ss_pred C
Q 009392 287 D 287 (535)
Q Consensus 287 ~ 287 (535)
.
T Consensus 212 G 212 (315)
T PRK10525 212 G 212 (315)
T ss_pred C
Confidence 4
No 117
>PF07437 YfaZ: YfaZ precursor; InterPro: IPR009998 This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=41.37 E-value=31 Score=31.70 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=18.8
Q ss_pred ChhHHHHHHHHHHHhcccccceeEEEEEEEEEEe
Q 009392 1 MDSWVRLLLLVACLFPALVECRVRHYKFNVVMKN 34 (535)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 34 (535)
|||+.++.++.+++.++.|.|. .+++.+.+..
T Consensus 1 m~k~~~a~~~~l~~~s~~a~A~--~~~~~~g~~~ 32 (180)
T PF07437_consen 1 MKKFLLASAAALLLVSASANAI--SLSLNLGNDY 32 (180)
T ss_pred CchHHHHHHHHHHHHhhhhhee--ecceeccCce
Confidence 8888776665555555555443 5555555443
No 118
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=40.66 E-value=41 Score=29.81 Aligned_cols=71 Identities=10% Similarity=0.082 Sum_probs=41.0
Q ss_pred ceeEEEEEEEEEEeeeccCCceeEEEECCCC-CCcEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCC
Q 009392 21 CRVRHYKFNVVMKNSTKLCSSKPIVTVNRKF-PGPTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAY 96 (535)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~-pgP~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~ 96 (535)
.....|-++.++...... ...+.+.+.|.+ +|..-+. .|..++++++-. .....++..|.. +..+.+|..-
T Consensus 31 ~~~~~yf~tpse~~~~~~-~~g~~vrvgG~V~~gSi~~~-~~~~~~F~ltD~-~~~i~V~Y~G~l--Pd~F~eg~~V 102 (148)
T PRK13254 31 RQNIVFFYTPSEVAEGEA-PAGRRFRLGGLVEKGSVQRG-DGLTVRFVVTDG-NATVPVVYTGIL--PDLFREGQGV 102 (148)
T ss_pred HhCCceeeCHHHHhcCCc-cCCCeEEEeEEEecCcEEeC-CCCEEEEEEEeC-CeEEEEEECCCC--CccccCCCEE
Confidence 344556665555433222 233445555655 4433333 788889988876 566788888864 3445666543
No 119
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=40.08 E-value=64 Score=25.91 Aligned_cols=50 Identities=18% Similarity=0.310 Sum_probs=29.5
Q ss_pred EEEEEEEEcCCCceEEEEEcCceeEEEEeCCccc--c--eeEeceEEeCCCceEEEE
Q 009392 216 TYMLRIINAALNEELFFKIAGHKLTVVEVDATYV--K--PFKTDNIVIAPGQTTNVL 268 (535)
Q Consensus 216 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v--~--P~~~d~l~l~pGeR~dv~ 268 (535)
.|++||-|.+... +.|-...+.+...||..- + -+....=.|.|||.+..-
T Consensus 15 ~Y~I~I~N~~~~~---vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~ 68 (90)
T PF04379_consen 15 AYRIRIENHSDES---VQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYT 68 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEE
T ss_pred EEEEEEEECCCCC---EEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEc
Confidence 4789999998763 566667777777777432 1 122345578999977653
No 120
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=38.89 E-value=93 Score=29.79 Aligned_cols=17 Identities=12% Similarity=0.503 Sum_probs=12.6
Q ss_pred cEEEEecCCEEEEEEEE
Q 009392 54 PTLYAREHDTVLVKVVN 70 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N 70 (535)
|.+|+.+|+.-.||+.-
T Consensus 75 Plfrl~p~~~q~lRI~~ 91 (229)
T PRK15211 75 PFFKVRPKEKQIIRIMK 91 (229)
T ss_pred CeEEECCCCceEEEEEE
Confidence 77888888777777654
No 121
>PRK10397 lipoprotein; Provisional
Probab=38.68 E-value=1.4e+02 Score=25.48 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=21.4
Q ss_pred EEEecCCEEEEEEEECC----CCCceEEeCCccc
Q 009392 56 LYAREHDTVLVKVVNHV----KYNVTIHWHGVRQ 85 (535)
Q Consensus 56 i~~~~Gd~v~v~v~N~l----~~~t~iH~HG~~~ 85 (535)
|....+|.+.|+..+++ -+..++|..|+..
T Consensus 80 lt~~~~~~~NVt~~~~v~~le~~g~~L~Ydgmtl 113 (137)
T PRK10397 80 LTLRSDDLTNVTVKRELYELERDGNTLEYDGMTL 113 (137)
T ss_pred eeeecCceEEeeeeeEEEEEEecCCEEEecceEE
Confidence 44556777777777775 3678899999874
No 122
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=38.38 E-value=1.4e+02 Score=28.50 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=12.4
Q ss_pred cEEEEecCCEEEEEEEE
Q 009392 54 PTLYAREHDTVLVKVVN 70 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N 70 (535)
|.+|+++|+.-.||+..
T Consensus 74 Pl~rl~p~~~q~lRIi~ 90 (228)
T PRK15208 74 PLFKLDPTKNNVLRIVN 90 (228)
T ss_pred CeEEECCCCccEEEEEE
Confidence 67777777777777664
No 123
>PRK13792 lysozyme inhibitor; Provisional
Probab=38.08 E-value=1.8e+02 Score=25.04 Aligned_cols=11 Identities=36% Similarity=0.377 Sum_probs=5.7
Q ss_pred ChhHHHHHHHH
Q 009392 1 MDSWVRLLLLV 11 (535)
Q Consensus 1 ~~~~~~~~~~~ 11 (535)
|||.+.+||+.
T Consensus 1 mk~~l~~ll~~ 11 (127)
T PRK13792 1 MKKALWLLLAA 11 (127)
T ss_pred ChhHHHHHHHH
Confidence 77774443333
No 124
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.64 E-value=1.3e+02 Score=28.74 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=42.1
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCC
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFM 286 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~ 286 (535)
-.+.+..|+.+|+++-.+-.. |.|.| |...-.+..-||..-.+.+.+++ ||.|+..|..++
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi---------Hsf~v---------P~lg~K~DavPG~~n~~~~~~~~-~G~y~g~CsE~C 200 (227)
T MTH00117 140 HRMVIPMESPIRILITAEDVL---------HSWAV---------PSLGVKTDAVPGRLNQTSFITTR-PGVFYGQCSEIC 200 (227)
T ss_pred ceEEEecCceEEEEEEecchh---------hcccc---------cccCceeEecCCceEEEEEEEcc-cceEEEEecccc
Confidence 367888999888887655432 44443 32223344458888888888886 899999998654
No 125
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=37.44 E-value=2.2e+02 Score=22.87 Aligned_cols=59 Identities=22% Similarity=0.366 Sum_probs=36.2
Q ss_pred EEeCCCEE--EEEEEEcCCCceEEEEEc--C---ceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeC-C-CCceeEE
Q 009392 210 PVDSGKTY--MLRIINAALNEELFFKIA--G---HKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSAD-K-TSGKYLV 280 (535)
Q Consensus 210 ~v~~G~~~--rlRliN~~~~~~~~~~i~--g---h~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~-~-~~g~y~i 280 (535)
.+..|+++ .+.|.|.|... .+|++. . ..|.+ +| ..-.|+||+..++.|.+. . +.|.|.-
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p-~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIP-ARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EEccCCEEEEEEEEEECCCCC-EEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 45667776 49999998654 344443 2 11111 22 234699999999999887 2 3466543
No 126
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=37.40 E-value=2.2e+02 Score=24.30 Aligned_cols=61 Identities=8% Similarity=0.077 Sum_probs=41.6
Q ss_pred eEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCccc-------ceeEeceEEeCCCceEEEEEEeCC
Q 009392 208 TLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYV-------KPFKTDNIVIAPGQTTNVLLSADK 273 (535)
Q Consensus 208 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v-------~P~~~d~l~l~pGeR~dv~v~~~~ 273 (535)
.|++..-..|+|++-..+ ..++.|+|..+ |+.++..- .+....++.|..|++|+|-|...+
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 466766667999998443 46678988764 66665432 355677889999999999888665
No 127
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=35.99 E-value=2.3e+02 Score=24.10 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=36.7
Q ss_pred eEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCccc-ceeEeceEEeCCCceEEEEEEeCC
Q 009392 208 TLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYV-KPFKTDNIVIAPGQTTNVLLSADK 273 (535)
Q Consensus 208 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v-~P~~~d~l~l~pGeR~dv~v~~~~ 273 (535)
.|+++....|+|.+...+ ..++.|+|.. ||+.++..- .+.....+.|..|++|.|.|..-+
T Consensus 51 ~i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 51 YLKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EEECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEe
Confidence 455555556888885433 3567888753 444443321 233445677888888888877654
No 128
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=35.92 E-value=2.4e+02 Score=24.80 Aligned_cols=64 Identities=27% Similarity=0.391 Sum_probs=45.3
Q ss_pred CEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeE-------eceEEeCCCceE-EEEEEeCCCCceeEEEee
Q 009392 215 KTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFK-------TDNIVIAPGQTT-NVLLSADKTSGKYLVAAS 283 (535)
Q Consensus 215 ~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~-------~d~l~l~pGeR~-dv~v~~~~~~g~y~i~~~ 283 (535)
.+|-|-+-|.|... +.++.-.++|+ +||..+.|.. .+.+.|.|||-- ++.+.-.- .|.-.+...
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~l-SGyhri~V~ 141 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEAL-SGYHRIVVS 141 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccCC-CcceEEEEE
Confidence 46889999999655 46788888887 7998886533 356779999987 66665443 365555544
No 129
>PF15240 Pro-rich: Proline-rich
Probab=35.83 E-value=19 Score=32.80 Aligned_cols=16 Identities=31% Similarity=0.191 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhcccc
Q 009392 4 WVRLLLLVACLFPALV 19 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (535)
|++|||-|+||++|.|
T Consensus 1 MLlVLLSvALLALSSA 16 (179)
T PF15240_consen 1 MLLVLLSVALLALSSA 16 (179)
T ss_pred ChhHHHHHHHHHhhhc
Confidence 4566666777766666
No 130
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=35.69 E-value=1.5e+02 Score=28.36 Aligned_cols=16 Identities=6% Similarity=0.380 Sum_probs=9.8
Q ss_pred cEEEEecCCEEEEEEE
Q 009392 54 PTLYAREHDTVLVKVV 69 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~ 69 (535)
|.+|+.+|++-.||+.
T Consensus 80 Plfrl~~~~~~~lRI~ 95 (228)
T PRK15188 80 PLFVIQPKKENILRIM 95 (228)
T ss_pred CeEEECCCCceEEEEE
Confidence 5666666666555554
No 131
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.67 E-value=1.8e+02 Score=27.75 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=41.0
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCC
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFM 286 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~ 286 (535)
-.+.+..|+.+|+++--.-. .+.|.+.+..+ .+..-||..-.+.+.+++ +|.|...|..++
T Consensus 140 n~l~lP~~~~v~~~~tS~DV--iHsf~vP~lg~----------------k~da~PG~~n~~~~~~~~-~G~~~g~C~e~C 200 (228)
T MTH00076 140 NRMVVPMESPIRMLITAEDV--LHSWAVPSLGI----------------KTDAIPGRLNQTSFIASR-PGVYYGQCSEIC 200 (228)
T ss_pred ceEEEecCCEEEEEEEeccc--cccccccccCc----------------eEEccCCcceeEEEEeCC-cEEEEEEChhhc
Confidence 46789999999888865542 23333333222 233447888888888886 899999998654
No 132
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=35.42 E-value=2.6e+02 Score=25.17 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=40.7
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCC
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFM 286 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~ 286 (535)
..+.+..|+.+||++..+-. .+.|.+.+..+ .+..-||..-.+.+.+++ +|.|...|.-++
T Consensus 73 n~LvLP~g~~Vr~~lTS~DV--IHSF~VP~lgv----------------K~DavPGr~n~l~~~~~~-~G~y~gqCsElC 133 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITATDV--IHSWSVPSLGI----------------KADAIPGRLHKINTFILR-EGVFYGQCSEMC 133 (162)
T ss_pred CCEEEeCCCEEEEEEEeCcc--ceeeeccccCc----------------eeeccCCceEEEEEecCC-CeEEEEEcchhc
Confidence 35778899988887765543 23344443332 233346777777787775 899999998654
Q ss_pred C
Q 009392 287 D 287 (535)
Q Consensus 287 ~ 287 (535)
.
T Consensus 134 G 134 (162)
T PTZ00047 134 G 134 (162)
T ss_pred C
Confidence 3
No 133
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=35.35 E-value=29 Score=27.28 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=23.7
Q ss_pred ceeEEEECCCCCCcEEEEecCCEEEEE
Q 009392 41 SKPIVTVNRKFPGPTLYAREHDTVLVK 67 (535)
Q Consensus 41 ~~~~~~~NG~~pgP~i~~~~Gd~v~v~ 67 (535)
+...+.+||+.-++.-+++.||+|.|.
T Consensus 48 EV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 48 EVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HeEEEEECCEECCCcccCCCCCEEEEE
Confidence 456899999999999999999998874
No 134
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=34.70 E-value=2.3e+02 Score=22.35 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=36.4
Q ss_pred CEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEee
Q 009392 215 KTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAAS 283 (535)
Q Consensus 215 ~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~ 283 (535)
..++|.|.|.|... ..|.+.. ... ......++.|.+|++.++.+.....-|-|-+..+
T Consensus 20 g~l~l~l~N~g~~~-~~~~v~~-------~~y---~~~~~~~~~v~ag~~~~~~w~l~~s~gwYDl~v~ 77 (89)
T PF05506_consen 20 GNLRLTLSNPGSAA-VTFTVYD-------NAY---GGGGPWTYTVAAGQTVSLTWPLAASGGWYDLTVT 77 (89)
T ss_pred CEEEEEEEeCCCCc-EEEEEEe-------CCc---CCCCCEEEEECCCCEEEEEEeecCCCCcEEEEEE
Confidence 37899999997544 2234332 111 1122367888889988888887554566666665
No 135
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=33.95 E-value=53 Score=28.97 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=23.0
Q ss_pred cCcCCCCCeEEEEEEe---CCCCcceeEecCh
Q 009392 99 QCPIQSGHSYVYNFTI---TGQRGTLLWHAHI 127 (535)
Q Consensus 99 q~~i~PG~~~~Y~~~~---~~~~Gt~wYH~H~ 127 (535)
+.||+||++++..++. +...|+|-|++-.
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 4789999999999944 4456999998754
No 136
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=33.71 E-value=1.2e+02 Score=24.75 Aligned_cols=64 Identities=23% Similarity=0.187 Sum_probs=42.3
Q ss_pred EEEEecC-CEEEEEEEECCCCCceE--EeCCcccCCCCCCC-----C----CCCcccCcCCCCCeEEEEEEeCCCCcc
Q 009392 55 TLYAREH-DTVLVKVVNHVKYNVTI--HWHGVRQLRTGWAD-----G----PAYITQCPIQSGHSYVYNFTITGQRGT 120 (535)
Q Consensus 55 ~i~~~~G-d~v~v~v~N~l~~~t~i--H~HG~~~~~~~~~D-----G----vp~~tq~~i~PG~~~~Y~~~~~~~~Gt 120 (535)
.|++++| .++.|.|.|.-+++.-+ |+|=......-..| | .|.-|...+.||++.+.+.-. -.|.
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~--~gG~ 87 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVA--IGGN 87 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEE--ccCc
Confidence 5889998 88999999999887554 77655443322122 1 333345667889988887753 4444
No 137
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=33.56 E-value=97 Score=27.86 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=43.0
Q ss_pred eeEEeeCCCEEEEEEecCCCCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEECCCCC
Q 009392 431 KAYRLAYNSTVQLILQDTGIIAPENHPVHLHGFNFFAVGKGLGNFNPKKDPKKFNLVDPVERNTIGVPSGGWVAIRXXXX 510 (535)
Q Consensus 431 ~~~~v~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~RDTv~vp~~g~~virf~ad 510 (535)
+.+.++.|+.+++.+... +..|.|.+-.--..+ |.+ ||-...+.|.++
T Consensus 73 n~LvLP~g~~Vr~~lTS~----DVIHSF~VP~lgvK~-------------------------Dav---PGr~n~l~~~~~ 120 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITAT----DVIHSWSVPSLGIKA-------------------------DAI---PGRLHKINTFIL 120 (162)
T ss_pred CCEEEeCCCEEEEEEEeC----ccceeeeccccCcee-------------------------ecc---CCceEEEEEecC
Confidence 346899999999999864 455665554332221 222 344456777889
Q ss_pred CCCCCeeeec----cCceeee
Q 009392 511 XXXXAQIIQE----YGLCIAI 527 (535)
Q Consensus 511 nPG~w~~HCH----~gm~~~~ 527 (535)
.||.+...|. .||..|-
T Consensus 121 ~~G~y~gqCsElCG~gHs~M~ 141 (162)
T PTZ00047 121 REGVFYGQCSEMCGTLHGFMP 141 (162)
T ss_pred CCeEEEEEcchhcCcCccCce
Confidence 9999999998 4555543
No 138
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=32.90 E-value=45 Score=31.87 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=45.9
Q ss_pred eeEEeeCCCEEEEEEecCCCCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEECCCCC
Q 009392 431 KAYRLAYNSTVQLILQDTGIIAPENHPVHLHGFNFFAVGKGLGNFNPKKDPKKFNLVDPVERNTIGVPSGGWVAIRXXXX 510 (535)
Q Consensus 431 ~~~~v~~g~~v~~vl~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~RDTv~vp~~g~~virf~ad 510 (535)
+.+.+|.|+.|++.+... +..|. |+|=+.+. .+|.+ ||-...+.|++|
T Consensus 139 nel~lP~g~pV~~~ltS~----DViHS-------F~VP~l~~------------------K~Dai---PG~~n~~~~~~~ 186 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSN----SVMNS-------FFIPQLGS------------------QIYAM---AGMQTKLHLIAN 186 (226)
T ss_pred ceEEEECCCEEEEEEEEC----chhhh-------hhhhhcCC------------------eeecC---CCceEEEEEEeC
Confidence 356899999999999874 44454 55554431 22444 355677888999
Q ss_pred CCCCCeeeec----cCceeeeee
Q 009392 511 XXXXAQIIQE----YGLCIAIWK 529 (535)
Q Consensus 511 nPG~w~~HCH----~gm~~~~~~ 529 (535)
.||.+.-.|- .||..|...
T Consensus 187 ~~G~y~g~CaE~CG~~Ha~M~~~ 209 (226)
T TIGR01433 187 EPGVYDGISANYSGPGFSGMKFK 209 (226)
T ss_pred CCEEEEEEchhhcCcCccCCeEE
Confidence 9999999997 555555443
No 139
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=32.33 E-value=1.3e+02 Score=22.36 Aligned_cols=47 Identities=13% Similarity=0.330 Sum_probs=26.6
Q ss_pred EEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEE
Q 009392 209 LPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNV 267 (535)
Q Consensus 209 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv 267 (535)
+.+.+|+..+||.-... .+.+.+-..+|.. +| ..+-+.|.+||++.+
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g------~~~D~~L~~G~~l~l 48 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EG------DPDDYWLQAGDSLRL 48 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CC------CCCCEEECCCCEEEe
Confidence 56778888888854433 2566666666642 33 233445555555543
No 140
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=32.15 E-value=1.5e+02 Score=28.26 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=14.5
Q ss_pred cEEEEecCCEEEEEEEEC
Q 009392 54 PTLYAREHDTVLVKVVNH 71 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N~ 71 (535)
|.+|+.+|+.-.||+...
T Consensus 75 PlfRl~p~~~~~lRI~~~ 92 (226)
T PRK15218 75 PVIRVAANSGQQLKIKKL 92 (226)
T ss_pred CeEEECCCCceEEEEEEC
Confidence 789999988888887753
No 141
>PRK13203 ureB urease subunit beta; Reviewed
Probab=31.88 E-value=1.4e+02 Score=24.54 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=42.2
Q ss_pred EEEEecC-CEEEEEEEECCCCCceE--EeCCcccCCCCCCC-----C----CCCcccCcCCCCCeEEEEEEeCCCCcc
Q 009392 55 TLYAREH-DTVLVKVVNHVKYNVTI--HWHGVRQLRTGWAD-----G----PAYITQCPIQSGHSYVYNFTITGQRGT 120 (535)
Q Consensus 55 ~i~~~~G-d~v~v~v~N~l~~~t~i--H~HG~~~~~~~~~D-----G----vp~~tq~~i~PG~~~~Y~~~~~~~~Gt 120 (535)
.|++++| .++.|+|+|.-+++.-+ |+|=......-..| | .|.-|...+.||++.+.+.-. -.|.
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~--~gG~ 87 (102)
T PRK13203 12 EIELNAGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVP--LAGA 87 (102)
T ss_pred CEEeCCCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEE--ccCc
Confidence 4888888 89999999999887554 77754443322122 1 333345667889888887743 4454
No 142
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=31.22 E-value=2.2e+02 Score=27.08 Aligned_cols=17 Identities=6% Similarity=0.296 Sum_probs=11.3
Q ss_pred cEEEEecCCEEEEEEEE
Q 009392 54 PTLYAREHDTVLVKVVN 70 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N 70 (535)
|..|+.+|+.-.||+..
T Consensus 77 Pl~rl~p~~~q~lRI~~ 93 (227)
T PRK15299 77 PLFRLNGGQKNVLRIIR 93 (227)
T ss_pred CeEEECCCCccEEEEEE
Confidence 66777777666666654
No 143
>PRK04517 hypothetical protein; Provisional
Probab=31.12 E-value=1.3e+02 Score=28.53 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=28.5
Q ss_pred ChhHHHHHHHHHHHhcccccceeEEEEEEEEEEeeeccCCceeEEEECCCCC---C------cEEEEecCC-EEEEEEE
Q 009392 1 MDSWVRLLLLVACLFPALVECRVRHYKFNVVMKNSTKLCSSKPIVTVNRKFP---G------PTLYAREHD-TVLVKVV 69 (535)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~p---g------P~i~~~~Gd-~v~v~v~ 69 (535)
||.+-.++++.+|+.++++.|. .+|++. ....++.+||+-+ | -.|.+..|+ .|.||+.
T Consensus 1 MK~~~~~~~~~~l~~s~~a~A~---vtL~~p--------~~i~lL~vnG~k~~~s~~l~~~~~~l~L~~G~nQIvfry~ 68 (216)
T PRK04517 1 MKPIKPLTCLLALCFSGSASAD---VTMEVP--------DDVDLLVANGSKPKLSGGFFASTKTLELPDGENQIVFRYS 68 (216)
T ss_pred CCchHHHHHHHHHHhhhhhhhe---EEEeCC--------CceEEEEECCEecccccccccCCceeEeCCCceEEEEEEe
Confidence 6766555555555544444331 122222 2345566777643 1 357777774 3444443
No 144
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.68 E-value=3.2e+02 Score=25.43 Aligned_cols=75 Identities=12% Similarity=-0.015 Sum_probs=49.3
Q ss_pred EEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChh-hhh-c
Q 009392 55 TLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHIL-WLR-A 132 (535)
Q Consensus 55 ~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~-~~~-~ 132 (535)
.+.+..|..|+++++-.. . + |+..++.- ++.+. .-||..-+..|.+ +++|+|.-.|..- +.. +
T Consensus 117 ~l~lp~g~~v~~~ltS~D-V---i--Hsf~vp~l-------~~k~d-~~PG~~~~~~~~~-~~~G~y~g~C~e~CG~~H~ 181 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD-V---I--HSFSVPDL-------NLKMD-AIPGRINHLFFCP-DRHGVFVGYCSELCGVGHS 181 (194)
T ss_pred eEEEeCCCEEEeeeecCc-c---c--cceecccc-------Cceee-cCCCceEEEEEEc-CCCEEEEEEeehhhCcCcc
Confidence 478888888888887652 2 2 44444332 11112 3478888888887 8999998887642 322 6
Q ss_pred ccEEEEEEeCCC
Q 009392 133 TVHGAIVILPKR 144 (535)
Q Consensus 133 Gl~G~iiV~~~~ 144 (535)
.|.+-+.|.+++
T Consensus 182 ~M~~~v~v~~~~ 193 (194)
T MTH00047 182 YMPIVIEVVDVD 193 (194)
T ss_pred cCcEEEEEEcCC
Confidence 788888877654
No 145
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=29.96 E-value=96 Score=26.74 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=15.5
Q ss_pred CCCCCeE----EEEEEeCCCCcceeEe
Q 009392 102 IQSGHSY----VYNFTITGQRGTLLWH 124 (535)
Q Consensus 102 i~PG~~~----~Y~~~~~~~~Gt~wYH 124 (535)
+..|.+. .|+|.. ...+..|=|
T Consensus 86 l~~GD~V~f~GeYe~n~-kggvIHWTH 111 (131)
T PF11948_consen 86 LQKGDQVEFYGEYEWNP-KGGVIHWTH 111 (131)
T ss_pred cCCCCEEEEEEEEEECC-CCCEEEeec
Confidence 5666664 578875 667788877
No 146
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=29.44 E-value=1.7e+02 Score=23.99 Aligned_cols=64 Identities=17% Similarity=0.125 Sum_probs=41.7
Q ss_pred EEEEecC-CEEEEEEEECCCCCceE--EeCCcccCCCCCCC-----C----CCCcccCcCCCCCeEEEEEEeCCCCcc
Q 009392 55 TLYAREH-DTVLVKVVNHVKYNVTI--HWHGVRQLRTGWAD-----G----PAYITQCPIQSGHSYVYNFTITGQRGT 120 (535)
Q Consensus 55 ~i~~~~G-d~v~v~v~N~l~~~t~i--H~HG~~~~~~~~~D-----G----vp~~tq~~i~PG~~~~Y~~~~~~~~Gt 120 (535)
.|++++| .++.|+|.|.-+++.-+ |+|=......-..| | .|.-|...+.||++.+.+.-. -+|.
T Consensus 12 ~I~lN~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~--~~G~ 87 (101)
T cd00407 12 DIELNAGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVP--IGGK 87 (101)
T ss_pred CeEeCCCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEE--ccCc
Confidence 5888888 78999999999887554 77755543322122 1 333344667888888877743 4444
No 147
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=28.78 E-value=2.8e+02 Score=23.56 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=38.1
Q ss_pred EEECCCCCCcEEEEecCCEEEEEEEECCC---CCceEEeC----CcccC-CCCCCCCCCCcccCcCCCCCeEEEEEEe
Q 009392 45 VTVNRKFPGPTLYAREHDTVLVKVVNHVK---YNVTIHWH----GVRQL-RTGWADGPAYITQCPIQSGHSYVYNFTI 114 (535)
Q Consensus 45 ~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~---~~t~iH~H----G~~~~-~~~~~DGvp~~tq~~i~PG~~~~Y~~~~ 114 (535)
..++|= ++..=.++.|..+.+.+.=... .......| |+..+ +.+..||=-. ..|||.+|+.++|.+.+
T Consensus 12 V~V~~C-~~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~-l~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 12 LEVDGC-SGDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKY-VKCPIKKGQHYDIKYTW 87 (120)
T ss_pred EEeCCC-CCCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCccc-EeCCCcCCcEEEEEEee
Confidence 344543 3445667778777766652222 22233333 44333 2222455212 36999999999999977
No 148
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.55 E-value=2.3e+02 Score=27.11 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=46.0
Q ss_pred cEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChh-hhh-
Q 009392 54 PTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHIL-WLR- 131 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~-~~~- 131 (535)
..+.+-.|..|++.++-.. .| |+..++.- | +. .-.-||..-...|.+ +++|+|+-.|..- +..
T Consensus 140 n~lvlP~~~~v~~~~tS~D----Vi--Hsf~ip~~----~---~k-~da~PG~~~~~~~~~-~~~G~~~g~C~e~CG~~H 204 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED----VL--HSWAVPAL----G---VK-MDAVPGRLNQTAFIA-SRPGVFYGQCSEICGANH 204 (230)
T ss_pred ceEEEecCcEEEEEEEeCc----cc--cceecccc----C---Cc-cccCCCceEEEEEEe-CCceEEEEEChhhccccc
Confidence 3577777777777776553 22 55554432 1 11 223478888888887 8999999888642 222
Q ss_pred cccEEEEEEeCC
Q 009392 132 ATVHGAIVILPK 143 (535)
Q Consensus 132 ~Gl~G~iiV~~~ 143 (535)
+.|.+.+.|.++
T Consensus 205 ~~M~~~v~vv~~ 216 (230)
T MTH00129 205 SFMPIVVEAVPL 216 (230)
T ss_pred cCCcEEEEEECH
Confidence 556566655543
No 149
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=28.29 E-value=2.5e+02 Score=26.79 Aligned_cols=75 Identities=13% Similarity=0.060 Sum_probs=46.4
Q ss_pred cEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecCh-hhhh-
Q 009392 54 PTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHI-LWLR- 131 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~-~~~~- 131 (535)
..+.+-.|..|++.+++.. .| |+..++.- | +. .-.-||..-...|.+ +++|+|+--|.. .|..
T Consensus 140 n~lvlP~~~~v~~~~tS~D----Vi--Hsf~vP~~----~---~k-~daiPG~~~~~~~~~-~~~G~~~g~Cse~CG~~H 204 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD----VI--HSWTVPSL----G---VK-VDAVPGRLNQIGFTI-TRPGVFYGQCSEICGANH 204 (228)
T ss_pred ceEEEecCCEEEEEEEeCC----cc--cccccccc----C---cc-eecCCCceEEEEEEe-CCCEEEEEEChhhcCcCc
Confidence 4677788888888888863 22 55544432 1 11 123468888888887 899999877653 2222
Q ss_pred cccEEEEEEeCC
Q 009392 132 ATVHGAIVILPK 143 (535)
Q Consensus 132 ~Gl~G~iiV~~~ 143 (535)
+-|.+.+.|.++
T Consensus 205 s~M~~~v~vv~~ 216 (228)
T MTH00008 205 SFMPIVLEAVDT 216 (228)
T ss_pred cCceeEEEEECH
Confidence 456556655543
No 150
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=27.67 E-value=33 Score=24.87 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=19.1
Q ss_pred EEEECCCCC-CcEEEEecCCEEEE
Q 009392 44 IVTVNRKFP-GPTLYAREHDTVLV 66 (535)
Q Consensus 44 ~~~~NG~~p-gP~i~~~~Gd~v~v 66 (535)
.+.+||+.- -|..+++.||.|.|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 467899865 68899999999876
No 151
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.61 E-value=3.3e+02 Score=26.00 Aligned_cols=62 Identities=11% Similarity=0.153 Sum_probs=42.2
Q ss_pred eeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCCCCceeEEEeecCC
Q 009392 207 FTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADKTSGKYLVAASPFM 286 (535)
Q Consensus 207 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~g~y~i~~~~~~ 286 (535)
..+.++.|+.+|+++-.+-. .+.|.+.... -.+..-||..-.+.+++++ +|.|...|.-++
T Consensus 140 n~l~lP~~~~v~~~~tS~DV--iHsf~vp~l~----------------~k~davPG~~~~~~~~~~~-~G~y~g~Cse~C 200 (227)
T MTH00154 140 NRLVLPMNTQIRILITAADV--IHSWTVPSLG----------------VKVDAVPGRLNQLNFLINR-PGLFFGQCSEIC 200 (227)
T ss_pred ceEEEecCCEEEEEEEcCch--hhheeccccC----------------CeeecCCCceEEEEEEEcC-ceEEEEEeechh
Confidence 46789999998888765542 3333443322 2233447888888888886 899999998654
Q ss_pred C
Q 009392 287 D 287 (535)
Q Consensus 287 ~ 287 (535)
.
T Consensus 201 G 201 (227)
T MTH00154 201 G 201 (227)
T ss_pred C
Confidence 3
No 152
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=27.60 E-value=1.6e+02 Score=28.15 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=36.4
Q ss_pred ceeEEEeCCCEEEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeC
Q 009392 206 GFTLPVDSGKTYMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSAD 272 (535)
Q Consensus 206 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~ 272 (535)
+|.+++++|+...+|++..+.. -.|...+.-+-++..+-++.....+.++...|+=+.++..
T Consensus 75 PPl~rl~pg~~q~vRii~~~~l-----p~drEs~f~l~v~~IP~~~~~~~~l~ia~r~~iklfyRP~ 136 (230)
T PRK09918 75 PPVARVEPGQSQQVRFILKSGS-----PLNTEHLLRVSFEGVPPKPGGKNKVVMPIRQDLPVLIQPA 136 (230)
T ss_pred CCeEEECCCCceEEEEEECCCC-----CCCeeEEEEEEEEEcCCCCCCCCEEEEEEEeEEEEEEeCC
Confidence 3899999999999999977521 2244444444444444322223345555555555555433
No 153
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=27.11 E-value=35 Score=27.77 Aligned_cols=11 Identities=27% Similarity=0.271 Sum_probs=5.1
Q ss_pred HHhccccccee
Q 009392 13 CLFPALVECRV 23 (535)
Q Consensus 13 ~~~~~~~~~~~ 23 (535)
||.+|.++++.
T Consensus 17 LlisSevaa~~ 27 (95)
T PF07172_consen 17 LLISSEVAARE 27 (95)
T ss_pred HHHHhhhhhHH
Confidence 33555554433
No 154
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=26.85 E-value=2.6e+02 Score=23.74 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=33.7
Q ss_pred cEEEEecCCEEEEEEEECCCC-----CceEEeC--CcccCCCC-CCCCCCCc-ccCcCCCCCeEEEEEEe
Q 009392 54 PTLYAREHDTVLVKVVNHVKY-----NVTIHWH--GVRQLRTG-WADGPAYI-TQCPIQSGHSYVYNFTI 114 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N~l~~-----~t~iH~H--G~~~~~~~-~~DGvp~~-tq~~i~PG~~~~Y~~~~ 114 (535)
..=.+..|+.+.+.+.=...+ .+.+|+. |+..+... ..|+=... ..|||.+|+.++|.+.+
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~ 91 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSL 91 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEee
Confidence 445566777776666522211 2333332 54443221 13442111 45999999999999976
No 155
>PRK15216 putative fimbrial biosynthesis regulatory protein; Provisional
Probab=26.31 E-value=2.7e+02 Score=27.80 Aligned_cols=71 Identities=10% Similarity=0.084 Sum_probs=38.4
Q ss_pred ChhHHHHHHHHHHHhccccc---ceeEEEEEEEEEEeeeccCCceeEE--EECCC-----------CCCcEEEEe-cCCE
Q 009392 1 MDSWVRLLLLVACLFPALVE---CRVRHYKFNVVMKNSTKLCSSKPIV--TVNRK-----------FPGPTLYAR-EHDT 63 (535)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~g~~~~~~--~~NG~-----------~pgP~i~~~-~Gd~ 63 (535)
|+|-++++++++.+...-|+ .-+.+-+++|+.......+.+...+ .||.. -|.-.|.-- .+|.
T Consensus 1 ~~~~~l~~~m~~~~~~~yaac~~~it~~~~~~i~~d~~~l~~~q~~~~~~~f~d~~c~~t~~vt~~~~sd~ivg~~~~d~ 80 (340)
T PRK15216 1 MKRLLFLLMMMQFTQLGYAACNATLTNTKDYTIQSDSLMLGGEESAIITNGFTDANCSNSDVVTKLETSDHIIGMGPNDS 80 (340)
T ss_pred CcchHHHHHHHHHcccchhheeeEEeeccceEEecceEEeccceeeEeeccccccccccCceeeccCccceEEeeCCCCe
Confidence 67777777766666443222 2344445666665555555444433 23332 233344433 7899
Q ss_pred EEEEEEEC
Q 009392 64 VLVKVVNH 71 (535)
Q Consensus 64 v~v~v~N~ 71 (535)
|+++|+=.
T Consensus 81 vklkl~~~ 88 (340)
T PRK15216 81 VKLKLKVE 88 (340)
T ss_pred EEEEEEEE
Confidence 88887643
No 156
>KOG4088 consensus Translocon-associated complex TRAP, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.44 E-value=3.6e+02 Score=23.49 Aligned_cols=33 Identities=12% Similarity=0.005 Sum_probs=17.1
Q ss_pred EEEEeeeccCCceeEEEECCCCCCcEEEEecCCE
Q 009392 30 VVMKNSTKLCSSKPIVTVNRKFPGPTLYAREHDT 63 (535)
Q Consensus 30 ~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~ 63 (535)
|++-.+.-.+...++-.+ ..++|-.|-|..+|.
T Consensus 44 i~EftLqCsn~~~n~~l~-Aev~Gk~~PVs~~~d 76 (167)
T KOG4088|consen 44 ITEFTLQCSNNPKNIQLT-AEVNGKLIPVSISDD 76 (167)
T ss_pred EEEEEEEeCCCCcceEEE-EecCCEEEeEEecCc
Confidence 444444445555555433 235566666666554
No 157
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=25.08 E-value=2.3e+02 Score=23.89 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=17.5
Q ss_pred EEecCCEEEEEEEECCCCCceEE
Q 009392 57 YAREHDTVLVKVVNHVKYNVTIH 79 (535)
Q Consensus 57 ~~~~Gd~v~v~v~N~l~~~t~iH 79 (535)
.+++||+|++++...-+..+.+.
T Consensus 88 ~lk~G~~V~F~~~~~~~~~~i~~ 110 (115)
T PRK09838 88 EIKTGDKVAFNFVQQGNLSLLQD 110 (115)
T ss_pred cCCCCCEEEEEEEEcCCcEEEEE
Confidence 47999999999998866554443
No 158
>PRK11372 lysozyme inhibitor; Provisional
Probab=24.57 E-value=2.1e+02 Score=23.88 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=9.0
Q ss_pred ChhHHHHHHHHHHHhcccc
Q 009392 1 MDSWVRLLLLVACLFPALV 19 (535)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (535)
||+ +++++++++|.+|+.
T Consensus 3 mk~-ll~~~~~~lL~gCs~ 20 (109)
T PRK11372 3 MKK-LLIICLPVLLTGCSA 20 (109)
T ss_pred hHH-HHHHHHHHHHHHhcC
Confidence 444 445555555655533
No 159
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=24.40 E-value=3.4e+02 Score=21.05 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=10.4
Q ss_pred EeCCCEEEEEEEEc
Q 009392 211 VDSGKTYMLRIINA 224 (535)
Q Consensus 211 v~~G~~~rlRliN~ 224 (535)
.+.||+++|++-.-
T Consensus 3 ~~~Ge~v~~~~~~~ 16 (83)
T PF14326_consen 3 YRVGERVRFRVTSN 16 (83)
T ss_pred ccCCCEEEEEEEeC
Confidence 56788888888663
No 160
>PRK13205 ureB urease subunit beta; Reviewed
Probab=24.24 E-value=2e+02 Score=25.36 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=42.3
Q ss_pred EEEEecC-CEEEEEEEECCCCCceE--EeCCcccCCCCCCC-----C----CCCcccCcCCCCCeEEEEEEeCCCCcc
Q 009392 55 TLYAREH-DTVLVKVVNHVKYNVTI--HWHGVRQLRTGWAD-----G----PAYITQCPIQSGHSYVYNFTITGQRGT 120 (535)
Q Consensus 55 ~i~~~~G-d~v~v~v~N~l~~~t~i--H~HG~~~~~~~~~D-----G----vp~~tq~~i~PG~~~~Y~~~~~~~~Gt 120 (535)
.|++++| .++.|+|+|.-++|.-+ |+|=......--.| | .|.-|...+.||++.+.+.-. -.|.
T Consensus 12 ~IelN~GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV~--igG~ 87 (162)
T PRK13205 12 SLTGNVGREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLVA--IGGD 87 (162)
T ss_pred CeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEEE--ccCc
Confidence 4889999 89999999999887554 77644443321122 1 333345667889888888753 4554
No 161
>PRK13198 ureB urease subunit beta; Reviewed
Probab=24.23 E-value=2e+02 Score=25.48 Aligned_cols=64 Identities=20% Similarity=0.147 Sum_probs=42.1
Q ss_pred EEEEecC-CEEEEEEEECCCCCceE--EeCCcccCCCCCCC-----C----CCCcccCcCCCCCeEEEEEEeCCCCcc
Q 009392 55 TLYAREH-DTVLVKVVNHVKYNVTI--HWHGVRQLRTGWAD-----G----PAYITQCPIQSGHSYVYNFTITGQRGT 120 (535)
Q Consensus 55 ~i~~~~G-d~v~v~v~N~l~~~t~i--H~HG~~~~~~~~~D-----G----vp~~tq~~i~PG~~~~Y~~~~~~~~Gt 120 (535)
.|++++| .++.|.|.|.-+++.-+ |+|=......-..| | .|.-|...+.||++.+.+.-. -.|.
T Consensus 40 ~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~--~gG~ 115 (158)
T PRK13198 40 PITFNENKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLIP--FGGK 115 (158)
T ss_pred CeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEEE--ccCc
Confidence 4889999 89999999999887554 77644433321122 1 333345667888888888753 4444
No 162
>PRK13201 ureB urease subunit beta; Reviewed
Probab=23.83 E-value=2.2e+02 Score=24.55 Aligned_cols=65 Identities=12% Similarity=0.095 Sum_probs=42.9
Q ss_pred EEEEecC-CEEEEEEEECCCCCceE--EeCCcccCCCCCCC-----C----CCCcccCcCCCCCeEEEEEEeCCCCcce
Q 009392 55 TLYAREH-DTVLVKVVNHVKYNVTI--HWHGVRQLRTGWAD-----G----PAYITQCPIQSGHSYVYNFTITGQRGTL 121 (535)
Q Consensus 55 ~i~~~~G-d~v~v~v~N~l~~~t~i--H~HG~~~~~~~~~D-----G----vp~~tq~~i~PG~~~~Y~~~~~~~~Gt~ 121 (535)
.|++++| .++.|.|.|.-+++.-+ |+|=......-..| | .|.-|...+.||++.+.+.-. -.|.-
T Consensus 12 ~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~--igG~r 88 (136)
T PRK13201 12 EVEINNHHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLVE--YAGKR 88 (136)
T ss_pred CeEeCCCCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEEE--ccCce
Confidence 4889998 89999999999887554 77644443321122 1 333355667899998888753 45553
No 163
>PRK13204 ureB urease subunit beta; Reviewed
Probab=23.22 E-value=2.1e+02 Score=25.32 Aligned_cols=64 Identities=17% Similarity=0.098 Sum_probs=42.0
Q ss_pred EEEEecC-CEEEEEEEECCCCCceE--EeCCcccCCCCCCC-----C----CCCcccCcCCCCCeEEEEEEeCCCCcc
Q 009392 55 TLYAREH-DTVLVKVVNHVKYNVTI--HWHGVRQLRTGWAD-----G----PAYITQCPIQSGHSYVYNFTITGQRGT 120 (535)
Q Consensus 55 ~i~~~~G-d~v~v~v~N~l~~~t~i--H~HG~~~~~~~~~D-----G----vp~~tq~~i~PG~~~~Y~~~~~~~~Gt 120 (535)
.|++++| .++.|.|.|.-+++.-+ |+|=......-..| | .|.-|...+.||++.+.+.-. -.|.
T Consensus 35 ~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~--~gG~ 110 (159)
T PRK13204 35 PIEINQGRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLVP--FAGK 110 (159)
T ss_pred CeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEEE--ccCc
Confidence 4889999 88999999999887554 77655443322122 1 333344567888888887753 4454
No 164
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=23.14 E-value=63 Score=19.28 Aligned_cols=15 Identities=20% Similarity=0.089 Sum_probs=6.3
Q ss_pred hHHHHHHHHHH-Hhcc
Q 009392 3 SWVRLLLLVAC-LFPA 17 (535)
Q Consensus 3 ~~~~~~~~~~~-~~~~ 17 (535)
|..+.++++++ |.+|
T Consensus 8 Kkil~~l~a~~~LagC 23 (25)
T PF08139_consen 8 KKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 44344444433 4444
No 165
>PRK03757 hypothetical protein; Provisional
Probab=22.51 E-value=1.5e+02 Score=27.49 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=16.5
Q ss_pred ChhHHHHHHHHHHHhcccccceeEEEEEEE
Q 009392 1 MDSWVRLLLLVACLFPALVECRVRHYKFNV 30 (535)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 30 (535)
||+.+.++++++++..+ +.+...+|+++.
T Consensus 1 mk~~~~~~~~~~~~~~~-~~~~a~~y~iD~ 29 (191)
T PRK03757 1 MKKTLLGLALGSLLFSA-GSAVAADYKIDT 29 (191)
T ss_pred CchHHHHHHHHHHHhcc-ccccCcceEECC
Confidence 77766666655555433 334455677665
No 166
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=22.30 E-value=3.9e+02 Score=25.47 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=11.2
Q ss_pred EEeCCCceEEEEEEe
Q 009392 257 IVIAPGQTTNVLLSA 271 (535)
Q Consensus 257 l~l~pGeR~dv~v~~ 271 (535)
..|.|++...+.+..
T Consensus 187 ~~v~P~s~~~~~l~~ 201 (230)
T PRK09918 187 PYILPGESLTVAITN 201 (230)
T ss_pred ceECCCceEEEEccC
Confidence 568888888887653
No 167
>PRK13791 lysozyme inhibitor; Provisional
Probab=22.15 E-value=4.5e+02 Score=22.13 Aligned_cols=11 Identities=27% Similarity=0.250 Sum_probs=5.2
Q ss_pred CCEEEEEEEEC
Q 009392 61 HDTVLVKVVNH 71 (535)
Q Consensus 61 Gd~v~v~v~N~ 71 (535)
|.++.|++.|.
T Consensus 39 ~~~l~V~y~n~ 49 (113)
T PRK13791 39 NQVLEVIYVNT 49 (113)
T ss_pred CCeEEEEEeCC
Confidence 33355555554
No 168
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.12 E-value=2.9e+02 Score=26.53 Aligned_cols=75 Identities=13% Similarity=0.026 Sum_probs=45.8
Q ss_pred cEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChh-hhh-
Q 009392 54 PTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHIL-WLR- 131 (535)
Q Consensus 54 P~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~-~~~- 131 (535)
..+.+-.|..|++.++... .| |+..++.- | +... .-||..-...|.+ +++|+|+--|..- |..
T Consensus 144 n~lvlP~~~~v~~~itS~D----Vi--Hsf~vp~l----g---~k~d-aiPG~~~~~~~~~-~~~G~y~g~Cse~CG~~H 208 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAAD----VL--HSFAVPSL----S---VKID-AVPGRLNQTSFFI-KRPGVFYGQCSEICGANH 208 (234)
T ss_pred eEEEEecCcEEEEEEEeCc----hh--cccccccc----C---ceeE-ccCCceEeEEEEe-CCCEEEEEEChhhcCccc
Confidence 4688889999999999873 23 45444322 1 1112 2367777778887 7999998777531 211
Q ss_pred cccEEEEEEeCC
Q 009392 132 ATVHGAIVILPK 143 (535)
Q Consensus 132 ~Gl~G~iiV~~~ 143 (535)
+-|...+.|.++
T Consensus 209 s~M~i~v~vv~~ 220 (234)
T MTH00051 209 SFMPIVIEGVSL 220 (234)
T ss_pred ccCeeEEEEECH
Confidence 445555554443
No 169
>PRK07440 hypothetical protein; Provisional
Probab=22.03 E-value=78 Score=23.99 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=21.2
Q ss_pred eeEEEECCCCCC----cEEEEecCCEEEEE
Q 009392 42 KPIVTVNRKFPG----PTLYAREHDTVLVK 67 (535)
Q Consensus 42 ~~~~~~NG~~pg----P~i~~~~Gd~v~v~ 67 (535)
.-+..+||++-- +...+++||+|+|-
T Consensus 35 ~vav~~N~~iv~r~~w~~~~L~~gD~IEIv 64 (70)
T PRK07440 35 LVAVEYNGEILHRQFWEQTQVQPGDRLEIV 64 (70)
T ss_pred eEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 346788998865 78999999999874
No 170
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=21.97 E-value=1.4e+02 Score=26.33 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=15.0
Q ss_pred cccCcCCCCCeEEEEEEe
Q 009392 97 ITQCPIQSGHSYVYNFTI 114 (535)
Q Consensus 97 ~tq~~i~PG~~~~Y~~~~ 114 (535)
..+..+.||++.++.++.
T Consensus 85 ~~e~~l~PG~~~~~~~~~ 102 (146)
T TIGR03352 85 QDEIILLPGEKRKITITL 102 (146)
T ss_pred cceEEECCCCeeEeeeec
Confidence 445678999999999987
No 171
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=21.87 E-value=2.8e+02 Score=29.42 Aligned_cols=50 Identities=18% Similarity=0.337 Sum_probs=32.6
Q ss_pred EEEEEEEEcCCCc-eEEEEEcCceeEEEEeCCcccceeEeceEEeCCCceEEEEEEeCC
Q 009392 216 TYMLRIINAALNE-ELFFKIAGHKLTVVEVDATYVKPFKTDNIVIAPGQTTNVLLSADK 273 (535)
Q Consensus 216 ~~rlRliN~~~~~-~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~ 273 (535)
.|+++|.|.+... .+.++++|.+ |..++- ..+.+.+.|||..++.|....
T Consensus 349 ~Y~~~i~Nk~~~~~~~~l~v~g~~-------~~~~~~-~~~~i~v~~g~~~~~~v~v~~ 399 (434)
T TIGR02745 349 TYTLKILNKTEQPHEYYLSVLGLP-------GIKIEG-PGAPIHVKAGEKVKLPVFLRT 399 (434)
T ss_pred EEEEEEEECCCCCEEEEEEEecCC-------CcEEEc-CCceEEECCCCEEEEEEEEEe
Confidence 6899999998654 5666666643 221110 112799999999877666543
No 172
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=21.76 E-value=3.1e+02 Score=26.19 Aligned_cols=73 Identities=7% Similarity=0.023 Sum_probs=41.4
Q ss_pred EEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcccCcCCCCCeEEEEEEeCCCCcceeEecChh-hhh-c
Q 009392 55 TLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYITQCPIQSGHSYVYNFTITGQRGTLLWHAHIL-WLR-A 132 (535)
Q Consensus 55 ~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~-~~~-~ 132 (535)
.+.+..|..|++.++-.. .| |+..++.- | +... .-||..-+..+.+ +++|.|+.-|..- +.. +
T Consensus 141 ~lvlP~~~~v~~~~tS~D----Vi--Hsf~ip~l----g---~k~d-aiPG~~~~~~~~~-~~~G~~~g~Cse~CG~~H~ 205 (227)
T MTH00098 141 RVVLPMEMPIRMLISSED----VL--HSWAVPSL----G---LKTD-AIPGRLNQTTLMS-TRPGLYYGQCSEICGSNHS 205 (227)
T ss_pred eEEecCCCEEEEEEEECc----cc--cccccccc----c---ccee-cCCCceEEEEEec-CCcEEEEEECccccCcCcC
Confidence 456666666666666542 22 55554322 1 2222 3378888888887 8999998877531 221 4
Q ss_pred ccEEEEEEeC
Q 009392 133 TVHGAIVILP 142 (535)
Q Consensus 133 Gl~G~iiV~~ 142 (535)
-|...+.|.+
T Consensus 206 ~M~~~v~v~~ 215 (227)
T MTH00098 206 FMPIVLELVP 215 (227)
T ss_pred CceEEEEEeC
Confidence 4545554443
No 173
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=21.73 E-value=5.5e+02 Score=22.45 Aligned_cols=85 Identities=19% Similarity=0.239 Sum_probs=44.6
Q ss_pred eeEEEEEEEEEEeeeccCCc---eeEEEECCCCCCcEEEEecCCEEEEEEEECCCCCceEEeCCcccCCCCCCCCCCCcc
Q 009392 22 RVRHYKFNVVMKNSTKLCSS---KPIVTVNRKFPGPTLYAREHDTVLVKVVNHVKYNVTIHWHGVRQLRTGWADGPAYIT 98 (535)
Q Consensus 22 ~~~~~~l~~~~~~~~~~g~~---~~~~~~NG~~pgP~i~~~~Gd~v~v~v~N~l~~~t~iH~HG~~~~~~~~~DGvp~~t 98 (535)
...+|...+++.++.|+-.. --.+.+||.. |-+| ..|.-| |+|.=. -+|.|--...- - .-+
T Consensus 32 ~~d~~~VkV~~Vni~PnP~a~Ge~aTf~i~~nt-g~tI--s~Gk~V-IeV~y~-----gi~ihsethDL---C----det 95 (153)
T KOG4680|consen 32 INDEYEVKVKEVNISPNPPARGENATFSISGNT-GETI--SEGKYV-IEVSYG-----GIRIHSETHDL---C----DET 95 (153)
T ss_pred hcccceEEEEEEecCCCCCCCCCccEEEEeccc-ccEe--eCCeEE-EEEEEe-----eEEEeeccccc---c----ccc
Confidence 44566888999988887522 2346777764 4443 244433 554422 33433322110 1 123
Q ss_pred cCcCCCCCeEEEEEEe---CCCCccee
Q 009392 99 QCPIQSGHSYVYNFTI---TGQRGTLL 122 (535)
Q Consensus 99 q~~i~PG~~~~Y~~~~---~~~~Gt~w 122 (535)
.|||.||.-.--.-+. ..++|+|-
T Consensus 96 sCPVepG~f~~~hsq~LPg~tPPG~Y~ 122 (153)
T KOG4680|consen 96 SCPVEPGDFLVAHSQVLPGYTPPGSYV 122 (153)
T ss_pred cCCcCcCceeeeeeEeccCcCCCceEE
Confidence 5999999754333222 23567753
No 174
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=21.64 E-value=1.4e+02 Score=28.54 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=12.1
Q ss_pred cEEEEecCCEEEEE
Q 009392 54 PTLYAREHDTVLVK 67 (535)
Q Consensus 54 P~i~~~~Gd~v~v~ 67 (535)
++|.|+-||.|.|.
T Consensus 43 ~vI~v~igD~ldIi 56 (233)
T KOG3858|consen 43 YVIYVQIGDYLDII 56 (233)
T ss_pred ceEEeccCCEEEEE
Confidence 89999999998764
No 175
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=21.21 E-value=4.1e+02 Score=21.87 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=34.8
Q ss_pred eCCCE---EEEEEEEcCCCceEEEEEcCceeEEEEeCCcccceeEe--------ceEEeCCCceEEEEEEeCCCC--cee
Q 009392 212 DSGKT---YMLRIINAALNEELFFKIAGHKLTVVEVDATYVKPFKT--------DNIVIAPGQTTNVLLSADKTS--GKY 278 (535)
Q Consensus 212 ~~G~~---~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~--------d~l~l~pGeR~dv~v~~~~~~--g~y 278 (535)
+.|++ +.+++.|.|... + .+..-.|.++..||...++... -.-.|.||+..+..+.++-+. ..|
T Consensus 32 ~~g~~fv~v~v~v~N~~~~~-~--~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp~~~~~~ 108 (123)
T PF11611_consen 32 KEGNKFVVVDVTVKNNGDEP-L--DFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVPKDDKPY 108 (123)
T ss_dssp ---SEEEEEEEEEEE-SSS--E--EEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEESTT-GG-
T ss_pred CCCCEEEEEEEEEEECCCCc-E--EecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEECCCCccE
Confidence 44444 368999987655 3 3444589999999888765432 246899999888766655322 236
Q ss_pred EEEee
Q 009392 279 LVAAS 283 (535)
Q Consensus 279 ~i~~~ 283 (535)
.|...
T Consensus 109 ~l~~~ 113 (123)
T PF11611_consen 109 TLEYS 113 (123)
T ss_dssp EEEE-
T ss_pred EEEEe
Confidence 66653
No 176
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.06 E-value=3.7e+02 Score=25.30 Aligned_cols=10 Identities=0% Similarity=0.042 Sum_probs=5.5
Q ss_pred CCEEEEEEEE
Q 009392 61 HDTVLVKVVN 70 (535)
Q Consensus 61 Gd~v~v~v~N 70 (535)
|+..+|+..+
T Consensus 65 ~~w~~Vr~~~ 74 (206)
T PRK10884 65 TNYAQIRDSK 74 (206)
T ss_pred CCEEEEEeCC
Confidence 4666665433
No 177
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=20.88 E-value=91 Score=22.99 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=20.1
Q ss_pred eeEEEECCCCCC----cEEEEecCCEEEEE
Q 009392 42 KPIVTVNRKFPG----PTLYAREHDTVLVK 67 (535)
Q Consensus 42 ~~~~~~NG~~pg----P~i~~~~Gd~v~v~ 67 (535)
+-...+||++-. +...+++||+|+|-
T Consensus 31 ~vav~vNg~iv~r~~~~~~~l~~gD~vei~ 60 (66)
T PRK05659 31 RVAVEVNGEIVPRSQHASTALREGDVVEIV 60 (66)
T ss_pred eEEEEECCeEeCHHHcCcccCCCCCEEEEE
Confidence 335678997654 78899999999874
No 178
>PLN03148 Blue copper-like protein; Provisional
Probab=20.78 E-value=4.8e+02 Score=23.66 Aligned_cols=32 Identities=6% Similarity=-0.004 Sum_probs=24.3
Q ss_pred EEEeCCCCcceeEecChhhh-hcccEEEEEEeCCC
Q 009392 111 NFTITGQRGTLLWHAHILWL-RATVHGAIVILPKR 144 (535)
Q Consensus 111 ~~~~~~~~Gt~wYH~H~~~~-~~Gl~G~iiV~~~~ 144 (535)
.+++ +++|+|||-|-. +. ..||-=.|.|.+..
T Consensus 89 ~v~L-~~~G~~YFIcg~-ghC~~GmKl~I~V~~~~ 121 (167)
T PLN03148 89 FIPL-NKAKRYYFICGN-GQCFNGMKVTILVHPLP 121 (167)
T ss_pred EEEe-cCCccEEEEcCC-CccccCCEEEEEEcCCC
Confidence 5777 789999999973 32 28998889897643
No 179
>PF06775 Seipin: Putative adipose-regulatory protein (Seipin); InterPro: IPR009617 Seipin is a protein of approximately 400 residues in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in humans, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V [].
Probab=20.76 E-value=98 Score=28.86 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=30.4
Q ss_pred eEEeCCCceEEEEEEeCCC-------CceeEEEeecCCCCCcccCCCceEEEEEEcC
Q 009392 256 NIVIAPGQTTNVLLSADKT-------SGKYLVAASPFMDAPIAVDNVTATATLHYSG 305 (535)
Q Consensus 256 ~l~l~pGeR~dv~v~~~~~-------~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~ 305 (535)
.-.+.+||.|||.|+..-+ -|.|++..+...............++|+|..
T Consensus 50 ~~~l~~~q~Ydv~v~L~lP~S~~N~~lG~Fmv~l~l~s~~~~~l~~s~Rp~~l~y~S 106 (199)
T PF06775_consen 50 ARLLPPGQPYDVSVELELPESPYNRDLGMFMVSLELLSANGKVLASSSRPAMLPYRS 106 (199)
T ss_pred ccccCCCceEEEEEEEEeCCCCCcCCCCeEEEEEEEEcCCCcEEEEEecceecccCC
Confidence 4568899999998876531 2789988876443321111223345666653
No 180
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=20.69 E-value=75 Score=25.96 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=13.4
Q ss_pred ChhHHHHHHHHHHHhccc
Q 009392 1 MDSWVRLLLLVACLFPAL 18 (535)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (535)
|||.+++..++++|.+|+
T Consensus 1 mKk~ll~~~lallLtgCa 18 (97)
T PF06291_consen 1 MKKLLLAAALALLLTGCA 18 (97)
T ss_pred CcHHHHHHHHHHHHcccc
Confidence 888888887777776663
No 181
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=20.67 E-value=1.8e+02 Score=29.98 Aligned_cols=16 Identities=6% Similarity=0.173 Sum_probs=14.0
Q ss_pred EEEecCCEEEEEEEEC
Q 009392 56 LYAREHDTVLVKVVNH 71 (535)
Q Consensus 56 i~~~~Gd~v~v~v~N~ 71 (535)
.++.+||.+.|++...
T Consensus 70 ~~ig~GDvL~ItVwe~ 85 (355)
T PRK15175 70 TSLAKGDVLHITILSS 85 (355)
T ss_pred ceECCCCEEEEEEEec
Confidence 7899999999999844
No 182
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=20.42 E-value=83 Score=23.24 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=19.2
Q ss_pred EEEECCCCCCcE----EEEecCCEEEEE
Q 009392 44 IVTVNRKFPGPT----LYAREHDTVLVK 67 (535)
Q Consensus 44 ~~~~NG~~pgP~----i~~~~Gd~v~v~ 67 (535)
+..+||++-.+. ..++.||+|.|-
T Consensus 32 ~V~vNg~~v~~~~~~~~~L~~gD~V~ii 59 (65)
T cd00565 32 AVALNGEIVPRSEWASTPLQDGDRIEIV 59 (65)
T ss_pred EEEECCEEcCHHHcCceecCCCCEEEEE
Confidence 567999986555 899999998873
Done!