Query 009393
Match_columns 535
No_of_seqs 204 out of 1726
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 12:34:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1292 Xanthine/uracil transp 100.0 9.9E-88 2.1E-92 697.4 32.9 499 29-535 1-508 (510)
2 COG2233 UraA Xanthine/uracil p 100.0 1.7E-78 3.6E-83 637.5 34.9 410 28-493 4-436 (451)
3 PRK11412 putative uracil/xanth 100.0 9.7E-73 2.1E-77 601.0 38.0 402 40-493 8-430 (433)
4 PRK10720 uracil transporter; P 100.0 1.3E-67 2.8E-72 564.5 37.7 390 28-493 2-408 (428)
5 TIGR03616 RutG pyrimidine util 100.0 2.3E-67 4.9E-72 562.3 38.7 404 26-493 16-428 (429)
6 TIGR00801 ncs2 uracil-xanthine 100.0 2.8E-65 6.1E-70 545.5 36.8 392 36-489 1-415 (415)
7 TIGR03173 pbuX xanthine permea 100.0 1.2E-64 2.7E-69 539.8 35.3 388 46-491 1-406 (406)
8 PF00860 Xan_ur_permease: Perm 100.0 1.2E-61 2.6E-66 514.0 23.5 371 40-444 1-386 (389)
9 COG2252 Xanthine/uracil/vitami 100.0 7.2E-38 1.6E-42 327.8 30.5 384 25-491 4-412 (436)
10 COG0659 SUL1 Sulfate permease 99.9 1.1E-23 2.3E-28 231.5 31.7 320 39-416 21-370 (554)
11 TIGR00843 benE benzoate transp 99.9 6.8E-21 1.5E-25 199.6 31.0 316 41-412 22-348 (395)
12 PRK11660 putative transporter; 99.9 3.8E-20 8.3E-25 205.6 29.8 323 38-404 28-388 (568)
13 TIGR00815 sulP high affinity s 99.9 7.3E-20 1.6E-24 203.2 31.8 319 39-404 14-368 (563)
14 PF03594 BenE: Benzoate membra 99.8 1.8E-16 3.9E-21 163.9 30.1 317 41-410 6-330 (378)
15 COG3135 BenE Uncharacterized p 99.7 5.5E-15 1.2E-19 149.8 27.9 303 40-401 20-335 (402)
16 PF00916 Sulfate_transp: Sulfa 99.6 5.7E-15 1.2E-19 149.9 11.6 242 154-419 1-272 (280)
17 KOG0236 Sulfate/bicarbonate/ox 99.5 3.1E-12 6.7E-17 144.2 26.0 328 56-418 91-452 (665)
18 TIGR00834 ae anion exchange pr 98.4 0.00033 7.1E-09 81.1 30.2 316 79-420 403-799 (900)
19 KOG1172 Na+-independent Cl/HCO 98.2 0.00067 1.5E-08 77.1 27.8 343 48-419 364-774 (876)
20 PF11840 DUF3360: Protein of u 97.8 0.0055 1.2E-07 63.7 22.9 314 67-421 86-417 (492)
21 PF00955 HCO3_cotransp: HCO3- 96.3 0.0026 5.6E-08 70.0 3.0 185 220-421 277-481 (510)
22 TIGR00843 benE benzoate transp 85.4 15 0.00033 39.5 13.3 140 65-240 247-393 (395)
23 COG0659 SUL1 Sulfate permease 84.7 6.7 0.00015 44.1 10.8 121 290-422 24-155 (554)
24 TIGR00815 sulP high affinity s 83.1 14 0.0003 41.6 12.6 116 291-417 18-149 (563)
25 PF03594 BenE: Benzoate membra 75.1 85 0.0018 33.6 14.4 163 39-239 205-376 (378)
26 PRK11660 putative transporter; 69.1 31 0.00066 39.0 10.3 114 290-415 32-153 (568)
27 KOG4085 Uncharacterized conser 52.3 24 0.00053 32.3 4.5 124 363-510 29-162 (175)
28 PF13792 Sulfate_tra_GLY: Sulf 50.4 15 0.00032 30.7 2.7 62 38-110 15-76 (84)
29 PRK11412 putative uracil/xanth 46.3 1.1E+02 0.0023 33.6 9.2 75 79-175 277-351 (433)
30 TIGR03173 pbuX xanthine permea 41.0 1.6E+02 0.0035 31.6 9.6 75 79-175 255-329 (406)
31 PLN00028 nitrate transmembrane 39.4 4.6E+02 0.01 28.4 13.1 37 66-102 64-104 (476)
32 PF05977 MFS_3: Transmembrane 38.4 6.1E+02 0.013 28.4 14.6 130 35-176 216-345 (524)
33 TIGR00801 ncs2 uracil-xanthine 27.9 2.1E+02 0.0047 30.8 8.0 76 79-176 271-346 (415)
34 TIGR00822 EII-Sor PTS system, 27.4 1.7E+02 0.0036 29.9 6.5 40 383-423 163-202 (265)
35 PRK10489 enterobactin exporter 25.3 6.9E+02 0.015 26.1 11.3 59 37-96 224-282 (417)
36 PRK10720 uracil transporter; P 25.1 3.4E+02 0.0074 29.5 8.9 76 79-176 262-337 (428)
37 PF00860 Xan_ur_permease: Perm 22.1 5E+02 0.011 27.6 9.4 81 79-181 269-350 (389)
38 COG4129 Predicted membrane pro 21.5 9.7E+02 0.021 25.2 11.8 78 80-178 14-91 (332)
39 COG4413 Utp Urea transporter [ 21.0 1.6E+02 0.0034 30.0 4.7 90 394-532 45-134 (319)
40 PF13142 DUF3960: Domain of un 20.0 55 0.0012 26.9 1.1 25 484-508 23-47 (87)
No 1
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=100.00 E-value=9.9e-88 Score=697.41 Aligned_cols=499 Identities=61% Similarity=1.116 Sum_probs=472.2
Q ss_pred cccccCCCCChHHHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHH-HHHHHHHHHHHHHHHHHHHHhcCCcceeEccc
Q 009393 29 IAYCITSPPPWPEAILLGFQHYLVMLGTTVLIPTHLVPQMGGGNEEK-AKMIQTLLFVAGLNTLFQTFFGTRLPAVIGGS 107 (535)
Q Consensus 29 ~~~~~~~r~p~~~~i~~GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~-~~li~atll~sGi~Tllq~~~G~rlPiv~Gps 107 (535)
+.|+++|.|||...+++|+||++.|++.++++|.+++.+++.+++|. +.+||++++++||.|++|++||.|||+++|||
T Consensus 1 l~y~i~d~P~w~~~i~lgfQhyl~~lg~~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~S 80 (510)
T KOG1292|consen 1 LHYCINDNPPWPEIILLGFQHYLVCLGTTVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPS 80 (510)
T ss_pred CccCCCCCCCchHHHHhccchHHHHhhhhhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccc
Confidence 36999999999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcccCCCCCChh----hhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhCcccHHHHHHHHHhHh
Q 009393 108 YTYVPTTISIILAGRYSNIVDPQE----KFERIMRGTQGALIVASTLQIVLGFSGLWRNVARLLSPLAAVPLVALSGFGL 183 (535)
Q Consensus 108 fa~v~~~~~i~~~~g~~~~~~~~~----~~~~~~~~~~ga~lvaGvi~illg~~gl~~~L~~~~Pp~V~G~~i~lIGl~l 183 (535)
|+|+++..++.....+.|...+++ +|.+.+++++|++++++.+++++|++|+.+++.|++.|+.+..++.++|+++
T Consensus 81 fafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l 160 (510)
T KOG1292|consen 81 FAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGL 160 (510)
T ss_pred eehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhh
Confidence 999999999988777777654444 7889999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCcchhhhhHHHHHHHHHHHHHh--hhcccc--ccccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccc
Q 009393 184 YEFGFPGVAKCVEIGLPQIIFLIIFSQY--IPHLVR--GERHVFDRFAVIFSVAIVWVYAHLLTVGGAYKNTGPKTQLSC 259 (535)
Q Consensus 184 ~~~~~~~~~~~~~v~l~~l~l~i~l~~~--~~~v~~--~~~~~~~~~aiLigivvG~~~a~~lg~~~~~~~~~~~~~~~~ 259 (535)
+..+.+.++.||.++++.+++.+++++| .++..+ .+++.++++++++++.+.|++|+++...+.|+.++..++.++
T Consensus 161 ~~~~~~~~~~~weI~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~ 240 (510)
T KOG1292|consen 161 FQDGFPKLGKHWEISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSC 240 (510)
T ss_pred HHhhhhhhhhheeecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcc
Confidence 9999999999999999999999999999 533332 235688999999999999999999999999999888889999
Q ss_pred ccCcCCccCCCCcccccccccccCCccCHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCccchhhhhhHHHH
Q 009393 260 RTDRAGIIGAAPWIRVPYPFQWGAPSFDAGESFAMMAASFVALVESTGAFIAVSRYASATPLPPSILSRGIGWQGVGILI 339 (535)
Q Consensus 260 ~~d~~~~v~~ap~~~lP~~~~~g~p~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~l~adGl~til 339 (535)
|+|.+..++++||+.+|+|++||.|.||.+..+.|+...++.++||+|++.++++.+.+++++++.+||++..||+++++
T Consensus 241 RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL 320 (510)
T KOG1292|consen 241 RTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLL 320 (510)
T ss_pred cccHhhhhccCCceeecCCCccCCCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHH
Confidence 99988888999999999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred hhhcCCCCCccccccchhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccchhc
Q 009393 340 SGMFGTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQF 419 (535)
Q Consensus 340 aglfG~~p~tt~s~en~g~i~~Tgv~Sr~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvliv~fg~i~~~Gi~~l~~ 419 (535)
+|+||+...+|.++||+|+++.||++||++++++|.|+++++++.||+|++++||.|++||++++.|+++...|+++++.
T Consensus 321 ~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~~~~mv~avgLSnLQf 400 (510)
T KOG1292|consen 321 AGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCILFGMVGAVGLSNLQF 400 (510)
T ss_pred HHhhCCCccceeeccceeeEeeeeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhhhee
Confidence 99999998888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceEeehhhHHhhcchhHHhhhhhhccCCCCcccccccccccccccccchhHHHHHHHHHHHhhcCCCCchhhh
Q 009393 420 CNLNSFRTKFILGFSFFMGLSIPQYFNEYTAVNGYGPVHTGARWFNDMINVPFSSEPFVAGLLAYVLDVTLHKKDNATRK 499 (535)
Q Consensus 420 v~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g~l~ailLn~~~~~~~~~~~~ 499 (535)
+|+++.||.+|+|+|+++|+.+|+||+++ ++|.+|+.+|++++++.++++.+.+|.++|.+||+++|+. +||
T Consensus 401 ~dlns~RNl~IlG~Sif~gLsip~yF~~~-----~~~v~Tg~~~~d~ilnvll~~~m~Vggi~A~~LDnt~~ga---tr~ 472 (510)
T KOG1292|consen 401 VDLNSSRNLFILGFSIFLGLSIPQYFEQY-----PGPVHTGNGWFDDILNVLLSSRMLVGGILAFILDNTLPGA---TRE 472 (510)
T ss_pred eccccccchhhhhHHHHHhccHHHHHHhC-----CCccccCcHHHHHHHHHHhhHHHHHHHHHhhhccccCCCC---ChH
Confidence 99999999999999999999999999985 5689999999999999999999999999999999999942 689
Q ss_pred cccccccccccccCCCCCcCccccCCcccccCCCCC
Q 009393 500 DRGMHWWDRFRSFKTDTRSEEFYSLPFNLNKFFPSV 535 (535)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 535 (535)
|||+++|++.++.+.|.|.+|+|+||++++|+||+.
T Consensus 473 ~RG~~~w~~~~~~~~d~~~~e~Y~lP~~~n~~f~~~ 508 (510)
T KOG1292|consen 473 QRGLRWWDKFETFNGDVRNEEFYSLPFNLNRFFPRI 508 (510)
T ss_pred hcCCcchhccccccCCccccccccCcHHHHhhcccC
Confidence 999999999999999999999999999999999974
No 2
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.7e-78 Score=637.45 Aligned_cols=410 Identities=27% Similarity=0.475 Sum_probs=381.4
Q ss_pred CcccccCCCCChHHHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH----hcCCccee
Q 009393 28 SIAYCITSPPPWPEAILLGFQHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTF----FGTRLPAV 103 (535)
Q Consensus 28 ~~~~~~~~r~p~~~~i~~GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~----~G~rlPiv 103 (535)
+.....|||+|++|.+++|+||+++|+++.+++|++++.+.++++||+++++|+++|+||++|++|.+ +|.|+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~lglQH~lamfg~~V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~ 83 (451)
T COG2233 4 LIYVLVDERLPLGKLLLLGLQHLLAMFGATVLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSY 83 (451)
T ss_pred cccCcccccCChHHHHHHHHHHHHHHHhcchHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCee
Confidence 44556788889999999999999999999999999999999999999999999999999999999997 46699999
Q ss_pred EccccchHHHHHHHHHhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHhhCcccHHHHHHHHHhH
Q 009393 104 IGGSYTYVPTTISIILAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSGLWR-NVARLLSPLAAVPLVALSGFG 182 (535)
Q Consensus 104 ~Gpsfa~v~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~gl~~-~L~~~~Pp~V~G~~i~lIGl~ 182 (535)
+|+||+|+.+++.+..+++ .+.+.++|+++++|+++++++.. ++ |++|+|||+|+|.++++||++
T Consensus 84 lG~sFafi~p~i~~~~~~g------------~~~~~~~G~ii~ag~~~~li~~~--~~~~l~rlfPPvVtG~Vi~~IGls 149 (451)
T COG2233 84 LGSSFAFVAPMIAIGGTTG------------DGIAALLGGIIAAGLVYFLISPI--VKIRLARLFPPVVTGPVVLVIGLS 149 (451)
T ss_pred EechHHHHHHHHHHHhccC------------CchHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCCceEEeEeeeehhh
Confidence 9999999999988876543 35899999999999999999875 56 999999999999999999999
Q ss_pred hhhhhcCCcc--------------hhhhhHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHhhcCCC
Q 009393 183 LYEFGFPGVA--------------KCVEIGLPQIIFLIIFSQYIPHLVRGERHVFDRFAVIFSVAIVWVYAHLLTVGGAY 248 (535)
Q Consensus 183 l~~~~~~~~~--------------~~~~v~l~~l~l~i~l~~~~~~v~~~~~~~~~~~aiLigivvG~~~a~~lg~~~~~ 248 (535)
|.++++++++ .+..+++.+++++++++++.|+ ++|+.++|+|+++||++++++|.
T Consensus 150 L~~vai~~~~G~~~~~~~~~~~~~~~l~la~~tl~~il~~~~f~~g-------~~~~i~ILiGlv~G~~la~~~G~---- 218 (451)
T COG2233 150 LAPVAINMAGGGPGAAGNPDFGSLENLGLALVTLLIILLINRFGKG-------FLRRIPILIGLVVGYLLALFMGM---- 218 (451)
T ss_pred hHHHHHHHhhCCCCCCCCcccCchhHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHhCC----
Confidence 9999887653 1467899999999999888765 58899999999999999999983
Q ss_pred CCCCCCCccccccCcCCccCCCCcccccccccccCCccCHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCcc
Q 009393 249 KNTGPKTQLSCRTDRAGIIGAAPWIRVPYPFQWGAPSFDAGESFAMMAASFVALVESTGAFIAVSRYASATPLPPSILSR 328 (535)
Q Consensus 249 ~~~~~~~~~~~~~d~~~~v~~ap~~~lP~~~~~g~p~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r 328 (535)
+|+++ +.++|||++|.+++|+. +||+.+++++++++++.++|++|++.|+++.++++.+++++++|
T Consensus 219 ------------vdf~~-v~~a~w~~~P~~~~fg~-~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~r 284 (451)
T COG2233 219 ------------VDFSG-VAEAPWFALPTPFYFGM-AFDWGAILTMLPVAIVTIVEHTGDITATGEITGRDLDGKPRLRR 284 (451)
T ss_pred ------------cCccc-cccCceeeCCcccCCCe-eecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccCccccc
Confidence 57876 88999999999999998 99999999999999999999999999999999987766799999
Q ss_pred chhhhhhHHHHhhhcCCCCCccccccchhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHH
Q 009393 329 GIGWQGVGILISGMFGTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALYCLFFAY 408 (535)
Q Consensus 329 ~l~adGl~tilaglfG~~p~tt~s~en~g~i~~Tgv~Sr~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvliv~fg~ 408 (535)
++++||++++++|+||++|+|||+ ||+|+++.||++||+++.++++++++++++||+++++++||.||+||+.+++||+
T Consensus 285 g~~aDGlat~iag~fg~~p~Ttfa-qNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~sIP~pVlGGa~ivmFG~ 363 (451)
T COG2233 285 GLLADGLATLIAGLFGGFPNTTFA-QNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQSIPSPVLGGAMLVLFGM 363 (451)
T ss_pred ceeeccHHHHHHHhcCCCCCCchh-hceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHhCChhhhhHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchhcccCCCCc-ceEeehhhHHhhcch---hHHhhhhhhccCCCCcccccccccccccccccchhHHHHHHHH
Q 009393 409 VGAGGLSFLQFCNLNSFR-TKFILGFSFFMGLSI---PQYFNEYTAVNGYGPVHTGARWFNDMINVPFSSEPFVAGLLAY 484 (535)
Q Consensus 409 i~~~Gi~~l~~v~~~~~r-n~~ivg~sl~~Gl~~---p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g~l~ai 484 (535)
+..+|+|++.+.|+|++| |.+|+++++.+|++. |+++++ +|++++.+++||+++|+++||
T Consensus 364 Ia~sGir~l~~~~~~~~~~Nl~IvAvsl~~Gig~~~~p~~~~~----------------~p~~~~~l~~sGia~g~i~AI 427 (451)
T COG2233 364 IAASGIRILIRNKVDRSRRNLLIVAVSLGLGIGVGAVPEVFLQ----------------LPAWLRPLLSSGIALGTLTAI 427 (451)
T ss_pred HHHHHHHHHHhcccccCccceeeehHHHHhCcchhcCchhhhh----------------CcHHHHHHHhccHHHHHHHHH
Confidence 999999999999998756 999999999999994 888877 799999999999999999999
Q ss_pred HHHhhcCCC
Q 009393 485 VLDVTLHKK 493 (535)
Q Consensus 485 lLn~~~~~~ 493 (535)
+||+++|+.
T Consensus 428 vLNlll~~~ 436 (451)
T COG2233 428 VLNLLLPGE 436 (451)
T ss_pred HHHHhcccc
Confidence 999999975
No 3
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=100.00 E-value=9.7e-73 Score=600.98 Aligned_cols=402 Identities=20% Similarity=0.331 Sum_probs=354.0
Q ss_pred HHHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEccccchHHHHHHHHH
Q 009393 40 PEAILLGFQHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVPTTISIIL 119 (535)
Q Consensus 40 ~~~i~~GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~ 119 (535)
++++++|+||+++|+.+++++|+++++++|+|++|+.+++|++++++||+|++|+++|+|||++|||||+|+++++++..
T Consensus 8 ~~~~~lglQhvl~m~~~~i~vPliva~a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~ 87 (433)
T PRK11412 8 RESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITL 87 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999888863
Q ss_pred hcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhCcccHHHHHHHHHhHhhhhhcCCcc-------
Q 009393 120 AGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSGLWRNVARLLSPLAAVPLVALSGFGLYEFGFPGVA------- 192 (535)
Q Consensus 120 ~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~gl~~~L~~~~Pp~V~G~~i~lIGl~l~~~~~~~~~------- 192 (535)
.....+. + ...-++...|+++++|+++++++++++++|++|+|||+|+|.++++||+++.+.+++++.
T Consensus 88 ~~~~~g~--~---~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~~ 162 (433)
T PRK11412 88 GEASRGT--P---INDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGIA 162 (433)
T ss_pred cccccCc--c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccCc
Confidence 2100000 0 012233445579999999999999999999999999999999999999999999877431
Q ss_pred --------hhhhhHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHH-HHhhcCCCCCCCCCCccccccCc
Q 009393 193 --------KCVEIGLPQIIFLIIFSQYIPHLVRGERHVFDRFAVIFSVAIVWVYAH-LLTVGGAYKNTGPKTQLSCRTDR 263 (535)
Q Consensus 193 --------~~~~v~l~~l~l~i~l~~~~~~v~~~~~~~~~~~aiLigivvG~~~a~-~lg~~~~~~~~~~~~~~~~~~d~ 263 (535)
.++.+++.++++++.++++.|+ ++|++++|+|+++||+++. .++. |+
T Consensus 163 ~~~~~~~~~~~~~a~~~l~~il~~~~~~~g-------~~~~~svLiGiv~G~v~a~~~~g~-----------------d~ 218 (433)
T PRK11412 163 DPNGKIQLPPFGLSVAVMCLVLAMIIFLPQ-------RIARYSLLVGTIVGWILWAFCFPS-----------------SH 218 (433)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHhCC-----------------Cc
Confidence 1234667777777777666654 5889999999999999864 4431 44
Q ss_pred CCccCCCCcccccccccccCCc-cCHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCccchhhhhhHHHHhhh
Q 009393 264 AGIIGAAPWIRVPYPFQWGAPS-FDAGESFAMMAASFVALVESTGAFIAVSRYASATPLPPSILSRGIGWQGVGILISGM 342 (535)
Q Consensus 264 ~~~v~~ap~~~lP~~~~~g~p~-f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~l~adGl~tilagl 342 (535)
+. +.+++|. +++||.|. ||+.+++++++++++.+.|++||+.++++..+++..++++++|++++||++|+++|+
T Consensus 219 ~~-v~~a~w~----~~pfG~P~~F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~lagl 293 (433)
T PRK11412 219 SL-SGELHWQ----WFPLGSGGALEPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVP 293 (433)
T ss_pred ch-hccCCce----eecCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHh
Confidence 43 5678884 34588895 999999999999999999999999999999887655578999999999999999999
Q ss_pred cCCCCCccccccchhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccchhcccC
Q 009393 343 FGTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNL 422 (535)
Q Consensus 343 fG~~p~tt~s~en~g~i~~Tgv~Sr~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvliv~fg~i~~~Gi~~l~~v~~ 422 (535)
||+.|+|+|+ ||+|+++.||++||+++.++|+++++++|+||+++++++||.||+||+++++|+++..+|+|+++++|+
T Consensus 294 fg~~p~tt~s-qNvGvi~~TgV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~~Fg~I~~~Gi~~l~~~~~ 372 (433)
T PRK11412 294 LAVIPFSPFV-SSIGLLTQTGDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLVSYLPLLGSALVFSQQITF 372 (433)
T ss_pred cCCCCCCchh-hhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEeehhhHHhhcch---h-HHhhhhhhccCCCCcccccccccccccccccchhHHHHHHHHHHHhhcCCC
Q 009393 423 NSFRTKFILGFSFFMGLSI---P-QYFNEYTAVNGYGPVHTGARWFNDMINVPFSSEPFVAGLLAYVLDVTLHKK 493 (535)
Q Consensus 423 ~~~rn~~ivg~sl~~Gl~~---p-~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g~l~ailLn~~~~~~ 493 (535)
| +||.+|+|+++.+|++. | +++++ +|+++|.+++||+++|+++|++||+++|++
T Consensus 373 ~-~rn~~ivg~sl~~Glg~~~~p~~~~~~----------------~P~~~~~~l~sgi~~g~l~AilLn~~~~~~ 430 (433)
T PRK11412 373 T-ARNIYRLALPLFVGIFLMALPPVYLQD----------------LPLTLRPLLSNGLLVGILLAVLMENLIPWE 430 (433)
T ss_pred C-cccchhhHHHHHHHhhHHhCCHHHHHH----------------ChHHHHHHHcCcHHHHHHHHHHHHhhcCcc
Confidence 7 79999999999999996 6 57776 799999999999999999999999999864
No 4
>PRK10720 uracil transporter; Provisional
Probab=100.00 E-value=1.3e-67 Score=564.49 Aligned_cols=390 Identities=22% Similarity=0.366 Sum_probs=346.1
Q ss_pred CcccccCCCCChHHHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHh-cCCcceeEcc
Q 009393 28 SIAYCITSPPPWPEAILLGFQHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTFF-GTRLPAVIGG 106 (535)
Q Consensus 28 ~~~~~~~~r~p~~~~i~~GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~~-G~rlPiv~Gp 106 (535)
+..|++|||||+++.+++|+||+++|+.+++++|+++ |+|+++ +++++|++|++|++. |.|+|+++||
T Consensus 2 ~~~~~~~~~~p~~~~~~lglQhvl~m~~~~i~~Pli~----gl~~~~-------~l~~sGi~TliQ~~~~g~rlP~~~G~ 70 (428)
T PRK10720 2 RRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPILF----HINPAT-------VLLFNGIGTLLYLFICKGKIPAYLGS 70 (428)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCHHH-------HHHHHHHHHHHHHHhccCccceEEeC
Confidence 5689999999999999999999999999999999985 788753 789999999999986 4699999999
Q ss_pred ccchHHHHHHHHHhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhh--hh-HHHHHHhhCcccHHHHHHHHHhHh
Q 009393 107 SYTYVPTTISIILAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFS--GL-WRNVARLLSPLAAVPLVALSGFGL 183 (535)
Q Consensus 107 sfa~v~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~--gl-~~~L~~~~Pp~V~G~~i~lIGl~l 183 (535)
||+|+++++.+.. .+|++++|+++++|+++++++++ ++ ++|++|+|||.++|.++++||+++
T Consensus 71 sfa~i~~~~~~~~---------------~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L 135 (428)
T PRK10720 71 SFAFISPVLLLLP---------------LGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLEL 135 (428)
T ss_pred cHHHHHHHHHHHH---------------ccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHh
Confidence 9999998776642 36999999999999999999997 22 679999999999999999999999
Q ss_pred hhhhcCCcc-----------hhhhhHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHhhcCCCCCCC
Q 009393 184 YEFGFPGVA-----------KCVEIGLPQIIFLIIFSQYIPHLVRGERHVFDRFAVIFSVAIVWVYAHLLTVGGAYKNTG 252 (535)
Q Consensus 184 ~~~~~~~~~-----------~~~~v~l~~l~l~i~l~~~~~~v~~~~~~~~~~~aiLigivvG~~~a~~lg~~~~~~~~~ 252 (535)
.+.++++.+ .++.+++++++++++++++.|+ ++|+.++|+|+++||++++.+|.
T Consensus 136 ~~~~~~~~g~~~~~~~~~~~~~~~lalv~l~iil~~~~~~kg-------~~~~~~iLigIvvG~ila~~lG~-------- 200 (428)
T PRK10720 136 AGVAAGMAGLLPAEGQTPDSKTIIISMVTLAVTVLGSVLFRG-------FLAIIPILIGVLVGYALSFAMGM-------- 200 (428)
T ss_pred HHHHHhhccccCCCCcccchHHHHHHHHHHHHHHHHHHHhcc-------HHHHhHHHHHHHHHHHHHHHhcC--------
Confidence 998876542 1456788888888777666655 46789999999999999999874
Q ss_pred CCCccccccCcCCccCCCCcccccccccccCCccCHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCccchhh
Q 009393 253 PKTQLSCRTDRAGIIGAAPWIRVPYPFQWGAPSFDAGESFAMMAASFVALVESTGAFIAVSRYASATPLPPSILSRGIGW 332 (535)
Q Consensus 253 ~~~~~~~~~d~~~~v~~ap~~~lP~~~~~g~p~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~l~a 332 (535)
.|++. +.+++|+++|. |+.|+||+..+..+++.+++.++|++|++.++++..+++..+++++||++++
T Consensus 201 --------~d~~~-v~~a~~~~lP~---~~~P~fd~~~il~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~a 268 (428)
T PRK10720 201 --------VDTTP-IIEAHWFALPT---FYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFA 268 (428)
T ss_pred --------CCHHH-hhcCccccCCC---CCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhh
Confidence 24443 56788999984 5678999999999999999999999999999999887654456889999999
Q ss_pred hhhHHHHhhhcCCCCCccccccchhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 009393 333 QGVGILISGMFGTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALYCLFFAYVGAG 412 (535)
Q Consensus 333 dGl~tilaglfG~~p~tt~s~en~g~i~~Tgv~Sr~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvliv~fg~i~~~ 412 (535)
||++|+++|+||++|.|+|+ ||+|+++.||++||+++.++++++++++|+||++++++.||.||+||+.+++|+++..+
T Consensus 269 dGlatii~glfG~~p~tty~-en~g~ia~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i~~fg~i~~~ 347 (428)
T PRK10720 269 NGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSLLLYGVIGAS 347 (428)
T ss_pred hhHHHHHHHhcCCCCccccc-cccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hccch--hcccCCCCcceEeehhhHHhhcchhHHhhhhhhccCCCCcccccccccccccccccchhHHHHHHHHHHHhhc
Q 009393 413 GLSFL--QFCNLNSFRTKFILGFSFFMGLSIPQYFNEYTAVNGYGPVHTGARWFNDMINVPFSSEPFVAGLLAYVLDVTL 490 (535)
Q Consensus 413 Gi~~l--~~v~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g~l~ailLn~~~ 490 (535)
|+|++ ++.|++++||.+|+|+++.+|++.... + ++.++.+|+..|+++|++||+++
T Consensus 348 Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~~--------------------~--~~~~~~~gi~~g~~~ai~Lnlll 405 (428)
T PRK10720 348 GIRVLIESKVDYNKAQNLILTSVILIIGVSGAKV--------------------N--IGAAELKGMALATIVGIGLSLIF 405 (428)
T ss_pred HHHHHHHccCCCCcccchhHHHHHHHHHHHHHHH--------------------H--HHHHhcCcHHHHHHHHHHHHHHh
Confidence 99999 789998888999999999999985321 1 45778899999999999999999
Q ss_pred CCC
Q 009393 491 HKK 493 (535)
Q Consensus 491 ~~~ 493 (535)
|.+
T Consensus 406 ~~~ 408 (428)
T PRK10720 406 KLI 408 (428)
T ss_pred ccc
Confidence 965
No 5
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=100.00 E-value=2.3e-67 Score=562.34 Aligned_cols=404 Identities=21% Similarity=0.328 Sum_probs=349.1
Q ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHH-HhcCCcceeE
Q 009393 26 LPSIAYCITSPPPWPEAILLGFQHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQT-FFGTRLPAVI 104 (535)
Q Consensus 26 ~~~~~~~~~~r~p~~~~i~~GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~-~~G~rlPiv~ 104 (535)
.++..|++|||||+++++++|+||+++|+++++++|+++ |+|++ ++++++|++|++|+ .+|+|+|+++
T Consensus 16 ~~~~~~~~d~~~p~~~~~~~GlQh~lam~~~~v~~Plil----gl~~~-------~tl~~sGi~TllQ~~~~G~rlP~v~ 84 (429)
T TIGR03616 16 LEHHPVAPDERLPAAQTIVMGLQHAVAMFGATVLMPLLM----GFDPN-------LTILMSGIGTLLFFLITGGRVPSYL 84 (429)
T ss_pred CcCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCHh-------HHHHHHHHHHHHHHHHhCCCceeEE
Confidence 455789999999999999999999999999999999996 58875 57999999999997 4799999999
Q ss_pred ccccchHHHHHHHHHhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHhhCcccHHHHHHHHHh
Q 009393 105 GGSYTYVPTTISIILAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSGLW---RNVARLLSPLAAVPLVALSGF 181 (535)
Q Consensus 105 Gpsfa~v~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~gl~---~~L~~~~Pp~V~G~~i~lIGl 181 (535)
|+||+|+.+++.+..... .. + ..++++++|+++++|++++++++++.+ ++++|+|||+|+|.++++||+
T Consensus 85 G~sf~f~~~~~~~~~~~~---~~-~----~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGl 156 (429)
T TIGR03616 85 GSSAAFVGAVIAATGYNG---QG-T----NPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGL 156 (429)
T ss_pred cCcHHHHHHHHHHHhhcc---cC-C----cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999998766532110 00 0 136899999999999999999998655 899999999999999999999
Q ss_pred HhhhhhcCCcch---hhhhHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc
Q 009393 182 GLYEFGFPGVAK---CVEIGLPQIIFLIIFSQYIPHLVRGERHVFDRFAVIFSVAIVWVYAHLLTVGGAYKNTGPKTQLS 258 (535)
Q Consensus 182 ~l~~~~~~~~~~---~~~v~l~~l~l~i~l~~~~~~v~~~~~~~~~~~aiLigivvG~~~a~~lg~~~~~~~~~~~~~~~ 258 (535)
++.+.++++.+. ....++++++.++++.++.|+ ++|+.++|+|+++||++|+.++.. +.. .
T Consensus 157 sL~~vg~~~~~~~~~~~~~al~tl~~i~l~~l~~~~-------~l~~~avLiGivvG~iva~~l~~~--~g~-------~ 220 (429)
T TIGR03616 157 NLAPIAVKSVSASGFDSWMAVLTILCIGAVAVFTRG-------MLQRLLILVGLIAAYLAYFILTNV--FGL-------G 220 (429)
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhh--cCC-------C
Confidence 999999886542 123567777777777767665 478999999999999999886421 110 0
Q ss_pred cccCcCCccCCCCcccccccccccCCccCHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCccchhhhhhHHH
Q 009393 259 CRTDRAGIIGAAPWIRVPYPFQWGAPSFDAGESFAMMAASFVALVESTGAFIAVSRYASATPLPPSILSRGIGWQGVGIL 338 (535)
Q Consensus 259 ~~~d~~~~v~~ap~~~lP~~~~~g~p~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~l~adGl~ti 338 (535)
+++|++. +.++||+++| +|+.|+||+..++.+++++++.++|++||+.++++..+++. +++++|++++||++|+
T Consensus 221 ~~vd~s~-v~~a~~~~lP---~~~~p~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~~~~~--~~~i~r~l~adGl~t~ 294 (429)
T TIGR03616 221 KAVDFSP-ISQAAWFGLP---NFHTPVFNANAMLLIAPVALILVAENLGHFKAVAGMTGRNL--DPYMGRAFVGDGLATM 294 (429)
T ss_pred ccccCcc-cccCccccCC---cCCCceEcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCC--CchhccchhhhhHHHH
Confidence 1367764 6789999999 57788999999999999999999999999999999987543 3469999999999999
Q ss_pred HhhhcCCCCCccccccchhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccch-
Q 009393 339 ISGMFGTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFL- 417 (535)
Q Consensus 339 laglfG~~p~tt~s~en~g~i~~Tgv~Sr~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvliv~fg~i~~~Gi~~l- 417 (535)
++|++|+.|.|+|+ ||+|+++.||++||+++..+++++++++|+||++++++.||.||+||+++++|+++..+|+|++
T Consensus 295 ~agl~g~~p~tt~~-en~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i~~fg~i~~~Gi~~l~ 373 (429)
T TIGR03616 295 LSGSVGGTGVTTYA-ENIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASIVVFGLIAVAGARIWV 373 (429)
T ss_pred HHHhcCCCCCccee-eeeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -hcccCCCCcceEeehhhHHhhcchhHHhhhhhhccCCCCcccccccccccccccccchhHHHHHHHHHHHhhcCCC
Q 009393 418 -QFCNLNSFRTKFILGFSFFMGLSIPQYFNEYTAVNGYGPVHTGARWFNDMINVPFSSEPFVAGLLAYVLDVTLHKK 493 (535)
Q Consensus 418 -~~v~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g~l~ailLn~~~~~~ 493 (535)
+++|+|++||.+|+|+++.+|++.- +.+++.+++||+.+|+++|++||+++|++
T Consensus 374 ~~~~d~~~~rn~~ivg~sl~~g~g~~----------------------~~~~~~~~~s~i~~~~~~ai~Ln~~l~~~ 428 (429)
T TIGR03616 374 QNKVDLTQNGNLIMVAVTLVLGAGDF----------------------ALTIGAFTLGGIGTATFGAIVLNALLNRD 428 (429)
T ss_pred hccCCcCccceeehhHHHHHHHhHHH----------------------HHHHHHHhhCcHHHHHHHHHHHHHhcCCC
Confidence 6889987889999999999999742 23456789999999999999999999964
No 6
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=100.00 E-value=2.8e-65 Score=545.51 Aligned_cols=392 Identities=27% Similarity=0.480 Sum_probs=353.7
Q ss_pred CCChHHHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCC---cceeEccccchHH
Q 009393 36 PPPWPEAILLGFQHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTFFGTR---LPAVIGGSYTYVP 112 (535)
Q Consensus 36 r~p~~~~i~~GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~~G~r---lPiv~Gpsfa~v~ 112 (535)
|||+++.+++|+||+++|+++++++|++++.+. +|++|+++++|++++++|++|++|+++.++ +|.++|++|+|++
T Consensus 1 ~~~~~~~~~lglQh~l~~~~~~i~~p~iv~~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~ 79 (415)
T TIGR00801 1 RPPFLQTLVLGLQHLLAMFGGTVLVPLLVGLAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVS 79 (415)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHH
Confidence 689999999999999999999999999999998 999999999999999999999999986443 6999999999999
Q ss_pred HHHHHHHhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhh--h-hHHHHHHhhCcccHHHHHHHHHhHhhhhhcC
Q 009393 113 TTISIILAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFS--G-LWRNVARLLSPLAAVPLVALSGFGLYEFGFP 189 (535)
Q Consensus 113 ~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~--g-l~~~L~~~~Pp~V~G~~i~lIGl~l~~~~~~ 189 (535)
+.+.+..+ ++|++++|+++++|+++++++.+ + .++|++|+|||.|+|.++++||+++.+.+++
T Consensus 80 ~~~~~~~~--------------~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~ 145 (415)
T TIGR00801 80 PMIAIGSG--------------LGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVK 145 (415)
T ss_pred HHHHHHhc--------------cCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHH
Confidence 87665432 46999999999999999999985 3 4678999999999999999999999999887
Q ss_pred Ccc--------------hhhhhHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 009393 190 GVA--------------KCVEIGLPQIIFLIIFSQYIPHLVRGERHVFDRFAVIFSVAIVWVYAHLLTVGGAYKNTGPKT 255 (535)
Q Consensus 190 ~~~--------------~~~~v~l~~l~l~i~l~~~~~~v~~~~~~~~~~~aiLigivvG~~~a~~lg~~~~~~~~~~~~ 255 (535)
+.+ .++.+++.++++++++.++.|+ ++|++++|+|+++||++++.+|.
T Consensus 146 ~~~g~~~~~~~~~~~~~~~~~vg~~~l~~~vl~~~~~~g-------~~~~~aiLigiv~g~i~a~~lg~----------- 207 (415)
T TIGR00801 146 MAAGGEAAMSSATYGSLENLGVAFVVLALIILLNRFGKG-------FLKSISILIGILVGYILALFMGI----------- 207 (415)
T ss_pred HhccCCCcccccccCchhhHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHcCC-----------
Confidence 642 1256788888877777776665 47899999999999999998874
Q ss_pred ccccccCcCCccCCCCcccccccccccCCccCHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCccchhhhhh
Q 009393 256 QLSCRTDRAGIIGAAPWIRVPYPFQWGAPSFDAGESFAMMAASFVALVESTGAFIAVSRYASATPLPPSILSRGIGWQGV 335 (535)
Q Consensus 256 ~~~~~~d~~~~v~~ap~~~lP~~~~~g~p~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~l~adGl 335 (535)
+|+++ +.++||+++|.+++|+ |+||+..+..++++++++++|++|+++++++.+++++++++++||++.+||+
T Consensus 208 -----~~~~~-v~~~~~~~lP~~~~~g-~~f~~~~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl 280 (415)
T TIGR00801 208 -----VDFSP-VIDAPWFSLPTPFTFG-PSFEWPAILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGL 280 (415)
T ss_pred -----ccchh-hccCcccccCCccCCC-ceecHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhH
Confidence 34543 5678999999888887 6999999999999999999999999999999998765447889999999999
Q ss_pred HHHHhhhcCCCCCccccccchhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcc
Q 009393 336 GILISGMFGTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALYCLFFAYVGAGGLS 415 (535)
Q Consensus 336 ~tilaglfG~~p~tt~s~en~g~i~~Tgv~Sr~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvliv~fg~i~~~Gi~ 415 (535)
+|+++|+||++|.|+|+ ||+|+++.||++||++..++++++++++|+||++++++.||.||+||+++++|+++..+|+|
T Consensus 281 ~~i~aglfG~~p~t~~s-en~g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi~ 359 (415)
T TIGR00801 281 ATLLAGLFGGFPNTTFA-QNIGVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGIR 359 (415)
T ss_pred HHHHHHhcCCCCCcchh-hhheeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcccCCCCcceEeehhhHHhhcch---hHHhhhhhhccCCCCcccccccccccccccccchhHHHHHHHHHHHhh
Q 009393 416 FLQFCNLNSFRTKFILGFSFFMGLSI---PQYFNEYTAVNGYGPVHTGARWFNDMINVPFSSEPFVAGLLAYVLDVT 489 (535)
Q Consensus 416 ~l~~v~~~~~rn~~ivg~sl~~Gl~~---p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g~l~ailLn~~ 489 (535)
.+.+.|+|++||.+++++|+.+|+++ |+++++ +| +++||+.+|+++|++||++
T Consensus 360 ~l~~~~~~~~r~~~i~~~s~~~g~~~~~~p~~~~~----------------~p-----~~~~g~~~g~~~ai~Ln~~ 415 (415)
T TIGR00801 360 ILIRNKLDNRRNRNIIAASVGLGLGVTGVPDIFGN----------------FP-----LLLSGIALAGIVAILLNLI 415 (415)
T ss_pred HHHhCccCcccceehHHHHHHHHHHHhccHHHHhh----------------Cc-----hhcccHHHHHHHHHHHhcC
Confidence 99999998789999999999999997 877765 56 7899999999999999974
No 7
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=100.00 E-value=1.2e-64 Score=539.78 Aligned_cols=388 Identities=29% Similarity=0.502 Sum_probs=350.7
Q ss_pred HHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHH----HhcCCcceeEccccchHHHHHHHHHhc
Q 009393 46 GFQHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQT----FFGTRLPAVIGGSYTYVPTTISIILAG 121 (535)
Q Consensus 46 GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~----~~G~rlPiv~Gpsfa~v~~~~~i~~~~ 121 (535)
|+||+++|+.+++++|++++++.|+|++|+..+++++++++|++|++|+ .+|+|+|+++|||++++.++..+..+
T Consensus 1 ~~Qh~l~~~~~~i~~p~i~~~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~- 79 (406)
T TIGR03173 1 GLQHVLAMYAGAVAVPLIVGGALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAG- 79 (406)
T ss_pred CccchHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhh-
Confidence 6899999999999999999998899999999999999999999999997 46899999999999999987665432
Q ss_pred ccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhCcccHHHHHHHHHhHhhhhhcCCcc---------
Q 009393 122 RYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSGLWRNVARLLSPLAAVPLVALSGFGLYEFGFPGVA--------- 192 (535)
Q Consensus 122 g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~gl~~~L~~~~Pp~V~G~~i~lIGl~l~~~~~~~~~--------- 192 (535)
++|++++|+++++|+++++++ ++++|++|+|||+++|.++++||+++.+.++++..
T Consensus 80 -------------~~~~~~~ga~~v~Gii~illg--~~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~~~~~ 144 (406)
T TIGR03173 80 -------------GGLGAIFGAVIVAGLFVILLA--PFFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGAPDFG 144 (406)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCccccc
Confidence 479999999999999999999 46899999999999999999999999988775432
Q ss_pred --hhhhhHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccCcCCccCCC
Q 009393 193 --KCVEIGLPQIIFLIIFSQYIPHLVRGERHVFDRFAVIFSVAIVWVYAHLLTVGGAYKNTGPKTQLSCRTDRAGIIGAA 270 (535)
Q Consensus 193 --~~~~v~l~~l~l~i~l~~~~~~v~~~~~~~~~~~aiLigivvG~~~a~~lg~~~~~~~~~~~~~~~~~~d~~~~v~~a 270 (535)
.++.+++.++++++++.++.|+ ++|.+++|+++++||++++.+|. .|++. +.++
T Consensus 145 ~~~~~~l~l~~l~~~il~~~~~~~-------~~~~~aiLi~ivvg~iva~~~g~----------------~~~~~-i~~~ 200 (406)
T TIGR03173 145 SPQNLGLALLTLVIILLLNRFGKG-------FLRSIAVLLGLVVGTIVAAALGM----------------VDFSG-VAEA 200 (406)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhh-------HHHHhHHHHHHHHHHHHHHHhcC----------------CCchh-hccC
Confidence 1356777887777666655544 47889999999999999998874 24443 5667
Q ss_pred CcccccccccccCCccCHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCccchhhhhhHHHHhhhcCCCCCcc
Q 009393 271 PWIRVPYPFQWGAPSFDAGESFAMMAASFVALVESTGAFIAVSRYASATPLPPSILSRGIGWQGVGILISGMFGTGNGSS 350 (535)
Q Consensus 271 p~~~lP~~~~~g~p~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~l~adGl~tilaglfG~~p~tt 350 (535)
||+.+|.+++|+.|+||+..+..++.+++++++|++|+.+++++..+++ .+++++||++.+||++|+++|+||++|.|+
T Consensus 201 ~~~~~P~~~~~~~P~f~~~~~~~~~~~~lv~~~esig~~~a~~~~~g~~-~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~ 279 (406)
T TIGR03173 201 PWFALPTPFHFGAPTFDLVAILTMIIVYLVSMVETTGDFLALGEITGRP-ITEKDLAGGLRADGLGSALGGLFNTFPYTS 279 (406)
T ss_pred CeeeCCCCCcCCCCeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCchhccchHHhccHHHHHHHHhCCCCCcc
Confidence 9999998888999999999999999999999999999999999988754 356789999999999999999999999999
Q ss_pred ccccchhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccchhcccCCCCcceEe
Q 009393 351 VSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRTKFI 430 (535)
Q Consensus 351 ~s~en~g~i~~Tgv~Sr~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvliv~fg~i~~~Gi~~l~~v~~~~~rn~~i 430 (535)
|+ ||+|+++.||++||++..++++++++++++||++++++.||.+|+|++++++|+++..+|+|.+++.|+||+||.+|
T Consensus 280 ~~-~~~~~~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~~~~~i~~~g~~~l~~~~~~~~rn~~i 358 (406)
T TIGR03173 280 FS-QNVGLVQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLVMFGMVAASGIRILSKVDFDRRRNLLI 358 (406)
T ss_pred hh-hhHHHHHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcceehh
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999988779999
Q ss_pred ehhhHHhhcch---hHHhhhhhhccCCCCcccccccccccccccccchhHHHHHHHHHHHhhcC
Q 009393 431 LGFSFFMGLSI---PQYFNEYTAVNGYGPVHTGARWFNDMINVPFSSEPFVAGLLAYVLDVTLH 491 (535)
Q Consensus 431 vg~sl~~Gl~~---p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g~l~ailLn~~~~ 491 (535)
+|+++.+|++. |+++++ +|++++++++||+++|+++|++||+++|
T Consensus 359 ~g~~~~~g~~~~~~p~~~~~----------------~p~~~~~~~~~~~~~g~~~ai~l~~~~p 406 (406)
T TIGR03173 359 VAVSLGLGLGPTVVPEFFSQ----------------LPAWAQTLFSSGIAVGAISAILLNLLFN 406 (406)
T ss_pred hHHHHHHHHHHHhhHHHHHH----------------ChHHHHHHHhCcHHHHHHHHHHHHhhcC
Confidence 99999999974 888776 7999999999999999999999999986
No 8
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=100.00 E-value=1.2e-61 Score=514.02 Aligned_cols=371 Identities=31% Similarity=0.585 Sum_probs=282.6
Q ss_pred HHHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH-hcCCcceeEccccchHHHHHHHH
Q 009393 40 PEAILLGFQHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTF-FGTRLPAVIGGSYTYVPTTISII 118 (535)
Q Consensus 40 ~~~i~~GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~-~G~rlPiv~Gpsfa~v~~~~~i~ 118 (535)
+||+++|+||+++|+++++++|.+++++.|+ ++++..+++++++++|++|++|++ +|+|+|+++|+|++++.......
T Consensus 1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~-~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~ 79 (389)
T PF00860_consen 1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGL-DADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVI 79 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTS------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHhhcccc-cchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhccc
Confidence 5899999999999999999999999998898 777779999999999999999999 79999999999999998322211
Q ss_pred HhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhCcccHHHHHHHHHhHhhhhhcCCcch-----
Q 009393 119 LAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSGLWRNVARLLSPLAAVPLVALSGFGLYEFGFPGVAK----- 193 (535)
Q Consensus 119 ~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~gl~~~L~~~~Pp~V~G~~i~lIGl~l~~~~~~~~~~----- 193 (535)
++ .+++.++|++++|+++++|++++++++++.++|++|+|||.|+|.++++||+++.+.++++.+.
T Consensus 80 -g~--------~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~ 150 (389)
T PF00860_consen 80 -GM--------AESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNP 150 (389)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---B
T ss_pred -cc--------ccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhccccccccc
Confidence 10 0123478999999999999999999999999999999999999999999999999998865431
Q ss_pred ---------hhhhHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccCcC
Q 009393 194 ---------CVEIGLPQIIFLIIFSQYIPHLVRGERHVFDRFAVIFSVAIVWVYAHLLTVGGAYKNTGPKTQLSCRTDRA 264 (535)
Q Consensus 194 ---------~~~v~l~~l~l~i~l~~~~~~v~~~~~~~~~~~aiLigivvG~~~a~~lg~~~~~~~~~~~~~~~~~~d~~ 264 (535)
+..++..+++..+.++++.+ +++|++++++|+++||++++.+|.. |++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ailigi~~g~i~~~~~g~~----------------~~~ 207 (389)
T PF00860_consen 151 DGLLVGDGKNLGLAVLTLLFILLLSLFLK-------GFLRKGAILIGIIAGWIVAAILGVV----------------DFS 207 (389)
T ss_dssp TT-B---HHHHHHHHHHHHHHHHHHHSSS-------TTTTTHHHHHHHHHHHHHHHHHHHT----------------TSS
T ss_pred cccccccccccccccccchhhhhhhhhhh-------hhcccccchhhhhhhhhhhhccccc----------------ccC
Confidence 22345555555555555543 4578999999999999999999853 444
Q ss_pred CccCCCCcccccccccccCCccCHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCccchhhhhhHHHHhhhcC
Q 009393 265 GIIGAAPWIRVPYPFQWGAPSFDAGESFAMMAASFVALVESTGAFIAVSRYASATPLPPSILSRGIGWQGVGILISGMFG 344 (535)
Q Consensus 265 ~~v~~ap~~~lP~~~~~g~p~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~l~adGl~tilaglfG 344 (535)
+.+.++||+++|++++|++|+|++..++.++.+++++++|++||+.++++..+++++++++++|++.+||++|+++|+||
T Consensus 208 ~~~~~~~~~~~p~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G 287 (389)
T PF00860_consen 208 PSVSSAPWFSLPSPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFG 287 (389)
T ss_dssp H-HHHS-SS--------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhc
Confidence 32567999999999999999999999999999999999999999999999999777668999999999999999999999
Q ss_pred CCCCccccccchhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccchhcccCCC
Q 009393 345 TGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNS 424 (535)
Q Consensus 345 ~~p~tt~s~en~g~i~~Tgv~Sr~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvliv~fg~i~~~Gi~~l~~v~~~~ 424 (535)
++|.|+|+ ||+|+++.||++|||+..++++++++++++||++++++.||.+|++|++++++|+++++|+|++++.|+||
T Consensus 288 ~~~~t~~~-en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~i~~~gi~~i~~~~~~~ 366 (389)
T PF00860_consen 288 TSPTTTYS-ENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGMIMMSGIRNIDWVDLDS 366 (389)
T ss_dssp ---EEE-H-HHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-S
T ss_pred CCCCcccc-ccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhHhheecccCc
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcceEeehhhHHhhcchhHH
Q 009393 425 FRTKFILGFSFFMGLSIPQY 444 (535)
Q Consensus 425 ~rn~~ivg~sl~~Gl~~p~~ 444 (535)
+||.+++++++.+|++++.+
T Consensus 367 ~r~~~iv~~~l~~g~~i~~~ 386 (389)
T PF00860_consen 367 ARNAFIVGLSLPLGLSIAFG 386 (389)
T ss_dssp HHHHHHHHHHHHHHHH----
T ss_pred cccHHHHHHhHHHHHHHhcc
Confidence 99999999999999998653
No 9
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.2e-38 Score=327.80 Aligned_cols=384 Identities=13% Similarity=0.186 Sum_probs=296.3
Q ss_pred CCCCcccccCCCCC-hHHHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCccee
Q 009393 25 QLPSIAYCITSPPP-WPEAILLGFQHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTFFGTRLPAV 103 (535)
Q Consensus 25 ~~~~~~~~~~~r~p-~~~~i~~GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv 103 (535)
+.-|+.|+++||.+ .++|+++|+++|++|.|.+.++|.|+++ .|+|.+ .++.+|++.++++|++|+++ +|+|+.
T Consensus 4 ~~~~~~F~l~~~~t~vrtEiiAGlTTFltM~YIl~VnP~IL~~-ag~~~~---av~~AT~l~a~~gs~~mgl~-An~P~a 78 (436)
T COG2252 4 GDLDRFFKLKEHGTTVRTEVIAGLTTFLTMAYIVFVNPQILGA-AGMPVG---AVFVATCLAAAIGSIAMGLY-ANLPIA 78 (436)
T ss_pred hHHHHHhCccccCchHHHHHHHHHHHHHHHHHhheecHHHHHh-cCCCch---hHHHHHHHHHHHHHHHHHHH-HcCchh
Confidence 45578999999985 9999999999999999999999999998 578854 67789999999999999999 999999
Q ss_pred Ecccc---chHHHHHHHHHhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhCcccHHHHHHHHH
Q 009393 104 IGGSY---TYVPTTISIILAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSGLWRNVARLLSPLAAVPLVALSG 180 (535)
Q Consensus 104 ~Gpsf---a~v~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~gl~~~L~~~~Pp~V~G~~i~lIG 180 (535)
++|.. +|... +++..++ ..||+++++++++|+++++++++|+|+|++|.+|....-.+...||
T Consensus 79 lapgmglnAfFaf--tvv~~~g------------i~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIG 144 (436)
T COG2252 79 LAPGMGLNAFFAF--TVVLGMG------------LSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIG 144 (436)
T ss_pred hcchhhHHHHHHH--HHHHhcC------------CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHH
Confidence 99953 44443 3344444 4799999999999999999999999999999999876555555555
Q ss_pred hHhhhhhcCCcc----------------h-hhhhHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHh
Q 009393 181 FGLYEFGFPGVA----------------K-CVEIGLPQIIFLIIFSQYIPHLVRGERHVFDRFAVIFSVAIVWVYAHLLT 243 (535)
Q Consensus 181 l~l~~~~~~~~~----------------~-~~~v~l~~l~l~i~l~~~~~~v~~~~~~~~~~~aiLigivvG~~~a~~lg 243 (535)
+.+..+++++.+ + ...++++++++++++ ..||+ +.+++++|+..+++++++|
T Consensus 145 lFia~IgL~~~Givv~~~~tlv~LG~~~~p~vll~i~G~~l~~~L--~~~~i---------~Gaili~i~~~t~~g~~~g 213 (436)
T COG2252 145 LFIALIGLKNAGIVVANPATLVALGDFTSPGVLLAILGLLLIIVL--VSRKI---------KGAILIGILVTTILGIILG 213 (436)
T ss_pred HHHHHHHHhhCCeEEecCcceEEeecCCCchHHHHHHHHHHHHHH--HHhhc---------cHhhhHHHHHHHHHHHHhc
Confidence 555555544322 1 356778888888777 56665 7899999999999999998
Q ss_pred hcCCCCCCCCCCccccccCcCCccCCCCcccccccccccCC--ccCHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--
Q 009393 244 VGGAYKNTGPKTQLSCRTDRAGIIGAAPWIRVPYPFQWGAP--SFDAGESFAMMAASFVALVESTGAFIAVSRYASAT-- 319 (535)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~d~~~~v~~ap~~~lP~~~~~g~p--~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~-- 319 (535)
.... +.+.....|... |...+.+.. ...+..+..++.+.+++++|++|++.+++++++..
T Consensus 214 ~~~~---------------~~~~~~~~p~~~-~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~ 277 (436)
T COG2252 214 IDVH---------------FGGLVGAPPSLS-PIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDK 277 (436)
T ss_pred cccc---------------ccccccCCCCcc-chhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCC
Confidence 5310 000011111111 111122221 12245566789999999999999999999999853
Q ss_pred CCCCccCccchhhhhhHHHHhhhcCCCCCccccccchhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHH
Q 009393 320 PLPPSILSRGIGWQGVGILISGMFGTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVA 399 (535)
Q Consensus 320 ~~~~~~~~r~l~adGl~tilaglfG~~p~tt~s~en~g~i~~Tgv~Sr~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlg 399 (535)
+++.+|.+|.+.+|++++++++++|+++.|+|. |+...++..|.+...+++++.+|++.+.+.| +...+|..+.+
T Consensus 278 ~g~~~~~~~al~~D~v~t~~ga~~GtS~~t~yI-ESaaGva~GgrTGltavv~g~lFl~~lf~~P----l~~~vP~~Ata 352 (436)
T COG2252 278 NGKMPRIGKALLADSVATVVGALFGTSTVTAYI-ESAAGVAAGGRTGLTAVVTGLLFLLSLFFSP----LAALVPGYATA 352 (436)
T ss_pred CCCccccchHHHHhHHHHHHHHhcCCcchhhhh-hcccccccccccccHHHHHHHHHHHHHHHHH----HHHhCcHhhhh
Confidence 334579999999999999999999999999999 9999999999999999999999999988777 99999999999
Q ss_pred HHHHHHHHHHHHhhccchhcccCCCCcceEeehhhHHhhcchhHHhhhhhhccCCCCcccccccccccccccccchhHHH
Q 009393 400 ALYCLFFAYVGAGGLSFLQFCNLNSFRTKFILGFSFFMGLSIPQYFNEYTAVNGYGPVHTGARWFNDMINVPFSSEPFVA 479 (535)
Q Consensus 400 gvliv~fg~i~~~Gi~~l~~v~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g 479 (535)
+++++ .|.+|+++ ++++||+|..+. +|.++.... +| +.+-..+|++.|
T Consensus 353 paLi~-vG~lM~~~---v~~id~~d~~ea------------~PaF~tiv~--------------mp--lTySIa~Gia~G 400 (436)
T COG2252 353 PALII-VGALMLSS---VKQIDWSDFTEA------------VPAFLTIVM--------------MP--LTYSIADGIAFG 400 (436)
T ss_pred HHHHH-HHHHHHhh---hccCCchhhhhh------------hHHHHHHHH--------------HH--HHHHHHhhHHHH
Confidence 99988 56666655 457778764332 344433321 22 234467899999
Q ss_pred HHHHHHHHhhcC
Q 009393 480 GLLAYVLDVTLH 491 (535)
Q Consensus 480 ~l~ailLn~~~~ 491 (535)
.+...+++....
T Consensus 401 fi~y~i~k~~~g 412 (436)
T COG2252 401 FISYVILKVFTG 412 (436)
T ss_pred HHHHHHHHHHhh
Confidence 999999988543
No 10
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.1e-23 Score=231.54 Aligned_cols=320 Identities=16% Similarity=0.193 Sum_probs=236.5
Q ss_pred hHHHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEccccchHHHHHHHH
Q 009393 39 WPEAILLGFQHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVPTTISII 118 (535)
Q Consensus 39 ~~~~i~~GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~ 118 (535)
++..+++|+.-....++..+.+.. +.|+|++ +.++++.++.++-+++|.+--.+.||.-++...+..+.
T Consensus 21 l~~Dl~AGltva~valP~ama~a~----~aGv~p~-------~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i 89 (554)
T COG0659 21 LRGDLLAGLTVAAVALPLAMAFAI----AAGVPPE-------AGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVI 89 (554)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH----HcCCCHH-------HHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHH
Confidence 778999999988766543333333 3789984 88899999999999997776679999777666555555
Q ss_pred HhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhCcccHHHHHHHHHhHhhhhhcCCc------c
Q 009393 119 LAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSGLWRNVARLLSPLAAVPLVALSGFGLYEFGFPGV------A 192 (535)
Q Consensus 119 ~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~gl~~~L~~~~Pp~V~G~~i~lIGl~l~~~~~~~~------~ 192 (535)
.+.. .++++.++-+++++|++++++|++|+ +++.+++|+.|+-.++..||+.++..+++.+ .
T Consensus 90 ~~~~-----------~~g~~~~~~~tllaGv~~i~~G~lRL-G~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~~ 157 (554)
T COG0659 90 ASLV-----------ETGLALAFLATLLAGVFQILLGLLRL-GRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASKV 157 (554)
T ss_pred HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 4210 15799999999999999999999998 9999999988887788888887765544211 0
Q ss_pred ----------------h---hhhhHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 009393 193 ----------------K---CVEIGLPQIIFLIIFSQYIPHLVRGERHVFDRFAVIFSVAIVWVYAHLLTVGGAYKNTGP 253 (535)
Q Consensus 193 ----------------~---~~~v~l~~l~l~i~l~~~~~~v~~~~~~~~~~~aiLigivvG~~~a~~lg~~~~~~~~~~ 253 (535)
. ...+++.++.+++.+.++. .|.++.++++++++.++|.++....
T Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~lg~~~l~il~~~~~~~----------~~~P~~liaiv~~t~i~~~~~~~~~------ 221 (554)
T COG0659 158 SGFWAKVSALFTVLLTINLATLLLGLLTLAILLFLPRLT----------PRIPSPLIALVLGTLIVWIFPLDSL------ 221 (554)
T ss_pred cchHHHHHHHHHhcccccHHHHHHHHHHHHHHHHccchh----------hhCCcHHHHHHHHHHHHHHhcCCch------
Confidence 0 1234445555444433222 2578899999999999998865310
Q ss_pred CCccccccCcCCccCCCCcccccccccccCCccCH----hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCccc
Q 009393 254 KTQLSCRTDRAGIIGAAPWIRVPYPFQWGAPSFDA----GESFAMMAASFVALVESTGAFIAVSRYASATPLPPSILSRG 329 (535)
Q Consensus 254 ~~~~~~~~d~~~~v~~ap~~~lP~~~~~g~p~f~~----~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~ 329 (535)
+.+ +..++.|.. +| +|+.|.+++ ..+...+.++++.++||+.+.++.+++.++ +.+.|||
T Consensus 222 ------~~G--~i~~~lp~~-~~---~~~~P~~~~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~----~~d~nrE 285 (554)
T COG0659 222 ------RYG--EIPGSLPSG-LP---HFRLPNVSLSLLLALLPYALALALLGLLESLLTAVSFDGMTGT----KHDSNRE 285 (554)
T ss_pred ------hcc--cCcccCCcC-CC---cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCHH
Confidence 011 011111110 11 344455554 445567889999999999999999988753 5678999
Q ss_pred hhhhhhHHHHhhhcCCCCCccccccchhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHH-HHHH
Q 009393 330 IGWQGVGILISGMFGTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALYCL-FFAY 408 (535)
Q Consensus 330 l~adGl~tilaglfG~~p~tt~s~en~g~i~~Tgv~Sr~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvliv-~fg~ 408 (535)
++++|++|+++|+||++|.|... .+.......|.+||.+.++++++++++-++ ++.++..||.+++++++++ .+++
T Consensus 286 LiaqGiaNi~sglfgg~p~~g~~-srS~~nv~sGarT~lsgi~~a~~lll~l~~--~~~~~~~IP~a~Laavli~v~~~l 362 (554)
T COG0659 286 LIAQGIANIASGLFGGIPATGSI-SRSAINIKSGARTRLSGIIHAALLLLLLLF--LAPLVSYIPLAALAAVLILVGWGL 362 (554)
T ss_pred HHHhhHHHHHHHHhCCccccchh-HHHHHHHHhCCcChHHHHHHHHHHHHHHHH--HHHHHHhCcHHHHHHHHHHHHHHh
Confidence 99999999999999999999999 777888889999999999999887765544 7789999999999999986 5555
Q ss_pred HHHhhccc
Q 009393 409 VGAGGLSF 416 (535)
Q Consensus 409 i~~~Gi~~ 416 (535)
+....++.
T Consensus 363 ~~~~~~~~ 370 (554)
T COG0659 363 LDWSLLKP 370 (554)
T ss_pred ccHHHHHH
Confidence 55555544
No 11
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.89 E-value=6.8e-21 Score=199.65 Aligned_cols=316 Identities=17% Similarity=0.205 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEccccchHHHHHHHHHh
Q 009393 41 EAILLGFQHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVPTTISIILA 120 (535)
Q Consensus 41 ~~i~~GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~~ 120 (535)
..+..|+-.++.-+.+.++.-+=-+++.|++++|++.++++.++.+|++|++|++. +|+|++++.| +.-..++.+. .
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~-~r~Pi~~awS-tPGaAll~~~-~ 98 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIR-FKTPVLTAWS-APGAALLVTG-F 98 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCeeeecC-chHHHHHHHh-c
Confidence 57789999998888776555444445599999999999999999999999999998 7999999999 3333232222 1
Q ss_pred cccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhCcccHHHHHHHHHhHhhhhhcCCcchhhhhHHH
Q 009393 121 GRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSGLWRNVARLLSPLAAVPLVALSGFGLYEFGFPGVAKCVEIGLP 200 (535)
Q Consensus 121 ~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~gl~~~L~~~~Pp~V~G~~i~lIGl~l~~~~~~~~~~~~~v~l~ 200 (535)
.+ .+++++.|+.+++|++.+++|++|.++|++|.+|+.+.+.++..|.+......++...+.+.+++.
T Consensus 99 ~~------------~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~~pll~~~ 166 (395)
T TIGR00843 99 PG------------ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDGLFLICFS 166 (395)
T ss_pred CC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 11 479999999999999999999999999999999999999998777665543333333334444433
Q ss_pred HHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccCcCCccCCCCccccccccc
Q 009393 201 QIIFLIIFSQYIPHLVRGERHVFDRFAVIFSVAIVWVYAHLLTVGGAYKNTGPKTQLSCRTDRAGIIGAAPWIRVPYPFQ 280 (535)
Q Consensus 201 ~l~l~i~l~~~~~~v~~~~~~~~~~~aiLigivvG~~~a~~lg~~~~~~~~~~~~~~~~~~d~~~~v~~ap~~~lP~~~~ 280 (535)
.++..+ ..|| +++++++++++++|+++++..|..+ .++ +. .. +..| .
T Consensus 167 mll~~l----~~~r-------~~Pr~avl~aLlvG~iva~~~G~~~----------------~~~-~~-~~-l~~p---~ 213 (395)
T TIGR00843 167 MLLCWL----ASKA-------FAPRYAMIAALICGIAFSFALGDMN----------------PTD-LD-FK-IALP---Q 213 (395)
T ss_pred HHHHHH----HHHH-------hcchHHHHHHHHHHHHHHHHhcCCC----------------ccc-cc-cc-cccc---e
Confidence 322222 2233 3467999999999999999887421 111 10 00 1223 4
Q ss_pred ccCCccCHhHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCccchhhhhhHHHHhhhcCCCC------Cccccc
Q 009393 281 WGAPSFDAGESFA-MMAASFVALVESTGAFIAVSRYASATPLPPSILSRGIGWQGVGILISGMFGTGN------GSSVSV 353 (535)
Q Consensus 281 ~g~p~f~~~~i~~-~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~l~adGl~tilaglfG~~p------~tt~s~ 353 (535)
|-.|+||+...+. .++.+++.+....-.-.++.+..++++ +.|+.+.++|++|++++.||+.+ +++..
T Consensus 214 ~~~P~fs~~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~----p~~~~~~~tGl~sll~ApfGg~~~nlaaitaAic- 288 (395)
T TIGR00843 214 FIAPDFSFAHSLNLALPLFLVSLAGQFAPGIAALKAAGYNA----PAKPIIAAAGLAALFAAFAGGISIGIAAITAAIC- 288 (395)
T ss_pred eeCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCC----CchHHHHHHHHHHHHHhccCCchhhhhHHhHHHh-
Confidence 5567888766554 356777777555444455666666543 36999999999999999999997 22222
Q ss_pred cchhhhhhccCCc-hhH-HHHHHHHHHHHHHh-hHHHHHHHhCChHHHHHHHH-HHHHHHHHh
Q 009393 354 ENAGLLALTRVGS-RRV-VQISAGFMIFFSIL-GKFGAVFASIPAPIVAALYC-LFFAYVGAG 412 (535)
Q Consensus 354 en~g~i~~Tgv~S-r~~-~~~a~~~li~l~f~-Pk~~al~~~IP~~Vlggvli-v~fg~i~~~ 412 (535)
. |- ..-+..+ |+. .+.+|++.++++++ +.+..+++.+|.+.+..+-= -+++.+..+
T Consensus 289 ~--G~-~ah~d~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~~~ 348 (395)
T TIGR00843 289 M--GK-DAHEDKDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIAGN 348 (395)
T ss_pred c--Cc-ccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 1 11 1112233 333 37888888888888 89999999999988877643 355665433
No 12
>PRK11660 putative transporter; Provisional
Probab=99.87 E-value=3.8e-20 Score=205.61 Aligned_cols=323 Identities=13% Similarity=0.144 Sum_probs=215.3
Q ss_pred ChHHHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEccccchHHHHHHH
Q 009393 38 PWPEAILLGFQHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVPTTISI 117 (535)
Q Consensus 38 p~~~~i~~GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i 117 (535)
.++..+++|++-.+..++-.+.+..+ +|+++. ..++.+.+++++-+++|+.--++.||..+.......+
T Consensus 28 ~l~~D~iAGltv~~~~iPq~mayA~l----ag~pp~-------~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~ 96 (568)
T PRK11660 28 RFTRDLIAGITVGIIAIPLAMALAIA----SGVPPQ-------YGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPV 96 (568)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH----cCCChH-------HHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHH
Confidence 37899999999988777666666543 788884 5788899999999999877778999976544433333
Q ss_pred HHhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhCcccHHHHHHHHHhHhhhhhcCCc------
Q 009393 118 ILAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSGLWRNVARLLSPLAAVPLVALSGFGLYEFGFPGV------ 191 (535)
Q Consensus 118 ~~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~gl~~~L~~~~Pp~V~G~~i~lIGl~l~~~~~~~~------ 191 (535)
..+ .+++.+..+.+++|++++++|++|+ +++.+++|..|+..++..+|+.+...+++..
T Consensus 97 ~~~--------------~~~~~~~~~~~l~Gii~~l~gllrl-G~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~ 161 (568)
T PRK11660 97 SQQ--------------FGLAGLLVATLMSGIILILMGLARL-GRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMA 161 (568)
T ss_pred HHH--------------hhHHHHHHHHHHHHHHHHHHHHHhh-hHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 322 2466777889999999999999997 8999999988888888888876554332111
Q ss_pred --c-------------------hhhhhHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHhhcCCCCC
Q 009393 192 --A-------------------KCVEIGLPQIIFLIIFSQYIPHLVRGERHVFDRFAVIFSVAIVWVYAHLLTVGGAYKN 250 (535)
Q Consensus 192 --~-------------------~~~~v~l~~l~l~i~l~~~~~~v~~~~~~~~~~~aiLigivvG~~~a~~lg~~~~~~~ 250 (535)
. ....+++.++++++++.++.+ |.++.++++++++++++.++..+ ++.
T Consensus 162 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~lll~~~~~~~----------~iP~~li~iiv~t~~~~~~~~~~-~~v 230 (568)
T PRK11660 162 HVPEHYLEKVGALFQALPTINWGDALIGIVTLGVLILWPRLKI----------RLPGHLPALLAGTAVMGVLNLLG-GHV 230 (568)
T ss_pred CCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhhcc----------cCchHHHHHHHHHHHHHHHhccC-CCc
Confidence 0 012345555555444322221 35677999999999988886431 110
Q ss_pred CCCCCcccccc-CcC-C-cc-CCCCccccccc-ccc-cC-CccCHhH----HHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 009393 251 TGPKTQLSCRT-DRA-G-II-GAAPWIRVPYP-FQW-GA-PSFDAGE----SFAMMAASFVALVESTGAFIAVSRYASAT 319 (535)
Q Consensus 251 ~~~~~~~~~~~-d~~-~-~v-~~ap~~~lP~~-~~~-g~-p~f~~~~----i~~~~~~~lv~~~esiG~~~av~~~~~~~ 319 (535)
+.......... |-. . .+ ...|-+.+|.. ..+ +. -.+++.. +...+.++++.++|++.+.++.++..++
T Consensus 231 ~~vg~~~~~~~~~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~- 309 (568)
T PRK11660 231 ATIGSRFHYVLADGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGT- 309 (568)
T ss_pred eeecccccccccccccccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 00000000000 000 0 00 00111222210 000 00 0235443 4456788999999999888888777543
Q ss_pred CCCCccCccchhhhhhHHHHhhhcCCCCCccccccchhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHH
Q 009393 320 PLPPSILSRGIGWQGVGILISGMFGTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVA 399 (535)
Q Consensus 320 ~~~~~~~~r~l~adGl~tilaglfG~~p~tt~s~en~g~i~~Tgv~Sr~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlg 399 (535)
+.+.||++.++|++|+++|+||++|.+++. ....+...+|.++|.+.+++++++++..++ ++.++..||.++++
T Consensus 310 ---~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~-srSa~n~~aGarT~la~iv~a~~~ll~ll~--l~~ll~~iP~~vLa 383 (568)
T PRK11660 310 ---KHSANSELVGQGLGNIVAPFFGGITATAAI-ARSAANVRAGATSPISAVIHALLVLLALLV--LAPLLSYLPLSAMA 383 (568)
T ss_pred ---CCCCcHHHHHHhHHHHHHHHhCcccccchH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHH--HHHHHHhCcHHHHH
Confidence 456899999999999999999999999997 556777788999999988777766443222 44599999999999
Q ss_pred HHHHH
Q 009393 400 ALYCL 404 (535)
Q Consensus 400 gvliv 404 (535)
+++++
T Consensus 384 ~ili~ 388 (568)
T PRK11660 384 ALLLM 388 (568)
T ss_pred HHHHH
Confidence 99987
No 13
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=99.87 E-value=7.3e-20 Score=203.25 Aligned_cols=319 Identities=14% Similarity=0.147 Sum_probs=220.7
Q ss_pred hHHHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEccccchHHHHHHHH
Q 009393 39 WPEAILLGFQHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVPTTISII 118 (535)
Q Consensus 39 ~~~~i~~GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~ 118 (535)
++..+++|++-.+..++..+.+..+ +|+++. ..+.++.+..++-+++|+.--++.||..+.-.....++
T Consensus 14 l~~Di~aGltv~~~~iP~~~ayA~l----aglpp~-------~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v 82 (563)
T TIGR00815 14 FKGDLMAGLTVGILLIPQAMAYAIL----AGLSPI-------YGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVI 82 (563)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH----cCCCch-------hhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHH
Confidence 6789999999887766555555433 689884 66888999999999998877789999765444334444
Q ss_pred HhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhCcccHHHHHHHHHhHhhhhhc------CCc-
Q 009393 119 LAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSGLWRNVARLLSPLAAVPLVALSGFGLYEFGF------PGV- 191 (535)
Q Consensus 119 ~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~gl~~~L~~~~Pp~V~G~~i~lIGl~l~~~~~------~~~- 191 (535)
..++.....+ ....+.+....+++|++++++|++|+ +++.+++|..|+..++..+|+.+...++ +..
T Consensus 83 ~~~~~~~~~~-----~~~~~~a~~l~~l~Gi~~~~~g~lrl-G~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~ 156 (563)
T TIGR00815 83 ARVGLQYLFD-----CDAIRLAFTLTLLAGIFQVILGLLRL-GFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFN 156 (563)
T ss_pred HHhcCCCCcc-----cHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4443211100 13466777889999999999999998 9999999998888888888886663322 210
Q ss_pred ----------------ch----hh---hhHHHHHHHHHHHHHhhhcccccccc--ccchhhHHHHHHHHHHHHHHHhhcC
Q 009393 192 ----------------AK----CV---EIGLPQIIFLIIFSQYIPHLVRGERH--VFDRFAVIFSVAIVWVYAHLLTVGG 246 (535)
Q Consensus 192 ----------------~~----~~---~v~l~~l~l~i~l~~~~~~v~~~~~~--~~~~~aiLigivvG~~~a~~lg~~~ 246 (535)
.+ ++ .+++.++++++.+ |++.++.++ +...+..|+.+++++++++.++...
T Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l~~~----~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~ 232 (563)
T TIGR00815 157 TRTDTLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFLLYT----KKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHKK 232 (563)
T ss_pred CCCChHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHH----HHhhhhccchhcccccHHHHHHHHHHHHHHHHccCC
Confidence 00 22 2233333333222 333211111 1224678999999998877663211
Q ss_pred CCCCCCCCCccccccCcCCccCCCCcccccccccccCCccCHh----HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 009393 247 AYKNTGPKTQLSCRTDRAGIIGAAPWIRVPYPFQWGAPSFDAG----ESFAMMAASFVALVESTGAFIAVSRYASATPLP 322 (535)
Q Consensus 247 ~~~~~~~~~~~~~~~d~~~~v~~ap~~~lP~~~~~g~p~f~~~----~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~ 322 (535)
+. +.. +.+.|- .+| .+..|.+|+. .+...+.++++.++|++...++.+++.++
T Consensus 233 -~~-----------~~~---~g~ip~-g~p---~~~~~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~---- 289 (563)
T TIGR00815 233 -QG-----------VSI---LGHIPS-GLS---FFPPITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGY---- 289 (563)
T ss_pred -CC-----------eEE---EeecCC-CCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----
Confidence 00 111 111111 122 2333455543 34556889999999999999999887543
Q ss_pred CccCccchhhhhhHHHHhhhcCCCCCccccccchhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHH
Q 009393 323 PSILSRGIGWQGVGILISGMFGTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALY 402 (535)
Q Consensus 323 ~~~~~r~l~adGl~tilaglfG~~p~tt~s~en~g~i~~Tgv~Sr~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvl 402 (535)
+.+.||++.++|++|+++|+||++|.+... ....+...+|.++|.+.++++++++++.++ ++.++..+|.+++++++
T Consensus 290 ~~d~n~El~a~G~~N~~~~~fg~~p~~~s~-srs~~~~~~G~~t~~a~i~~~~~~l~~~l~--~~~~l~~iP~~~la~il 366 (563)
T TIGR00815 290 KIDANQELVAQGIANIVGSFFSCYPATGSL-SRTAVNAKAGCRTQLSGVVTAIVVLLVLLV--LTPLFYYIPQAALAAII 366 (563)
T ss_pred CCCCcHHHHHhhHHHHHHHHhCccCCCCcc-hHHHHHHhcCCcchHHHHHHHHHHHHHHHH--HHHHHHhChHHHHHHHH
Confidence 457899999999999999999999999888 667778889999999998888887665544 56799999999999999
Q ss_pred HH
Q 009393 403 CL 404 (535)
Q Consensus 403 iv 404 (535)
++
T Consensus 367 i~ 368 (563)
T TIGR00815 367 IS 368 (563)
T ss_pred HH
Confidence 87
No 14
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.78 E-value=1.8e-16 Score=163.89 Aligned_cols=317 Identities=20% Similarity=0.264 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEccccchHHHHHHHHHh
Q 009393 41 EAILLGFQHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVPTTISIILA 120 (535)
Q Consensus 41 ~~i~~GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~~ 120 (535)
.++..|+-.++.-+.+.++.-+-.+++.|.+++|+..++.+..+.+|+.|+..++. +|.|++.+=|-.......+..
T Consensus 6 s~~~aG~va~lvg~tg~~aiv~qaa~a~g~s~~q~~SWl~al~~~~Gl~~i~lSl~-yR~Pi~~AWStPGaAlL~~~~-- 82 (378)
T PF03594_consen 6 SAVSAGFVAVLVGYTGPVAIVLQAAQAAGASPAQIASWLFALYLGMGLTSILLSLR-YRMPIVTAWSTPGAALLATSL-- 82 (378)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchhhcchHHHHHHHHhc--
Confidence 56778888888877776555444455699999999999999999999999999987 999998776654443322222
Q ss_pred cccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhCcccHHHHHHHHHhHhhhhhcCCcchhhhhHHH
Q 009393 121 GRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSGLWRNVARLLSPLAAVPLVALSGFGLYEFGFPGVAKCVEIGLP 200 (535)
Q Consensus 121 ~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~gl~~~L~~~~Pp~V~G~~i~lIGl~l~~~~~~~~~~~~~v~l~ 200 (535)
.+ ++++++.|+.+++|++.+++|++|+++|+.|.+|+.+...++..+-+...-..++....++.+...
T Consensus 83 ~~------------~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~~~P~l~~~ 150 (378)
T PF03594_consen 83 PG------------YSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQADPLLVGP 150 (378)
T ss_pred cC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 22 479999999999999999999999999999999998887776666554444444444455666555
Q ss_pred HHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccCcCCccCCCCccccccccc
Q 009393 201 QIIFLIIFSQYIPHLVRGERHVFDRFAVIFSVAIVWVYAHLLTVGGAYKNTGPKTQLSCRTDRAGIIGAAPWIRVPYPFQ 280 (535)
Q Consensus 201 ~l~l~i~l~~~~~~v~~~~~~~~~~~aiLigivvG~~~a~~lg~~~~~~~~~~~~~~~~~~d~~~~v~~ap~~~lP~~~~ 280 (535)
.++.-++..++ .++++++.++++|.++++..|.. +.+. . + ..++.| .
T Consensus 151 ml~~~l~~~r~-----------~pr~av~~al~~g~~~a~~~g~~----------------~~~~-~---~-~~~~~p-~ 197 (378)
T PF03594_consen 151 MLAVFLLARRF-----------SPRYAVLAALVAGVAVAALTGQL----------------HPSA-L---Q-LSLAHP-V 197 (378)
T ss_pred HHHHHHHHHHH-----------cchhHHHHHHHHHHHHHHhcCCC----------------Cccc-c---c-ccccee-E
Confidence 55555444333 34679999999999988776532 1111 1 1 122322 5
Q ss_pred ccCCccCHhHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCccchhhhhhHHHHhhhcCCCCCccccccchhhh
Q 009393 281 WGAPSFDAGESFAM-MAASFVALVESTGAFIAVSRYASATPLPPSILSRGIGWQGVGILISGMFGTGNGSSVSVENAGLL 359 (535)
Q Consensus 281 ~g~p~f~~~~i~~~-~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~l~adGl~tilaglfG~~p~tt~s~en~g~i 359 (535)
|-.|+||+..++.+ ++++++.+...-..-.++-|..|. ++..|+-+...|+++++.+.||+.+.+-.. -.+++-
T Consensus 198 ~~~P~Fs~~a~v~lalPL~ivtmasQnlpG~aVL~a~GY----~~p~~~~~~~tGl~s~l~ApfGg~~~nlAa-itaAIc 272 (378)
T PF03594_consen 198 FTTPEFSWSALVSLALPLFIVTMASQNLPGIAVLRAAGY----QPPVNPLITVTGLASLLAAPFGGHAVNLAA-ITAAIC 272 (378)
T ss_pred EECCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHHcCC----CCCchHHHHHHHHHHHHHhhhchhhhHHHH-HHHHHH
Confidence 66789999887765 678888887555555555555543 456899999999999999999998533222 212211
Q ss_pred hh---ccC-CchhH-HHHHHHHHHHHHHh-hHHHHHHHhCChHHHHHHHHH-HHHHHH
Q 009393 360 AL---TRV-GSRRV-VQISAGFMIFFSIL-GKFGAVFASIPAPIVAALYCL-FFAYVG 410 (535)
Q Consensus 360 ~~---Tgv-~Sr~~-~~~a~~~li~l~f~-Pk~~al~~~IP~~Vlggvliv-~fg~i~ 410 (535)
.- -+. ..||. .+.+|++.++++++ +.+..++...|.+.+..+-=. +++.+.
T Consensus 273 ~g~eah~dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~ 330 (378)
T PF03594_consen 273 AGPEAHPDPSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLG 330 (378)
T ss_pred cCCccCCCcccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 11 112 33554 37888888888877 688899999999887765332 445544
No 15
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.72 E-value=5.5e-15 Score=149.82 Aligned_cols=303 Identities=22% Similarity=0.292 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEccccchHHHHHHHHH
Q 009393 40 PEAILLGFQHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVPTTISIIL 119 (535)
Q Consensus 40 ~~~i~~GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~ 119 (535)
..++..|++.++.=+.+.+++-+--+++.|.+++|++.++.+-.+..|+.|+.-++. .|.|++.+=|--.... .+.
T Consensus 20 p~~l~ag~va~~vG~~~s~aii~~aa~a~gas~aq~aSwl~al~l~mGv~ti~Ls~~-yR~Pv~~aWSTPG~al---l~a 95 (402)
T COG3135 20 PQTLLAGFVAVLVGYASSLAIIIQAAQAAGASPAQIASWLTALGLAMGVSTLTLSLR-YRVPVLTAWSTPGAAL---LVA 95 (402)
T ss_pred chhhhhhhHHheeccCccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhh-hccceeeeecCccHHH---HHh
Confidence 378899999999888776655444455689999999999999999999999999988 9999987655433332 222
Q ss_pred h-cccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhCcccHHHHHHHHHhHhhhhhcCCcchhhhhH
Q 009393 120 A-GRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSGLWRNVARLLSPLAAVPLVALSGFGLYEFGFPGVAKCVEIG 198 (535)
Q Consensus 120 ~-~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~gl~~~L~~~~Pp~V~G~~i~lIGl~l~~~~~~~~~~~~~v~ 198 (535)
+ .+ .++.++.|+.+++|.+.++.|.+|.++|+++.+||.+.-.++..|=+.....+++....++.+.
T Consensus 96 sl~g------------~s~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~~~~p~l~ 163 (402)
T COG3135 96 SLGG------------LSFAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKALPTQPLLV 163 (402)
T ss_pred ccCC------------CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccCCChHHH
Confidence 2 22 5799999999999999999999999999999999987766655544433334444444566665
Q ss_pred HHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccCcCCccCCCCccccccc
Q 009393 199 LPQIIFLIIFSQYIPHLVRGERHVFDRFAVIFSVAIVWVYAHLLTVGGAYKNTGPKTQLSCRTDRAGIIGAAPWIRVPYP 278 (535)
Q Consensus 199 l~~l~l~i~l~~~~~~v~~~~~~~~~~~aiLigivvG~~~a~~lg~~~~~~~~~~~~~~~~~~d~~~~v~~ap~~~lP~~ 278 (535)
+..++.-+++ |.+ -.+++++..+++|.+++...|..+ + . ...+..+.|
T Consensus 164 lpmv~~~ll~----r~f-------~pr~aV~aalvvgv~va~~~G~~~---~----------~------~~~~~~~~p-- 211 (402)
T COG3135 164 LPMVLAYLLA----RVF-------APRYAVIAALVVGVLVAALLGDLH---T----------A------LVALEISTP-- 211 (402)
T ss_pred HHHHHHHHHH----HHc-------CchHHHHHHHHHHHHHHHHhCccc---c----------c------ccccccCcc--
Confidence 5555444443 322 237899999999999998887431 0 1 112223345
Q ss_pred ccccCCccCHhHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCccchhhhhhHHHHhhhcCCCCCccccccchh
Q 009393 279 FQWGAPSFDAGESFAM-MAASFVALVESTGAFIAVSRYASATPLPPSILSRGIGWQGVGILISGMFGTGNGSSVSVENAG 357 (535)
Q Consensus 279 ~~~g~p~f~~~~i~~~-~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~l~adGl~tilaglfG~~p~tt~s~en~g 357 (535)
.|-.|+|++.+++.+ ++++++.+...-..-.|+=|..| .++..+--+.+.|+.+++++.||+.. -|.+
T Consensus 212 -~~v~P~Fs~~A~l~lalPL~lvtmasQN~pGiAvLka~g----Y~pp~~pl~~~TGl~sll~ApfG~~t------~nLa 280 (402)
T COG3135 212 -TWVTPEFSFAAMLSLALPLFLVTMASQNLPGIAVLKAAG----YQPPPSPLIVATGLASLLSAPFGGHT------VNLA 280 (402)
T ss_pred -eeeCCcccHHHHHHHhHHHHHHHHHhccCccceeehhcC----CCCCCchHHHHhHHHHHHhcccccce------ecHH
Confidence 566789999887765 67888887655544455544444 34557789999999999999999874 4444
Q ss_pred hhhhccC--------Cc-hhH-HHHHHHHHHHHHHh-hHHHHHHHhCChHHHHHH
Q 009393 358 LLALTRV--------GS-RRV-VQISAGFMIFFSIL-GKFGAVFASIPAPIVAAL 401 (535)
Q Consensus 358 ~i~~Tgv--------~S-r~~-~~~a~~~li~l~f~-Pk~~al~~~IP~~Vlggv 401 (535)
.+...=| .+ ||. ...++.+-++.++| +.+.+++...|.+.+..+
T Consensus 281 AItAAic~gpdaHpD~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~l 335 (402)
T COG3135 281 AITAAICTGPDAHPDPARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAAL 335 (402)
T ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHH
Confidence 4332222 22 343 46777787888877 689999999998876654
No 16
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.59 E-value=5.7e-15 Score=149.89 Aligned_cols=242 Identities=19% Similarity=0.195 Sum_probs=156.7
Q ss_pred HhhhhhHHHHHHhhCcccHHHHHHHHHhHhhhhhcCCc------------c-----------h--hh---hhHHHHHHHH
Q 009393 154 LGFSGLWRNVARLLSPLAAVPLVALSGFGLYEFGFPGV------------A-----------K--CV---EIGLPQIIFL 205 (535)
Q Consensus 154 lg~~gl~~~L~~~~Pp~V~G~~i~lIGl~l~~~~~~~~------------~-----------~--~~---~v~l~~l~l~ 205 (535)
+|++|+ +++.+++|..|+..++..+|+.+...+++.+ . + ++ .++..++++.
T Consensus 1 lGllrl-G~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 79 (280)
T PF00916_consen 1 LGLLRL-GFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFL 79 (280)
T ss_pred Cccccc-cHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHH
Confidence 367787 9999999998888888888887665433211 0 0 11 1222222222
Q ss_pred HHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccCcCCcc-CCCCcccccccccccCC
Q 009393 206 IIFSQYIPHLVRGERHVFDRFAVIFSVAIVWVYAHLLTVGGAYKNTGPKTQLSCRTDRAGII-GAAPWIRVPYPFQWGAP 284 (535)
Q Consensus 206 i~l~~~~~~v~~~~~~~~~~~aiLigivvG~~~a~~lg~~~~~~~~~~~~~~~~~~d~~~~v-~~ap~~~lP~~~~~g~p 284 (535)
.....+.++. +.+...+.+..++.+++++++++.++... + .++..+.+ ...|.+.+|. .++.+
T Consensus 80 ~~~~~~~~~~--~~~~~~~~p~~li~vv~~~~~~~~~~~~~-~-----------~v~~~~~i~~~lp~~~~p~-~~~~~- 143 (280)
T PF00916_consen 80 LIIRLLPKRL--PSRFWPPIPAPLIVVVLGTLLSWLFLLDK-Y-----------GVAIVGEIPSGLPPPSLPS-FDISW- 143 (280)
T ss_pred hhhhhhhhhc--cccccccccccceeeehhhhhhhhhhhcc-c-----------cccccccccccCccccCcc-ccccc-
Confidence 2221111111 11223456778899999998887764311 0 11111111 1233344442 11111
Q ss_pred ccCHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCccchhhhhhHHHHhhhcCCCCCccccccchhhhhhccC
Q 009393 285 SFDAGESFAMMAASFVALVESTGAFIAVSRYASATPLPPSILSRGIGWQGVGILISGMFGTGNGSSVSVENAGLLALTRV 364 (535)
Q Consensus 285 ~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~l~adGl~tilaglfG~~p~tt~s~en~g~i~~Tgv 364 (535)
+.-...+...+.++++..+|++.+.+++++..+ ++.+.|||++++|++|+++|+||++|.+... .+..+....|.
T Consensus 144 ~~~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~----~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~-srs~~~~~~Ga 218 (280)
T PF00916_consen 144 SLILDLLPTALAIAIVGFIESLLIAKSIAKKTG----YRIDPNQELIALGLANIVSGLFGGMPGSGSF-SRSAVNYRAGA 218 (280)
T ss_pred ccccccchhHHHHHHHHHHHHHHhhhhhccccc----ccCCcHHHHHHhhhccccchhhccccccccc-ccchHHHhcCc
Confidence 111234556688999999999999888877654 3457899999999999999999999999998 77778888999
Q ss_pred CchhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHH-HHHHHHHhhccchhc
Q 009393 365 GSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALYCL-FFAYVGAGGLSFLQF 419 (535)
Q Consensus 365 ~Sr~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvliv-~fg~i~~~Gi~~l~~ 419 (535)
+||.+.++++++++++.++ +..++..+|.+++++++++ .+.++....++.+.|
T Consensus 219 ~t~~s~~~~~~~~l~~l~~--~~~~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~ 272 (280)
T PF00916_consen 219 RTRLSGLISALFVLLVLLF--LAPLLAYIPKAVLAAILIVVGISLIDWSSLRRLWR 272 (280)
T ss_pred ceeehhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhc
Confidence 9999998888877554333 4569999999999999987 555555555555544
No 17
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=99.51 E-value=3.1e-12 Score=144.17 Aligned_cols=328 Identities=15% Similarity=0.149 Sum_probs=207.1
Q ss_pred eeehhhHHhhhh--cCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEccccchHHHHHH-HHHhcccCCCCCChhh
Q 009393 56 TTVLIPTHLVPQ--MGGGNEEKAKMIQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVPTTIS-IILAGRYSNIVDPQEK 132 (535)
Q Consensus 56 ~~i~~P~il~~a--~Gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~~~~~-i~~~~g~~~~~~~~~~ 132 (535)
+++.+|--++-+ +|+++ ...+..+.++.++-.+||+--++..||.. .+..++. ++.+.-..... ..+
T Consensus 91 g~l~VPQ~iaYa~la~lpp-------iyGLYssf~~~~iY~~fGtsr~isiG~~a-v~sLmv~~~v~~~v~~~~~--~~~ 160 (665)
T KOG0236|consen 91 GSLSVPQGLAYALLAGLPP-------IYGLYSSFFPPLIYAIFGTSRHVSIGPFA-VVSLMVGTVVSQVVLSEAP--SND 160 (665)
T ss_pred eeeecchHHHHHHHcCCCh-------HHHHHHHHHHHHHheeccCCCcccccHHH-HHHHHHHHHHHHHHhccCC--CcC
Confidence 345566655433 67777 47889999999999999999999888832 1221111 11110000000 001
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhCcccHHHHHHHHHhHhhhhhc------CCcc--------------
Q 009393 133 FERIMRGTQGALIVASTLQIVLGFSGLWRNVARLLSPLAAVPLVALSGFGLYEFGF------PGVA-------------- 192 (535)
Q Consensus 133 ~~~~~~~~~ga~lvaGvi~illg~~gl~~~L~~~~Pp~V~G~~i~lIGl~l~~~~~------~~~~-------------- 192 (535)
....++.+...++++|++|+++|++|+ +.+.+++|..++-.+....++.+...++ ++..
T Consensus 161 ~~~~i~va~~lt~l~Giiq~~mG~lrL-Gfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~ 239 (665)
T KOG0236|consen 161 IATTIQVATTLTFLTGIIQLILGLLRL-GFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFD 239 (665)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHH
Confidence 125688999999999999999999998 9999999976665555555554443322 2111
Q ss_pred ---h------hhhhHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccCc
Q 009393 193 ---K------CVEIGLPQIIFLIIFSQYIPHLVRGERHVFDRFAVIFSVAIVWVYAHLLTVGGAYKNTGPKTQLSCRTDR 263 (535)
Q Consensus 193 ---~------~~~v~l~~l~l~i~l~~~~~~v~~~~~~~~~~~aiLigivvG~~~a~~lg~~~~~~~~~~~~~~~~~~d~ 263 (535)
. .+.+++..+++.+....+.++.. ++-.+...+.-++.+++++++++.+.....+.. ..++
T Consensus 240 ~~~~~~~~~~~~~~~l~~l~~L~~~k~~~~~~~-~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~--------~~~~- 309 (665)
T KOG0236|consen 240 LLANLPKTLATLVLSLIFLVVLLLTKELNPKFK-KKLFSVPIPFELIVVIIGTLISYIFRLEGRYGP--------IIVG- 309 (665)
T ss_pred hhhcccccchhhhhHHHHHHHHHHHHHhhhhhc-ccceeecccHHHHHHHHHHHHHHHhccccccCC--------eeec-
Confidence 0 12334333333332221222211 111124456789999999999988865321110 0111
Q ss_pred CCccCCCCcccccccccccCCccCHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCccchhhhhhHHHHhhhc
Q 009393 264 AGIIGAAPWIRVPYPFQWGAPSFDAGESFAMMAASFVALVESTGAFIAVSRYASATPLPPSILSRGIGWQGVGILISGMF 343 (535)
Q Consensus 264 ~~~v~~ap~~~lP~~~~~g~p~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~l~adGl~tilaglf 343 (535)
..-...|..++|. +.+....+...+.+.++++.|+++--++.++..+ ..-+-||+++|-|++|+++++|
T Consensus 310 -~i~~g~~~~~lp~------~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~----y~vd~nqELiAlG~~Ni~sSff 378 (665)
T KOG0236|consen 310 -EIPRGFPPPSLPP------LSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHG----YKVDSNQELIALGISNILSSFF 378 (665)
T ss_pred -cCCCCCCCCCCCC------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CeeCCChHHHHHHHHHHhhhhh
Confidence 0011122223331 1222345666899999999999987777776543 3456899999999999999999
Q ss_pred CCCCCccccccchhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHH-HHH-HHHHhhccchh
Q 009393 344 GTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALYCL-FFA-YVGAGGLSFLQ 418 (535)
Q Consensus 344 G~~p~tt~s~en~g~i~~Tgv~Sr~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvliv-~fg-~i~~~Gi~~l~ 418 (535)
++.|.|... .+..+...+|++++.+.++.++..++.-+ .++.++..+|.++++++.+. +.+ ++-...+..+.
T Consensus 379 ~~~p~tgs~-sRSav~~~sG~~T~~s~i~~~~~vl~~l~--~l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~~~lw 452 (665)
T KOG0236|consen 379 GCYPTTGSF-SRSAVNIKSGGRTQVAGIVSAALVLLALL--FLGPLFYYIPKCVLAAIIISALIGMLIQLEDLKPLW 452 (665)
T ss_pred ceEcccchh-hHHHHHhhcCCcchHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHhhHHHhhhhhhhhhe
Confidence 999999999 99999999999999997666555443322 35679999999999999886 444 34444443333
No 18
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=98.39 E-value=0.00033 Score=81.08 Aligned_cols=316 Identities=13% Similarity=0.128 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcceeEccccchHH---HHHHHHHhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHh
Q 009393 79 IQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVP---TTISIILAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLG 155 (535)
Q Consensus 79 i~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~---~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg 155 (535)
++=++++++++.++.+++|..--.++|++.-.+. .+..++..++. .-++...=..+.++++.++++
T Consensus 403 v~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~~~~~-----------~yl~~~~WigiW~~~~~~lla 471 (900)
T TIGR00834 403 VSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCESNGL-----------EYLVGRVWIGLWLVLLVLLLV 471 (900)
T ss_pred HHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHhhcCC-----------chHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999996665566777643332 22233333321 012222223567778888888
Q ss_pred hhhhHHHHHHhhCcccHHHHHHHHHhHhhhhhcCCc--------------------------------------------
Q 009393 156 FSGLWRNVARLLSPLAAVPLVALSGFGLYEFGFPGV-------------------------------------------- 191 (535)
Q Consensus 156 ~~gl~~~L~~~~Pp~V~G~~i~lIGl~l~~~~~~~~-------------------------------------------- 191 (535)
.+.. ..++|+++.-.-=.+-++|++.-+..+++..
T Consensus 472 ~~~~-s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (900)
T TIGR00834 472 ATEG-SFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPKPQGPSVSALLEKDCSKLGGTLG 550 (900)
T ss_pred HHhH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccccccccccccccccccccc
Confidence 8876 7788888875433333344442221111000
Q ss_pred c-hh---hhhHHHHHHH---HHHHHHhhhcccc------ccccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc
Q 009393 192 A-KC---VEIGLPQIIF---LIIFSQYIPHLVR------GERHVFDRFAVIFSVAIVWVYAHLLTVGGAYKNTGPKTQLS 258 (535)
Q Consensus 192 ~-~~---~~v~l~~l~l---~i~l~~~~~~v~~------~~~~~~~~~aiLigivvG~~~a~~lg~~~~~~~~~~~~~~~ 258 (535)
+ ++ ...++..+++ ++.+..++|++.+ +.|+.+.=+++.|++++-+.+.+.++.. +.+..
T Consensus 551 ~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v~~~~~~v--~~~kl------ 622 (900)
T TIGR00834 551 GNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIGDT--YTQKL------ 622 (900)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHHHHHHhccC--ccccc------
Confidence 0 00 1223333322 2333334444321 1233444578999999988888876521 11100
Q ss_pred cccC-cCCcc-CCCCcccccccccccCCccC-HhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCccchhhhhh
Q 009393 259 CRTD-RAGII-GAAPWIRVPYPFQWGAPSFD-AGESFAMMAASFVALVESTGAFIAVSRYASATPLPPSILSRGIGWQGV 335 (535)
Q Consensus 259 ~~~d-~~~~v-~~ap~~~lP~~~~~g~p~f~-~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~l~adGl 335 (535)
...+ |...- ..-.|+--|.......|.+. ..++++.+.+++.-++|+-=+..-+++. +.+-.+....+=-++.-|+
T Consensus 623 ~Vp~~f~pt~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~~-e~kLkKgsgyH~Dllllg~ 701 (900)
T TIGR00834 623 SVPSGLKVTNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSKK-ERKLKKGSGFHLDLLLVVG 701 (900)
T ss_pred CCCCCcCCCCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCc-cccCCCCcccchHHHHHHH
Confidence 0001 11100 11345532210000012221 3556677888888888876444433332 1222334456667888999
Q ss_pred HHHHhhhcCCCCCccccccchhhhh-h---------------ccCC-chhHHHHHHHHH-HHHHHhhHHHHHHHhCChHH
Q 009393 336 GILISGMFGTGNGSSVSVENAGLLA-L---------------TRVG-SRRVVQISAGFM-IFFSILGKFGAVFASIPAPI 397 (535)
Q Consensus 336 ~tilaglfG~~p~tt~s~en~g~i~-~---------------Tgv~-Sr~~~~~a~~~l-i~l~f~Pk~~al~~~IP~~V 397 (535)
-+.++|++|-...++...++.-.+. . .+|. .|.+....+++. +.+.+.| ++..||.+|
T Consensus 702 ~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLiglsv~~~P----vL~~IP~aV 777 (900)
T TIGR00834 702 MGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVLVGLSILMEP----ILKRIPLAV 777 (900)
T ss_pred HHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHHHHHHHHHHH----HHhhccHHH
Confidence 9999999998766665434432221 1 1222 244544444432 2233334 899999999
Q ss_pred HHHHHHHHHHHHHHhhccchhcc
Q 009393 398 VAALYCLFFAYVGAGGLSFLQFC 420 (535)
Q Consensus 398 lggvliv~fg~i~~~Gi~~l~~v 420 (535)
+.|+++|+ |.-...|.|.+.|+
T Consensus 778 L~GvFlYM-Gv~SL~GnQ~~~Ri 799 (900)
T TIGR00834 778 LFGIFLYM-GVTSLSGIQLFDRL 799 (900)
T ss_pred HHHHHHHH-HHhhcccCHHHHHH
Confidence 99999994 77778888876554
No 19
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=98.25 E-value=0.00067 Score=77.06 Aligned_cols=343 Identities=11% Similarity=0.077 Sum_probs=185.5
Q ss_pred HHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEccccchHH---HHHHHHHhcccC
Q 009393 48 QHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVP---TTISIILAGRYS 124 (535)
Q Consensus 48 Qh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~---~~~~i~~~~g~~ 124 (535)
...+.++.+++.+-+-.+..++-.. +-..-++=+++.+.++.++.+++|..--+++|++.-.+. .+...+..+++
T Consensus 364 a~~lfiYfa~l~P~ItFG~ll~~~T-dg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~~~~~- 441 (876)
T KOG1172|consen 364 AATLFIYFACLLPAITFGGLLGEAT-DGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCKDNGL- 441 (876)
T ss_pred hHHHHHHHHhhhhHhhHHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHhhCCC-
Confidence 4445555555444444333322222 223446788999999999999998777778888643322 22333443321
Q ss_pred CCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhCcc---cHHHHHHHHHhHhhh-----------hhcC-
Q 009393 125 NIVDPQEKFERIMRGTQGALIVASTLQIVLGFSGLWRNVARLLSPL---AAVPLVALSGFGLYE-----------FGFP- 189 (535)
Q Consensus 125 ~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~gl~~~L~~~~Pp~---V~G~~i~lIGl~l~~-----------~~~~- 189 (535)
.-++-..=..+...++.++++.+.. ..++++|+.. +-+..|.+|=+.-.- ....
T Consensus 442 ----------dyl~~r~wVglW~~~l~illaa~~a-s~lv~~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~ 510 (876)
T KOG1172|consen 442 ----------DYLAFRAWVGLWTAFLLILLAATNA-SSLVKYITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDS 510 (876)
T ss_pred ----------chhhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccc
Confidence 1122223345677788888888876 7888888864 455544443221100 0100
Q ss_pred ----------Ccc---------h--hhhhHHHHH---HHHHHHHHhhhccccc------cccccchhhHHHHHHHHHHHH
Q 009393 190 ----------GVA---------K--CVEIGLPQI---IFLIIFSQYIPHLVRG------ERHVFDRFAVIFSVAIVWVYA 239 (535)
Q Consensus 190 ----------~~~---------~--~~~v~l~~l---~l~i~l~~~~~~v~~~------~~~~~~~~aiLigivvG~~~a 239 (535)
... . ....++..+ +.++.++.++|++.++ .|.++.=+++.+++++-+.+.
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~ 590 (876)
T KOG1172|consen 511 KPNPGADWSGPECESVSGTLLGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLID 590 (876)
T ss_pred cCCcccccccccccccCcccCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHH
Confidence 000 0 022233332 3334444456655321 123444478999999988888
Q ss_pred HHHhhcCCCCCCCCCCccccc-cCcCCccCC-CCcccccccccccCCccC-HhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009393 240 HLLTVGGAYKNTGPKTQLSCR-TDRAGIIGA-APWIRVPYPFQWGAPSFD-AGESFAMMAASFVALVESTGAFIAVSRYA 316 (535)
Q Consensus 240 ~~lg~~~~~~~~~~~~~~~~~-~d~~~~v~~-ap~~~lP~~~~~g~p~f~-~~~i~~~~~~~lv~~~esiG~~~av~~~~ 316 (535)
+..+.. ++++. .+ ..++..-.. -.|+-.|. . ..|.+. ..++++.+.+++.-++|+-=+..-+++.
T Consensus 591 ~~~~~~--~~~kl------~vp~~~~~t~~~~rgw~v~~~-~--~~P~~~~~~A~ipalll~iLiFmDqqIts~iv~rk- 658 (876)
T KOG1172|consen 591 YFGGSV--ETPKL------PVPSVFPPTWPFDRGWFVPPF-G--KNPWWYVFAALIPALLLTILIFMDQQITAVIVNRK- 658 (876)
T ss_pred hhcccc--CCCcc------ccCcCCCCCCcccCCeeeCCC-C--CCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhhcc-
Confidence 777531 11110 01 011111111 24554331 0 122221 3456667778888888875433322222
Q ss_pred cCCCCCCccCccchhhhhhHHHHhhhcCCCCCccccccchhhhhhc----------------cCCc-hhHHHHHHHHHHH
Q 009393 317 SATPLPPSILSRGIGWQGVGILISGMFGTGNGSSVSVENAGLLALT----------------RVGS-RRVVQISAGFMIF 379 (535)
Q Consensus 317 ~~~~~~~~~~~r~l~adGl~tilaglfG~~p~tt~s~en~g~i~~T----------------gv~S-r~~~~~a~~~li~ 379 (535)
+.+-.+....+=-++.-|+-+.++|++|=...++...++...+..= +|.. |.+....+++..
T Consensus 659 e~kLKKgsgyH~DLlllgil~~icsllGLPw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llvg- 737 (876)
T KOG1172|consen 659 ENKLKKGSGYHLDLLLLGILTLICSLLGLPWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLVG- 737 (876)
T ss_pred cccCCCCcchhHHHHHHHHHHHHHHhcCCCccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHHH-
Confidence 2222333455557899999999999999888777765666544321 1222 444444444333
Q ss_pred HHHhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccchhc
Q 009393 380 FSILGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQF 419 (535)
Q Consensus 380 l~f~Pk~~al~~~IP~~Vlggvliv~fg~i~~~Gi~~l~~ 419 (535)
+. -....++..||.+|+.|+..|| |.-...|.|..++
T Consensus 738 ls--~~~~pvL~~IP~~VL~GvFlYM-gv~SL~Gnqf~eR 774 (876)
T KOG1172|consen 738 LS--VLLLPVLKLIPMPVLYGVFLYM-GVSSLPGNQFFER 774 (876)
T ss_pred HH--HHHHHHHhhccHHHHHHHHHHH-hhccCCccHHHHH
Confidence 22 2245589999999999999994 6666677776544
No 20
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=97.84 E-value=0.0055 Score=63.68 Aligned_cols=314 Identities=15% Similarity=0.148 Sum_probs=172.2
Q ss_pred hcCCChHHHH------HHHHHHHHHHHHHHHHHHHhcCCcceeEccccchHHHHHHHHHhcccCCCCCChhhhhhhHHHH
Q 009393 67 QMGGGNEEKA------KMIQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVPTTISIILAGRYSNIVDPQEKFERIMRGT 140 (535)
Q Consensus 67 a~Gl~~~~~~------~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~~~g~~~~~~~~~~~~~~~~~~ 140 (535)
.+|++++-.. .++.+.+|+.-+.+++.- .+|++=-.||--..++ .++++. +-+-+
T Consensus 86 ~lgL~~~Fv~envR~EllI~a~lFvil~Sgfl~P--~anLAGthgPmIpLIp---~ivaaG--------------gHPLa 146 (492)
T PF11840_consen 86 PLGLSPEFVIENVRYELLIAALLFVILFSGFLNP--RANLAGTHGPMIPLIP---LIVAAG--------------GHPLA 146 (492)
T ss_pred ccCCChhHhhhhhhhhhhHHHHHHHHHHHhccCc--cccccCCCCCcchhhH---HHHHcC--------------CCcHH
Confidence 3677765222 334444444444443332 4677777777555555 333322 22444
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhCcccHHHHHHHHHhHh----hhhhcCCcc--hhhhhHHHHHHHHHHHHHhhhc
Q 009393 141 QGALIVASTLQIVLGFSGLWRNVARLLSPLAAVPLVALSGFGL----YEFGFPGVA--KCVEIGLPQIIFLIIFSQYIPH 214 (535)
Q Consensus 141 ~ga~lvaGvi~illg~~gl~~~L~~~~Pp~V~G~~i~lIGl~l----~~~~~~~~~--~~~~v~l~~l~l~i~l~~~~~~ 214 (535)
+| ++-|++-+++++++--.++.++-...|.|..+...|+.= ...-..++. +...++.+.+++.+++..|+.+
T Consensus 147 lg--ilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~kl~~wa~~~~~~~i~fvvi~~tiv~Ya~L~k 224 (492)
T PF11840_consen 147 LG--ILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIKKLFAWANGFDMGYIAFVVIIVTIVLYAYLAK 224 (492)
T ss_pred HH--HHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHH
Confidence 44 456889999999988889999999988887766666521 111111111 1234666666666666556655
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccCcCCccCCCCcccccccccccCCccCH-hHHHH
Q 009393 215 LVRGERHVFDRFAVIFSVAIVWVYAHLLTVGGAYKNTGPKTQLSCRTDRAGIIGAAPWIRVPYPFQWGAPSFDA-GESFA 293 (535)
Q Consensus 215 v~~~~~~~~~~~aiLigivvG~~~a~~lg~~~~~~~~~~~~~~~~~~d~~~~v~~ap~~~lP~~~~~g~p~f~~-~~i~~ 293 (535)
+-| |+.++-++-+++-++++.+|..-.+..++. ..+++ ..=|..--+-++.|+|.++- -+.++
T Consensus 225 ~~K------rWLaIPl~~~~a~~~a~~lGa~f~f~t~pg------lp~ln----P~YWWge~tGw~LglP~~~hfiav~P 288 (492)
T PF11840_consen 225 IEK------RWLAIPLCSILAGVLAFALGAPFEFTTEPG------LPNLN----PMYWWGEETGWQLGLPTLEHFIAVLP 288 (492)
T ss_pred hcc------chhhhhHHHHHHHHHHHHcCCCceeecCCC------CCCCC----CcccccCCcccccCCCcHHHHHHhcc
Confidence 422 467777777788888888875311110000 00111 11122222234566676431 22222
Q ss_pred HH-HHHHHHHHHHHHHHHHHHhhhcCCC--CCCccCccchhhhhhHHHHhhhcCCCCCccccccchhhh-hhccCCchhH
Q 009393 294 MM-AASFVALVESTGAFIAVSRYASATP--LPPSILSRGIGWQGVGILISGMFGTGNGSSVSVENAGLL-ALTRVGSRRV 369 (535)
Q Consensus 294 ~~-~~~lv~~~esiG~~~av~~~~~~~~--~~~~~~~r~l~adGl~tilaglfG~~p~tt~s~en~g~i-~~Tgv~Sr~~ 369 (535)
+. .....=.-|.+|+-. .++.+-.+. +..-+++..+...++=+++++++|+-..+++- .+--+- ++.|.-=+-.
T Consensus 289 FAiLAVaMWSpDflghrv-Fqelnypk~~~kvlMnvDDTm~~~siRQ~vGs~lGGgN~~SsW-gTymIPaaIaKRPIpgg 366 (492)
T PF11840_consen 289 FAILAVAMWSPDFLGHRV-FQELNYPKETKKVLMNVDDTMTMCSIRQIVGSILGGGNIASSW-GTYMIPAAIAKRPIPGG 366 (492)
T ss_pred HHHHHHHHhCchHHHHHH-HHHhcCchhhcceeecccchhHHHHHHHHHhhcccCCcccccc-hhhhhhHHHhcCCCCch
Confidence 22 122223457777644 455442211 22247889999999999999999998665554 222111 2234443444
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHH-HHHHHHHhhccchhccc
Q 009393 370 VQISAGFMIFFSILGKFGAVFASIPAPIVAALYCL-FFAYVGAGGLSFLQFCN 421 (535)
Q Consensus 370 ~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvliv-~fg~i~~~Gi~~l~~v~ 421 (535)
.+..++++++.+... .- .=..+=.||+--++++ +|=-+.-.|+|+.++-+
T Consensus 367 AiLtg~~Ci~~av~G-yP-Mdlavw~Pvl~vALlvGVflPLleAGmqm~r~~k 417 (492)
T PF11840_consen 367 AILTGLLCIVAAVWG-YP-MDLAVWPPVLRVALLVGVFLPLLEAGMQMTRKGK 417 (492)
T ss_pred HHHHHHHHHHHHHhc-Cc-chhhhcccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 567777777776653 00 1112224677777776 66667788998877533
No 21
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=96.28 E-value=0.0026 Score=69.98 Aligned_cols=185 Identities=13% Similarity=0.147 Sum_probs=2.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccc-CcCCccCC-CCcccccccccccCCccC-HhHHHHHHH
Q 009393 220 RHVFDRFAVIFSVAIVWVYAHLLTVGGAYKNTGPKTQLSCRT-DRAGIIGA-APWIRVPYPFQWGAPSFD-AGESFAMMA 296 (535)
Q Consensus 220 ~~~~~~~aiLigivvG~~~a~~lg~~~~~~~~~~~~~~~~~~-d~~~~v~~-ap~~~lP~~~~~g~p~f~-~~~i~~~~~ 296 (535)
|..+.=+++.|++++-+.+...++.. .++ .... ++.....+ -+|+--|. ...|.+. ..++++.+.
T Consensus 277 R~~isDf~v~iaI~~~~~~~~~~~~~---~~k------L~vp~~f~pt~~~~r~W~v~p~---~~~p~w~~~aA~~pall 344 (510)
T PF00955_consen 277 REIISDFGVPIAILIMTLVDYLFGVD---TPK------LNVPSSFKPTSPGKRGWFVNPF---GSLPWWAIFAAIIPALL 344 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHHhhHHHHHHHHHHHHHHHhccc---ccc------cCCCCCCCCCCCCCCCeecCcc---cCCCHHHHHHHHHHHHH
Confidence 34455578999999888877665521 010 0000 12111111 34554331 1123222 244555667
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCccCccchhhhhhHHHHhhhcCCCCCccccccchhhhh----------------
Q 009393 297 ASFVALVESTGAFIAVSRYASATPLPPSILSRGIGWQGVGILISGMFGTGNGSSVSVENAGLLA---------------- 360 (535)
Q Consensus 297 ~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~l~adGl~tilaglfG~~p~tt~s~en~g~i~---------------- 360 (535)
+++.-++|+-=+..-+++. +.+-.+....+=.+..-|+-+.+.|++|-...++...++.-.+.
T Consensus 345 l~iL~F~DqnIts~ivn~~-e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~pGe~~~ 423 (510)
T PF00955_consen 345 LTILFFMDQNITSLIVNRP-ENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAPGEKPK 423 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhHhHHHhCCh-hhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccCCCCCe
Confidence 7777777754332222221 12223344555678999999999999997766664323332221
Q ss_pred hccCCc-hhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccchhccc
Q 009393 361 LTRVGS-RRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCN 421 (535)
Q Consensus 361 ~Tgv~S-r~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvliv~fg~i~~~Gi~~l~~v~ 421 (535)
..+++. |.......+ |+ ++..-+..++..||.||+.|+.+|+ |.-...|.|.++|+.
T Consensus 424 i~~V~EqRvT~l~~~~-Li--gls~~l~pvL~~IP~~VL~GvFlym-G~~sL~gnq~~~Ri~ 481 (510)
T PF00955_consen 424 IVGVREQRVTGLLVHL-LI--GLSLFLLPVLKLIPMPVLYGVFLYM-GVTSLSGNQFFERIL 481 (510)
T ss_dssp ---------------------------------------------------------TTTT-
T ss_pred eCeEEEecccHHHHHH-HH--HHHHHHHHHHHHhhHHHHHHHHHhh-eeeeecCccHHHHHH
Confidence 112222 333333333 22 3333355689999999999999994 556666666665543
No 22
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=85.43 E-value=15 Score=39.49 Aligned_cols=140 Identities=16% Similarity=0.158 Sum_probs=82.2
Q ss_pred hhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEccccchHHHHHHHHHhcccCCCCCChhhhhhhHHHHHHHH
Q 009393 65 VPQMGGGNEEKAKMIQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVPTTISIILAGRYSNIVDPQEKFERIMRGTQGAL 144 (535)
Q Consensus 65 ~~a~Gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ga~ 144 (535)
.++.|-+.. +...+..+|++|++-+.|| ..++.++ -+. .+++... +...+ ...=.++.
T Consensus 247 l~aaGy~~p-----~~~~~~~tGl~sll~ApfG-g~~~nla----ait--aAic~G~--~ah~d--------~~rR~~a~ 304 (395)
T TIGR00843 247 LKAAGYNAP-----AKPIIAAAGLAALFAAFAG-GISIGIA----AIT--AAICMGK--DAHED--------KDKRWIAA 304 (395)
T ss_pred HHHcCCCCC-----chHHHHHHHHHHHHHhccC-Cchhhhh----HHh--HHHhcCc--ccccC--------cCccchHH
Confidence 344555443 3778889999999999995 3333211 111 2233211 11111 12224678
Q ss_pred HHHHHHHHHHhhh-hhHHHHHHhhCcccHHHHHHHHHhHhhhhhcCCc------chhhhhHHHHHHHHHHHHHhhhcccc
Q 009393 145 IVASTLQIVLGFS-GLWRNVARLLSPLAAVPLVALSGFGLYEFGFPGV------AKCVEIGLPQIIFLIIFSQYIPHLVR 217 (535)
Q Consensus 145 lvaGvi~illg~~-gl~~~L~~~~Pp~V~G~~i~lIGl~l~~~~~~~~------~~~~~v~l~~l~l~i~l~~~~~~v~~ 217 (535)
+.+|++++++|++ +....+...+|+..+... -|+-+...-.+++ .++..-+++|++++ ..++
T Consensus 305 i~~Gv~yll~glfag~i~~l~~~~P~~li~~l---aGlAll~~~~~~l~~a~~~~~~r~~a~~tflvt------aSg~-- 373 (395)
T TIGR00843 305 AAAGIFYLLAGLFAGAITALFAALPKELIAAL---AGLALLGAIAGNIKIALHEDQERDAALIAFLAT------ASGL-- 373 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH------HhcC--
Confidence 8999999999988 777888999999876653 3443332211111 12334455665554 2232
Q ss_pred ccccccchhhHHHHHHHHHHHHH
Q 009393 218 GERHVFDRFAVIFSVAIVWVYAH 240 (535)
Q Consensus 218 ~~~~~~~~~aiLigivvG~~~a~ 240 (535)
.++...+-++|+++|.+..+
T Consensus 374 ---~~~gigaafWgl~~G~~~~~ 393 (395)
T TIGR00843 374 ---HFLGIGSAFWGLCAGGLAYF 393 (395)
T ss_pred ---CcccccHHHHHHHHHHHHHH
Confidence 34668999999999977554
No 23
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=84.68 E-value=6.7 Score=44.14 Aligned_cols=121 Identities=19% Similarity=0.195 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCccchhhhhhHHHHhhhcCCCCCccccccchhhh-------h--
Q 009393 290 ESFAMMAASFVALVESTGAFIAVSRYASATPLPPSILSRGIGWQGVGILISGMFGTGNGSSVSVENAGLL-------A-- 360 (535)
Q Consensus 290 ~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~l~adGl~tilaglfG~~p~tt~s~en~g~i-------~-- 360 (535)
-++.-+.++++.+=|+++-.. .+|-+ ...|+.+.=++.++.++||+++..... ...+.. +
T Consensus 24 Dl~AGltva~valP~ama~a~----~aGv~------p~~GLyas~i~~~v~alfGgs~~~i~G-Pt~a~~~v~a~~i~~~ 92 (554)
T COG0659 24 DLLAGLTVAAVALPLAMAFAI----AAGVP------PEAGLYASIVAGIIYALFGGSRGLISG-PTGAFAVVLAAVIASL 92 (554)
T ss_pred HHHHHHHHHHHHhHHHHHHHH----HcCCC------HHHHHHHHHHHHHHHHHHcCCccceec-cchhhHHHHHHHHHHH
Confidence 355667778888888887433 44433 236999999999999999999887554 333222 1
Q ss_pred -hccCC-chhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccchhcccC
Q 009393 361 -LTRVG-SRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNL 422 (535)
Q Consensus 361 -~Tgv~-Sr~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvliv~fg~i~~~Gi~~l~~v~~ 422 (535)
.+|.. .-.+...+|++.+++|++ |++.++..||.+|+-|.+-=+--.|....+..+...+.
T Consensus 93 ~~~g~~~~~~~tllaGv~~i~~G~l-RLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~ 155 (554)
T COG0659 93 VETGLALAFLATLLAGVFQILLGLL-RLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLAS 155 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 12211 122346788888888876 89999999999999998865545556666655544444
No 24
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=83.14 E-value=14 Score=41.61 Aligned_cols=116 Identities=16% Similarity=0.214 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCccchhhhhhHHHHhhhcCCCCCccccccch-hhh-----hhccC
Q 009393 291 SFAMMAASFVALVESTGAFIAVSRYASATPLPPSILSRGIGWQGVGILISGMFGTGNGSSVSVENA-GLL-----ALTRV 364 (535)
Q Consensus 291 i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~l~adGl~tilaglfG~~p~tt~s~en~-g~i-----~~Tgv 364 (535)
++.-+.++++.+-|+++- +..++.++ .-|+.+--+..++.++||+++......+++ ..+ ..-+.
T Consensus 18 i~aGltv~~~~iP~~~ay----A~laglpp------~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~~~ 87 (563)
T TIGR00815 18 LMAGLTVGILLIPQAMAY----AILAGLSP------IYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVGL 87 (563)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHcCCCc------hhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 456677888888888863 34555432 347999999999999999999887763332 111 11111
Q ss_pred Cch----------hHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccch
Q 009393 365 GSR----------RVVQISAGFMIFFSILGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFL 417 (535)
Q Consensus 365 ~Sr----------~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvliv~fg~i~~~Gi~~l 417 (535)
... .....+|+++++++++ |++.+...||.+|+.|.+.-+.-.++.+.++.+
T Consensus 88 ~~~~~~~~~~~a~~l~~l~Gi~~~~~g~l-rlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~ 149 (563)
T TIGR00815 88 QYLFDCDAIRLAFTLTLLAGIFQVILGLL-RLGFLIEFLSHAVISGFMTGAAITIGLSQLKGL 149 (563)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 4457888889999876 799999999999999988765555554444444
No 25
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=75.06 E-value=85 Score=33.62 Aligned_cols=163 Identities=18% Similarity=0.276 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHH-HHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEccccchHHHHHHH
Q 009393 39 WPEAILLGFQHY-LVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVPTTISI 117 (535)
Q Consensus 39 ~~~~i~~GlQh~-l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i 117 (535)
+...+-.++=-+ .+|..-+ ..-+.+-++.|.++. ++..+..+|+++++.+.||. .++ ..-....++
T Consensus 205 ~~a~v~lalPL~ivtmasQn-lpG~aVL~a~GY~~p-----~~~~~~~tGl~s~l~ApfGg-~~~------nlAaitaAI 271 (378)
T PF03594_consen 205 WSALVSLALPLFIVTMASQN-LPGIAVLRAAGYQPP-----VNPLITVTGLASLLAAPFGG-HAV------NLAAITAAI 271 (378)
T ss_pred HHHHHHHHHHHHHHHHHhcc-hHHHHHHHHcCCCCC-----chHHHHHHHHHHHHHhhhch-hhh------HHHHHHHHH
Confidence 333344444333 3333333 333444455677665 46777889999999999852 222 112222334
Q ss_pred HHhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHhhCcccHHHHHHHHHhHhhhh-------hcC
Q 009393 118 ILAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSG-LWRNVARLLSPLAAVPLVALSGFGLYEF-------GFP 189 (535)
Q Consensus 118 ~~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~g-l~~~L~~~~Pp~V~G~~i~lIGl~l~~~-------~~~ 189 (535)
+... +.+.++ ...| -+-+.+|++++++|++. ..-.+...+|+..+.. +-|+.+... ++.
T Consensus 272 c~g~--eah~dp----~rRy----~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~---lAGLALlg~l~~sl~~A~~ 338 (378)
T PF03594_consen 272 CAGP--EAHPDP----SRRY----IAAVAAGVFYLLFGLFAAALVALFAALPPALIAA---LAGLALLGTLGGSLQTAFS 338 (378)
T ss_pred HcCC--ccCCCc----ccch----HHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 4321 111122 2334 34678899999999863 2244566678766554 334433332 222
Q ss_pred CcchhhhhHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHH
Q 009393 190 GVAKCVEIGLPQIIFLIIFSQYIPHLVRGERHVFDRFAVIFSVAIVWVYA 239 (535)
Q Consensus 190 ~~~~~~~v~l~~l~l~i~l~~~~~~v~~~~~~~~~~~aiLigivvG~~~a 239 (535)
+ ..+..-++++++++ ..++ .++...+-++|+++|.++.
T Consensus 339 ~-~~~r~aAlvtFlvt------aSGi-----sl~gIgaafWgLv~G~~~~ 376 (378)
T PF03594_consen 339 D-EKYREAALVTFLVT------ASGI-----SLLGIGAAFWGLVAGLLVH 376 (378)
T ss_pred C-cchhHHHHHHHHHH------HcCC-----CcccccHHHHHHHHHHHHH
Confidence 1 11234455555544 2232 3567899999999998864
No 26
>PRK11660 putative transporter; Provisional
Probab=69.10 E-value=31 Score=38.96 Aligned_cols=114 Identities=11% Similarity=0.150 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCccchhhhhhHHHHhhhcCCCCCccccccchhhhhhc-------
Q 009393 290 ESFAMMAASFVALVESTGAFIAVSRYASATPLPPSILSRGIGWQGVGILISGMFGTGNGSSVSVENAGLLALT------- 362 (535)
Q Consensus 290 ~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~l~adGl~tilaglfG~~p~tt~s~en~g~i~~T------- 362 (535)
-++.-+++.++.+-|+++- +..++.++ .-|+.+--++.++.++||+++......++. .....
T Consensus 32 D~iAGltv~~~~iPq~may----A~lag~pp------~~GLysa~~~~~vyal~Gss~~~~~Gp~a~-~~~~~~~~~~~~ 100 (568)
T PRK11660 32 DLIAGITVGIIAIPLAMAL----AIASGVPP------QYGLYTAAVAGIVIALTGGSRFSVSGPTAA-FVVILYPVSQQF 100 (568)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHcCCCh------HHHHHHHHHHHHHHHHhcCCCCcccChhHH-HHHHHHHHHHHh
Confidence 3556678888888888873 34555432 138999999999999999999887763322 21111
Q ss_pred cCC-chhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhcc
Q 009393 363 RVG-SRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALYCLFFAYVGAGGLS 415 (535)
Q Consensus 363 gv~-Sr~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvliv~fg~i~~~Gi~ 415 (535)
+.. .-.....+|++.++++++ +++.+...||.+|+.|.+.-+--.++...++
T Consensus 101 ~~~~~~~~~~l~Gii~~l~gll-rlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~ 153 (568)
T PRK11660 101 GLAGLLVATLMSGIILILMGLA-RLGRLIEYIPLSVTLGFTSGIGIVIATLQIK 153 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhhHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 111 112256788888889987 6999999999999998876433334444433
No 27
>KOG4085 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.26 E-value=24 Score=32.35 Aligned_cols=124 Identities=15% Similarity=0.093 Sum_probs=67.1
Q ss_pred cCCchhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccch---hcccCCC------CcceEeehh
Q 009393 363 RVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFL---QFCNLNS------FRTKFILGF 433 (535)
Q Consensus 363 gv~Sr~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvliv~fg~i~~~Gi~~l---~~v~~~~------~rn~~ivg~ 433 (535)
+--+|.+.+.++++.++++.+- .++.=|.-..++++.++-|.+.+. ++-= +.+||-+ +|..+--=.
T Consensus 29 r~l~rl~gilgaf~~~~fGvf~----~ITls~~c~vAgvlqm~agfivll-lEAPfCCqFv~F~n~iAekves~~lw~kA 103 (175)
T KOG4085|consen 29 RWLCRLSGILGAFSCAIFGVFN----CITLSPLCIVAGVLQMMAGFIVLL-LEAPFCCQFVEFANTIAEKVESLRLWQKA 103 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----HHhhhHHHHHHHHHHHHHHHHHHH-HccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346778888888888877665 778888888888888776666432 1000 1122210 112222222
Q ss_pred hHHhhcch-hHHhhhhhhccCCCCcccccccccccccccccchhHHHHHHHHHHHhhcCCCCchhhhccccccccccc
Q 009393 434 SFFMGLSI-PQYFNEYTAVNGYGPVHTGARWFNDMINVPFSSEPFVAGLLAYVLDVTLHKKDNATRKDRGMHWWDRFR 510 (535)
Q Consensus 434 sl~~Gl~~-p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g~l~ailLn~~~~~~~~~~~~~~~~~~~~~~~ 510 (535)
.+-.++++ |-++ --.++.+++||++.++=+---+..+=.+.|+..-...+.++|+.+.
T Consensus 104 ~~Y~aMavvPI~l-------------------c~~L~tllGsg~iFatGV~YG~mALGKKadr~~maaa~dpa~sqq~ 162 (175)
T KOG4085|consen 104 VFYCAMAVVPIVL-------------------CLTLTTLLGSGIIFATGVLYGLMALGKKADRISMAAAQDPAQSQQA 162 (175)
T ss_pred HHHHhhccccchh-------------------hhhHHHHhCcchhhhhHHHHHHHHhcccccHHHHHHhcCcccCccc
Confidence 33444444 3222 2345788899988876554444444333333333334445666543
No 28
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=50.38 E-value=15 Score=30.75 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEccccch
Q 009393 38 PWPEAILLGFQHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTY 110 (535)
Q Consensus 38 p~~~~i~~GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~ 110 (535)
.+++.+++|+.-.+..++..+....+ +|+++ ...+..+.++.++-+++|...-++.||+.+.
T Consensus 15 ~~~~D~~aGltva~~~iPq~~a~A~l----Ag~pp-------~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~ 76 (84)
T PF13792_consen 15 NLRGDLLAGLTVALVAIPQGMAYALL----AGVPP-------IYGLYAAIIPPLIYALFGSSRHMIVGPTAAM 76 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCC-------CeeeHHHHHHHHHHhhccCCCccccChHHHH
Confidence 46899999999887766555555433 78887 4778888999999999988888899996543
No 29
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=46.30 E-value=1.1e+02 Score=33.56 Aligned_cols=75 Identities=9% Similarity=0.118 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcceeEccccchHHHHHHHHHhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 009393 79 IQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVPTTISIILAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSG 158 (535)
Q Consensus 79 i~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~g 158 (535)
+..++++-|++|++-+++| ..|. .+++--.. +...-+.. ..+ .+..+|++.+++|+++
T Consensus 277 l~rgi~~dGi~s~laglfg-~~p~---tt~sqNvG---vi~~TgV~----------SR~-----v~~~aa~ilillgl~P 334 (433)
T PRK11412 277 YRRSFVATGFMTLITVPLA-VIPF---SPFVSSIG---LLTQTGDY----------RRR-----SFIYGSVMCLLVALIP 334 (433)
T ss_pred cccchhhccHHHHHHHhcC-CCCC---Cchhhhhh---hhhhcCCc----------hhH-----HHHHHHHHHHHHHHHH
Confidence 5789999999999999996 5664 22221111 11111110 112 2567888999999988
Q ss_pred hHHHHHHhhCcccHHHH
Q 009393 159 LWRNVARLLSPLAAVPL 175 (535)
Q Consensus 159 l~~~L~~~~Pp~V~G~~ 175 (535)
-+..+...+|..|.|.+
T Consensus 335 K~~alia~IP~pVlGg~ 351 (433)
T PRK11412 335 ALTRLFCSIPLPVSSAV 351 (433)
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 88999999998777665
No 30
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=41.04 E-value=1.6e+02 Score=31.58 Aligned_cols=75 Identities=12% Similarity=0.151 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcceeEccccchHHHHHHHHHhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 009393 79 IQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVPTTISIILAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSG 158 (535)
Q Consensus 79 i~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~g 158 (535)
++..+.+-|++|++-+++| ..|.. ++.--. .+....|.. ..+ ...++|++.+++++++
T Consensus 255 ~~~~l~~~Gi~~i~aglfG-~~p~t---~~~~~~---~~~~~tg~~----------sr~-----~~~~~~~~lil~~l~~ 312 (406)
T TIGR03173 255 LAGGLRADGLGSALGGLFN-TFPYT---SFSQNV---GLVQLTGVK----------SRY-----VVAAAGVILVLLGLFP 312 (406)
T ss_pred ccchHHhccHHHHHHHHhC-CCCCc---chhhhH---HHHHHhCCC----------chH-----hHHHHHHHHHHHHHHH
Confidence 5788999999999999997 57742 221111 111111100 112 2367888888888876
Q ss_pred hHHHHHHhhCcccHHHH
Q 009393 159 LWRNVARLLSPLAAVPL 175 (535)
Q Consensus 159 l~~~L~~~~Pp~V~G~~ 175 (535)
....+...+|..+.|.+
T Consensus 313 ~~~~l~~~iP~~vlgg~ 329 (406)
T TIGR03173 313 KLAALVASIPQPVLGGA 329 (406)
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 67999999998887764
No 31
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=39.37 E-value=4.6e+02 Score=28.40 Aligned_cols=37 Identities=8% Similarity=-0.008 Sum_probs=24.4
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHHHH----hcCCcce
Q 009393 66 PQMGGGNEEKAKMIQTLLFVAGLNTLFQTF----FGTRLPA 102 (535)
Q Consensus 66 ~a~Gl~~~~~~~li~atll~sGi~Tllq~~----~G~rlPi 102 (535)
+..|++..+........++...++.++.+. +|.|..+
T Consensus 64 ~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~ 104 (476)
T PLN00028 64 DNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGS 104 (476)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 348999887766555555566677777764 5666544
No 32
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=38.40 E-value=6.1e+02 Score=28.36 Aligned_cols=130 Identities=18% Similarity=0.123 Sum_probs=66.2
Q ss_pred CCCChHHHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEccccchHHHH
Q 009393 35 SPPPWPEAILLGFQHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVPTT 114 (535)
Q Consensus 35 ~r~p~~~~i~~GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~~~ 114 (535)
.++..+..+..+.-..+.........|++..+..|.++.....+..+.-+.+-+++++...+..|++.-.--..+.+...
T Consensus 216 ~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a 295 (524)
T PF05977_consen 216 SSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFA 295 (524)
T ss_pred cchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHH
Confidence 34556655555554444433334456888777788888766666555555555666666555444332000001111111
Q ss_pred HHHHHhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhCcccHHHHH
Q 009393 115 ISIILAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSGLWRNVARLLSPLAAVPLV 176 (535)
Q Consensus 115 ~~i~~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~gl~~~L~~~~Pp~V~G~~i 176 (535)
+... ..+.. .....++.+.++.|......-. .....+++..|+.+.|=+.
T Consensus 296 ~~~~-~lal~----------~~~~~~~~~l~l~G~~~~~~~~-~~~t~~Q~~~P~~~~GRv~ 345 (524)
T PF05977_consen 296 LALL-LLALS----------PSFWLALIALFLAGAAWIIANS-SLNTLVQLSVPDWVRGRVF 345 (524)
T ss_pred HHHH-HHhcc----------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHhHHH
Confidence 1110 01110 2334455667777776655433 2345677888887766553
No 33
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=27.91 E-value=2.1e+02 Score=30.83 Aligned_cols=76 Identities=20% Similarity=0.318 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcceeEccccchHHHHHHHHHhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 009393 79 IQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVPTTISIILAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSG 158 (535)
Q Consensus 79 i~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~g 158 (535)
++..+++-|++|++-+++| ..|.. + |.- ...+....+.. ..+ +...+|++.+++++++
T Consensus 271 ~~r~l~adGl~~i~aglfG-~~p~t---~--~se-n~g~~~~T~~~----------sr~-----~~~~~a~~~i~~~l~p 328 (415)
T TIGR00801 271 LHRGVLADGLATLLAGLFG-GFPNT---T--FAQ-NIGVIALTRVA----------SRW-----VIVGAAVILIALGFFP 328 (415)
T ss_pred ccchHHHhhHHHHHHHhcC-CCCCc---c--hhh-hheeeeecCCC----------chH-----HHHHHHHHHHHHHHHH
Confidence 4788999999999999997 47652 1 111 01111111100 112 4677888899999886
Q ss_pred hHHHHHHhhCcccHHHHH
Q 009393 159 LWRNVARLLSPLAAVPLV 176 (535)
Q Consensus 159 l~~~L~~~~Pp~V~G~~i 176 (535)
.+..+...+|..|.|...
T Consensus 329 k~~~l~~~iP~~vlgg~~ 346 (415)
T TIGR00801 329 KIAALITSIPSPVLGGAS 346 (415)
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 679999999987776653
No 34
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=27.40 E-value=1.7e+02 Score=29.91 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=32.1
Q ss_pred hhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccchhcccCC
Q 009393 383 LGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLN 423 (535)
Q Consensus 383 ~Pk~~al~~~IP~~Vlggvliv~fg~i~~~Gi~~l~~v~~~ 423 (535)
.+.+.+++..||.-++.|.-+. -+++=..|+-++.|.-++
T Consensus 163 ~~~v~~il~~iP~~v~~Gl~va-ggmLPAvGfAmLl~~m~~ 202 (265)
T TIGR00822 163 QSAVQAMLKAIPEVVTHGLQIA-GGIIVVVGYAMVLRMMFK 202 (265)
T ss_pred HHHHHHHHHHCHHHHHHHHHHH-HhhHHHHHHHHHHHHHhh
Confidence 4678899999999999888865 688888888888776664
No 35
>PRK10489 enterobactin exporter EntS; Provisional
Probab=25.35 E-value=6.9e+02 Score=26.06 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=30.1
Q ss_pred CChHHHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 009393 37 PPWPEAILLGFQHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTFF 96 (535)
Q Consensus 37 ~p~~~~i~~GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~~ 96 (535)
+..+..++.++...... ......|..+.+..|++..+...+.....+...+++++..++
T Consensus 224 ~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l 282 (417)
T PRK10489 224 PVVGGIALLGGLLTMAS-AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWL 282 (417)
T ss_pred hHHHHHHHHHHHHHHHH-hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444333221 122345766666578887665554444444455556655554
No 36
>PRK10720 uracil transporter; Provisional
Probab=25.08 E-value=3.4e+02 Score=29.48 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcceeEccccchHHHHHHHHHhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 009393 79 IQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVPTTISIILAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSG 158 (535)
Q Consensus 79 i~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~g 158 (535)
++..+++-|++|++-+++| ..|..- ++--. .+.+.-+.. ..+ ...+++++.+++++++
T Consensus 262 ~~r~l~adGlatii~glfG-~~p~tt---y~en~---g~ia~T~v~----------sr~-----v~~~a~~~li~lg~~p 319 (428)
T PRK10720 262 LHRSMFANGLSTVISGFFG-STPNTT---YGENI---GVMAITRVY----------STW-----VIGGAAIIAILLSCVG 319 (428)
T ss_pred ccchHhhhhHHHHHHHhcC-CCCccc---ccccc---ceeeecccc----------hhH-----HHHHHHHHHHHHHHHH
Confidence 4788899999999999986 456421 11000 000000000 111 1345888999999987
Q ss_pred hHHHHHHhhCcccHHHHH
Q 009393 159 LWRNVARLLSPLAAVPLV 176 (535)
Q Consensus 159 l~~~L~~~~Pp~V~G~~i 176 (535)
-+..+...+|..|.|.+.
T Consensus 320 k~~a~ia~iP~pVlgg~~ 337 (428)
T PRK10720 320 KLAAAIQAIPLPVMGGVS 337 (428)
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 789999999987776653
No 37
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=22.09 E-value=5e+02 Score=27.61 Aligned_cols=81 Identities=27% Similarity=0.383 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcceeEccccchHHHHHHHHHhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 009393 79 IQTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVPTTISIILAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSG 158 (535)
Q Consensus 79 i~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~g 158 (535)
+..++.+-|++|++-+++|. .|.. +|.-.. ......+. .+-+ ..+.++++.+++++..
T Consensus 269 ~~r~l~~dg~~~~l~gl~G~-~~~t-----~~~en~-g~i~~t~v-----------~Sr~----~~~~a~~~~i~~~~~p 326 (389)
T PF00860_consen 269 IRRGLLADGLGTILAGLFGT-SPTT-----TYSENA-GGIAATGV-----------ASRR----VGLTAGVILILFGLSP 326 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHT----EE-----E-HHHH-HHHHHHTB-------------HH----HHHHHHHHHHHHT--H
T ss_pred hcccceeeeeeeeechhhcC-CCCc-----cccccc-hhhhhhcc-----------ccce----eeeHHHHHHHHHhhHH
Confidence 58999999999999999976 6552 222211 11111111 0111 3567788888999887
Q ss_pred hHHHHHHhhCcccH-HHHHHHHHh
Q 009393 159 LWRNVARLLSPLAA-VPLVALSGF 181 (535)
Q Consensus 159 l~~~L~~~~Pp~V~-G~~i~lIGl 181 (535)
.+..+...+|..|+ |..+.+.|.
T Consensus 327 ~~~~l~~~IP~~v~gg~~lv~~g~ 350 (389)
T PF00860_consen 327 KFAPLFASIPSPVIGGPLLVLFGM 350 (389)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHH
Confidence 78899999998774 555555554
No 38
>COG4129 Predicted membrane protein [Function unknown]
Probab=21.48 E-value=9.7e+02 Score=25.25 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCcceeEccccchHHHHHHHHHhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 009393 80 QTLLFVAGLNTLFQTFFGTRLPAVIGGSYTYVPTTISIILAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFSGL 159 (535)
Q Consensus 80 ~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~gl 159 (535)
..|.++++++.++--++|+..| .|+.+...+.+-.+ ...+...+++-++|.++-+++-.+.+.+.+
T Consensus 14 lKt~ia~~La~~ia~~l~~~~~-----~~A~i~AV~~l~~t--------~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g- 79 (332)
T COG4129 14 LKTGLAAGLALLIAHLLGLPQP-----AFAGISAVLCLSPT--------IKRSLKRALQRLLGNALGAILAVLFFLLFG- 79 (332)
T ss_pred HHHHHHHHHHHHHHHHhCCCch-----HHHHHHHhhcccCc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 4566778888888667766654 34555433322111 124455667777776665555444444332
Q ss_pred HHHHHHhhCcccHHHHHHH
Q 009393 160 WRNVARLLSPLAAVPLVAL 178 (535)
Q Consensus 160 ~~~L~~~~Pp~V~G~~i~l 178 (535)
..|...|.+++.
T Consensus 80 -------~~~~~~~v~~~i 91 (332)
T COG4129 80 -------QNPIAFGVVLLI 91 (332)
T ss_pred -------ccHHHHHHHHHH
Confidence 335555555443
No 39
>COG4413 Utp Urea transporter [Amino acid transport and metabolism]
Probab=20.98 E-value=1.6e+02 Score=30.02 Aligned_cols=90 Identities=14% Similarity=0.215 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHHHHHHhhccchhcccCCCCcceEeehhhHHhhcchhHHhhhhhhccCCCCccccccccccccccccc
Q 009393 394 PAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRTKFILGFSFFMGLSIPQYFNEYTAVNGYGPVHTGARWFNDMINVPFS 473 (535)
Q Consensus 394 P~~Vlggvliv~fg~i~~~Gi~~l~~v~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~ 473 (535)
+.+++|+++-+.++...-...+.+++--+. -| .+++|..+|.+++.- |. +-
T Consensus 45 ~aa~~Gsvl~~~vAr~i~~s~~s~~~GlyG--yN------~vLvg~al~~fla~s----------------p~-----l~ 95 (319)
T COG4413 45 AAAALGSVLGPLVARLIHCSDSSIRAGLYG--YN------GVLVGAALPFFLAWS----------------PG-----LW 95 (319)
T ss_pred HHHHHHhHHHHHHHHHHHhhHhHHHhcccc--cc------HHHHHHHHHHHhcCC----------------cc-----ee
Confidence 667788888777666655444433321111 13 345566667666541 22 22
Q ss_pred chhHHHHHHHHHHHhhcCCCCchhhhcccccccccccccCCCCCcCccccCCcccccCC
Q 009393 474 SEPFVAGLLAYVLDVTLHKKDNATRKDRGMHWWDRFRSFKTDTRSEEFYSLPFNLNKFF 532 (535)
Q Consensus 474 sgi~~g~l~ailLn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 532 (535)
+=+++|+++.+.+...+.+- +|.| +.+-|++||.++-||
T Consensus 96 ~i~vlg~lvSv~v~aav~~i---------lr~~-----------kvp~lT~pFVlttWf 134 (319)
T COG4413 96 SIVVLGCLVSVAVQAAVLHI---------LRTW-----------KVPALTLPFVLTTWF 134 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHH---------hhhc-----------cCcccccchHHHHHH
Confidence 45677888888777766532 1222 234588888887664
No 40
>PF13142 DUF3960: Domain of unknown function (DUF3960)
Probab=20.03 E-value=55 Score=26.94 Aligned_cols=25 Identities=12% Similarity=0.342 Sum_probs=20.4
Q ss_pred HHHHhhcCCCCchhhhccccccccc
Q 009393 484 YVLDVTLHKKDNATRKDRGMHWWDR 508 (535)
Q Consensus 484 ilLn~~~~~~~~~~~~~~~~~~~~~ 508 (535)
=+..+++|-+++.+.|||.+..|++
T Consensus 23 ~l~~llvp~~pkg~~KerTIl~w~~ 47 (87)
T PF13142_consen 23 DLFSLLVPCEPKGEDKERTILMWKE 47 (87)
T ss_pred HHHHHhcCCCCCCCCceeEEeeech
Confidence 4566888877777789999999988
Done!