Query 009393
Match_columns 535
No_of_seqs 204 out of 1726
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 04:11:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 5.7E-71 2E-75 588.9 30.5 395 27-497 2-413 (429)
2 3qe7_A Uracil permease; uracil 58.0 25 0.00086 36.7 8.3 77 327-404 44-131 (429)
3 1pw4_A Glycerol-3-phosphate tr 28.2 2.9E+02 0.01 27.0 10.5 38 58-95 273-310 (451)
4 3o7q_A L-fucose-proton symport 27.2 1.8E+02 0.0061 28.6 8.6 101 60-174 49-153 (438)
5 1cn3_F Fragment of coat protei 19.9 47 0.0016 20.4 1.4 11 3-13 4-14 (29)
6 3hd6_A Ammonium transporter RH 19.5 61 0.0021 34.5 3.2 40 474-513 409-448 (490)
7 3o7q_A L-fucose-proton symport 11.0 3.1E+02 0.011 26.8 5.9 60 36-95 257-317 (438)
8 1bts_A BAND 3 anion transport 9.8 79 0.0027 19.6 0.5 23 326-348 3-25 (26)
9 2gfp_A EMRD, multidrug resista 9.7 1.1E+03 0.036 22.2 9.2 43 60-103 23-69 (375)
10 1pw4_A Glycerol-3-phosphate tr 9.6 2.9E+02 0.01 27.1 5.0 55 39-95 27-84 (451)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=5.7e-71 Score=588.92 Aligned_cols=395 Identities=23% Similarity=0.365 Sum_probs=350.5
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHh-cCCcceeEc
Q 009393 27 PSIAYCITSPPPWPEAILLGFQHYLVMLGTTVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTFF-GTRLPAVIG 105 (535)
Q Consensus 27 ~~~~~~~~~r~p~~~~i~~GlQh~l~m~~~~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~~-G~rlPiv~G 105 (535)
.|+.|++|||+|+++++++|+||+++|+++++++|+++ |+|+ +++++++|++|++|+++ |+|+|+++|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~GlQh~lam~~~~v~~Plil----Gl~~-------~~~l~~agi~Tllq~~~~~~~lP~~~G 70 (429)
T 3qe7_A 2 TRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HINP-------ATVLLFNGIGTLLYLFICKGKIPAYLG 70 (429)
T ss_dssp --CCBCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT----TSCH-------HHHHHHHHHHHHHHHHHTTTCCCCCEE
T ss_pred CCcccCcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHh----CCCH-------HHHHHHHHHHHHHHHHHcCCCCCeEec
Confidence 46789999999999999999999999999999999996 7887 37999999999999987 899999999
Q ss_pred cccchHHHHHHHHHhcccCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhh--hhH-HHHHHhhCcccHHHHHHHHHhH
Q 009393 106 GSYTYVPTTISIILAGRYSNIVDPQEKFERIMRGTQGALIVASTLQIVLGFS--GLW-RNVARLLSPLAAVPLVALSGFG 182 (535)
Q Consensus 106 psfa~v~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ga~lvaGvi~illg~~--gl~-~~L~~~~Pp~V~G~~i~lIGl~ 182 (535)
+||+|++++..+.. ++|++++|+++++|+++++++++ +++ +|++|+|||+|+|.++++||++
T Consensus 71 ~sfafi~~~~~i~~---------------~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~ 135 (429)
T 3qe7_A 71 SSFAFISPVLLLLP---------------LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLE 135 (429)
T ss_dssp ECGGGHHHHHHHGG---------------GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh---------------cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHH
Confidence 99999998776643 26999999999999999999987 554 7999999999999999999999
Q ss_pred hhhhhcCCcc-----------hhhhhHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHhhcCCCCCC
Q 009393 183 LYEFGFPGVA-----------KCVEIGLPQIIFLIIFSQYIPHLVRGERHVFDRFAVIFSVAIVWVYAHLLTVGGAYKNT 251 (535)
Q Consensus 183 l~~~~~~~~~-----------~~~~v~l~~l~l~i~l~~~~~~v~~~~~~~~~~~aiLigivvG~~~a~~lg~~~~~~~~ 251 (535)
+.+.++++.+ .++.+++.+++++++++++.|+ ++|++++|+|+++||++++.+|..
T Consensus 136 l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~kg-------~~~~~aiLigivvg~~~a~~~G~~------ 202 (429)
T 3qe7_A 136 LAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRG-------FLAIIPILIGVLVGYALSFAMGIV------ 202 (429)
T ss_dssp HHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSST-------TTTTHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhcc-------cchhhHHHHHHHHHHHHHHHhcCC------
Confidence 9988765432 2567888999888888766554 578999999999999999999853
Q ss_pred CCCCccccccCcCCccCCCCcccccccccccCCccCHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCccchh
Q 009393 252 GPKTQLSCRTDRAGIIGAAPWIRVPYPFQWGAPSFDAGESFAMMAASFVALVESTGAFIAVSRYASATPLPPSILSRGIG 331 (535)
Q Consensus 252 ~~~~~~~~~~d~~~~v~~ap~~~lP~~~~~g~p~f~~~~i~~~~~~~lv~~~esiG~~~av~~~~~~~~~~~~~~~r~l~ 331 (535)
|++. +.++||+++|. |+.|+||+..+..++++++++++|++|++.++++.++++.+++++.||+++
T Consensus 203 ----------d~~~-v~~a~~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~ 268 (429)
T 3qe7_A 203 ----------DTTP-IINAHWFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMF 268 (429)
T ss_dssp ----------TSSH-HHHSCSSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHH
T ss_pred ----------Cccc-ccccccccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHH
Confidence 4443 56789999994 567899999999999999999999999999999999866556789999999
Q ss_pred hhhhHHHHhhhcCCCCCccccccchhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 009393 332 WQGVGILISGMFGTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALYCLFFAYVGA 411 (535)
Q Consensus 332 adGl~tilaglfG~~p~tt~s~en~g~i~~Tgv~Sr~~~~~a~~~li~l~f~Pk~~al~~~IP~~Vlggvliv~fg~i~~ 411 (535)
+||++|+++|+||++|.|+|+ ||+|+++.||++||++..++|+++++++++||++++++.||.+|+||+++++||++..
T Consensus 269 adGla~i~~glfGg~p~Tt~~-en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~ 347 (429)
T 3qe7_A 269 ANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGA 347 (429)
T ss_dssp HHHHHHHHHHHHTCCCEEECH-HHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcchHH-HhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccch--hcccCCCCcceEeehhhHHhhcchhHHhhhhhhccCCCCcccccccccccccccccchhHHHHHHHHHHHhh
Q 009393 412 GGLSFL--QFCNLNSFRTKFILGFSFFMGLSIPQYFNEYTAVNGYGPVHTGARWFNDMINVPFSSEPFVAGLLAYVLDVT 489 (535)
Q Consensus 412 ~Gi~~l--~~v~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g~l~ailLn~~ 489 (535)
+|+|++ +++|++++||.+|+++++.+|++... +| ++.+..||+.+|+++|++||++
T Consensus 348 ~Gi~~l~~~~v~~~~~rn~~i~~~~l~~G~g~~~--------------------~~--~~~~~~~gi~~~~~~ai~ln~~ 405 (429)
T 3qe7_A 348 SGIRVLIESKVDYNKAQNLILTSVILIIGVSGAK--------------------VN--IGAAELKGMALATIVGIGLSLI 405 (429)
T ss_dssp HHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHCCC--------------------CC--SSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHH--------------------Hh--hhhhccCcHHHHHHHHHHHHHH
Confidence 999999 89999888999999999999997421 22 3567899999999999999999
Q ss_pred cCCCCchh
Q 009393 490 LHKKDNAT 497 (535)
Q Consensus 490 ~~~~~~~~ 497 (535)
+|++++.+
T Consensus 406 l~~~~~~~ 413 (429)
T 3qe7_A 406 FKLISVLR 413 (429)
T ss_dssp HTCCC---
T ss_pred hcCccccC
Confidence 99874443
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=58.04 E-value=25 Score=36.73 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=47.3
Q ss_pred ccchhhhhhHHHHhhhcCCCCCccccccchhh----hhhccCCch----hHHHHHHHHHHHHHHh-hHH--HHHHHhCCh
Q 009393 327 SRGIGWQGVGILISGMFGTGNGSSVSVENAGL----LALTRVGSR----RVVQISAGFMIFFSIL-GKF--GAVFASIPA 395 (535)
Q Consensus 327 ~r~l~adGl~tilaglfG~~p~tt~s~en~g~----i~~Tgv~Sr----~~~~~a~~~li~l~f~-Pk~--~al~~~IP~ 395 (535)
+.++++.|++|++=++++..+.-.+.+.|-.. ....+ .+. -+.+.+|++.++++++ .|+ ..+...+|.
T Consensus 44 ~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~-~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~Pp 122 (429)
T 3qe7_A 44 ATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP-LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPP 122 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCC
Confidence 36899999999998887554432223233332 11222 221 1235677777777765 233 378999999
Q ss_pred HHHHHHHHH
Q 009393 396 PIVAALYCL 404 (535)
Q Consensus 396 ~Vlggvliv 404 (535)
.|+|.+...
T Consensus 123 vviG~~i~~ 131 (429)
T 3qe7_A 123 AAMGAIVAV 131 (429)
T ss_dssp HHHHHHHHH
T ss_pred eeeHHHHHH
Confidence 888887654
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=28.20 E-value=2.9e+02 Score=27.04 Aligned_cols=38 Identities=13% Similarity=-0.053 Sum_probs=25.3
Q ss_pred ehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 009393 58 VLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTF 95 (535)
Q Consensus 58 i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~ 95 (535)
...|..+.+..|.+..+...+.....+...++.++-+.
T Consensus 273 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (451)
T 1pw4_A 273 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 310 (451)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577776667899887766665555666666666654
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=27.22 E-value=1.8e+02 Score=28.60 Aligned_cols=101 Identities=9% Similarity=-0.114 Sum_probs=55.6
Q ss_pred hhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH----hcCCcceeEccccchHHHHHHHHHhcccCCCCCChhhhhh
Q 009393 60 IPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTF----FGTRLPAVIGGSYTYVPTTISIILAGRYSNIVDPQEKFER 135 (535)
Q Consensus 60 ~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~----~G~rlPiv~Gpsfa~v~~~~~i~~~~g~~~~~~~~~~~~~ 135 (535)
.|.+ .+..|++..+...+.+...+...++.++.+. +|.|..++.+.....+.......... ..
T Consensus 49 ~~~~-~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------------~~ 115 (438)
T 3o7q_A 49 LPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE------------IM 115 (438)
T ss_dssp HHHH-HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH------------TT
T ss_pred HHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc------------cc
Confidence 4554 3448999998888888888888888888775 45555544443222222111100010 02
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhCcccHHH
Q 009393 136 IMRGTQGALIVASTLQIVLGFSGLWRNVARLLSPLAAVP 174 (535)
Q Consensus 136 ~~~~~~ga~lvaGvi~illg~~gl~~~L~~~~Pp~V~G~ 174 (535)
++...+.+.++.|+..-..... ....+.+.+|+.-.+.
T Consensus 116 ~~~~l~~~~~l~G~~~~~~~~~-~~~~~~~~~~~~~r~~ 153 (438)
T 3o7q_A 116 NYTLFLVGLFIIAAGLGCLETA-ANPFVTVLGPESSGHF 153 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSCSTTHHH
T ss_pred cHHHHHHHHHHHHhhHHHhhhh-HHHHHHHHcCchhHHH
Confidence 3455555666666655433322 2356677888754443
No 5
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=19.91 E-value=47 Score=20.42 Aligned_cols=11 Identities=55% Similarity=1.159 Sum_probs=5.6
Q ss_pred CCCCCCCCCCC
Q 009393 3 GGGGGLAPQPK 13 (535)
Q Consensus 3 ~~~~~~~~~~~ 13 (535)
|||||-++..|
T Consensus 4 gggggaashqr 14 (29)
T 1cn3_F 4 GGGGGAASHQR 14 (29)
T ss_dssp CCCSTTTCCCC
T ss_pred CCCCccccccc
Confidence 45555555433
No 6
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=19.47 E-value=61 Score=34.48 Aligned_cols=40 Identities=5% Similarity=0.085 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHHHhhcCCCCchhhhcccccccccccccC
Q 009393 474 SEPFVAGLLAYVLDVTLHKKDNATRKDRGMHWWDRFRSFK 513 (535)
Q Consensus 474 sgi~~g~l~ailLn~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (535)
-.++.+.++..+||.....+..+++|.+|++-|.-+++.+
T Consensus 409 ~a~v~~~ii~~iLk~~~~lRvs~e~e~~g~d~we~p~~~~ 448 (490)
T 3hd6_A 409 MALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEMPEGNS 448 (490)
T ss_dssp HHHHHHHHHHHHHTSTTSCCCCTTSTTCGGGTSCCCTTTC
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHhCCCceeecCcccc
Confidence 3567778888888888766655556777888887655533
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=11.02 E-value=3.1e+02 Score=26.76 Aligned_cols=60 Identities=12% Similarity=-0.008 Sum_probs=32.0
Q ss_pred CCChHHHHHHHHHHHHHhhceeehhhHH-hhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 009393 36 PPPWPEAILLGFQHYLVMLGTTVLIPTH-LVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTF 95 (535)
Q Consensus 36 r~p~~~~i~~GlQh~l~m~~~~i~~P~i-l~~a~Gl~~~~~~~li~atll~sGi~Tllq~~ 95 (535)
++..+..++..+-............|.. +.+..|.+..+...+.....++..++.++-++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333333332222344666 66656999887766655555555666666554
No 8
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=9.79 E-value=79 Score=19.60 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=17.0
Q ss_pred CccchhhhhhHHHHhhhcCCCCC
Q 009393 326 LSRGIGWQGVGILISGMFGTGNG 348 (535)
Q Consensus 326 ~~r~l~adGl~tilaglfG~~p~ 348 (535)
.++.+++++++.++=++|++-|.
T Consensus 3 v~E~i~s~ai~Gi~f~lf~gQPL 25 (26)
T 1bts_A 3 VSELLISTAVQGILFALLGAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---
T ss_pred hhHHHHHHHHHHHHHHHHhcccC
Confidence 45678899999999999988774
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=9.73 E-value=1.1e+03 Score=22.23 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=29.7
Q ss_pred hhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH----hcCCccee
Q 009393 60 IPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTF----FGTRLPAV 103 (535)
Q Consensus 60 ~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~----~G~rlPiv 103 (535)
.|.+. +..|.+.++...+.+...+...++.++-+. +|.|..+.
T Consensus 23 ~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 69 (375)
T 2gfp_A 23 IADMA-RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVIL 69 (375)
T ss_dssp HHHHH-TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCH
T ss_pred hHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence 35443 347999988888777777778888887776 45555443
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=9.60 E-value=2.9e+02 Score=27.07 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHhhce---eehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 009393 39 WPEAILLGFQHYLVMLGT---TVLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTF 95 (535)
Q Consensus 39 ~~~~i~~GlQh~l~m~~~---~i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~ 95 (535)
++..+...+.+++..+.. ....|.+..+ . .+..+...+.+...+...++.++-+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~ 84 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGS 84 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHH
Confidence 444455555555444321 2234555444 5 78777777777777777888877775
Done!