Query 009393
Match_columns 535
No_of_seqs 204 out of 1726
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 04:11:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009393.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009393hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 15.0 70 0.0051 29.0 4.8 36 58-95 46-81 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 7.7 6.2E+02 0.045 21.7 10.3 37 60-96 272-308 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 6.1 1.6E+02 0.012 25.3 3.5 43 61-103 31-77 (417)
4 d2axta1 f.26.1.1 (A:10-344) Ph 4.2 1.9E+02 0.014 26.5 2.4 38 468-505 193-230 (335)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 3.2 4E+02 0.029 15.1 2.4 15 226-240 12-26 (32)
6 d1pv7a_ f.38.1.2 (A:) Lactose 2.6 1.3E+03 0.092 18.6 7.6 37 138-175 313-349 (417)
7 d1ogad2 b.1.1.2 (D:118-202) T- 1.8 5.2E+02 0.038 18.6 2.0 32 499-534 52-84 (85)
8 d3cx5c1 f.32.1.1 (C:262-385) M 1.8 1.2E+03 0.086 17.3 4.5 41 386-427 17-57 (124)
9 d1rh5b_ f.23.28.1 (B:) Preprot 1.6 9E+02 0.065 15.9 2.8 18 80-97 24-41 (56)
10 d1xrda1 f.3.1.1 (A:1-52) Light 1.5 9.3E+02 0.068 15.5 2.6 17 367-383 11-27 (52)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=15.03 E-value=70 Score=29.01 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=28.1
Q ss_pred ehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 009393 58 VLIPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTF 95 (535)
Q Consensus 58 i~~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~ 95 (535)
++.|.+ .+ .|++..|...+.+...+..++++++-+.
T Consensus 46 ~~~p~~-~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~ 81 (447)
T d1pw4a_ 46 LAMPYL-VE-QGFSRGDLGFALSGISIAYGFSKFIMGS 81 (447)
T ss_dssp HHHHHT-TS-STTCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HH-hCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345655 33 7999999988888888888898888876
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=7.66 E-value=6.2e+02 Score=21.75 Aligned_cols=37 Identities=14% Similarity=-0.007 Sum_probs=27.0
Q ss_pred hhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 009393 60 IPTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTFF 96 (535)
Q Consensus 60 ~P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~~ 96 (535)
.|..+.+..+.+.++.........+...+++++.+++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 308 (447)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccchhhhhhhcchhhhhhhhhhhhhh
Confidence 4666666678898877777777777777777777654
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=6.11 E-value=1.6e+02 Score=25.34 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=32.5
Q ss_pred hHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH----hcCCccee
Q 009393 61 PTHLVPQMGGGNEEKAKMIQTLLFVAGLNTLFQTF----FGTRLPAV 103 (535)
Q Consensus 61 P~il~~a~Gl~~~~~~~li~atll~sGi~Tllq~~----~G~rlPiv 103 (535)
|..+.+..|+++.|...+.+...+...++.++-+. +|.|..++
T Consensus 31 ~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~ 77 (417)
T d1pv7a_ 31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL 77 (417)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 55456668999999888888888888888888875 56665543
No 4
>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.21 E-value=1.9e+02 Score=26.54 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=25.8
Q ss_pred ccccccchhHHHHHHHHHHHhhcCCCCchhhhcccccc
Q 009393 468 INVPFSSEPFVAGLLAYVLDVTLHKKDNATRKDRGMHW 505 (535)
Q Consensus 468 ~~~~l~sgi~~g~l~ailLn~~~~~~~~~~~~~~~~~~ 505 (535)
+.-++++.+..+.=-+.+++.++|++.+.+..+++.+-
T Consensus 193 Ia~~fG~aLl~AMHGatVls~l~~e~~e~~s~~~~~~f 230 (335)
T d2axta1 193 VAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKF 230 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTBBCCSCSSSCSGGGCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcCCCcCCcccCCCC
Confidence 34556778888888899999999876444334444433
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.19 E-value=4e+02 Score=15.12 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHH
Q 009393 226 FAVIFSVAIVWVYAH 240 (535)
Q Consensus 226 ~aiLigivvG~~~a~ 240 (535)
.+.+.|+.+|.++++
T Consensus 12 ialffgiavgiifai 26 (32)
T d2e74e1 12 IALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheeeE
Confidence 355667777776553
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=2.60 E-value=1.3e+03 Score=18.65 Aligned_cols=37 Identities=3% Similarity=-0.149 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhhCcccHHHH
Q 009393 138 RGTQGALIVASTLQIVLGFSGLWRNVARLLSPLAAVPL 175 (535)
Q Consensus 138 ~~~~ga~lvaGvi~illg~~gl~~~L~~~~Pp~V~G~~ 175 (535)
.......++.|+..-..... ....+.+.+|+...|..
T Consensus 313 ~~~~~~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~~~~ 349 (417)
T d1pv7a_ 313 LEVVILKTLHMFEVPFLLVG-CFKYITSQFEVRFSATI 349 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCGGGHHHH
T ss_pred chhhHHHHHHHHHHHHHHHH-HHHHHHHHCCHhHHHHH
Confidence 33444444555444333222 23667788888776654
No 7
>d1ogad2 b.1.1.2 (D:118-202) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}
Probab=1.82 E-value=5.2e+02 Score=18.58 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=21.7
Q ss_pred hcccccccccccccC-CCCCcCccccCCcccccCCCC
Q 009393 499 KDRGMHWWDRFRSFK-TDTRSEEFYSLPFNLNKFFPS 534 (535)
Q Consensus 499 ~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~ 534 (535)
|.-|.-+|+...+|. .+...+++|.. +.+|||
T Consensus 52 KSngavaWsn~sdf~C~~~F~~~~y~~----snf~~~ 84 (85)
T d1ogad2 52 KSNSAVAWSNKSDFACANAFNNSIIPE----DTFFPS 84 (85)
T ss_dssp EEEEEEEEESCSSCCTTTTTTTSCCCT----TCBCCC
T ss_pred cccceEEecCcCCchhHHHhccccccc----cccccC
Confidence 455667798876654 67777777764 556665
No 8
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=1.81 E-value=1.2e+03 Score=17.33 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=21.9
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHhhccchhcccCCCCcc
Q 009393 386 FGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRT 427 (535)
Q Consensus 386 ~~al~~~IP~~Vlggvliv~fg~i~~~Gi~~l~~v~~~~~rn 427 (535)
+-+++-+||.-. ||++....+.+...-+-.+++.+..+.|.
T Consensus 17 ~YaiLRsiP~k~-~Gvl~~~~si~il~~lP~l~~s~~~s~~~ 57 (124)
T d3cx5c1 17 FYAILRSIPDKL-LGVITMFAAILVLLVLPFTDRSVVRGNTF 57 (124)
T ss_dssp HHHHHHTSSSHH-HHHHHHHHHHHGGGGHHHHCCCSSSSSTT
T ss_pred HHHHHhcCCcch-hhhHHHHHHHHHHHHHHHHhhhhhhhcch
Confidence 456889999884 55554444444443333444444433333
No 9
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=1.59 E-value=9e+02 Score=15.86 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 009393 80 QTLLFVAGLNTLFQTFFG 97 (535)
Q Consensus 80 ~atll~sGi~Tllq~~~G 97 (535)
..+..++|++-++++++|
T Consensus 24 ~~ia~v~~iG~~i~G~IG 41 (56)
T d1rh5b_ 24 LAVAKVTALGISLLGIIG 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456678888888888765
No 10
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=1.52 E-value=9.3e+02 Score=15.55 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHh
Q 009393 367 RRVVQISAGFMIFFSIL 383 (535)
Q Consensus 367 r~~~~~a~~~li~l~f~ 383 (535)
|++.+.-++||.++++.
T Consensus 11 Rr~lva~~~fL~~LAl~ 27 (52)
T d1xrda1 11 RQALVGLATFLFVLALL 27 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666666655543
Done!