BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009394
(535 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
Length = 487
Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 162/418 (38%), Positives = 237/418 (56%), Gaps = 25/418 (5%)
Query: 90 HPNPLQDNPSYSVVKQHFVDVDDSVAQNIVVHQDSPRGRHFRRVGP--------REKVYF 141
+PNP + S + F D D + N +D P + V P R +++F
Sbjct: 39 YPNPSKKYSS----RTEFRDKTDYIMYN-PRPRDEPSSENPVSVSPLLCELAAARSRIHF 93
Query: 142 ESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNT---IPL 198
+ IVTCGG+CPGLN VIR I +Y V +V+G GY G + + I L
Sbjct: 94 NPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIEL 153
Query: 199 TPKIVNGIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIR 258
V IH GGTILG+SRG D ++VD+++ G+N ++ +GGDGTQ+GA I +E +
Sbjct: 154 HRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAK 213
Query: 259 RRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMG 318
RRG+ ++V G+PKTIDND+ ++FGF TAVE+A +AI AA+ EA S G+GVVKLMG
Sbjct: 214 RRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMG 273
Query: 319 RYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQE 378
R SGFIA A +AS + CL+PE+P + + +E+R + VI++AEG GQ+
Sbjct: 274 RDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFCHSRSCVIIVAEGFGQD 330
Query: 379 LLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHF--GKKRKMTINLKYIDPTYMIRAVP 436
DASGNK L D+G+ +++K++ K R +KYIDP+YMIRA P
Sbjct: 331 W----GRGSGGYDASGNKKLIDIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACP 386
Query: 437 SNASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPFYRITERQNRVVITDRMW 494
+A+D ++C LA A+H AMAG TG + + + +P T + + + ++W
Sbjct: 387 PSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLW 444
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|B Chain B, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|C Chain C, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|D Chain D, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|E Chain E, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|F Chain F, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|G Chain G, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|H Chain H, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
Length = 319
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 120/232 (51%), Gaps = 17/232 (7%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKR 209
++T GG PG+N IR +V Y +GV +V G+ GY G A N L V I R
Sbjct: 6 VLTSGGDSPGMNAAIRSVVRKAIY-HGV-EVYGVYHGYAGLIAGNIKKLEVGDVGDIIHR 63
Query: 210 GGTILGTSR-----GGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKV 264
GGTIL T+R K ++ ++ GI + V+GGDG+ +GA + E
Sbjct: 64 GGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEH------GF 117
Query: 265 AVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFI 324
G+P TIDNDIP D + GFDTA+ AI A S E V+++MGR++G I
Sbjct: 118 PCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHER-TWVIEVMGRHAGDI 176
Query: 325 AMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAG 376
A+Y+ +A + LIPE+ + + + +R K+ H +I++AEG G
Sbjct: 177 ALYSGLAG-GAETILIPEADYDMNDVIARLKRGHERGKK--HSIIIVAEGVG 225
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control
pdb|4PFK|A Chain A, Phosphofructokinase. Structure And Control
Length = 319
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 120/232 (51%), Gaps = 17/232 (7%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKR 209
++T GG PG+N IR +V Y +GV +V G+ GY G A N L V I R
Sbjct: 6 VLTSGGDSPGMNAAIRSVVRKAIY-HGV-EVYGVYHGYAGLIAGNIKKLEVGDVGDIIHR 63
Query: 210 GGTILGTSR-----GGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKV 264
GGTIL T+R K ++ ++ GI + V+GGDG+ +GA + E
Sbjct: 64 GGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEH------GF 117
Query: 265 AVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFI 324
G+P TIDNDIP D + GFDTA+ AI A S E V+++MGR++G I
Sbjct: 118 PCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGRHAGDI 176
Query: 325 AMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAG 376
A+++ +A + LIPE+ + + + +R K+ H +I++AEG G
Sbjct: 177 ALWSGLAG-GAETILIPEADYDMNDVIARLKRGHERGKK--HSIIIVAEGVG 225
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|3U39|A Chain A, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|B Chain B, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|C Chain C, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|D Chain D, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
Length = 319
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 120/232 (51%), Gaps = 17/232 (7%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKR 209
++T GG PG+N IR +V Y +GV +V G+ GY G A N L V I R
Sbjct: 6 VLTSGGDSPGMNAAIRSVVRKAIY-HGV-EVYGVYHGYAGLIAGNIKKLEVGDVGDIIHR 63
Query: 210 GGTILGTSR-----GGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKV 264
GGTIL T+R K ++ ++ GI + V+GGDG+ +GA + E
Sbjct: 64 GGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEH------GF 117
Query: 265 AVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFI 324
G+P TIDNDIP D + GFDTA+ AI A S E V+++MGR++G I
Sbjct: 118 PCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGRHAGDI 176
Query: 325 AMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAG 376
A+++ +A + LIPE+ + + + +R K+ H +I++AEG G
Sbjct: 177 ALWSGLAG-GAETILIPEADYDMNDVIARLKRGHERGKK--HSIIIVAEGVG 225
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
Lactobacillus Delbrueckii
Length = 319
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 147/332 (44%), Gaps = 57/332 (17%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKR 209
I+T GG PG+N +R V + G+ +V GI G+ G A + PL + V +
Sbjct: 6 ILTSGGDAPGMNAAVRA-VTRVAIANGL-EVFGIRYGFAGLVAGDIFPLESEDVAHLINV 63
Query: 210 GGTILGTSR---GGHDTSKI--VDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKV 264
GT L ++R + ++ ++ ++ GI+ V V+GGDG+ GA ++ R G
Sbjct: 64 SGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGAL----QLTRHGFNS 119
Query: 265 AVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFI 324
G+P TIDNDIP D + G+DTA A AI A S + +V +MGR G I
Sbjct: 120 I--GLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASSHHR-VFIVNVMGRNCGDI 176
Query: 325 AMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLK---ENG--HMVIVIAEGAGQEL 379
AM +A D +IPE P+ + E I RLK E+G H ++V+AEG
Sbjct: 177 AMRVGVAC-GADAIVIPERPYDV-------EEIANRLKQAQESGKDHGLVVVAEG----- 223
Query: 380 LSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNA 439
+ T DQ A K+ +++ +M R
Sbjct: 224 ----VMTADQFMAE---------------------LKKYGDFDVRANVLGHMQRGGTPTV 258
Query: 440 SDNVYCTLLAHSAIHGAMAGYTGFTVGPVNGR 471
SD V + L A+H + G G VG NG+
Sbjct: 259 SDRVLASKLGSEAVHLLLEGKGGLAVGIENGK 290
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis
pdb|4A3S|B Chain B, Crystal Structure Of Pfk From Bacillus Subtilis
Length = 319
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 116/237 (48%), Gaps = 25/237 (10%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKR 209
++T GG PG+N +R +V +Y +V GI GY G + L V I R
Sbjct: 6 VLTSGGDSPGMNAAVRAVV--RKAIYHDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHR 63
Query: 210 GGTILGTSR-----GGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKV 264
GGT L T+R K + +++ GI + V+GGDG+ GA + E
Sbjct: 64 GGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------GF 117
Query: 265 AVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFI 324
G+P TIDNDIP D + GFDTA+ AI A S E V+++MGR++G I
Sbjct: 118 PCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGRHAGDI 176
Query: 325 AMYATIASRDVDCCLIPESPFYLEGPGGLFEYIE--KRLKENG--HMVIVIAEGAGQ 377
A++A +A + LIPE+ + + E I KR E G H +I++AEG G
Sbjct: 177 ALWAGLAG-GAESILIPEADY------DMHEIIARLKRGHERGKKHSIIIVAEGVGS 226
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
Length = 320
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 15/204 (7%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKR 209
++T GG PG+N IR +V + +V+GI GY G Y + L V+ + R
Sbjct: 7 VLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINR 64
Query: 210 GGTILGTS-----RGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKV 264
GGT LG++ R + + +++++ RGI+ + V+GGDG+ GA + E +
Sbjct: 65 GGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE------MGF 118
Query: 265 AVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFI 324
G+P TIDNDI D + GF TA+ AI + S + I VV++MGRY G +
Sbjct: 119 PCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQR-ISVVEVMGRYCGDL 177
Query: 325 AMYATIASRDVDCCLIPESPFYLE 348
+ A IA + ++PE F E
Sbjct: 178 TLAAAIAG-GCEFVVVPEVEFSRE 200
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 8/207 (3%)
Query: 143 SDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKI 202
S ++ I+ GG PG + VI + + K+ G +GG G + I LT +
Sbjct: 70 SKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESL 129
Query: 203 VNGIHKRGG-TILGTSRGGHDT----SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEI 257
+N GG I+ + R +T +K + ++ +N + ++GGD + A+ + E
Sbjct: 130 INSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYF 189
Query: 258 RRRGLKVAVAGIPKTIDNDI--PIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVK 315
++ G + V G+PKTID D+ I+ SFGFD+A + I +A S + VK
Sbjct: 190 KKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVK 249
Query: 316 LMGRYSGFIAMYATIASRDVDCCLIPE 342
LMGR + +A+ + + + C++ E
Sbjct: 250 LMGRSASHVALECALKTHP-NICIVSE 275
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 941
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 135/301 (44%), Gaps = 49/301 (16%)
Query: 137 EKVYFESDDVHAC---------IVTCGGLCPGLNTVIREIV-CGLYY---MYGVHKVLGI 183
EK Y DD ++T GG PG+N +R +V G+Y ++ +H+ G
Sbjct: 164 EKAYRAEDDSEKLLNPVRKTIGVMTSGGDSPGMNPFVRAVVRAGIYKGCKVFCIHE--GY 221
Query: 184 EGGYRG--FYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTS-----KIVDSIQDRGIN 236
EG RG Y + T V G GGT +GT+R K ++ D GI+
Sbjct: 222 EGLVRGGEKYIKET---QWHDVRGWLVEGGTNIGTARCKEFRERSGRLKACKNMIDMGID 278
Query: 237 QVYVLGGDGTQKGAS-------AIFEEIRRRG----------LKVAVAGIPKTIDNDIPI 279
+ V GGDG+ GA ++ EE+ + + + G +IDND+
Sbjct: 279 ALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSS 338
Query: 280 IDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCL 339
D + G ++++ RAI A S +V++MGR+ G++ + A +A+ D L
Sbjct: 339 TDATIGAFSSLDRICRAIDYIDATANSHSRAF-IVEVMGRHCGWLGLLAGLAT-SADYIL 396
Query: 340 IPESPF-YLEGPGGLFEYIEK-RLKENGHMVIVIAEGAGQELLSEIMHTMDQ-QDASGNK 396
IPE P E + + + K R + ++++AEGA LS I + DQ +D N+
Sbjct: 397 IPEKPASSREWQDQMCDIVGKHRARGKRKTIVIVAEGAISNDLSPI--SCDQVKDVLVNR 454
Query: 397 L 397
L
Sbjct: 455 L 455
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 108/262 (41%), Gaps = 27/262 (10%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTI-PLTPKIVNGIHK 208
I+ G G+N+ + + Y M H I G+ G ++ + + G
Sbjct: 576 IINVGAPAGGMNSAVYSMAT--YCMSRGHVPYAIHNGFSGLARHESVRSINWLDIEGWGS 633
Query: 209 RGGTILGTSR---GGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR----G 261
GG+ +GT+R D I + G + + ++GG + ++ + R R
Sbjct: 634 LGGSEIGTNRTLPNDADIGMIAYFFEKYGFDGLILVGG---FEAFISLHQLERARINYPS 690
Query: 262 LKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYS 321
L++ + IP TI N++P + S G DT + A + N + VV++ G S
Sbjct: 691 LRIPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYCDVIKQSAAATRNRVFVVEVQGGNS 750
Query: 322 GFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN---------GHMVIVIA 372
G+IA +A +A +PE L E LKE+ +I+ +
Sbjct: 751 GYIATHAQLAC-GAQISYVPEEGISL----AQLEMDINSLKESFANDQGKTKSGRLILKS 805
Query: 373 EGAGQELLSEIMHTMDQQDASG 394
E A + L +E++ T+ +ASG
Sbjct: 806 ENASKVLTTEVISTIIDDEASG 827
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 127/270 (47%), Gaps = 31/270 (11%)
Query: 149 CIVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVL-GIEGGYRGFYARNTIPLTPKIVNGI 206
++T GG PG+N +R +V G+++ V V G EG RG + + + V G
Sbjct: 9 AVMTSGGDSPGMNAAVRAVVRTGIHFGCDVFAVYEGYEGLLRG--GKYLKKMAWEDVRGW 66
Query: 207 HKRGGTILGTSRG-----GHDTSKIVDSIQDRGINQVYVLGGDGTQKGAS-------AIF 254
GGT++GT+R + ++ +GI+ + V GGDG+ GA ++
Sbjct: 67 LSEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLV 126
Query: 255 EEIRRRGL----------KVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEA 304
+E+ G +++ G+ +IDND+ D + G +A+E + A
Sbjct: 127 DELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVDYIDATA 186
Query: 305 ESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPF-YLEGPGGLFEYIEK-RLK 362
+S VV++MGR+ G++A+ A IA+ D IPE + + L E ++ R K
Sbjct: 187 KSHSRAF-VVEVMGRHCGWLALMAGIAT-GADYIFIPERAVPHGKWQDELKEVCQRHRSK 244
Query: 363 ENGHMVIVIAEGAGQELLSEIMHTMDQQDA 392
+ I++AEGA + L+ + D +DA
Sbjct: 245 GRRNNTIIVAEGALDDQLNPVTAN-DVKDA 273
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 24/171 (14%)
Query: 171 LYYMYGVHKVLGIEGGYRGFYARNTIPLTPKI-VNGIHKRGGTILGTSR--GGHDTSKIV 227
LY + HK I G+ G + I V H GG+ +GT+R D I
Sbjct: 417 LYCLSHGHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGSEIGTNRSVASEDLGTIA 476
Query: 228 DSIQDRGINQVYVLGGDGTQKGASAIFEEIR-----RRG------LKVAVAGIPKTIDND 276
Q ++ + +LGG FE R R G + + IP T+ N+
Sbjct: 477 YYFQKNKLDGLIILGG----------FEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNN 526
Query: 277 IPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMY 327
+P + S G DT + A + + V ++ G +SG+IA +
Sbjct: 527 VPGTEYSLGVDTCLNALVNYTDDIKQSASATRRRVFVCEVQGGHSGYIASF 577
>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
Length = 420
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 118/270 (43%), Gaps = 26/270 (9%)
Query: 206 IHKRGGT-------ILGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIR 258
IH GG + S + ++++ + I + GG +Q A + +
Sbjct: 69 IHTPGGAFGSCRYKLKNISENQREYERLIEVFRAHDIGYFFYNGGGDSQDTAYKVSQLAD 128
Query: 259 RRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESF---ENGIGVVK 315
R G + G+PKT+DND+P D GF + + + A ++ +S + +++
Sbjct: 129 RMGYPITCIGVPKTVDNDLPFTDCCPGFGSVAKYIATSTLEASLDIKSMCETSTKVFILE 188
Query: 316 LMGRYSGFIAMYATIASRDVD----CCLIPESPFYLEGPGGLFEYIEKRLKENGHMVIVI 371
+MGR++G+IA +A + L PE PF E E +++ +++ G+ V+V
Sbjct: 189 VMGRHAGWIAAAGGLAGQSEGEPPHVILFPEIPFNRE---KFLERVDQCVRDYGYCVVVA 245
Query: 372 AEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYM 431
+EGA E + +DA G+ L V ++ ++ G K + Y+
Sbjct: 246 SEGAQYE-DGRFVADAGAKDAFGHTQLGGVAPALANMVKQALGHKYHWAV------ADYL 298
Query: 432 IRAVP--SNASDNVYCTLLAHSAIHGAMAG 459
RA ++A+D + +A+ A+AG
Sbjct: 299 QRAARHIASATDVEQAYAVGKAAVEMALAG 328
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 116/274 (42%), Gaps = 32/274 (11%)
Query: 137 EKVYFESDDVHACIVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVLGIEGGYRGFYARNT 195
E+V E I+T GG PG+N +R + G++Y KV GY G
Sbjct: 202 EQVKSEEGKKKIAIITSGGDAPGMNAAVRAVTRAGIFYGC---KVYACYEGYTGLVKGGD 258
Query: 196 I--PLTPKIVNGIHKRGGTILGTSRGGHDTSK-----IVDSIQDRGINQVYVLGGDGTQK 248
+ L + V G+ GGTI+GT+R + ++ GI+ + V GGDG+
Sbjct: 259 MLKELQWQDVRGLLSIGGTIIGTARCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLT 318
Query: 249 GA-----------------SAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVE 291
GA I +E + + G+ +IDND+ D + G +++E
Sbjct: 319 GADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSSLE 378
Query: 292 EAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPG 351
+ A S VV++MGR+ G++ + + IA+ D IPE P
Sbjct: 379 RIIELVDYIDATAASHSRAF-VVEVMGRHCGWLGLMSGIAT-GADYIFIPERPPSESNWK 436
Query: 352 GLFEYIEKRLKENGH--MVIVIAEGAGQELLSEI 383
+ + R +E G +++AEGA + L+ I
Sbjct: 437 DDLKKVCLRHREKGRRKTTVIVAEGAIDDQLNPI 470
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 13/230 (5%)
Query: 142 ESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTI-PLTP 200
ES ++ I+ G LN R V L + H+V I G+ G + L
Sbjct: 595 ESSRLNIAIIHVGAPTSALNPATR--VATLNSLAKGHRVFAIRNGFAGLIRHGAVRELNW 652
Query: 201 KIVNGIHKRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIR 258
V H GG+ +GT+R D + Q + + ++GG + +A++E
Sbjct: 653 IDVEDWHNTGGSEIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGG---FEAFTALYELDA 709
Query: 259 RRG----LKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVV 314
R + + +P T+ N++P + S G DT + A A + VV
Sbjct: 710 ARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASASRRRTFVV 769
Query: 315 KLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN 364
++ G YSG++A YA + + + PE+P L+ E + + +E+
Sbjct: 770 EVQGGYSGYLASYAGLITGAL-AVYTPENPINLQTVQEDIELLTRTYEED 818
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 120/256 (46%), Gaps = 39/256 (15%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFY--ARNTIPLTPKIVNGIH 207
++T GG G+N +R +V ++ +V + GY+G + T + V+ +
Sbjct: 20 VLTSGGDAQGMNAAVRAVV--RVGIFTGARVFFVHEGYQGLVDGGDHIREATWESVSMML 77
Query: 208 KRGGTILGTSRGG-----HDTSKIVDSIQDRGINQVYVLGGDGTQKGA-------SAIFE 255
+ GGT++G++R + ++ RGI + V+GGDG+ GA S +
Sbjct: 78 QLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLS 137
Query: 256 EIRRRGLKVA----------VAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAE 305
++++ G A + G+ +IDND D + G D+A+ + A A+
Sbjct: 138 DLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITEIVDAITTTAQ 197
Query: 306 SFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFE-YIEKRLKEN 364
S + V+++MGR+ G++A+ ++ S D IPE P P +E ++ +RL E
Sbjct: 198 SHQRTF-VLEVMGRHCGYLALVTSL-SCGADWVFIPECP-----PDDNWEDHLCRRLSET 250
Query: 365 GHM-----VIVIAEGA 375
+I++AEGA
Sbjct: 251 RTRGSRLNIIIVAEGA 266
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 96/238 (40%), Gaps = 14/238 (5%)
Query: 129 HFRRVGPREKVYFESDDVHACIVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVLGIEGGY 187
H R P+ Y ++ G G+N +R V GL ++VL + G+
Sbjct: 390 HIRPPAPKSGSY------TVAVMNVGAPAAGMNAAVRSTVRIGLIQG---NRVLVVHDGF 440
Query: 188 RGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTS--KIVDSIQDRGINQVYVLGGDG 245
G V G +GG+ LG+ R S +I +I I + ++GG
Sbjct: 441 EGPAKGQIEEAGWSYVGGWTGQGGSKLGSKRTLPKKSFEQISANITKFNIQGLVIIGGFE 500
Query: 246 TQKGASAIFEEIRR-RGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEA 304
G + E ++ L + IP T+ N++P D S G DTA+ A
Sbjct: 501 AYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQSA 560
Query: 305 ESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLK 362
+ + +++ MG Y G++A A +A+ I E PF + E++ +++K
Sbjct: 561 AGTKRRVFIIETMGGYCGYLATMAGLAAGADA-AYIFEEPFTIRDLQANVEHLVQKMK 617
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 766
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 114/257 (44%), Gaps = 37/257 (14%)
Query: 149 CIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGF------YARNTIPLTPKI 202
++T GG PG+N+ +R IV + G + +EG Y G Y + +
Sbjct: 7 AVMTSGGDAPGMNSNVRAIVRSAIFK-GCRAFVVMEG-YEGLVRGGPEYIKE---FHWED 61
Query: 203 VNGIHKRGGTILGTSRGGHDTSKI-----VDSIQDRGINQVYVLGGDGTQKGAS------ 251
V G GGT +GT+R + + + G++ + V GGDG+ GA
Sbjct: 62 VRGWSAEGGTNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEW 121
Query: 252 -AIFEEIRR----------RGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAA 300
++ EE+ + R + + G +IDND+ D + G +A++ +AI
Sbjct: 122 PSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICKAIDYV 181
Query: 301 HVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFY-LEGPGGLFEYIEK 359
A S VV++MGR G++A+ A IA+ D IPE P E + + + K
Sbjct: 182 EATANSHSRAF-VVEVMGRNCGWLALLAGIAT-SADYIFIPEKPATSSEWQDQMCDIVSK 239
Query: 360 -RLKENGHMVIVIAEGA 375
R + ++V+AEGA
Sbjct: 240 HRSRGKRTTIVVVAEGA 256
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 22/237 (9%)
Query: 149 CIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTI-PLTPKIVNGIH 207
IV G G+N+ + + Y M H+ I G+ G ++ L K + G
Sbjct: 397 AIVNVGAPAGGINSAVYSMAT--YCMSQGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQ 454
Query: 208 KRGGTILGTSR---GGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR---- 260
RGG+ +GT+R D I Q + + ++GG + ++ + R R
Sbjct: 455 SRGGSEIGTNRVTPEEADLGMIAYYFQKYEFDGLIIVGG---FEAFESLHQLERARESYP 511
Query: 261 GLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRY 320
++ + IP T+ N++P + S G DTA+ A S VV G
Sbjct: 512 AFRIPMVLIPATLSNNVPGTEYSLGSDTALNALMEYCDVVKQSASSTRGRAFVVDCQGGN 571
Query: 321 SGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQ 377
SG++A YA++A +PE LE EY+ + ++ AEG G+
Sbjct: 572 SGYLATYASLAV-GAQVSYVPEEGISLEQLSEDIEYLAQSFEK--------AEGRGR 619
>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|D Chain D, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
Length = 419
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 15/157 (9%)
Query: 269 IPKTIDNDIPIIDKSFGFDT-----AVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGF 323
+PKT+DND+PI D GF + AV + + A + A S + + V+++MGR++G+
Sbjct: 139 VPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSATSTK--VFVLEVMGRHAGW 196
Query: 324 IAMYATIAS---RDVDCC-LIPESPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQEL 379
IA +AS R++ L PE F + ++ +K+ G+ +V++EG +
Sbjct: 197 IAAAGGLASSPEREIPVVILFPEISFDKQ---KFLAKVDSCVKKFGYCSVVVSEGVKGD- 252
Query: 380 LSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKK 416
+ + +DA G+ L V ++ +++ G K
Sbjct: 253 DGKFLSDQGVRDAFGHAQLGGVAPVVASMVKEGLGLK 289
>pdb|2PO7|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
pdb|2PO7|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
Length = 359
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 181 LGIEGGYRGFYARNTIPLTPKIVNGIHKRGG---TILGTSRGGHDTSKIVDSIQDRGINQ 237
L I+ F A+ LTPKI + GG + TS+ G K++D +
Sbjct: 37 LPIQNKLAPFIAKR---LTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPH 93
Query: 238 VYVLGGDGTQKGASAIFEEIRRRGLKVAVA 267
Y +G EE+ R GL+ A+A
Sbjct: 94 KYYIGFRYVHPLTEEAIEEMERDGLERAIA 123
>pdb|1HRK|A Chain A, Crystal Structure Of Human Ferrochelatase
pdb|1HRK|B Chain B, Crystal Structure Of Human Ferrochelatase
pdb|2HRC|A Chain A, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
pdb|2HRC|B Chain B, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
Length = 359
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 181 LGIEGGYRGFYARNTIPLTPKIVNGIHKRGG---TILGTSRGGHDTSKIVDSIQDRGINQ 237
L I+ F A+ LTPKI + GG + TS+ G K++D +
Sbjct: 37 LPIQNKLAPFIAKR---LTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPH 93
Query: 238 VYVLGGDGTQKGASAIFEEIRRRGLKVAVA 267
Y +G EE+ R GL+ A+A
Sbjct: 94 KYYIGFRYVHPLTEEAIEEMERDGLERAIA 123
>pdb|2PO5|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
pdb|2PO5|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
Length = 359
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 181 LGIEGGYRGFYARNTIPLTPKIVNGIHKRGG---TILGTSRGGHDTSKIVDSIQDRGINQ 237
L I+ F A+ LTPKI + GG + TS+ G K++D +
Sbjct: 37 LPIQNKLAPFIAKR---LTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPH 93
Query: 238 VYVLGGDGTQKGASAIFEEIRRRGLKVAVA 267
Y +G EE+ R GL+ A+A
Sbjct: 94 KYYIGFRYVHPLTEEAIEEMERDGLERAIA 123
>pdb|3AQI|A Chain A, H240a Variant Of Human Ferrochelatase
pdb|3AQI|B Chain B, H240a Variant Of Human Ferrochelatase
Length = 359
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 181 LGIEGGYRGFYARNTIPLTPKIVNGIHKRGG---TILGTSRGGHDTSKIVDSIQDRGINQ 237
L I+ F A+ LTPKI + GG + TS+ G K++D +
Sbjct: 37 LPIQNKLAPFIAKR---LTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPH 93
Query: 238 VYVLGGDGTQKGASAIFEEIRRRGLKVAVA 267
Y +G EE+ R GL+ A+A
Sbjct: 94 KYYIGFRYVHPLTEEAIEEMERDGLERAIA 123
>pdb|2PNJ|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
pdb|2PNJ|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
Length = 359
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 181 LGIEGGYRGFYARNTIPLTPKIVNGIHKRGG---TILGTSRGGHDTSKIVDSIQDRGINQ 237
L I+ F A+ LTPKI + GG + TS+ G K++D +
Sbjct: 37 LPIQNKLAPFIAKR---LTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPH 93
Query: 238 VYVLGGDGTQKGASAIFEEIRRRGLKVAVA 267
Y +G EE+ R GL+ A+A
Sbjct: 94 KYYIGFRYVHPLTEEAIEEMERDGLERAIA 123
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIP 278
HD DS+ DR ++Q+ + G AS++ E+ L+ +G T+ DIP
Sbjct: 492 HDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIP 549
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIP 278
HD DS+ DR ++Q+ + G AS++ E+ L+ +G T+ DIP
Sbjct: 492 HDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIP 549
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIP 278
HD DS+ DR ++Q+ + G AS++ E+ L+ +G T+ DIP
Sbjct: 491 HDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIP 548
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIP 278
HD DS+ DR ++Q+ + G AS++ E+ L+ +G T+ DIP
Sbjct: 491 HDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIP 548
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIP 278
HD DS+ DR ++Q+ + G AS++ E+ L+ +G T+ DIP
Sbjct: 203 HDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIP 260
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIP 278
HD DS+ DR ++Q+ + G AS++ E+ L+ +G T+ DIP
Sbjct: 199 HDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIP 256
>pdb|4EH1|A Chain A, Crystal Structure Of The Flavohem-Like-FadNAD BINDING
DOMAIN OF Nitric Oxide Dioxygenase From Vibrio Cholerae
O1 Biovar El Tor
pdb|4EH1|B Chain B, Crystal Structure Of The Flavohem-Like-FadNAD BINDING
DOMAIN OF Nitric Oxide Dioxygenase From Vibrio Cholerae
O1 Biovar El Tor
Length = 243
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 347 LEGPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLL 398
L P G F Y+E+ V++I+ G G + I+HT+ +Q+ SG L
Sbjct: 101 LYAPAGDFFYVERE-----RPVVLISAGVGATPMQAILHTLAKQNKSGVTYL 147
>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
Length = 340
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIP 278
HD DS+ DR ++Q + G AS++ E+ L+ +G T+ DIP
Sbjct: 199 HDVVAPTDSLTDRTLDQXSTVTRPGVAXXASSLAVELXTSLLQTKYSGSETTVLGDIP 256
>pdb|3MLP|A Chain A, Early B-Cell Factor 1 (Ebf1) Bound To Dna
pdb|3MLP|B Chain B, Early B-Cell Factor 1 (Ebf1) Bound To Dna
pdb|3MLP|E Chain E, Early B-Cell Factor 1 (Ebf1) Bound To Dna
pdb|3MLP|F Chain F, Early B-Cell Factor 1 (Ebf1) Bound To Dna
Length = 402
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 92 NPLQDNPSYSVVKQHFVDVDD---SVAQNIVVHQDSPRGRHFRRVGPRE 137
NP +D + VV V+VD +V+ N+ VH +S GR RR+ P E
Sbjct: 181 NP-RDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSE 228
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 229 SIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPI 279
+ QDR N + L + +K A A+ EE+RR ++ + G+P T+ + P+
Sbjct: 30 AFQDR--NALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPV 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,396,842
Number of Sequences: 62578
Number of extensions: 731824
Number of successful extensions: 2051
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1972
Number of HSP's gapped (non-prelim): 49
length of query: 535
length of database: 14,973,337
effective HSP length: 103
effective length of query: 432
effective length of database: 8,527,803
effective search space: 3684010896
effective search space used: 3684010896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)