Query 009394
Match_columns 535
No_of_seqs 303 out of 1565
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 12:35:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02564 6-phosphofructokinase 100.0 4E-125 9E-130 1007.6 43.9 472 60-531 2-473 (484)
2 PRK06830 diphosphate--fructose 100.0 3E-112 6E-117 905.1 39.3 417 87-509 17-442 (443)
3 PTZ00286 6-phospho-1-fructokin 100.0 5E-111 1E-115 899.6 40.0 408 104-517 44-454 (459)
4 PLN02884 6-phosphofructokinase 100.0 6E-104 1E-108 836.0 39.1 395 107-507 2-411 (411)
5 PRK06555 pyrophosphate--fructo 100.0 6.6E-90 1.4E-94 724.3 38.2 350 146-505 4-400 (403)
6 PRK14071 6-phosphofructokinase 100.0 9.9E-85 2.1E-89 681.2 34.1 331 145-496 4-350 (360)
7 PRK14072 6-phosphofructokinase 100.0 3.5E-84 7.5E-89 688.0 34.3 330 145-489 3-364 (416)
8 TIGR02483 PFK_mixed phosphofru 100.0 8.4E-84 1.8E-88 665.9 32.4 316 147-481 1-324 (324)
9 cd00363 PFK Phosphofructokinas 100.0 3.2E-83 6.9E-88 665.4 35.3 325 146-497 1-336 (338)
10 cd00763 Bacterial_PFK Phosphof 100.0 3E-82 6.5E-87 652.4 32.6 307 146-498 1-313 (317)
11 TIGR02482 PFKA_ATP 6-phosphofr 100.0 6.6E-82 1.4E-86 645.6 32.2 294 147-480 1-300 (301)
12 TIGR02478 6PF1K_euk 6-phosphof 100.0 4.8E-82 1E-86 709.4 31.5 398 74-500 303-736 (745)
13 PRK03202 6-phosphofructokinase 100.0 1.4E-80 3.1E-85 640.7 34.4 308 146-499 2-316 (320)
14 cd00764 Eukaryotic_PFK Phospho 100.0 4.7E-81 1E-85 699.2 31.0 395 74-500 306-736 (762)
15 COG0205 PfkA 6-phosphofructoki 100.0 1.6E-78 3.5E-83 628.2 30.5 310 145-486 2-318 (347)
16 TIGR02477 PFKA_PPi diphosphate 100.0 8.2E-78 1.8E-82 654.2 36.4 341 143-484 65-475 (539)
17 cd00764 Eukaryotic_PFK Phospho 100.0 5.7E-77 1.2E-81 666.4 35.1 343 144-514 2-374 (762)
18 PRK07085 diphosphate--fructose 100.0 6.9E-77 1.5E-81 648.3 34.7 364 126-495 56-507 (555)
19 TIGR02478 6PF1K_euk 6-phosphof 100.0 9.7E-77 2.1E-81 666.6 35.4 342 146-515 1-372 (745)
20 cd00765 Pyrophosphate_PFK Phos 100.0 7E-76 1.5E-80 638.6 34.4 357 126-486 56-489 (550)
21 PLN03028 pyrophosphate--fructo 100.0 4E-75 8.6E-80 638.3 34.1 357 126-483 57-483 (610)
22 PLN02251 pyrophosphate-depende 100.0 5.8E-74 1.2E-78 624.9 34.9 341 143-484 94-502 (568)
23 PF00365 PFK: Phosphofructokin 100.0 4.5E-73 9.7E-78 576.4 23.5 275 146-458 1-282 (282)
24 PTZ00468 phosphofructokinase f 100.0 2.4E-71 5.2E-76 635.7 33.1 338 145-483 102-502 (1328)
25 PTZ00287 6-phosphofructokinase 100.0 3E-70 6.5E-75 630.3 36.3 338 144-482 176-572 (1419)
26 PTZ00287 6-phosphofructokinase 100.0 1.7E-63 3.7E-68 574.5 30.8 335 143-482 834-1271(1419)
27 PTZ00468 phosphofructokinase f 100.0 1E-54 2.2E-59 499.0 30.4 334 145-483 675-1134(1328)
28 KOG2440 Pyrophosphate-dependen 100.0 8.4E-56 1.8E-60 483.2 5.4 457 59-515 26-543 (666)
29 KOG2440 Pyrophosphate-dependen 100.0 1.1E-42 2.4E-47 380.4 17.1 350 74-458 293-662 (666)
30 PRK04761 ppnK inorganic polyph 93.3 0.2 4.4E-06 51.0 6.8 62 226-302 11-81 (246)
31 PRK14077 pnk inorganic polypho 92.0 0.47 1E-05 49.3 7.4 54 234-302 64-119 (287)
32 PRK04885 ppnK inorganic polyph 91.9 0.45 9.7E-06 48.9 7.1 56 234-302 35-92 (265)
33 PRK03501 ppnK inorganic polyph 89.8 1 2.3E-05 46.3 7.5 55 234-302 39-96 (264)
34 PRK00561 ppnK inorganic polyph 89.6 0.51 1.1E-05 48.4 5.0 63 224-301 18-88 (259)
35 PRK03372 ppnK inorganic polyph 89.4 0.63 1.4E-05 48.8 5.7 55 234-303 72-128 (306)
36 PRK01911 ppnK inorganic polyph 89.3 0.71 1.5E-05 48.1 6.0 56 234-304 64-121 (292)
37 PRK14075 pnk inorganic polypho 89.1 1.1 2.5E-05 45.6 7.1 52 233-302 40-93 (256)
38 PRK04539 ppnK inorganic polyph 88.8 0.73 1.6E-05 48.1 5.6 54 234-302 68-123 (296)
39 PRK02649 ppnK inorganic polyph 87.7 0.96 2.1E-05 47.5 5.7 54 234-302 68-123 (305)
40 PRK03378 ppnK inorganic polyph 87.4 1.3 2.8E-05 46.2 6.4 53 234-301 63-117 (292)
41 PF01513 NAD_kinase: ATP-NAD k 87.1 0.38 8.1E-06 49.5 2.3 63 225-302 67-131 (285)
42 PLN02935 Bifunctional NADH kin 86.0 1.3 2.8E-05 49.6 5.7 54 234-302 262-317 (508)
43 PRK13054 lipid kinase; Reviewe 84.8 5.8 0.00012 40.9 9.6 88 220-319 42-131 (300)
44 PRK13337 putative lipid kinase 84.6 3.4 7.4E-05 42.7 7.9 90 220-321 43-132 (304)
45 PRK01231 ppnK inorganic polyph 84.4 1.8 3.9E-05 45.2 5.7 54 234-302 62-117 (295)
46 TIGR01918 various_sel_PB selen 83.4 1.8 3.9E-05 47.3 5.4 116 144-264 222-367 (431)
47 cd06321 PBP1_ABC_sugar_binding 83.4 34 0.00073 33.4 14.0 127 147-315 1-128 (271)
48 PRK13055 putative lipid kinase 83.3 3.1 6.7E-05 43.8 7.0 63 220-288 45-107 (334)
49 COG3199 Predicted inorganic po 83.3 1.5 3.3E-05 46.7 4.6 50 221-276 87-136 (355)
50 PF00532 Peripla_BP_1: Peripla 82.9 9.1 0.0002 38.9 10.0 139 214-370 36-186 (279)
51 PRK03708 ppnK inorganic polyph 82.8 1.8 3.9E-05 44.8 4.9 53 233-301 56-110 (277)
52 PRK11914 diacylglycerol kinase 82.3 2.3 4.9E-05 43.9 5.4 69 221-297 51-120 (306)
53 COG1609 PurR Transcriptional r 82.0 20 0.00044 37.6 12.5 171 146-372 59-245 (333)
54 PRK02155 ppnK NAD(+)/NADH kina 81.6 2.5 5.4E-05 44.0 5.4 53 234-301 63-117 (291)
55 PLN02958 diacylglycerol kinase 81.5 7.9 0.00017 43.1 9.6 96 178-279 112-215 (481)
56 PRK02645 ppnK inorganic polyph 81.5 2 4.4E-05 44.9 4.8 55 234-302 57-114 (305)
57 TIGR01917 gly_red_sel_B glycin 81.0 2.5 5.5E-05 46.2 5.4 117 144-265 222-368 (431)
58 PLN02727 NAD kinase 80.7 2.2 4.7E-05 50.8 5.1 54 234-302 743-798 (986)
59 cd01537 PBP1_Repressors_Sugar_ 79.1 59 0.0013 30.8 16.6 127 147-317 1-127 (264)
60 PRK14076 pnk inorganic polypho 79.1 2.9 6.3E-05 47.4 5.4 54 234-302 348-403 (569)
61 TIGR03702 lip_kinase_YegS lipi 78.8 9.1 0.0002 39.3 8.5 60 216-278 34-95 (293)
62 PRK02231 ppnK inorganic polyph 77.9 2.1 4.5E-05 44.3 3.4 52 234-300 42-95 (272)
63 PRK10014 DNA-binding transcrip 77.6 87 0.0019 31.9 20.0 87 145-269 64-150 (342)
64 COG1597 LCB5 Sphingosine kinas 75.5 11 0.00023 39.5 7.9 109 179-298 4-116 (301)
65 PRK13059 putative lipid kinase 74.9 8.5 0.00018 39.7 7.0 62 230-297 52-113 (295)
66 PRK01185 ppnK inorganic polyph 74.7 4.6 9.9E-05 41.8 4.9 52 234-303 52-105 (271)
67 PRK00861 putative lipid kinase 73.0 7.4 0.00016 40.0 6.0 69 220-296 43-111 (300)
68 cd01538 PBP1_ABC_xylose_bindin 72.8 1.1E+02 0.0023 30.6 15.9 86 147-269 1-86 (288)
69 COG0061 nadF NAD kinase [Coenz 70.5 7.9 0.00017 40.0 5.5 54 233-301 54-109 (281)
70 cd06278 PBP1_LacI_like_2 Ligan 69.8 1.1E+02 0.0023 29.5 14.1 42 222-269 42-83 (266)
71 PLN02929 NADH kinase 69.1 4.7 0.0001 42.4 3.5 64 233-302 63-136 (301)
72 PRK13057 putative lipid kinase 68.3 8.1 0.00018 39.5 5.1 85 221-320 38-122 (287)
73 PRK12361 hypothetical protein; 67.3 15 0.00034 41.2 7.4 54 220-278 283-336 (547)
74 PF00465 Fe-ADH: Iron-containi 67.2 7.2 0.00016 41.3 4.6 58 221-278 65-136 (366)
75 cd06317 PBP1_ABC_sugar_binding 65.1 1.4E+02 0.003 29.0 14.7 41 224-268 46-86 (275)
76 cd08180 PDD 1,3-propanediol de 64.8 12 0.00026 39.2 5.6 51 222-272 66-118 (332)
77 cd08172 GlyDH-like1 Glycerol d 64.4 10 0.00022 40.1 4.9 51 221-276 63-113 (347)
78 COG1570 XseA Exonuclease VII, 63.9 26 0.00057 38.8 8.1 93 144-268 134-230 (440)
79 TIGR01481 ccpA catabolite cont 63.8 1.7E+02 0.0037 29.6 13.7 84 146-269 60-144 (329)
80 cd08173 Gro1PDH Sn-glycerol-1- 63.7 14 0.0003 38.9 5.8 54 221-279 65-118 (339)
81 cd08170 GlyDH Glycerol dehydro 63.0 13 0.00027 39.3 5.4 49 221-274 64-112 (351)
82 cd08551 Fe-ADH iron-containing 62.7 14 0.00031 39.1 5.8 57 221-277 67-136 (370)
83 PRK06186 hypothetical protein; 62.1 14 0.0003 37.5 5.2 58 234-307 53-112 (229)
84 cd08195 DHQS Dehydroquinate sy 60.6 9.5 0.00021 40.3 4.0 50 221-273 69-121 (345)
85 cd06320 PBP1_allose_binding Pe 60.0 1.7E+02 0.0038 28.4 12.8 47 223-273 46-92 (275)
86 cd08177 MAR Maleylacetate redu 59.4 17 0.00038 38.2 5.7 49 221-274 64-112 (337)
87 PRK00002 aroB 3-dehydroquinate 59.3 14 0.0003 39.3 5.0 62 221-288 76-140 (358)
88 cd08199 EEVS 2-epi-5-epi-valio 58.8 11 0.00025 40.1 4.2 64 221-290 71-138 (354)
89 cd08189 Fe-ADH5 Iron-containin 58.6 22 0.00047 38.0 6.3 55 222-276 71-139 (374)
90 PRK00843 egsA NAD(P)-dependent 58.4 18 0.00039 38.4 5.6 51 221-276 74-124 (350)
91 cd06304 PBP1_BmpA_like Peripla 58.4 1.9E+02 0.0041 28.3 19.2 22 223-244 45-66 (260)
92 cd07766 DHQ_Fe-ADH Dehydroquin 57.4 18 0.00039 37.6 5.3 53 221-276 65-117 (332)
93 TIGR00147 lipid kinase, YegS/R 57.2 18 0.00039 36.9 5.2 51 224-278 47-98 (293)
94 cd08186 Fe-ADH8 Iron-containin 57.2 22 0.00047 38.2 6.0 52 221-272 71-136 (383)
95 PF00781 DAGK_cat: Diacylglyce 57.1 13 0.00028 33.3 3.7 65 222-292 41-108 (130)
96 PRK10423 transcriptional repre 56.6 2.2E+02 0.0048 28.6 18.2 70 145-247 56-125 (327)
97 TIGR01357 aroB 3-dehydroquinat 56.3 22 0.00048 37.4 5.8 49 222-273 66-117 (344)
98 cd08179 NADPH_BDH NADPH-depend 55.2 25 0.00054 37.6 6.1 34 221-254 68-101 (375)
99 TIGR02638 lactal_redase lactal 53.9 25 0.00055 37.6 5.8 52 221-272 73-139 (379)
100 cd08194 Fe-ADH6 Iron-containin 53.8 26 0.00056 37.5 5.9 52 221-272 67-131 (375)
101 cd06281 PBP1_LacI_like_5 Ligan 53.8 2.2E+02 0.0048 27.7 17.9 90 147-274 1-90 (269)
102 PRK10703 DNA-binding transcrip 53.2 2.6E+02 0.0057 28.4 19.3 70 145-247 59-128 (341)
103 COG0206 FtsZ Cell division GTP 53.1 37 0.0008 36.4 6.8 207 143-376 9-232 (338)
104 cd06273 PBP1_GntR_like_1 This 53.0 1.6E+02 0.0036 28.4 11.0 41 223-269 44-84 (268)
105 smart00046 DAGKc Diacylglycero 53.0 16 0.00035 32.8 3.6 42 234-278 49-93 (124)
106 cd03822 GT1_ecORF704_like This 53.0 1.4E+02 0.0029 29.7 10.7 85 147-244 1-86 (366)
107 cd01391 Periplasmic_Binding_Pr 52.9 1.9E+02 0.0042 26.8 13.2 137 222-373 46-191 (269)
108 cd08178 AAD_C C-terminal alcoh 52.7 32 0.00069 37.1 6.4 33 222-254 66-98 (398)
109 TIGR00288 conserved hypothetic 52.6 26 0.00057 33.7 5.1 50 220-272 88-140 (160)
110 cd08550 GlyDH-like Glycerol_de 52.5 24 0.00052 37.3 5.4 52 222-278 65-116 (349)
111 PRK09423 gldA glycerol dehydro 51.9 26 0.00056 37.3 5.5 46 222-272 72-117 (366)
112 PRK15454 ethanol dehydrogenase 51.9 28 0.0006 37.7 5.8 51 222-272 94-157 (395)
113 cd08193 HVD 5-hydroxyvalerate 51.2 30 0.00066 36.9 5.9 53 221-273 70-135 (376)
114 cd08181 PPD-like 1,3-propanedi 51.1 26 0.00057 37.2 5.4 53 221-273 70-134 (357)
115 cd08196 DHQS-like1 Dehydroquin 51.0 20 0.00044 38.2 4.5 65 222-292 61-128 (346)
116 PRK13951 bifunctional shikimat 50.6 16 0.00035 40.8 3.9 134 150-292 140-289 (488)
117 PRK15138 aldehyde reductase; P 50.4 25 0.00054 37.9 5.1 35 221-255 72-106 (387)
118 PLN02834 3-dehydroquinate synt 50.4 17 0.00038 40.0 4.0 60 222-287 148-210 (433)
119 cd08182 HEPD Hydroxyethylphosp 50.2 30 0.00066 36.7 5.7 52 222-273 65-133 (367)
120 cd06283 PBP1_RegR_EndR_KdgR_li 49.9 2.4E+02 0.0053 27.0 14.4 120 148-314 2-122 (267)
121 COG0041 PurE Phosphoribosylcar 49.8 33 0.00072 33.0 5.2 10 263-272 80-89 (162)
122 TIGR00215 lpxB lipid-A-disacch 48.9 52 0.0011 35.2 7.2 130 153-303 12-145 (385)
123 cd08197 DOIS 2-deoxy-scyllo-in 48.7 28 0.00061 37.2 5.2 49 222-273 69-120 (355)
124 PRK09860 putative alcohol dehy 48.6 37 0.00079 36.6 6.1 54 221-274 75-141 (383)
125 PRK15458 tagatose 6-phosphate 48.4 3.3E+02 0.0072 30.3 13.2 140 146-314 15-172 (426)
126 PRK10586 putative oxidoreducta 48.1 22 0.00048 38.1 4.3 60 222-287 75-134 (362)
127 cd08198 DHQS-like2 Dehydroquin 47.9 28 0.0006 37.7 5.0 64 223-292 85-151 (369)
128 COG4981 Enoyl reductase domain 47.9 1.1E+02 0.0023 35.2 9.4 94 225-341 112-218 (717)
129 PRK10355 xylF D-xylose transpo 47.8 2.2E+02 0.0047 29.6 11.5 92 144-273 24-116 (330)
130 cd06297 PBP1_LacI_like_12 Liga 47.6 1.2E+02 0.0026 29.7 9.2 41 223-267 43-84 (269)
131 cd06533 Glyco_transf_WecG_TagA 47.4 63 0.0014 30.8 6.9 88 144-243 45-133 (171)
132 PF02601 Exonuc_VII_L: Exonucl 47.1 1.5E+02 0.0033 30.8 10.2 99 144-274 13-119 (319)
133 cd06307 PBP1_uncharacterized_s 46.9 2.9E+02 0.0062 27.0 12.9 39 224-267 49-87 (275)
134 PF07905 PucR: Purine cataboli 46.5 59 0.0013 29.2 6.2 89 178-272 12-108 (123)
135 cd06302 PBP1_LsrB_Quorum_Sensi 46.4 2E+02 0.0043 28.9 10.7 86 147-269 1-87 (298)
136 PRK10624 L-1,2-propanediol oxi 45.9 41 0.00088 36.1 5.9 51 222-272 75-140 (382)
137 cd06274 PBP1_FruR Ligand bindi 45.7 2.9E+02 0.0063 26.7 14.4 41 223-269 44-84 (264)
138 cd06299 PBP1_LacI_like_13 Liga 45.7 2.8E+02 0.0062 26.6 19.1 121 147-314 1-122 (265)
139 cd08185 Fe-ADH1 Iron-containin 45.7 38 0.00082 36.2 5.6 53 221-273 70-140 (380)
140 PRK15395 methyl-galactoside AB 45.7 3.6E+02 0.0078 27.8 16.7 90 143-269 22-112 (330)
141 cd06298 PBP1_CcpA_like Ligand- 45.4 2.9E+02 0.0062 26.6 14.8 77 223-315 44-123 (268)
142 cd08176 LPO Lactadehyde:propan 45.3 45 0.00097 35.7 6.1 53 221-273 72-137 (377)
143 PRK14987 gluconate operon tran 44.9 3.5E+02 0.0076 27.4 15.4 121 146-314 64-186 (331)
144 cd08171 GlyDH-like2 Glycerol d 44.2 41 0.0009 35.5 5.6 47 222-273 66-112 (345)
145 cd06167 LabA_like LabA_like pr 44.0 36 0.00079 30.8 4.5 43 225-270 90-132 (149)
146 TIGR02810 agaZ_gatZ D-tagatose 43.6 4.3E+02 0.0093 29.4 13.1 140 146-314 11-168 (420)
147 cd08183 Fe-ADH2 Iron-containin 43.6 42 0.00092 35.8 5.6 51 222-272 63-130 (374)
148 cd08184 Fe-ADH3 Iron-containin 43.3 53 0.0011 35.1 6.2 54 222-275 66-135 (347)
149 PF05036 SPOR: Sporulation rel 43.1 35 0.00075 26.9 3.7 50 214-263 9-71 (76)
150 COG1454 EutG Alcohol dehydroge 43.0 47 0.001 36.1 5.8 51 222-272 74-137 (377)
151 PF01936 NYN: NYN domain; Int 42.8 29 0.00062 30.9 3.6 47 225-274 86-132 (146)
152 PRK10401 DNA-binding transcrip 42.8 3.9E+02 0.0084 27.3 14.2 65 146-244 60-125 (346)
153 cd06292 PBP1_LacI_like_10 Liga 42.7 3.2E+02 0.007 26.4 13.7 87 148-269 2-89 (273)
154 cd08192 Fe-ADH7 Iron-containin 42.1 53 0.0012 34.9 6.0 55 222-276 69-140 (370)
155 cd06349 PBP1_ABC_ligand_bindin 42.0 1.1E+02 0.0024 31.2 8.2 104 157-268 115-221 (340)
156 cd01575 PBP1_GntR Ligand-bindi 41.4 3.3E+02 0.0071 26.1 21.0 83 148-269 2-84 (268)
157 PRK05670 anthranilate synthase 41.3 43 0.00092 32.1 4.7 48 230-290 39-86 (189)
158 PF02645 DegV: Uncharacterised 41.0 83 0.0018 32.2 7.0 69 197-267 41-114 (280)
159 PRK13111 trpA tryptophan synth 40.8 1.5E+02 0.0033 30.4 8.8 49 222-272 105-153 (258)
160 cd08187 BDH Butanol dehydrogen 40.6 47 0.001 35.6 5.4 56 221-276 73-141 (382)
161 cd08190 HOT Hydroxyacid-oxoaci 40.4 55 0.0012 35.6 5.9 34 221-254 67-100 (414)
162 cd08174 G1PDH-like Glycerol-1- 40.0 61 0.0013 33.9 6.0 54 221-279 61-115 (331)
163 cd01539 PBP1_GGBP Periplasmic 39.8 4.1E+02 0.0088 26.8 18.3 43 223-269 46-88 (303)
164 PRK06203 aroB 3-dehydroquinate 39.7 49 0.0011 35.9 5.3 63 223-291 97-162 (389)
165 TIGR03405 Phn_Fe-ADH phosphona 39.6 58 0.0013 34.6 5.8 51 222-272 66-135 (355)
166 cd08549 G1PDH_related Glycerol 38.8 61 0.0013 34.1 5.8 49 222-276 69-117 (332)
167 PRK02261 methylaspartate mutas 38.4 1.8E+02 0.0039 26.9 8.2 123 145-300 3-133 (137)
168 cd03409 Chelatase_Class_II Cla 38.2 2.4E+02 0.0051 23.6 8.5 61 149-241 3-65 (101)
169 cd08188 Fe-ADH4 Iron-containin 37.9 76 0.0017 34.0 6.4 52 222-273 73-137 (377)
170 cd08191 HHD 6-hydroxyhexanoate 37.8 60 0.0013 34.9 5.7 52 222-273 67-131 (386)
171 cd06313 PBP1_ABC_sugar_binding 37.8 4E+02 0.0088 26.1 12.6 125 223-364 44-181 (272)
172 cd07995 TPK Thiamine pyrophosp 36.9 1.1E+02 0.0024 29.9 7.0 91 149-246 1-102 (208)
173 cd06295 PBP1_CelR Ligand bindi 36.8 3.5E+02 0.0076 26.3 10.6 42 224-271 54-95 (275)
174 PRK05637 anthranilate synthase 36.7 70 0.0015 31.6 5.5 52 228-292 38-89 (208)
175 cd01545 PBP1_SalR Ligand-bindi 36.6 3.9E+02 0.0085 25.7 14.6 45 223-272 45-89 (270)
176 PRK04011 peptide chain release 36.3 1.1E+02 0.0024 33.5 7.5 22 322-343 300-321 (411)
177 PF00289 CPSase_L_chain: Carba 35.7 55 0.0012 29.2 4.2 46 220-269 60-105 (110)
178 cd04234 AAK_AK AAK_AK: Amino A 35.1 2.4E+02 0.0053 27.9 9.1 38 207-247 4-43 (227)
179 PRK03692 putative UDP-N-acetyl 35.1 1.2E+02 0.0026 31.0 7.0 86 145-243 105-191 (243)
180 TIGR00566 trpG_papA glutamine 35.0 57 0.0012 31.4 4.5 49 228-292 37-88 (188)
181 cd08175 G1PDH Glycerol-1-phosp 34.8 57 0.0012 34.4 4.8 45 222-272 69-113 (348)
182 PRK15052 D-tagatose-1,6-bispho 34.7 3.1E+02 0.0067 30.4 10.3 139 147-314 13-168 (421)
183 TIGR01162 purE phosphoribosyla 34.6 56 0.0012 31.3 4.3 54 214-273 33-86 (156)
184 cd01965 Nitrogenase_MoFe_beta_ 34.4 6.4E+02 0.014 27.4 13.1 70 224-297 71-146 (428)
185 cd06294 PBP1_ycjW_transcriptio 34.3 3.3E+02 0.0072 26.2 9.9 40 224-269 50-89 (270)
186 cd08169 DHQ-like Dehydroquinat 34.2 61 0.0013 34.4 5.0 64 222-291 68-134 (344)
187 PRK10727 DNA-binding transcrip 34.2 5.2E+02 0.011 26.3 12.8 22 224-245 105-126 (343)
188 COG0504 PyrG CTP synthase (UTP 34.1 71 0.0015 36.0 5.5 49 235-298 344-394 (533)
189 TIGR03822 AblA_like_2 lysine-2 33.5 5.9E+02 0.013 26.8 14.6 160 150-320 140-310 (321)
190 TIGR00640 acid_CoA_mut_C methy 33.4 3E+02 0.0066 25.3 8.8 118 145-299 2-125 (132)
191 cd00537 MTHFR Methylenetetrahy 33.2 50 0.0011 33.6 4.0 88 179-270 30-137 (274)
192 COG0371 GldA Glycerol dehydrog 33.1 63 0.0014 35.0 4.8 54 221-279 71-124 (360)
193 cd06310 PBP1_ABC_sugar_binding 32.9 4.6E+02 0.01 25.3 15.2 83 223-315 46-130 (273)
194 cd06287 PBP1_LacI_like_8 Ligan 32.7 5E+02 0.011 25.7 13.9 21 153-173 13-35 (269)
195 cd01977 Nitrogenase_VFe_alpha 32.7 6.7E+02 0.015 27.2 13.9 151 224-415 77-234 (415)
196 PF04405 ScdA_N: Domain of Unk 32.6 46 0.00099 26.5 2.8 26 224-251 13-38 (56)
197 cd06277 PBP1_LacI_like_1 Ligan 32.6 4.7E+02 0.01 25.3 12.5 39 224-269 48-86 (268)
198 CHL00101 trpG anthranilate syn 32.5 60 0.0013 31.3 4.2 21 229-249 38-58 (190)
199 PF04263 TPK_catalytic: Thiami 32.3 1.9E+02 0.0041 26.3 7.2 68 179-246 18-96 (123)
200 cd01542 PBP1_TreR_like Ligand- 32.2 4.6E+02 0.0099 25.1 11.1 83 148-269 2-84 (259)
201 PF03808 Glyco_tran_WecB: Glyc 32.1 1.9E+02 0.0041 27.5 7.5 38 145-188 48-85 (172)
202 cd02071 MM_CoA_mut_B12_BD meth 31.7 2.4E+02 0.0053 25.1 7.8 46 202-247 42-92 (122)
203 TIGR00237 xseA exodeoxyribonuc 31.4 3.5E+02 0.0076 29.8 10.4 41 235-275 188-232 (432)
204 PF02844 GARS_N: Phosphoribosy 31.1 49 0.0011 29.4 3.0 90 146-269 1-92 (100)
205 COG1122 CbiO ABC-type cobalt t 31.0 1.3E+02 0.0028 30.4 6.5 98 271-372 95-196 (235)
206 TIGR01916 F420_cofE F420-0:gam 30.9 1.4E+02 0.0031 30.6 6.7 59 308-375 88-151 (243)
207 PLN00197 beta-amylase; Provisi 30.7 2.9E+02 0.0063 31.7 9.6 95 223-317 129-273 (573)
208 TIGR00732 dprA DNA protecting 30.6 4.7E+02 0.01 26.1 10.3 104 151-275 77-193 (220)
209 PLN02204 diacylglycerol kinase 30.5 63 0.0014 37.3 4.5 70 178-251 160-235 (601)
210 PF02401 LYTB: LytB protein; 30.3 76 0.0017 33.1 4.8 51 222-274 198-248 (281)
211 PRK00286 xseA exodeoxyribonucl 30.2 3.6E+02 0.0079 29.4 10.2 111 145-292 135-256 (438)
212 cd06268 PBP1_ABC_transporter_L 30.0 4.2E+02 0.0092 25.3 9.8 62 206-270 159-223 (298)
213 smart00481 POLIIIAc DNA polyme 29.9 1.7E+02 0.0037 22.9 5.8 51 221-273 15-65 (67)
214 PRK06774 para-aminobenzoate sy 29.8 57 0.0012 31.3 3.6 50 228-290 37-86 (191)
215 PF04208 MtrA: Tetrahydrometha 29.7 1E+02 0.0023 30.1 5.2 53 209-262 40-95 (176)
216 KOG4180 Predicted kinase [Gene 29.7 38 0.00083 36.3 2.4 68 196-269 45-135 (395)
217 PRK15408 autoinducer 2-binding 29.6 6.7E+02 0.015 26.2 15.3 180 144-365 22-208 (336)
218 cd01972 Nitrogenase_VnfE_like 29.5 6.4E+02 0.014 27.4 12.0 154 224-415 79-238 (426)
219 cd06342 PBP1_ABC_LIVBP_like Ty 29.4 3.4E+02 0.0073 27.3 9.3 102 158-268 116-221 (334)
220 cd06275 PBP1_PurR Ligand-bindi 29.4 5.2E+02 0.011 24.8 11.0 25 222-246 43-67 (269)
221 TIGR02417 fruct_sucro_rep D-fr 29.0 6.1E+02 0.013 25.5 18.9 136 146-327 61-204 (327)
222 TIGR00111 pelota probable tran 28.8 5.2E+02 0.011 27.7 10.9 136 222-375 182-331 (351)
223 PLN02335 anthranilate synthase 28.8 78 0.0017 31.5 4.4 46 230-288 58-103 (222)
224 PRK06843 inosine 5-monophospha 28.3 7.1E+02 0.015 27.5 11.9 102 221-341 179-285 (404)
225 PLN02803 beta-amylase 28.0 3.5E+02 0.0075 31.0 9.5 95 223-317 109-253 (548)
226 PRK05096 guanosine 5'-monophos 28.0 4E+02 0.0086 28.9 9.6 104 223-342 138-243 (346)
227 TIGR02634 xylF D-xylose ABC tr 28.0 6.4E+02 0.014 25.4 13.7 43 223-269 43-85 (302)
228 KOG0066 eIF2-interacting prote 27.9 1.9E+02 0.0042 32.6 7.4 88 285-375 665-761 (807)
229 cd06335 PBP1_ABC_ligand_bindin 27.8 4.1E+02 0.0089 27.3 9.8 61 205-268 161-224 (347)
230 PRK01045 ispH 4-hydroxy-3-meth 27.7 1.6E+02 0.0034 31.1 6.6 77 222-300 199-279 (298)
231 PRK13293 F420-0--gamma-glutamy 27.7 1.2E+02 0.0026 31.2 5.6 59 309-376 90-153 (245)
232 cd06347 PBP1_ABC_ligand_bindin 27.6 3.3E+02 0.0072 27.3 8.8 59 207-268 161-222 (334)
233 PRK14021 bifunctional shikimat 27.5 60 0.0013 36.8 3.7 64 223-292 255-321 (542)
234 PF00710 Asparaginase: Asparag 27.1 3.5E+02 0.0077 28.3 9.1 60 221-281 57-118 (313)
235 PRK15404 leucine ABC transport 27.0 3.3E+02 0.0072 28.6 9.0 62 204-268 183-247 (369)
236 KOG4435 Predicted lipid kinase 26.9 93 0.002 34.4 4.7 49 223-274 106-154 (535)
237 COG2086 FixA Electron transfer 26.8 6E+02 0.013 26.4 10.5 114 270-409 21-137 (260)
238 cd06285 PBP1_LacI_like_7 Ligan 26.6 5.9E+02 0.013 24.5 15.0 82 148-269 2-84 (265)
239 cd06326 PBP1_STKc_like Type I 26.5 4.8E+02 0.01 26.3 9.8 103 157-269 117-223 (336)
240 PRK12767 carbamoyl phosphate s 26.4 4.6E+02 0.01 26.7 9.8 40 222-262 57-96 (326)
241 PF13727 CoA_binding_3: CoA-bi 26.3 1.2E+02 0.0026 27.5 4.9 44 223-266 130-173 (175)
242 TIGR00676 fadh2 5,10-methylene 26.0 89 0.0019 32.0 4.4 50 222-271 74-135 (272)
243 PLN02705 beta-amylase 25.7 4.2E+02 0.0091 31.0 9.7 101 223-323 270-421 (681)
244 TIGR00262 trpA tryptophan synt 25.6 1.1E+02 0.0024 31.2 4.9 49 222-272 103-151 (256)
245 PF00731 AIRC: AIR carboxylase 25.5 56 0.0012 31.1 2.5 51 216-272 37-87 (150)
246 cd06315 PBP1_ABC_sugar_binding 25.4 6.5E+02 0.014 24.8 10.4 66 147-245 2-67 (280)
247 PF07755 DUF1611: Protein of u 25.3 5.4E+02 0.012 27.3 10.0 176 143-340 33-220 (301)
248 cd06296 PBP1_CatR_like Ligand- 25.2 6.2E+02 0.013 24.3 16.7 41 223-269 44-84 (270)
249 PRK13805 bifunctional acetalde 24.9 1.3E+02 0.0028 36.1 6.0 33 222-254 527-559 (862)
250 cd06346 PBP1_ABC_ligand_bindin 24.9 5.1E+02 0.011 26.1 9.7 62 204-268 159-223 (312)
251 TIGR01302 IMP_dehydrog inosine 24.8 4.8E+02 0.01 28.8 10.0 101 223-342 252-357 (450)
252 KOG1116 Sphingosine kinase, in 24.7 40 0.00086 38.5 1.6 109 222-336 224-337 (579)
253 cd06329 PBP1_SBP_like_3 Peripl 24.5 4.6E+02 0.0099 26.9 9.4 63 204-269 165-233 (342)
254 PLN02801 beta-amylase 24.4 4.7E+02 0.01 29.8 9.7 96 223-318 39-185 (517)
255 cd01966 Nitrogenase_NifN_1 Nit 24.4 6.8E+02 0.015 27.3 11.0 70 224-297 71-146 (417)
256 cd02072 Glm_B12_BD B12 binding 24.2 1.3E+02 0.0028 27.9 4.6 41 221-262 65-109 (128)
257 cd01968 Nitrogenase_NifE_I Nit 24.2 9.2E+02 0.02 26.0 13.1 150 223-414 75-229 (410)
258 cd00381 IMPDH IMPDH: The catal 24.2 8E+02 0.017 25.9 11.2 104 222-340 121-225 (325)
259 PLN02821 1-hydroxy-2-methyl-2- 24.1 1.5E+02 0.0033 33.2 5.8 52 222-274 350-401 (460)
260 cd00316 Oxidoreductase_nitroge 24.1 7.8E+02 0.017 25.9 11.3 152 223-415 69-225 (399)
261 TIGR00696 wecB_tagA_cpsF bacte 24.1 2.6E+02 0.0056 27.1 6.9 86 145-243 48-134 (177)
262 cd06303 PBP1_LuxPQ_Quorum_Sens 24.0 7E+02 0.015 24.5 13.7 24 223-246 49-72 (280)
263 TIGR01861 ANFD nitrogenase iro 23.8 2.1E+02 0.0046 32.3 7.1 106 147-254 131-248 (513)
264 TIGR01501 MthylAspMutase methy 23.8 4.1E+02 0.0088 24.8 7.8 119 147-298 3-129 (134)
265 PRK10247 putative ABC transpor 23.7 1.3E+02 0.0029 29.3 5.0 59 315-374 137-197 (225)
266 cd06314 PBP1_tmGBP Periplasmic 23.7 6.8E+02 0.015 24.3 17.6 42 223-269 44-85 (271)
267 PRK04155 chaperone protein Hch 23.6 8.6E+02 0.019 25.4 11.2 39 223-261 134-180 (287)
268 PRK14462 ribosomal RNA large s 23.1 5.3E+02 0.011 27.9 9.7 162 149-326 163-349 (356)
269 PLN02905 beta-amylase 23.1 4.8E+02 0.01 30.6 9.6 100 223-322 288-438 (702)
270 TIGR02826 RNR_activ_nrdG3 anae 22.9 2.1E+02 0.0044 26.9 5.8 43 222-265 47-92 (147)
271 COG1303 Uncharacterized protei 22.8 4E+02 0.0087 26.0 7.6 90 149-256 34-124 (179)
272 cd06293 PBP1_LacI_like_11 Liga 22.8 7E+02 0.015 24.1 15.5 89 223-327 44-142 (269)
273 PF04122 CW_binding_2: Putativ 22.6 1.4E+02 0.0031 25.0 4.3 37 210-248 50-86 (92)
274 TIGR01284 alt_nitrog_alph nitr 22.5 1.1E+03 0.023 26.2 14.3 152 223-414 113-270 (457)
275 cd04509 PBP1_ABC_transporter_G 22.5 6.3E+02 0.014 24.1 9.4 61 206-269 160-225 (299)
276 TIGR00238 KamA family protein. 22.4 9.4E+02 0.02 25.4 11.3 156 149-318 162-331 (331)
277 KOG2178 Predicted sugar kinase 22.2 37 0.00081 37.1 0.8 56 233-303 167-224 (409)
278 PRK05660 HemN family oxidoredu 22.2 87 0.0019 33.6 3.6 66 233-298 57-137 (378)
279 PF10126 Nit_Regul_Hom: Unchar 22.2 2.6E+02 0.0057 25.4 5.9 74 186-271 27-102 (110)
280 cd06354 PBP1_BmpA_PnrA_like Pe 21.8 7.7E+02 0.017 24.2 15.0 63 147-243 1-66 (265)
281 cd06337 PBP1_ABC_ligand_bindin 21.8 2.2E+02 0.0047 29.6 6.4 61 206-269 172-235 (357)
282 PTZ00314 inosine-5'-monophosph 21.8 6.6E+02 0.014 28.3 10.5 98 225-342 271-374 (495)
283 cd06334 PBP1_ABC_ligand_bindin 21.7 9.2E+02 0.02 25.1 11.2 103 158-268 117-226 (351)
284 PRK11303 DNA-binding transcrip 21.6 8.3E+02 0.018 24.5 20.3 86 146-269 62-147 (328)
285 COG0602 NrdG Organic radical a 21.6 2.1E+02 0.0045 28.5 5.8 81 175-264 4-102 (212)
286 TIGR00677 fadh2_euk methylenet 21.3 1.3E+02 0.0029 31.1 4.6 55 216-270 67-138 (281)
287 PF09288 UBA_3: Fungal ubiquit 21.2 1.2E+02 0.0026 24.3 3.2 45 198-257 8-53 (55)
288 PRK05261 putative phosphoketol 21.2 8.9E+02 0.019 29.2 11.7 178 130-316 28-282 (785)
289 PF09651 Cas_APE2256: CRISPR-a 21.1 2.8E+02 0.006 25.6 6.2 97 237-343 24-126 (136)
290 PLN02161 beta-amylase 21.1 5.6E+02 0.012 29.3 9.4 100 223-322 119-268 (531)
291 PRK09435 membrane ATPase/prote 20.9 7.9E+02 0.017 26.2 10.4 31 310-345 150-180 (332)
292 PRK11629 lolD lipoprotein tran 20.9 1.6E+02 0.0035 28.8 4.9 51 323-374 153-205 (233)
293 PF13458 Peripla_BP_6: Peripla 20.7 6.3E+02 0.014 25.4 9.4 100 157-264 115-217 (343)
294 PRK10771 thiQ thiamine transpo 20.6 1.7E+02 0.0036 28.7 5.0 59 315-374 129-189 (232)
295 TIGR00216 ispH_lytB (E)-4-hydr 20.6 3.2E+02 0.0069 28.7 7.1 52 221-274 196-247 (280)
296 PRK03359 putative electron tra 20.5 3.4E+02 0.0074 27.9 7.3 51 225-276 71-126 (256)
297 cd06267 PBP1_LacI_sugar_bindin 20.4 7.2E+02 0.016 23.3 9.2 83 147-269 1-84 (264)
298 PRK08007 para-aminobenzoate sy 20.3 1.2E+02 0.0026 29.2 3.8 50 228-290 37-86 (187)
299 TIGR03100 hydr1_PEP hydrolase, 20.3 8.7E+02 0.019 24.3 10.8 87 236-330 28-119 (274)
300 TIGR01303 IMP_DH_rel_1 IMP deh 20.3 7.4E+02 0.016 27.8 10.4 103 223-342 253-358 (475)
No 1
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=4.3e-125 Score=1007.55 Aligned_cols=472 Identities=83% Similarity=1.337 Sum_probs=447.8
Q ss_pred CCccceeccCCccccccccchhhhccCCCCCCCCCCCCCccccccccccccChhHHHHHhhcccCCccccccccCCcccc
Q 009394 60 NSERKIITGEAGYVLEDVPHFSDYISDLPTHPNPLQDNPSYSVVKQHFVDVDDSVAQNIVVHQDSPRGRHFRRVGPREKV 139 (535)
Q Consensus 60 ~~~~~~~~~~~~~~~e~V~~l~~~~p~~p~~~~pl~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~~r~~~f~~agpr~~~ 139 (535)
.++.|+++|++||++|+||||.+|+|+.|++++||..|+.++.....||++++.|++.+..++...++.+|++||||+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~~~agpr~~i 81 (484)
T PLN02564 2 SSKPKIVTGDAGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKIVVHKDSPRGTHFRRAGPRQKV 81 (484)
T ss_pred CCcCccccCCCceeeccCcchhhcCCCcCCCCCccCCCcccccccceEeCCCCeEEEeecccccccCCccceecCCcceE
Confidence 46789999999999999999999999999999999999999999999999999999988877667788999999999999
Q ss_pred ccCCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC
Q 009394 140 YFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG 219 (535)
Q Consensus 140 ~~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~ 219 (535)
||+|+++|||||||||||||||+|||++|+.+.+.|++.+||||++||+||+++++++|+|+.|++|+++|||+|||||+
T Consensus 82 ~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTsR~ 161 (484)
T PLN02564 82 YFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRG 161 (484)
T ss_pred EEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCCceeccCCC
Confidence 99999999999999999999999999999998877888899999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHH
Q 009394 220 GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISA 299 (535)
Q Consensus 220 ~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~ 299 (535)
++++++++++|++++||+||+|||||||++|++|+++++++|++|+||||||||||||++||+|||||||+++++++|++
T Consensus 162 ~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~~~~~aI~~ 241 (484)
T PLN02564 162 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA 241 (484)
T ss_pred cchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhCCcEEEEEecCCCchh
Q 009394 300 AHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQEL 379 (535)
Q Consensus 300 i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~~~~vIVVaEGa~~~~ 379 (535)
+++||.|+++||||||+|||+|||||++++||+++||+|||||.||+++++.+++++|++|+++++|+|||||||+++.+
T Consensus 242 i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf~le~~~~ll~~i~~rl~~~~~~VIVVAEGagq~~ 321 (484)
T PLN02564 242 AHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVIVVAEGAGQDL 321 (484)
T ss_pred HHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCCCcchHHHHHHHHHHHHhccCCEEEEEeCCCccch
Confidence 99999999889999999999999999999999966999999999999998889999999999999999999999999888
Q ss_pred hHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcC
Q 009394 380 LSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAG 459 (535)
Q Consensus 380 ~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG 459 (535)
+.+.++....+|++||++|++++.||+++|+++++.+.++.+++||++|||+|||++|+++|++||++||+.|||++|+|
T Consensus 322 ~~~~~~~~~~~Da~Gn~~l~dig~~La~~I~~~~~~~~~~~~~~r~i~lgy~qRgg~p~a~Dri~a~~lG~~AV~~~~aG 401 (484)
T PLN02564 322 IAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKKMPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAG 401 (484)
T ss_pred hhhhhcccccccccCCcccCcHHHHHHHHHHHHhhhcccCCceEEEecCCchhcCCCCcHHHHHHHHHHHHHHHHHHHcC
Confidence 77655444568999999999999999999999995455566789999999999999999999999999999999999999
Q ss_pred CCceEEEEeCCeeeeeeHHHHHhhCCcCCCChHHHHHHHHhcCCCCCCChHHhhhhhhhcccccccccCCCc
Q 009394 460 YTGFTVGPVNGRHAYIPFYRITERQNRVVITDRMWARLLSSTNQPSFLDPKKVKQSKEEGKLDTQLFNHAPK 531 (535)
Q Consensus 460 ~tG~mVgi~~~~~~~iPl~~v~~~~k~v~~~~~~w~~~l~~tgqp~f~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (535)
+||+||+++|++++++||++++..+|+|++++++|+++|++||||+|++++++.+.+++++..++..+..|.
T Consensus 402 ~tg~mVg~~~~~~~~vPi~~~~~~~~~v~~~~~~w~~~l~~t~qp~f~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (484)
T PLN02564 402 YTGFTVGPVNGRHAYIPFYRITEKQNKVVITDRMWARLLSSTNQPSFLSPKDVLEAKREDEEAEKLDDGPLS 473 (484)
T ss_pred CCCEEEEEECCEEEEEEHHHHhccCCccCCChHHHHHHHHHcCCCCccCchhhhhhhhhccccccccCCCcc
Confidence 999999999999999999999999999999999999999999999999999999988777776666665554
No 2
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=2.8e-112 Score=905.08 Aligned_cols=417 Identities=52% Similarity=0.866 Sum_probs=393.0
Q ss_pred CCCCCCCCCCCCccccccccccccChhHHHHHhhccc------CCccccccccCCccccccCCCCeeEEEEccCCCCCch
Q 009394 87 LPTHPNPLQDNPSYSVVKQHFVDVDDSVAQNIVVHQD------SPRGRHFRRVGPREKVYFESDDVHACIVTCGGLCPGL 160 (535)
Q Consensus 87 ~p~~~~pl~~n~~~~~~~~~~V~~t~~V~~~~~~~~~------~~r~~~f~~agpr~~~~~~~~~~~iaIvtsGG~apGm 160 (535)
-++++|||..+..++... +||++++.|+..+..+.. ..+..+|++||||+++||+|+++||||||||||||||
T Consensus 17 ~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i~f~p~~~riaIvtsGG~~PGm 95 (443)
T PRK06830 17 ECKIPSPLIYSLAAGDTT-HFVSDSDRVLFDVSLSLIKEEDAPGTEPPSFEKAGPREKIYFDPSKVKAAIVTCGGLCPGL 95 (443)
T ss_pred CCCCCCcccccccccccc-eecCCCceEEEecccccccccccCccccchhhhcCCcceeEEcCcccEEEEECCCCCchHH
Confidence 477899999998888877 899999999887665432 2356789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEEccccccccC---CCeeeCCHhHHhchhcccCcceeccCCCCcHHHHHHHHHHhCCcE
Q 009394 161 NTVIREIVCGLYYMYGVHKVLGIEGGYRGFYA---RNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQ 237 (535)
Q Consensus 161 NavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~---~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ki~~~l~~~~Id~ 237 (535)
|++||++|+.+.++|++.+||||++||+||++ +++++|+|+.|++|+++|||+|||||+++++++++++|++++||+
T Consensus 96 N~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GGTiLGTsR~~~~~~~iv~~L~~~~I~~ 175 (443)
T PRK06830 96 NDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGTILGSSRGPQDPEEIVDTLERMNINI 175 (443)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCCccccCCCCchhHHHHHHHHHHcCCCE
Confidence 99999999999877888999999999999998 899999999999999999999999999999999999999999999
Q ss_pred EEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHHHhhhhcCcceEEEEEec
Q 009394 238 VYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLM 317 (535)
Q Consensus 238 LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvM 317 (535)
||+|||||||++|++|+++++++|++|+||||||||||||++||+|||||||+++++++|+++++||.|+++||||||+|
T Consensus 176 L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~~a~~aI~~~~~eA~s~~~rv~iVEvM 255 (443)
T PRK06830 176 LFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEKATEAIRCAHVEANGAPNGIGLVKLM 255 (443)
T ss_pred EEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhCCcEEEEEecCCCchhhHHHhhhcccccccCCcc
Q 009394 318 GRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKL 397 (535)
Q Consensus 318 GR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~~~~vIVVaEGa~~~~~~~~~~~~~~~Da~Gn~~ 397 (535)
||+|||||++++||+++||+|||||.||+++++.+++++|++|+++++|+|||||||+++.+... ...+|+|||++
T Consensus 256 GR~sG~lA~~aaLA~~~ad~ilIPE~~f~l~~~~~ll~~l~~r~~~~~~~VIVVAEGag~~l~~~----~~~~Da~gn~~ 331 (443)
T PRK06830 256 GRHSGFIAAYAALASKDVNFVLIPEVPFDLEGPNGLLAALEKRLAERGHAVIVVAEGAGQELFDD----TGETDASGNPK 331 (443)
T ss_pred CCcccHHHHHHHHhcCCCCEEEecCCCCCchhHHHHHHHHHHHHHhCCceEEEEecCcccccccc----cccccccCCcc
Confidence 99999999999999967999999999999999999999999999999999999999998876532 24689999999
Q ss_pred chhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEeCCeeeeeeH
Q 009394 398 LQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPF 477 (535)
Q Consensus 398 l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG~tG~mVgi~~~~~~~iPl 477 (535)
|++++.+|+++|+++|+. ..+.+++||++|||+|||++||++|++||++||+.|||++|+|+||+||++++++++++||
T Consensus 332 l~~ig~~L~~~i~~~~~~-~~~~~~~r~~~pgy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~~~~~vPl 410 (443)
T PRK06830 332 LGDIGLFLKDRIKEYFKA-RGIPINLKYIDPSYIIRSVPANANDSVYCGFLGQNAVHAAMAGKTGMVVGRWNNRFVHLPI 410 (443)
T ss_pred cccHHHHHHHHHHHHhcc-cCCceEEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEeH
Confidence 999999999999999963 3455789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCcCCCChHHHHHHHHhcCCCCCCCh
Q 009394 478 YRITERQNRVVITDRMWARLLSSTNQPSFLDP 509 (535)
Q Consensus 478 ~~v~~~~k~v~~~~~~w~~~l~~tgqp~f~~~ 509 (535)
+++++.+|+|++++.+|+++|++||||+|+.+
T Consensus 411 ~~v~~~~k~vd~~~~~w~~~l~~tgq~~~~~~ 442 (443)
T PRK06830 411 DLAVSKRKKVNPEGDLWRSVLESTGQPRSMGN 442 (443)
T ss_pred HHHhccCCCCCCccHHHHHHHHHhCCCccccc
Confidence 99999889999999999999999999999875
No 3
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=4.8e-111 Score=899.64 Aligned_cols=408 Identities=52% Similarity=0.878 Sum_probs=382.2
Q ss_pred cccccccChhHHHHHhhccc--CCccccccccCCccccccCCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEE
Q 009394 104 KQHFVDVDDSVAQNIVVHQD--SPRGRHFRRVGPREKVYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVL 181 (535)
Q Consensus 104 ~~~~V~~t~~V~~~~~~~~~--~~r~~~f~~agpr~~~~~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~ 181 (535)
...||++++.|+..+..++. ..+..+|++||||+++||+|+++|||||||||||||||+|||++|+.+.+.|++.+||
T Consensus 44 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~agpr~~~~f~p~~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~ 123 (459)
T PTZ00286 44 REAFVDTNSYILSTPRFGPDDVIVNTKRWLRAGPRKHLYFNPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIY 123 (459)
T ss_pred ccceecCCCeEEeecccCccccccccchheecCCceeEEEcccccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEE
Confidence 34899999999988776542 3456899999999999999999999999999999999999999999998778889999
Q ss_pred EEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcC
Q 009394 182 GIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRG 261 (535)
Q Consensus 182 Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g 261 (535)
||++||+||+++++++|+|+.|++|+++|||+|||||+++++++++++|++++||+||+|||||||++|.+|+++++++|
T Consensus 124 Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTSR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g 203 (459)
T PTZ00286 124 GAKYGYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSRGGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRK 203 (459)
T ss_pred EEecCHHHhcCCCeEECCHHHhhhHHhCCCceeccCCChhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecC
Q 009394 262 LKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIP 341 (535)
Q Consensus 262 ~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIP 341 (535)
++|+||||||||||||++||+|||||||+++++++|+++++||.|++|+|||||+|||+|||||++++||+++||+||||
T Consensus 204 ~~I~VIGIPKTIDNDI~~td~S~GFdTAv~~~~~aI~~~~~eA~S~~~~v~iVEvMGR~sG~LAl~aaLA~~~ad~vlIP 283 (459)
T PTZ00286 204 LNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAAYVEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIP 283 (459)
T ss_pred CCceEEEeccccCCCCCCcccCcCchHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcchhHHHHHHhhhhcCCCEEEeC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999669999999
Q ss_pred CCCCCCCCcchHHHHHHHHHHhCCcEEEEEecCCCchhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEE
Q 009394 342 ESPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTI 421 (535)
Q Consensus 342 E~pf~l~~~~~l~e~I~~rl~~~~~~vIVVaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~ 421 (535)
|.||+++ +++++|++|+++++|+|||||||+++.+.+..+ ...+|++||++|+|+|.+|+++|+++|+. .+..+
T Consensus 284 E~~f~l~---~ll~~l~~r~~~~~~~VIVVaEGa~~~~~~~~~--~~~~D~~Gn~~l~dig~~L~~~I~~~~~~-~~~~~ 357 (459)
T PTZ00286 284 EFDIPLE---GVLEYIEQRLQKKGHCVIVVAEGAGQSLKDADL--DLGTDASGNKKLWDIGVYLKDEITKYLKK-KKPEH 357 (459)
T ss_pred CCCCCHH---HHHHHHHHHHhcCCcEEEEEecCCccccccccc--cccccccCCcccccHHHHHHHHHHHHHhh-ccCce
Confidence 9999987 899999999999999999999999987765543 23589999999999999999999999963 34567
Q ss_pred EeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEeCCeeeeeeHHHH-HhhCCcCCCChHHHHHHHHh
Q 009394 422 NLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPFYRI-TERQNRVVITDRMWARLLSS 500 (535)
Q Consensus 422 ~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG~tG~mVgi~~~~~~~iPl~~v-~~~~k~v~~~~~~w~~~l~~ 500 (535)
++||++|||+|||++||++|+.||++||+.|||++|+|+||+||++++++++++||+++ ...+|+|++++++|.+++++
T Consensus 358 ~~r~~~~gy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~~~~~vPl~~v~~~~~~~v~~~~~~w~~~~~~ 437 (459)
T PTZ00286 358 TVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGFIIGHVHNNYVMIPIKEMSGNYRRRVNPEGRLWQRMLAI 437 (459)
T ss_pred EEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEeHHHHhCCCccccCcchHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999994 56778999999999999999
Q ss_pred cCCCCCCChHHhhhhhh
Q 009394 501 TNQPSFLDPKKVKQSKE 517 (535)
Q Consensus 501 tgqp~f~~~~~~~~~~~ 517 (535)
||||+|+++++..++++
T Consensus 438 tgqp~~~~~~~~~~~~~ 454 (459)
T PTZ00286 438 TGQPSFLNNEEIERHQR 454 (459)
T ss_pred cCCCCccccHHHHHHHH
Confidence 99999999887766653
No 4
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=5.6e-104 Score=835.97 Aligned_cols=395 Identities=53% Similarity=0.916 Sum_probs=361.3
Q ss_pred ccccChhHHHHHhhccc--C-----------CccccccccCCccccccCCCCeeEEEEccCCCCCchhHHHHHHHHHHHH
Q 009394 107 FVDVDDSVAQNIVVHQD--S-----------PRGRHFRRVGPREKVYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYY 173 (535)
Q Consensus 107 ~V~~t~~V~~~~~~~~~--~-----------~r~~~f~~agpr~~~~~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~ 173 (535)
||.++|+|+.+...-.. + .....|+|||||+++||+|+++|||||||||||||||+|||++|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~- 80 (411)
T PLN02884 2 YVNNDDRVLLKVIKYSSPTSAGAECIDPDCSWVEQWVHRAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLE- 80 (411)
T ss_pred CcCccchhheeeeeccCCCcccccccCCCcccchhhhhhcCCceeEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHH-
Confidence 67777777776542111 1 123578999999999999999999999999999999999999999875
Q ss_pred hcCCeEEEEEccccccccCCC--eeeCCHhHHhchhcccCcceeccCCCCcHHHHHHHHHHhCCcEEEEecCCcchHHHH
Q 009394 174 MYGVHKVLGIEGGYRGFYARN--TIPLTPKIVNGIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGAS 251 (535)
Q Consensus 174 ~~~~~~V~Gi~~G~~GL~~~~--~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~ 251 (535)
.++..+||||++||+||++++ .++|+|+.|++|+++|||+|||||++.++++++++|++++||+||+|||||||++|.
T Consensus 81 ~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~ 160 (411)
T PLN02884 81 IYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGSLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGAN 160 (411)
T ss_pred HcCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCceeccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHH
Confidence 467668999999999999998 667899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHh
Q 009394 252 AIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIA 331 (535)
Q Consensus 252 ~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLA 331 (535)
+|+++++++|++++||||||||||||++||+|||||||+++++++|++++++|.|+++||||||+|||+|||||+++|||
T Consensus 161 ~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~~~~~ai~~l~~tA~s~~~rv~iVEvMGR~aG~LAl~aalA 240 (411)
T PLN02884 161 AIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASLA 240 (411)
T ss_pred HHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHHHHHHHHHHHHHhhhccCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999886678999999999999999999999
Q ss_pred cCCccEEecCCCCCCCCCcchHHHHHHHHHHhCCcEEEEEecCCCchhhHHHhhhcccccccCCccchhhHHHHHHHHHH
Q 009394 332 SRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRD 411 (535)
Q Consensus 332 s~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~~~~vIVVaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~ 411 (535)
++.||+|||||.||+++++++++++|+++++.++|++||||||+++.+... ...+|++||++|++++.+|+++|++
T Consensus 241 ~g~ad~ilIPE~~f~~~~~~~~~~~i~~~~~~k~~~iIVVAEG~g~~~~~~----~~~~Da~G~~~l~~~~~~La~~i~~ 316 (411)
T PLN02884 241 SGQVDICLIPEVPFTLDGPNGVLRHLEHLIETKGSAVVCVAEGAGQDLLQK----TNATDASGNPVLGDIGVHLQQEIKK 316 (411)
T ss_pred cCCCCEEEeCCCCCCcccHHHHHHHHHHHHhcCCcEEEEEecccccccccc----cccccccCCcccCcHHHHHHHHHHH
Confidence 933999999999999987789999999999988999999999997655432 1358999999999999999999999
Q ss_pred HhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEeCCeeeeeeHHHHHhhCCcCCCCh
Q 009394 412 HFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPFYRITERQNRVVITD 491 (535)
Q Consensus 412 ~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG~tG~mVgi~~~~~~~iPl~~v~~~~k~v~~~~ 491 (535)
+++ +.+..+++|+++|||+|||++|+++|+++|++||+.||+++++|+||+||+++++++.++||+++++.+|+|++++
T Consensus 317 ~~~-~~g~~~~~r~~~lGy~qRgg~p~a~Dr~la~~lG~~AV~~~~~G~sg~mV~l~~~~~~~vpl~~v~~~~k~vd~~~ 395 (411)
T PLN02884 317 HFK-DIGVPADVKYIDPTYMIRACRANASDAILCTVLGQNAVHGAFAGFSGITVGICNTHYVYLPIPEVIAYPRRVDPNS 395 (411)
T ss_pred Hhh-ccCCCceEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCEEEEEeHHHHhcCCCCCCCCc
Confidence 875 2233457899999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHHhcCCCCCC
Q 009394 492 RMWARLLSSTNQPSFL 507 (535)
Q Consensus 492 ~~w~~~l~~tgqp~f~ 507 (535)
++|+|+|++||||+|.
T Consensus 396 ~~~~~~~~~~gqp~~~ 411 (411)
T PLN02884 396 RMWHRCLTSTGQPDFH 411 (411)
T ss_pred HHHHHHHHhcCCCCCC
Confidence 9999999999999994
No 5
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=6.6e-90 Score=724.31 Aligned_cols=350 Identities=25% Similarity=0.428 Sum_probs=317.1
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHh--HH-hchhcccCcceeccCCCC-
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPK--IV-NGIHKRGGTILGTSRGGH- 221 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~--~V-~~i~~~GGs~LGTsR~~~- 221 (535)
+||||+||||||||||++||++++.+...+.+.+||||++||+||+++++++|++. .+ +.|+++|||+|||||++.
T Consensus 4 k~i~IltsGGdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~~~~~l~~~~~~~~~~i~~~GGt~LGtsR~~~~ 83 (403)
T PRK06555 4 KKVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGSPIGNSRVKLT 83 (403)
T ss_pred CEEEEECCCCCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCCCceeCChhHhhhhhHHHhCCCceeccCCCCcc
Confidence 59999999999999999999999977554456799999999999999999999986 44 459999999999999743
Q ss_pred ----------------cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccC
Q 009394 222 ----------------DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFG 285 (535)
Q Consensus 222 ----------------d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~G 285 (535)
++++++++|++++||+||+||||||+++|.+|++++.+++++|+||||||||||||++||+|||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~G 163 (403)
T PRK06555 84 NVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLG 163 (403)
T ss_pred ccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcC
Confidence 2689999999999999999999999999999999999888899999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhc-------------------CCccEEecCCCCCC
Q 009394 286 FDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIAS-------------------RDVDCCLIPESPFY 346 (535)
Q Consensus 286 FdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs-------------------~~ad~ilIPE~pf~ 346 (535)
||||+++++++|+++++||.||+|.++|||||||+|||||+++|||+ ++||+|||||.||+
T Consensus 164 f~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~aG~LAl~aalA~~~~~~~~~~~~~~~~~~~~~gad~ilIPE~~~~ 243 (403)
T PRK06555 164 AWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPEMAFD 243 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccCCchHHHHHHHHHhhccccccccccccccccccCCCCcEEEccCCCCC
Confidence 99999999999999999999998766667999999999999999992 37999999999999
Q ss_pred CCCcchHHHHHHHHHHhCCcEEEEEecCCCchhhHHHhhhc---ccccccCCccchh--hHHHHHHHHHHHhCCcceeEE
Q 009394 347 LEGPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIMHTM---DQQDASGNKLLQD--VGLWISQKIRDHFGKKRKMTI 421 (535)
Q Consensus 347 l~~~~~l~e~I~~rl~~~~~~vIVVaEGa~~~~~~~~~~~~---~~~Da~Gn~~l~~--ig~~L~~~I~~~~~~~~~~~~ 421 (535)
++ ++++.|++++++++|+|||||||+.+.+..+.+.+. ..+|++||++|++ ++.+|+++|+++++.+
T Consensus 244 ~e---~~~~~ik~~~~~k~~~iIvVaEG~~~~~~~~~~~~~g~~~~~Da~G~~~l~~~~~g~~la~~i~~~~g~e----- 315 (403)
T PRK06555 244 LE---AEAERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGHVKLDTINPGAWFAKQFAELLGAE----- 315 (403)
T ss_pred HH---HHHHHHHHHHHhCCCEEEEEeCCCCcccchhhhhhccCccccccccceecCCCcHHHHHHHHHHHHhCCC-----
Confidence 87 799999999988999999999999765544433222 2489999999986 6999999999998743
Q ss_pred EeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEE---eCCeeeeeeHHHHHhhCCcCCCChHHHHHHH
Q 009394 422 NLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAGYTGFTVGP---VNGRHAYIPFYRITERQNRVVITDRMWARLL 498 (535)
Q Consensus 422 ~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG~tG~mVgi---~~~~~~~iPl~~v~~~~k~v~~~~~~w~~~l 498 (535)
..|+++|||+|||++|+++|+++|++||..||+++++|+|| ||++ +||+++++||+++.. +|+++++.+||+++|
T Consensus 316 ~~r~~~lGy~qRgg~psa~Dr~la~~lG~~AV~~~~~G~sg-~v~~~~~~~g~~~~vp~~~~~~-~k~~~~~~~~~~~~~ 393 (403)
T PRK06555 316 KVMVQKSGYFARSAPANAEDLRLIKSMVDLAVECALRGVSG-VIGHDEEQGGKLRAIEFPRIKG-GKAFDTSTPWFTELL 393 (403)
T ss_pred ceEEecCChhhcCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-eEEEEeeeCCEEEEEEHHHHhc-CCCCCCCHHHHHHHH
Confidence 25578999999999999999999999999999999999999 6788 799999999999887 589999999999999
Q ss_pred HhcCCCC
Q 009394 499 SSTNQPS 505 (535)
Q Consensus 499 ~~tgqp~ 505 (535)
++||||.
T Consensus 394 ~~~~q~~ 400 (403)
T PRK06555 394 DEIGQPY 400 (403)
T ss_pred HhhCCCC
Confidence 9999996
No 6
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=9.9e-85 Score=681.22 Aligned_cols=331 Identities=29% Similarity=0.435 Sum_probs=301.3
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCC--CeeeCCHhHHhchhcccCcceeccCC-C-
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYAR--NTIPLTPKIVNGIHKRGGTILGTSRG-G- 220 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~--~~~~L~~~~V~~i~~~GGs~LGTsR~-~- 220 (535)
.+||||+||||||||||++||++++.+.+.++ .+||||++||+||+++ ++++|+|++|++|+++|||+|||||. .
T Consensus 4 ~~~I~IltsGG~apGmNa~i~~vv~~a~~~~g-~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~~ 82 (360)
T PRK14071 4 KKRIGILTSGGDCAGLNAVIRAVVHRARGTYG-WEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGTILGTTNKGDP 82 (360)
T ss_pred CCEEEEECCCCCchhHHHHHHHHHHHHHhcCC-CEEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCceeccCCCCCc
Confidence 46999999999999999999999998865445 5999999999999999 89999999999999999999999973 1
Q ss_pred -----------CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhH
Q 009394 221 -----------HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTA 289 (535)
Q Consensus 221 -----------~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTA 289 (535)
+++++++++|++++||+||+||||||+++|.+|++. ..|+||||||||||||++||+|||||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~-----~~i~vIgiPkTIDNDl~~td~t~Gf~TA 157 (360)
T PRK14071 83 FAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ-----GGINLVGIPKTIDNDVGATEVSIGFDTA 157 (360)
T ss_pred cccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh-----cCCcEEEecccccCCCcCcccCcChhHH
Confidence 236899999999999999999999999999999863 2578999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHh-CCcEE
Q 009394 290 VEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE-NGHMV 368 (535)
Q Consensus 290 v~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~-~~~~v 368 (535)
+++++++||+++++|.|| +||||||||||+|||||++++||+ +||+|||||.||+++ ++++.|++|+++ ++|++
T Consensus 158 ~~~~~~~id~i~~ta~s~-~rv~ivEvMGR~~G~LAl~~~la~-ga~~iliPE~~~~~~---~l~~~i~~~~~~~~~~~i 232 (360)
T PRK14071 158 VNIATEALDRLHFTAASH-NRVMILEVMGRDAGHIALAAGIAG-GADVILIPEIPYTLE---NVCKKIRERQEEGKNFCL 232 (360)
T ss_pred HHHHHHHHHHHHhhhccc-CCEEEEEECCCCccHHHHHhHhhc-CCCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEE
Confidence 999999999999999996 679999999999999999999999 799999999999987 799999999987 78999
Q ss_pred EEEecCCCchhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHH
Q 009394 369 IVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLL 448 (535)
Q Consensus 369 IVVaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~L 448 (535)
||||||+....- +. ...+|++||+++++++++|+++|+++++.+ .|+..|||+|||+.|+++||.+|++|
T Consensus 233 ivvsEG~~~~~g-~~---~~~~d~~g~~~~~~~~~~l~~~i~~~~g~~------~r~~~lG~~qRgg~ps~~Dr~~a~~l 302 (360)
T PRK14071 233 VVVSEAVRTEEG-EQ---VTKTQALGEDRYGGIGQYLAEQIAERTGAE------TRVTVLGHIQRGGIPSPRDRLLASAF 302 (360)
T ss_pred EEEcCCCccccc-cc---ccccccccccccCcHHHHHHHHHHHhcCCC------eeEEecChhhcCCCCChHHHHHHHHH
Confidence 999999964311 11 123799999999999999999999988754 44567999999999999999999999
Q ss_pred HHHHHHHHHcCCCceEEEEeCCeeeeeeHHHHHhhCCcCCCChHHHHH
Q 009394 449 AHSAIHGAMAGYTGFTVGPVNGRHAYIPFYRITERQNRVVITDRMWAR 496 (535)
Q Consensus 449 G~~AV~~a~aG~tG~mVgi~~~~~~~iPl~~v~~~~k~v~~~~~~w~~ 496 (535)
|..||+++++|+||+||+++++++.++||+++++.+|.|++++.+|.-
T Consensus 303 G~~Av~~~~~G~t~~mv~~~~~~~~~vpl~~v~~~~~~v~~~~~~~~~ 350 (360)
T PRK14071 303 GVAAVDLIAQGKFDRMVAWQNRQVVSVPIAEAIATYRAVDPEGTLVKT 350 (360)
T ss_pred HHHHHHHHHcCCCCEEEEEECCEEEEEeHHHHhcCCCCCCccHHHHHH
Confidence 999999999999999999999999999999999888999998877765
No 7
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=3.5e-84 Score=688.00 Aligned_cols=330 Identities=22% Similarity=0.349 Sum_probs=298.8
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhc---hhcccCcceeccCCCC
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNG---IHKRGGTILGTSRGGH 221 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~---i~~~GGs~LGTsR~~~ 221 (535)
.+||||+||||||||||++||++++.+....+..+||||++||+||+++++++|+..++++ |.++|||+|||||++.
T Consensus 3 ~k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~~~~~l~~~~~~~i~~i~~~gGt~LgssR~~~ 82 (416)
T PRK14072 3 KGNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDEDLIDLSKESDEALAALAHTPSGALGSCRYKL 82 (416)
T ss_pred CceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCCCeeeCChhhHhHHHHHhcCCCeEeccCCCCC
Confidence 3699999999999999999999999886543448999999999999999999999887777 8999999999999853
Q ss_pred --------cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHH
Q 009394 222 --------DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEA 293 (535)
Q Consensus 222 --------d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~ 293 (535)
++++++++|++++||+||+|||||||++|++|+++++++|.+++||||||||||||++||+|||||||++++
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~~i 162 (416)
T PRK14072 83 KSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAKYI 162 (416)
T ss_pred cccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHHHH
Confidence 478999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred HHHHHHH----HhhhhcCcceEEEEEecCCCccHHHHHHhHh-----cCCccEEecCCCCCCCCCcchHHHHHHHHHHhC
Q 009394 294 QRAISAA----HVEAESFENGIGVVKLMGRYSGFIAMYATIA-----SRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN 364 (535)
Q Consensus 294 ~~ai~~i----~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLA-----s~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~ 364 (535)
+++|+++ ++++.|| ||||||||||+|||||+++||| + +||+|||||.||+++ ++++.|+++++++
T Consensus 163 ~~ai~~l~~D~~~ta~s~--Rv~iVEvMGR~aG~LAl~a~lA~~~~~~-gad~iliPE~~~~~~---~~~~~i~~~~~~~ 236 (416)
T PRK14072 163 ATSVLEAALDVAAMANTS--KVFILEVMGRHAGWLAAAAALAKQNPDD-APHLIYLPERPFDEE---KFLADVRAIVKRY 236 (416)
T ss_pred HHHHHHHHHHHHhcccCc--eEEEEEEeCcchhHHHHHHhhccccCCC-CccEEEccCCCCCHH---HHHHHHHHHHHhC
Confidence 9999999 5555554 8999999999999999999999 6 799999999999987 8999999999889
Q ss_pred CcEEEEEecCCCch---hhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCC--CCc
Q 009394 365 GHMVIVIAEGAGQE---LLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVP--SNA 439 (535)
Q Consensus 365 ~~~vIVVaEGa~~~---~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~--p~a 439 (535)
+|+|||||||+... ++.+. ...+|++||+++++++++|+++|+++++. .+|+..|||+|||++ |++
T Consensus 237 ~~~ivvVaEG~~~~~g~~i~e~---~~~~D~~gh~~l~g~~~~La~~i~~~~g~------~~R~~~LG~~QRgg~~~ps~ 307 (416)
T PRK14072 237 GYCVVVVSEGIRDADGKFIAEA---GLAEDAFGHAQLGGVAPVLANLIKEKLGK------KVHWAVLDYLQRAARHIASK 307 (416)
T ss_pred CCeEEEEecCcccccccchhcc---ccccCCCCCcccccHHHHHHHHHHHHhCC------eEEEEeCChhhhCCCCCCCH
Confidence 99999999998532 22111 12369999999999999999999999874 456789999999999 999
Q ss_pred chHHHHHHHHHHHHHHHHcCCCceEEEEeCC-------eeeeeeHHHHHhhCCcCCC
Q 009394 440 SDNVYCTLLAHSAIHGAMAGYTGFTVGPVNG-------RHAYIPFYRITERQNRVVI 489 (535)
Q Consensus 440 ~Dr~~a~~LG~~AV~~a~aG~tG~mVgi~~~-------~~~~iPl~~v~~~~k~v~~ 489 (535)
+||+||++||..||+++++|+||+||+++++ ++..+||++++++.|++++
T Consensus 308 ~Dr~~a~~lG~~AV~~~~~G~~g~mv~l~~~~~~~y~~~~~~vpl~~v~~~~k~v~~ 364 (416)
T PRK14072 308 TDVEEAYAVGKAAVEYALAGKNGVMPAIRRTSDDPYKWKIGLVPLSKVANKEKKMPP 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCceEEEEcCCCCcceeEEEcccHHHHHhhcCcCCH
Confidence 9999999999999999999999999999998 8999999999987677664
No 8
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=8.4e-84 Score=665.86 Aligned_cols=316 Identities=36% Similarity=0.570 Sum_probs=290.2
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeC-CHhHHhchhcccCcceeccCCCC----
Q 009394 147 HACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPL-TPKIVNGIHKRGGTILGTSRGGH---- 221 (535)
Q Consensus 147 ~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L-~~~~V~~i~~~GGs~LGTsR~~~---- 221 (535)
|||||||||||||||++||++++.+.+.++ .+||||++||+||+++++++| +|++|++|.++|||+|||||+..
T Consensus 1 ~IgIltsGG~apGmN~~i~~~v~~a~~~~g-~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt~LgtsR~~~~~~~ 79 (324)
T TIGR02483 1 RIGVLTGGGDCPGLNAVIRGVVRRAIAEYG-WEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGTILGSSRTNPFKYE 79 (324)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHcCC-ceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCccccCCCCCccccC
Confidence 699999999999999999999998764344 599999999999999999999 99999999999999999999842
Q ss_pred --cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHH
Q 009394 222 --DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISA 299 (535)
Q Consensus 222 --d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~ 299 (535)
++++++++|++++||+||+||||||+++|++|++ .+ ++||||||||||||++||+|||||||+++++++|++
T Consensus 80 ~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~----~g--i~vigiPkTIDNDl~gtd~tiGfdTA~~~~~~~i~~ 153 (324)
T TIGR02483 80 EDGDDKIVANLKELGLDALIAIGGDGTLGIARRLAD----KG--LPVVGVPKTIDNDLEATDYTFGFDTAVEIATEALDR 153 (324)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHh----cC--CCEEeeccccCCCCcCCccCcCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999986 24 889999999999999999999999999999999999
Q ss_pred HHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHh-CCcEEEEEecCCCch
Q 009394 300 AHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE-NGHMVIVIAEGAGQE 378 (535)
Q Consensus 300 i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~-~~~~vIVVaEGa~~~ 378 (535)
+++||.|+ +||||||+|||+|||||+++|||+ +||+|||||+||+++ ++++.|++|+++ ++|++||||||+...
T Consensus 154 i~~ta~S~-~r~~ivEvMGR~~G~LAl~~ala~-~a~~iliPE~~~~~~---~l~~~v~~~~~~g~~~~vvvvsEG~~~~ 228 (324)
T TIGR02483 154 LHTTAESH-HRVMVVEVMGRHAGWIALHSGIAG-GADVILIPEIPFDID---SVCEKVRERFARGKRFAIVVVAEGAKPK 228 (324)
T ss_pred HHHHHhhc-CCEEEEEEcCCChhHHHHHHHhcc-CCCEEEecCCCCCHH---HHHHHHHHHHHhCCCceEEEEecCcccc
Confidence 99999997 579999999999999999999999 899999999999987 799999999988 799999999999754
Q ss_pred hhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHc
Q 009394 379 LLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMA 458 (535)
Q Consensus 379 ~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~a 458 (535)
+.... .....+|++||+++++++++|+++|+++++. ..|...|||+|||+.|+++||.+|++||..||+++++
T Consensus 229 ~~~~~-~~~~~~d~~gh~~~~~~~~~l~~~i~~~~g~------~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~ 301 (324)
T TIGR02483 229 GGEMV-VQEGVKDAFGHVRLGGIGNWLAEEIERRTGI------ETRATVLGHLQRGGSPSAFDRVLATRFGVAAVDLVHE 301 (324)
T ss_pred ccchh-ccccccccccCcccCcHHHHHHHHHHHhcCC------cceECCcChhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 43322 1234589999999999999999999998874 3566789999999999999999999999999999999
Q ss_pred CCCceEEEEeCCeeeeeeHHHHH
Q 009394 459 GYTGFTVGPVNGRHAYIPFYRIT 481 (535)
Q Consensus 459 G~tG~mVgi~~~~~~~iPl~~v~ 481 (535)
|+||.||++++++++++||++++
T Consensus 302 g~~~~mv~~~~~~~~~~p~~~~~ 324 (324)
T TIGR02483 302 GQFGHMVALRGTDIVYVPIAEAV 324 (324)
T ss_pred CCCCeEEEEECCEEEEeeHHHhC
Confidence 99999999999999999999863
No 9
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=3.2e-83 Score=665.38 Aligned_cols=325 Identities=30% Similarity=0.414 Sum_probs=299.9
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCC----
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGH---- 221 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~---- 221 (535)
+||||+||||||||||++||++++.+.+ ++ .+||||++||+||+++++++|+|+.+++|+++|||+|||||++.
T Consensus 1 ~ri~Il~sGG~apG~N~~i~~~v~~~~~-~g-~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~ 78 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIA-EG-LEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTIIGSARCKEFRTE 78 (338)
T ss_pred CeEEEEccCCCchhHHHHHHHHHHHHHH-CC-CEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCeecccCCCCccCCH
Confidence 4899999999999999999999998865 44 79999999999999999999999999999999999999999753
Q ss_pred -cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHH
Q 009394 222 -DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAA 300 (535)
Q Consensus 222 -d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 300 (535)
++++++++|++++||+||+||||||+++|.+|++++++++.+++|||||||||||+++||+|||||||+++++++|+++
T Consensus 79 ~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~~~~~~i~~l 158 (338)
T cd00363 79 EGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRI 158 (338)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHh-CCcEEEEEecCCCchh
Q 009394 301 HVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE-NGHMVIVIAEGAGQEL 379 (535)
Q Consensus 301 ~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~-~~~~vIVVaEGa~~~~ 379 (535)
+++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++.++.+++.|++|+++ ++|++||||||+.+..
T Consensus 159 ~~~a~s~-~rv~ivEvMGR~~G~Lal~~ala~-~ad~iliPE~~~~~~~~~~~~~~i~~r~~~~~~~~vivvsEG~~~~~ 236 (338)
T cd00363 159 RDTASSH-QRTFVVEVMGRHCGDIALEAGLAT-GADIIFIPEEPAADEWEEEMVDVIKKRRERGKRHGIVIVAEGAIDFI 236 (338)
T ss_pred HHhcccC-CCEEEEEECCcCHHHHHHHHHHHh-CCCEEEeCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCCCcccc
Confidence 9999995 689999999999999999999999 799999999999766677999999999987 7899999999996422
Q ss_pred hHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcC
Q 009394 380 LSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAG 459 (535)
Q Consensus 380 ~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG 459 (535)
|+. ..+.+|+++|+++++. +.|+..|||+|||++|+++||.+|++||..||+++++|
T Consensus 237 --------------~~~---~~~~~l~~~i~~~~~~------~~r~~~lGy~qRg~~ps~~D~~~a~~lG~~Av~~~~~g 293 (338)
T cd00363 237 --------------PKP---ITEKLLAKLVEERLGF------DTRATVLGHVQRGGTPTAFDRILASRLGAEAVELLLEG 293 (338)
T ss_pred --------------ccC---chHHHHHHHHHHHcCC------ceEEeecCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Confidence 111 2356899999998864 45677899999999999999999999999999999999
Q ss_pred CCceEEEEeCC---eeeeeeHHHHHhhCCc--CCCChHHHHHH
Q 009394 460 YTGFTVGPVNG---RHAYIPFYRITERQNR--VVITDRMWARL 497 (535)
Q Consensus 460 ~tG~mVgi~~~---~~~~iPl~~v~~~~k~--v~~~~~~w~~~ 497 (535)
+||+||+++++ ++.++||+++++.+|+ |++++++|+-.
T Consensus 294 ~tg~mv~~~~~~~~~~~~vpl~~~~~~~~~~~~~~~~~~~~~~ 336 (338)
T cd00363 294 TGGTPVGIQNLNENQVVRHPLTEAVNMTKRVGVDLEGRPFKKF 336 (338)
T ss_pred CCCcEEEEECCccCEEEEecHHHHHhhhcccccCCChHHHHHh
Confidence 99999999999 9999999999999998 78999888754
No 10
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=3e-82 Score=652.40 Aligned_cols=307 Identities=31% Similarity=0.456 Sum_probs=280.7
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCC-----
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGG----- 220 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~----- 220 (535)
+||||+||||||||||++||++++.+.+ + +.+|||+++||+||+++++++|+|+.+++|+++|||+|||||+.
T Consensus 1 ~~IaIltsGG~apGmNa~i~~vv~~a~~-~-g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~ 78 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAIA-E-GLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLGSARFPEFKDE 78 (317)
T ss_pred CEEEEEccCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCeeeccCCCCccCCH
Confidence 4899999999999999999999998854 3 46999999999999999999999999999999999999999984
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHH
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAA 300 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 300 (535)
+++++++++|++++||+||+||||||+++|++|+++ + ++||||||||||||++||+|||||||+++++++|+++
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~----~--i~vigiPkTIDNDi~gtd~t~Gf~TA~~~~~~~i~~i 152 (317)
T cd00763 79 EGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH----G--FPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRI 152 (317)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc----C--CCEEEecccccCCCCCCccCCCHHHHHHHHHHHHHHH
Confidence 247899999999999999999999999999999874 4 7899999999999999999999999999999999999
Q ss_pred HhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHh-CCcEEEEEecCCCchh
Q 009394 301 HVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE-NGHMVIVIAEGAGQEL 379 (535)
Q Consensus 301 ~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~-~~~~vIVVaEGa~~~~ 379 (535)
+++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++ ++++.|++++++ ++|++||||||+..
T Consensus 153 ~~ta~s~-~rv~ivEvMGR~~G~LA~~~ala~-ga~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~vivvaEG~~~-- 225 (317)
T cd00763 153 RDTSSSH-QRISVVEVMGRHCGDIALAAGIAG-GAEFIVIPEAEFDRE---EVANRIKAGIERGKKHAIVVVAEGVYD-- 225 (317)
T ss_pred HHHHhcC-CCEEEEEeCCCChHHHHHHHHHHc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCCCC--
Confidence 9999996 589999999999999999999999 799999999999987 899999999987 78999999999852
Q ss_pred hHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcC
Q 009394 380 LSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAG 459 (535)
Q Consensus 380 ~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG 459 (535)
...|++.|+++++.+ .|+..|||+|||++|+++||.+|++||..||+++++|
T Consensus 226 ----------------------~~~l~~~l~~~~g~~------~r~~~lG~~qRgg~p~~~Dr~~a~~lg~~Av~~~~~g 277 (317)
T cd00763 226 ----------------------VDELAKEIEEATGFE------TRATVLGHIQRGGSPTAFDRILASRMGAYAVELLLAG 277 (317)
T ss_pred ----------------------HHHHHHHHHHHhCCC------cceeccchhhcCCCCChhhHHHHHHHHHHHHHHHHcC
Confidence 124677788877643 4556799999999999999999999999999999999
Q ss_pred CCceEEEEeCCeeeeeeHHHHHhhCCcCCCChHHHHHHH
Q 009394 460 YTGFTVGPVNGRHAYIPFYRITERQNRVVITDRMWARLL 498 (535)
Q Consensus 460 ~tG~mVgi~~~~~~~iPl~~v~~~~k~v~~~~~~w~~~l 498 (535)
++|+||+++++++.++||+++.+.+|++++ .|.++.
T Consensus 278 ~~~~mv~~~~~~~~~~pl~~~~~~~k~~~~---~~~~~~ 313 (317)
T cd00763 278 KGGLAVGIQNEQLVHHDIIDAIENMKPFKK---DWLALA 313 (317)
T ss_pred CCCeEEEEECCEEEEecHHHHhhCCCCCCH---HHHHHH
Confidence 999999999999999999999988777776 555553
No 11
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=6.6e-82 Score=645.56 Aligned_cols=294 Identities=33% Similarity=0.515 Sum_probs=270.7
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCC-----C
Q 009394 147 HACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGG-----H 221 (535)
Q Consensus 147 ~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-----~ 221 (535)
||||+||||||||||++||++++.+.+ + +.+|||+++||+||+++++++|+|+.+++|+++|||+|||||+. +
T Consensus 1 rIaIltsGG~apG~Na~i~~vv~~a~~-~-g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~ 78 (301)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAIY-H-GFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTILGTARCPEFKTEE 78 (301)
T ss_pred CEEEEccCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCceeccCCCCccCCHH
Confidence 699999999999999999999998864 4 46999999999999999999999999999999999999999974 2
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHHH
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAH 301 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~ 301 (535)
++++++++|++++||+||+||||||+++|++|+++ ++++||||||||||||++||+|||||||+++++++|++++
T Consensus 79 ~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~-----~~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~i~ 153 (301)
T TIGR02482 79 GRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEE-----GGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIR 153 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHh-----hCCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999986 3588999999999999999999999999999999999999
Q ss_pred hhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHh-CCcEEEEEecCCCchhh
Q 009394 302 VEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE-NGHMVIVIAEGAGQELL 380 (535)
Q Consensus 302 ~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~-~~~~vIVVaEGa~~~~~ 380 (535)
++|.|+ +||||||+|||+|||||+++|||+ +||+|||||+||+++ +++++|++|+++ ++|++||||||+..
T Consensus 154 ~ta~s~-~rv~ivEvMGR~~G~lAl~~~la~-gad~iliPE~~~~~~---~l~~~i~~r~~~g~~~~iIvvaEG~~~--- 225 (301)
T TIGR02482 154 DTATSH-ERAFVIEVMGRHAGDLALYSGIAT-GAEIIIIPEFDYDID---ELIQRLKEQHEAGKKHSIIIVAEGNIV--- 225 (301)
T ss_pred HHhhcC-CCEEEEEeCCCCHHHHHHHHHHHc-CCCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEEEEEeCCCcC---
Confidence 999997 579999999999999999999999 799999999999987 899999999987 78999999999531
Q ss_pred HHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCC
Q 009394 381 SEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAGY 460 (535)
Q Consensus 381 ~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG~ 460 (535)
| .+..|+++|+++++. ++|+..|||+|||++|+++||.+|++||..||+++++|+
T Consensus 226 -------------~------~~~~l~~~l~~~~g~------~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~ 280 (301)
T TIGR02482 226 -------------G------SAKEVAKKIEEATGI------ETRVTVLGHTQRGGSPTAFDRVLASRLGAKAVELLLEGK 280 (301)
T ss_pred -------------C------cHHHHHHHHHHhcCC------eeEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 0 023578888877653 456778999999999999999999999999999999999
Q ss_pred CceEEEEeCCeeeeeeHHHH
Q 009394 461 TGFTVGPVNGRHAYIPFYRI 480 (535)
Q Consensus 461 tG~mVgi~~~~~~~iPl~~v 480 (535)
+|+||++++++++++||+++
T Consensus 281 ~~~mv~~~~~~~~~~p~~~~ 300 (301)
T TIGR02482 281 GGVMIGIQNNKIVTHPIEEA 300 (301)
T ss_pred CCEEEEEECCEEEEeeHHHh
Confidence 99999999999999999986
No 12
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=4.8e-82 Score=709.45 Aligned_cols=398 Identities=21% Similarity=0.267 Sum_probs=346.8
Q ss_pred cccccchhhhccCCCCCCCCCCCCCccccccccccccChhHHHHHhhccc-----CCccccccccC----------Cccc
Q 009394 74 LEDVPHFSDYISDLPTHPNPLQDNPSYSVVKQHFVDVDDSVAQNIVVHQD-----SPRGRHFRRVG----------PREK 138 (535)
Q Consensus 74 ~e~V~~l~~~~p~~p~~~~pl~~n~~~~~~~~~~V~~t~~V~~~~~~~~~-----~~r~~~f~~ag----------pr~~ 138 (535)
.+||.+|++..+++|.+++.+++|+....|++++++.++.|..++.. ++ .+|+++|.+++ ++..
T Consensus 303 ~~Av~~~~~g~~~~~~~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~~-~~~~~a~~~r~~~f~~~~~~~~~~~~~~~~~~ 381 (745)
T TIGR02478 303 VEAVLAVLESTPETPSPVISLRGNKIVRKPLVEAVAQTKTVAKAIKE-KRFAEAMRLRGREFVENLATFLFLSIPDQDKK 381 (745)
T ss_pred HHHHHHHHcCCCCCCCEEEEEECCEEEEEeHHHHHhhcCCCCHHHHh-ccHHHHHHhcCHHHHHHHHHHHhhhccCCccc
Confidence 67899999999999999999999999999999999999999988763 33 67999998765 2333
Q ss_pred ccc-CCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceecc
Q 009394 139 VYF-ESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTS 217 (535)
Q Consensus 139 ~~~-~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTs 217 (535)
..+ ..+++||||+||||||||||++||++++.+.. .+++||||++||+||+++++.+|+|.+|++|+++|||+|||+
T Consensus 382 ~~~~~~~~~rIaIltsGG~apGmNaair~vv~~a~~--~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~Lgts 459 (745)
T TIGR02478 382 LVPSKASRLRIAIIHVGAPAGGMNAATRSAVRYAIA--RGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGSELGTN 459 (745)
T ss_pred cCCCCCCceEEEEEecCCCchhHHHHHHHHHHHHHh--CCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCcccccC
Confidence 333 35568999999999999999999999998753 357999999999999999999999999999999999999999
Q ss_pred CCC--CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc-CCCeeEeeeccccccCccCCCcccCchhHHHHHH
Q 009394 218 RGG--HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR-GLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQ 294 (535)
Q Consensus 218 R~~--~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~ 294 (535)
|+. +++++++++|++++||+||+||||||+++|.+|+++..++ ++.|+||||||||||||++||+|||||||+++++
T Consensus 460 R~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~~~~ 539 (745)
T TIGR02478 460 RELPGKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNEIT 539 (745)
T ss_pred CCCchhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHHHHH
Confidence 984 4799999999999999999999999999999999885544 4679999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhC--CcEEEEEe
Q 009394 295 RAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN--GHMVIVIA 372 (535)
Q Consensus 295 ~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~--~~~vIVVa 372 (535)
++||+++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++++.++++++.+|++.. .+.+|+++
T Consensus 540 ~~id~i~~ta~s~~~rv~iVEvMGR~~G~LAl~~alA~-gad~iliPE~~~~~~~l~~~v~~i~~~~~~~~~~~~iiv~~ 618 (745)
T TIGR02478 540 EYCDNIKQSASASKRRVFVVETMGGYSGYLATMAGLAT-GADAAYIPEEGISLKDLQEDIEHLKEKFAHGNRAGKLILRN 618 (745)
T ss_pred HHHHHHHHhhHhcCCcEEEEEecCccccHHHHHHHhhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 99999999999988899999999999999999999999 7999999999999986555666888888763 68999999
Q ss_pred cCCCchhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHH
Q 009394 373 EGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSA 452 (535)
Q Consensus 373 EGa~~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~A 452 (535)
||+...+. ...|++.|+++.+. + +.+|+.+|||+|||++|+++||++|++||..|
T Consensus 619 Eg~~~~~~---------------------~~~l~~~i~~e~~~--~--~~~R~~~LG~~QRgg~ps~~Dr~~a~~lG~~A 673 (745)
T TIGR02478 619 ENASKNYT---------------------TDFIARIISEEAKG--R--FDARTAVLGHMQQGGSPSPFDRNRATRLAIRA 673 (745)
T ss_pred CCCccCCC---------------------HHHHHHHHHHHhcC--C--CceEeccCCccccCCCCCHHHHHHHHHHHHHH
Confidence 99843221 23577777655431 1 35788999999999999999999999999999
Q ss_pred HHHHHcC------------CCceEEEEeCCeeeeeeHHHHHhhC---CcCCCChHHHHHHHHh
Q 009394 453 IHGAMAG------------YTGFTVGPVNGRHAYIPFYRITERQ---NRVVITDRMWARLLSS 500 (535)
Q Consensus 453 V~~a~aG------------~tG~mVgi~~~~~~~iPl~~v~~~~---k~v~~~~~~w~~~l~~ 500 (535)
|+++++| .+|.|||+++++++++||+++.+.. .+-.|...||..+...
T Consensus 674 v~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~p~~~~~~~~~d~~~r~p~~~~w~~~~~~ 736 (745)
T TIGR02478 674 VDFIEEKIKKSADKLGADDTSAVVIGIRGSNVLFTPVKGLLAKETDFEHRRPKNQWWLDLRPL 736 (745)
T ss_pred HHHHHhCCcccccccccCCCccEEEEEECCEEEEEEHHHHHhhccCcccCCCCCchhhhHHHH
Confidence 9999998 7999999999999999999855432 2333667799877554
No 13
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.4e-80 Score=640.71 Aligned_cols=308 Identities=31% Similarity=0.448 Sum_probs=281.8
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCC----
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGH---- 221 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~---- 221 (535)
+||||+||||||||||++||++++.+.. . +.+||||++||+||+++++++|+|+.|++|.++|||+|||||+..
T Consensus 2 k~i~Il~sGG~apG~Na~i~~~~~~~~~-~-g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~ 79 (320)
T PRK03202 2 KRIGVLTSGGDAPGMNAAIRAVVRTAIS-E-GLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTILGSARFPEFKDE 79 (320)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHHH-C-CCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcccccCCCCCcCCH
Confidence 4899999999999999999999998864 3 469999999999999999999999999999999999999999742
Q ss_pred -cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHH
Q 009394 222 -DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAA 300 (535)
Q Consensus 222 -d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 300 (535)
++++++++|++++||+||+||||||+++|++|+++ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 80 ~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~------~i~vigiPkTIDNDl~gtd~s~Gf~TA~~~~~~~i~~l 153 (320)
T PRK03202 80 EGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------GIPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRL 153 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhc------CCcEEEecccccCCCCCCccCcCHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999863 57899999999999999999999999999999999999
Q ss_pred HhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHh-CCcEEEEEecCCCchh
Q 009394 301 HVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE-NGHMVIVIAEGAGQEL 379 (535)
Q Consensus 301 ~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~-~~~~vIVVaEGa~~~~ 379 (535)
+++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++ ++++.|++|+++ ++|++||||||+.+.
T Consensus 154 ~~~a~s~-~rv~iVEvMGR~~G~LAl~~ala~-~a~~iliPE~~~~~~---~l~~~i~~r~~~g~~~~vivvsEg~~~~- 227 (320)
T PRK03202 154 RDTASSH-ERVFIVEVMGRHAGDLALHAGIAG-GAEVILIPEVPFDIE---ELCAKIKKGRERGKKHAIIVVAEGVMPA- 227 (320)
T ss_pred HHHHhcc-CCEEEEEECCCChHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHhcCCcEEEEEeCCCCCH-
Confidence 9999997 579999999999999999999999 799999999999987 899999999987 799999999999641
Q ss_pred hHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcC
Q 009394 380 LSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAG 459 (535)
Q Consensus 380 ~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG 459 (535)
..|++.|+++++. ++|+..|||+|||++|+++||.+|++||..||+++++|
T Consensus 228 -----------------------~~l~~~i~~~~~~------~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g 278 (320)
T PRK03202 228 -----------------------EELAKEIEERTGL------ETRVTVLGHIQRGGSPTAFDRVLASRMGAHAVELLLEG 278 (320)
T ss_pred -----------------------HHHHHHHHHHhCC------ceEEcccchhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 2378888888763 45788999999999999999999999999999999999
Q ss_pred CCceEEEEeCCeeeeeeHHHHH-hhCCcCCCChHHHHHHHH
Q 009394 460 YTGFTVGPVNGRHAYIPFYRIT-ERQNRVVITDRMWARLLS 499 (535)
Q Consensus 460 ~tG~mVgi~~~~~~~iPl~~v~-~~~k~v~~~~~~w~~~l~ 499 (535)
++|+||+++++++.++||++++ +++|.++. .|.++..
T Consensus 279 ~~~~~v~~~~~~~~~vpl~~v~~~~~~~~~~---~~~~~~~ 316 (320)
T PRK03202 279 KGGRMVGIQNNKIVHVPIEEAVENMKHPFDK---DLYELAK 316 (320)
T ss_pred CCCeEEEEECCEEEEEeHHHHHhcCCCCCCH---HHHHHHH
Confidence 9999999999999999999999 65666555 5555543
No 14
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=4.7e-81 Score=699.24 Aligned_cols=395 Identities=20% Similarity=0.232 Sum_probs=342.3
Q ss_pred cccccchhhhccCCCCCCCCCCCCCccccccccccccChhHHHHHhhc----ccCCccccccccC--------Ccccccc
Q 009394 74 LEDVPHFSDYISDLPTHPNPLQDNPSYSVVKQHFVDVDDSVAQNIVVH----QDSPRGRHFRRVG--------PREKVYF 141 (535)
Q Consensus 74 ~e~V~~l~~~~p~~p~~~~pl~~n~~~~~~~~~~V~~t~~V~~~~~~~----~~~~r~~~f~~ag--------pr~~~~~ 141 (535)
.+||.+|++.+|++|.+++.+++|+..++|++++|+.|+.|+++|... ...+|+.+|.+++ ++.....
T Consensus 306 ~~AV~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~~k~v~~~~~~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~~~~~ 385 (762)
T cd00764 306 VEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDVQKAMDEKRFDEAAALRGKSFDKNWNLYKLLAIELPQPLP 385 (762)
T ss_pred HHHHHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhhccchhhhhhhhhHHHHHHhcchhHHHHHHHHHhccccCCccCC
Confidence 689999999999999999999999999999999999999999998742 2368999999876 2222223
Q ss_pred CCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCC-
Q 009394 142 ESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGG- 220 (535)
Q Consensus 142 ~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~- 220 (535)
+.+++||||+||||||||||++||++|+.+.. .+++||||++||+||+++++++|+|.+|++|+++|||+|||+|+.
T Consensus 386 ~~~~~~IaIltsGG~apGmNaairavv~~a~~--~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LGT~R~~~ 463 (762)
T cd00764 386 EKTNLNIAIVNVGAPAAGMNAAVRSAVRYGLA--HGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSELGTKRTLP 463 (762)
T ss_pred cccccEEEEEecCCCchhHHHHHHHHHHHHHH--CCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccccccCCCc
Confidence 44558999999999999999999999997753 468999999999999999999999999999999999999999984
Q ss_pred -CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc-CCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHH
Q 009394 221 -HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR-GLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAIS 298 (535)
Q Consensus 221 -~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~ 298 (535)
+++++++++|++++||+||+||||||+++|++|++++.++ .+.|+||||||||||||++||+|||||||+|+++++||
T Consensus 464 ~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln~~~~~id 543 (762)
T cd00764 464 KKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNALMKYCD 543 (762)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999887654 37799999999999999999999999999999999999
Q ss_pred HHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHh-----CCcEEEEEec
Q 009394 299 AAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE-----NGHMVIVIAE 373 (535)
Q Consensus 299 ~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~-----~~~~vIVVaE 373 (535)
+++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++.+.+.++++.+++++ +.+.++++||
T Consensus 544 ~i~~tA~s~~~RvfVVEvMGR~~G~LA~~aglA~-GAd~i~iPE~~~~~~~l~~dv~~l~~~~~~~~~~g~~~~~~~~se 622 (762)
T cd00764 544 RIKQSASGTKRRVFIVETMGGYCGYLATMTGLAV-GADAAYVFEEPFNIRDLQENVEHLTEKMKTTIGRGLVLRNEKCNE 622 (762)
T ss_pred HHHHHHhhcCCeEEEEEeCCCCccHHHHHHHhhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEeeeeeec
Confidence 9999999988899999999999999999999999 799999999999999766667777777654 2467899999
Q ss_pred CCCchhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHH
Q 009394 374 GAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAI 453 (535)
Q Consensus 374 Ga~~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV 453 (535)
|+.... ++..++++++.. ++.|...|||+|||+.|+++||++|++||.+||
T Consensus 623 ~~~~~~---------------------~~~~~~~~~~~~--------~~~R~~vLGh~QrGG~Ps~~DR~latr~g~~Av 673 (762)
T cd00764 623 NYTTVF---------------------TYELYSEEGKGV--------FDCRTNVLGHVQQGGAPSPFDRNFGTKFAVKAM 673 (762)
T ss_pred CCcccc---------------------HHHHHHHHHhcC--------CceEecccccccCCCCCCHHHHHHHHHHHHHHH
Confidence 974211 233455555431 456778999999999999999999999999999
Q ss_pred HHHHcCC---------------CceEEEEeCCeeeeeeHHHHHhhC-CcCCCChHHHHHHHHh
Q 009394 454 HGAMAGY---------------TGFTVGPVNGRHAYIPFYRITERQ-NRVVITDRMWARLLSS 500 (535)
Q Consensus 454 ~~a~aG~---------------tG~mVgi~~~~~~~iPl~~v~~~~-k~v~~~~~~w~~~l~~ 500 (535)
+++.+.. +..++|++++++.+.|+.++.+.. .+-.|...||..+...
T Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~r~p~~~~w~~~~~~ 736 (762)
T cd00764 674 KWIEQKLKENYAAGNEFANDPDFNCVNGVKKYAVLFEPVEELKQTTFEHRIPKEQWWLSLRPL 736 (762)
T ss_pred HHHHHhhhhhhcccccccCCCCceEEEEEeCCEEEEeeHHHHHHhhhhcCCCcchhhHhHHHH
Confidence 9998842 789999999999999998877633 2333667799876544
No 15
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-78 Score=628.19 Aligned_cols=310 Identities=33% Similarity=0.469 Sum_probs=272.5
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCC---
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGH--- 221 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~--- 221 (535)
.+||||+||||||||||+|||++|+++... +.+||||++||+||+++++++|+|++|++|+++|||+|||+|+++
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~--g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~~ 79 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKE--GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKT 79 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHc--CCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCccc
Confidence 469999999999999999999999998753 689999999999999999999999999999999999999999853
Q ss_pred --cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHH
Q 009394 222 --DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISA 299 (535)
Q Consensus 222 --d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~ 299 (535)
..++++++|++++||+|++||||||+++|+.|+|+. .++|||||||||||+++||+|||||||+++++++|++
T Consensus 80 ~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid~ 154 (347)
T COG0205 80 EEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDN 154 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhc-----CCcEEecCCCccCCCcccccCccHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999873 3789999999999999999999999999999999999
Q ss_pred HHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHH--hCCcEEEEEecCCCc
Q 009394 300 AHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLK--ENGHMVIVIAEGAGQ 377 (535)
Q Consensus 300 i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~--~~~~~vIVVaEGa~~ 377 (535)
++.+++|| +|+||||||||+|||||++||||+ +||+|+|||.+|++ .+++++..++++.+ .++|++|+|+||+.+
T Consensus 155 l~dtassh-~r~~iveVMGR~aG~lAl~aglA~-~a~~ilipE~~~~~-~i~~~~~~i~~~~~~~gk~~~iIvvaEG~~~ 231 (347)
T COG0205 155 LRDTASSH-ERIFIVEVMGRHAGWLALAAGLAT-GADIILIPEEPADL-IIEELIAEIKAKREARGKKHAIIVVAEGAID 231 (347)
T ss_pred HHHHHhCc-CCEEEEEecCcChhHHHHHHHHhc-CCCEEEecCccccc-hHHHHHHHHHHHHHHhCCCceEEEEcccccc
Confidence 99888775 689999999999999999999999 79999999999987 23367777776443 358999999999975
Q ss_pred hhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHH
Q 009394 378 ELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAM 457 (535)
Q Consensus 378 ~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~ 457 (535)
.+. .+|+..+..+.+++... . .++|...|||+|||++|+++||+||++||..||++++
T Consensus 232 ~~~-----------~~~~~~~~~i~~~~~~~---------~--~~~r~t~LGhiqRgg~p~~fDr~~a~~lG~~AV~~l~ 289 (347)
T COG0205 232 QIG-----------ENGAELLAAIEELLALG---------D--FETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVDLLL 289 (347)
T ss_pred ccc-----------cchhhHHHHHHHHhhhc---------c--cceEEEeccccccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 431 14444444433333322 0 3567778999999999999999999999999999999
Q ss_pred cCCCceEEEEeCCeeeeeeHHHHHhhCCc
Q 009394 458 AGYTGFTVGPVNGRHAYIPFYRITERQNR 486 (535)
Q Consensus 458 aG~tG~mVgi~~~~~~~iPl~~v~~~~k~ 486 (535)
+|++|+||+++|+++++.|+.+.....+.
T Consensus 290 ~g~~~~~v~i~~~~~v~~~~~~~~~~~~~ 318 (347)
T COG0205 290 EGKTGYMVGIRNNKIVHVPIDEAVAPLKM 318 (347)
T ss_pred cCCCCceEEEeCCeeEeehhHhhhhhhhh
Confidence 99999999999999999999988776554
No 16
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=8.2e-78 Score=654.21 Aligned_cols=341 Identities=25% Similarity=0.363 Sum_probs=296.1
Q ss_pred CCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCc-ceeccCCC-
Q 009394 143 SDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGT-ILGTSRGG- 220 (535)
Q Consensus 143 ~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs-~LGTsR~~- 220 (535)
++.+||||++|||||||||++|+++++++...+++.+||||++||+||+++++++|+++.|++|+++||+ +|||||++
T Consensus 65 ~~~~rIgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~ 144 (539)
T TIGR02477 65 HQPLKIGVILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKI 144 (539)
T ss_pred ccceEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCC
Confidence 4558999999999999999999999998877777889999999999999999999999999999999996 99999985
Q ss_pred ---CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCcc--CCCcccCchhHHHHHHH
Q 009394 221 ---HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIP--IIDKSFGFDTAVEEAQR 295 (535)
Q Consensus 221 ---~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~--gtD~S~GFdTAv~~~~~ 295 (535)
+++++++++|++++||+||+||||||+++|..|++++.+++++|+|||||||||||++ +||+|||||||++++++
T Consensus 145 ~~~e~~~~~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~~~~ 224 (539)
T TIGR02477 145 ETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSE 224 (539)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999999999998 59999999999999999
Q ss_pred HHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCC----CCCC-cchHHHHHHHHHHh-CCcEEE
Q 009394 296 AISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPF----YLEG-PGGLFEYIEKRLKE-NGHMVI 369 (535)
Q Consensus 296 ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf----~l~~-~~~l~e~I~~rl~~-~~~~vI 369 (535)
+|+++..++.|++++|||||+|||+|||||++||||+ +||+|||||+++ ++++ .+.+++.|.+|+.+ ++|+||
T Consensus 225 ~I~~i~~Da~s~~~~~~~VevMGR~aG~LAl~~aLat-~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvI 303 (539)
T TIGR02477 225 LIGNICRDALSAKKYWHFIRLMGRSASHIALECALQT-HPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKGKNFGVI 303 (539)
T ss_pred HHHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 9999988888888899999999999999999999999 799999999997 4432 34566666777755 689999
Q ss_pred EEecCCCch--------------------------hhHHHhhhc-----------------ccccccCCccchhh--HHH
Q 009394 370 VIAEGAGQE--------------------------LLSEIMHTM-----------------DQQDASGNKLLQDV--GLW 404 (535)
Q Consensus 370 VVaEGa~~~--------------------------~~~~~~~~~-----------------~~~Da~Gn~~l~~i--g~~ 404 (535)
||+||+.+. ++.+.++.. ..+|++||++++++ +++
T Consensus 304 vvsEGlie~ipe~~~Li~el~~~l~~~~~~~~~~~~i~~~ls~~s~~l~~~lp~~i~~qLl~~~D~~G~~~ls~i~te~l 383 (539)
T TIGR02477 304 LIPEGLIEFIPEVQALIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPEFIRHQLLLDRDPHGNVQVSQIETEKL 383 (539)
T ss_pred EEeCCchhhcchHHHHHHHHHhhhhcccccchhhhhhhhhcCHhHHHHHhhcchhHHHhhccCcCCCCCeeeccccHHHH
Confidence 999999541 110001110 24899999999988 889
Q ss_pred HHHHHHHHhCCcce-eEEEeeee----CCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEeCC--ee-----
Q 009394 405 ISQKIRDHFGKKRK-MTINLKYI----DPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNG--RH----- 472 (535)
Q Consensus 405 L~~~I~~~~~~~~~-~~~~lkyi----dpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG~tG~mVgi~~~--~~----- 472 (535)
|+++++++++...+ -.+..++. .+||.|||+.|+.+|+.||+.||+.|++++++|+||+|++++|- ..
T Consensus 384 L~~lV~~~l~~~~~~~~~k~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~ 463 (539)
T TIGR02477 384 LIELVQTELNKRKKEGEYKGKFSAVSHFFGYEGRCAFPSNFDSDYCYALGYTAAILLANGLTGYMSTIKNLTNPAEEWIA 463 (539)
T ss_pred HHHHHHHHHHhhhccccceeEEeecccccCcccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeE
Confidence 99999888763211 12345555 57999999999999999999999999999999999999999972 12
Q ss_pred eeeeHHHHHhhC
Q 009394 473 AYIPFYRITERQ 484 (535)
Q Consensus 473 ~~iPl~~v~~~~ 484 (535)
..+|+..+++..
T Consensus 464 ~~vPl~~~~n~e 475 (539)
T TIGR02477 464 GGVPLTMMMNME 475 (539)
T ss_pred ecccHHHHhChh
Confidence 679999988744
No 17
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=5.7e-77 Score=666.38 Aligned_cols=343 Identities=21% Similarity=0.299 Sum_probs=296.0
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCC--CeeeCCHhHHhchhcccCcceeccCCCC
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYAR--NTIPLTPKIVNGIHKRGGTILGTSRGGH 221 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~--~~~~L~~~~V~~i~~~GGs~LGTsR~~~ 221 (535)
+++||||+||||||||||++||++|+.+.+ .+.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|+++
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a~~--~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LGTsR~~~ 79 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGIY--VGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIGSARCKE 79 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHHHH--CCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCcccCCCCCc
Confidence 457999999999999999999999998753 457999999999999998 7899999999999999999999999853
Q ss_pred -----cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHH-----------------HHHHHcCCCeeEeeeccccccCccC
Q 009394 222 -----DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIF-----------------EEIRRRGLKVAVAGIPKTIDNDIPI 279 (535)
Q Consensus 222 -----d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~-----------------~~~~~~g~~i~VvgIPkTIDNDI~g 279 (535)
++++++++|++++||+||+||||||+++|+.|. ++.++++..++|||||||||||+++
T Consensus 80 f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~g 159 (762)
T cd00764 80 FREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCG 159 (762)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCC
Confidence 468999999999999999999999999999764 2334445678999999999999999
Q ss_pred CCcccCchhHHHHHHHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHH
Q 009394 280 IDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEK 359 (535)
Q Consensus 280 tD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~ 359 (535)
||+|||||||++.++++|+++++||.||+ |+||||||||+|||||+++|||+ +||+|||||.||+.+.++.+++.+++
T Consensus 160 TD~TiGfdTAl~~i~eaId~i~~tA~Sh~-R~fVVEvMGR~~G~LAl~aglA~-gAd~ilIPE~p~~~~~~~~i~~~l~~ 237 (762)
T cd00764 160 TDMTIGTDSALHRICEVVDAITTTAQSHQ-RTFVLEVMGRHCGYLALVSGLAT-GADWIFIPERPPEDGWEDQMCRRLSE 237 (762)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHhcC-CEEEEEECCCCchHHHHHHHhcc-CCCEEEecCCCCchhHHHHHHHHHHH
Confidence 99999999999999999999999999984 79999999999999999999999 79999999999983323345555555
Q ss_pred HHHh-CCcEEEEEecCCCchhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCC
Q 009394 360 RLKE-NGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSN 438 (535)
Q Consensus 360 rl~~-~~~~vIVVaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~ 438 (535)
+.+. +++++||||||+.+ ..|+... ..+|++.|+++++.+ +|...|||+|||++|+
T Consensus 238 ~~~~gk~~~iIVVaEGa~d--------------~~g~~i~---~~~l~~~l~~~~g~d------~R~t~LGh~QRGG~Ps 294 (762)
T cd00764 238 HRSRGKRLNIIIVAEGAID--------------DQLKPIT---SEDVKDLVVERLGLD------TRVTTLGHVQRGGTPS 294 (762)
T ss_pred HHhcCCCcEEEEEeCCCcc--------------ccCCCcc---HHHHHHHHHHhcCCC------eeEeecChhhcCCCCC
Confidence 4433 47999999999852 2344332 347888898887754 4556899999999999
Q ss_pred cchHHHHHHHHHHHHHHHHcCCC---ceEEEEeCCeeeeeeHHHHHhhCCcCC--CChHHHHHHHHhcCCCCCCChHHhh
Q 009394 439 ASDNVYCTLLAHSAIHGAMAGYT---GFTVGPVNGRHAYIPFYRITERQNRVV--ITDRMWARLLSSTNQPSFLDPKKVK 513 (535)
Q Consensus 439 a~Dr~~a~~LG~~AV~~a~aG~t---G~mVgi~~~~~~~iPl~~v~~~~k~v~--~~~~~w~~~l~~tgqp~f~~~~~~~ 513 (535)
++||++|++||..||+++++|.+ +.||++++|+++++||.++...+|.|. ++.+.|.+.++.-| ++|...-+++
T Consensus 295 a~Dr~la~~~G~~AV~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~~k~v~~~~~~~~~~~a~~lr~-~~f~~~~~~~ 373 (762)
T cd00764 295 AFDRILASLMGVEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDVQKAMDEKRFDEAAALRG-KSFDKNWNLY 373 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhhccchhhhhhhhhHHHHHHhcc-hhHHHHHHHH
Confidence 99999999999999999999987 899999999999999999999998885 46778888887744 5887766655
Q ss_pred h
Q 009394 514 Q 514 (535)
Q Consensus 514 ~ 514 (535)
.
T Consensus 374 ~ 374 (762)
T cd00764 374 K 374 (762)
T ss_pred H
Confidence 3
No 18
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=6.9e-77 Score=648.29 Aligned_cols=364 Identities=23% Similarity=0.338 Sum_probs=304.7
Q ss_pred ccccccccCCccccccCCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhc
Q 009394 126 RGRHFRRVGPREKVYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNG 205 (535)
Q Consensus 126 r~~~f~~agpr~~~~~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~ 205 (535)
+...|....+.. ...+||||++|||||||||+||+++++++...+.+.+||||++||+||+++++++|+|+.|++
T Consensus 56 ~~~~~~~~~~~~-----~~~~~IgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~ 130 (555)
T PRK07085 56 PYVTFVKGSESS-----SKPLKVGVILSGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDE 130 (555)
T ss_pred ccEEEEeCCCCc-----ccceEEEEECCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCeEECCHHHHhH
Confidence 445666543211 235799999999999999999999999777667789999999999999999999999999999
Q ss_pred hhcccCc-ceeccCCC----CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCC
Q 009394 206 IHKRGGT-ILGTSRGG----HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPII 280 (535)
Q Consensus 206 i~~~GGs-~LGTsR~~----~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gt 280 (535)
|+++||+ +|||+|++ +++++++++|++++||+||+||||||+++|..|++++++++++|+|||||||||||++++
T Consensus 131 ~~~~GG~~~LGssR~k~~~~e~~~~i~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~ 210 (555)
T PRK07085 131 YRNTGGFDMIGSGRTKIETEEQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNE 210 (555)
T ss_pred HHhCCChhhhcCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCC
Confidence 9999998 99999985 358999999999999999999999999999999999999999999999999999999955
Q ss_pred --CcccCchhHHHHHHHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCC----CCCCC-cchH
Q 009394 281 --DKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESP----FYLEG-PGGL 353 (535)
Q Consensus 281 --D~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~p----f~l~~-~~~l 353 (535)
|+|||||||+++++++|+++..+|.|+++||||||+|||+|||||++||||+ +||+|||||++ +++++ .+.+
T Consensus 211 ~id~s~GFdTA~~~~~~~I~~i~~Da~s~~~~~~~VevMGR~aG~LAl~~aLat-~~~iilIpE~~~~~~~~L~~i~~~i 289 (555)
T PRK07085 211 FIETSFGFDTATKTYSEMIGNISRDALSAKKYWHFIKLMGRSASHIALECALQT-HPNICLISEEVAEKKMSLQDIVHYI 289 (555)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEECCCChHHHHHHHHHhc-CCCEEEecCccccccCCHHHHHHHH
Confidence 9999999999999999999999999888899999999999999999999999 89999999995 44442 1233
Q ss_pred HHHHHHHHHh-CCcEEEEEecCCCch------hhHH--------------------------Hhhh--------------
Q 009394 354 FEYIEKRLKE-NGHMVIVIAEGAGQE------LLSE--------------------------IMHT-------------- 386 (535)
Q Consensus 354 ~e~I~~rl~~-~~~~vIVVaEGa~~~------~~~~--------------------------~~~~-------------- 386 (535)
++.|.+|..+ ++|+||||+||+.+. ++.| .++.
T Consensus 290 ~~~i~~r~~~gk~~gvIvvsEGlie~ipe~~~li~el~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~~s~~l~~~lp~~i~ 369 (555)
T PRK07085 290 ASVIADRAAKGKNYGVILIPEGLIEFIPEMKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAKLFKSLPEDIA 369 (555)
T ss_pred HHHHHHHHHcCCCeEEEEEeCCchhcCchHHHHHHHHHHhhhhcccccccccchhhhhhhhhhcCHHHHHHHhhcchhhh
Confidence 4444555544 689999999999741 1110 0110
Q ss_pred ---cccccccCCccchhh--HHHHHHHHHHHhCCcce-----eEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHH
Q 009394 387 ---MDQQDASGNKLLQDV--GLWISQKIRDHFGKKRK-----MTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGA 456 (535)
Q Consensus 387 ---~~~~Da~Gn~~l~~i--g~~L~~~I~~~~~~~~~-----~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a 456 (535)
...+|++||++++++ +++|+++|+++++.... ..+..+...+||.|||+.|+.+|+.||+.||+.|++++
T Consensus 370 ~qLl~~rD~~Gn~~ls~i~te~lL~~lV~~~l~~~k~~g~y~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~~~ 449 (555)
T PRK07085 370 RQLLLDRDPHGNVQVSKIETEKLLIEMVKKELEKLKPEGKYKGPFSAISHFFGYEGRSAFPSNFDADYCYALGYTAALLI 449 (555)
T ss_pred hhhccCcCCCCCeeeccccHHHHHHHHHHHHHHHhhcccccccceeeeeecCChhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 014899999999988 88999999988764211 22445566799999999999999999999999999999
Q ss_pred HcCCCceEEEEeCC--ee-----eeeeHHHHHhhC------------CcCCCChHHHH
Q 009394 457 MAGYTGFTVGPVNG--RH-----AYIPFYRITERQ------------NRVVITDRMWA 495 (535)
Q Consensus 457 ~aG~tG~mVgi~~~--~~-----~~iPl~~v~~~~------------k~v~~~~~~w~ 495 (535)
++|+||+|++++|- .. ..+||..+++.. +.|++++..++
T Consensus 450 ~~G~tG~m~~i~~l~~~~~~w~~~~vPl~~~~n~e~~~g~~~p~i~~~~Vdl~~~~f~ 507 (555)
T PRK07085 450 LNGKTGYMSTIKNLTSPYTEWIAGAVPLTMMMNMERRHGKEKPVIKKALVDLDGPPFK 507 (555)
T ss_pred HcCCCCeEEEEEeCCCCcceeeEecccHHHHhcHHhhCCCCCceeeeeeeCCCCHHHH
Confidence 99999999999982 22 679999988644 34666665555
No 19
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=9.7e-77 Score=666.60 Aligned_cols=342 Identities=25% Similarity=0.339 Sum_probs=299.9
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCC--CeeeCCHhHHhchhcccCcceeccCCCC--
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYAR--NTIPLTPKIVNGIHKRGGTILGTSRGGH-- 221 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~--~~~~L~~~~V~~i~~~GGs~LGTsR~~~-- 221 (535)
+||||+||||||||||++||++|+.+.+ + +.+||||++||+||+++ ++++|+|++|++|+++|||+|||+|++.
T Consensus 1 krIaIltsGGdapGmNaaIravv~~a~~-~-g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~ 78 (745)
T TIGR02478 1 KRIGVLTSGGDAQGMNAAVRAVVRMAIY-V-GCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGTIIGTARCKEFR 78 (745)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCceecCCCCCccc
Confidence 4899999999999999999999998754 3 57999999999999999 9999999999999999999999999853
Q ss_pred ---cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHH-----------------HHHHcCCCeeEeeeccccccCccCCC
Q 009394 222 ---DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFE-----------------EIRRRGLKVAVAGIPKTIDNDIPIID 281 (535)
Q Consensus 222 ---d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~-----------------~~~~~g~~i~VvgIPkTIDNDI~gtD 281 (535)
+.++++++|++++||+||+||||||+++|+.|++ +..+++..++|||||||||||+++||
T Consensus 79 ~~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd 158 (745)
T TIGR02478 79 ERPGRLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTD 158 (745)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCc
Confidence 3579999999999999999999999999997765 33445667899999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHH
Q 009394 282 KSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRL 361 (535)
Q Consensus 282 ~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl 361 (535)
+|||||||+++++++||+++++|.|| +|+||||||||+|||||+++|||+ +||+|||||.||+.+.++++++.++++.
T Consensus 159 ~TiGfdTA~~~i~~aid~i~~ta~Sh-~R~fvvEvMGR~~G~LAl~aalA~-gad~iliPE~~~~~~~~~~i~~~l~~~~ 236 (745)
T TIGR02478 159 MTIGADSALHRICEAIDAISSTAQSH-QRAFVVEVMGRHCGYLALMAAIAT-GADYVFIPERPPEEGWEDQLCHKLKRNR 236 (745)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcc-CCEEEEEEcCccccHHHHHHHhcc-CCCEEEecCCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999997 579999999999999999999999 7999999999999665556777776654
Q ss_pred Hh-CCcEEEEEecCCCchhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcc
Q 009394 362 KE-NGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNAS 440 (535)
Q Consensus 362 ~~-~~~~vIVVaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~ 440 (535)
+. ++++|||||||+. |+.||+.. ..+|++.|+++++.+ .|...|||+|||++|+++
T Consensus 237 ~~gk~~~iIvvaEG~~--------------d~~g~~i~---~~~l~~~l~~~~g~~------~R~~~LGh~QRgg~Psa~ 293 (745)
T TIGR02478 237 KAGKRKNIVIVAEGAI--------------DRDLNPIT---SEDVKDVLVERLGLD------TRITVLGHVQRGGAPSAY 293 (745)
T ss_pred HcCCCcEEEEEeCCcc--------------cccCCccc---HHHHHHHHHHhcCCc------eEEeecChhhcCCCCCHH
Confidence 33 5899999999984 33455432 357888888887654 456679999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCC---ceEEEEeCCeeeeeeHHHHHhhCCcCCCC--hHHHHHHHHhcCCCCCCChHHhhhh
Q 009394 441 DNVYCTLLAHSAIHGAMAGYT---GFTVGPVNGRHAYIPFYRITERQNRVVIT--DRMWARLLSSTNQPSFLDPKKVKQS 515 (535)
Q Consensus 441 Dr~~a~~LG~~AV~~a~aG~t---G~mVgi~~~~~~~iPl~~v~~~~k~v~~~--~~~w~~~l~~tgqp~f~~~~~~~~~ 515 (535)
||.+|++||..||+++++|.+ |+||+++++++.++||+++++..|.|+.. ...|...++.-| ++|...-+++..
T Consensus 294 Dr~la~~~G~~Av~~~~~g~~~~~~~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~~~~~~~a~~~r~-~~f~~~~~~~~~ 372 (745)
T TIGR02478 294 DRILATRQGVEAVLAVLESTPETPSPVISLRGNKIVRKPLVEAVAQTKTVAKAIKEKRFAEAMRLRG-REFVENLATFLF 372 (745)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEeHHHHHhhcCCCCHHHHhccHHHHHHhcC-HHHHHHHHHHHh
Confidence 999999999999999999998 99999999999999999999999999853 567888888844 588776665543
No 20
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=7e-76 Score=638.61 Aligned_cols=357 Identities=24% Similarity=0.307 Sum_probs=302.8
Q ss_pred ccccccccCCccccccCCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhc
Q 009394 126 RGRHFRRVGPREKVYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNG 205 (535)
Q Consensus 126 r~~~f~~agpr~~~~~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~ 205 (535)
+..+|....... -.+..+||||++|||||||||++|+++++.+...+++.+||||++||+||+++++++|+++.++.
T Consensus 56 p~~~~~~~~~~~---~~~~~~~IgIl~SGG~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~ 132 (550)
T cd00765 56 PSVAFVPDQDAP---SSAPKLKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQP 132 (550)
T ss_pred cceEEeecCCcc---cCCCCCEEEEECCCCCcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCCCeEECCHHHHhH
Confidence 456676643211 12456899999999999999999999999887666788999999999999999999999999999
Q ss_pred hhcccCc-ceeccCCC----CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCC
Q 009394 206 IHKRGGT-ILGTSRGG----HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPII 280 (535)
Q Consensus 206 i~~~GGs-~LGTsR~~----~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gt 280 (535)
|+++||+ +|||+|++ +++++++++|++++||+||+||||||+++|.+|+++++++|++++|||||||||||++++
T Consensus 133 ~~~~GGsd~LGs~R~k~~~~e~~~~i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t 212 (550)
T cd00765 133 YRNTGGFDMICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNK 212 (550)
T ss_pred HHhCCChhhhcCcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCC
Confidence 9999999 99999984 358999999999999999999999999999999999999999999999999999999985
Q ss_pred --CcccCchhHHHHHHHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCC----CC-cchH
Q 009394 281 --DKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYL----EG-PGGL 353 (535)
Q Consensus 281 --D~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l----~~-~~~l 353 (535)
|+|||||||+++++++|++++.+|.|++++++|||+|||+|||||++||||+ +||+|||||++|+. ++ .+.+
T Consensus 213 ~id~s~GFdTA~k~~a~~I~ni~~Da~s~~~~~~~VEvMGR~aG~LAl~~aLat-~p~lilIpE~~~~~~~~L~~v~~~I 291 (550)
T cd00765 213 EIETSFGFDTATKIYSELIGNVMRDARSTGKYWHFVKLMGRSASHIALECALKT-HPNICIISEEVSAQKQTLKNITDYM 291 (550)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCchHHHHHHHHHhc-CCCEEEecCcccccccCHHHHHHHH
Confidence 9999999999999999999999999988899999999999999999999999 89999999999943 31 1234
Q ss_pred HHHHHHHHHh-CCcEEEEEecCCCchh------hH------------------------------------------HHh
Q 009394 354 FEYIEKRLKE-NGHMVIVIAEGAGQEL------LS------------------------------------------EIM 384 (535)
Q Consensus 354 ~e~I~~rl~~-~~~~vIVVaEGa~~~~------~~------------------------------------------~~~ 384 (535)
++.|++|..+ ++|+||||+||+.+.+ +. +.+
T Consensus 292 ~~~i~~r~~~gk~~gvIvVsEGlie~ipe~~~Li~el~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~~f~~lp~~i 371 (550)
T cd00765 292 VDVICKRAELGYNFGVVLVPEGLIEFIPEVKELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLLPKGVYLPLFIEAI 371 (550)
T ss_pred HHHHHHHHHcCCCcEEEEEeCCchhhCchHHHHHHHHHHHhhhcccchhhhhhhcccHHHHHhhhccccccccccchHHH
Confidence 4555555544 6899999999987511 00 111
Q ss_pred hh--cccccccCCccchhh--HHHHHHHHHHHhCC-cce----eEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHH
Q 009394 385 HT--MDQQDASGNKLLQDV--GLWISQKIRDHFGK-KRK----MTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHG 455 (535)
Q Consensus 385 ~~--~~~~Da~Gn~~l~~i--g~~L~~~I~~~~~~-~~~----~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~ 455 (535)
.. ...+|++||++++++ ++.|+++|+++++. +.+ ..+......+||.|||+.|+.+|+.||+.||+.|+++
T Consensus 372 ~~ql~~~~D~~G~~qls~iete~lL~~lV~~~L~~~k~~g~y~~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~ 451 (550)
T cd00765 372 QEQLMLERDPHGNVQVSRIETEKLLIQMVETRLEKMKQAGAYKGQFMGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVL 451 (550)
T ss_pred HHHhhcccCCCCCEeeccchHHHHHHHHHHHHHHHhhhcccccccccceeeecCcchhccCCcHHHHHHHHHHHHHHHHH
Confidence 11 124899999999988 99999999998874 212 1133345568999999999999999999999999999
Q ss_pred HHcCCCceEEEEeCC-------eeeeeeHHHHHhhCCc
Q 009394 456 AMAGYTGFTVGPVNG-------RHAYIPFYRITERQNR 486 (535)
Q Consensus 456 a~aG~tG~mVgi~~~-------~~~~iPl~~v~~~~k~ 486 (535)
+.+|+||+|++++|- ++..+||..+++..|+
T Consensus 452 ~~~g~tGyM~~I~~l~~~~~~w~~~~vPl~~~mn~e~~ 489 (550)
T cd00765 452 LNSGKTGYISSVGNLAAPVEEWTVGGVPLTMLMNMERR 489 (550)
T ss_pred HHcCCCCeEEEEEeCCCCceEEEEecccHHHHhccccc
Confidence 999999999999972 2357999999886553
No 21
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=4e-75 Score=638.26 Aligned_cols=357 Identities=22% Similarity=0.343 Sum_probs=307.6
Q ss_pred ccccccc---cCCccccccCCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhH
Q 009394 126 RGRHFRR---VGPREKVYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKI 202 (535)
Q Consensus 126 r~~~f~~---agpr~~~~~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~ 202 (535)
+..+|.. ++|+.+.++++..+|||||+|||||||||+||+++++.+...+++.+||||++||+||+++++++|+++.
T Consensus 57 p~~~~~~~~~~~~~~~~~~~~~~~rIgIv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~v~Lt~~~ 136 (610)
T PLN03028 57 PLAHFLRATAKVPDAQVITEHPAVRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDV 136 (610)
T ss_pred cceEEecccccCccccccCCCcccEEEEEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCeEECCHHH
Confidence 4556765 4588888888888999999999999999999999999988766678999999999999999999999999
Q ss_pred HhchhcccCc-ceeccCCC----CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCc
Q 009394 203 VNGIHKRGGT-ILGTSRGG----HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDI 277 (535)
Q Consensus 203 V~~i~~~GGs-~LGTsR~~----~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI 277 (535)
|++|+++||+ +|||+|.+ +++++++++|++++||+||+||||||+++|.+|++++++++.+++|||||||||||+
T Consensus 137 v~~~~n~GG~~iLGSsR~~l~~~e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL 216 (610)
T PLN03028 137 LSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDL 216 (610)
T ss_pred HHHHHhcCCchhccCcCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCC
Confidence 9999999998 89999964 358999999999999999999999999999999999999999999999999999999
Q ss_pred c--CCCcccCchhHHHHHHHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCC-CCC---CC-c
Q 009394 278 P--IIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESP-FYL---EG-P 350 (535)
Q Consensus 278 ~--gtD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~p-f~l---~~-~ 350 (535)
+ +||+|||||||+++++++|++++.||.|+++||||||+|||+|||||++||||+ +||+|||||+. |+. .. .
T Consensus 217 ~~~~td~s~GFdTA~k~~ae~I~ni~~dA~S~~~~~~~VevMGR~aG~LAl~~aLat-~pniilI~EE~~~~~~tL~~iv 295 (610)
T PLN03028 217 KNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECALQS-HPNMVILGEEVAASKLTLFDIT 295 (610)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEEeCCcchHHHHHHHHHhc-CCCEEEecCcccccccccchHH
Confidence 8 799999999999999999999999999998899999999999999999999999 79999999974 332 22 2
Q ss_pred chHHHHHHHHHH-hCCcEEEEEecCCCchh------hHH---Hh------------------------------hhcccc
Q 009394 351 GGLFEYIEKRLK-ENGHMVIVIAEGAGQEL------LSE---IM------------------------------HTMDQQ 390 (535)
Q Consensus 351 ~~l~e~I~~rl~-~~~~~vIVVaEGa~~~~------~~~---~~------------------------------~~~~~~ 390 (535)
+.+++.|++|++ .++|+||||+||+.+.+ +.| .+ +....+
T Consensus 296 ~~i~~~I~~r~~~gk~~gvIvVsEGlie~ipe~~~li~el~~~~~~g~~~~~~~~~ls~~~~~l~~~lP~~i~~qLl~~~ 375 (610)
T PLN03028 296 KQICDAVQARAEQDKNHGVILIPEGLIESIPEVYALLQEIHGLLKQGVSVDNISSQLSPWASALFEFLPPFIKKQLLLHP 375 (610)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeCCccccCchHHHHHHHHHHHHhcCcchhhhhhhcCHHHHHHHhhccHHHHHHHhhcc
Confidence 478888898885 46899999999987431 111 00 001247
Q ss_pred cccCCccchh--hHHHHHHHHHHHhCCccee------EEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCc
Q 009394 391 DASGNKLLQD--VGLWISQKIRDHFGKKRKM------TINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAGYTG 462 (535)
Q Consensus 391 Da~Gn~~l~~--ig~~L~~~I~~~~~~~~~~------~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG~tG 462 (535)
|++||+++++ .+++|+++++++++.+.+. .+....-.+||.|||+.|+.+|+.||+.||+.|++++.+|+||
T Consensus 376 D~~G~~qls~i~te~lL~~lV~~eL~~r~~~g~~~~~~f~~~~h~~GYe~R~~~PS~fD~~yay~LG~~A~~l~~~G~tG 455 (610)
T PLN03028 376 ESDDSAQLSQIETEKLLAQLVETEMNKRTKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNG 455 (610)
T ss_pred CCCCCeeecchhHHHHHHHHHHHHHHHHhhccccccccccccccccChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999998 6688999998887643221 2222333689999999999999999999999999999999999
Q ss_pred eEEEEeCC-------eeeeeeHHHHHhh
Q 009394 463 FTVGPVNG-------RHAYIPFYRITER 483 (535)
Q Consensus 463 ~mVgi~~~-------~~~~iPl~~v~~~ 483 (535)
+|++++|- ++..+||..+++.
T Consensus 456 ~M~~I~nl~~~~~~w~~~~vPl~~~m~~ 483 (610)
T PLN03028 456 YMATVTNLKSPVNKWRCGAAPITAMMSV 483 (610)
T ss_pred eEEEEEeCCCCCeEEEEcccCHHHHhhH
Confidence 99999972 2257999998763
No 22
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=5.8e-74 Score=624.92 Aligned_cols=341 Identities=23% Similarity=0.286 Sum_probs=293.9
Q ss_pred CCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCc-ceeccCCC-
Q 009394 143 SDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGT-ILGTSRGG- 220 (535)
Q Consensus 143 ~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs-~LGTsR~~- 220 (535)
+..+|||||+|||||||||+||+++++++....++.+||||++||+||+++++++|+++.++.|+++||+ +|||+|++
T Consensus 94 ~~~~~IGIv~sGG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~ 173 (568)
T PLN02251 94 DQKLKIGVVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKI 173 (568)
T ss_pred cccceEEEECcCCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCc
Confidence 3457999999999999999999999999876666789999999999999999999999999999999998 99999984
Q ss_pred ---CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC--cccCchhHHHHHHH
Q 009394 221 ---HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID--KSFGFDTAVEEAQR 295 (535)
Q Consensus 221 ---~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD--~S~GFdTAv~~~~~ 295 (535)
+++++++++|++++||+||+||||||+++|..|+++++++|.+|+||||||||||||+++| +|||||||++++++
T Consensus 174 ~~~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~ 253 (568)
T PLN02251 174 ETPEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSE 253 (568)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999 69999999999999
Q ss_pred HHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCC-c----chHHHHHHHHHHh-CCcEEE
Q 009394 296 AISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEG-P----GGLFEYIEKRLKE-NGHMVI 369 (535)
Q Consensus 296 ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~-~----~~l~e~I~~rl~~-~~~~vI 369 (535)
+|++++.||.|++++++|||+|||+|||||++||||+ +||+|||||++++-+. + +.+++.|++|..+ ++|+||
T Consensus 254 ~I~ni~~da~S~~k~~~~VevMGR~aG~LAL~~aLat-~pniilIpEe~~~~~~~L~~I~~~I~~~I~~R~~~gk~~gvI 332 (568)
T PLN02251 254 MIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQT-HPNITIIGEEVAAKKLTLKNVTDYIVDVICKRAELGYNYGVI 332 (568)
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCchHHHHHHHHHhh-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 9999999999998889999999999999999999999 8999999999665331 2 2344556666654 689999
Q ss_pred EEecCCCch------hhHH---------------------------------Hhh--hcccccccCCccchh--hHHHHH
Q 009394 370 VIAEGAGQE------LLSE---------------------------------IMH--TMDQQDASGNKLLQD--VGLWIS 406 (535)
Q Consensus 370 VVaEGa~~~------~~~~---------------------------------~~~--~~~~~Da~Gn~~l~~--ig~~L~ 406 (535)
||+||+.+. ++.| .+. ....+|++||+++++ .++.|+
T Consensus 333 lVsEGlie~ipe~~~li~el~~~l~~~~~~~~~~~~~~ls~~~~~lf~~lP~~i~~qll~~rD~~G~~qls~Iete~lL~ 412 (568)
T PLN02251 333 LIPEGLIDFIPEVQHLIAELNEILAHDVVDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVAKIETEKMLI 412 (568)
T ss_pred EEeCCchhhCchHHHHHHHHHHHhhhcccccchhhhhhCCHHHHHHHHhCcHHHHHHhccccCCCCCeeecccHHHHHHH
Confidence 999999321 1111 000 012489999999998 778999
Q ss_pred HHHHHHhCCcce-----eEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEeCC-------eeee
Q 009394 407 QKIRDHFGKKRK-----MTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNG-------RHAY 474 (535)
Q Consensus 407 ~~I~~~~~~~~~-----~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG~tG~mVgi~~~-------~~~~ 474 (535)
++++++++..+. ..+..+...+||.|||+.|+.+|+.||+.||+.|++++.+|+||+|++++|. ++..
T Consensus 413 ~lV~~~L~~rk~~~~~~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~li~~G~tGyM~~I~nl~~~~~~w~~~~ 492 (568)
T PLN02251 413 QMVETELEKRKQEGSYKGHFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVGG 492 (568)
T ss_pred HHHHHHHhhhccccccccccceeEEecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCcceeEEcC
Confidence 999988864211 1233455679999999999999999999999999999999999999999973 1256
Q ss_pred eeHHHHHhhC
Q 009394 475 IPFYRITERQ 484 (535)
Q Consensus 475 iPl~~v~~~~ 484 (535)
+||..+.+..
T Consensus 493 vpl~~~mn~e 502 (568)
T PLN02251 493 TALTSLMDVE 502 (568)
T ss_pred ccHHHHhhhh
Confidence 9999988744
No 23
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=4.5e-73 Score=576.42 Aligned_cols=275 Identities=37% Similarity=0.571 Sum_probs=242.4
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCC----
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGH---- 221 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~---- 221 (535)
+||||+||||||||||++|+++++.+.. .+.+||||++||+||+++++++|+|+++++|.++|||+|||+|++.
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~~--~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~lgtsR~~~~~~~ 78 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAIR--RGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGTILGTSRFKPFKDP 78 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHHH--TTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSSTTTBBBSSGGGSH
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHh--cCCEEEEEEccCccceeeeEEeecccCccccccCCCcEeCcccCccccch
Confidence 4899999999999999999999998753 4579999999999999999999999999999999999999999852
Q ss_pred -cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHH
Q 009394 222 -DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAA 300 (535)
Q Consensus 222 -d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 300 (535)
+.++++++|++++||+||+||||||+++|++|++++. ++|||||||||||+++||+|||||||+++++++|+++
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~-----i~vigiPkTIDNDi~gtd~siGf~TA~~~~~~~i~~i 153 (282)
T PF00365_consen 79 EGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFG-----IPVIGIPKTIDNDIPGTDYSIGFDTAVNYIAEAIDNI 153 (282)
T ss_dssp HHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHH-----SEEEEEEEETTSSCTTSSS-BTHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCc-----eEEEEEeccccCCcCCCCCCcccCchhHHHHHHHHHH
Confidence 3568999999999999999999999999999997653 8899999999999999999999999999999999999
Q ss_pred HhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHh-CCcEEEEEecCCCchh
Q 009394 301 HVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE-NGHMVIVIAEGAGQEL 379 (535)
Q Consensus 301 ~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~-~~~~vIVVaEGa~~~~ 379 (535)
+++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++ .+++.|++++++ +++++||||||+...
T Consensus 154 ~~~a~s~-~rv~ivEvmGr~~G~LAl~~ala~-~a~~ilipE~~~~~~---~~~~~i~~~~~~~k~~~iVvvsEG~~~~- 227 (282)
T PF00365_consen 154 KTTARSH-NRVFIVEVMGRNAGWLALAAALAT-GADLILIPEEPFDLD---ELLDDIKKRYERGKRYGIVVVSEGAKDG- 227 (282)
T ss_dssp HHHHHHS-TEEEEEEESSTTSTHHHHHHHHHH-TSSEEEBTTSHHHHH---HHHHHHHHHHHTTSSEEEEEEETTSBSS-
T ss_pred HHhhccc-CCceEEEeCCCCcCHHHHHHHhcc-CCCEEEEeccccchH---HHHHHhhhhhcccCceEEEEeccccccc-
Confidence 9999986 689999999999999999999999 799999999998877 899999999876 478999999999651
Q ss_pred hHHHhhhcccccccCCccchhh-HHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHc
Q 009394 380 LSEIMHTMDQQDASGNKLLQDV-GLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMA 458 (535)
Q Consensus 380 ~~~~~~~~~~~Da~Gn~~l~~i-g~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~a 458 (535)
.++ .+.+.+..++.++ +.+|+..|||+|||++|+++||++|++||.+||+++++
T Consensus 228 -------------------~~i~~~~~~~~~~~~~~------~~~r~~~lGh~Qrgg~P~~~DR~la~~~g~~Av~~i~e 282 (282)
T PF00365_consen 228 -------------------QPISSEFIKELLEEGLG------FDVRVTILGHLQRGGTPSAFDRILATRFGIKAVEAILE 282 (282)
T ss_dssp -------------------HBHHHHHHHHHHHHTTT------SEEEEEE-GGGGGTSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------------ccccccccccccccccc------cceeecccchhhcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 011 1244444444444 35778889999999999999999999999999999864
No 24
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=2.4e-71 Score=635.66 Aligned_cols=338 Identities=23% Similarity=0.309 Sum_probs=290.0
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCc-ceeccCCC---
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGT-ILGTSRGG--- 220 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs-~LGTsR~~--- 220 (535)
.+|||||||||||||||+||+++++.+...+++.+||||++||+||+++++++|+++.|++|+++||+ +|||+|++
T Consensus 102 ~krIGILtSGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~~~ieLt~~~V~~i~n~GGt~iLGS~R~kl~~ 181 (1328)
T PTZ00468 102 ARRIGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIET 181 (1328)
T ss_pred CCEEEEECcCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCCCeEeCCHHHHHHHHhCCCcccccCcCCCCCC
Confidence 47999999999999999999999998865566789999999999999999999999999999999997 99999985
Q ss_pred -CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccC--CCcccCchhHHHHHHHHH
Q 009394 221 -HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPI--IDKSFGFDTAVEEAQRAI 297 (535)
Q Consensus 221 -~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~g--tD~S~GFdTAv~~~~~ai 297 (535)
+++++++++|++++||+||+||||||+++|.+|+++++++|++++|||||||||||+++ ||+|||||||+++++++|
T Consensus 182 ee~~~~~le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~iae~I 261 (1328)
T PTZ00468 182 EEQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQI 261 (1328)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999985 899999999999999999
Q ss_pred HHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCC-----cchHHHHHHHHHHh-CCcEEEEE
Q 009394 298 SAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEG-----PGGLFEYIEKRLKE-NGHMVIVI 371 (535)
Q Consensus 298 ~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~-----~~~l~e~I~~rl~~-~~~~vIVV 371 (535)
++++++|.|+++||||||+|||+|||||++||||+ +||+|||||++++-+. .+.+++.|.+|++. ++|+||||
T Consensus 262 ~nl~~~A~S~~~rv~~VEVMGR~AGhLAL~~ALAt-ganiiLIPEe~~~k~~tL~dIvd~Iv~~I~kR~~~Gk~ygIIvV 340 (1328)
T PTZ00468 262 GSIMDAIKTEGYGYYFVRLMGRSASHITLECGLQT-RANMILIGEEIKEENRSLMSIVDEIVEMILKRDSLGKKHGIVLL 340 (1328)
T ss_pred HHHHHHhhhcCCeEEEEEeCCcchHHHHHHHHHhc-CCCEEEecCcCccchhhhhHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999988899999999999999999999999 8999999999987431 22344555555544 58999999
Q ss_pred ecCCCchh------h----------------H---------------HHhhh--cccccccCCccchhhH--HHHHHHHH
Q 009394 372 AEGAGQEL------L----------------S---------------EIMHT--MDQQDASGNKLLQDVG--LWISQKIR 410 (535)
Q Consensus 372 aEGa~~~~------~----------------~---------------~~~~~--~~~~Da~Gn~~l~~ig--~~L~~~I~ 410 (535)
+||+.+.. + . +.++. ...+|++||+++++++ ++|+++|+
T Consensus 341 sEGliefIpe~~~Li~eln~~l~~~~~g~~i~~~Ls~~~~~lf~~lP~~i~~qLl~~rD~hGnvqls~I~tEklLa~lV~ 420 (1328)
T PTZ00468 341 PEGLIEFIPEFETLIKELNLILLKTNDRKQIIDSLSQEMKTLFLELPSDVQNQLLLERDPHGNVQVAKIATEELLVHMAK 420 (1328)
T ss_pred cCCccccccHHHHHHHHHHHhhccccchhhhhhhcCHHHHHHHHhCcHHHHHHhccccCCCCCEeeccccHHHHHHHHHH
Confidence 99986311 1 0 00010 1248999999999987 89999998
Q ss_pred HHhCCccee--EEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEeCCe-------eeeeeHHHHH
Q 009394 411 DHFGKKRKM--TINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNGR-------HAYIPFYRIT 481 (535)
Q Consensus 411 ~~~~~~~~~--~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG~tG~mVgi~~~~-------~~~iPl~~v~ 481 (535)
+++...... .+.+++-.+||.|||+.|+.+|+.||+.||+.|++++.+|+||+|++++|.+ +..+||..++
T Consensus 421 ~~L~~~~~~~~~f~~k~HflGYE~RCa~PS~FD~~yayaLG~~Av~l~~~G~TGyMatI~nl~~~~~~W~~~~vPL~~mm 500 (1328)
T PTZ00468 421 EKLEEVKKDYILDNVKTHYFGYEGRCALPSNFDASYCFALGHTAAALIDNQRSGYMAVVRKLSLTPEQWEPAGCPLTYMM 500 (1328)
T ss_pred HHHHHhhcccccCCceEeecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEccccHHHHh
Confidence 887421110 1123333689999999999999999999999999999999999999999732 2569999987
Q ss_pred hh
Q 009394 482 ER 483 (535)
Q Consensus 482 ~~ 483 (535)
+.
T Consensus 501 n~ 502 (1328)
T PTZ00468 501 NI 502 (1328)
T ss_pred hH
Confidence 64
No 25
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=3e-70 Score=630.34 Aligned_cols=338 Identities=26% Similarity=0.350 Sum_probs=287.9
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCc-ceeccCCC--
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGT-ILGTSRGG-- 220 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs-~LGTsR~~-- 220 (535)
+++||||++|||||||||+||+++++.+.....+++||||++||+||+++++++|+|..|++|+++||+ +|||+|..
T Consensus 176 ~~~rIgIl~SGGpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~~~veLt~~~V~~~~n~GGs~iLGSgR~k~~ 255 (1419)
T PTZ00287 176 NVLKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLWSGRGKVR 255 (1419)
T ss_pred CceEEEEEccCCCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHHhhHHhCCChhHhhCCCCCCC
Confidence 458999999999999999999999998865556789999999999999999999999999999999997 89999974
Q ss_pred --CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCcc--CCCcccCchhHHHHHHHH
Q 009394 221 --HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIP--IIDKSFGFDTAVEEAQRA 296 (535)
Q Consensus 221 --~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~--gtD~S~GFdTAv~~~~~a 296 (535)
+++++++++|++++||+||+||||||+++|.+|++++.+.+++++||||||||||||+ +||+|||||||+++++++
T Consensus 256 ~~e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA~n~iae~ 335 (1419)
T PTZ00287 256 NKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEV 335 (1419)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCC-cchHHHHH----HHHHHh-CCcEEEE
Q 009394 297 ISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEG-PGGLFEYI----EKRLKE-NGHMVIV 370 (535)
Q Consensus 297 i~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~-~~~l~e~I----~~rl~~-~~~~vIV 370 (535)
|+++++++.++++++||||||||+|||||++||||+ +||+|||||++|+.+. +++++++| .+|... ++|+|||
T Consensus 336 I~ni~~D~~Ss~~~~~VVEVMGR~AG~LAl~~aLAt-gAdlilIPEe~~~~~~~L~dI~~~Iv~~I~kR~~~gk~~gVIv 414 (1419)
T PTZ00287 336 IGNLCTDVKTGHNVYHVVRVMGRSASHVVLECALQT-RPNIVLIGEEVEKENLSLKDIVSNIVNTILKRRSLNKNYGVIL 414 (1419)
T ss_pred HHHHHHHHHHhCCeEEEEEECCCcchHHHHHHHHhc-CCCEEEecCcccccCCCHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 999999888877889999999999999999999999 7999999998654331 23444444 444433 5899999
Q ss_pred EecCCCchh------hHH-------------Hh----------------hhcccccccCCccchhhHH--HHHHHHHHHh
Q 009394 371 IAEGAGQEL------LSE-------------IM----------------HTMDQQDASGNKLLQDVGL--WISQKIRDHF 413 (535)
Q Consensus 371 VaEGa~~~~------~~~-------------~~----------------~~~~~~Da~Gn~~l~~ig~--~L~~~I~~~~ 413 (535)
|+||+.+.+ +.| .+ +....+|++||+++++++. .|.+++++++
T Consensus 415 VsEGlie~Ipe~~~Li~eln~~l~~g~~~~~~~~~~~~~f~~LP~~i~~qLl~~rD~~Ghvqls~i~te~lL~~~V~~~L 494 (1419)
T PTZ00287 415 IPEGLIEFVPEMKILIGELNVILKEGPFDASKLKHSREVWDFLPSIIRDQLLMDRESTGYIQVGKIATERLIIVLVESEL 494 (1419)
T ss_pred EeCCcchhcchHHHHHHHhhhhcccCcchhhhhhhhhhhhhhccHHHHhhhhcccCCCCCEeccccchHHHHHHHHHHHH
Confidence 999987611 111 00 0012489999999997765 6666666655
Q ss_pred CCc--ceeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEeCC-------eeeeeeHHHHHh
Q 009394 414 GKK--RKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNG-------RHAYIPFYRITE 482 (535)
Q Consensus 414 ~~~--~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG~tG~mVgi~~~-------~~~~iPl~~v~~ 482 (535)
... .+..+..+...+||+|||+.|+.+|+.||+.||+.|++++.+|+||+|++++|- ++..+||..++.
T Consensus 495 ~~~~~~g~~~k~~~h~lGYe~RcA~PS~fD~~yay~LG~~Av~l~~~G~tG~Mv~I~nl~~~~~~w~~~~vPl~~~m~ 572 (1419)
T PTZ00287 495 AKLNDNNLNIQFMAHYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDSYANWIPAAIPFLRIMH 572 (1419)
T ss_pred HHHHhcCCCeeEEEeecCcchhccCCcHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCcceeEEcccCHHHHhh
Confidence 321 123456777889999999999999999999999999999999999999999872 225799999877
No 26
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.7e-63 Score=574.48 Aligned_cols=335 Identities=19% Similarity=0.230 Sum_probs=279.2
Q ss_pred CCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcce-eccCCC-
Q 009394 143 SDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTIL-GTSRGG- 220 (535)
Q Consensus 143 ~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~L-GTsR~~- 220 (535)
+.++|||||||||||||||+|||++++.+...++ . ++| ++||.||+++++++|+.+.|++|+++|||+| ||+|..
T Consensus 834 ~~~~rIGVLtSGGdAPG~NnVIrgvv~~a~~~~g-~-~~g-f~G~~GLl~~~~i~Lt~~~V~~i~n~GGtiLlgssR~~~ 910 (1419)
T PTZ00287 834 SFEIKIGIVFLSRQAPGAMNVLCGLYRRLKLLKG-V-CIA-FYGLYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHS 910 (1419)
T ss_pred cCCcEEEEECcCCCcHhHHHHHHHHHHHHHHhCC-e-EEE-EeCchhhcCCCeEECCHHHHhhHHHcCCeeecCCcCCCC
Confidence 3568999999999999999999999998865443 3 455 5599999999999999999999999999998 999962
Q ss_pred ----CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccC--CCcccCchhHHHHHH
Q 009394 221 ----HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPI--IDKSFGFDTAVEEAQ 294 (535)
Q Consensus 221 ----~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~g--tD~S~GFdTAv~~~~ 294 (535)
+.+++++++|++++||+|||||||||+++|..|++++.+.|++++||||||||||||.+ ||+|||||||+++++
T Consensus 911 f~t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~s 990 (1419)
T PTZ00287 911 LFDKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYA 990 (1419)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999987 999999999999999
Q ss_pred HHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCC-----cchHHHHHHHHHHh-CCcEE
Q 009394 295 RAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEG-----PGGLFEYIEKRLKE-NGHMV 368 (535)
Q Consensus 295 ~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~-----~~~l~e~I~~rl~~-~~~~v 368 (535)
++|++++++|.|++++|||||||||+|||||++||||+ +||+|||||++++-+. ++.+++.|++|.+. ++|+|
T Consensus 991 eaI~nL~~dA~S~~ry~~fVEVMGR~aGhLALe~aLat-gAniiLIPEe~~~~~~tL~~Iid~I~~~I~~R~~~GK~ygI 1069 (1419)
T PTZ00287 991 SLIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQT-HPNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYGT 1069 (1419)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCCchHHHHHHHHHhc-CCCEEEecCcccccccchhHHHHHHHHHHHHHHHcCCCcEE
Confidence 99999999999998889999999999999999999999 8999999999987221 23566777777765 57999
Q ss_pred EEEecCCCch------hhHH---Hh--------------------------------------------------h----
Q 009394 369 IVIAEGAGQE------LLSE---IM--------------------------------------------------H---- 385 (535)
Q Consensus 369 IVVaEGa~~~------~~~~---~~--------------------------------------------------~---- 385 (535)
|||+||.... ++.| -+ +
T Consensus 1070 VlV~EGLie~Ipe~k~Li~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lsp~s~ 1149 (1419)
T PTZ00287 1070 VLIPDALLMHLPHMKILLSEISDILNDANEKGQLVEARNDLVNLSTTQHGHLGSTAGTVAGAEQPLSASPWVSKLTPWSL 1149 (1419)
T ss_pred EEEcCcHHHhCHHHHHHHHHHHHHHHhhhhcccccccccchhhccccccccccccccccccccccchhhHHHhhCCHHHH
Confidence 9999996421 1111 00 0
Q ss_pred ------------hcccccccCCccchhh--HHHHHHHHHHHhCCcce-----eEEEeeeeCCCccccCCCCCcchHHHHH
Q 009394 386 ------------TMDQQDASGNKLLQDV--GLWISQKIRDHFGKKRK-----MTINLKYIDPTYMIRAVPSNASDNVYCT 446 (535)
Q Consensus 386 ------------~~~~~Da~Gn~~l~~i--g~~L~~~I~~~~~~~~~-----~~~~lkyidpgy~qRg~~p~a~Dr~~a~ 446 (535)
+.-.+|. ||+++..| .+.|++++++++..++. ..+...+.-.||..||+.|+-||+.||+
T Consensus 1150 ~lf~slP~~i~~qLl~rD~-gn~~vs~IeTE~LL~~mV~~eL~~rk~~g~y~g~F~~~~HffGYegR~~~PS~FD~~y~Y 1228 (1419)
T PTZ00287 1150 ALLKTFPQFIIKELLHVDL-RSMRFEKLETEQLLLQMVKEELHQRKQKGKYSGSFMGLTHFFGYQGRSSLPSEFDCKLAY 1228 (1419)
T ss_pred HHHHhccHHHHHHHhccCC-CCcccccchHHHHHHHHHHHHHHHHHhcCccccccceeeeccccccccCCCCccchHHHH
Confidence 0013676 88887644 45777777776542211 1222222347999999999999999999
Q ss_pred HHHHHHHHHHHcCCCceEEEEeC--C-----eeeeeeHHHHHh
Q 009394 447 LLAHSAIHGAMAGYTGFTVGPVN--G-----RHAYIPFYRITE 482 (535)
Q Consensus 447 ~LG~~AV~~a~aG~tG~mVgi~~--~-----~~~~iPl~~v~~ 482 (535)
.||+.|..++..|+||+|++++| + +...+||..+..
T Consensus 1229 ~LG~~A~~li~~g~tGym~~i~nl~~~~~~W~~~giPlt~mm~ 1271 (1419)
T PTZ00287 1229 SYGHAASIVIESGLTGYIVSIRGLCGNIKDWKLFAIPFISLMK 1271 (1419)
T ss_pred HHHHHHHHHHhCCCeEEEEEecCccCCHHHeEEccchhhhhhc
Confidence 99999999999999999999987 1 336799988765
No 27
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=1e-54 Score=498.99 Aligned_cols=334 Identities=16% Similarity=0.203 Sum_probs=266.8
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCe--eeCC----HhHHhchhcccCcceecc-
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNT--IPLT----PKIVNGIHKRGGTILGTS- 217 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~--~~L~----~~~V~~i~~~GGs~LGTs- 217 (535)
.+++|||..||++||+|+||++++.++.+ .+ ++||++||.||++++. +.|+ .+.++.|+++||++|+++
T Consensus 675 ~~~vgIv~~g~~aPG~NnVI~g~~~~~~~-~g---vig~~~G~~~L~~~~~~~v~l~~~~~~~~~~~~~n~GG~~~~~~~ 750 (1328)
T PTZ00468 675 CESLGLILSCLSTPGTQNVICGLVNGLPS-LK---QLIVFKSLSDFYEGKALKVDLTSEGSLEFFENSLNSGGCIFPNGV 750 (1328)
T ss_pred ceeEEEEecCCCCccHHHHHHHHHHHHHh-CC---cEEEEechhHHhcCCceEEecccchhHHHHHHHHhcCCeeeeccc
Confidence 47999999999999999999999998864 22 9999999999999874 4565 578999999999999998
Q ss_pred ---------CCC---------C---------------cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcC---
Q 009394 218 ---------RGG---------H---------------DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRG--- 261 (535)
Q Consensus 218 ---------R~~---------~---------------d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g--- 261 (535)
|.. + +.+.+.+.|++++||+||+||||||+++|..|++++.+++
T Consensus 751 ~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~ 830 (1328)
T PTZ00468 751 EIKMNVSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATFGASLSEQLICMSLNG 830 (1328)
T ss_pred cccccccccccCccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhhcccc
Confidence 531 1 3478999999999999999999999999999999988764
Q ss_pred --CCeeEeeeccccccCccC--CCcccCchhHHHHHHHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccE
Q 009394 262 --LKVAVAGIPKTIDNDIPI--IDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDC 337 (535)
Q Consensus 262 --~~i~VvgIPkTIDNDI~g--tD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ 337 (535)
..++||||||||||||++ +|+|||||||+++++++|.++..+|.|+++||||||+|||+|||||+++|||+ +||+
T Consensus 831 ~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~kr~~fVevMGR~ag~LAL~~gLat-gani 909 (1328)
T PTZ00468 831 MKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTSNVALEVGIQT-HPNL 909 (1328)
T ss_pred ccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcCCcEEEEEECCcChHHHHHHHHHhh-CCCE
Confidence 469999999999999988 99999999999999999966655555556789999999999999999999999 7999
Q ss_pred EecCCCCC--------------CCCC-cchHHHHHHHHHHh-CCcEEEEEecCCCchh---------hHHH---------
Q 009394 338 CLIPESPF--------------YLEG-PGGLFEYIEKRLKE-NGHMVIVIAEGAGQEL---------LSEI--------- 383 (535)
Q Consensus 338 ilIPE~pf--------------~l~~-~~~l~e~I~~rl~~-~~~~vIVVaEGa~~~~---------~~~~--------- 383 (535)
|+|||++. +++. .+.+++.|.+|.+. ++|++|||+||+.+.+ +.|.
T Consensus 910 vlIpEe~~~~~~~~~~~~~~~~tL~~ii~~I~~~I~~R~~~Gk~ygvIlIsEGlie~ip~~~e~~~li~e~~a~~~~~~~ 989 (1328)
T PTZ00468 910 VVIPERYADSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFDQVYPTREYRKIFSRFSTQNLCNAS 989 (1328)
T ss_pred EEecCcccccccccccccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEcCChHHhCCCHHHHHHHHHHHhhhcccccc
Confidence 99999973 3321 23455666677655 5799999999975432 1110
Q ss_pred -------------------h----hh-------cccccccCCccchhh--HHHHHHHHHHHhCCcce-----eEEEeeee
Q 009394 384 -------------------M----HT-------MDQQDASGNKLLQDV--GLWISQKIRDHFGKKRK-----MTINLKYI 426 (535)
Q Consensus 384 -------------------~----~~-------~~~~Da~Gn~~l~~i--g~~L~~~I~~~~~~~~~-----~~~~lkyi 426 (535)
+ .. --..|..||+++..| .+.|++++++++..+++ ..+..-+.
T Consensus 990 ~~~~~~~~~~~~Ls~~~~~~~~~f~~lp~~i~~qL~~~~dgn~~vs~IeTE~lL~~lV~~el~~rk~~g~y~g~f~~~~H 1069 (1328)
T PTZ00468 990 NSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLINSRKICDVRTEIILSALVQKELKFRRSKNKIKNGMNPVCF 1069 (1328)
T ss_pred chhhhhhhhhccCCHHHHHHHHHHHhhhHHHHHHHHhccCCCcchhhhhHHHHHHHHHHHHHHHHHhcCccccccceeec
Confidence 0 00 001334488888754 45777777776542211 12222233
Q ss_pred CCCccccCCCCCcchHHHHHHHHHHHHHHHHcCC-CceEEEEeC--C-----eeeeeeHHHHHhh
Q 009394 427 DPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAGY-TGFTVGPVN--G-----RHAYIPFYRITER 483 (535)
Q Consensus 427 dpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG~-tG~mVgi~~--~-----~~~~iPl~~v~~~ 483 (535)
-+||..||+.|+-||+.||+.||+.|..++..|. ||+|.++.| + +...+||..+..-
T Consensus 1070 ffGYegR~~~Ps~FD~~y~y~lG~~A~~li~~g~~~Gym~~i~nl~~~~~~W~~~~iPlt~mm~~ 1134 (1328)
T PTZ00468 1070 SFTDQVRACIPSDFDSTLGLMYGMLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIPISSLMTL 1134 (1328)
T ss_pred cccccccCCCCCcCchHHHHHHHHHHHHHHHCCCCceEEEEecCccCCHHHheeCccchHHhhCc
Confidence 4799999999999999999999999999999999 699999987 2 2257999987763
No 28
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.4e-56 Score=483.19 Aligned_cols=457 Identities=39% Similarity=0.480 Sum_probs=414.7
Q ss_pred CCCccceeccCC------ccccccccchhhhccCCCCCCCCCCCCCccccccccccccChhHHHHHhh--cccCCccccc
Q 009394 59 ENSERKIITGEA------GYVLEDVPHFSDYISDLPTHPNPLQDNPSYSVVKQHFVDVDDSVAQNIVV--HQDSPRGRHF 130 (535)
Q Consensus 59 ~~~~~~~~~~~~------~~~~e~V~~l~~~~p~~p~~~~pl~~n~~~~~~~~~~V~~t~~V~~~~~~--~~~~~r~~~f 130 (535)
.+....|.+|.. +++.|+..+...++|++|.+++++..|+.++.+...++..++.|.+.+.. .....+..+|
T Consensus 26 g~~~~~i~egy~gl~~g~~~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~gr~~aa~~~i~~~i~~l~~~ggdgsl~g 105 (666)
T KOG2440|consen 26 GCKVYLIYEGYEGLVRGGDSIKEAQWLRVSYILSLGGTLIGTARCKAFRGREGRLAAADNLIARGIPNLVVIGGDGSLTG 105 (666)
T ss_pred CceEEEEecccccccccccchhhcchhhhCCcccCCCcccccccccccccccceeccchhHHHhhcCeeEecCCccchhH
Confidence 455567777776 68899999999999999999999999999999999999999999998874 4556677889
Q ss_pred cccCCccccccCCCCeeEEEEccCCCCCchhHHHHHHHHHHH-HhcCCeEEEEEccc----------------cccccCC
Q 009394 131 RRVGPREKVYFESDDVHACIVTCGGLCPGLNTVIREIVCGLY-YMYGVHKVLGIEGG----------------YRGFYAR 193 (535)
Q Consensus 131 ~~agpr~~~~~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~-~~~~~~~V~Gi~~G----------------~~GL~~~ 193 (535)
.+++|+++++|.++.+|+|||||||.|||.|.+|+++|-.+. .+|+...++|+.-+ ++||+..
T Consensus 106 a~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv~e 185 (666)
T KOG2440|consen 106 ARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFVAE 185 (666)
T ss_pred hhhCchhccccchHHhhcceeecccccccCccEEEEEeccccccccccceeeccccchhhhhhhhhhhhhccCcceEEee
Confidence 999999999999999999999999999999999999999886 67888899998877 9999988
Q ss_pred Ce--eeCCHhHHhchhcccCcceeccCCCCc---HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEee
Q 009394 194 NT--IPLTPKIVNGIHKRGGTILGTSRGGHD---TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAG 268 (535)
Q Consensus 194 ~~--~~L~~~~V~~i~~~GGs~LGTsR~~~d---~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~Vvg 268 (535)
.. .-+....|.+|+..++++++++|..++ +.++++..+++++|.||||||+++.++|..++++++++.++.-+++
T Consensus 186 vmgr~cg~lalv~~ia~~aD~i~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv~g 265 (666)
T KOG2440|consen 186 VMGRHCGYLALVAAIAGGADTIFIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLVVG 265 (666)
T ss_pred ehhhccchHHHHHHhhcCCCEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheeeec
Confidence 87 667777899999999999999999887 8899999999999999999999999999999999999999999999
Q ss_pred eccccccCccCCCcccCch--hHHHHHHHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCC---
Q 009394 269 IPKTIDNDIPIIDKSFGFD--TAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPES--- 343 (535)
Q Consensus 269 IPkTIDNDI~gtD~S~GFd--TAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~--- 343 (535)
+||||||||+-.+.++||| ||++..+++|.+++.+|.|+.+++.||++|||+|+++|++++||++..|+|++||.
T Consensus 266 ~p~TilGdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~l~~elr~~ 345 (666)
T KOG2440|consen 266 VPKTILGDVQRGGVPSAFDRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLASRDKDFCLAPELRGR 345 (666)
T ss_pred ceeeecCccccCCcccccchHHHHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHHHHHhcCccceeehhhhcch
Confidence 9999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------------CCCCC--CcchHHHHHHHHHHhCCcEEEEEecCCCchhhHHHhhhc-ccccccCCccc
Q 009394 344 ----------------------PFYLE--GPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIMHTM-DQQDASGNKLL 398 (535)
Q Consensus 344 ----------------------pf~l~--~~~~l~e~I~~rl~~~~~~vIVVaEGa~~~~~~~~~~~~-~~~Da~Gn~~l 398 (535)
||+.+ ..-..+.....+|++..|++++++|++++.++...+... ...|++++..+
T Consensus 346 ~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~d~~~~~~~ 425 (666)
T KOG2440|consen 346 KFTLNLNTYKILDVVDPRAEQDPFYGEIPGAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAKDALGELIW 425 (666)
T ss_pred hhhhhhhHHhhhhccccccccCCCCceeccceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhhhhhhhhHH
Confidence 88877 444566888899999999999999999987765543322 23599999999
Q ss_pred hhhHHHHHHHHHHHhCCcce-eEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEeCCeeeeeeH
Q 009394 399 QDVGLWISQKIRDHFGKKRK-MTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPF 477 (535)
Q Consensus 399 ~~ig~~L~~~I~~~~~~~~~-~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG~tG~mVgi~~~~~~~iPl 477 (535)
.|++.|+.+-.++++.++.. ....++||+|.|++|..+.++.|-.+|+.+++.++|.++++++++.+++++....+.|.
T Consensus 426 ~dv~~w~~~ggs~~gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~snn 505 (666)
T KOG2440|consen 426 KDVGLWLSQGGSALGTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSNN 505 (666)
T ss_pred HHhhcccccCchhheecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecCC
Confidence 99999999999988764321 35689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCcCCCChHHHHHHHHhcCCCCCCChHHhhhh
Q 009394 478 YRITERQNRVVITDRMWARLLSSTNQPSFLDPKKVKQS 515 (535)
Q Consensus 478 ~~v~~~~k~v~~~~~~w~~~l~~tgqp~f~~~~~~~~~ 515 (535)
-..++....++..+.+|.+++++|.||.|....+++..
T Consensus 506 vpgt~~s~gvdt~~N~~~~~~d~t~Q~a~~T~~~vf~~ 543 (666)
T KOG2440|consen 506 VPGTEFSLGVDTALNAWARVCDSTKQSAFGTKRRVFVV 543 (666)
T ss_pred ccccccccccchhHhhhhhhhhhccCCcccccceeEEE
Confidence 99999999999999999999999999999987765543
No 29
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-42 Score=380.44 Aligned_cols=350 Identities=21% Similarity=0.229 Sum_probs=303.6
Q ss_pred cccccchhhhccCCCCCCCCCCCCCccccccccccccChhHHHHHhhccc-----CCccccccccC----------Cccc
Q 009394 74 LEDVPHFSDYISDLPTHPNPLQDNPSYSVVKQHFVDVDDSVAQNIVVHQD-----SPRGRHFRRVG----------PREK 138 (535)
Q Consensus 74 ~e~V~~l~~~~p~~p~~~~pl~~n~~~~~~~~~~V~~t~~V~~~~~~~~~-----~~r~~~f~~ag----------pr~~ 138 (535)
.|||.|+++.+|+ .+.+|..+|+++++++..|..+..++. .++ ++|+.+|..++ |+..
T Consensus 293 ~eAI~a~l~~a~s------~~~g~~~VRlmgr~~~~it~~~tla~~-~~d~~l~~elr~~~f~~~~~~~~~~~~~~~~~~ 365 (666)
T KOG2440|consen 293 QEAINAALEEAES------AENGNGIVRLMGRESVHITLEATLASR-DKDFCLAPELRGRKFTLNLNTYKILDVVDPRAE 365 (666)
T ss_pred HHHHHHHHhhchh------hcccceeEEehhHHHHHHHHHHHHhcC-ccceeehhhhcchhhhhhhhHHhhhhccccccc
Confidence 5677777776655 589999999999999999999999976 344 46888888876 3332
Q ss_pred cccCCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccC
Q 009394 139 VYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSR 218 (535)
Q Consensus 139 ~~~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR 218 (535)
..+....++++|++.|-++.|||++++++++.+. +.++++|++.+||+||..+...++.|.+|..|..+||+.+||.|
T Consensus 366 ~~p~~~~~~~~ii~~g~~~~~lnaa~~~~v~~a~--~~G~~~~~i~~~~~gl~~d~~~~~~~~dv~~w~~~ggs~~gtk~ 443 (666)
T KOG2440|consen 366 QDPFYGEIPGAIGLFGAPAAGLNAAGHSVLRYAE--GAGQDVIAISNGFEGLAKDALGELIWKDVGLWLSQGGSALGTKR 443 (666)
T ss_pred cCCCCceeccceeeechhhhHHHHHHHHHHHHhh--hcCceeEeeccchhhhhhhhhhhhHHHHhhcccccCchhheecc
Confidence 2222233779999999999999999999999774 56789999999999999999999999999999999999999999
Q ss_pred CC---CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc-CCCeeEeeeccccccCccCCCcccCchhHHHHHH
Q 009394 219 GG---HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR-GLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQ 294 (535)
Q Consensus 219 ~~---~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~ 294 (535)
.. .+++.|..+|++++|++|+++||+.++.+...|+..+..+ ++++++|.||.|+.|++|+|++|.|.|||+|.++
T Consensus 444 ~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~snnvpgt~~s~gvdt~~N~~~ 523 (666)
T KOG2440|consen 444 ETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSNNVPGTEFSLGVDTALNAWA 523 (666)
T ss_pred cCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecCCccccccccccchhHhhhh
Confidence 72 3799999999999999999999999999988887765554 7899999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhC-CcEEEEEec
Q 009394 295 RAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN-GHMVIVIAE 373 (535)
Q Consensus 295 ~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~-~~~vIVVaE 373 (535)
+.++.+++.|..+++++|++|+||.+|||||..++|+. +++.+||||++|+++++++..+++..+++.. +..+++.+|
T Consensus 524 ~~~d~t~Q~a~~T~~~vf~~e~~gg~~gyla~~~~l~~-ga~~a~v~e~~~~~~~l~~~~~~~~~k~~~~~~~~l~~r~e 602 (666)
T KOG2440|consen 524 RVCDSTKQSAFGTKRRVFVVETMGGYSGYLATMTGLAP-GADAAYVPEEGFSIKDLRENAEHLAEKMRYGNPRGLQLRNE 602 (666)
T ss_pred hhhhhccCCcccccceeEEEEecCCCccceeccccccc-cccccccccccccHHHHHHHHHHHHHHhhhcCCCceEEeCC
Confidence 99999999999999999999999999999999999999 7999999999999998888889988888764 445999999
Q ss_pred CCCchhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHH
Q 009394 374 GAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAI 453 (535)
Q Consensus 374 Ga~~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV 453 (535)
|+...+.+ .+|.+.+.+.-+. + +..++..|||+|.|+.|+++||.++++||.+|+
T Consensus 603 ~a~~~~~t---------------------~~~~~~~~~~~~~--~--f~~~~~~~gh~qqgg~ps~~dr~~~~~m~~~a~ 657 (666)
T KOG2440|consen 603 GADANYTT---------------------LFLENIYSEEGKG--K--FQARTNVLGHIQQGGSPSPFDRNMGTKMAVKAI 657 (666)
T ss_pred CcchhhhH---------------------HHHHHHHhhhccc--c--cceeeccccceecCCCCChHHHHHHHHHHHHHH
Confidence 99876653 3566666554332 2 456777899999999999999999999999999
Q ss_pred HHHHc
Q 009394 454 HGAMA 458 (535)
Q Consensus 454 ~~a~a 458 (535)
+++..
T Consensus 658 ~~~~~ 662 (666)
T KOG2440|consen 658 ELITI 662 (666)
T ss_pred HHHHh
Confidence 98753
No 30
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=93.34 E-value=0.2 Score=50.96 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=42.8
Q ss_pred HHHHHHHhCC------cEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhH---HHHHHHH
Q 009394 226 IVDSIQDRGI------NQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTA---VEEAQRA 296 (535)
Q Consensus 226 i~~~l~~~~I------d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTA---v~~~~~a 296 (535)
.-+..++|++ |.+++||||||+-.|...+. ...++|+||-. -++||-|. .+.+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~-----~~~~PvlGIN~----------G~lGFL~~~~~~~e~~~~ 75 (246)
T PRK04761 11 LEELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR----------GSVGFLMNEYSEDDLLER 75 (246)
T ss_pred HHHHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc-----CCCCeEEEEeC----------CCCCcccCCCCHHHHHHH
Confidence 3445566777 99999999999976554432 34588999875 26899884 3555666
Q ss_pred HHHHHh
Q 009394 297 ISAAHV 302 (535)
Q Consensus 297 i~~i~~ 302 (535)
++++..
T Consensus 76 l~~~~~ 81 (246)
T PRK04761 76 IAAAEP 81 (246)
T ss_pred HHHhhc
Confidence 666543
No 31
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.97 E-value=0.47 Score=49.32 Aligned_cols=54 Identities=28% Similarity=0.298 Sum_probs=39.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH--HHHHHHHHHHHh
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV--EEAQRAISAAHV 302 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~ 302 (535)
+.|.+++||||||+-.|...+. ..++||+||-. -++||-|.+ +.+.++++++..
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA-----EYDKFVLGIHA----------GHLGFLTDITVDEAEKFFQAFFQ 119 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-----CCCCcEEEEeC----------CCcccCCcCCHHHHHHHHHHHHc
Confidence 6899999999999765544332 34678998853 379999884 566777777654
No 32
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.87 E-value=0.45 Score=48.93 Aligned_cols=56 Identities=29% Similarity=0.311 Sum_probs=38.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH--HHHHHHHHHHHh
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV--EEAQRAISAAHV 302 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~ 302 (535)
+.|.+++||||||+-.|...+. ..-.++|++||.. -++||-|.+ +.+.++++++..
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~~~---~~~~~iPilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHRYE---NQLDKVRFVGVHT----------GHLGFYTDWRPFEVDKLVIALAK 92 (265)
T ss_pred CCCEEEEECCcHHHHHHHHHhc---ccCCCCeEEEEeC----------CCceecccCCHHHHHHHHHHHHc
Confidence 3689999999999866554432 1114688999874 379999974 445666666654
No 33
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.79 E-value=1 Score=46.27 Aligned_cols=55 Identities=25% Similarity=0.328 Sum_probs=36.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCC-CeeEeeeccccccCccCCCcccCchhH--HHHHHHHHHHHHh
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGL-KVAVAGIPKTIDNDIPIIDKSFGFDTA--VEEAQRAISAAHV 302 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~-~i~VvgIPkTIDNDI~gtD~S~GFdTA--v~~~~~ai~~i~~ 302 (535)
+.|.+++||||||+-.|...+. .. .++++||.. +-++||-|. .+.+.++++++..
T Consensus 39 ~~D~vi~lGGDGT~L~a~~~~~-----~~~~~pilgIn~---------~G~lGFL~~~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 39 NANIIVSIGGDGTFLQAVRKTG-----FREDCLYAGIST---------KDQLGFYCDFHIDDLDKMIQAITK 96 (264)
T ss_pred CccEEEEECCcHHHHHHHHHhc-----ccCCCeEEeEec---------CCCCeEcccCCHHHHHHHHHHHHc
Confidence 3689999999999866554432 22 467888754 248999876 3555666666643
No 34
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.57 E-value=0.51 Score=48.45 Aligned_cols=63 Identities=22% Similarity=0.378 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCC-----cEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH--HHHHH-
Q 009394 224 SKIVDSIQDRGI-----NQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV--EEAQR- 295 (535)
Q Consensus 224 ~ki~~~l~~~~I-----d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~- 295 (535)
+++.+.++.+++ |.+++||||||+-.|...+. ..++||+||-. -++||-|.+ +.+.+
T Consensus 18 ~~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~-----~~~iPilGIN~----------G~lGFL~~~~~~~~~~~ 82 (259)
T PRK00561 18 PKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN-----CAGCKVVGINT----------GHLGFYTSFNETDLDQN 82 (259)
T ss_pred HHHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc-----CCCCcEEEEec----------CCCccccccCHHHHHHH
Confidence 344455555555 99999999999876654432 34688999862 279999964 44445
Q ss_pred HHHHHH
Q 009394 296 AISAAH 301 (535)
Q Consensus 296 ai~~i~ 301 (535)
.++.+.
T Consensus 83 ~~~~l~ 88 (259)
T PRK00561 83 FANKLD 88 (259)
T ss_pred HHHHHh
Confidence 455553
No 35
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.43 E-value=0.63 Score=48.85 Aligned_cols=55 Identities=31% Similarity=0.429 Sum_probs=40.8
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH--HHHHHHHHHHHhh
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV--EEAQRAISAAHVE 303 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~~ 303 (535)
+.|.++++|||||+-.|..... ...+||+||.. -++||-|.+ +.+.++++++...
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR-----AADVPVLGVNL----------GHVGFLAEAEAEDLDEAVERVVDR 128 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc-----cCCCcEEEEec----------CCCceeccCCHHHHHHHHHHHHcC
Confidence 6899999999999876655432 34578999975 378998875 5666777776543
No 36
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.31 E-value=0.71 Score=48.11 Aligned_cols=56 Identities=25% Similarity=0.381 Sum_probs=41.2
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH--HHHHHHHHHHHhhh
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV--EEAQRAISAAHVEA 304 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~~A 304 (535)
+.|.++++|||||+-.|...+. ..++||+||-. -++||-|.+ +.+.++++++...-
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVG-----NSNIPILGINT----------GRLGFLATVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEec----------CCCCcccccCHHHHHHHHHHHHcCC
Confidence 5899999999999866554432 34678999864 379999986 46677777775543
No 37
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.06 E-value=1.1 Score=45.63 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=36.6
Q ss_pred hCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHH--HHHHHHHHHHh
Q 009394 233 RGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVE--EAQRAISAAHV 302 (535)
Q Consensus 233 ~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~ai~~i~~ 302 (535)
.+.|.+++||||||+-.|.... ++||+||-. -++||-|..+ .+.++++++..
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~--------~~Pilgin~----------G~lGfl~~~~~~~~~~~l~~~~~ 93 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKV--------GTPLVGFKA----------GRLGFLSSYTLEEIDRFLEDLKN 93 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHc--------CCCEEEEeC----------CCCccccccCHHHHHHHHHHHHc
Confidence 3679999999999996554332 578898862 2699999754 34566666544
No 38
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.83 E-value=0.73 Score=48.11 Aligned_cols=54 Identities=28% Similarity=0.318 Sum_probs=39.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH--HHHHHHHHHHHh
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV--EEAQRAISAAHV 302 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~ 302 (535)
+.|.++++|||||+-.|..... ...+||+||-. -++||-|.+ +.+.++++++..
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~ 123 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGINQ----------GHLGFLTQIPREYMTDKLLPVLE 123 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----ccCCCEEEEec----------CCCeEeeccCHHHHHHHHHHHHc
Confidence 6899999999999976665432 34678999863 269999984 455666766653
No 39
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.74 E-value=0.96 Score=47.47 Aligned_cols=54 Identities=26% Similarity=0.354 Sum_probs=38.8
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH--HHHHHHHHHHHh
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV--EEAQRAISAAHV 302 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~ 302 (535)
+.|.+++||||||+-.|..... ..+++|+||-. -++||-|.+ +.+.++++++..
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~-----~~~iPilGIN~----------G~lGFLt~~~~~~~~~~l~~l~~ 123 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA-----PCGIPLLTINT----------GHLGFLTEAYLNQLDEAIDQVLA 123 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc-----CCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHHHc
Confidence 6899999999999876554432 35688999842 389999874 455566666543
No 40
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.42 E-value=1.3 Score=46.24 Aligned_cols=53 Identities=28% Similarity=0.511 Sum_probs=37.2
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHH--HHHHHHHHHH
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVE--EAQRAISAAH 301 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~ai~~i~ 301 (535)
+.|.++++|||||+-.|..... ..+++|+||-. -++||-|.++ .+.++++++.
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~-----~~~~Pilgin~----------G~lGFl~~~~~~~~~~~l~~i~ 117 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLA-----RYDIKVIGINR----------GNLGFLTDLDPDNALQQLSDVL 117 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCeEEEEEC----------CCCCcccccCHHHHHHHHHHHH
Confidence 6899999999999876654432 34578998863 3689998865 3445555553
No 41
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=87.12 E-value=0.38 Score=49.54 Aligned_cols=63 Identities=27% Similarity=0.542 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH--HHHHHHHHHHHh
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV--EEAQRAISAAHV 302 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~ 302 (535)
...+.+...+.|.++++|||||+..|..... ..++||+||+. -+.||-|.. +.+.+++..+..
T Consensus 67 ~~~~~~~~~~~D~ii~lGGDGT~L~~~~~~~-----~~~~Pilgin~----------G~lgfl~~~~~~~~~~~l~~~~~ 131 (285)
T PF01513_consen 67 NALEEMLEEGVDLIIVLGGDGTFLRAARLFG-----DYDIPILGINT----------GTLGFLTEFEPEDIEEALEKILA 131 (285)
T ss_dssp ECCHHHHCCCSSEEEEEESHHHHHHHHHHCT-----TST-EEEEEES----------SSSTSSSSEEGCGHHHHHHHHHH
T ss_pred hhhhhhcccCCCEEEEECCCHHHHHHHHHhc-----cCCCcEEeecC----------CCccccccCCHHHHHHHHHHHhc
Confidence 3445567789999999999999987765543 35789999995 266776653 445555555544
No 42
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=86.05 E-value=1.3 Score=49.55 Aligned_cols=54 Identities=31% Similarity=0.421 Sum_probs=39.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH--HHHHHHHHHHHh
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV--EEAQRAISAAHV 302 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~ 302 (535)
++|.+|+||||||+-.|..++. +..+||+||- --++||-|.+ +.+.++++++..
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~-----~~~iPILGIN----------~G~LGFLt~i~~~e~~~~Le~il~ 317 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK-----GPVPPVVPFS----------MGSLGFMTPFHSEQYRDCLDAILK 317 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe----------CCCcceecccCHHHHHHHHHHHHc
Confidence 6899999999999877665543 3457899883 2489999875 445566666643
No 43
>PRK13054 lipid kinase; Reviewed
Probab=84.78 E-value=5.8 Score=40.93 Aligned_cols=88 Identities=20% Similarity=0.300 Sum_probs=55.3
Q ss_pred CCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc--CCCeeEeeeccccccCccCCCcccCchhHHHHHHHHH
Q 009394 220 GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR--GLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAI 297 (535)
Q Consensus 220 ~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~--g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai 297 (535)
..+..++++...+.+.|.++++|||||+..+.. .+... +.++++..||.==-||+. +++|-..-.+.+.+.|
T Consensus 42 ~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~---~l~~~~~~~~~~lgiiP~GTgNdfa---r~lgi~~~~~~a~~~i 115 (300)
T PRK13054 42 KGDAARYVEEALALGVATVIAGGGDGTINEVAT---ALAQLEGDARPALGILPLGTANDFA---TAAGIPLEPDKALKLA 115 (300)
T ss_pred CCcHHHHHHHHHHcCCCEEEEECCccHHHHHHH---HHHhhccCCCCcEEEEeCCcHhHHH---HhcCCCCCHHHHHHHH
Confidence 345667777776778999999999999876542 22222 334678889988889986 3455544344443333
Q ss_pred HHHHhhhhcCcceEEEEEecCC
Q 009394 298 SAAHVEAESFENGIGVVKLMGR 319 (535)
Q Consensus 298 ~~i~~~A~S~~~rv~iVEvMGR 319 (535)
. ....+.|-+.++=+|
T Consensus 116 ~------~g~~~~iDlg~v~~~ 131 (300)
T PRK13054 116 I------EGRAQPIDLARVNDR 131 (300)
T ss_pred H------hCCceEEEEEEEcCc
Confidence 2 122345666666565
No 44
>PRK13337 putative lipid kinase; Reviewed
Probab=84.62 E-value=3.4 Score=42.68 Aligned_cols=90 Identities=22% Similarity=0.302 Sum_probs=56.9
Q ss_pred CCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHH
Q 009394 220 GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISA 299 (535)
Q Consensus 220 ~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~ 299 (535)
..+.+++++.+.+.+.|.|+++|||||...+.. .+...+..+++-.||.==-||+. +++|...-.+.+.+.+
T Consensus 43 ~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~---gl~~~~~~~~lgiiP~GT~NdfA---r~lgi~~~~~~a~~~i-- 114 (304)
T PRK13337 43 PGDATLAAERAVERKFDLVIAAGGDGTLNEVVN---GIAEKENRPKLGIIPVGTTNDFA---RALHVPRDIEKAADVI-- 114 (304)
T ss_pred CCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHH---HHhhCCCCCcEEEECCcCHhHHH---HHcCCCCCHHHHHHHH--
Confidence 356667777777788999999999999876553 22223445678889988888885 3555544344444333
Q ss_pred HHhhhhcCcceEEEEEecCCCc
Q 009394 300 AHVEAESFENGIGVVKLMGRYS 321 (535)
Q Consensus 300 i~~~A~S~~~rv~iVEvMGR~s 321 (535)
. .+..+.+-+.++-+|+.
T Consensus 115 -~---~g~~~~vDlg~vn~~~f 132 (304)
T PRK13337 115 -I---EGHTVPVDIGKANNRYF 132 (304)
T ss_pred -H---cCCeEEEEEEEECCEEE
Confidence 2 12234566666666553
No 45
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.40 E-value=1.8 Score=45.21 Aligned_cols=54 Identities=30% Similarity=0.441 Sum_probs=40.0
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH--HHHHHHHHHHHh
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV--EEAQRAISAAHV 302 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~ 302 (535)
+.|.++++|||||+-.+..... ..+++|+||.. -++||-|.+ +.+.++++.+..
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~----------G~lGFl~~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR----------GRLGFLTDIRPDELEFKLAEVLD 117 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeC----------CcccccccCCHHHHHHHHHHHHc
Confidence 6899999999999876654332 34678999985 269999874 456677777654
No 46
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=83.44 E-value=1.8 Score=47.29 Aligned_cols=116 Identities=25% Similarity=0.442 Sum_probs=67.6
Q ss_pred CCeeEEEEccCCCCCchhH-HHHHHHHHHHHhcCC-----------eEEEEEccccccccC-C---CeeeCCHhHHhchh
Q 009394 144 DDVHACIVTCGGLCPGLNT-VIREIVCGLYYMYGV-----------HKVLGIEGGYRGFYA-R---NTIPLTPKIVNGIH 207 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNa-vIr~vv~~l~~~~~~-----------~~V~Gi~~G~~GL~~-~---~~~~L~~~~V~~i~ 207 (535)
++.|||+||+||.-|=-|. -|.+.-. ..|+. .+..-+|.||.--+- . .+++|+. +..+.
T Consensus 222 ~~akIALVTsgGivPkgnPd~i~ss~A---~~yg~Y~i~g~~~l~~~~~~~~HgGYD~~~~n~Dpn~v~PlD~--LreLe 296 (431)
T TIGR01918 222 SKAKIAVVTSGGIVPKDNPDRIESSSA---SKYGMYDITGLDRLEGGVYETAHGGFDPAYANADPDRVVPVDV--LRDYE 296 (431)
T ss_pred hhCEEEEEecCCcccCCCCCcccccCC---CcceeEeCCCccccCccceEEeccccChHHHhcCCCeeeeHHH--HHHHH
Confidence 4569999999999998883 4432110 01111 123334556654431 1 1334432 22222
Q ss_pred ccc--C----cce-----eccCC--CCcHHHHHHHHHHhCCcEEEEecCCcc-hHHHHHHHHHHHHcCCCe
Q 009394 208 KRG--G----TIL-----GTSRG--GHDTSKIVDSIQDRGINQVYVLGGDGT-QKGASAIFEEIRRRGLKV 264 (535)
Q Consensus 208 ~~G--G----s~L-----GTsR~--~~d~~ki~~~l~~~~Id~LvvIGGdgS-~~~A~~L~~~~~~~g~~i 264 (535)
..| | .+. ||++. ...-.+|++.|++-++|+++....=|| .+.+..+.+++++.|+++
T Consensus 297 kEG~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPv 367 (431)
T TIGR01918 297 KEGKIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPV 367 (431)
T ss_pred HcCCcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCE
Confidence 222 1 111 22221 234578999999999999999988777 455666789999988653
No 47
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=83.43 E-value=34 Score=33.44 Aligned_cols=127 Identities=7% Similarity=0.032 Sum_probs=68.7
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCC-CcHHH
Q 009394 147 HACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGG-HDTSK 225 (535)
Q Consensus 147 ~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~d~~k 225 (535)
+|||+...-..|-...+++++.+.+.....+..++ +..+... .....
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~ 48 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVT--------------------------------VVSADYDLNKQVS 48 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEE--------------------------------EccCCCCHHHHHH
Confidence 47888877677888888888888775421111111 1111111 22346
Q ss_pred HHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHHHhhhh
Q 009394 226 IVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAE 305 (535)
Q Consensus 226 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~A~ 305 (535)
+++.+...++|++++.+.+... .....+++.+++ ++||.+=. +.+..+.++|+|-. .....+.+.+.....
T Consensus 49 ~i~~~~~~~~dgiIi~~~~~~~--~~~~i~~~~~~~--ipvv~~~~----~~~~~~~~V~~d~~-~~g~~~~~~l~~~~~ 119 (271)
T cd06321 49 QIDNFIAAKVDLILLNAVDSKG--IAPAVKRAQAAG--IVVVAVDV----AAEGADATVTTDNV-QAGEISCQYLADRLG 119 (271)
T ss_pred HHHHHHHhCCCEEEEeCCChhH--hHHHHHHHHHCC--CeEEEecC----CCCCccceeeechH-HHHHHHHHHHHHHhC
Confidence 7777888999999998765431 122334555555 55666632 22233456777642 233333333333323
Q ss_pred cCcceEEEEE
Q 009394 306 SFENGIGVVK 315 (535)
Q Consensus 306 S~~~rv~iVE 315 (535)
.+ ++|.++-
T Consensus 120 g~-~~i~~i~ 128 (271)
T cd06321 120 GK-GNVAILN 128 (271)
T ss_pred CC-ceEEEEe
Confidence 43 5677774
No 48
>PRK13055 putative lipid kinase; Reviewed
Probab=83.31 E-value=3.1 Score=43.77 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=43.3
Q ss_pred CCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchh
Q 009394 220 GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDT 288 (535)
Q Consensus 220 ~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdT 288 (535)
..+.+++++...+.+.|.|+++|||||+..+. +.+...+..+++..||.==-||+. +++|..+
T Consensus 45 ~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evv---ngl~~~~~~~~LgiiP~GTgNdfA---r~Lgi~~ 107 (334)
T PRK13055 45 PNSAKNEAKRAAEAGFDLIIAAGGDGTINEVV---NGIAPLEKRPKMAIIPAGTTNDYA---RALKIPR 107 (334)
T ss_pred CccHHHHHHHHhhcCCCEEEEECCCCHHHHHH---HHHhhcCCCCcEEEECCCchhHHH---HHcCCCC
Confidence 34556677666677899999999999987544 222222334667889988888886 3556544
No 49
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=83.31 E-value=1.5 Score=46.69 Aligned_cols=50 Identities=36% Similarity=0.660 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccC
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDND 276 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND 276 (535)
+|+.-.++.+.++|+|-+++.|||||.+.+. +.. +-++||.|||.=.-|=
T Consensus 87 ~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa---~av---~~~vPvLGipaGvk~~ 136 (355)
T COG3199 87 EDTINAVRRMVERGVDLIVFAGGDGTARDVA---EAV---GADVPVLGIPAGVKNY 136 (355)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCCccHHHHH---hhc---cCCCceEeecccccee
Confidence 6788999999999999999999999987644 332 4578999999765543
No 50
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=82.95 E-value=9.1 Score=38.95 Aligned_cols=139 Identities=16% Similarity=0.230 Sum_probs=76.7
Q ss_pred eeccCCCCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccC--ccCCCcccCchhHHH
Q 009394 214 LGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDND--IPIIDKSFGFDTAVE 291 (535)
Q Consensus 214 LGTsR~~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND--I~gtD~S~GFdTAv~ 291 (535)
|.++....+.++.++.|.++++|++|+.+-......-..+. +. .+|||.+=...+++ ++ ++..| =.+
T Consensus 36 l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~----~~--~iPvV~~~~~~~~~~~~~----~V~~D-~~~ 104 (279)
T PF00532_consen 36 LCNTGDDEEKEEYIELLLQRRVDGIILASSENDDEELRRLI----KS--GIPVVLIDRYIDNPEGVP----SVYID-NYE 104 (279)
T ss_dssp EEEETTTHHHHHHHHHHHHTTSSEEEEESSSCTCHHHHHHH----HT--TSEEEEESS-SCTTCTSC----EEEEE-HHH
T ss_pred EecCCCchHHHHHHHHHHhcCCCEEEEecccCChHHHHHHH----Hc--CCCEEEEEeccCCcccCC----EEEEc-chH
Confidence 43444445556899999999999999997666633323222 22 47788887777766 22 33333 122
Q ss_pred HHHHHHHHHHhhhhcCcce-EEEEEe-------cCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHh
Q 009394 292 EAQRAISAAHVEAESFENG-IGVVKL-------MGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE 363 (535)
Q Consensus 292 ~~~~ai~~i~~~A~S~~~r-v~iVEv-------MGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~ 363 (535)
.+.++.+.+. ..+| ++ |.++-. .-|..||..+....-- ..+-.+|.+..++.+ .=.+.+++.++.
T Consensus 105 a~~~a~~~Li--~~Gh-~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl-~~~~~~i~~~~~~~~---~g~~~~~~ll~~ 177 (279)
T PF00532_consen 105 AGYEATEYLI--KKGH-RRPIAFIGGPEDSSTSRERLQGYRDALKEAGL-PIDEEWIFEGDFDYE---SGYEAARELLES 177 (279)
T ss_dssp HHHHHHHHHH--HTTC-CSTEEEEEESTTTHHHHHHHHHHHHHHHHTTS-CEEEEEEEESSSSHH---HHHHHHHHHHHT
T ss_pred HHHHHHHHHH--hccc-CCeEEEEecCcchHHHHHHHHHHHHHHHHcCC-CCCcccccccCCCHH---HHHHHHHHHHhh
Confidence 2223333333 2344 56 666654 3366688765443211 235556666666654 334555655665
Q ss_pred CCc--EEEE
Q 009394 364 NGH--MVIV 370 (535)
Q Consensus 364 ~~~--~vIV 370 (535)
+.. +|+.
T Consensus 178 ~p~idai~~ 186 (279)
T PF00532_consen 178 HPDIDAIFC 186 (279)
T ss_dssp STT-SEEEE
T ss_pred CCCCEEEEE
Confidence 544 5554
No 51
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.84 E-value=1.8 Score=44.77 Aligned_cols=53 Identities=28% Similarity=0.361 Sum_probs=36.5
Q ss_pred hCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHH--HHHHHHHHHH
Q 009394 233 RGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVE--EAQRAISAAH 301 (535)
Q Consensus 233 ~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~ai~~i~ 301 (535)
.+.|.++++|||||+-.|..+. ...++|+|||. -++||-|.++ .+.++++++.
T Consensus 56 ~~~d~vi~iGGDGTlL~a~~~~------~~~~pi~gIn~----------G~lGFl~~~~~~~~~~~l~~i~ 110 (277)
T PRK03708 56 MDVDFIIAIGGDGTILRIEHKT------KKDIPILGINM----------GTLGFLTEVEPEETFFALSRLL 110 (277)
T ss_pred cCCCEEEEEeCcHHHHHHHHhc------CCCCeEEEEeC----------CCCCccccCCHHHHHHHHHHHH
Confidence 4789999999999997655432 33688999985 2568888755 3344444443
No 52
>PRK11914 diacylglycerol kinase; Reviewed
Probab=82.29 E-value=2.3 Score=43.91 Aligned_cols=69 Identities=30% Similarity=0.523 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchh-HHHHHHHHH
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDT-AVEEAQRAI 297 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdT-Av~~~~~ai 297 (535)
.+.+++++...+.+.|.++++|||||...+. +.+. +.++++..||.==-||+. +++|..+ -.+.+.+++
T Consensus 51 ~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv---~~l~--~~~~~lgiiP~GT~NdfA---r~lg~~~~~~~~a~~~i 120 (306)
T PRK11914 51 HDARHLVAAALAKGTDALVVVGGDGVISNAL---QVLA--GTDIPLGIIPAGTGNDHA---REFGIPTGDPEAAADVI 120 (306)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHHHh---HHhc--cCCCcEEEEeCCCcchhH---HHcCCCCCCHHHHHHHH
Confidence 4566777777778899999999999987654 2332 345678889998899998 5788765 355555544
No 53
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=82.03 E-value=20 Score=37.57 Aligned_cols=171 Identities=16% Similarity=0.196 Sum_probs=90.6
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CCcHH
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GHDTS 224 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~~ 224 (535)
-.||++..--.-|-....++++-..+.. ++ ..+ +|..+.. .+..+
T Consensus 59 ~~Ig~i~p~~~~~~~~~i~~gi~~~~~~-~g-y~~--------------------------------~l~~~~~~~~~e~ 104 (333)
T COG1609 59 KTIGLVVPDITNPFFAEILKGIEEAARE-AG-YSL--------------------------------LLANTDDDPEKER 104 (333)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEE--------------------------------EEECCCCCHHHHH
Confidence 3678777544446677777777776643 22 122 2444443 34467
Q ss_pred HHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccc-cCcc--CCCcccCchhHHHHHHHHHHHHH
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTID-NDIP--IIDKSFGFDTAVEEAQRAISAAH 301 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID-NDI~--gtD~S~GFdTAv~~~~~ai~~i~ 301 (535)
++.+.|..+++|++|+.| ..... .+.+.+.+.+++ +|.|=.+.+ .+++ ++|.--|...|++...+
T Consensus 105 ~~~~~l~~~~vdGiIi~~-~~~~~---~~~~~l~~~~~P--~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~------ 172 (333)
T COG1609 105 EYLETLLQKRVDGLILLG-ERPND---SLLELLAAAGIP--VVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIE------ 172 (333)
T ss_pred HHHHHHHHcCCCEEEEec-CCCCH---HHHHHHHhcCCC--EEEEeCCCccCCCCEEEEChHHHHHHHHHHHHH------
Confidence 889999999999999999 22222 233444455655 554444333 2232 23333333333333222
Q ss_pred hhhhcCcceEEEEEe-------cCCCccHHHHHHhHhcCCcc--EEecCCCCCCCCCcchHHHHHHHHHHhC---CcEEE
Q 009394 302 VEAESFENGIGVVKL-------MGRYSGFIAMYATIASRDVD--CCLIPESPFYLEGPGGLFEYIEKRLKEN---GHMVI 369 (535)
Q Consensus 302 ~~A~S~~~rv~iVEv-------MGR~sG~LAl~aaLAs~~ad--~ilIPE~pf~l~~~~~l~e~I~~rl~~~---~~~vI 369 (535)
.+| +++.++-. .-|..||+.+.... +.. -.++.+..|+.+ .-.+.+.+-+... --+++
T Consensus 173 ---~G~-~~i~~i~~~~~~~~~~~R~~Gf~~al~~~---~~~~~~~~i~~~~~~~~---~g~~~~~~ll~~~~~~ptAif 242 (333)
T COG1609 173 ---LGH-RRIAFIGGPLDSSASRERLEGYRAALREA---GLPINPEWIVEGDFSEE---SGYEAAERLLARGEPRPTAIF 242 (333)
T ss_pred ---CCC-ceEEEEeCCCccccHhHHHHHHHHHHHHC---CCCCCcceEEecCCChH---HHHHHHHHHHhcCCCCCcEEE
Confidence 233 45666543 23446777654432 333 356667767554 4445555555443 23555
Q ss_pred EEe
Q 009394 370 VIA 372 (535)
Q Consensus 370 VVa 372 (535)
+.+
T Consensus 243 ~~n 245 (333)
T COG1609 243 CAN 245 (333)
T ss_pred EcC
Confidence 433
No 54
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=81.57 E-value=2.5 Score=44.05 Aligned_cols=53 Identities=28% Similarity=0.447 Sum_probs=38.7
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhH--HHHHHHHHHHHH
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTA--VEEAQRAISAAH 301 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTA--v~~~~~ai~~i~ 301 (535)
+.|.++++|||||+..|..... +.+++++||-. -++||-|. .+.+.++++.+.
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~pilGIn~----------G~lGFL~~~~~~~~~~~l~~~~ 117 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLA-----PYGVPLIGINH----------GRLGFITDIPLDDMQETLPPML 117 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC----------CCccccccCCHHHHHHHHHHHH
Confidence 5899999999999976654432 34678999862 37899996 455666777664
No 55
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=81.54 E-value=7.9 Score=43.12 Aligned_cols=96 Identities=14% Similarity=0.229 Sum_probs=61.0
Q ss_pred eEEEEEccccccccCCCeeeCCHhHHhchhcccCc---ceeccCCCCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHH
Q 009394 178 HKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGT---ILGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIF 254 (535)
Q Consensus 178 ~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs---~LGTsR~~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~ 254 (535)
.+++-|.|=..|=- .-..+-++.+..+....|- +.-|.+. .+..++++.+...+.|.+|++|||||+..+.
T Consensus 112 kr~lvIvNP~SGkg--~a~k~~~~~v~~~L~~~gi~~~v~~T~~~-ghA~~la~~~~~~~~D~VV~vGGDGTlnEVv--- 185 (481)
T PLN02958 112 KRLLVFVNPFGGKK--SASKIFFDVVKPLLEDADIQLTIQETKYQ-LHAKEVVRTMDLSKYDGIVCVSGDGILVEVV--- 185 (481)
T ss_pred cEEEEEEcCCCCCc--chhHHHHHHHHHHHHHcCCeEEEEeccCc-cHHHHHHHHhhhcCCCEEEEEcCCCHHHHHH---
Confidence 47777888777632 2222222346655555452 3334433 4556677777777899999999999986543
Q ss_pred HHHHHc-----CCCeeEeeeccccccCccC
Q 009394 255 EEIRRR-----GLKVAVAGIPKTIDNDIPI 279 (535)
Q Consensus 255 ~~~~~~-----g~~i~VvgIPkTIDNDI~g 279 (535)
+.+..+ +.++++-.||.==-||+.-
T Consensus 186 NGL~~~~~~~~~~~~pLGiIPaGTgNdfAr 215 (481)
T PLN02958 186 NGLLEREDWKTAIKLPIGMVPAGTGNGMAK 215 (481)
T ss_pred HHHhhCccccccccCceEEecCcCcchhhh
Confidence 222222 4468889999988999863
No 56
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.47 E-value=2 Score=44.90 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=38.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHH---HHHHHHHHh
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEA---QRAISAAHV 302 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~---~~ai~~i~~ 302 (535)
+.|.++++|||||+..+..... +..++++||.. .-++||-|..... .++++++..
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~-----~~~~pv~gin~---------~G~lGFL~~~~~~~~~~~~l~~i~~ 114 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLA-----PHDIPILSVNV---------GGHLGFLTHPRDLLQDESVWDRLQE 114 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhc-----cCCCCEEEEec---------CCcceEecCchhhcchHHHHHHHHc
Confidence 6899999999999876554332 34577888875 3489999976432 466666554
No 57
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=80.99 E-value=2.5 Score=46.21 Aligned_cols=117 Identities=26% Similarity=0.416 Sum_probs=68.0
Q ss_pred CCeeEEEEccCCCCCchhH-HHHHHHHHHHHhcC-----------CeEEEEEccccccccC-C---CeeeCCHhHHhchh
Q 009394 144 DDVHACIVTCGGLCPGLNT-VIREIVCGLYYMYG-----------VHKVLGIEGGYRGFYA-R---NTIPLTPKIVNGIH 207 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNa-vIr~vv~~l~~~~~-----------~~~V~Gi~~G~~GL~~-~---~~~~L~~~~V~~i~ 207 (535)
++.|||++|+||.-|--|. -|.+.- + ..|+ ..+..-+|.||.--+- . .+++|+. +..+.
T Consensus 222 ~~akIALvTsgGivPkgnPd~i~s~~--A-~~yg~Y~i~~~~~l~~~~~~~~HgGYD~~~~n~Dpn~v~PlD~--LreLe 296 (431)
T TIGR01917 222 SKAKIAIVTSGGIVPKGNPDHIESSS--A-SKYGKYDIDGFDDLSEADHETAHGGHDPTYANEDADRVIPVDV--LRDLE 296 (431)
T ss_pred hhCEEEEEecCCcccCCCCCcccccc--C-CCceEEeCCccCcCCccceEEeccccChHHHhcCCCeeeeHHH--HHHHH
Confidence 4579999999999997775 232110 0 0111 1233445566655432 1 1334432 33332
Q ss_pred ccc--Cc----ce-----eccCC--CCcHHHHHHHHHHhCCcEEEEecCCcc-hHHHHHHHHHHHHcCCCee
Q 009394 208 KRG--GT----IL-----GTSRG--GHDTSKIVDSIQDRGINQVYVLGGDGT-QKGASAIFEEIRRRGLKVA 265 (535)
Q Consensus 208 ~~G--Gs----~L-----GTsR~--~~d~~ki~~~l~~~~Id~LvvIGGdgS-~~~A~~L~~~~~~~g~~i~ 265 (535)
..| |+ +. ||++. ...-++|++.|++-++|+++..-.=|| .+.+..+.+++++.|+++.
T Consensus 297 ~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV 368 (431)
T TIGR01917 297 KEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVV 368 (431)
T ss_pred HcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEE
Confidence 222 11 11 22222 234578999999999999999977676 4555667899999886543
No 58
>PLN02727 NAD kinase
Probab=80.68 E-value=2.2 Score=50.77 Aligned_cols=54 Identities=30% Similarity=0.396 Sum_probs=40.2
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH--HHHHHHHHHHHh
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV--EEAQRAISAAHV 302 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~ 302 (535)
++|.+|+||||||+-.|..+.. +..+||+||-.= ++||-|-+ +.+.+.++.+..
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~-----~~~iPILGINlG----------rLGFLTdi~~ee~~~~L~~Il~ 798 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFR-----GAVPPVVSFNLG----------SLGFLTSHYFEDFRQDLRQVIH 798 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEeCC----------CccccccCCHHHHHHHHHHHHc
Confidence 6899999999999977766543 345788988542 89999965 455677776654
No 59
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=79.13 E-value=59 Score=30.80 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=73.0
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHHH
Q 009394 147 HACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSKI 226 (535)
Q Consensus 147 ~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ki 226 (535)
|||++..+-..|-.+.+++++-..+.. .+ .++.-+ .+....+...+.
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~-~g-~~l~~~-------------------------------~~~~~~~~~~~~ 47 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKA-AG-YQVLLA-------------------------------NSQNDAEKQLSA 47 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH-cC-CeEEEE-------------------------------eCCCCHHHHHHH
Confidence 589999877788888888888776643 22 111100 011111234567
Q ss_pred HHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHHHhhhhc
Q 009394 227 VDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAES 306 (535)
Q Consensus 227 ~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~A~S 306 (535)
++.+.+.++|++++.+.+.+... ..+.+.+.+ +++|.+-.+.++ .....++++|.. +....+.+.+....
T Consensus 48 ~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~~~--ip~v~~~~~~~~--~~~~~~v~~d~~-~~~~~~~~~l~~~g-- 117 (264)
T cd01537 48 LENLIARGVDGIIIAPSDLTAPT---IVKLARKAG--IPVVLVDRDIPD--GDRVPSVGSDNE-QAGYLAGEHLAEKG-- 117 (264)
T ss_pred HHHHHHcCCCEEEEecCCCcchh---HHHHhhhcC--CCEEEeccCCCC--CcccceEecCcH-HHHHHHHHHHHHhc--
Confidence 77778889999999988766543 234444444 567777666553 122345666544 33344444444332
Q ss_pred CcceEEEEEec
Q 009394 307 FENGIGVVKLM 317 (535)
Q Consensus 307 ~~~rv~iVEvM 317 (535)
.++|.++--.
T Consensus 118 -~~~i~~i~~~ 127 (264)
T cd01537 118 -HRRIALLAGP 127 (264)
T ss_pred -CCcEEEEECC
Confidence 4567777543
No 60
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.10 E-value=2.9 Score=47.41 Aligned_cols=54 Identities=31% Similarity=0.455 Sum_probs=39.0
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH--HHHHHHHHHHHh
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV--EEAQRAISAAHV 302 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~ 302 (535)
++|.+|+||||||+-.|..... ...+||+||-. -++||-|.+ +.+.++++++..
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGin~----------G~lGFL~~~~~~~~~~~l~~~~~ 403 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN-----GEEIPIICINM----------GTVGFLTEFSKEEIFKAIDSIIS 403 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC----------CCCCcCcccCHHHHHHHHHHHHc
Confidence 6899999999999876654432 34678999864 379999975 455666666543
No 61
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=78.82 E-value=9.1 Score=39.31 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=42.4
Q ss_pred ccCCCCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc--CCCeeEeeeccccccCcc
Q 009394 216 TSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR--GLKVAVAGIPKTIDNDIP 278 (535)
Q Consensus 216 TsR~~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~--g~~i~VvgIPkTIDNDI~ 278 (535)
+.+...+.+++++.+.+.+.|.++++|||||+..+.. .+... +..+++..||.==-||+.
T Consensus 34 ~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~n---gl~~~~~~~~~~lgiiP~GTgNdfA 95 (293)
T TIGR03702 34 VTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVAT---ALAQIRDDAAPALGLLPLGTANDFA 95 (293)
T ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHH---HHHhhCCCCCCcEEEEcCCchhHHH
Confidence 3344456677777777788999999999999876542 22222 334568889988889885
No 62
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.90 E-value=2.1 Score=44.30 Aligned_cols=52 Identities=25% Similarity=0.512 Sum_probs=35.8
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHH--HHHHHHHHH
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVE--EAQRAISAA 300 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~ai~~i 300 (535)
+.|.+++||||||+-.|...+. ..++||+||-. -++||-|.++ .+.+.+.++
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~-----~~~~PilgIn~----------G~lGFL~~~~~~~~~~~l~~~ 95 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGINR----------GNLGFLTDIDPKNAYEQLEAC 95 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHH
Confidence 6899999999999976654432 34678999852 3699988753 344445443
No 63
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=77.56 E-value=87 Score=31.89 Aligned_cols=87 Identities=14% Similarity=0.215 Sum_probs=53.2
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTS 224 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 224 (535)
...||++...-.-|-.+.++.++...+.. ++ ..++-+ -+....+...
T Consensus 64 ~~~Igvv~~~~~~~~~~~i~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~~ 110 (342)
T PRK10014 64 SGVIGLIVRDLSAPFYAELTAGLTEALEA-QG-RMVFLL-------------------------------QGGKDGEQLA 110 (342)
T ss_pred CCEEEEEeCCCccchHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------eCCCCHHHHH
Confidence 34899998776778888888888877653 22 222110 0111122345
Q ss_pred HHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
..++.|...++|++++.+.+.... .+.+.+++.++ |+|.+
T Consensus 111 ~~~~~l~~~~vdgiIi~~~~~~~~---~~~~~l~~~~i--PvV~~ 150 (342)
T PRK10014 111 QRFSTLLNQGVDGVVIAGAAGSSD---DLREMAEEKGI--PVVFA 150 (342)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCcH---HHHHHHhhcCC--CEEEE
Confidence 778888899999999998765322 23344455564 45543
No 64
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=75.52 E-value=11 Score=39.48 Aligned_cols=109 Identities=21% Similarity=0.251 Sum_probs=64.5
Q ss_pred EEEEEccccccccCCCeeeCCHhHHhc-hhcccCcce--eccCCCCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHH
Q 009394 179 KVLGIEGGYRGFYARNTIPLTPKIVNG-IHKRGGTIL--GTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFE 255 (535)
Q Consensus 179 ~V~Gi~~G~~GL~~~~~~~L~~~~V~~-i~~~GGs~L--GTsR~~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~ 255 (535)
++..|.|-..| +++ ..-.|..+.. +...|.+.. =|... .+..++++.+...+.|.+++.|||||...+ ..
T Consensus 4 ~~~~i~Np~sG--~~~-~~~~~~~~~~~l~~~g~~~~~~~t~~~-g~a~~~a~~a~~~~~D~via~GGDGTv~ev---in 76 (301)
T COG1597 4 KALLIYNPTSG--KGK-AKKLLREVEELLEEAGHELSVRVTEEA-GDAIEIAREAAVEGYDTVIAAGGDGTVNEV---AN 76 (301)
T ss_pred eEEEEEccccc--ccc-hhhHHHHHHHHHHhcCCeEEEEEeecC-ccHHHHHHHHHhcCCCEEEEecCcchHHHH---HH
Confidence 56666666666 222 2233444433 334444321 11111 367888888888899999999999998643 22
Q ss_pred HHHHcCCCeeEeeeccccccCccCCCcccCchh-HHHHHHHHHH
Q 009394 256 EIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDT-AVEEAQRAIS 298 (535)
Q Consensus 256 ~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdT-Av~~~~~ai~ 298 (535)
.+.+.+... +--||.==-||+. +++|... ....+.+.+.
T Consensus 77 gl~~~~~~~-LgilP~GT~NdfA---r~Lgip~~~~~~Al~~i~ 116 (301)
T COG1597 77 GLAGTDDPP-LGILPGGTANDFA---RALGIPLDDIEAALELIK 116 (301)
T ss_pred HHhcCCCCc-eEEecCCchHHHH---HHcCCCchhHHHHHHHHH
Confidence 333334332 7778887778875 3667666 3555555443
No 65
>PRK13059 putative lipid kinase; Reviewed
Probab=74.88 E-value=8.5 Score=39.70 Aligned_cols=62 Identities=24% Similarity=0.425 Sum_probs=42.0
Q ss_pred HHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHH
Q 009394 230 IQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAI 297 (535)
Q Consensus 230 l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai 297 (535)
..+.+.+.++++|||||...+. +.+.+.+.++++..||.==-||+. +++|...-...+.+.+
T Consensus 52 ~~~~~~d~vi~~GGDGTv~evv---~gl~~~~~~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~~i 113 (295)
T PRK13059 52 DIDESYKYILIAGGDGTVDNVV---NAMKKLNIDLPIGILPVGTANDFA---KFLGMPTDIGEACEQI 113 (295)
T ss_pred HhhcCCCEEEEECCccHHHHHH---HHHHhcCCCCcEEEECCCCHhHHH---HHhCCCCCHHHHHHHH
Confidence 3356889999999999987653 333334556788889988888875 3566554444444433
No 66
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.74 E-value=4.6 Score=41.76 Aligned_cols=52 Identities=27% Similarity=0.349 Sum_probs=36.4
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH--HHHHHHHHHHHhh
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV--EEAQRAISAAHVE 303 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~~ 303 (535)
+.|.++++|||||+-.|... +.+||+||-. -++||-|.+ +.+.++++++...
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~--------~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQR--------AKGPILGINM----------GGLGFLTEIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHH--------cCCCEEEEEC----------CCCccCcccCHHHHHHHHHHHHcC
Confidence 68999999999998654432 2247888843 378998874 4556666666543
No 67
>PRK00861 putative lipid kinase; Reviewed
Probab=72.98 E-value=7.4 Score=40.03 Aligned_cols=69 Identities=22% Similarity=0.408 Sum_probs=48.1
Q ss_pred CCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHH
Q 009394 220 GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRA 296 (535)
Q Consensus 220 ~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~a 296 (535)
..+..++++...+.+.|.++++|||||+..+. +.+... ++++..||.==-||+. +++|...-...+.+.
T Consensus 43 ~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv---~~l~~~--~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~~ 111 (300)
T PRK00861 43 EIGADQLAQEAIERGAELIIASGGDGTLSAVA---GALIGT--DIPLGIIPRGTANAFA---AALGIPDTIEEACRT 111 (300)
T ss_pred CCCHHHHHHHHHhcCCCEEEEECChHHHHHHH---HHHhcC--CCcEEEEcCCchhHHH---HHcCCCCCHHHHHHH
Confidence 34667777777778899999999999987654 233222 4668889987788875 466766544444443
No 68
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=72.84 E-value=1.1e+02 Score=30.62 Aligned_cols=86 Identities=10% Similarity=0.100 Sum_probs=49.7
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHHH
Q 009394 147 HACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSKI 226 (535)
Q Consensus 147 ~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ki 226 (535)
.|||+...-.-|-...++.++...+.. ++ ..+.- ..+........++
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~~~ 47 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKE-LG-AEVIV-------------------------------QNANGDPAKQISQ 47 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHH-cC-CEEEE-------------------------------ECCCCCHHHHHHH
Confidence 367777655667777777777766643 22 22221 1111111234577
Q ss_pred HHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 227 VDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 227 ~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
++.+...++|++++.+.+.+. ...+.+++.+.+ ++||.+
T Consensus 48 i~~~~~~~vdgiii~~~~~~~--~~~~l~~l~~~~--ipvV~~ 86 (288)
T cd01538 48 IENMIAKGVDVLVIAPVDGEA--LASAVEKAADAG--IPVIAY 86 (288)
T ss_pred HHHHHHcCCCEEEEecCChhh--HHHHHHHHHHCC--CCEEEE
Confidence 777888999999998866542 223445555555 556654
No 69
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=70.51 E-value=7.9 Score=40.01 Aligned_cols=54 Identities=35% Similarity=0.514 Sum_probs=38.1
Q ss_pred hCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHH--HHHHHHHHHH
Q 009394 233 RGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVE--EAQRAISAAH 301 (535)
Q Consensus 233 ~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~ai~~i~ 301 (535)
...+.++++|||||+-.+..... ...++|+||=. -++||-|-.+ .+.++++.+.
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~-----~~~~pilgin~----------G~lGFLt~~~~~~~~~~~~~~~ 109 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA-----RLDIPVLGINL----------GHLGFLTDFEPDELEKALDALL 109 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhc-----cCCCCEEEEeC----------CCcccccccCHHHHHHHHHHHh
Confidence 67899999999999987776543 23478888742 3899999886 2344444443
No 70
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=69.81 E-value=1.1e+02 Score=29.47 Aligned_cols=42 Identities=26% Similarity=0.380 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
+..+.++.+.+.++|++++.+.+.+-. ..+.+.+.+ +++|.+
T Consensus 42 ~~~~~i~~~~~~~vdgiii~~~~~~~~----~~~~~~~~~--ipvV~~ 83 (266)
T cd06278 42 DLDAALRQLLQYRVDGVIVTSGTLSSE----LAEECRRNG--IPVVLI 83 (266)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCHH----HHHHHhhcC--CCEEEE
Confidence 345677888899999999988764432 234444455 456665
No 71
>PLN02929 NADH kinase
Probab=69.14 E-value=4.7 Score=42.42 Aligned_cols=64 Identities=25% Similarity=0.315 Sum_probs=39.6
Q ss_pred hCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeecc---ccccCc-cC----CCcccCchhHH--HHHHHHHHHHHh
Q 009394 233 RGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPK---TIDNDI-PI----IDKSFGFDTAV--EEAQRAISAAHV 302 (535)
Q Consensus 233 ~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPk---TIDNDI-~g----tD~S~GFdTAv--~~~~~ai~~i~~ 302 (535)
.+.|.+|++|||||+-.|.... ...+||+||-. +.+.-- .. ...++||-+++ +.+.++++++..
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~------~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFL------DDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLF 136 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHc------CCCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHc
Confidence 3578999999999987655432 23578999843 222210 00 11389999984 444556666543
No 72
>PRK13057 putative lipid kinase; Reviewed
Probab=68.31 E-value=8.1 Score=39.52 Aligned_cols=85 Identities=26% Similarity=0.429 Sum_probs=50.9
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHH
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAA 300 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 300 (535)
.+.+++++. ...+.|.++++|||||+..+. +.+.. .++++..||.==-||+. +++|...-...+.+.+
T Consensus 38 ~~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~---~~l~~--~~~~lgiiP~GT~Ndfa---r~Lg~~~~~~~a~~~i--- 105 (287)
T PRK13057 38 DDLSEVIEA-YADGVDLVIVGGGDGTLNAAA---PALVE--TGLPLGILPLGTANDLA---RTLGIPLDLEAAARVI--- 105 (287)
T ss_pred HHHHHHHHH-HHcCCCEEEEECchHHHHHHH---HHHhc--CCCcEEEECCCCccHHH---HHcCCCCCHHHHHHHH---
Confidence 345555555 356789999999999997654 22322 34678999988888885 3455543343333333
Q ss_pred HhhhhcCcceEEEEEecCCC
Q 009394 301 HVEAESFENGIGVVKLMGRY 320 (535)
Q Consensus 301 ~~~A~S~~~rv~iVEvMGR~ 320 (535)
. .++.+.+-+.++-+|+
T Consensus 106 ~---~~~~~~vD~g~~~~~~ 122 (287)
T PRK13057 106 A---TGQVRRIDLGWVNGHY 122 (287)
T ss_pred H---cCCeEEeeEEEECCEE
Confidence 2 1223456565655543
No 73
>PRK12361 hypothetical protein; Provisional
Probab=67.31 E-value=15 Score=41.19 Aligned_cols=54 Identities=20% Similarity=0.343 Sum_probs=39.6
Q ss_pred CCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCcc
Q 009394 220 GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIP 278 (535)
Q Consensus 220 ~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~ 278 (535)
..+..++++...+.+.|.++++|||||...+. +.+.. .++++-.||.==-||+.
T Consensus 283 ~~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~---~~l~~--~~~~lgiiP~GTgNdfA 336 (547)
T PRK12361 283 EISAEALAKQARKAGADIVIACGGDGTVTEVA---SELVN--TDITLGIIPLGTANALS 336 (547)
T ss_pred CccHHHHHHHHHhcCCCEEEEECCCcHHHHHH---HHHhc--CCCCEEEecCCchhHHH
Confidence 34566777777778899999999999987654 23322 34667889987788876
No 74
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=67.22 E-value=7.2 Score=41.32 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=45.1
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc--------------CCCeeEeeeccccccCcc
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR--------------GLKVAVAGIPKTIDNDIP 278 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~--------------g~~i~VvgIPkTIDNDI~ 278 (535)
.+.+++++.++++++|.+|-|||--+++.|..++-..... +-.+++|.||-|--+--.
T Consensus 65 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGsE 136 (366)
T PF00465_consen 65 EDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGSE 136 (366)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSGC
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcccccc
Confidence 4578999999999999999999999999998887655421 112789999998654433
No 75
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=65.12 E-value=1.4e+02 Score=28.96 Aligned_cols=41 Identities=12% Similarity=0.245 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEee
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAG 268 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~Vvg 268 (535)
.+.++.+...++|++++.+.+.... ....+++.+++ ++||.
T Consensus 46 ~~~~~~l~~~~vdgiii~~~~~~~~--~~~l~~~~~~~--iPvV~ 86 (275)
T cd06317 46 AAQVEDLIAQKVDGIILWPTDGQAY--IPGLRKAKQAG--IPVVI 86 (275)
T ss_pred HHHHHHHHHcCCCEEEEecCCcccc--HHHHHHHHHCC--CcEEE
Confidence 4567777888999999988764321 12224445555 44553
No 76
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=64.80 E-value=12 Score=39.21 Aligned_cols=51 Identities=25% Similarity=0.262 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHH--cCCCeeEeeeccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR--RGLKVAVAGIPKT 272 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~--~g~~i~VvgIPkT 272 (535)
..+++++.+++.+.|.++-|||--+++.|..++-.... ..-.+++|.||-|
T Consensus 66 ~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 66 VVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 46789999999999999999999999998876543322 1224789999998
No 77
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=64.37 E-value=10 Score=40.08 Aligned_cols=51 Identities=16% Similarity=0.336 Sum_probs=42.5
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccC
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDND 276 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND 276 (535)
+..+++++.+++.++|.++-|||--.++.|..++... .+++|.||-|-..+
T Consensus 63 ~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-----~~p~i~VPTT~gtg 113 (347)
T cd08172 63 ENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-----GVPVITVPTLAATC 113 (347)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----CCCEEEecCccccC
Confidence 4578899999999999999999999999988886542 46799999997543
No 78
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=63.92 E-value=26 Score=38.75 Aligned_cols=93 Identities=17% Similarity=0.240 Sum_probs=60.1
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcH
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDT 223 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~ 223 (535)
-+.+|||||| ++. ||||-+...+..+++..+|+-+.-=. +|=.. .+.+
T Consensus 134 ~p~~IGVITS--~tg---AairDIl~~~~rR~P~~~viv~pt~V---------------------QG~~A------~~eI 181 (440)
T COG1570 134 FPKKIGVITS--PTG---AALRDILHTLSRRFPSVEVIVYPTLV---------------------QGEGA------AEEI 181 (440)
T ss_pred CCCeEEEEcC--Cch---HHHHHHHHHHHhhCCCCeEEEEeccc---------------------cCCCc------HHHH
Confidence 3459999997 443 68999999888888866776432211 11100 1223
Q ss_pred HHHHHHHHHhC-CcEEEEecCCcchHHHHHHHHHHHHc---CCCeeEee
Q 009394 224 SKIVDSIQDRG-INQVYVLGGDGTQKGASAIFEEIRRR---GLKVAVAG 268 (535)
Q Consensus 224 ~ki~~~l~~~~-Id~LvvIGGdgS~~~A~~L~~~~~~~---g~~i~Vvg 268 (535)
-+.++.+.+.+ +|.|||.=|-||...--.+.+|...+ ..+||||.
T Consensus 182 v~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvIS 230 (440)
T COG1570 182 VEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVIS 230 (440)
T ss_pred HHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEe
Confidence 45555556665 99999999999998766555553332 45677764
No 79
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=63.84 E-value=1.7e+02 Score=29.58 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=46.6
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CCcHH
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GHDTS 224 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~~ 224 (535)
..|||+...-..|=.+.++.++-..+.. ++ .+++- -++.. .....
T Consensus 60 ~~Igvv~~~~~~~f~~~l~~~i~~~~~~-~g-~~~~i--------------------------------~~~~~~~~~~~ 105 (329)
T TIGR01481 60 TTVGVIIPDISNIYYAELARGIEDIATM-YK-YNIIL--------------------------------SNSDEDPEKEV 105 (329)
T ss_pred CEEEEEeCCCCchhHHHHHHHHHHHHHH-cC-CEEEE--------------------------------EeCCCCHHHHH
Confidence 4799988654556666777777665543 22 22211 01111 11234
Q ss_pred HHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
++++.|..+++|++++.+...+. .+.+.+.+.+ +|+|.+
T Consensus 106 ~~~~~l~~~~vdGiIi~~~~~~~----~~~~~l~~~~--iPvV~~ 144 (329)
T TIGR01481 106 QVLNTLLSKQVDGIIFMGGTITE----KLREEFSRSP--VPVVLA 144 (329)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCh----HHHHHHHhcC--CCEEEE
Confidence 56777888999999998754332 1223444445 455544
No 80
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=63.72 E-value=14 Score=38.94 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=43.5
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccC
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPI 279 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~g 279 (535)
+..+++++.+++.+.|.+|-|||--.++.|..++. . ++ +++|.||-|..+|-..
T Consensus 65 ~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~-~--~~--~p~i~iPTT~~t~s~~ 118 (339)
T cd08173 65 EEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAY-K--LG--IPFISVPTAASHDGIA 118 (339)
T ss_pred HHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHH-h--cC--CCEEEecCcccCCccc
Confidence 45678889999999999999999999998887762 2 34 6799999998766443
No 81
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=63.01 E-value=13 Score=39.32 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=40.7
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTID 274 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID 274 (535)
++.+++++.+++++.|.+|-|||--.++.|..++-. ..+++|.||-|--
T Consensus 64 ~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~-----~~~P~iaIPTTag 112 (351)
T cd08170 64 AEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY-----LGAPVVIVPTIAS 112 (351)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH-----cCCCEEEeCCccc
Confidence 346788899999999999999999999998888643 2478999999943
No 82
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=62.74 E-value=14 Score=39.15 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=43.2
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc-------------CCCeeEeeeccccccCc
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR-------------GLKVAVAGIPKTIDNDI 277 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-------------g~~i~VvgIPkTIDNDI 277 (535)
+..+++++.+++.+.|.+|-|||--.++.|..++-..... .-.+++|.||-|-..+-
T Consensus 67 ~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgs 136 (370)
T cd08551 67 SNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGS 136 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchh
Confidence 3567899999999999999999999999988776543110 11478999999865443
No 83
>PRK06186 hypothetical protein; Validated
Probab=62.15 E-value=14 Score=37.47 Aligned_cols=58 Identities=22% Similarity=0.371 Sum_probs=37.2
Q ss_pred CCcEEEEecCCcc--hHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHHHhhhhcC
Q 009394 234 GINQVYVLGGDGT--QKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESF 307 (535)
Q Consensus 234 ~Id~LvvIGGdgS--~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~A~S~ 307 (535)
++|+++|.||+|. ..|.....+++++++ +|+.|| |+|++.|+=+.++-+-. ..+|.|.
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~~--iP~LGI-------------ClGmQ~avIe~arnv~g-~~dA~s~ 112 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTAIRFARENG--IPFLGT-------------CGGFQHALLEYARNVLG-WADAAHA 112 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHHHHHHHHcC--CCeEee-------------chhhHHHHHHHHhhhcC-CcCCCcC
Confidence 5799999999997 444555666766544 345554 99999876555443311 3345553
No 84
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=60.58 E-value=9.5 Score=40.27 Aligned_cols=50 Identities=24% Similarity=0.413 Sum_probs=40.2
Q ss_pred CcHHHHHHHHHHhCC---cEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeecccc
Q 009394 221 HDTSKIVDSIQDRGI---NQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTI 273 (535)
Q Consensus 221 ~d~~ki~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 273 (535)
+..+++++.+++.++ |.++-|||--.++.|..++... .+| +++|.||-|.
T Consensus 69 ~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTT~ 121 (345)
T cd08195 69 ETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATY-MRG--IDFIQIPTTL 121 (345)
T ss_pred HHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHH-hcC--CCeEEcchhH
Confidence 356788999999998 9999999998888887665422 345 6799999997
No 85
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=59.95 E-value=1.7e+02 Score=28.43 Aligned_cols=47 Identities=11% Similarity=0.280 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeecccc
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTI 273 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 273 (535)
...+++.|...++|++++.+.+.+.. ....+++.+++ ++||.+-..+
T Consensus 46 ~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~~~~~ 92 (275)
T cd06320 46 QLSIAENMINKGYKGLLFSPISDVNL--VPAVERAKKKG--IPVVNVNDKL 92 (275)
T ss_pred HHHHHHHHHHhCCCEEEECCCChHHh--HHHHHHHHHCC--CeEEEECCCC
Confidence 34678888889999998876554321 12234555555 5677654433
No 86
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=59.38 E-value=17 Score=38.17 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=40.6
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTID 274 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID 274 (535)
+..+++++.+++.+.|.+|-|||--.++.|..++-.. .+++|.||-|..
T Consensus 64 ~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~-----~~p~i~IPTtat 112 (337)
T cd08177 64 EVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRT-----GLPIIAIPTTLS 112 (337)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----cCCEEEEcCCch
Confidence 3567889999999999999999999999988876432 477999998853
No 87
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=59.27 E-value=14 Score=39.27 Aligned_cols=62 Identities=26% Similarity=0.397 Sum_probs=44.8
Q ss_pred CcHHHHHHHHHHhCC---cEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchh
Q 009394 221 HDTSKIVDSIQDRGI---NQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDT 288 (535)
Q Consensus 221 ~d~~ki~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdT 288 (535)
+..+++++.+++.++ |.++-|||--.++.|..++-. ..++ +++|.||-|. +..+|.++|--+
T Consensus 76 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~-~~~g--ip~i~IPTT~---~s~~ds~~~~k~ 140 (358)
T PRK00002 76 ETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAAT-YMRG--IRFIQVPTTL---LAQVDSSVGGKT 140 (358)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHH-hcCC--CCEEEcCchh---hhccccCcCCce
Confidence 346788889999887 999999999999888776532 1234 6799999996 333454555333
No 88
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=58.77 E-value=11 Score=40.11 Aligned_cols=64 Identities=33% Similarity=0.483 Sum_probs=46.1
Q ss_pred CcHHHHHHHHHHhCC----cEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH
Q 009394 221 HDTSKIVDSIQDRGI----NQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV 290 (535)
Q Consensus 221 ~d~~ki~~~l~~~~I----d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv 290 (535)
+..+++++.+.+.++ |.++-|||--.+..|..++-.. .+| +++|.||-|. +..+|-+.|.-+++
T Consensus 71 ~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~-~rg--~p~i~VPTT~---lA~vD~~~g~K~~i 138 (354)
T cd08199 71 DTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLY-RRG--TPYVRIPTTL---VGLIDAGVGIKTGV 138 (354)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEEcCcc---ceeeecCCCCceEE
Confidence 346788888999998 9999999998888877765422 235 6799999996 33345455544443
No 89
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=58.62 E-value=22 Score=38.02 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcC--------------CCeeEeeeccccccC
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRG--------------LKVAVAGIPKTIDND 276 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g--------------~~i~VvgIPkTIDND 276 (535)
..+++++.+++.++|.+|-|||--.++.|..++-.....+ -.+++|.||-|--.+
T Consensus 71 ~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTG 139 (374)
T cd08189 71 NVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTG 139 (374)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccc
Confidence 4678999999999999999999999999887765432211 126899999885433
No 90
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=58.41 E-value=18 Score=38.37 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=40.9
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccC
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDND 276 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND 276 (535)
+..+++++.+++.+.|.++-|||--.++.|..++ + .++ +++|.||-|...|
T Consensus 74 ~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA-~--~rg--ip~I~IPTT~~td 124 (350)
T PRK00843 74 EEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAA-Y--RLG--IPFISVPTAASHD 124 (350)
T ss_pred HHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHH-H--hcC--CCEEEeCCCccCC
Confidence 3467899999999999999999998888887776 2 234 6799999996433
No 91
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=58.38 E-value=1.9e+02 Score=28.31 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q 009394 223 TSKIVDSIQDRGINQVYVLGGD 244 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGd 244 (535)
..++++.|...++|++++.+.+
T Consensus 45 ~~~~~~~l~~~~vdgiii~~~~ 66 (260)
T cd06304 45 YEPNLRQLAAQGYDLIFGVGFG 66 (260)
T ss_pred HHHHHHHHHHcCCCEEEECCcc
Confidence 4567788889999999998755
No 92
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=57.44 E-value=18 Score=37.64 Aligned_cols=53 Identities=21% Similarity=0.392 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccC
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDND 276 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND 276 (535)
+..+++++.+++.+.|.++-|||--.++.|..++-... ++ +++|.||-|...+
T Consensus 65 ~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~-~~--~p~i~iPTt~~tg 117 (332)
T cd07766 65 EEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN-RG--LPIIIVPTTAATG 117 (332)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc-CC--CCEEEEeCCCchh
Confidence 34678889999999999999999999998887765432 24 6799999986543
No 93
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=57.24 E-value=18 Score=36.88 Aligned_cols=51 Identities=24% Similarity=0.433 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEee-eccccccCcc
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAG-IPKTIDNDIP 278 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~Vvg-IPkTIDNDI~ 278 (535)
...++...+.+.|.++++|||||+..+..- +.... +.+.+| ||.==-||+.
T Consensus 47 ~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~---l~~~~-~~~~lgiiP~Gt~N~~a 98 (293)
T TIGR00147 47 ARYVEEARKFGVDTVIAGGGDGTINEVVNA---LIQLD-DIPALGILPLGTANDFA 98 (293)
T ss_pred HHHHHHHHhcCCCEEEEECCCChHHHHHHH---HhcCC-CCCcEEEEcCcCHHHHH
Confidence 344444556689999999999999765432 22212 223444 9987778875
No 94
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=57.18 E-value=22 Score=38.18 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc--------------CCCeeEeeeccc
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR--------------GLKVAVAGIPKT 272 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~--------------g~~i~VvgIPkT 272 (535)
+..+++++.+++.+.|.++-|||--.++.|..++-.+... ...+++|.||-|
T Consensus 71 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 136 (383)
T cd08186 71 DQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLT 136 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCC
Confidence 3467899999999999999999999999988776543211 113678888877
No 95
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=57.12 E-value=13 Score=33.31 Aligned_cols=65 Identities=22% Similarity=0.327 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHhC-CcEEEEecCCcchHHHHHHHHHHHHcCC--CeeEeeeccccccCccCCCcccCchhHHHH
Q 009394 222 DTSKIVDSIQDRG-INQVYVLGGDGTQKGASAIFEEIRRRGL--KVAVAGIPKTIDNDIPIIDKSFGFDTAVEE 292 (535)
Q Consensus 222 d~~ki~~~l~~~~-Id~LvvIGGdgS~~~A~~L~~~~~~~g~--~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~ 292 (535)
..+.+....+..+ .+.++++|||||+..+. ..+.+... ++++..||.==-||+. +++|+.+-...
T Consensus 41 ~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv---~~l~~~~~~~~~~l~iiP~GT~N~~a---r~lg~~~~~~~ 108 (130)
T PF00781_consen 41 HAEALARILALDDYPDVIVVVGGDGTLNEVV---NGLMGSDREDKPPLGIIPAGTGNDFA---RSLGIPSDPEA 108 (130)
T ss_dssp HHHHHHHHHHHTTS-SEEEEEESHHHHHHHH---HHHCTSTSSS--EEEEEE-SSS-HHH---HHTT--SSHHH
T ss_pred hHHHHHHHHhhccCccEEEEEcCccHHHHHH---HHHhhcCCCccceEEEecCCChhHHH---HHcCCCCCcHH
Confidence 3444444333333 38999999999997543 33333333 4589999987778875 36677666655
No 96
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=56.62 E-value=2.2e+02 Score=28.61 Aligned_cols=70 Identities=9% Similarity=0.170 Sum_probs=44.1
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTS 224 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 224 (535)
...||++...-.-|-.+.++.++-..+.. ++ .+++-.. +........
T Consensus 56 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~ 102 (327)
T PRK10423 56 TRTIGMLITASTNPFYSELVRGVERSCFE-RG-YSLVLCN-------------------------------TEGDEQRMN 102 (327)
T ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHH-cC-CEEEEEe-------------------------------CCCCHHHHH
Confidence 34799888665667788888888777753 22 2222100 000112234
Q ss_pred HHHHHHHHhCCcEEEEecCCcch
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQ 247 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~ 247 (535)
+.++.|...++|++++.+.+.+.
T Consensus 103 ~~~~~l~~~~vdGiI~~~~~~~~ 125 (327)
T PRK10423 103 RNLETLMQKRVDGLLLLCTETHQ 125 (327)
T ss_pred HHHHHHHHcCCCEEEEeCCCcch
Confidence 67778888999999999876543
No 97
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=56.32 E-value=22 Score=37.41 Aligned_cols=49 Identities=20% Similarity=0.421 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHhCC---cEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeecccc
Q 009394 222 DTSKIVDSIQDRGI---NQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTI 273 (535)
Q Consensus 222 d~~ki~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 273 (535)
..+++++.+++++. |.++.|||--.++.|..++-.. .++ +++|.||-|.
T Consensus 66 ~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~~--~p~i~VPTT~ 117 (344)
T TIGR01357 66 TVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATY-MRG--IRFIQVPTTL 117 (344)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHH-ccC--CCEEEecCch
Confidence 46788899999888 8999999999999887776322 234 6799999997
No 98
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=55.17 E-value=25 Score=37.56 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHH
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIF 254 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~ 254 (535)
+..+++++.+++.++|.+|-|||--+++.|..++
T Consensus 68 ~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia 101 (375)
T cd08179 68 ETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMW 101 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 3467889999999999999999999999998876
No 99
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=53.86 E-value=25 Score=37.64 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc---------------CCCeeEeeeccc
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR---------------GLKVAVAGIPKT 272 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~---------------g~~i~VvgIPkT 272 (535)
+..+++++.+++.+.|.++-|||--.++.|..++-..... ...+++|.||-|
T Consensus 73 ~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 73 TVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 3467899999999999999999999999987765322111 123789999988
No 100
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=53.84 E-value=26 Score=37.47 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHH-------------cCCCeeEeeeccc
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR-------------RGLKVAVAGIPKT 272 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-------------~g~~i~VvgIPkT 272 (535)
+..+++++.+++.++|.+|-|||--.++.|..++-.+.. ....+++|.||-|
T Consensus 67 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 67 ESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 346788999999999999999999999998877521110 1234789999988
No 101
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=53.84 E-value=2.2e+02 Score=27.69 Aligned_cols=90 Identities=11% Similarity=0.144 Sum_probs=54.9
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHHH
Q 009394 147 HACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSKI 226 (535)
Q Consensus 147 ~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ki 226 (535)
.|||+...-..|-.+.+++++.+.+.+ ++ ..++-. .+....+...++
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~~~~ 47 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRA-AG-YSLLIA-------------------------------NSLNDPERELEI 47 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------eCCCChHHHHHH
Confidence 378888776778888899998887754 32 233210 011111234577
Q ss_pred HHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 009394 227 VDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTID 274 (535)
Q Consensus 227 ~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID 274 (535)
++.|.++++|++++.+++.... .+.+.+++++ ++||.+=...+
T Consensus 48 i~~l~~~~vdgii~~~~~~~~~---~~~~~~~~~~--ipvV~i~~~~~ 90 (269)
T cd06281 48 LRSFEQRRMDGIIIAPGDERDP---ELVDALASLD--LPIVLLDRDMG 90 (269)
T ss_pred HHHHHHcCCCEEEEecCCCCcH---HHHHHHHhCC--CCEEEEecccC
Confidence 8889999999999998864322 2334455555 45665543333
No 102
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=53.17 E-value=2.6e+02 Score=28.40 Aligned_cols=70 Identities=7% Similarity=0.133 Sum_probs=44.4
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTS 224 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 224 (535)
...||++...-..+=...+++++-..+.. ++ .+++-+. +....+...
T Consensus 59 ~~~i~vi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~ 105 (341)
T PRK10703 59 TKSIGLLATSSEAPYFAEIIEAVEKNCYQ-KG-YTLILCN-------------------------------AWNNLEKQR 105 (341)
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHHHH
Confidence 34899998776777788888888776653 33 2322110 011112234
Q ss_pred HHHHHHHHhCCcEEEEecCCcch
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQ 247 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~ 247 (535)
+.++.+...++|++++.+++...
T Consensus 106 ~~i~~l~~~~vdgiii~~~~~~~ 128 (341)
T PRK10703 106 AYLSMLAQKRVDGLLVMCSEYPE 128 (341)
T ss_pred HHHHHHHHcCCCEEEEecCCCCH
Confidence 66778889999999999876443
No 103
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=53.07 E-value=37 Score=36.40 Aligned_cols=207 Identities=16% Similarity=0.238 Sum_probs=110.4
Q ss_pred CCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCC---eeeCCHhHHhchhcccCcceeccCC
Q 009394 143 SDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARN---TIPLTPKIVNGIHKRGGTILGTSRG 219 (535)
Q Consensus 143 ~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~---~~~L~~~~V~~i~~~GGs~LGTsR~ 219 (535)
...+||.|+=+|| |.|++|..+++.- -.+-+.+.+.-..++|-... -+.+......++..-+--.+|-.-.
T Consensus 9 ~~~~~I~VIGvGg---~G~n~v~~m~~~~---~~gve~ia~nTD~q~L~~~~a~~ki~iG~~~t~GlGaGa~P~vG~~aA 82 (338)
T COG0206 9 SLKARIKVIGVGG---AGGNAVNRMIEEG---VEGVEFIAINTDAQALKSSKADRKILIGESITRGLGAGANPEVGRAAA 82 (338)
T ss_pred ccCceEEEEEeCC---cchHHHHHHHHhh---hCceEEEEeccCHHHHhccccCeEEEeccceeeccCCCCCcHHHHHHH
Confidence 4567999999998 5667777776643 23458899888888886433 1222111111110000001111111
Q ss_pred CCcHHHHHHHHHHhCCcEEEEecCCcchH---HHHHHHHHHHHcCC-CeeEeeeccccccCccCCCcccCchhHHHHHHH
Q 009394 220 GHDTSKIVDSIQDRGINQVYVLGGDGTQK---GASAIFEEIRRRGL-KVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQR 295 (535)
Q Consensus 220 ~~d~~ki~~~l~~~~Id~LvvIGGdgS~~---~A~~L~~~~~~~g~-~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ 295 (535)
.++.++|.+.|+ +.|.+|++=|.|--+ +|-.+++.++++|. -+.|+..|-+-.-- .-.+.+.+
T Consensus 83 ee~~~~I~~~l~--g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~~EG~-----------~r~~~A~~ 149 (338)
T COG0206 83 EESIEEIEEALK--GADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPFSFEGS-----------PRMENAEE 149 (338)
T ss_pred HHHHHHHHHHhc--cCCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecchhcCc-----------hHHHHHHH
Confidence 245677777774 577888775544332 25567777777663 35555555442211 33455667
Q ss_pred HHHHHHhhhhcC---cceEEEEEecCCCccHHHHHHh-------HhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhCC
Q 009394 296 AISAAHVEAESF---ENGIGVVKLMGRYSGFIAMYAT-------IASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENG 365 (535)
Q Consensus 296 ai~~i~~~A~S~---~~rv~iVEvMGR~sG~LAl~aa-------LAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~~ 365 (535)
-|..++..+-+. +| .-++|......-|-|...+ +.. -.|++..| --..+ .++.++..++..|
T Consensus 150 gi~~L~~~~DtlIvi~N-dkll~~~~~~~~~~Af~~ad~vl~~~v~~-i~e~I~~~-glinv-----DfaDv~~vm~~~G 221 (338)
T COG0206 150 GIEELREVVDTLIVIPN-DKLLKGKDKTPIAEAFNEADDVLGNAVKG-ITELITKP-GLVNV-----DFADVRTVMKGGG 221 (338)
T ss_pred HHHHHHHhCCcEEEEec-HHHHhccCcccHHHHHHHHHHHHHHHHHH-HHHHhccC-ceEee-----cHHHHHHHHhcCC
Confidence 777777655432 11 2234555534444444332 111 23444444 11122 3466777777788
Q ss_pred cEEEEEecCCC
Q 009394 366 HMVIVIAEGAG 376 (535)
Q Consensus 366 ~~vIVVaEGa~ 376 (535)
.+.+=+.+..+
T Consensus 222 ~A~mG~g~~~~ 232 (338)
T COG0206 222 FALMGIGRASG 232 (338)
T ss_pred ceeEEEeeccc
Confidence 88887777765
No 104
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=53.03 E-value=1.6e+02 Score=28.36 Aligned_cols=41 Identities=20% Similarity=0.417 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
..+.++.|...++|++++++.+.+.. ..+.+++++ +++|.+
T Consensus 44 ~~~~~~~l~~~~vdgiii~~~~~~~~----~~~~l~~~~--iPvv~~ 84 (268)
T cd06273 44 EYAQARKLLERGVDGLALIGLDHSPA----LLDLLARRG--VPYVAT 84 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHH----HHHHHHhCC--CCEEEE
Confidence 34667778888999999998765432 223444455 556654
No 105
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=53.03 E-value=16 Score=32.82 Aligned_cols=42 Identities=33% Similarity=0.477 Sum_probs=30.4
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCC---eeEeeeccccccCcc
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLK---VAVAGIPKTIDNDIP 278 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~---i~VvgIPkTIDNDI~ 278 (535)
..+.++++|||||...+. ..+.+.... +++.-||.==-||+.
T Consensus 49 ~~d~vvv~GGDGTi~~vv---n~l~~~~~~~~~~plgiiP~GTgNdfa 93 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVL---NALDKRELPLPEPPVAVLPLGTGNDLA 93 (124)
T ss_pred cCCEEEEEccccHHHHHH---HHHHhcccccCCCcEEEeCCCChhHHH
Confidence 467999999999997653 333333322 678999988789985
No 106
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=53.01 E-value=1.4e+02 Score=29.73 Aligned_cols=85 Identities=13% Similarity=0.003 Sum_probs=49.3
Q ss_pred eEEEEccCCC-CCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHH
Q 009394 147 HACIVTCGGL-CPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSK 225 (535)
Q Consensus 147 ~iaIvtsGG~-apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~k 225 (535)
||+|+....+ ..|+...++.+++.+........++....+.......... ++..............
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 67 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQ-------------EVVRVIVLDNPLDYRR 67 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcc-------------cceeeeecCCchhHHH
Confidence 6889987766 7899999999999886543323444433333222111100 1111111111234567
Q ss_pred HHHHHHHhCCcEEEEecCC
Q 009394 226 IVDSIQDRGINQVYVLGGD 244 (535)
Q Consensus 226 i~~~l~~~~Id~LvvIGGd 244 (535)
+.+.+++.+.|.+++.-..
T Consensus 68 ~~~~~~~~~~dii~~~~~~ 86 (366)
T cd03822 68 AARAIRLSGPDVVVIQHEY 86 (366)
T ss_pred HHHHHhhcCCCEEEEeecc
Confidence 7788899999988775533
No 107
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=52.86 E-value=1.9e+02 Score=26.76 Aligned_cols=137 Identities=10% Similarity=0.073 Sum_probs=67.8
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccC---ccCCCcccCchhHHHHHHHHHH
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDND---IPIIDKSFGFDTAVEEAQRAIS 298 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND---I~gtD~S~GFdTAv~~~~~ai~ 298 (535)
+..++++.+...++++++..+.+..... +.+.+.+.+ +++|.+=.+.+.. -...-..+.+..+...+++.+.
T Consensus 46 ~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~~~~~~--ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 120 (269)
T cd01391 46 RALEALRDLIQQGVDGIIGPPSSSSALA---VVELAAAAG--IPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYLA 120 (269)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCHHHHH---HHHHHHHcC--CcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHHH
Confidence 4567777788889999988877755432 344455555 5677664443321 1111233344445555555443
Q ss_pred HHHhhhhcCcceEEEEEecCCCccHHHHH----HhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhC--CcEEEEEe
Q 009394 299 AAHVEAESFENGIGVVKLMGRYSGFIAMY----ATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN--GHMVIVIA 372 (535)
Q Consensus 299 ~i~~~A~S~~~rv~iVEvMGR~sG~LAl~----aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~--~~~vIVVa 372 (535)
... ++++.++=.-.. ....... .+++..+.....+.+.+.+.+ ...+.+.+.+++. ..+|++.+
T Consensus 121 ~~~------~~~i~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~i~~~~ 190 (269)
T cd01391 121 EKG------WKRVALIYGDDG-AYGRERLEGFKAALKKAGIEVVAIEYGDLDTE---KGFQALLQLLKAAPKPDAIFACN 190 (269)
T ss_pred HhC------CceEEEEecCCc-chhhHHHHHHHHHHHhcCcEEEeccccCCCcc---ccHHHHHHHHhcCCCCCEEEEcC
Confidence 332 356777643332 2222222 233332333333333333321 3556666677654 34555554
Q ss_pred c
Q 009394 373 E 373 (535)
Q Consensus 373 E 373 (535)
.
T Consensus 191 ~ 191 (269)
T cd01391 191 D 191 (269)
T ss_pred c
Confidence 4
No 108
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=52.73 E-value=32 Score=37.15 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHH
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIF 254 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~ 254 (535)
..+++++.+++.++|.+|-|||--+++.|..++
T Consensus 66 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 66 TVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 467889999999999999999999999988775
No 109
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=52.56 E-value=26 Score=33.67 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=40.3
Q ss_pred CCcHHHHHHHHHH---hCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccc
Q 009394 220 GHDTSKIVDSIQD---RGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKT 272 (535)
Q Consensus 220 ~~d~~ki~~~l~~---~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkT 272 (535)
.-|..-+++.++- .++|.++++-||+-+. .|.+.++++|..+-++|.|+.
T Consensus 88 ~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~---~Lv~~lre~G~~V~v~g~~~~ 140 (160)
T TIGR00288 88 DVDVRMAVEAMELIYNPNIDAVALVTRDADFL---PVINKAKENGKETIVIGAEPG 140 (160)
T ss_pred cccHHHHHHHHHHhccCCCCEEEEEeccHhHH---HHHHHHHHCCCEEEEEeCCCC
Confidence 4677777777766 6999999999999996 466777888998888887754
No 110
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=52.49 E-value=24 Score=37.27 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCcc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIP 278 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~ 278 (535)
..+++++.+++.+.|.+|-|||--.++.|..++.. + .+++|.||-|-..+-.
T Consensus 65 ~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~---~--~~p~i~VPTtagtgse 116 (349)
T cd08550 65 EVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR---L--DKPIVIVPTIASTCAA 116 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH---c--CCCEEEeCCccccCcc
Confidence 46788999999999999999999999998888643 2 4679999998544433
No 111
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=51.91 E-value=26 Score=37.35 Aligned_cols=46 Identities=26% Similarity=0.405 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKT 272 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkT 272 (535)
..+++++.+++++.|.+|-|||--.++.|..++-. ..+++|.||-|
T Consensus 72 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~-----~~~p~i~IPTt 117 (366)
T PRK09423 72 EIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY-----LGVPVVIVPTI 117 (366)
T ss_pred HHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH-----cCCCEEEeCCc
Confidence 46788999999999999999999999988877632 24679999998
No 112
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=51.89 E-value=28 Score=37.74 Aligned_cols=51 Identities=22% Similarity=0.387 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcC-------------CCeeEeeeccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRG-------------LKVAVAGIPKT 272 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g-------------~~i~VvgIPkT 272 (535)
..++.++.+++.+.|.+|-|||--+++.|..++-.....+ -.+++|.||-|
T Consensus 94 ~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTt 157 (395)
T PRK15454 94 DVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTT 157 (395)
T ss_pred HHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCC
Confidence 4678899999999999999999999999987654321111 13678888877
No 113
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=51.17 E-value=30 Score=36.92 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=40.6
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc-------------CCCeeEeeecccc
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR-------------GLKVAVAGIPKTI 273 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-------------g~~i~VvgIPkTI 273 (535)
+..+++++.+++.++|.+|-|||--.++.|..++-..... ...+++|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 70 AVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTA 135 (376)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence 3477899999999999999999999999988775432110 1246799999884
No 114
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=51.12 E-value=26 Score=37.20 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHH------------cCCCeeEeeecccc
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR------------RGLKVAVAGIPKTI 273 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~------------~g~~i~VvgIPkTI 273 (535)
+..+++++.+++.+.|.++-|||--+++.|..++-.... ..-.+++|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTta 134 (357)
T cd08181 70 ETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTA 134 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence 346789999999999999999999999998876532110 11246789999884
No 115
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=51.03 E-value=20 Score=38.24 Aligned_cols=65 Identities=20% Similarity=0.386 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHhCC---cEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHH
Q 009394 222 DTSKIVDSIQDRGI---NQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEE 292 (535)
Q Consensus 222 d~~ki~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~ 292 (535)
..+++++.+.+.+. |.++.|||--+++.|..++- .-.+|. +.+.||.|.- ...|-++|.-|++|.
T Consensus 61 ~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~-~~~rgi--~~i~iPTTll---a~vds~ig~k~~vn~ 128 (346)
T cd08196 61 AVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVAS-IYMRGV--SWSFVPTTLL---AQVDSCIGSKSSINV 128 (346)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHH-HHHcCC--CeEEecccHH---HhhhccccccceecC
Confidence 46789999999999 89999999988888776654 334564 6899999852 345667777776653
No 116
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=50.59 E-value=16 Score=40.79 Aligned_cols=134 Identities=19% Similarity=0.159 Sum_probs=79.9
Q ss_pred EEccCCCCCchhHHHHHHHHHHHHh------cCCeEEEEEccccccccCCCeeeCCHhHHhchhcc--cCcceeccCCC-
Q 009394 150 IVTCGGLCPGLNTVIREIVCGLYYM------YGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKR--GGTILGTSRGG- 220 (535)
Q Consensus 150 IvtsGG~apGmNavIr~vv~~l~~~------~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~--GGs~LGTsR~~- 220 (535)
++-..+..+ ..++..++...... .+...|+-..++..+. .+..+-++.+.|..++.. .-..+--.-+.
T Consensus 140 ~IDt~~~s~--~e~~~~iv~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~ii~d~~v~~ly~~~l~~~~~~~~~ge~ 216 (488)
T PRK13951 140 GIDTSKLNE--WETTALVVLEALDEKEISTIEKPHLVKIILGGFKRV-RNEELVFTTERVEKIYGRYLPENRLLFPDGEE 216 (488)
T ss_pred EEECCCCCH--HHHHHHHHHHhhhcceeeecCCceeEEEeccccccC-CCeEEEEECCcHHHHHHHhhcccEEEecCCCC
Confidence 444444444 45555555433211 1123444334444444 245556666666554322 00111001111
Q ss_pred ----CcHHHHHHHHHHhCC---cEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHH
Q 009394 221 ----HDTSKIVDSIQDRGI---NQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEE 292 (535)
Q Consensus 221 ----~d~~ki~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~ 292 (535)
+..+++++.|.++++ +.++.|||--....|.-++.. -.|| |+.|.||-|+- ..+|-|+|-=||+|.
T Consensus 217 ~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~agf~A~~-y~RG--i~~i~vPTTll---a~vDssiggK~~vn~ 289 (488)
T PRK13951 217 VKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVAST-FKRG--VGLSFYPTTLL---AQVDASVGGKNAIDF 289 (488)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHH-HhcC--CCeEecCccHH---HHHhcCCCCCeeeeC
Confidence 246889999999999 999999998887776655543 3467 56999999984 677889999888875
No 117
>PRK15138 aldehyde reductase; Provisional
Probab=50.40 E-value=25 Score=37.95 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=30.7
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHH
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFE 255 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~ 255 (535)
+..+++++.+++.+.|.+|-|||--+++.|..++-
T Consensus 72 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~ 106 (387)
T PRK15138 72 ETLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAA 106 (387)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHH
Confidence 35788999999999999999999999999887764
No 118
>PLN02834 3-dehydroquinate synthase
Probab=50.37 E-value=17 Score=39.97 Aligned_cols=60 Identities=23% Similarity=0.343 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHhCCc---EEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCch
Q 009394 222 DTSKIVDSIQDRGIN---QVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFD 287 (535)
Q Consensus 222 d~~ki~~~l~~~~Id---~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFd 287 (535)
..+++++.+.++++| .++-|||--.++.|..++-.. .+| +++|.||-|. +..+|.+.|--
T Consensus 148 ~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y-~rg--iplI~VPTTl---lA~vDss~ggK 210 (433)
T PLN02834 148 TLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASY-QRG--VNFVQIPTTV---MAQVDSSVGGK 210 (433)
T ss_pred HHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCcC---CeEEecCCCce
Confidence 467888899999998 999999998888877654322 345 6799999995 33344444433
No 119
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=50.17 E-value=30 Score=36.73 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHH-----------------cCCCeeEeeecccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR-----------------RGLKVAVAGIPKTI 273 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-----------------~g~~i~VvgIPkTI 273 (535)
..+++++.+++.++|.+|-|||--.++.|..++-.+.. ....+++|.||-|-
T Consensus 65 ~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 133 (367)
T cd08182 65 DLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTA 133 (367)
T ss_pred HHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCC
Confidence 46788999999999999999999999998877643211 01247899999883
No 120
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=49.85 E-value=2.4e+02 Score=27.02 Aligned_cols=120 Identities=16% Similarity=0.195 Sum_probs=63.7
Q ss_pred EEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHHHH
Q 009394 148 ACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSKIV 227 (535)
Q Consensus 148 iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ki~ 227 (535)
||++...-+-|-.+.++.++.+.+.. ++ ..+.-+. +..........+
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~~~~~ 48 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRA-HG-YQVLVCN-------------------------------SDNDPEKEKEYL 48 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHH-cC-CEEEEEc-------------------------------CCCCHHHHHHHH
Confidence 56666555677888888888877653 33 2222100 000011234667
Q ss_pred HHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC-cccCchhHHHHHHHHHHHHHhhhhc
Q 009394 228 DSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID-KSFGFDTAVEEAQRAISAAHVEAES 306 (535)
Q Consensus 228 ~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD-~S~GFdTAv~~~~~ai~~i~~~A~S 306 (535)
+.+...++|++++.+.+..-. .+ +.+.+.+ ++||.+ +.+++... .++|+|-- +....+.+.+... +
T Consensus 49 ~~l~~~~~dgiii~~~~~~~~---~l-~~~~~~~--ipvV~~----~~~~~~~~~~~v~~d~~-~~g~~~~~~l~~~--g 115 (267)
T cd06283 49 ESLLAYQVDGLIVNPTGNNKE---LY-QRLAKNG--KPVVLV----DRKIPELGVDTVTLDNY-EAAKEAVDHLIEK--G 115 (267)
T ss_pred HHHHHcCcCEEEEeCCCCChH---HH-HHHhcCC--CCEEEE----cCCCCCCCCCEEEeccH-HHHHHHHHHHHHc--C
Confidence 778889999999998765432 12 3444445 456654 44443322 35665531 2233333444322 3
Q ss_pred CcceEEEE
Q 009394 307 FENGIGVV 314 (535)
Q Consensus 307 ~~~rv~iV 314 (535)
+ ++|.++
T Consensus 116 ~-~~i~~l 122 (267)
T cd06283 116 Y-ERILFV 122 (267)
T ss_pred C-CcEEEE
Confidence 3 567666
No 121
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=49.76 E-value=33 Score=32.95 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=7.2
Q ss_pred CeeEeeeccc
Q 009394 263 KVAVAGIPKT 272 (535)
Q Consensus 263 ~i~VvgIPkT 272 (535)
.+||||+|--
T Consensus 80 ~lPViGVPv~ 89 (162)
T COG0041 80 PLPVIGVPVQ 89 (162)
T ss_pred CCCeEeccCc
Confidence 4778888853
No 122
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=48.87 E-value=52 Score=35.24 Aligned_cols=130 Identities=12% Similarity=0.075 Sum_probs=64.5
Q ss_pred cCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccc-cc--cccCCCeeeCCHhHHhchhcccCcceeccC-CCCcHHHHHH
Q 009394 153 CGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGG-YR--GFYARNTIPLTPKIVNGIHKRGGTILGTSR-GGHDTSKIVD 228 (535)
Q Consensus 153 sGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G-~~--GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR-~~~d~~ki~~ 228 (535)
+||...=+..+ ++.+.+.......+++|+-++ .+ |+- ...+++...+.++.. .|..-+ -..-+.++.+
T Consensus 12 aGgtsGhi~pa--al~~~l~~~~~~~~~~g~gg~~m~~~g~~--~~~~~~~l~v~G~~~----~l~~~~~~~~~~~~~~~ 83 (385)
T TIGR00215 12 AGEASGDILGA--GLRQQLKEHYPNARFIGVAGPRMAAEGCE--VLYSMEELSVMGLRE----VLGRLGRLLKIRKEVVQ 83 (385)
T ss_pred eCCccHHHHHH--HHHHHHHhcCCCcEEEEEccHHHHhCcCc--cccChHHhhhccHHH----HHHHHHHHHHHHHHHHH
Confidence 34433336666 666767654445677876532 11 111 123444444444321 121111 0123568888
Q ss_pred HHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHHHhh
Q 009394 229 SIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVE 303 (535)
Q Consensus 229 ~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~ 303 (535)
.+++.+.|.++.+||-+ +. ..++..++..|+++ ++.||-.+ |-..+ -+.+.....+|.+...
T Consensus 84 ~l~~~kPd~vi~~g~~~-~~--~~~a~aa~~~gip~-v~~i~P~~-waw~~--------~~~r~l~~~~d~v~~~ 145 (385)
T TIGR00215 84 LAKQAKPDLLVGIDAPD-FN--LTKELKKKDPGIKI-IYYISPQV-WAWRK--------WRAKKIEKATDFLLAI 145 (385)
T ss_pred HHHhcCCCEEEEeCCCC-cc--HHHHHHHhhCCCCE-EEEeCCcH-hhcCc--------chHHHHHHHHhHhhcc
Confidence 99999999999999844 32 12333444456553 33343332 21111 1255666666665543
No 123
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=48.70 E-value=28 Score=37.22 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHhCCc---EEEEecCCcchHHHHHHHHHHHHcCCCeeEeeecccc
Q 009394 222 DTSKIVDSIQDRGIN---QVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTI 273 (535)
Q Consensus 222 d~~ki~~~l~~~~Id---~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 273 (535)
..+++++.+.+.++| .++-|||--.++.|..++-.. .+| +++|.||-|.
T Consensus 69 ~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~-~rg--ip~I~IPTTl 120 (355)
T cd08197 69 TLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALL-FRG--IRLVHIPTTL 120 (355)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CCEEEecCcc
Confidence 467899999999998 999999988888877665321 235 6799999985
No 124
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=48.59 E-value=37 Score=36.58 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=41.1
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHH-------------cCCCeeEeeeccccc
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR-------------RGLKVAVAGIPKTID 274 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-------------~g~~i~VvgIPkTID 274 (535)
+..+++++.+++.+.|.++-|||--+++.|..++-.+.. ....+++|.||-|=-
T Consensus 75 ~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTag 141 (383)
T PRK09860 75 ENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAG 141 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCc
Confidence 347899999999999999999999999998887632111 012468899998843
No 125
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=48.45 E-value=3.3e+02 Score=30.29 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=94.5
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHH
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSK 225 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~k 225 (535)
-++||.-+ ||-==.||++..+.+... +.-+ .++.|...|+.. ||- |.=++.|+..
T Consensus 15 ~~~gI~sV---Csahp~VieAAl~~a~~~--~~pv--------------LiEAT~NQVnq~---GGY---TGmtP~dF~~ 69 (426)
T PRK15458 15 KTNGIYAV---CSAHPLVLEAAIRYALAN--DSPL--------------LIEATSNQVDQF---GGY---TGMTPADFRG 69 (426)
T ss_pred CCceEEEe---cCCCHHHHHHHHHHHhhc--CCcE--------------EEEecccccccc---CCc---CCCCHHHHHH
Confidence 35677775 555557899988766431 2222 367788777765 775 4445566544
Q ss_pred H-HHHHHHhCCcE-EEEecCC-------------cchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH
Q 009394 226 I-VDSIQDRGINQ-VYVLGGD-------------GTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV 290 (535)
Q Consensus 226 i-~~~l~~~~Id~-LvvIGGd-------------gS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv 290 (535)
. .+.-++.+++. .+++||| .+|..|..+.+...+.|+. -|+|=.|++ ..+....+.-++-+
T Consensus 70 ~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--cagdp~pL~d~~vA 145 (426)
T PRK15458 70 FVCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFK--KIHLDCSMS--CADDPIPLTDEIVA 145 (426)
T ss_pred HHHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--CCCCCCCCChHHHH
Confidence 4 44556778988 9999997 3466677777776777886 688888887 55655667779999
Q ss_pred HHHHHHHHHHHhhhh---cCcceEEEE
Q 009394 291 EEAQRAISAAHVEAE---SFENGIGVV 314 (535)
Q Consensus 291 ~~~~~ai~~i~~~A~---S~~~rv~iV 314 (535)
+.+++.|..+-.++. ....-+++|
T Consensus 146 ~Raa~L~~~aE~~a~~~~~~~~~vYvI 172 (426)
T PRK15458 146 ERAARLAKIAEETCREHFGESDLVYVI 172 (426)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 999988886655542 323347777
No 126
>PRK10586 putative oxidoreductase; Provisional
Probab=48.11 E-value=22 Score=38.07 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCch
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFD 287 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFd 287 (535)
+.+++.+..+ .+.|.+|-|||--+++.|..++.. ..+++|.||-|-.+|-+.+..+.-++
T Consensus 75 ~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~-----~~~p~i~vPT~a~t~s~~s~~avi~~ 134 (362)
T PRK10586 75 DVAQLAAASG-DDRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWTPLSVWYN 134 (362)
T ss_pred HHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh-----cCCCEEEEeCCccccccccCceEEEC
Confidence 3445555444 588999999999999999888753 35789999999998887776666554
No 127
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=47.93 E-value=28 Score=37.69 Aligned_cols=64 Identities=22% Similarity=0.380 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhCCc---EEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHH
Q 009394 223 TSKIVDSIQDRGIN---QVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEE 292 (535)
Q Consensus 223 ~~ki~~~l~~~~Id---~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~ 292 (535)
.+++.+.+.+++.+ .++.|||==..+.|..++-. ..+| +++|.||-| =+..+|.++|--|++|.
T Consensus 85 v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~-~~rG--ip~I~IPTT---lla~vDs~~g~k~~vn~ 151 (369)
T cd08198 85 VEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAAT-AHRG--VRLIRIPTT---VLAQNDSGVGVKNGINA 151 (369)
T ss_pred HHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHH-hcCC--CCEEEECCC---chhhhCCCeeeeecccC
Confidence 56888999999998 99999998888877766543 3456 679999999 23556666766666654
No 128
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=47.90 E-value=1.1e+02 Score=35.20 Aligned_cols=94 Identities=22% Similarity=0.255 Sum_probs=64.6
Q ss_pred HHHHHHHH--hCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHHHh
Q 009394 225 KIVDSIQD--RGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHV 302 (535)
Q Consensus 225 ki~~~l~~--~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~ 302 (535)
+++..+.. +-||+++|-+|--++.-|..|-+++-.-|++ -|+-=|.||| + |+..-.
T Consensus 112 rLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~-yv~fKPGtIe--------------q-------I~svi~ 169 (717)
T COG4981 112 RLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFP-YVAFKPGTIE--------------Q-------IRSVIR 169 (717)
T ss_pred HHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCce-eEEecCCcHH--------------H-------HHHHHH
Confidence 44544444 4699999999999999999999998877875 3666788875 2 222222
Q ss_pred hhhcCcceEEEEEecCCCcc-H----------HHHHHhHhcCCccEEecC
Q 009394 303 EAESFENGIGVVKLMGRYSG-F----------IAMYATIASRDVDCCLIP 341 (535)
Q Consensus 303 ~A~S~~~rv~iVEvMGR~sG-~----------LAl~aaLAs~~ad~ilIP 341 (535)
-|..++.-=.|+..-|+++| | |++|+.|.+ ..|++++-
T Consensus 170 IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~-~~NIvl~v 218 (717)
T COG4981 170 IAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRS-RDNIVLCV 218 (717)
T ss_pred HHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhc-CCCEEEEe
Confidence 23334443345666565554 2 899999998 68887763
No 129
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=47.77 E-value=2.2e+02 Score=29.57 Aligned_cols=92 Identities=14% Similarity=0.191 Sum_probs=58.3
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccC-CCCc
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSR-GGHD 222 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR-~~~d 222 (535)
+..+||++..+-..|--+.+++++.+.+.. ++ ..++- .++. ....
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~-~g-~~l~i--------------------------------~~~~~~~~~ 69 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAES-LG-AKVFV--------------------------------QSANGNEET 69 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHH-cC-CEEEE--------------------------------ECCCCCHHH
Confidence 467999999888889999999999887753 22 23321 1111 1122
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeecccc
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTI 273 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 273 (535)
..+.++.|..+++|++++.+.+.... ....+.+.+.+ ++||.+-..+
T Consensus 70 ~~~~i~~l~~~~vDGiIi~~~~~~~~--~~~l~~~~~~~--iPvV~id~~~ 116 (330)
T PRK10355 70 QMSQIENMINRGVDVLVIIPYNGQVL--SNVIKEAKQEG--IKVLAYDRMI 116 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhH--HHHHHHHHHCC--CeEEEECCCC
Confidence 45678888999999999997653311 12234444555 5677764444
No 130
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=47.55 E-value=1.2e+02 Score=29.70 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=25.2
Q ss_pred HHHHHH-HHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEe
Q 009394 223 TSKIVD-SIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVA 267 (535)
Q Consensus 223 ~~ki~~-~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~Vv 267 (535)
.++.++ .+..+++|++++.+.+-... ..+.+.+.++++-++
T Consensus 43 ~~~~~~~~l~~~~vdgvi~~~~~~~~~----~~~~l~~~~iPvv~~ 84 (269)
T cd06297 43 LKRYLESTTLAYLTDGLLLASYDLTER----LAERRLPTERPVVLV 84 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEecCccChH----HHHHHhhcCCCEEEE
Confidence 345554 58889999999998764422 334455556554333
No 131
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=47.44 E-value=63 Score=30.77 Aligned_cols=88 Identities=23% Similarity=0.342 Sum_probs=54.1
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcH
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDT 223 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~ 223 (535)
+..||.++ || .|+ ++..++..+...|++.++.|.++||-+..+. .+.++.|...+-.++=.+=+....
T Consensus 45 ~~~~v~ll--G~-~~~---~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~------~~i~~~I~~~~pdiv~vglG~PkQ 112 (171)
T cd06533 45 KGLRVFLL--GA-KPE---VLEKAAERLRARYPGLKIVGYHHGYFGPEEE------EEIIERINASGADILFVGLGAPKQ 112 (171)
T ss_pred cCCeEEEE--CC-CHH---HHHHHHHHHHHHCCCcEEEEecCCCCChhhH------HHHHHHHHHcCCCEEEEECCCCHH
Confidence 35677777 43 444 4444455566679999999999999874321 124566666655554444444445
Q ss_pred HHHHHHHHHh-CCcEEEEecC
Q 009394 224 SKIVDSIQDR-GINQVYVLGG 243 (535)
Q Consensus 224 ~ki~~~l~~~-~Id~LvvIGG 243 (535)
|+.+..+++. +-..++.+||
T Consensus 113 E~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 113 ELWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred HHHHHHHHHHCCCCEEEEece
Confidence 5555444444 5677788888
No 132
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=47.12 E-value=1.5e+02 Score=30.78 Aligned_cols=99 Identities=10% Similarity=0.145 Sum_probs=51.9
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcH
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDT 223 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~ 223 (535)
-..||||||| -..+|+.++++.+-+ .++..+++-+.-=+ +|=.. ..++
T Consensus 13 ~p~~I~vITs-~~gAa~~D~~~~~~~----r~~~~~~~~~p~~v---------------------QG~~A------~~~I 60 (319)
T PF02601_consen 13 FPKRIAVITS-PTGAAIQDFLRTLKR----RNPIVEIILYPASV---------------------QGEGA------AASI 60 (319)
T ss_pred CCCEEEEEeC-CchHHHHHHHHHHHH----hCCCcEEEEEeccc---------------------cccch------HHHH
Confidence 3469999998 455666666666544 34544554332111 11000 1122
Q ss_pred HHHHHHHHHh----CCcEEEEecCCcchHHHHHHHHHHHH---cCCCeeEe-eeccccc
Q 009394 224 SKIVDSIQDR----GINQVYVLGGDGTQKGASAIFEEIRR---RGLKVAVA-GIPKTID 274 (535)
Q Consensus 224 ~ki~~~l~~~----~Id~LvvIGGdgS~~~A~~L~~~~~~---~g~~i~Vv-gIPkTID 274 (535)
-+.++.+.+. .+|.++++=|-||...-..+.++.-. ...++||| ||=-.+|
T Consensus 61 ~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGHe~D 119 (319)
T PF02601_consen 61 VSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGHETD 119 (319)
T ss_pred HHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCCCCC
Confidence 2334444443 39999999999998764443332111 13445554 4544444
No 133
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=46.89 E-value=2.9e+02 Score=26.98 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEe
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVA 267 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~Vv 267 (535)
.+.++.+.+ ++|+++++..+.+. .....+++.+.++ +||
T Consensus 49 ~~~i~~~~~-~vdgiii~~~~~~~--~~~~i~~~~~~~i--pvV 87 (275)
T cd06307 49 AAALLRLGA-RSDGVALVAPDHPQ--VRAAVARLAAAGV--PVV 87 (275)
T ss_pred HHHHHHHHh-cCCEEEEeCCCcHH--HHHHHHHHHHCCC--cEE
Confidence 466677778 99999999876432 1223355555564 455
No 134
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=46.48 E-value=59 Score=29.19 Aligned_cols=89 Identities=15% Similarity=0.183 Sum_probs=53.7
Q ss_pred eEEEEEccccccccCC--CeeeCCHhHHhchhcccCcceeccC---C-CC-cHHHHHHHHHHhCCcEEEEecC-CcchHH
Q 009394 178 HKVLGIEGGYRGFYAR--NTIPLTPKIVNGIHKRGGTILGTSR---G-GH-DTSKIVDSIQDRGINQVYVLGG-DGTQKG 249 (535)
Q Consensus 178 ~~V~Gi~~G~~GL~~~--~~~~L~~~~V~~i~~~GGs~LGTsR---~-~~-d~~ki~~~l~~~~Id~LvvIGG-dgS~~~ 249 (535)
.++++ |-.||-+. .+..+...++..|...|--+|-|.- . .+ ...+.++.|.+.++-+|.+--| +-. .-
T Consensus 12 ~~lva---G~~gL~r~V~~v~v~e~~d~~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~-~i 87 (123)
T PF07905_consen 12 AKLVA---GENGLDRPVRWVHVMEAPDPSDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLD-EI 87 (123)
T ss_pred CEEec---CCccCCCcEEEEEEeecCCHHHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccc-cC
Confidence 45655 55565331 2223344467778544444454432 2 22 3788999999999999999555 333 33
Q ss_pred HHHHHHHHHHcCCCeeEeeeccc
Q 009394 250 ASAIFEEIRRRGLKVAVAGIPKT 272 (535)
Q Consensus 250 A~~L~~~~~~~g~~i~VvgIPkT 272 (535)
-..+.+++.+++ +|++.+|..
T Consensus 88 P~~~i~~A~~~~--lPli~ip~~ 108 (123)
T PF07905_consen 88 PEEIIELADELG--LPLIEIPWE 108 (123)
T ss_pred CHHHHHHHHHcC--CCEEEeCCC
Confidence 355667777666 568999973
No 135
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=46.41 E-value=2e+02 Score=28.95 Aligned_cols=86 Identities=14% Similarity=0.214 Sum_probs=49.2
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CCcHHH
Q 009394 147 HACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GHDTSK 225 (535)
Q Consensus 147 ~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~~k 225 (535)
+||++...=.-|-...+++++-+.+.. ++ .++.- ++.+.. .....+
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~-~g-~~v~~-------------------------------~~~~~~d~~~~~~ 47 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKE-LG-VDAIY-------------------------------VGPTTADAAGQVQ 47 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHH-hC-CeEEE-------------------------------ECCCCCCHHHHHH
Confidence 477777555567778888888777653 33 23221 111111 123456
Q ss_pred HHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 226 IVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 226 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
.++.+...++|++++.+.+.+ ....+.+.+++.++ +||.+
T Consensus 48 ~i~~~~~~~~DgiIi~~~~~~--~~~~~~~~~~~~~i--PvV~v 87 (298)
T cd06302 48 IIEDLIAQGVDAIAVVPNDPD--ALEPVLKKAREAGI--KVVTH 87 (298)
T ss_pred HHHHHHhcCCCEEEEecCCHH--HHHHHHHHHHHCCC--eEEEE
Confidence 677777889999999875532 22233345555564 45544
No 136
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=45.87 E-value=41 Score=36.10 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHH---------------cCCCeeEeeeccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR---------------RGLKVAVAGIPKT 272 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~---------------~g~~i~VvgIPkT 272 (535)
..+++++.+++.++|.+|-|||--+++.|..++-.... ..-.+++|.||-|
T Consensus 75 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTT 140 (382)
T PRK10624 75 VVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTT 140 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCC
Confidence 46788899999999999999999999998765422111 0123689999988
No 137
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=45.67 E-value=2.9e+02 Score=26.69 Aligned_cols=41 Identities=15% Similarity=0.338 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
..++++.|..+++|++++.+.+..-. . .+.+.+.+ ++||.+
T Consensus 44 ~~~~i~~l~~~~vdgiii~~~~~~~~---~-~~~~~~~~--ipvV~~ 84 (264)
T cd06274 44 ERETVETLIARQVDALIVAGSLPPDD---P-YYLCQKAG--LPVVAL 84 (264)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCchH---H-HHHHHhcC--CCEEEe
Confidence 45788889999999999998764322 1 23344455 456655
No 138
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=45.67 E-value=2.8e+02 Score=26.62 Aligned_cols=121 Identities=13% Similarity=0.151 Sum_probs=66.8
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHHH
Q 009394 147 HACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSKI 226 (535)
Q Consensus 147 ~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ki 226 (535)
.||++...-..|-.+..+.++.+.+.+ ++ ..++-+. +.........+
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~~ 47 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASA-AG-YSTIIGN-------------------------------SDENPETENRY 47 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHH-cC-CEEEEEe-------------------------------CCCCHHHHHHH
Confidence 377787666678888888888877653 33 2333110 11111224467
Q ss_pred HHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCC-CcccCchhHHHHHHHHHHHHHhhhh
Q 009394 227 VDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPII-DKSFGFDTAVEEAQRAISAAHVEAE 305 (535)
Q Consensus 227 ~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gt-D~S~GFdTAv~~~~~ai~~i~~~A~ 305 (535)
++.+...++|++++.+.+.... ..+++++.++ ++|. +|++.+.. -.+++.|-. .....+++.+.. .
T Consensus 48 ~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~i--pvV~----~~~~~~~~~~~~v~~d~~-~~~~~~~~~l~~--~ 114 (265)
T cd06299 48 LDNLLSQRVDGIIVVPHEQSAE----QLEDLLKRGI--PVVF----VDREITGSPIPFVTSDPQ-PGMTEAVSLLVA--L 114 (265)
T ss_pred HHHHHhcCCCEEEEcCCCCChH----HHHHHHhCCC--CEEE----EecccCCCCCCEEEECcH-HHHHHHHHHHHH--c
Confidence 8889999999999998765532 2355555664 4553 44544321 134555532 122333444432 2
Q ss_pred cCcceEEEE
Q 009394 306 SFENGIGVV 314 (535)
Q Consensus 306 S~~~rv~iV 314 (535)
++ ++|.++
T Consensus 115 g~-~~I~~i 122 (265)
T cd06299 115 GH-KKIGYI 122 (265)
T ss_pred CC-CcEEEE
Confidence 43 456666
No 139
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=45.67 E-value=38 Score=36.25 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=40.2
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHH------------------cCCCeeEeeecccc
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR------------------RGLKVAVAGIPKTI 273 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~------------------~g~~i~VvgIPkTI 273 (535)
+..+++++.+++.++|.++-|||--.++.|..++-.... ..-.+++|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta 140 (380)
T cd08185 70 TTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTA 140 (380)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCC
Confidence 346788899999999999999999999998877543210 01247799999884
No 140
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=45.67 E-value=3.6e+02 Score=27.80 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=53.4
Q ss_pred CCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCC-
Q 009394 143 SDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGH- 221 (535)
Q Consensus 143 ~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~- 221 (535)
.+..+||++...-.-|..+.++.++.+.+.. +++..++ +.++....
T Consensus 22 ~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~-~g~~~~~--------------------------------~~~~~~~~~ 68 (330)
T PRK15395 22 AADTRIGVTIYKYDDNFMSVVRKAIEKDAKA-APDVQLL--------------------------------MNDSQNDQS 68 (330)
T ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHHh-cCCeEEE--------------------------------EecCCCCHH
Confidence 4556888888655677888888888777653 2221221 11122111
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
...+.++.|..+++|++++.+.+..... ...+++++.+++ ||.+
T Consensus 69 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~--~~l~~l~~~giP--vV~v 112 (330)
T PRK15395 69 KQNDQIDVLLAKGVKALAINLVDPAAAP--TVIEKARGQDVP--VVFF 112 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCHHHHH--HHHHHHHHCCCc--EEEE
Confidence 2235677889999999999987754322 223445555654 5554
No 141
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=45.35 E-value=2.9e+02 Score=26.58 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC-cccCch--hHHHHHHHHHHH
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID-KSFGFD--TAVEEAQRAISA 299 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD-~S~GFd--TAv~~~~~ai~~ 299 (535)
..++++.+...++|++++++.+.+-. +.+++.+.+ +++|.+ |++.+... .++++| .+.+.+++.+..
T Consensus 44 ~~~~i~~l~~~~vdgiii~~~~~~~~----~~~~l~~~~--ipvV~~----~~~~~~~~~~~v~~d~~~~~~~~~~~l~~ 113 (268)
T cd06298 44 ELKVLNNLLAKQVDGIIFMGGKISEE----HREEFKRSP--TPVVLA----GSVDEDNELPSVNIDYKKAAFEATELLIK 113 (268)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCcHH----HHHHHhcCC--CCEEEE----ccccCCCCCCEEEECcHHHHHHHHHHHHH
Confidence 34677778889999999998654432 334444445 456655 33332222 234444 455555444432
Q ss_pred HHhhhhcCcceEEEEE
Q 009394 300 AHVEAESFENGIGVVK 315 (535)
Q Consensus 300 i~~~A~S~~~rv~iVE 315 (535)
.++ ++|.++-
T Consensus 114 -----~g~-~~i~~l~ 123 (268)
T cd06298 114 -----NGH-KKIAFIS 123 (268)
T ss_pred -----cCC-ceEEEEe
Confidence 243 5677774
No 142
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=45.28 E-value=45 Score=35.68 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=40.2
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHH-------------cCCCeeEeeecccc
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR-------------RGLKVAVAGIPKTI 273 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-------------~g~~i~VvgIPkTI 273 (535)
+..+++++.+++.+.|.++-|||--.++.|..++-.... ....+++|.||-|-
T Consensus 72 ~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTta 137 (377)
T cd08176 72 TNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTA 137 (377)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCC
Confidence 346788999999999999999999999998877532111 11347889999874
No 143
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=44.93 E-value=3.5e+02 Score=27.43 Aligned_cols=121 Identities=16% Similarity=0.148 Sum_probs=62.3
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHH
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSK 225 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~k 225 (535)
..||++...-.-|-...++.++-+.+.. ++ .+++-.. +.........
T Consensus 64 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~ 110 (331)
T PRK14987 64 RAIGVLLPSLTNQVFAEVLRGIESVTDA-HG-YQTMLAH-------------------------------YGYKPEMEQE 110 (331)
T ss_pred CEEEEEeCCCcchhHHHHHHHHHHHHHH-CC-CEEEEec-------------------------------CCCCHHHHHH
Confidence 4788888655567777788887776643 22 2322110 0000111235
Q ss_pred HHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchh--HHHHHHHHHHHHHhh
Q 009394 226 IVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDT--AVEEAQRAISAAHVE 303 (535)
Q Consensus 226 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdT--Av~~~~~ai~~i~~~ 303 (535)
.++.+...++|++++.+-+.+- ...+.+.+.+ +|+|.+- |.+.+..+.++++|- +...+++ .+..
T Consensus 111 ~~~~~~~~~vdgiI~~~~~~~~----~~~~~l~~~~--iPvV~~~---~~~~~~~~~~V~~Dn~~~~~~a~~---~L~~- 177 (331)
T PRK14987 111 RLESMLSWNIDGLILTERTHTP----RTLKMIEVAG--IPVVELM---DSQSPCLDIAVGFDNFEAARQMTT---AIIA- 177 (331)
T ss_pred HHHHHHhcCCCEEEEcCCCCCH----HHHHHHHhCC--CCEEEEe---cCCCCCCCceEEeCcHHHHHHHHH---HHHH-
Confidence 6677888999999998744332 2234444445 5566541 222222223455542 3333333 3332
Q ss_pred hhcCcceEEEE
Q 009394 304 AESFENGIGVV 314 (535)
Q Consensus 304 A~S~~~rv~iV 314 (535)
.+| ++|.++
T Consensus 178 -~Gh-~~I~~i 186 (331)
T PRK14987 178 -RGH-RHIAYL 186 (331)
T ss_pred -CCC-ceEEEE
Confidence 344 578887
No 144
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=44.23 E-value=41 Score=35.49 Aligned_cols=47 Identities=11% Similarity=0.263 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeecccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTI 273 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 273 (535)
..+++++..++.+.|.++-|||--.++.|..++-. +.+++|.||-|-
T Consensus 66 ~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~-----~~~p~i~VPTt~ 112 (345)
T cd08171 66 NVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADK-----LGKPVFTFPTIA 112 (345)
T ss_pred HHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHH-----cCCCEEEecCcc
Confidence 46678888899999999999999999998887653 246799999984
No 145
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=44.04 E-value=36 Score=30.81 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=33.1
Q ss_pred HHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeec
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIP 270 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 270 (535)
.+++...++++|.++++.||+-+..+. +.++++|.++.+++.+
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~Df~~~i---~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDSDFVPLV---ERLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCccHHHHH---HHHHHcCCEEEEEccC
Confidence 345566667999999999999986644 5556679888888777
No 146
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=43.64 E-value=4.3e+02 Score=29.36 Aligned_cols=140 Identities=19% Similarity=0.186 Sum_probs=91.9
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHH
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSK 225 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~k 225 (535)
-++||.-+ ||-==.||++..+.+... +.-+ .++.|...|+.. ||- |.=++.|+..
T Consensus 11 ~~~gI~sV---Csahp~VieAAl~~a~~~--~~pv--------------LiEAT~NQVnq~---GGY---TGmtP~dF~~ 65 (420)
T TIGR02810 11 EPRGIYSV---CSAHPLVLEAAIRRARAS--GTPV--------------LIEATSNQVNQF---GGY---TGMTPADFRD 65 (420)
T ss_pred CCCeEEEE---CCCCHHHHHHHHHHHhhc--CCcE--------------EEEecccccccc---CCc---CCCCHHHHHH
Confidence 35677765 555557999988766432 2222 367788777765 775 4445556544
Q ss_pred -HHHHHHHhCCcE-EEEecCCc-------------chHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH
Q 009394 226 -IVDSIQDRGINQ-VYVLGGDG-------------TQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV 290 (535)
Q Consensus 226 -i~~~l~~~~Id~-LvvIGGdg-------------S~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv 290 (535)
+.+.-++.+++. .+++|||- +|..|..+.+...+.|+. -|+|=.|++ ..+-..-+.-++-+
T Consensus 66 ~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca~d~~~L~d~~vA 141 (420)
T TIGR02810 66 FVETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGFT--KIHLDASMG--CAGDPAPLDDATVA 141 (420)
T ss_pred HHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--ccCCCccCCHHHHH
Confidence 444566779998 99999982 466666666666667886 688888887 22233556778889
Q ss_pred HHHHHHHHHHHhhhh---cCcceEEEE
Q 009394 291 EEAQRAISAAHVEAE---SFENGIGVV 314 (535)
Q Consensus 291 ~~~~~ai~~i~~~A~---S~~~rv~iV 314 (535)
+.+++.|..+-.++. ....-+++|
T Consensus 142 eRaa~L~~~aE~~~~~~~~~~~~vYvI 168 (420)
T TIGR02810 142 ERAARLCAVAEAAATDRRGETKPVYVI 168 (420)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 999988886655544 333346777
No 147
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=43.63 E-value=42 Score=35.82 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHH----------Hc-------CCCeeEeeeccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIR----------RR-------GLKVAVAGIPKT 272 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~----------~~-------g~~i~VvgIPkT 272 (535)
..+++++.+++.+.|.++-|||--.++.|..++-.+. .. +-.+++|.||-|
T Consensus 63 ~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 130 (374)
T cd08183 63 LVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTT 130 (374)
T ss_pred HHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCC
Confidence 4678889999999999999999999999887654321 00 124678999987
No 148
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=43.33 E-value=53 Score=35.06 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHh---CCcEEEEecCCcchHHHHHHHHHHHHc-------------CCCeeEeeecccccc
Q 009394 222 DTSKIVDSIQDR---GINQVYVLGGDGTQKGASAIFEEIRRR-------------GLKVAVAGIPKTIDN 275 (535)
Q Consensus 222 d~~ki~~~l~~~---~Id~LvvIGGdgS~~~A~~L~~~~~~~-------------g~~i~VvgIPkTIDN 275 (535)
..+++++.+++. ++|.++-|||--+++.|..++-.+... .-.+++|.||-|--.
T Consensus 66 ~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGT 135 (347)
T cd08184 66 QIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGT 135 (347)
T ss_pred HHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCcc
Confidence 467888888888 999999999999999998876433211 113568999988443
No 149
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=43.14 E-value=35 Score=26.89 Aligned_cols=50 Identities=12% Similarity=0.324 Sum_probs=36.2
Q ss_pred eeccCCCCcHHHHHHHHHHhCCcE------------EEEecCCcchHHHHHHHHHHH-HcCCC
Q 009394 214 LGTSRGGHDTSKIVDSIQDRGINQ------------VYVLGGDGTQKGASAIFEEIR-RRGLK 263 (535)
Q Consensus 214 LGTsR~~~d~~ki~~~l~~~~Id~------------LvvIGGdgS~~~A~~L~~~~~-~~g~~ 263 (535)
+|+-+..++.++.++.|++.+++. -|.+|.+.+...|..+.+.++ ..+.+
T Consensus 9 v~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~ 71 (76)
T PF05036_consen 9 VGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPD 71 (76)
T ss_dssp EEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS-
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCC
Confidence 566666667788899999998884 678899999999988888887 55654
No 150
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=43.02 E-value=47 Score=36.15 Aligned_cols=51 Identities=22% Similarity=0.278 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHH-------------cCCCeeEeeeccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR-------------RGLKVAVAGIPKT 272 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-------------~g~~i~VvgIPkT 272 (535)
..++.++.+++.+.|.+|-+||--+++.|..++-.... ..-+.++|.||-|
T Consensus 74 ~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTT 137 (377)
T COG1454 74 TVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTT 137 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCC
Confidence 46788999999999999999999999988876533321 1122678888887
No 151
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=42.80 E-value=29 Score=30.95 Aligned_cols=47 Identities=19% Similarity=0.369 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTID 274 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID 274 (535)
.+.+.+.+..++.++++-||+-+..+ .+.++++|.++-+++.+...+
T Consensus 86 d~~~~~~~~~~d~ivLvSgD~Df~~~---v~~l~~~g~~V~v~~~~~~~s 132 (146)
T PF01936_consen 86 DILELAYENPPDTIVLVSGDSDFAPL---VRKLRERGKRVIVVGAEDSAS 132 (146)
T ss_dssp HHHHHG--GG-SEEEEE---GGGHHH---HHHHHHH--EEEEEE-GGGS-
T ss_pred HHHHHhhccCCCEEEEEECcHHHHHH---HHHHHHcCCEEEEEEeCCCCC
Confidence 34444545567999999999998654 455667898888888644443
No 152
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=42.78 E-value=3.9e+02 Score=27.35 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=41.2
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CCcHH
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GHDTS 224 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~~ 224 (535)
..||++...-.-|-...++.++-..+.. ++ ..++- ..+.. .+...
T Consensus 60 ~~Igvi~~~~~~~f~~~l~~gi~~~~~~-~g-y~~~~--------------------------------~~~~~~~~~~~ 105 (346)
T PRK10401 60 DTIGVVVMDVSDAFFGALVKAVDLVAQQ-HQ-KYVLI--------------------------------GNSYHEAEKER 105 (346)
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EcCCCChHHHH
Confidence 4799998766677888888888776643 22 22221 01111 12234
Q ss_pred HHHHHHHHhCCcEEEEecCC
Q 009394 225 KIVDSIQDRGINQVYVLGGD 244 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGd 244 (535)
+.++.|...++|++++.+..
T Consensus 106 ~~i~~l~~~~vdGiIi~~~~ 125 (346)
T PRK10401 106 HAIEVLIRQRCNALIVHSKA 125 (346)
T ss_pred HHHHHHHhcCCCEEEEeCCC
Confidence 56777888999999999754
No 153
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.67 E-value=3.2e+02 Score=26.42 Aligned_cols=87 Identities=22% Similarity=0.311 Sum_probs=49.8
Q ss_pred EEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHHHH
Q 009394 148 ACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSKIV 227 (535)
Q Consensus 148 iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ki~ 227 (535)
|||+...-..|-.+.+++++-..+.+ ++ .+++-+ -+....+...+.+
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~~~i 48 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQ-YG-YTVLLC-------------------------------NTYRGGVSEADYV 48 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCChHHHHHHH
Confidence 67777666677778888888776643 22 222210 0111123345788
Q ss_pred HHHHHhCCcEEEEecCCcch-HHHHHHHHHHHHcCCCeeEeee
Q 009394 228 DSIQDRGINQVYVLGGDGTQ-KGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 228 ~~l~~~~Id~LvvIGGdgS~-~~A~~L~~~~~~~g~~i~VvgI 269 (535)
+.|...++|++++.+..-.. .......+.+.+++ ++||.+
T Consensus 49 ~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~--ipvV~i 89 (273)
T cd06292 49 EDLLARGVRGVVFISSLHADTHADHSHYERLAERG--LPVVLV 89 (273)
T ss_pred HHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCC--CCEEEE
Confidence 99999999999999854222 11112223444555 456654
No 154
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=42.08 E-value=53 Score=34.94 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=41.2
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc-----------------CCCeeEeeeccccccC
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR-----------------GLKVAVAGIPKTIDND 276 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-----------------g~~i~VvgIPkTIDND 276 (535)
..+++++.+++.+.|.+|-|||--.++.|..++-.+... .-.+++|.||-|--.+
T Consensus 69 ~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtg 140 (370)
T cd08192 69 AVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGTG 140 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCchh
Confidence 467888999999999999999999999888775433210 1136889999885443
No 155
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=42.05 E-value=1.1e+02 Score=31.22 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=60.9
Q ss_pred CCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC---CCcHHHHHHHHHHh
Q 009394 157 CPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG---GHDTSKIVDSIQDR 233 (535)
Q Consensus 157 apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~---~~d~~ki~~~l~~~ 233 (535)
+|....-.+.+++.+.+..+..++.-+...+. +.. .+.......+...|+.+.+..+. ..|+...+..|+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~--~g~---~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~ 189 (340)
T cd06349 115 STSQAIEAPLLADYAVKDLGFKKVAILSVNTD--WGR---TSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDA 189 (340)
T ss_pred cCCcHHHHHHHHHHHHHHcCCcEEEEEecCCh--HhH---HHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhc
Confidence 34444445556665433344456655543332 111 11111223344567777776553 45788899999999
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEee
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAG 268 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~Vvg 268 (535)
+-|.+++.|..+ .+..+.+.+++.|++.++++
T Consensus 190 ~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 221 (340)
T cd06349 190 NPDAIILISYYN---DGAPIARQARAVGLDIPVVA 221 (340)
T ss_pred CCCEEEEccccc---hHHHHHHHHHHcCCCCcEEc
Confidence 999988877543 23456677778888877664
No 156
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=41.40 E-value=3.3e+02 Score=26.11 Aligned_cols=83 Identities=16% Similarity=0.132 Sum_probs=50.4
Q ss_pred EEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHHHH
Q 009394 148 ACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSKIV 227 (535)
Q Consensus 148 iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ki~ 227 (535)
||++..+-.-|.....++++-+.+.. ++ .+++-+. +.....+..+++
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~~~ 48 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEA-AG-YQLLLGN-------------------------------TGYSPEREEELL 48 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHH-cC-CEEEEec-------------------------------CCCCchhHHHHH
Confidence 67777776778888888888776643 33 2322111 001112345778
Q ss_pred HHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 228 DSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 228 ~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
+.+...++|++++.+-+.+. . ..+.+.+.+ ++||.+
T Consensus 49 ~~l~~~~vdgiii~~~~~~~-~---~~~~~~~~~--ipvv~~ 84 (268)
T cd01575 49 RTLLSRRPAGLILTGLEHTE-R---TRQLLRAAG--IPVVEI 84 (268)
T ss_pred HHHHHcCCCEEEEeCCCCCH-H---HHHHHHhcC--CCEEEE
Confidence 88889999999999877552 1 223333445 557766
No 157
>PRK05670 anthranilate synthase component II; Provisional
Probab=41.26 E-value=43 Score=32.14 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=29.0
Q ss_pred HHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH
Q 009394 230 IQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV 290 (535)
Q Consensus 230 l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv 290 (535)
++.++.|+||+-||.|+...+....+.+++..-++||.|| |+|+.--.
T Consensus 39 ~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGI-------------ClG~Qlla 86 (189)
T PRK05670 39 IEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGV-------------CLGHQAIG 86 (189)
T ss_pred HHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE-------------CHHHHHHH
Confidence 3556789999999999975543332222221123455555 88887544
No 158
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=41.04 E-value=83 Score=32.21 Aligned_cols=69 Identities=19% Similarity=0.310 Sum_probs=50.5
Q ss_pred eCCHhHHhchhcccCcceeccCC-CCcHHHHHHHHHHhCCcEEEEe----cCCcchHHHHHHHHHHHHcCCCeeEe
Q 009394 197 PLTPKIVNGIHKRGGTILGTSRG-GHDTSKIVDSIQDRGINQVYVL----GGDGTQKGASAIFEEIRRRGLKVAVA 267 (535)
Q Consensus 197 ~L~~~~V~~i~~~GGs~LGTsR~-~~d~~ki~~~l~~~~Id~LvvI----GGdgS~~~A~~L~~~~~~~g~~i~Vv 267 (535)
+++++.+-......|.+..||-- ..++.++.+.+.+.+-+.+++| |=.||+..|...++.+ .+.++.|+
T Consensus 41 ~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~Vi 114 (280)
T PF02645_consen 41 DISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHVI 114 (280)
T ss_dssp TSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEEE
T ss_pred CCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEEE
Confidence 78999888877677877777764 4578888888888999988887 5678888888877765 34455554
No 159
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=40.77 E-value=1.5e+02 Score=30.44 Aligned_cols=49 Identities=14% Similarity=0.296 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKT 272 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkT 272 (535)
..++.++.+++.|+|++++. |=.+..+..+.+.++++|++.-...-|.|
T Consensus 105 G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 47899999999999999995 66778888888899999988655555655
No 160
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=40.60 E-value=47 Score=35.61 Aligned_cols=56 Identities=11% Similarity=0.157 Sum_probs=41.1
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc-------------CCCeeEeeeccccccC
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR-------------GLKVAVAGIPKTIDND 276 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-------------g~~i~VvgIPkTIDND 276 (535)
+..+++++.+++.+.|.++-|||--.++.|..++-..... ...+++|.||-|--.+
T Consensus 73 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTG 141 (382)
T cd08187 73 ETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATG 141 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchh
Confidence 3467888999999999999999999999887764321110 1246899999875433
No 161
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=40.39 E-value=55 Score=35.61 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=29.8
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHH
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIF 254 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~ 254 (535)
+..+++++.+++.++|.+|-|||--.++.|..++
T Consensus 67 ~~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia 100 (414)
T cd08190 67 ESFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAAN 100 (414)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 3467889999999999999999999999987765
No 162
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=39.97 E-value=61 Score=33.91 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=42.0
Q ss_pred CcHHHHHHHHHHh-CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccC
Q 009394 221 HDTSKIVDSIQDR-GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPI 279 (535)
Q Consensus 221 ~d~~ki~~~l~~~-~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~g 279 (535)
...+++.+.+++. +.|.+|-|||--.++.|..++. .++ +++|.||-|..+|-..
T Consensus 61 ~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~---~~~--~p~i~vPTt~~tgs~~ 115 (331)
T cd08174 61 SDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAF---LRG--IPLSVPTTNLNDDGIA 115 (331)
T ss_pred cCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHh---hcC--CCEEEecCccccCccc
Confidence 4567777777777 5999999999999998887765 234 6799999998775443
No 163
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=39.83 E-value=4.1e+02 Score=26.76 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
....++.+..+++|++++.+.+... .....+++++.|+ +||.+
T Consensus 46 q~~~i~~l~~~~vdgiii~~~~~~~--~~~~~~~~~~~gi--PvV~~ 88 (303)
T cd01539 46 QNEQIDTALAKGVDLLAVNLVDPTA--AQTVINKAKQKNI--PVIFF 88 (303)
T ss_pred HHHHHHHHHHcCCCEEEEecCchhh--HHHHHHHHHHCCC--CEEEe
Confidence 4467888899999999998876432 1233345555564 46643
No 164
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=39.71 E-value=49 Score=35.95 Aligned_cols=63 Identities=22% Similarity=0.369 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCc---EEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHH
Q 009394 223 TSKIVDSIQDRGIN---QVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVE 291 (535)
Q Consensus 223 ~~ki~~~l~~~~Id---~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~ 291 (535)
.+++.+.+.+++.+ .++-|||--+++.|..++-. ..+| +++|.||-| =+..+|.+.|.-++++
T Consensus 97 v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~-~~rg--ip~I~IPTT---lla~vda~~g~~~~v~ 162 (389)
T PRK06203 97 VEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAAT-AHRG--VRLIRIPTT---VLAQNDSGVGVKNGIN 162 (389)
T ss_pred HHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHH-hcCC--CCEEEEcCC---CccccCCCccchhhee
Confidence 67889999999998 99999998888887766532 2345 679999999 2355566666544444
No 165
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=39.62 E-value=58 Score=34.62 Aligned_cols=51 Identities=22% Similarity=0.362 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHhC--CcEEEEecCCcchHHHHHHHHHHHHc-----------C------CCeeEeeeccc
Q 009394 222 DTSKIVDSIQDRG--INQVYVLGGDGTQKGASAIFEEIRRR-----------G------LKVAVAGIPKT 272 (535)
Q Consensus 222 d~~ki~~~l~~~~--Id~LvvIGGdgS~~~A~~L~~~~~~~-----------g------~~i~VvgIPkT 272 (535)
..+++++.+++.+ .|.++-|||--.++.|..++-.+... + -.+++|.||-|
T Consensus 66 ~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTT 135 (355)
T TIGR03405 66 QLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTT 135 (355)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCC
Confidence 4678888888877 99999999999999887764331110 1 23678999987
No 166
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=38.82 E-value=61 Score=34.14 Aligned_cols=49 Identities=8% Similarity=0.098 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccC
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDND 276 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND 276 (535)
..+++++.+++ +.|.++-|||--.++.|..++ +. ++ +++|.||-|..+|
T Consensus 69 ~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~~--~g--ip~I~VPTT~~~~ 117 (332)
T cd08549 69 ELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-FK--VG--KPFISVPTAPSMD 117 (332)
T ss_pred HHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-HH--cC--CCEEEeCCCcccC
Confidence 35677888888 999999999999998888776 22 34 6799999998654
No 167
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=38.39 E-value=1.8e+02 Score=26.92 Aligned_cols=123 Identities=14% Similarity=0.167 Sum_probs=67.1
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHH-hchhcccCcceeccC-C---
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIV-NGIHKRGGTILGTSR-G--- 219 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V-~~i~~~GGs~LGTsR-~--- 219 (535)
+.||.+.+.||+.=.+..-+-+.. + +.. +.+|+- -+ ..+..+.+ .-.....-.+++-|- .
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~--l-r~~-G~eVi~---------LG--~~vp~e~i~~~a~~~~~d~V~lS~~~~~~ 67 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRA--L-TEA-GFEVIN---------LG--VMTSQEEFIDAAIETDADAILVSSLYGHG 67 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHH--H-HHC-CCEEEE---------CC--CCCCHHHHHHHHHHcCCCEEEEcCccccC
Confidence 457888888888766655443332 2 223 334441 11 12333333 333333334554442 2
Q ss_pred CCcHHHHHHHHHHhCC-cEEEEecCCcchHH--HHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHH
Q 009394 220 GHDTSKIVDSIQDRGI-NQVYVLGGDGTQKG--ASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRA 296 (535)
Q Consensus 220 ~~d~~ki~~~l~~~~I-d~LvvIGGdgS~~~--A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~a 296 (535)
.....++++.|++.+. +..+++||.-+... .....+.+++.|+ |..|+-+|-.+.++..
T Consensus 68 ~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~------------------~~vf~~~~~~~~i~~~ 129 (137)
T PRK02261 68 EIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGF------------------DRVFPPGTDPEEAIDD 129 (137)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCC------------------CEEECcCCCHHHHHHH
Confidence 2357788899999877 66789999764321 3344556666664 3345555556666666
Q ss_pred HHHH
Q 009394 297 ISAA 300 (535)
Q Consensus 297 i~~i 300 (535)
++..
T Consensus 130 l~~~ 133 (137)
T PRK02261 130 LKKD 133 (137)
T ss_pred HHHH
Confidence 5543
No 168
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=38.19 E-value=2.4e+02 Score=23.57 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=40.8
Q ss_pred EEEccCCCCC-chhHHHHHHHHHHHHhcCCeEE-EEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHHH
Q 009394 149 CIVTCGGLCP-GLNTVIREIVCGLYYMYGVHKV-LGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSKI 226 (535)
Q Consensus 149 aIvtsGG~ap-GmNavIr~vv~~l~~~~~~~~V-~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ki 226 (535)
.++.-|.+-| ..|..++.+.+.+....+...+ +|+... ...+++.+
T Consensus 3 llv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~--------------------------------~~P~i~~~ 50 (101)
T cd03409 3 LVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSG--------------------------------LGPDTEEA 50 (101)
T ss_pred EEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECC--------------------------------CCCCHHHH
Confidence 3455678887 8999999999888654432222 122211 24567888
Q ss_pred HHHHHHhCCcEEEEe
Q 009394 227 VDSIQDRGINQVYVL 241 (535)
Q Consensus 227 ~~~l~~~~Id~LvvI 241 (535)
++.|.+.|++.++++
T Consensus 51 l~~l~~~g~~~vvvv 65 (101)
T cd03409 51 IRELAEEGYQRVVIV 65 (101)
T ss_pred HHHHHHcCCCeEEEE
Confidence 999998898887764
No 169
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=37.87 E-value=76 Score=33.98 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc-------CC------CeeEeeecccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR-------GL------KVAVAGIPKTI 273 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-------g~------~i~VvgIPkTI 273 (535)
..+++++.+++.+.|.+|-|||--.++.|..++-.+... +. .+++|.||-|-
T Consensus 73 ~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~ 137 (377)
T cd08188 73 EVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTA 137 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 456778889999999999999999999987664322111 11 36789999885
No 170
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=37.85 E-value=60 Score=34.87 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc-------------CCCeeEeeecccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR-------------GLKVAVAGIPKTI 273 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-------------g~~i~VvgIPkTI 273 (535)
+..+.++.+++.+.|.+|-|||--.++.|..++-..... +-.+++|.||-|-
T Consensus 67 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta 131 (386)
T cd08191 67 ELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTA 131 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCC
Confidence 355677888899999999999999999988876433210 1146889999884
No 171
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.83 E-value=4e+02 Score=26.14 Aligned_cols=125 Identities=13% Similarity=0.130 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccC----CCcccCch--hHHHHHHHH
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPI----IDKSFGFD--TAVEEAQRA 296 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~g----tD~S~GFd--TAv~~~~~a 296 (535)
..+.++.+..+++|++++...+... ...+.+++.+.+ +|||.+ |.+++. ...+++.| .+.+.+++.
T Consensus 44 ~~~~i~~~~~~~vdgiii~~~~~~~--~~~~i~~~~~~~--iPvV~~----~~~~~~~~~~~~~~v~~d~~~~g~~~~~~ 115 (272)
T cd06313 44 QVAAIENMASQGWDFIAVDPLGIGT--LTEAVQKAIARG--IPVIDM----GTLIAPLQINVHSFLAPDNYFMGASVAQA 115 (272)
T ss_pred HHHHHHHHHHcCCCEEEEcCCChHH--hHHHHHHHHHCC--CcEEEe----CCCCCCCCCceEEEECCCcHHHHHHHHHH
Confidence 4467888889999999998654221 123334555555 456654 333321 11223333 344444443
Q ss_pred HHHHHhhhhcCcceEEEEEe-------cCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhC
Q 009394 297 ISAAHVEAESFENGIGVVKL-------MGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN 364 (535)
Q Consensus 297 i~~i~~~A~S~~~rv~iVEv-------MGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~ 364 (535)
+-+ ....+ +++.++.- .-|..||........ +..++-+.+..++.+ .-.+.+++.++++
T Consensus 116 l~~---~~~g~-~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 181 (272)
T cd06313 116 LCN---AMGGK-GKIAMLQGALGHTGAQGRAQGFNDVIKKYP--DIEVVDEQPANWDVS---KAARIWETWLTKY 181 (272)
T ss_pred HHH---HcCCC-ceEEEEECCCCCcchhHHHHHHHHHHHhCC--CCEEEeccCCCCCHH---HHHHHHHHHHHhC
Confidence 322 22233 46777741 136667776554211 233332323334433 3455566656554
No 172
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=36.93 E-value=1.1e+02 Score=29.89 Aligned_cols=91 Identities=18% Similarity=0.345 Sum_probs=58.3
Q ss_pred EEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccC---------CCeeeCCHhHHhchhcccCcceeccCC
Q 009394 149 CIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYA---------RNTIPLTPKIVNGIHKRGGTILGTSRG 219 (535)
Q Consensus 149 aIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~---------~~~~~L~~~~V~~i~~~GGs~LGTsR~ 219 (535)
+++.+||+.+-.... +.++ .....++++-.|..=|++ |++=-++++..+.+...|-.+.-....
T Consensus 1 ~~Ii~~g~~~~~~~~-----~~~~--~~~~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~ 73 (208)
T cd07995 1 ALILLGGPLPDSPLL-----LKLW--KKADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDE 73 (208)
T ss_pred CEEEECCcCCcchhH-----HHhh--ccCCEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCC
Confidence 367788888744433 2222 233478999999876654 233344455555554443333333332
Q ss_pred --CCcHHHHHHHHHHhCCcEEEEecCCcc
Q 009394 220 --GHDTSKIVDSIQDRGINQVYVLGGDGT 246 (535)
Q Consensus 220 --~~d~~ki~~~l~~~~Id~LvvIGGdgS 246 (535)
.-|++++++.+.+++.+-++++|+.|.
T Consensus 74 KD~TD~e~Al~~~~~~~~~~i~i~Ga~Gg 102 (208)
T cd07995 74 KDFTDFEKALKLALERGADEIVILGATGG 102 (208)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEccCCC
Confidence 237899999999999999999999997
No 173
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=36.83 E-value=3.5e+02 Score=26.26 Aligned_cols=42 Identities=10% Similarity=0.186 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeecc
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPK 271 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPk 271 (535)
+++.+.+.+.++|++++.+.+.... ..+++.+.| ++||.+-.
T Consensus 54 ~~~~~~l~~~~~dgiii~~~~~~~~----~~~~~~~~~--ipvV~~~~ 95 (275)
T cd06295 54 DWLARYLASGRADGVILIGQHDQDP----LPERLAETG--LPFVVWGR 95 (275)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhCC--CCEEEECC
Confidence 4566777889999999998765421 234455555 55665543
No 174
>PRK05637 anthranilate synthase component II; Provisional
Probab=36.68 E-value=70 Score=31.63 Aligned_cols=52 Identities=21% Similarity=0.382 Sum_probs=34.6
Q ss_pred HHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHH
Q 009394 228 DSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEE 292 (535)
Q Consensus 228 ~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~ 292 (535)
+.+.+.+.+++|+-||-|+...+....+.+++..-++||.|| |+|+..-...
T Consensus 38 ~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGI-------------ClG~Qlla~a 89 (208)
T PRK05637 38 EEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGI-------------CLGFQALLEH 89 (208)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEE-------------cHHHHHHHHH
Confidence 445577899999999999997765433333221124567766 8998866544
No 175
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=36.65 E-value=3.9e+02 Score=25.65 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccc
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKT 272 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkT 272 (535)
...+.+.+..+++|++++...+.... .+.+.+.+.+ ++||.+=..
T Consensus 45 ~~~~~~~l~~~~vdgiii~~~~~~~~---~~~~~~~~~~--ipvv~i~~~ 89 (270)
T cd01545 45 AERVRALLQRSRVDGVILTPPLSDNP---ELLDLLDEAG--VPYVRIAPG 89 (270)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCcc---HHHHHHHhcC--CCEEEEecC
Confidence 45677788889999999998874322 2233444455 456655333
No 176
>PRK04011 peptide chain release factor 1; Provisional
Probab=36.29 E-value=1.1e+02 Score=33.49 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=17.8
Q ss_pred cHHHHHHhHhcCCccEEecCCC
Q 009394 322 GFIAMYATIASRDVDCCLIPES 343 (535)
Q Consensus 322 G~LAl~aaLAs~~ad~ilIPE~ 343 (535)
|.=....||..|.++..||+|.
T Consensus 300 G~~~V~~Ale~GAVetLLV~d~ 321 (411)
T PRK04011 300 GEEEVRKALEMGAVDTLLISED 321 (411)
T ss_pred cHHHHHHHHHcCCceEEEEecc
Confidence 6667778888878899999875
No 177
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=35.67 E-value=55 Score=29.22 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=37.8
Q ss_pred CCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 220 GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 220 ~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
-.+.++|++..++.++++ +.||-|.+.-...|++.+.+.|+ .++|-
T Consensus 60 yl~~e~I~~ia~~~g~~~--i~pGyg~lse~~~fa~~~~~~gi--~fiGp 105 (110)
T PF00289_consen 60 YLNIEAIIDIARKEGADA--IHPGYGFLSENAEFAEACEDAGI--IFIGP 105 (110)
T ss_dssp TTSHHHHHHHHHHTTESE--EESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred hccHHHHhhHhhhhcCcc--cccccchhHHHHHHHHHHHHCCC--EEECc
Confidence 357899999999997766 56999999999999999988774 46664
No 178
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=35.11 E-value=2.4e+02 Score=27.89 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=26.1
Q ss_pred hcccCcceeccCCCCcHHHHHHHHHH--hCCcEEEEecCCcch
Q 009394 207 HKRGGTILGTSRGGHDTSKIVDSIQD--RGINQVYVLGGDGTQ 247 (535)
Q Consensus 207 ~~~GGs~LGTsR~~~d~~ki~~~l~~--~~Id~LvvIGGdgS~ 247 (535)
...|||.|++. +.++++++.+.+ .+.+-++|.+|-+..
T Consensus 4 iK~GGs~l~~~---~~~~~~~~~i~~l~~g~~vvvV~Sg~~~~ 43 (227)
T cd04234 4 QKFGGTSVASA---ERIKRVADIIKAYEKGNRVVVVVSAMGGV 43 (227)
T ss_pred EEECccccCCH---HHHHHHHHHHHHhhcCCCEEEEEcCCCcc
Confidence 45789888653 345666666555 689999999775543
No 179
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=35.05 E-value=1.2e+02 Score=30.96 Aligned_cols=86 Identities=19% Similarity=0.277 Sum_probs=48.7
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTS 224 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 224 (535)
..++.++ ||. |+ ++..+++.+...| +.+|.|.++||-. .+ -....++.|...+-.+|=.+=+....|
T Consensus 105 ~~~v~ll--G~~-~~---v~~~a~~~l~~~y-~l~i~g~~~Gyf~---~~---e~~~i~~~I~~s~~dil~VglG~PkQE 171 (243)
T PRK03692 105 GTPVFLV--GGK-PE---VLAQTEAKLRTQW-NVNIVGSQDGYFT---PE---QRQALFERIHASGAKIVTVAMGSPKQE 171 (243)
T ss_pred CCeEEEE--CCC-HH---HHHHHHHHHHHHh-CCEEEEEeCCCCC---HH---HHHHHHHHHHhcCCCEEEEECCCcHHH
Confidence 4567666 554 44 4444555555567 6789999999853 11 112245666666665543333333344
Q ss_pred HHHHH-HHHhCCcEEEEecC
Q 009394 225 KIVDS-IQDRGINQVYVLGG 243 (535)
Q Consensus 225 ki~~~-l~~~~Id~LvvIGG 243 (535)
..+.. .+..+...++.+||
T Consensus 172 ~~~~~~~~~~~~~v~~gvGg 191 (243)
T PRK03692 172 IFMRDCRLVYPDALYMGVGG 191 (243)
T ss_pred HHHHHHHHhCCCCEEEEeCe
Confidence 44444 44446666777787
No 180
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=35.04 E-value=57 Score=31.43 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=31.7
Q ss_pred HHHHHhCCcEEEEecCCcchHHHH---HHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHH
Q 009394 228 DSIQDRGINQVYVLGGDGTQKGAS---AIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEE 292 (535)
Q Consensus 228 ~~l~~~~Id~LvvIGGdgS~~~A~---~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~ 292 (535)
+.+.+++.|+||+-||.|+..... .+.+++ ..++||.|| |+|+.-....
T Consensus 37 ~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~---~~~~PvLGI-------------C~G~Qll~~~ 88 (188)
T TIGR00566 37 QEIEALLPLLIVISPGPCTPNEAGISLEAIRHF---AGKLPILGV-------------CLGHQAMGQA 88 (188)
T ss_pred HHHHhcCCCEEEEcCCCCChhhcchhHHHHHHh---ccCCCEEEE-------------CHHHHHHHHH
Confidence 445677899999999999875422 233332 224567766 8888755543
No 181
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=34.80 E-value=57 Score=34.42 Aligned_cols=45 Identities=7% Similarity=0.269 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKT 272 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkT 272 (535)
..+++++.+++ +.|.++-|||--.++.|..++.. ++ +++|.||-|
T Consensus 69 ~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~---~~--~p~i~IPTT 113 (348)
T cd08175 69 AVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK---TG--IPYISVPTA 113 (348)
T ss_pred HHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh---cC--CCEEEecCc
Confidence 35667777777 99999999999999988887632 23 679999999
No 182
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=34.69 E-value=3.1e+02 Score=30.44 Aligned_cols=139 Identities=22% Similarity=0.212 Sum_probs=90.2
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHH-
Q 009394 147 HACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSK- 225 (535)
Q Consensus 147 ~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~k- 225 (535)
.+||--+ ||-==.||++..+.+... +.-+ .++.|...|+.. ||- |.=++.|+..
T Consensus 13 ~~Gi~SV---Csahp~VieAAl~~a~~~--~~pv--------------LiEAT~NQVdq~---GGY---TGmtP~dF~~~ 67 (421)
T PRK15052 13 HIGICSV---CSAHPLVIEAALAFDLNS--TRKV--------------LIEATSNQVNQF---GGY---TGMTPADFREF 67 (421)
T ss_pred CCceeeE---CCCCHHHHHHHHHHHhhc--CCcE--------------EEEecccccccc---CCc---CCCCHHHHHHH
Confidence 4566665 555557899988766431 1222 367787777765 775 4445556544
Q ss_pred HHHHHHHhCCcE-EEEecCC-------------cchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHH
Q 009394 226 IVDSIQDRGINQ-VYVLGGD-------------GTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVE 291 (535)
Q Consensus 226 i~~~l~~~~Id~-LvvIGGd-------------gS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~ 291 (535)
+.+.-++.+++. .+++||| .+|..|..+.+...+.|+. -|+|=.|++ ..+-..-+.-++-++
T Consensus 68 V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca~d~~~L~d~~vA~ 143 (421)
T PRK15052 68 VYGIADKVGFPRERIILGGDHLGPNCWQQEPADAAMEKSVELVKAYVRAGFS--KIHLDASMS--CADDPIPLAPETVAE 143 (421)
T ss_pred HHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--ccCCCccCCHHHHHH
Confidence 444566779998 9999998 2466666666666667886 688888887 222235567788899
Q ss_pred HHHHHHHHHHhhhh--cCcceEEEE
Q 009394 292 EAQRAISAAHVEAE--SFENGIGVV 314 (535)
Q Consensus 292 ~~~~ai~~i~~~A~--S~~~rv~iV 314 (535)
.+++.|..+-.++. ....-+++|
T Consensus 144 Raa~L~~~aE~~~~~~~~~~~vYvI 168 (421)
T PRK15052 144 RAAVLCQAAESVATDCQREQLSYVI 168 (421)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEe
Confidence 99888886555544 223346777
No 183
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=34.65 E-value=56 Score=31.35 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=36.1
Q ss_pred eeccCCCCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeecccc
Q 009394 214 LGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTI 273 (535)
Q Consensus 214 LGTsR~~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 273 (535)
.+--|.++.+.+++++.++.+++.+|.+.|-...-. -.++- ....||||+|-..
T Consensus 33 ~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lp-gvva~-----~t~~PVIgvP~~~ 86 (156)
T TIGR01162 33 VSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLP-GMVAA-----LTPLPVIGVPVPS 86 (156)
T ss_pred ECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhH-HHHHh-----ccCCCEEEecCCc
Confidence 334467777889999999999987777766543322 11221 3468899999754
No 184
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=34.38 E-value=6.4e+02 Score=27.40 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHH---HHHHHHHHHHc---CCCeeEeeeccccccCccCCCcccCchhHHHHHHHHH
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKG---ASAIFEEIRRR---GLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAI 297 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~---A~~L~~~~~~~---g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai 297 (535)
+.|.+.+++++-+.++|+..--+-.. ...+.++++++ ...++|+.++. .+..+ .+.-||+.|++.+.+.+
T Consensus 71 ~~i~~~~~~~~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~t---pgf~g-~~~~G~~~a~~al~~~~ 146 (428)
T cd01965 71 EALKNLLSRYKPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYAST---PSFKG-SHETGYDNAVKAIIEQL 146 (428)
T ss_pred HHHHHHHHhcCCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeC---CCCCC-cHHHHHHHHHHHHHHHH
Confidence 45556667789999998875544322 12234444432 24466666543 22233 34568888887776544
No 185
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.29 E-value=3.3e+02 Score=26.16 Aligned_cols=40 Identities=13% Similarity=0.241 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
+.+.+.+.+.++|++++...+..- .+.+++.+++ ++||.+
T Consensus 50 ~~~~~~~~~~~~dgiii~~~~~~~----~~~~~~~~~~--ipvV~~ 89 (270)
T cd06294 50 EEVKKMIQQKRVDGFILLYSREDD----PIIDYLKEEK--FPFVVI 89 (270)
T ss_pred HHHHHHHHHcCcCEEEEecCcCCc----HHHHHHHhcC--CCEEEE
Confidence 344455667789999999764432 2234455556 456644
No 186
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=34.24 E-value=61 Score=34.42 Aligned_cols=64 Identities=22% Similarity=0.387 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHhC---CcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHH
Q 009394 222 DTSKIVDSIQDRG---INQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVE 291 (535)
Q Consensus 222 d~~ki~~~l~~~~---Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~ 291 (535)
..+++++.+.+++ .|.++.|||--.++.|..++... .++ +++|.||-|. +..+|-+.|.-++++
T Consensus 68 ~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTTl---la~~ds~~g~k~~i~ 134 (344)
T cd08169 68 TVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTL-FRG--IAFIRVPTTL---LAQSDSGVGGKTGIN 134 (344)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CcEEEecCCc---ccccccCccceEeEe
Confidence 4678888888877 89999999998888887766432 235 6799999994 244566677666655
No 187
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=34.16 E-value=5.2e+02 Score=26.34 Aligned_cols=22 Identities=5% Similarity=-0.010 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCcEEEEecCCc
Q 009394 224 SKIVDSIQDRGINQVYVLGGDG 245 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdg 245 (535)
.+.++.|...++|++++.+.+-
T Consensus 105 ~~~i~~l~~~~vdgiIi~~~~~ 126 (343)
T PRK10727 105 RQAIEQLIRHRCAALVVHAKMI 126 (343)
T ss_pred HHHHHHHHhcCCCEEEEecCCC
Confidence 3567778889999999997643
No 188
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=34.13 E-value=71 Score=36.03 Aligned_cols=49 Identities=27% Similarity=0.375 Sum_probs=33.3
Q ss_pred CcEEEEecCCcchHHH--HHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHH
Q 009394 235 INQVYVLGGDGTQKGA--SAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAIS 298 (535)
Q Consensus 235 Id~LvvIGGdgS~~~A--~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~ 298 (535)
+|+++|-||+|.--.. -...+++++++ +|..|| |+|++.|+=+.++.+-
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn~--iP~lGI-------------ClGmQ~aviE~ARnv~ 394 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYARENN--IPFLGI-------------CLGMQLAVIEFARNVL 394 (533)
T ss_pred CCEEEeCCCCCcCchHHHHHHHHHHHhcC--CCEEEE-------------chhHHHHHHHHHHHhc
Confidence 9999999999963222 23345555543 445554 9999999877766443
No 189
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=33.51 E-value=5.9e+02 Score=26.75 Aligned_cols=160 Identities=18% Similarity=0.176 Sum_probs=93.4
Q ss_pred EEccCCCCCchh-HHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCc-ceeccCC-----CCc
Q 009394 150 IVTCGGLCPGLN-TVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGT-ILGTSRG-----GHD 222 (535)
Q Consensus 150 IvtsGG~apGmN-avIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs-~LGTsR~-----~~d 222 (535)
|+.+||+.=-++ .-+..+++.+.. .+..+. ++-|-+..+.. ...++.+.+..+...|=. .+++--. .+.
T Consensus 140 VilSGGDPl~~~~~~L~~ll~~l~~-i~~v~~--iri~Tr~~v~~-p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~ 215 (321)
T TIGR03822 140 VILTGGDPLVLSPRRLGDIMARLAA-IDHVKI--VRFHTRVPVAD-PARVTPALIAALKTSGKTVYVALHANHARELTAE 215 (321)
T ss_pred EEEeCCCcccCCHHHHHHHHHHHHh-CCCccE--EEEeCCCcccC-hhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHH
Confidence 677888876553 578888887764 332222 33344443321 234566666666555512 3443221 234
Q ss_pred HHHHHHHHHHhCCcEEE---Ee-cCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHH
Q 009394 223 TSKIVDSIQDRGINQVY---VL-GGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAIS 298 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~Lv---vI-GGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~ 298 (535)
..+.++.|++.||..+. ++ |=|++......|.+.+.+.|+..-.+.... .++|+ --|.+..+.+.+.+.
T Consensus 216 ~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~----p~~g~---~~f~~~~~~~~~i~~ 288 (321)
T TIGR03822 216 ARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLD----LAPGT---AHFRVTIEEGQALVR 288 (321)
T ss_pred HHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecC----CCCCc---ccccCcHHHHHHHHH
Confidence 66788889999997643 44 555666667778877777675422222221 22232 345677778888888
Q ss_pred HHHhhhhcCcceEEEEEecCCC
Q 009394 299 AAHVEAESFENGIGVVKLMGRY 320 (535)
Q Consensus 299 ~i~~~A~S~~~rv~iVEvMGR~ 320 (535)
.++...++.-.--+++|+.|..
T Consensus 289 ~l~~~~~g~~~p~~v~~~~~~~ 310 (321)
T TIGR03822 289 ALRGRISGLAQPTYVLDIPGGH 310 (321)
T ss_pred HHHHhCCCCcceeEEEeCCCCC
Confidence 7776655543446888988854
No 190
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=33.40 E-value=3e+02 Score=25.26 Aligned_cols=118 Identities=16% Similarity=0.146 Sum_probs=62.0
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCH-hHHhchhcccCcceeccCC----
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTP-KIVNGIHKRGGTILGTSRG---- 219 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~-~~V~~i~~~GGs~LGTsR~---- 219 (535)
+.||-+-+.|||.= ..=..++..... ..+.+|+- .+-. .++ +.++.....+..++|-|-.
T Consensus 2 ~~~v~~a~~g~D~H---d~g~~iv~~~l~-~~GfeVi~---------lg~~--~s~e~~v~aa~e~~adii~iSsl~~~~ 66 (132)
T TIGR00640 2 RPRILVAKMGQDGH---DRGAKVIATAYA-DLGFDVDV---------GPLF--QTPEEIARQAVEADVHVVGVSSLAGGH 66 (132)
T ss_pred CCEEEEEeeCCCcc---HHHHHHHHHHHH-hCCcEEEE---------CCCC--CCHHHHHHHHHHcCCCEEEEcCchhhh
Confidence 35888888888653 222233332222 23345431 1111 222 3455566666666665442
Q ss_pred CCcHHHHHHHHHHhCC-cEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHH
Q 009394 220 GHDTSKIVDSIQDRGI-NQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAIS 298 (535)
Q Consensus 220 ~~d~~ki~~~l~~~~I-d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~ 298 (535)
.+...++++.|++.+. +..+++||.=.-.. .+++++.|+ |..|+-.|-+..+.+++.
T Consensus 67 ~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~----~~~l~~~Gv------------------d~~~~~gt~~~~i~~~l~ 124 (132)
T TIGR00640 67 LTLVPALRKELDKLGRPDILVVVGGVIPPQD----FDELKEMGV------------------AEIFGPGTPIPESAIFLL 124 (132)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCChHh----HHHHHHCCC------------------CEEECCCCCHHHHHHHHH
Confidence 1346777788888777 55677777544322 223344453 555666666666666655
Q ss_pred H
Q 009394 299 A 299 (535)
Q Consensus 299 ~ 299 (535)
.
T Consensus 125 ~ 125 (132)
T TIGR00640 125 K 125 (132)
T ss_pred H
Confidence 4
No 191
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=33.23 E-value=50 Score=33.58 Aligned_cols=88 Identities=27% Similarity=0.384 Sum_probs=54.1
Q ss_pred EEEEEccccccccCCCeeeCCHhHHhchhcccCc--ce-eccCC--CCcHHHHHHHHHHhCCcEEEEecCCcchH-----
Q 009394 179 KVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGT--IL-GTSRG--GHDTSKIVDSIQDRGINQVYVLGGDGTQK----- 248 (535)
Q Consensus 179 ~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs--~L-GTsR~--~~d~~ki~~~l~~~~Id~LvvIGGdgS~~----- 248 (535)
..+-|.+|-.| .....++.....+...+|- +. =|+|. ...++..+..+...||+.+++++||-.-.
T Consensus 30 d~v~Vt~~~~g----~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~ 105 (274)
T cd00537 30 DFVSVTDGAGG----STRDMTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPG 105 (274)
T ss_pred CEEEeCCCCCC----chhhhHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCC
Confidence 34445555444 2223344455555555552 11 14454 24678888999999999999999986643
Q ss_pred -------HHHHHHHHHHHc---CCCeeEeeec
Q 009394 249 -------GASAIFEEIRRR---GLKVAVAGIP 270 (535)
Q Consensus 249 -------~A~~L~~~~~~~---g~~i~VvgIP 270 (535)
.|..|.+.+++. ++++.+.+.|
T Consensus 106 ~~~~~~~~a~~Li~~i~~~~~~~~~igva~yP 137 (274)
T cd00537 106 AKPVGFVYAVDLVELIRKENGGGFSIGVAAYP 137 (274)
T ss_pred CCCCCCCCHHHHHHHHHHhcCCCCccccccCC
Confidence 267777777653 4555566666
No 192
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=33.15 E-value=63 Score=34.98 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=45.2
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccC
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPI 279 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~g 279 (535)
++.+++...+.+.+.|.++=|||--+++.|..++.. +.+++|.||-+=++|=+.
T Consensus 71 ~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~-----~~~pfIsvPT~AS~Da~~ 124 (360)
T COG0371 71 EEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYR-----LGLPFISVPTIASTDAIT 124 (360)
T ss_pred HHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEecCcccccccc
Confidence 567888888888899999999999999999888753 457799999998888544
No 193
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.89 E-value=4.6e+02 Score=25.33 Aligned_cols=83 Identities=16% Similarity=0.194 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccC-C-CcccCchhHHHHHHHHHHHH
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPI-I-DKSFGFDTAVEEAQRAISAA 300 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~g-t-D~S~GFdTAv~~~~~ai~~i 300 (535)
..++++.+..+++|++++.+.+... .....+.+.+.+ +|+|.+ |.+.+. . -.++++|-.- ....+.+.+
T Consensus 46 ~~~~i~~l~~~~vdgvii~~~~~~~--~~~~l~~~~~~~--ipvV~~----~~~~~~~~~~~~v~~d~~~-~~~~~~~~l 116 (273)
T cd06310 46 QVNLLENAIARGPDAILLAPTDAKA--LVPPLKEAKDAG--IPVVLI----DSGLNSDIAVSFVATDNVA-AGKLAAEAL 116 (273)
T ss_pred HHHHHHHHHHhCCCEEEEcCCChhh--hHHHHHHHHHCC--CCEEEe----cCCCCCCcceEEEeeChHH-HHHHHHHHH
Confidence 4567788888999999998766421 122234444555 456654 333221 1 1345555311 122333333
Q ss_pred HhhhhcCcceEEEEE
Q 009394 301 HVEAESFENGIGVVK 315 (535)
Q Consensus 301 ~~~A~S~~~rv~iVE 315 (535)
......+ +++.++-
T Consensus 117 ~~~~~g~-~~i~~i~ 130 (273)
T cd06310 117 AELLGKK-GKVAVIS 130 (273)
T ss_pred HHHcCCC-ceEEEEe
Confidence 3332233 4677764
No 194
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.74 E-value=5e+02 Score=25.67 Aligned_cols=21 Identities=14% Similarity=0.003 Sum_probs=15.5
Q ss_pred cCCCC--CchhHHHHHHHHHHHH
Q 009394 153 CGGLC--PGLNTVIREIVCGLYY 173 (535)
Q Consensus 153 sGG~a--pGmNavIr~vv~~l~~ 173 (535)
.|||. |-...++.++-+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~ 35 (269)
T cd06287 13 AGGPSRLGFMMEVAAAAAESALE 35 (269)
T ss_pred cCCcccCccHHHHHHHHHHHHHH
Confidence 46664 7788899998887754
No 195
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=32.72 E-value=6.7e+02 Score=27.17 Aligned_cols=151 Identities=14% Similarity=0.123 Sum_probs=76.4
Q ss_pred HHHHHHHHHh-CCcEEEEecCCcchHHH---HHHHHHHHHcCCC-eeEeeeccccccCccCCCcccCchhHHHHHHHHHH
Q 009394 224 SKIVDSIQDR-GINQVYVLGGDGTQKGA---SAIFEEIRRRGLK-VAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAIS 298 (535)
Q Consensus 224 ~ki~~~l~~~-~Id~LvvIGGdgS~~~A---~~L~~~~~~~g~~-i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~ 298 (535)
+.|.+..+++ +.+.++|++.--+-... ..+.++++++ .+ ++||.++ ..+..+..+.-||+.|++.+.+.+-
T Consensus 77 ~aI~~~~~~~p~p~~i~V~~tc~~~liGdDi~~v~~~~~~~-~~~~~vi~v~---tpgf~g~~~~~G~~~a~~al~~~l~ 152 (415)
T cd01977 77 KNIIEAFKEFPDIKRMTVYTTCTTALIGDDIKAVAKEVMEE-LPDVDIFVCN---APGFAGPSQSKGHHVLNIAWINQKV 152 (415)
T ss_pred HHHHHHHHhCCCCcEEEEECCCchhhhcCCHHHHHHHHHHh-cCCCeEEEEe---CCCcCCcchhHHHHHHHHHHHHHhh
Confidence 3444555666 67889998865443221 1233344333 23 6777776 2233333345678877776655332
Q ss_pred HHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhCCcEEE-EEecCCCc
Q 009394 299 AAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVI-VIAEGAGQ 377 (535)
Q Consensus 299 ~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~~~~vI-VVaEGa~~ 377 (535)
.........++ .+| +|++.. .. +.++.|++-+++-|.-++ +...|..-
T Consensus 153 ~~~~~~~~~~~------------------------~VN--liG~~~--~~---~d~~ei~~lL~~~Gl~v~~~~~~~~t~ 201 (415)
T cd01977 153 GTVEPEITSDY------------------------TIN--YIGDYN--IQ---GDTEVLQKYFERMGIQVLSTFTGNGTY 201 (415)
T ss_pred CcCCcCcCCCC------------------------cEE--EEccCC--Cc---ccHHHHHHHHHHcCCeEEEEECCCCCH
Confidence 11000000011 222 334322 22 345667777777676664 55655542
Q ss_pred hhhHHHhhhcccccccCCccch-hhHHHHHHHHHHHhCC
Q 009394 378 ELLSEIMHTMDQQDASGNKLLQ-DVGLWISQKIRDHFGK 415 (535)
Q Consensus 378 ~~~~~~~~~~~~~Da~Gn~~l~-~ig~~L~~~I~~~~~~ 415 (535)
+-+ .. .-.+.-|..+. ..+..+++.++++|+.
T Consensus 202 ~ei----~~--~~~A~lnlv~~~~~~~~~A~~L~er~Gi 234 (415)
T cd01977 202 DDL----RW--MHRAKLNVVNCARSAGYIANELKKRYGI 234 (415)
T ss_pred HHH----Hh--cccCCEEEEEchhHHHHHHHHHHHHhCC
Confidence 211 11 12344455443 5677889999988874
No 196
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=32.61 E-value=46 Score=26.46 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=21.4
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHH
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGAS 251 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~ 251 (535)
.+..+.|++|+|| |+.||+-|+..|.
T Consensus 13 p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 13 PRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred hHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 4667889999999 6999999986543
No 197
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.60 E-value=4.7e+02 Score=25.29 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
..+.+.+...++|++++.+.+..- ..+.+.+.+ +++|.+
T Consensus 48 ~~~~~~l~~~~vdgiii~~~~~~~-----~~~~l~~~~--ipvV~~ 86 (268)
T cd06277 48 FELPSFLEDGKVDGIILLGGISTE-----YIKEIKELG--IPFVLV 86 (268)
T ss_pred HHHHHHHHHCCCCEEEEeCCCChH-----HHHHHhhcC--CCEEEE
Confidence 456777888999999999865431 133444455 556643
No 198
>CHL00101 trpG anthranilate synthase component 2
Probab=32.50 E-value=60 Score=31.29 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=17.1
Q ss_pred HHHHhCCcEEEEecCCcchHH
Q 009394 229 SIQDRGINQVYVLGGDGTQKG 249 (535)
Q Consensus 229 ~l~~~~Id~LvvIGGdgS~~~ 249 (535)
.+.+.++|+||+.||.|+...
T Consensus 38 ~~~~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 38 KIKNLNIRHIIISPGPGHPRD 58 (190)
T ss_pred HHhhCCCCEEEECCCCCChHH
Confidence 345678999999999998754
No 199
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=32.31 E-value=1.9e+02 Score=26.34 Aligned_cols=68 Identities=19% Similarity=0.365 Sum_probs=42.8
Q ss_pred EEEEEccccccccCC----------CeeeCCHhHHhchhcccCcceeccCC-CCcHHHHHHHHHHhCCcEEEEecCCcc
Q 009394 179 KVLGIEGGYRGFYAR----------NTIPLTPKIVNGIHKRGGTILGTSRG-GHDTSKIVDSIQDRGINQVYVLGGDGT 246 (535)
Q Consensus 179 ~V~Gi~~G~~GL~~~----------~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~~ki~~~l~~~~Id~LvvIGGdgS 246 (535)
-++++-.|..=|++. ++=-++++...-+...|-.++-.... .-|++++++.+.+++.+-++++|+-|.
T Consensus 18 ~~i~aDgGa~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~kD~TD~e~Al~~~~~~~~~~i~v~Ga~Gg 96 (123)
T PF04263_consen 18 FIIAADGGANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGVEIIHFPEKDYTDLEKALEYAIEQGPDEIIVLGALGG 96 (123)
T ss_dssp EEEEETTHHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTTEEEEE-STTS-HHHHHHHHHHHTTTSEEEEES-SSS
T ss_pred EEEEEchHHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhccceecccccccCHHHHHHHHHHHCCCCEEEEEecCCC
Confidence 455666665555433 33345555555555665555544411 237899999999999999999999996
No 200
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=32.19 E-value=4.6e+02 Score=25.07 Aligned_cols=83 Identities=13% Similarity=0.185 Sum_probs=48.3
Q ss_pred EEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHHHH
Q 009394 148 ACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSKIV 227 (535)
Q Consensus 148 iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ki~ 227 (535)
|||+...-..|-.+..+.++-+.+.. ++ .++. ++-+.+......+.+
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~-------------------------------~~~~~~~~~~~~~~i 48 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYE-NG-YQML-------------------------------LMNTNFSIEKEIEAL 48 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHH-CC-CEEE-------------------------------EEeCCCCHHHHHHHH
Confidence 67777766777777777777766643 22 2221 011111122334667
Q ss_pred HHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 228 DSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 228 ~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
+.|...++|++++.+.+.+. .+.+.+.+.+++ +|.+
T Consensus 49 ~~l~~~~~dgii~~~~~~~~----~~~~~~~~~~ip--vv~~ 84 (259)
T cd01542 49 ELLARQKVDGIILLATTITD----EHREAIKKLNVP--VVVV 84 (259)
T ss_pred HHHHhcCCCEEEEeCCCCCH----HHHHHHhcCCCC--EEEE
Confidence 77888999999999876542 233444455654 5544
No 201
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=32.12 E-value=1.9e+02 Score=27.53 Aligned_cols=38 Identities=21% Similarity=0.380 Sum_probs=25.3
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccc
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYR 188 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~ 188 (535)
+.+|.++ ||. |+ ++..+...+...|++.+|.|.++||-
T Consensus 48 ~~~ifll--G~~-~~---~~~~~~~~l~~~yP~l~ivg~~~g~f 85 (172)
T PF03808_consen 48 GKRIFLL--GGS-EE---VLEKAAANLRRRYPGLRIVGYHHGYF 85 (172)
T ss_pred CCeEEEE--eCC-HH---HHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3455554 444 44 44444555666799999999999976
No 202
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=31.71 E-value=2.4e+02 Score=25.06 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=28.5
Q ss_pred HHhchhcccCcceeccCC----CCcHHHHHHHHHHhCC-cEEEEecCCcch
Q 009394 202 IVNGIHKRGGTILGTSRG----GHDTSKIVDSIQDRGI-NQVYVLGGDGTQ 247 (535)
Q Consensus 202 ~V~~i~~~GGs~LGTsR~----~~d~~ki~~~l~~~~I-d~LvvIGGdgS~ 247 (535)
.+..+...+-.+++-|-. .+..+++++.|++.+. +..+++||...-
T Consensus 42 ~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~ 92 (122)
T cd02071 42 IVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPP 92 (122)
T ss_pred HHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCH
Confidence 344455555555555433 1346777888888877 667888887653
No 203
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=31.42 E-value=3.5e+02 Score=29.82 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=25.5
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHH---cCCCeeEe-eecccccc
Q 009394 235 INQVYVLGGDGTQKGASAIFEEIRR---RGLKVAVA-GIPKTIDN 275 (535)
Q Consensus 235 Id~LvvIGGdgS~~~A~~L~~~~~~---~g~~i~Vv-gIPkTIDN 275 (535)
+|.++|+=|-||...-..+.+|.-. ..+++||| ||=--+|.
T Consensus 188 ~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGHe~D~ 232 (432)
T TIGR00237 188 CDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGHETDF 232 (432)
T ss_pred CCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCcCCCc
Confidence 7999999999998765544333222 24566665 45444443
No 204
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=31.08 E-value=49 Score=29.41 Aligned_cols=90 Identities=21% Similarity=0.310 Sum_probs=53.9
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccC--CCCcH
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSR--GGHDT 223 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR--~~~d~ 223 (535)
|||.|+=+||-- +| +...+.+...+.+||.... -.|.. -++.+. ...+.
T Consensus 1 MkVLviGsGgRE---HA----ia~~l~~s~~v~~v~~aPG-N~G~~---------------------~~~~~~~~~~~d~ 51 (100)
T PF02844_consen 1 MKVLVIGSGGRE---HA----IAWKLSQSPSVEEVYVAPG-NPGTA---------------------ELGKNVPIDITDP 51 (100)
T ss_dssp EEEEEEESSHHH---HH----HHHHHTTCTTEEEEEEEE---TTGG---------------------GTSEEE-S-TT-H
T ss_pred CEEEEECCCHHH---HH----HHHHHhcCCCCCEEEEeCC-CHHHH---------------------hhceecCCCCCCH
Confidence 688888888642 33 3334433334567876542 22221 122221 24678
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
+.+++..++++|| |+|||-..-+. .=|++.+++.|+ +|+|=
T Consensus 52 ~~l~~~a~~~~id-lvvvGPE~pL~--~Gl~D~l~~~gi--~vfGP 92 (100)
T PF02844_consen 52 EELADFAKENKID-LVVVGPEAPLV--AGLADALRAAGI--PVFGP 92 (100)
T ss_dssp HHHHHHHHHTTES-EEEESSHHHHH--TTHHHHHHHTT---CEES-
T ss_pred HHHHHHHHHcCCC-EEEECChHHHH--HHHHHHHHHCCC--cEECc
Confidence 9999999999999 77888777664 346788888884 46653
No 205
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=31.04 E-value=1.3e+02 Score=30.45 Aligned_cols=98 Identities=18% Similarity=0.269 Sum_probs=62.6
Q ss_pred cccccCccCCCcccCchhHHHHHHHHH-HHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCC
Q 009394 271 KTIDNDIPIIDKSFGFDTAVEEAQRAI-SAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEG 349 (535)
Q Consensus 271 kTIDNDI~gtD~S~GFdTAv~~~~~ai-~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~ 349 (535)
.|+.-|+.+-....|..-+ + +.+.+ ..+......+......-++-|+.-=-+|.++.||. +|++++.=|-...+|.
T Consensus 95 ~tV~~evafg~~n~g~~~~-e-~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~-~P~iliLDEPta~LD~ 171 (235)
T COG1122 95 PTVEDEVAFGLENLGLPRE-E-IEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM-GPEILLLDEPTAGLDP 171 (235)
T ss_pred CcHHHHHhhchhhcCCCHH-H-HHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHc-CCCEEEEcCCCCCCCH
Confidence 6788888887778888775 2 32222 23333333333345566888888888999999999 7999888776666663
Q ss_pred --cchHHHHHHHHHHhC-CcEEEEEe
Q 009394 350 --PGGLFEYIEKRLKEN-GHMVIVIA 372 (535)
Q Consensus 350 --~~~l~e~I~~rl~~~-~~~vIVVa 372 (535)
...+++.++ +++.. +..+|++.
T Consensus 172 ~~~~~l~~~l~-~L~~~~~~tii~~t 196 (235)
T COG1122 172 KGRRELLELLK-KLKEEGGKTIIIVT 196 (235)
T ss_pred HHHHHHHHHHH-HHHhcCCCeEEEEe
Confidence 234555444 34444 45566554
No 206
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=30.88 E-value=1.4e+02 Score=30.64 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=40.6
Q ss_pred cceEEEEEecCCCccHHHHHHhHhcCCc---cEEecCCCCCCCCCcchHHHHHHHHHHhC--CcEEEEEecCC
Q 009394 308 ENGIGVVKLMGRYSGFIAMYATIASRDV---DCCLIPESPFYLEGPGGLFEYIEKRLKEN--GHMVIVIAEGA 375 (535)
Q Consensus 308 ~~rv~iVEvMGR~sG~LAl~aaLAs~~a---d~ilIPE~pf~l~~~~~l~e~I~~rl~~~--~~~vIVVaEGa 375 (535)
+..+.++|+ ..||+...||+-.-.+ .++|.|+.|. ...+.|++++++. .+.-|+|+.-.
T Consensus 88 ~~~~~i~~~---~~G~v~anAGID~SN~~~g~v~LLP~DPd------~sA~~ir~~l~~~~g~~v~VIItDt~ 151 (243)
T TIGR01916 88 GTPFLITET---RHGHVCANAGIDESNVGNGELLLLPEDPD------ASAEKIRRGLRELTGVDVGVIITDTN 151 (243)
T ss_pred cCCeEEEEe---cCceEEeccccccccCCCCeEEecCCChH------HHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 356788886 5789988888764333 3788999875 5778888888763 34556666543
No 207
>PLN00197 beta-amylase; Provisional
Probab=30.73 E-value=2.9e+02 Score=31.74 Aligned_cols=95 Identities=21% Similarity=0.353 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhCCcEEEE------ec--CCc--chHHHHHHHHHHHHcCCCeeEe----------------eecccccc-
Q 009394 223 TSKIVDSIQDRGINQVYV------LG--GDG--TQKGASAIFEEIRRRGLKVAVA----------------GIPKTIDN- 275 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~Lvv------IG--Gdg--S~~~A~~L~~~~~~~g~~i~Vv----------------gIPkTIDN- 275 (535)
++.=+..|+..|++++.+ += |.+ -..+=..|++.+++.|+++.+| -+|+-+-+
T Consensus 129 l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~ 208 (573)
T PLN00197 129 MKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKWVVEE 208 (573)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 556677888889998864 22 222 2345567888888888877665 37777543
Q ss_pred -----CccCCCc---------ccCch--------hHHHHHHHHHHHHHhhhhcC-cceEEEEEec
Q 009394 276 -----DIPIIDK---------SFGFD--------TAVEEAQRAISAAHVEAESF-ENGIGVVKLM 317 (535)
Q Consensus 276 -----DI~gtD~---------S~GFd--------TAv~~~~~ai~~i~~~A~S~-~~rv~iVEvM 317 (535)
||..||. |+|.| |+++...+.+...+++-... ..-|.=|++=
T Consensus 209 g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VG 273 (573)
T PLN00197 209 VDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLGDTIVEIQVG 273 (573)
T ss_pred hccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhcCceeEEEec
Confidence 8988885 88988 55999999999888876553 3335555553
No 208
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=30.63 E-value=4.7e+02 Score=26.09 Aligned_cols=104 Identities=18% Similarity=0.306 Sum_probs=58.0
Q ss_pred EccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCC----------
Q 009394 151 VTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGG---------- 220 (535)
Q Consensus 151 vtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~---------- 220 (535)
+.||+ +-|+..+..... .. .++..|.-+-.|..-.+.. -+++..+.|...||.+| |..+
T Consensus 77 IVSG~-A~GiD~~ah~~a---l~-~~g~tIaVl~~gld~~yp~----~n~~l~~~i~~~gglli--Se~p~~~~~~~~~f 145 (220)
T TIGR00732 77 IVSGL-ALGIDGIAHKAA---LK-VNGRTIAVLGTGLDQIYPR----QNSKLAAKIAENGGLLL--SEYPPDTKPIKYNF 145 (220)
T ss_pred EEcCc-hhhHHHHHHHHH---HH-cCCCEEEEECCCCccCCch----hhHHHHHHHHHcCCEEE--EecCCCCCCCcccH
Confidence 34444 556665443322 22 3455555555665433322 24455666777788766 2221
Q ss_pred CcHHHHHHHHHHhCCcEEEEecC---CcchHHHHHHHHHHHHcCCCeeEeeecccccc
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGG---DGTQKGASAIFEEIRRRGLKVAVAGIPKTIDN 275 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGG---dgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDN 275 (535)
..+.+++..| =+++|+++. .||+.+|..- .+.| -+|..+|..|++
T Consensus 146 ~~RNriia~l----s~~vivve~~~~sGtl~ta~~A----~~~g--r~v~~~pg~~~~ 193 (220)
T TIGR00732 146 PKRNRIISGL----SRAVLVVEAPLKSGALITARYA----LEQG--REVFAYPGDLNS 193 (220)
T ss_pred HHHHHHHHHh----cCEEEEEECCCCCchHHHHHHH----HHhC--CcEEEEcCCCCC
Confidence 1245565555 478899987 4777665543 3345 458999998885
No 209
>PLN02204 diacylglycerol kinase
Probab=30.52 E-value=63 Score=37.26 Aligned_cols=70 Identities=24% Similarity=0.279 Sum_probs=42.9
Q ss_pred eEEEEEccccccccCCCeeeCCHhHHhchhcccC---cceeccCCCCcHHHHHHHH---HHhCCcEEEEecCCcchHHHH
Q 009394 178 HKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGG---TILGTSRGGHDTSKIVDSI---QDRGINQVYVLGGDGTQKGAS 251 (535)
Q Consensus 178 ~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GG---s~LGTsR~~~d~~ki~~~l---~~~~Id~LvvIGGdgS~~~A~ 251 (535)
.+++.|.|=+.|=- .- .-.|+.|..+....| .++-|.|.++-.+ +++.+ ...+.|++|++||||++..+.
T Consensus 160 k~llVivNP~sGkg--~~-~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d-~~~~~~~~~l~~~D~VVaVGGDGt~nEVl 235 (601)
T PLN02204 160 KNLLVFVHPLSGKG--SG-SRTWETVSPIFIRAKVKTKVIVTERAGHAFD-VMASISNKELKSYDGVIAVGGDGFFNEIL 235 (601)
T ss_pred ceEEEEECCCCCCc--ch-HHHHHHHHHHHHHcCCeEEEEEecCcchHHH-HHHHHhhhhccCCCEEEEEcCccHHHHHH
Confidence 46777777666632 21 123666777666655 2556666644333 33332 356789999999999986543
No 210
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=30.34 E-value=76 Score=33.14 Aligned_cols=51 Identities=12% Similarity=0.287 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTID 274 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID 274 (535)
++++.+..|.+ .+|.++||||..|-. ..+|++-+++.+.+.-.|-=|.=|+
T Consensus 198 ~RQ~a~~~La~-~vD~miVIGg~~SsN-T~kL~eia~~~~~~t~~Ie~~~el~ 248 (281)
T PF02401_consen 198 NRQEAARELAK-EVDAMIVIGGKNSSN-TRKLAEIAKEHGKPTYHIETADELD 248 (281)
T ss_dssp HHHHHHHHHHC-CSSEEEEES-TT-HH-HHHHHHHHHHCTTCEEEESSGGG--
T ss_pred HHHHHHHHHHh-hCCEEEEecCCCCcc-HHHHHHHHHHhCCCEEEeCCccccC
Confidence 35667777755 699999999999954 5778898888776544444444333
No 211
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=30.18 E-value=3.6e+02 Score=29.41 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=57.6
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTS 224 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 224 (535)
+.|||||||- ..+|+.++++.+ ..+++..+++-+.==+ +|= .-..
T Consensus 135 p~~I~viTs~-~gAa~~D~~~~~----~~r~p~~~~~~~~~~v---------------------QG~---------~A~~ 179 (438)
T PRK00286 135 PKRIGVITSP-TGAAIRDILTVL----RRRFPLVEVIIYPTLV---------------------QGE---------GAAA 179 (438)
T ss_pred CCEEEEEeCC-ccHHHHHHHHHH----HhcCCCCeEEEecCcC---------------------cCc---------cHHH
Confidence 5699999973 344555555554 4445544554332111 111 1123
Q ss_pred HHHHHHH---HhCCcEEEEecCCcchHHHHHH-----HHHHHHcCCCeeEe-eeccccccCcc--CCCcccCchhHHHH
Q 009394 225 KIVDSIQ---DRGINQVYVLGGDGTQKGASAI-----FEEIRRRGLKVAVA-GIPKTIDNDIP--IIDKSFGFDTAVEE 292 (535)
Q Consensus 225 ki~~~l~---~~~Id~LvvIGGdgS~~~A~~L-----~~~~~~~g~~i~Vv-gIPkTIDNDI~--gtD~S~GFdTAv~~ 292 (535)
.|++.|+ +.++|.++++=|-||...-..+ ++.+. ..++||| ||=--+|.=|. --|...-=.||+-+
T Consensus 180 ~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~--~~~~Pvis~IGHE~D~tl~D~vAd~ra~TPtaaae 256 (438)
T PRK00286 180 SIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIA--ASRIPVISAVGHETDFTIADFVADLRAPTPTAAAE 256 (438)
T ss_pred HHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHH--cCCCCEEEeccCCCCccHHHHhhhccCCChHHHHH
Confidence 4444443 3346999999999998764333 33332 3455554 55555554431 23444444555443
No 212
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=29.99 E-value=4.2e+02 Score=25.32 Aligned_cols=62 Identities=26% Similarity=0.488 Sum_probs=38.6
Q ss_pred hhcccCcceeccCC---CCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeec
Q 009394 206 IHKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIP 270 (535)
Q Consensus 206 i~~~GGs~LGTsR~---~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 270 (535)
+...|+.+.+.... ..+....+..|++.+.+.+++.+..+. +..+.+.+++.|+++++++..
T Consensus 159 ~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---~~~~~~~~~~~g~~~~~~~~~ 223 (298)
T cd06268 159 LKKLGGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAGYGGD---AALFLKQAREAGLKVPIVGGD 223 (298)
T ss_pred HHHcCCEEEEEeccCCCCccHHHHHHHHHhcCCCEEEEccccch---HHHHHHHHHHcCCCCcEEecC
Confidence 34455555444332 246778888888888898887765432 344556677778776666543
No 213
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=29.89 E-value=1.7e+02 Score=22.94 Aligned_cols=51 Identities=18% Similarity=0.449 Sum_probs=38.7
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeecccc
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTI 273 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 273 (535)
...+++++..++.|++++.+- --+++.+...+.+.+++.|+++ ++|+-.++
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iT-Dh~~~~~~~~~~~~~~~~gi~~-i~G~E~~~ 65 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAIT-DHGNLFGAVEFYKAAKKAGIKP-IIGLEANI 65 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEe-eCCcccCHHHHHHHHHHcCCeE-EEEEEEEe
Confidence 357899999999999987655 4447888888888888888763 66665544
No 214
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=29.77 E-value=57 Score=31.30 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=29.8
Q ss_pred HHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH
Q 009394 228 DSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV 290 (535)
Q Consensus 228 ~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv 290 (535)
+.+++++.|+||+-||-++-.........++....++||.|| |+|+..-.
T Consensus 37 ~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGI-------------C~G~Qlla 86 (191)
T PRK06774 37 TDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGV-------------CLGHQALG 86 (191)
T ss_pred HHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEE-------------CHHHHHHH
Confidence 345677899999999999864332211112111224556665 88887543
No 215
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=29.75 E-value=1e+02 Score=30.10 Aligned_cols=53 Identities=13% Similarity=0.350 Sum_probs=37.3
Q ss_pred ccCcceeccCC-CCcHHHHHHHHHH-hCCcEEEEecCCcc-hHHHHHHHHHHHHcCC
Q 009394 209 RGGTILGTSRG-GHDTSKIVDSIQD-RGINQVYVLGGDGT-QKGASAIFEEIRRRGL 262 (535)
Q Consensus 209 ~GGs~LGTsR~-~~d~~ki~~~l~~-~~Id~LvvIGGdgS-~~~A~~L~~~~~~~g~ 262 (535)
.|-.+.|++++ ....+|++.++-. -+|..|++.|-+-. +.+.+.|. .+.+.|+
T Consensus 40 ~gaAI~G~~~TENlGIEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl~-aLh~NGi 95 (176)
T PF04208_consen 40 AGAAIAGPCKTENLGIEKVIANVISNPNIRFLILCGSEVKGHLTGQSLL-ALHENGI 95 (176)
T ss_pred cCceeeecccccccCHHHHHHHHhcCCCceEEEEecCccCCCcchHHHH-HHHHcCC
Confidence 45589999998 4679999888754 59999999887753 44444442 3445675
No 216
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=29.66 E-value=38 Score=36.26 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=42.4
Q ss_pred eeCCHhHHhchhcccCcceeccCCC----Cc-HHHHHHHHHHhCC-----------------cEEEEecCCcchHHHHH-
Q 009394 196 IPLTPKIVNGIHKRGGTILGTSRGG----HD-TSKIVDSIQDRGI-----------------NQVYVLGGDGTQKGASA- 252 (535)
Q Consensus 196 ~~L~~~~V~~i~~~GGs~LGTsR~~----~d-~~ki~~~l~~~~I-----------------d~LvvIGGdgS~~~A~~- 252 (535)
-.|+++.+..+...-||-.|---.. .+ ...+++.|.+-+| |.+|-.||||||--|.-
T Consensus 45 ~~lspdql~q~L~srgtdv~~ll~~hKvhkn~~~~~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTfL~Aasr 124 (395)
T KOG4180|consen 45 SGLSPDQLLQYLESRGTDVGRLLSKHKVHKNAIKFCQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTFLLAASR 124 (395)
T ss_pred cCCCHHHHHHHHHhcCchHHHHHHHhHHHHHHHHHHHHHHhhCCcceeeeehhhccCcCchhhEEEEecCccceeehhhh
Confidence 4678888877766666544321111 11 3456667776665 78999999999865442
Q ss_pred HHHHHHHcCCCeeEeee
Q 009394 253 IFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 253 L~~~~~~~g~~i~VvgI 269 (535)
+.+ -..|||||
T Consensus 125 v~~------~~~PViGv 135 (395)
T KOG4180|consen 125 VID------DSKPVIGV 135 (395)
T ss_pred hhc------cCCceeee
Confidence 332 24678886
No 217
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=29.62 E-value=6.7e+02 Score=26.23 Aligned_cols=180 Identities=11% Similarity=0.013 Sum_probs=90.0
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCC-Cc
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGG-HD 222 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~d 222 (535)
...+|+++.....-|=.+.+..++-+.+.. ++ .++.- . +.+... ..
T Consensus 22 ~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~-~G-~~v~~--~-----------------------------~~~~~d~~~ 68 (336)
T PRK15408 22 AAERIAFIPKLVGVGFFTSGGNGAKEAGKE-LG-VDVTY--D-----------------------------GPTEPSVSG 68 (336)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHHHHHH-hC-CEEEE--E-----------------------------CCCCCCHHH
Confidence 345899999888889999999888877753 33 23320 0 111111 11
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCC--CcccCchhHHHHHHHHHHHH
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPII--DKSFGFDTAVEEAQRAISAA 300 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gt--D~S~GFdTAv~~~~~ai~~i 300 (535)
...+++.+...++|++++..-+... .....+.+.+.| |+||. +|.|++.. ...+|.++.-.....+.+.+
T Consensus 69 q~~~i~~li~~~vdgIiv~~~d~~a--l~~~l~~a~~~g--IpVV~----~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l 140 (336)
T PRK15408 69 QVQLINNFVNQGYNAIIVSAVSPDG--LCPALKRAMQRG--VKVLT----WDSDTKPECRSYYINQGTPEQLGSMLVEMA 140 (336)
T ss_pred HHHHHHHHHHcCCCEEEEecCCHHH--HHHHHHHHHHCC--CeEEE----eCCCCCCccceEEEecCCHHHHHHHHHHHH
Confidence 2367888999999999998655331 122334455556 55664 66665432 23345443322222222222
Q ss_pred HhhhhcCcceEEEEEe-cC--CCccHHH-HHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhCC
Q 009394 301 HVEAESFENGIGVVKL-MG--RYSGFIA-MYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENG 365 (535)
Q Consensus 301 ~~~A~S~~~rv~iVEv-MG--R~sG~LA-l~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~~ 365 (535)
.......+.+|.++.- ++ .+-.|.. ....++...+++-+++... .-+....-.+.+++-|+++.
T Consensus 141 ~~~l~~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~-~~~d~~~a~~~~~~lL~~~p 208 (336)
T PRK15408 141 AKQVGKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQF-GYNDATKSLQTAEGILKAYP 208 (336)
T ss_pred HHhcCCCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecC-CCCcHHHHHHHHHHHHHHCC
Confidence 2222212345666642 22 1123332 2224433256666664332 21112233344555555543
No 218
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=29.55 E-value=6.4e+02 Score=27.43 Aligned_cols=154 Identities=18% Similarity=0.201 Sum_probs=86.0
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHH---HHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHH
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKG---ASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAA 300 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~---A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 300 (535)
+.|.+..++++-+.++|+.+--+-.- ...+.++++++ +.++||.+.. +...+.+++-||+.|++.+.+.+..-
T Consensus 79 ~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi~~v~~~~~~~-~~~pvi~v~t---~gf~g~~~~~G~~~a~~al~~~~~~~ 154 (426)
T cd01972 79 DTIKEAYSRYKPKAIFVATSCATGIIGDDVESVVEELEDE-IGIPVVALHC---EGFKGKHWRSGFDAAFHGILRHLVPP 154 (426)
T ss_pred HHHHHHHHhCCCCEEEEECCChHHHhccCHHHHHHHHHHh-hCCCEEEEeC---CccCCccHhHHHHHHHHHHHHHhcCC
Confidence 34555666789999999886544222 11233444322 3455666552 23444467789999888776543210
Q ss_pred HhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCC-CCCCcchHHHHHHHHHHhCCcEEEEEecC-CCch
Q 009394 301 HVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPF-YLEGPGGLFEYIEKRLKENGHMVIVIAEG-AGQE 378 (535)
Q Consensus 301 ~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf-~l~~~~~l~e~I~~rl~~~~~~vIVVaEG-a~~~ 378 (535)
.+... . ...+-+|++.+. +.. ..+.+..|++-+++-|..++.+--| ..-+
T Consensus 155 -~~~~~-------------------------~-~~~VNliG~~~~~~~~-~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ 206 (426)
T cd01972 155 -QDPTK-------------------------Q-EDSVNIIGLWGGPERT-EQEDVDEFKRLLNELGLRVNAIIAGGCSVE 206 (426)
T ss_pred -CCCCC-------------------------C-CCCEEEEccCCCcccc-ccccHHHHHHHHHHcCCeEEEEeCCCCCHH
Confidence 00000 0 123456666643 221 1245667888888778777655544 5422
Q ss_pred hhHHHhhhcccccccCCccch-hhHHHHHHHHHHHhCC
Q 009394 379 LLSEIMHTMDQQDASGNKLLQ-DVGLWISQKIRDHFGK 415 (535)
Q Consensus 379 ~~~~~~~~~~~~Da~Gn~~l~-~ig~~L~~~I~~~~~~ 415 (535)
-+. ...++.-|+.+. ..|..+++.++++++.
T Consensus 207 ei~------~~~~A~lniv~~~~~g~~~a~~Lee~~Gi 238 (426)
T cd01972 207 ELE------RASEAAANVTLCLDLGYYLGAALEQRFGV 238 (426)
T ss_pred HHH------hcccCCEEEEEChhHHHHHHHHHHHHhCC
Confidence 221 124566677665 4678899999988874
No 219
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=29.45 E-value=3.4e+02 Score=27.29 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=57.5
Q ss_pred CchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHh-chhcccCcceeccCC---CCcHHHHHHHHHHh
Q 009394 158 PGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVN-GIHKRGGTILGTSRG---GHDTSKIVDSIQDR 233 (535)
Q Consensus 158 pGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~-~i~~~GGs~LGTsR~---~~d~~ki~~~l~~~ 233 (535)
|.-....+.++..+...++..+|..+..... +... ....+. .+...|.++.++... ..++...+..+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~--~g~~----~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~ 189 (334)
T cd06342 116 ARDDQQGPAAAKYAVETLKAKKVAIIDDKTA--YGQG----LADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAA 189 (334)
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEEEeCCcc--hhhH----HHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhc
Confidence 3344555666655544455556555432211 1001 111222 233457777766554 35788999999999
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEee
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAG 268 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~Vvg 268 (535)
+.+.+++.| .+. .+..+.+.+++.|+..++++
T Consensus 190 ~~~~vi~~~-~~~--~~~~~~~~~~~~g~~~~~~~ 221 (334)
T cd06342 190 NPDAVFFGG-YYP--EAGPLVRQMRQLGLKAPFMG 221 (334)
T ss_pred CCCEEEEcC-cch--hHHHHHHHHHHcCCCCcEEe
Confidence 999887655 332 23446677777888765554
No 220
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=29.38 E-value=5.2e+02 Score=24.84 Aligned_cols=25 Identities=4% Similarity=0.183 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGT 246 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS 246 (535)
...+.++.|.++++|++++.+.+..
T Consensus 43 ~~~~~i~~l~~~~vdgiii~~~~~~ 67 (269)
T cd06275 43 RQRSYLRMLAQKRVDGLLVMCSEYD 67 (269)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCC
Confidence 3457788899999999999997755
No 221
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=29.05 E-value=6.1e+02 Score=25.54 Aligned_cols=136 Identities=13% Similarity=0.113 Sum_probs=69.1
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHH
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSK 225 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~k 225 (535)
..||++...-.-|-.+.++.++.+.+.. ++ ..++-. -+........+
T Consensus 61 ~~Igvi~~~~~~~~~~~~~~~i~~~~~~-~g-y~~~i~-------------------------------~~~~~~~~~~~ 107 (327)
T TIGR02417 61 RTIGLVIPDLENYSYARIAKELEQQCRE-AG-YQLLIA-------------------------------CSDDNPDQEKV 107 (327)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCCHHHHHH
Confidence 4899988655567777777777776643 22 222210 00011122346
Q ss_pred HHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC-cccCchhHHHHHHHHHHHHHhhh
Q 009394 226 IVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID-KSFGFDTAVEEAQRAISAAHVEA 304 (535)
Q Consensus 226 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD-~S~GFdTAv~~~~~ai~~i~~~A 304 (535)
.++.|..+++|++++.+.+.... ...+.+.+.+ +|||.+ |.+.+..+ .+++.|-.- .+..+++.+..
T Consensus 108 ~~~~l~~~~vdgiIi~~~~~~~~---~~~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~dn~~-~~~~~~~~L~~-- 175 (327)
T TIGR02417 108 VIENLLARQVDALIVASCMPPED---AYYQKLQNEG--LPVVAL----DRSLDDEHFCSVISDDVD-AAAELIERLLS-- 175 (327)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCh---HHHHHHHhcC--CCEEEE----ccccCCCCCCEEEeCcHH-HHHHHHHHHHH--
Confidence 77888899999999988654221 2223444445 445543 33332221 234444321 12233333322
Q ss_pred hcCcceEEEEEe-c------CCCccHHHHH
Q 009394 305 ESFENGIGVVKL-M------GRYSGFIAMY 327 (535)
Q Consensus 305 ~S~~~rv~iVEv-M------GR~sG~LAl~ 327 (535)
.. +++|.++-- . -|..||....
T Consensus 176 ~G-~~~I~~i~~~~~~~~~~~R~~Gf~~al 204 (327)
T TIGR02417 176 QH-ADEFWYLGAQPELSVSRDRLAGFRQAL 204 (327)
T ss_pred CC-CCeEEEEeCcccchhHHHHHHHHHHHH
Confidence 23 456777741 1 1556666544
No 222
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=28.79 E-value=5.2e+02 Score=27.66 Aligned_cols=136 Identities=12% Similarity=0.167 Sum_probs=71.2
Q ss_pred cHHHHHHHHHHh-CCcEEEEecCCcchHHHHHHHHHHHHcCCC--eeEeeeccccccCccCCCcccCchhHHHHHHH--H
Q 009394 222 DTSKIVDSIQDR-GINQVYVLGGDGTQKGASAIFEEIRRRGLK--VAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQR--A 296 (535)
Q Consensus 222 d~~ki~~~l~~~-~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~--i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~--a 296 (535)
.++++++.|.++ ++++ +||+|-|-.+ ..+++++.++... ..++ ++ |.|-|...+++++.+ .
T Consensus 182 Ff~~v~~~l~~~~~v~~-iIiaGPGf~k--~~f~~~l~~~~~~~~~k~i-----i~------~~s~g~~~gl~EvL~~~~ 247 (351)
T TIGR00111 182 FYKEIAKKLLNFDDLKT-IIVAGPGFYK--NDFYDFIFERYPEEANKAV-----LE------NCSTGGRAGINEVLKRGL 247 (351)
T ss_pred HHHHHHHHHhhhcccCE-EEEECCHHHH--HHHHHHHHHHhhhhhCCcE-----EE------ecCCCchhHHHHHHhChH
Confidence 467888888877 6776 4566666554 4455555433211 1111 11 245577777777655 3
Q ss_pred HHHHHhhhhcCcceEE----EEEecCCC----c-cHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhCCcE
Q 009394 297 ISAAHVEAESFENGIG----VVKLMGRY----S-GFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHM 367 (535)
Q Consensus 297 i~~i~~~A~S~~~rv~----iVEvMGR~----s-G~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~~~~ 367 (535)
+..+..+....+. .- |.+.+..+ | |.=-..-|+..|.++..||-+.-|.-. .-++.+.+..++.|.-
T Consensus 248 v~~~l~d~k~~~E-~~~l~~f~~~l~kd~~~~~YG~~eV~~Ale~GAVetLLIsD~l~~~r---~~~~~l~~~v~~~gg~ 323 (351)
T TIGR00111 248 VARILQETRYAKE-IMVIDEFLEHLAKDGDKAVYGEDEVVKAAEYGAIEYLLVTDKVLVQR---EEIEKLLDSVESMGGK 323 (351)
T ss_pred HHHHHhhhhHHHH-HHHHHHHHHHHhcCCCeEEECHHHHHHHHHcCCceEEEEecchhhhH---HHHHHHHHHHHHcCCE
Confidence 3333332221110 00 11112211 1 444455666666678999988876321 2244455555666777
Q ss_pred EEEEecCC
Q 009394 368 VIVIAEGA 375 (535)
Q Consensus 368 vIVVaEGa 375 (535)
|++++..-
T Consensus 324 V~i~Ss~~ 331 (351)
T TIGR00111 324 VVILSTEH 331 (351)
T ss_pred EEEEcCCC
Confidence 88877653
No 223
>PLN02335 anthranilate synthase
Probab=28.77 E-value=78 Score=31.55 Aligned_cols=46 Identities=17% Similarity=0.367 Sum_probs=31.2
Q ss_pred HHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchh
Q 009394 230 IQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDT 288 (535)
Q Consensus 230 l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdT 288 (535)
+..++.++||+-||-|+-.......+.+++.+-.+||.|| |+||.-
T Consensus 58 ~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGI-------------ClG~Ql 103 (222)
T PLN02335 58 LKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGV-------------CMGLQC 103 (222)
T ss_pred HHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEe-------------cHHHHH
Confidence 4567899999999999876543333444444444666665 999983
No 224
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=28.32 E-value=7.1e+02 Score=27.50 Aligned_cols=102 Identities=23% Similarity=0.300 Sum_probs=59.7
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee-ccccccCccCCCcccCc--hhHHHHHHHHH
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI-PKTIDNDIPIIDKSFGF--DTAVEEAQRAI 297 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI-PkTIDNDI~gtD~S~GF--dTAv~~~~~ai 297 (535)
....++++.+++.-=+.+++.|+-.|...|..+.+ .|.+.-.+|+ |.||.---..+ .+|. -||+..+.+++
T Consensus 179 ~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~----aGaD~I~vG~g~Gs~c~tr~~~--g~g~p~ltai~~v~~~~ 252 (404)
T PRK06843 179 TRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS----VGADCLKVGIGPGSICTTRIVA--GVGVPQITAICDVYEVC 252 (404)
T ss_pred hhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH----cCCCEEEECCCCCcCCcceeec--CCCCChHHHHHHHHHHH
Confidence 45667777887753467788999999998887765 3777655675 66653221111 1233 34555555543
Q ss_pred HHHHhhhhcCcceEEEEEecC--CCccHHHHHHhHhcCCccEEecC
Q 009394 298 SAAHVEAESFENGIGVVKLMG--RYSGFIAMYATIASRDVDCCLIP 341 (535)
Q Consensus 298 ~~i~~~A~S~~~rv~iVEvMG--R~sG~LAl~aaLAs~~ad~ilIP 341 (535)
+.. .+-|| ..| |+.|.++ -||+. |||.|.+-
T Consensus 253 ~~~---------~vpVI-AdGGI~~~~Di~--KALal-GA~aVmvG 285 (404)
T PRK06843 253 KNT---------NICII-ADGGIRFSGDVV--KAIAA-GADSVMIG 285 (404)
T ss_pred hhc---------CCeEE-EeCCCCCHHHHH--HHHHc-CCCEEEEc
Confidence 311 13333 455 4667776 44555 68877764
No 225
>PLN02803 beta-amylase
Probab=28.00 E-value=3.5e+02 Score=31.03 Aligned_cols=95 Identities=18% Similarity=0.319 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhCCcEEEE------ec--CCcc--hHHHHHHHHHHHHcCCCeeEe----------------eeccccc--
Q 009394 223 TSKIVDSIQDRGINQVYV------LG--GDGT--QKGASAIFEEIRRRGLKVAVA----------------GIPKTID-- 274 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~Lvv------IG--GdgS--~~~A~~L~~~~~~~g~~i~Vv----------------gIPkTID-- 274 (535)
++.=+..|+..|++++.+ += |.+- ..+-.+|++.+++.|+++.+| -+|+-+-
T Consensus 109 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~e~ 188 (548)
T PLN02803 109 MNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEE 188 (548)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 556677888899999864 22 2222 445567888888888877665 3777654
Q ss_pred ----cCccCCCc---------ccCch--------hHHHHHHHHHHHHHhhhhcCc-ceEEEEEec
Q 009394 275 ----NDIPIIDK---------SFGFD--------TAVEEAQRAISAAHVEAESFE-NGIGVVKLM 317 (535)
Q Consensus 275 ----NDI~gtD~---------S~GFd--------TAv~~~~~ai~~i~~~A~S~~-~rv~iVEvM 317 (535)
.||..||. |+|.| |+++...+.....+++-...- .-|.=|++=
T Consensus 189 ~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~I~eI~VG 253 (548)
T PLN02803 189 MSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLGGVIAEIQVG 253 (548)
T ss_pred hhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhcCceEEEEec
Confidence 38988885 88888 789999999988887755533 234445553
No 226
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=27.96 E-value=4e+02 Score=28.89 Aligned_cols=104 Identities=16% Similarity=0.140 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee-ccccccCccCCCcccCchhHHHHHHHHHHHHH
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI-PKTIDNDIPIIDKSFGFDTAVEEAQRAISAAH 301 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI-PkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~ 301 (535)
.-.+++.+++.--+..+|.|.-.|..+|..|.+ .|.+.--||| |.+|.-==.-+-.-.+--||+..++++...
T Consensus 138 ~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~----aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~-- 211 (346)
T PRK05096 138 FVQFVAKAREAWPDKTICAGNVVTGEMVEELIL----SGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHG-- 211 (346)
T ss_pred HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHH----cCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHH--
Confidence 456677777765565666666788888877765 3766555666 776653222121122345666555554432
Q ss_pred hhhhcCcceEEEEEecC-CCccHHHHHHhHhcCCccEEecCC
Q 009394 302 VEAESFENGIGVVKLMG-RYSGFIAMYATIASRDVDCCLIPE 342 (535)
Q Consensus 302 ~~A~S~~~rv~iVEvMG-R~sG~LAl~aaLAs~~ad~ilIPE 342 (535)
.++-||===| |++|+++-+ ||. +||.|.+-.
T Consensus 212 -------~gvpiIADGGi~~sGDI~KA--laa-GAd~VMlGs 243 (346)
T PRK05096 212 -------LGGQIVSDGGCTVPGDVAKA--FGG-GADFVMLGG 243 (346)
T ss_pred -------cCCCEEecCCcccccHHHHH--HHc-CCCEEEeCh
Confidence 2334443222 789999864 445 689888753
No 227
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=27.95 E-value=6.4e+02 Score=25.42 Aligned_cols=43 Identities=16% Similarity=0.389 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
..++++.+...++|++++.+-+... .....+++.+.+ ++||.+
T Consensus 43 q~~~i~~l~~~~vDgIIi~~~~~~~--~~~~l~~~~~~~--iPvV~~ 85 (302)
T TIGR02634 43 QISQIENLIARGVDVLVIIPQNGQV--LSNAVQEAKDEG--IKVVAY 85 (302)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhH--HHHHHHHHHHCC--CeEEEe
Confidence 4578999999999999998765432 123334555555 567754
No 228
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=27.86 E-value=1.9e+02 Score=32.64 Aligned_cols=88 Identities=24% Similarity=0.268 Sum_probs=54.8
Q ss_pred CchhHHHHHHHHHHHHHhhh---------hcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHH
Q 009394 285 GFDTAVEEAQRAISAAHVEA---------ESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFE 355 (535)
Q Consensus 285 GFdTAv~~~~~ai~~i~~~A---------~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e 355 (535)
|-.|++++.++..+--+++| .||-+-|-|-.+-|+.-.-+|+ |-||.+++|++++-|-.-++|- +-++
T Consensus 665 ~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVal-aeLal~~PDvlILDEPTNNLDI--ESID 741 (807)
T KOG0066|consen 665 GEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVAL-AELALGGPDVLILDEPTNNLDI--ESID 741 (807)
T ss_pred cccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHH-HHHhcCCCCEEEecCCCCCcch--hhHH
Confidence 45677777765443323332 2444568888888887777764 4566668999888776544442 2344
Q ss_pred HHHHHHHhCCcEEEEEecCC
Q 009394 356 YIEKRLKENGHMVIVIAEGA 375 (535)
Q Consensus 356 ~I~~rl~~~~~~vIVVaEGa 375 (535)
.+.+-+.+-+.+||+|+--.
T Consensus 742 ALaEAIney~GgVi~VsHDe 761 (807)
T KOG0066|consen 742 ALAEAINEYNGGVIMVSHDE 761 (807)
T ss_pred HHHHHHHhccCcEEEEeccc
Confidence 45555556566788887653
No 229
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=27.80 E-value=4.1e+02 Score=27.32 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=42.7
Q ss_pred chhcccCcceeccCC---CCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEee
Q 009394 205 GIHKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAG 268 (535)
Q Consensus 205 ~i~~~GGs~LGTsR~---~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~Vvg 268 (535)
.+...|+++..+.+. ..|+...+..|++.+-+.+++.+.... +..+.+.+++.|+++++++
T Consensus 161 ~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~~---~~~~~~~~~~~g~~~~~~~ 224 (347)
T cd06335 161 ALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGPE---GAQIANGMAKLGWKVPIIS 224 (347)
T ss_pred HHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecChH---HHHHHHHHHHcCCCCcEec
Confidence 344567777766554 357888999999999999988874332 3346677777888766554
No 230
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=27.74 E-value=1.6e+02 Score=31.15 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccC-ccCC---CcccCchhHHHHHHHHH
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDND-IPII---DKSFGFDTAVEEAQRAI 297 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND-I~gt---D~S~GFdTAv~~~~~ai 297 (535)
++++.+..|-+ ..|.++||||..|-.+ .+|++-+++.+.+.-.|-=+.=|+-+ +.+. --|=|-.|=-..+.+.+
T Consensus 199 ~RQ~a~~~La~-~vD~miVVGg~~SsNT-~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~ 276 (298)
T PRK01045 199 NRQEAVKELAP-QADLVIVVGSKNSSNS-NRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVI 276 (298)
T ss_pred HHHHHHHHHHh-hCCEEEEECCCCCccH-HHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHH
Confidence 45666666755 6999999999999765 56788888777665556556555532 2221 12445555444444444
Q ss_pred HHH
Q 009394 298 SAA 300 (535)
Q Consensus 298 ~~i 300 (535)
+.+
T Consensus 277 ~~l 279 (298)
T PRK01045 277 ARL 279 (298)
T ss_pred HHH
Confidence 444
No 231
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=27.74 E-value=1.2e+02 Score=31.18 Aligned_cols=59 Identities=25% Similarity=0.339 Sum_probs=39.6
Q ss_pred ceEEEEEecCCCccHHHHHHhHhcCCc---cEEecCCCCCCCCCcchHHHHHHHHHHhC--CcEEEEEecCCC
Q 009394 309 NGIGVVKLMGRYSGFIAMYATIASRDV---DCCLIPESPFYLEGPGGLFEYIEKRLKEN--GHMVIVIAEGAG 376 (535)
Q Consensus 309 ~rv~iVEvMGR~sG~LAl~aaLAs~~a---d~ilIPE~pf~l~~~~~l~e~I~~rl~~~--~~~vIVVaEGa~ 376 (535)
+++.++|+ ..||+...||+-.-.+ .++|+||.|- +-.+.|++++++. .+.-|+|+.-.+
T Consensus 90 ~~~~i~~~---~~G~v~anAGID~SNv~~g~~~LLP~DPd------~SA~~ir~~l~~~~g~~v~VIItDt~g 153 (245)
T PRK13293 90 APFILTET---KHGHVCANAGIDESNVPDGDLLLLPENPD------ESAERIREGLEELTGKKVGVIITDTNG 153 (245)
T ss_pred CCeEEEEe---ccceEEeccccccccCCCCeEEecCCCHH------HHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 45667776 6799988888764333 3789999874 5667788877653 345567776543
No 232
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=27.56 E-value=3.3e+02 Score=27.28 Aligned_cols=59 Identities=24% Similarity=0.350 Sum_probs=41.3
Q ss_pred hcccCcceeccCC---CCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEee
Q 009394 207 HKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAG 268 (535)
Q Consensus 207 ~~~GGs~LGTsR~---~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~Vvg 268 (535)
...|++++.+... ..++...+..+++.+.+.+++.+..+.+ ..+.+.+++.|+++++++
T Consensus 161 ~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~~~~---~~~~~~~~~~g~~~~i~~ 222 (334)
T cd06347 161 KKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGYYTEV---GLIAKQARELGIKVPILG 222 (334)
T ss_pred HHcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEEcCchhhH---HHHHHHHHHcCCCCcEEe
Confidence 3457777766443 3578888999999999998887655533 445567777788766654
No 233
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=27.49 E-value=60 Score=36.78 Aligned_cols=64 Identities=20% Similarity=0.369 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhC---CcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHH
Q 009394 223 TSKIVDSIQDRG---INQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEE 292 (535)
Q Consensus 223 ~~ki~~~l~~~~---Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~ 292 (535)
.+++++.+.+.+ .|.++-|||=-.++.|..++... .+| +++|.||-|. ++.+|-|+|.-|+++.
T Consensus 255 v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y-~rG--i~~i~vPTTl---lA~vDss~ggkt~in~ 321 (542)
T PRK14021 255 ANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATW-MRG--IRYVNCPTSL---LAMVDASTGGKTGINT 321 (542)
T ss_pred HHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHH-HcC--CCEEEeCChH---HhhhccccCCceEEEC
Confidence 456778888884 89999999988888877665422 346 6699999996 2556667776665543
No 234
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=27.07 E-value=3.5e+02 Score=28.35 Aligned_cols=60 Identities=18% Similarity=0.122 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHHh--CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC
Q 009394 221 HDTSKIVDSIQDR--GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID 281 (535)
Q Consensus 221 ~d~~ki~~~l~~~--~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD 281 (535)
.++.++++.+++. +.+++||+-|-+||.-...+...+- .+++.+||-.=.-.--+.+.+|
T Consensus 57 ~~~~~la~~i~~~~~~~~GvVVtHGTDTme~tA~~Ls~~l-~~l~kPVVlTGa~~P~~~~~sD 118 (313)
T PF00710_consen 57 EDWLELARAIQAALDDYDGVVVTHGTDTMEETAFFLSLLL-DNLDKPVVLTGAMRPLSAPGSD 118 (313)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEE--STTHHHHHHHHHHHE-ES-SSEEEEE--SS-TTSTT-S
T ss_pred HHHHHHHHHHHHHHHhcCeEEEecCchHHHHHHHHHHHHh-cCCCCCEEEeCCcCCCcCCCCc
Confidence 4454554444444 5999999999999987555544432 2445666654333333444445
No 235
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=27.03 E-value=3.3e+02 Score=28.63 Aligned_cols=62 Identities=24% Similarity=0.442 Sum_probs=43.9
Q ss_pred hchhcccCcceeccCC---CCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEee
Q 009394 204 NGIHKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAG 268 (535)
Q Consensus 204 ~~i~~~GGs~LGTsR~---~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~Vvg 268 (535)
..+...|+.+.+..+. ..|+...+..|++.+-|.+++ +|++. .. ..+.+.+++.|++.++++
T Consensus 183 ~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~-~~~~~-~~-~~~~k~~~~~G~~~~~i~ 247 (369)
T PRK15404 183 DGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYY-GGYHP-EM-GQILRQAREAGLKTQFMG 247 (369)
T ss_pred HHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEE-CCCch-HH-HHHHHHHHHCCCCCeEEe
Confidence 4466778888777654 468899999999999998765 44443 22 335577778888877664
No 236
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=26.90 E-value=93 Score=34.39 Aligned_cols=49 Identities=27% Similarity=0.447 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTID 274 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID 274 (535)
.++.++.+.-.. |.+||.|||||....- .--+++|+-.++|--+|.--|
T Consensus 106 ak~l~e~~~t~~-Dii~VaGGDGT~~eVV--TGi~Rrr~~~~pv~~~P~G~~ 154 (535)
T KOG4435|consen 106 AKALAEAVDTQE-DIIYVAGGDGTIGEVV--TGIFRRRKAQLPVGFYPGGYD 154 (535)
T ss_pred HHHHHHHhccCC-CeEEEecCCCcHHHhh--HHHHhcccccCceeeccCccc
Confidence 456666666655 9999999999986532 333445555556666665544
No 237
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=26.77 E-value=6e+02 Score=26.35 Aligned_cols=114 Identities=25% Similarity=0.194 Sum_probs=0.0
Q ss_pred ccccccCccCCCccc-Cchh-HHHHHHHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCcc-EEecCCCCCC
Q 009394 270 PKTIDNDIPIIDKSF-GFDT-AVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVD-CCLIPESPFY 346 (535)
Q Consensus 270 PkTIDNDI~gtD~S~-GFdT-Av~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad-~ilIPE~pf~ 346 (535)
|+|-..|..+.+.++ -||- |++++.+.-+. .+..=-++=+||-...-=++.-+||- |+| .++|.-..|.
T Consensus 21 ~~~~~~~~~gv~~~in~~D~~AvEeAlrLke~-------~~~~eV~vlt~Gp~~a~~~lr~aLAm-GaDraili~d~~~~ 92 (260)
T COG2086 21 PDTGTLDRSGVPLSINPFDLNAVEEALRLKEK-------GYGGEVTVLTMGPPQAEEALREALAM-GADRAILITDRAFA 92 (260)
T ss_pred cCCCccccCCCCcccChhhHHHHHHHHHhhcc-------CCCceEEEEEecchhhHHHHHHHHhc-CCCeEEEEeccccc
Q ss_pred CCCcchHHHHHHHHHHhCCcEEEEEecCCCchhhHHHhhhcccccccCCccchhhHHHHHHHH
Q 009394 347 LEGPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKI 409 (535)
Q Consensus 347 l~~~~~l~e~I~~rl~~~~~~vIVVaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I 409 (535)
-.........|.+.+++.+.-+|+..+.+.+.+. +.+|..|++++
T Consensus 93 ~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t------------------~qvg~~lAe~L 137 (260)
T COG2086 93 GADPLATAKALAAAVKKIGPDLVLTGKQAIDGDT------------------GQVGPLLAELL 137 (260)
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEecccccCCc------------------cchHHHHHHHh
No 238
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.56 E-value=5.9e+02 Score=24.53 Aligned_cols=82 Identities=11% Similarity=0.160 Sum_probs=47.0
Q ss_pred EEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceecc-CCCCcHHHH
Q 009394 148 ACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTS-RGGHDTSKI 226 (535)
Q Consensus 148 iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTs-R~~~d~~ki 226 (535)
|||+...=.-|-.+.++.++.+.+.. ++ .+++ +.++ .........
T Consensus 2 igvi~p~~~~~~~~~~~~gi~~~~~~-~~-~~~~--------------------------------~~~~~~~~~~~~~~ 47 (265)
T cd06285 2 IGVLVPRLTDTVMATMYEGIEEAAAE-RG-YSTF--------------------------------VANTGDNPDAQRRA 47 (265)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCCHHHHHHH
Confidence 56666544567778888888777653 32 1221 1111 111223467
Q ss_pred HHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 227 VDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 227 ~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
++.+...++|++++.+-+.... . .+++.+.++ |||.+
T Consensus 48 i~~l~~~~~dgiii~~~~~~~~---~-~~~~~~~~i--Pvv~~ 84 (265)
T cd06285 48 IEMLLDRRVDGLILGDARSDDH---F-LDELTRRGV--PFVLV 84 (265)
T ss_pred HHHHHHcCCCEEEEecCCCChH---H-HHHHHHcCC--CEEEE
Confidence 7888999999999987554432 2 344455564 45544
No 239
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=26.46 E-value=4.8e+02 Score=26.26 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=58.5
Q ss_pred CCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCe-eeCCHhHHhchhcccCcceeccCCC---CcHHHHHHHHHH
Q 009394 157 CPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNT-IPLTPKIVNGIHKRGGTILGTSRGG---HDTSKIVDSIQD 232 (535)
Q Consensus 157 apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~-~~L~~~~V~~i~~~GGs~LGTsR~~---~d~~ki~~~l~~ 232 (535)
+|.-....+.+++.+.. .+..++.-+..- ..+ ...-......+...|+.+....... .+....+..+++
T Consensus 117 ~~~~~~~~~~~~~~l~~-~g~~~v~~l~~~------~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~ 189 (336)
T cd06326 117 RASYADEIAAIVRHLVT-LGLKRIAVFYQD------DAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAA 189 (336)
T ss_pred CCChHHHHHHHHHHHHH-hCCceEEEEEec------CcchHHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHh
Confidence 34455566777776654 444455444221 111 0111112234556677766654432 467788888888
Q ss_pred hCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 233 RGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 233 ~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
.+.+++|+.+-.. .+..+.+.+++.|++++++++
T Consensus 190 ~~~dav~~~~~~~---~a~~~i~~~~~~G~~~~~~~~ 223 (336)
T cd06326 190 ARPQAVIMVGAYK---AAAAFIRALRKAGGGAQFYNL 223 (336)
T ss_pred cCCCEEEEEcCcH---HHHHHHHHHHhcCCCCcEEEE
Confidence 8899887766332 233455677788988777654
No 240
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=26.38 E-value=4.6e+02 Score=26.73 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCC
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGL 262 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~ 262 (535)
..+.+.+.++++++|.++. +-++.......+.+.+.+.|.
T Consensus 57 ~~~~l~~~~~~~~id~ii~-~~d~~~~~~a~~~~~l~~~g~ 96 (326)
T PRK12767 57 YIDRLLDICKKEKIDLLIP-LIDPELPLLAQNRDRFEEIGV 96 (326)
T ss_pred HHHHHHHHHHHhCCCEEEE-CCcHHHHHHHHHHHHHHHcCc
Confidence 4678888899999996654 445444444445555555553
No 241
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=26.35 E-value=1.2e+02 Score=27.50 Aligned_cols=44 Identities=18% Similarity=0.343 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeE
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAV 266 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~V 266 (535)
.+.+.+.+++++||.+++-=-.........+.+++++.++++.+
T Consensus 130 ~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 130 LDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-EEEE
T ss_pred HHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCEEEE
Confidence 67888889999999999998888888888889999887765443
No 242
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=26.05 E-value=89 Score=32.03 Aligned_cols=50 Identities=28% Similarity=0.492 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcch----------HHHHHHHHHHHHc--CCCeeEeeecc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQ----------KGASAIFEEIRRR--GLKVAVAGIPK 271 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~----------~~A~~L~~~~~~~--g~~i~VvgIPk 271 (535)
.++..+..+...||+.+++++||-.- ..|..|.+.+++. .+.|-+++.|-
T Consensus 74 ~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Pe 135 (272)
T TIGR00676 74 EIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPE 135 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 46777888899999999999999762 2356566666553 35555666554
No 243
>PLN02705 beta-amylase
Probab=25.67 E-value=4.2e+02 Score=30.99 Aligned_cols=101 Identities=23% Similarity=0.281 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCcEEEE------ec--CCcc--hHHHHHHHHHHHHcCCCeeEe----------------eecccccc-
Q 009394 223 TSKIVDSIQDRGINQVYV------LG--GDGT--QKGASAIFEEIRRRGLKVAVA----------------GIPKTIDN- 275 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~Lvv------IG--GdgS--~~~A~~L~~~~~~~g~~i~Vv----------------gIPkTIDN- 275 (535)
++.=+..|+..|++++.| += |.+- ..+-..|++.+++.||++.+| -||+-|-+
T Consensus 270 l~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~ 349 (681)
T PLN02705 270 VRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLPQWVLEI 349 (681)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccCCHHHHHh
Confidence 456677899999999964 22 3322 455677888899999887765 37877654
Q ss_pred -----CccCCCc---------ccCch--------hHHHHHHHHHHHHHhhhhcC--cceEEEEEecCCCccH
Q 009394 276 -----DIPIIDK---------SFGFD--------TAVEEAQRAISAAHVEAESF--ENGIGVVKLMGRYSGF 323 (535)
Q Consensus 276 -----DI~gtD~---------S~GFd--------TAv~~~~~ai~~i~~~A~S~--~~rv~iVEvMGR~sG~ 323 (535)
||..||. |+|.| |+++...+.+...+++-... ..-|.=|++=.+-||-
T Consensus 350 g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGP~GE 421 (681)
T PLN02705 350 GKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVEGLITAVEIGLGASGE 421 (681)
T ss_pred cccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCceeEEEeccCCCcc
Confidence 8888885 88888 67899999998888776553 1235666665544443
No 244
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=25.64 E-value=1.1e+02 Score=31.24 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKT 272 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkT 272 (535)
..++.++.+++.|++++++- |........+.+.++++|++.-.+.-|.|
T Consensus 103 G~e~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred hHHHHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 35788999999999999998 77788888888999999998766777777
No 245
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=25.53 E-value=56 Score=31.12 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=31.5
Q ss_pred ccCCCCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccc
Q 009394 216 TSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKT 272 (535)
Q Consensus 216 TsR~~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkT 272 (535)
--|..+.+.++++++++.+++.+|.+-|-...-. -.++-. ...||||+|-.
T Consensus 37 aHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lp-gvva~~-----t~~PVIgvP~~ 87 (150)
T PF00731_consen 37 AHRTPERLLEFVKEYEARGADVIIAVAGMSAALP-GVVASL-----TTLPVIGVPVS 87 (150)
T ss_dssp TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HH-HHHHHH-----SSS-EEEEEE-
T ss_pred ccCCHHHHHHHHHHhccCCCEEEEEECCCcccch-hhheec-----cCCCEEEeecC
Confidence 3456666778888888888888887766654432 223321 36789999954
No 246
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.39 E-value=6.5e+02 Score=24.78 Aligned_cols=66 Identities=9% Similarity=-0.016 Sum_probs=43.7
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHHH
Q 009394 147 HACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSKI 226 (535)
Q Consensus 147 ~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ki 226 (535)
+||++...-..|.....+.++...+.. ++ ..++-. -+........++
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-y~~~~~-------------------------------~~~~~~~~~~~~ 48 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKA-IG-WNLRIL-------------------------------DGRGSEAGQAAA 48 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHH-cC-cEEEEE-------------------------------CCCCCHHHHHHH
Confidence 688888777778888888888887753 22 222110 011112234578
Q ss_pred HHHHHHhCCcEEEEecCCc
Q 009394 227 VDSIQDRGINQVYVLGGDG 245 (535)
Q Consensus 227 ~~~l~~~~Id~LvvIGGdg 245 (535)
++.+..+++|++++.+.+.
T Consensus 49 i~~l~~~~vdgiil~~~~~ 67 (280)
T cd06315 49 LNQAIALKPDGIVLGGVDA 67 (280)
T ss_pred HHHHHHcCCCEEEEcCCCH
Confidence 8899999999999998653
No 247
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=25.26 E-value=5.4e+02 Score=27.30 Aligned_cols=176 Identities=20% Similarity=0.301 Sum_probs=75.6
Q ss_pred CCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCC-C
Q 009394 143 SDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGG-H 221 (535)
Q Consensus 143 ~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~ 221 (535)
++-+=+||-..||.-| ...+..+..+.+ .| ..|+ +|+.=+++++ + .+......-|.-|-=-|.+ .
T Consensus 33 ~~~liiGiA~~GG~lp---~~w~~~i~~Ai~-~G-l~Iv---sGLH~~L~dd-----p-el~~~A~~~g~~i~DvR~p~~ 98 (301)
T PF07755_consen 33 ADTLIIGIAPAGGRLP---PSWRPVILEAIE-AG-LDIV---SGLHDFLSDD-----P-ELAAAAKKNGVRIIDVRKPPK 98 (301)
T ss_dssp -SEEEE---STTHCCH---CCHHHHHHHHHH-TT--EEE---E-SSS-HCCH-----H-HHHCCHHCCT--EEETTS--S
T ss_pred CCEEEEecCcCCCcCC---HHHHHHHHHHHH-cC-CCEE---ecChhhhccC-----H-HHHHHHHHcCCeEeeccCCCc
Confidence 4556788888888876 344444443332 34 3444 2322222211 1 2222333334323222332 1
Q ss_pred cHHHHHH-HHHHhCCcEEEEecCCcc---hHHHHHHHHHHHHcCCCeeEeeeccc----cccCccCCCcccCchhHHHHH
Q 009394 222 DTSKIVD-SIQDRGINQVYVLGGDGT---QKGASAIFEEIRRRGLKVAVAGIPKT----IDNDIPIIDKSFGFDTAVEEA 293 (535)
Q Consensus 222 d~~ki~~-~l~~~~Id~LvvIGGdgS---~~~A~~L~~~~~~~g~~i~VvgIPkT----IDNDI~gtD~S~GFdTAv~~~ 293 (535)
+. .+.. ...+.+-.-+.++|=|-+ |+++..|.++++++|++..+++==-| -+..++ .| ++-.| ++
T Consensus 99 ~~-~~~~g~~~~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGimia~~Gv~-iD-av~~D----Fv 171 (301)
T PF07755_consen 99 DL-PVASGRIREVKAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGIMIAGYGVP-ID-AVPSD----FV 171 (301)
T ss_dssp S------SGGGG-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHHCHSEC---GG-GSBGG----GH
T ss_pred cc-ccccCccccCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceEEEecCCee-cc-chhhh----hH
Confidence 22 2211 122446677888888755 88899999999999888666642111 111111 11 23333 23
Q ss_pred HHHHHHHHhhhhcCcceEEEEEecCC--CccHHHHHHh-HhcCCccEEec
Q 009394 294 QRAISAAHVEAESFENGIGVVKLMGR--YSGFIAMYAT-IASRDVDCCLI 340 (535)
Q Consensus 294 ~~ai~~i~~~A~S~~~rv~iVEvMGR--~sG~LAl~aa-LAs~~ad~ilI 340 (535)
+-++..+-.++.. ++.|-|||-+|- |.+|-....+ |....||.+++
T Consensus 172 aGavE~~v~~~~~-~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL 220 (301)
T PF07755_consen 172 AGAVEALVPEAAE-EHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVL 220 (301)
T ss_dssp HHHHHHHHHHHCC-C-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEE
T ss_pred HHHHHHHHHhhCc-CCCEEEEeccccccCccccccchhhhccCCCCeEEE
Confidence 4445555555553 347999999994 4444442222 22225776554
No 248
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.24 E-value=6.2e+02 Score=24.33 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
..+.++.|...++|++++...+..-. ..+.+.+++ ++||.+
T Consensus 44 ~~~~i~~l~~~~~dgiii~~~~~~~~----~~~~~~~~~--ipvV~i 84 (270)
T cd06296 44 ERQWVERLSARRTDGVILVTPELTSA----QRAALRRTG--IPFVVV 84 (270)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCChH----HHHHHhcCC--CCEEEE
Confidence 44678888999999999988764321 234444445 556654
No 249
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=24.91 E-value=1.3e+02 Score=36.08 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHH
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIF 254 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~ 254 (535)
..+++++.+++.++|.+|-|||--.++.|..++
T Consensus 527 ~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia 559 (862)
T PRK13805 527 TVRKGAELMRSFKPDTIIALGGGSPMDAAKIMW 559 (862)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 367889999999999999999999999988775
No 250
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.91 E-value=5.1e+02 Score=26.13 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=42.3
Q ss_pred hchhcccCcceeccCC---CCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEee
Q 009394 204 NGIHKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAG 268 (535)
Q Consensus 204 ~~i~~~GGs~LGTsR~---~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~Vvg 268 (535)
..+...|+.+.+..+. ..|+...+..+++.+-|.+|+.+... .+..+.+.+++.|++.++++
T Consensus 159 ~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~---~~~~~~~~~~~~G~~~~~~~ 223 (312)
T cd06346 159 KAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPE---TGSGILRSAYEQGLFDKFLL 223 (312)
T ss_pred HHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccc---hHHHHHHHHHHcCCCCceEe
Confidence 3445667877776554 35788999999999999998775433 23445566667787655553
No 251
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=24.82 E-value=4.8e+02 Score=28.83 Aligned_cols=101 Identities=25% Similarity=0.336 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee-ccccccCccCCCcccCch--hHHHHHHHHHHH
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI-PKTIDNDIPIIDKSFGFD--TAVEEAQRAISA 299 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI-PkTIDNDI~gtD~S~GFd--TAv~~~~~ai~~ 299 (535)
..+.++.+++.-.+..++.|+--|...|..+.+ .|.+.-.||+ |.+|.-.-..++ +|.. ||+..+.+++.
T Consensus 252 ~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~----aGad~i~vg~g~G~~~~t~~~~~--~g~p~~~~i~~~~~~~~- 324 (450)
T TIGR01302 252 VIDSIKEIKKTYPDLDIIAGNVATAEQAKALID----AGADGLRVGIGPGSICTTRIVAG--VGVPQITAVYDVAEYAA- 324 (450)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHH----hCCCEEEECCCCCcCCccceecC--CCccHHHHHHHHHHHHh-
Confidence 445666666654577778888888888877765 3777655676 776643221111 3333 45444444332
Q ss_pred HHhhhhcCcceEEEEEecC--CCccHHHHHHhHhcCCccEEecCC
Q 009394 300 AHVEAESFENGIGVVKLMG--RYSGFIAMYATIASRDVDCCLIPE 342 (535)
Q Consensus 300 i~~~A~S~~~rv~iVEvMG--R~sG~LAl~aaLAs~~ad~ilIPE 342 (535)
. .++-|+ ..| |+.|.++- |||. ||+.+.+-.
T Consensus 325 ------~--~~vpvi-adGGi~~~~di~k--Ala~-GA~~V~~G~ 357 (450)
T TIGR01302 325 ------Q--SGIPVI-ADGGIRYSGDIVK--ALAA-GADAVMLGS 357 (450)
T ss_pred ------h--cCCeEE-EeCCCCCHHHHHH--HHHc-CCCEEEECc
Confidence 1 123332 344 56777764 5555 688877643
No 252
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=24.67 E-value=40 Score=38.54 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=67.5
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHH-HHHHH-HHcCCCeeEeeeccccccCccCC-CcccCchhHHHHHHHHHH
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASA-IFEEI-RRRGLKVAVAGIPKTIDNDIPII-DKSFGFDTAVEEAQRAIS 298 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~-L~~~~-~~~g~~i~VvgIPkTIDNDI~gt-D~S~GFdTAv~~~~~ai~ 298 (535)
...+++.++.--+-|+++++||||.+.-+.- |.+.- -+...+++|--||.==.|++..+ -.+-||+-+++.....|
T Consensus 224 HArei~rt~dl~kyDgIv~vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~~~~~~a~l~ii- 302 (579)
T KOG1116|consen 224 HAREIVRTLDLGKYDGIVCVSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGPDLPLLATLLII- 302 (579)
T ss_pred HHHHHHHhhhccccceEEEecCCcCHHHhhhccccccchhhHhcCceeEeecCCccHHHHHhhcccCcccchHHHHHHH-
Confidence 4567888888889999999999999865321 11100 01145788999999999999653 24667642333222222
Q ss_pred HHHhhhhcCcceEEEEEecCCC--ccHHHHHHhHhcCCcc
Q 009394 299 AAHVEAESFENGIGVVKLMGRY--SGFIAMYATIASRDVD 336 (535)
Q Consensus 299 ~i~~~A~S~~~rv~iVEvMGR~--sG~LAl~aaLAs~~ad 336 (535)
+.--. .--++.||.+++. -+||.+.-||-+ ++|
T Consensus 303 --rg~~t--~~dv~~v~~~~~~~~fSfLs~~wGlIA-DiD 337 (579)
T KOG1116|consen 303 --RGRLT--PMDVSVVEYAGKDRHFSFLSAAWGLIA-DVD 337 (579)
T ss_pred --ccCCC--chheeehhhccCcceEEEEeeeeeeEE-ecc
Confidence 21111 1248888888876 577766666655 344
No 253
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=24.51 E-value=4.6e+02 Score=26.86 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=44.8
Q ss_pred hchhc--ccCcceeccCC---C-CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 204 NGIHK--RGGTILGTSRG---G-HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 204 ~~i~~--~GGs~LGTsR~---~-~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
..+.. .|+++++..+. . .|+...+..|++.+.|.+++++..+ .+..+.+.+++.|++.++++.
T Consensus 165 ~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~~ 233 (342)
T cd06329 165 AMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWGN---DLLLLVKQAADAGLKLPFYTP 233 (342)
T ss_pred HHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcccCc---hHHHHHHHHHHcCCCceEEec
Confidence 34455 77888876554 3 5778888999999999998877443 234567777888887666543
No 254
>PLN02801 beta-amylase
Probab=24.44 E-value=4.7e+02 Score=29.85 Aligned_cols=96 Identities=24% Similarity=0.331 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhCCcEEEE------ec--CCc--chHHHHHHHHHHHHcCCCeeEe----------------eecccccc-
Q 009394 223 TSKIVDSIQDRGINQVYV------LG--GDG--TQKGASAIFEEIRRRGLKVAVA----------------GIPKTIDN- 275 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~Lvv------IG--Gdg--S~~~A~~L~~~~~~~g~~i~Vv----------------gIPkTIDN- 275 (535)
++.=+..|+..|++++.+ += |.+ -..+-.+|++.+++.|+++.+| -+|+-+-+
T Consensus 39 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~~~ 118 (517)
T PLN02801 39 LEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQWVRDV 118 (517)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 556678889999999864 22 333 2455677888888889887654 37776543
Q ss_pred -----CccCCCc---------ccCch--------hHHHHHHHHHHHHHhhhhcCc--ceEEEEEecC
Q 009394 276 -----DIPIIDK---------SFGFD--------TAVEEAQRAISAAHVEAESFE--NGIGVVKLMG 318 (535)
Q Consensus 276 -----DI~gtD~---------S~GFd--------TAv~~~~~ai~~i~~~A~S~~--~rv~iVEvMG 318 (535)
||..||. |+|.| |+++...+...+.+++-...- .-|.=|++=.
T Consensus 119 g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~~I~eI~VGl 185 (517)
T PLN02801 119 GDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFLEAGVIIDIEVGL 185 (517)
T ss_pred hccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEEcc
Confidence 8888875 77877 789999999999888765533 2345555543
No 255
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=24.42 E-value=6.8e+02 Score=27.31 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHH---HHHHHHHHHHc---CCCeeEeeeccccccCccCCCcccCchhHHHHHHHHH
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKG---ASAIFEEIRRR---GLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAI 297 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~---A~~L~~~~~~~---g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai 297 (535)
+.|.+..++++-+.++|+.+=-+-.. ...+.++++++ ...++|+.++. -+..+ .+.-||+.|++.+.+.+
T Consensus 71 ~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t---~gf~g-~~~~G~~~a~~al~~~l 146 (417)
T cd01966 71 EALDTLAERAKPKVIGLLSTGLTETRGEDIAGALKQFRAEHPELADVPVVYVST---PDFEG-SLEDGWAAAVEAIIEAL 146 (417)
T ss_pred HHHHHHHHhcCCCEEEEECCCcccccccCHHHHHHHHHhhccccCCCeEEEecC---CCCCC-cHHHHHHHHHHHHHHHh
Confidence 44555566889999988775433221 12233333333 13467777664 34455 36778888888877644
No 256
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=24.23 E-value=1.3e+02 Score=27.91 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=28.2
Q ss_pred CcHHHHHHHHHHhCC-cEEEEecCCcc---hHHHHHHHHHHHHcCC
Q 009394 221 HDTSKIVDSIQDRGI-NQVYVLGGDGT---QKGASAIFEEIRRRGL 262 (535)
Q Consensus 221 ~d~~ki~~~l~~~~I-d~LvvIGGdgS---~~~A~~L~~~~~~~g~ 262 (535)
..++++++.|++.++ +..+++||.-. .+.+. -.+++++.|+
T Consensus 65 ~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~-~~~~L~~~Gv 109 (128)
T cd02072 65 IDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFED-VEKRFKEMGF 109 (128)
T ss_pred HHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHH-HHHHHHHcCC
Confidence 457899999999999 88899999843 33222 2244555665
No 257
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=24.20 E-value=9.2e+02 Score=25.99 Aligned_cols=150 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHH---HHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHH
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKG---ASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISA 299 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~---A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~ 299 (535)
.+.|.+.+++++-+.++|++.--+..- ...+.++++++- .++|+.++ .+...+ ++.-||+-|++.+.+.+..
T Consensus 75 ~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~-~~~vi~v~---t~gf~g-~~~~G~~~a~~~l~~~l~~ 149 (410)
T cd01968 75 YKAILEIIERYHPKAVFVYSTCVVALIGDDIDAVCKTASEKF-GIPVIPVH---SPGFVG-NKNLGNKLACEALLDHVIG 149 (410)
T ss_pred HHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhh-CCCEEEEE---CCCccc-ChhHHHHHHHHHHHHHhcC
Q ss_pred HHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhCCcEEE-EEecCCCch
Q 009394 300 AHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVI-VIAEGAGQE 378 (535)
Q Consensus 300 i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~~~~vI-VVaEGa~~~ 378 (535)
-.......++. +-+|++..+. +.++.|++-+++-|.-++ +...+..-+
T Consensus 150 ~~~~~~~~~~~--------------------------VNiig~~~~~-----~d~~el~~lL~~~Gl~v~~~~~~~~s~e 198 (410)
T cd01968 150 TEEPEPLTPYD--------------------------INLIGEFNVA-----GELWGVKPLLEKLGIRVLASITGDSRVD 198 (410)
T ss_pred CCCcccCCCCc--------------------------EEEECCCCCc-----ccHHHHHHHHHHcCCeEEEEeCCCCCHH
Q ss_pred hhHHHhhhcccccccCCccc-hhhHHHHHHHHHHHhC
Q 009394 379 LLSEIMHTMDQQDASGNKLL-QDVGLWISQKIRDHFG 414 (535)
Q Consensus 379 ~~~~~~~~~~~~Da~Gn~~l-~~ig~~L~~~I~~~~~ 414 (535)
-+... -.+.-|..+ ...+..+++.++++|+
T Consensus 199 ei~~~------~~A~lniv~~~~~~~~~a~~L~~~fG 229 (410)
T cd01968 199 EIRRA------HRAKLNVVQCSKSMIYLARKMEEKYG 229 (410)
T ss_pred HHHhh------hhCcEEEEEchhHHHHHHHHHHHHhC
No 258
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=24.19 E-value=8e+02 Score=25.91 Aligned_cols=104 Identities=18% Similarity=0.201 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee-ccccccCccCCCcccCchhHHHHHHHHHHHH
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI-PKTIDNDIPIIDKSFGFDTAVEEAQRAISAA 300 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI-PkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 300 (535)
...++++.+++..=+..+++|.-.|...|..+.+ .|.+.-+|++ |.++...-........--|++..+.++++..
T Consensus 121 ~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~----aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~ 196 (325)
T cd00381 121 YVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLID----AGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDY 196 (325)
T ss_pred HHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHh----cCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhc
Confidence 3456667777654345666677777777766654 4766544433 5553211111111112224444444433211
Q ss_pred HhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEec
Q 009394 301 HVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLI 340 (535)
Q Consensus 301 ~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilI 340 (535)
.+-|| ..|+-.----...+|+. +||.+.+
T Consensus 197 ---------~vpVI-A~GGI~~~~di~kAla~-GA~~Vmi 225 (325)
T cd00381 197 ---------GVPVI-ADGGIRTSGDIVKALAA-GADAVML 225 (325)
T ss_pred ---------CCcEE-ecCCCCCHHHHHHHHHc-CCCEEEe
Confidence 23344 45544422233455566 7898887
No 259
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=24.14 E-value=1.5e+02 Score=33.19 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTID 274 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID 274 (535)
+++..+..|-+..+|.++||||.-|-.+ ..|++-++++|.+.-.|-=|.=|+
T Consensus 350 eRQdA~~~L~~~~vDlmiVVGG~NSSNT-~~L~eIa~~~g~~sy~Ie~~~eI~ 401 (460)
T PLN02821 350 ERQDAMYKLVEEKLDLMLVVGGWNSSNT-SHLQEIAEHKGIPSYWIDSEERIG 401 (460)
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCCccH-HHHHHHHHHhCCCEEEECCHHHcC
Confidence 4567777776667999999999998765 457788877776655555566665
No 260
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=24.13 E-value=7.8e+02 Score=25.91 Aligned_cols=152 Identities=18% Similarity=0.217 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHH---HHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHH
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASA---IFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISA 299 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~---L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~ 299 (535)
.+.+.+.+++++=+.++++++--+-..... +.+++++ ...++|+.+.. +... -++.-|+++|++.+.+.+..
T Consensus 69 ~~~i~~~~~~~~p~~i~v~~tc~~~liGdDi~~v~~~~~~-~~~~~vv~~~~---~gf~-~~~~~G~~~a~~~~~~~~~~ 143 (399)
T cd00316 69 LEAIINELKRYKPKVIFVYTTCTTELIGDDIEAVAKEASK-EIGIPVVPAST---PGFR-GSQSAGYDAAVKAIIDHLVG 143 (399)
T ss_pred HHHHHHHHHHcCCCEEEEecCchhhhhccCHHHHHHHHHH-hhCCceEEeeC---CCCc-ccHHHHHHHHHHHHHHHHhc
Confidence 567788888888899999987655333222 2333332 23455555443 2222 34566888888777665432
Q ss_pred HHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhCCcEEE-EEecCCCch
Q 009394 300 AHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVI-VIAEGAGQE 378 (535)
Q Consensus 300 i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~~~~vI-VVaEGa~~~ 378 (535)
-....... .-.+-+|.+.+..- +.++.|++-+++-|.-++ +...|..-+
T Consensus 144 ~~~~~~~~--------------------------~~~vNlig~~~~~~----~d~~el~~ll~~~G~~v~~~~~~~~s~~ 193 (399)
T cd00316 144 TAEPEETE--------------------------PGSVNLIGGYNLGG----GDLRELKRLLEEMGIRVNALFDGGTTVE 193 (399)
T ss_pred ccCcCCCC--------------------------CCcEEEECCCCCch----hhHHHHHHHHHHcCCcEEEEcCCCCCHH
Confidence 10000000 22345666665432 245667777776675554 444445422
Q ss_pred hhHHHhhhcccccccCCccchh-hHHHHHHHHHHHhCC
Q 009394 379 LLSEIMHTMDQQDASGNKLLQD-VGLWISQKIRDHFGK 415 (535)
Q Consensus 379 ~~~~~~~~~~~~Da~Gn~~l~~-ig~~L~~~I~~~~~~ 415 (535)
-+.+ ..++.-|..+.. .+..+++.++++++.
T Consensus 194 ~i~~------~~~A~~nlv~~~~~g~~~a~~l~~~~g~ 225 (399)
T cd00316 194 ELRE------LGNAKLNLVLCRESGLYLARYLEEKYGI 225 (399)
T ss_pred HHHh------hccCcEEEEecHhHHHHHHHHHHHHhCC
Confidence 2211 135666666655 788889998888763
No 261
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=24.07 E-value=2.6e+02 Score=27.08 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=47.6
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTS 224 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 224 (535)
..++.++ || .|+.+ ..+++.+...|++.+|.|. +||-. . +-....++.|...+-.+|-.+-+....|
T Consensus 48 ~~~vfll--G~-~~~v~---~~~~~~l~~~yP~l~i~g~-~g~f~---~---~~~~~i~~~I~~s~~dil~VglG~PkQE 114 (177)
T TIGR00696 48 KLPIFLY--GG-KPDVL---QQLKVKLIKEYPKLKIVGA-FGPLE---P---EERKAALAKIARSGAGIVFVGLGCPKQE 114 (177)
T ss_pred CCeEEEE--CC-CHHHH---HHHHHHHHHHCCCCEEEEE-CCCCC---h---HHHHHHHHHHHHcCCCEEEEEcCCcHhH
Confidence 3466665 44 55543 3444445556899999887 66642 1 1112346677777666655555544455
Q ss_pred HHHHHH-HHhCCcEEEEecC
Q 009394 225 KIVDSI-QDRGINQVYVLGG 243 (535)
Q Consensus 225 ki~~~l-~~~~Id~LvvIGG 243 (535)
+.+... ..++...++-+||
T Consensus 115 ~~~~~~~~~~~~~v~~gvGg 134 (177)
T TIGR00696 115 IWMRNHRHLKPDAVMIGVGG 134 (177)
T ss_pred HHHHHhHHhCCCcEEEEece
Confidence 555544 3344445555666
No 262
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=24.00 E-value=7e+02 Score=24.51 Aligned_cols=24 Identities=4% Similarity=-0.100 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcc
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGT 246 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS 246 (535)
..+.++.|...++|++++.....+
T Consensus 49 ~~~~i~~l~~~~vDgiIv~~~~~~ 72 (280)
T cd06303 49 QSQQLNEALQSKPDYLIFTLDSLR 72 (280)
T ss_pred HHHHHHHHHHcCCCEEEEcCCchh
Confidence 346778888999999999876543
No 263
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=23.80 E-value=2.1e+02 Score=32.35 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=57.5
Q ss_pred eEEEEccCCCCCch-hHHHHHHHHHHHHhcCCeEEEEEc-ccccc-ccCCCeeeCCHhHHhchhcc-------cCc--ce
Q 009394 147 HACIVTCGGLCPGL-NTVIREIVCGLYYMYGVHKVLGIE-GGYRG-FYARNTIPLTPKIVNGIHKR-------GGT--IL 214 (535)
Q Consensus 147 ~iaIvtsGG~apGm-NavIr~vv~~l~~~~~~~~V~Gi~-~G~~G-L~~~~~~~L~~~~V~~i~~~-------GGs--~L 214 (535)
.|+|+++ ..+|| -.=|.++++.....+++..|+-+. .||.| ..++-+.......++.+... .+. +|
T Consensus 131 ~I~V~tT--C~t~lIGDDi~av~k~~~~~~~~~pVi~v~tpGF~G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNli 208 (513)
T TIGR01861 131 RMTIYQT--CATALIGDDIAAIAKEVMEEMPDVDIFVCNSPGFAGPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYV 208 (513)
T ss_pred eEEEEcc--CchhhccCCHHHHHHHHHHhcCCCcEEEEeCCCccCccccchHHHHHHHHHHHhhcccCcccCCCCeEEEe
Confidence 4666653 23332 222344444443334334566655 79998 44432211111112221110 111 34
Q ss_pred eccCCCCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHH
Q 009394 215 GTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIF 254 (535)
Q Consensus 215 GTsR~~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~ 254 (535)
|.-...-|++.+.+.|++.||+.+.++.|+.++.....+.
T Consensus 209 G~~n~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~~ 248 (513)
T TIGR01861 209 GEYNIQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGMH 248 (513)
T ss_pred CCCCCccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhc
Confidence 4333345789999999999999999999999987655443
No 264
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.75 E-value=4.1e+02 Score=24.76 Aligned_cols=119 Identities=13% Similarity=0.194 Sum_probs=62.9
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHh-HHhchhcccCcceecc-CCC---C
Q 009394 147 HACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPK-IVNGIHKRGGTILGTS-RGG---H 221 (535)
Q Consensus 147 ~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~-~V~~i~~~GGs~LGTs-R~~---~ 221 (535)
+|.+-+.|||.=-+..-+ +..+.+.+ +.+|+- .| ...+++ .++.....+-.++|-| .-. .
T Consensus 3 ~vvigtv~~D~HdiGk~i---v~~~l~~~-GfeVi~-----LG------~~v~~e~~v~aa~~~~adiVglS~l~~~~~~ 67 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKI---LDHAFTNA-GFNVVN-----LG------VLSPQEEFIKAAIETKADAILVSSLYGHGEI 67 (134)
T ss_pred eEEEEEecCChhhHhHHH---HHHHHHHC-CCEEEE-----CC------CCCCHHHHHHHHHHcCCCEEEEecccccCHH
Confidence 677788888876544422 22222223 345541 12 123333 3444444445555533 322 3
Q ss_pred cHHHHHHHHHHhCC-cEEEEecCCcchHHHH--HHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHH
Q 009394 222 DTSKIVDSIQDRGI-NQVYVLGGDGTQKGAS--AIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAIS 298 (535)
Q Consensus 222 d~~ki~~~l~~~~I-d~LvvIGGdgS~~~A~--~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~ 298 (535)
.+.++++.|++.++ +..+++||.-..-... ...+.+++.|+ |..||-+|-.+.+.+.++
T Consensus 68 ~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv------------------~~vF~pgt~~~~iv~~l~ 129 (134)
T TIGR01501 68 DCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGF------------------DRVFAPGTPPEVVIADLK 129 (134)
T ss_pred HHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCC------------------CEEECcCCCHHHHHHHHH
Confidence 57889999999999 5567799974432211 12234555564 445555555666655554
No 265
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=23.74 E-value=1.3e+02 Score=29.31 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=36.5
Q ss_pred EecCCCccHHHHHHhHhcCCccEEecCCCCCCCCC--cchHHHHHHHHHHhCCcEEEEEecC
Q 009394 315 KLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEG--PGGLFEYIEKRLKENGHMVIVIAEG 374 (535)
Q Consensus 315 EvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~--~~~l~e~I~~rl~~~~~~vIVVaEG 374 (535)
++-|+..=-+++..+|+. .++++++=|---.+|. .+.+.+.|++..++++..+|+++.-
T Consensus 137 ~LS~G~~qrv~laral~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 137 ELSGGEKQRISLIRNLQF-MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred cCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 455555556889999999 7999998554334442 2344454554334446677777643
No 266
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=23.67 E-value=6.8e+02 Score=24.28 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
..+.++.|...++|++++...+. .....+.+.+.+ + ++||.+
T Consensus 44 ~~~~i~~l~~~~vDgiIi~~~~~--~~~~~~l~~~~~-~--ipvV~~ 85 (271)
T cd06314 44 QLRMLEDLIAEGVDGIAISPIDP--KAVIPALNKAAA-G--IKLITT 85 (271)
T ss_pred HHHHHHHHHhcCCCEEEEecCCh--hHhHHHHHHHhc-C--CCEEEe
Confidence 45778888999999999997652 222233344443 4 556654
No 267
>PRK04155 chaperone protein HchA; Provisional
Probab=23.57 E-value=8.6e+02 Score=25.41 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=26.0
Q ss_pred HHHHHHHHH--HhCCcEEEEecCCcchHH------HHHHHHHHHHcC
Q 009394 223 TSKIVDSIQ--DRGINQVYVLGGDGTQKG------ASAIFEEIRRRG 261 (535)
Q Consensus 223 ~~ki~~~l~--~~~Id~LvvIGGdgS~~~------A~~L~~~~~~~g 261 (535)
.+.+++... ....|+||+-||-|.+.. +.+|.+++.+.+
T Consensus 134 l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~ 180 (287)
T PRK04155 134 LADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDND 180 (287)
T ss_pred HHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcC
Confidence 455555544 467899999999998654 344555555554
No 268
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.14 E-value=5.3e+02 Score=27.88 Aligned_cols=162 Identities=14% Similarity=0.049 Sum_probs=85.4
Q ss_pred EEEccCCCCCchh-HHHHHHHHHHHHhcCCe------EE--EEEccccccccCCCe-eeC--CHhHHhc-hhcccCccee
Q 009394 149 CIVTCGGLCPGLN-TVIREIVCGLYYMYGVH------KV--LGIEGGYRGFYARNT-IPL--TPKIVNG-IHKRGGTILG 215 (535)
Q Consensus 149 aIvtsGG~apGmN-avIr~vv~~l~~~~~~~------~V--~Gi~~G~~GL~~~~~-~~L--~~~~V~~-i~~~GGs~LG 215 (535)
+|+++||==|=+| ..+..+++.+....+.+ .| .|+-.+++-|...+. +.| +-...++ .+. .+.+
T Consensus 163 ~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~e~r~---~l~p 239 (356)
T PRK14462 163 NIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDDELRS---ELMP 239 (356)
T ss_pred CeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCHHHHH---HhCC
Confidence 7888877778888 45666666664322221 11 344444444443322 111 1111110 111 1233
Q ss_pred ccCCCCcHHHHHHHHHHhC--------CcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCch
Q 009394 216 TSRGGHDTSKIVDSIQDRG--------INQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFD 287 (535)
Q Consensus 216 TsR~~~d~~ki~~~l~~~~--------Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFd 287 (535)
.++. ..+++++++++.+- |.++++=|=|++...|.+|++.++.. ++.|=-|| -|++++.++-.=-+
T Consensus 240 v~~~-~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l--~~~VnLIP---yn~~~~~~~~~ps~ 313 (356)
T PRK14462 240 INKA-YNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGI--KAKVNLIL---FNPHEGSKFERPSL 313 (356)
T ss_pred CCcc-CCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhc--CcEEEEEe---CCCCCCCCCCCCCH
Confidence 3322 24566777666443 67788888899999999999988654 45566666 35555554422223
Q ss_pred hHHHHHHHHHHHHHhhhhcCcceEEEEEecCCC----ccHHHH
Q 009394 288 TAVEEAQRAISAAHVEAESFENGIGVVKLMGRY----SGFIAM 326 (535)
Q Consensus 288 TAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~----sG~LAl 326 (535)
-.++...+.+ .++.-.+.|-..+|++ ||-|+.
T Consensus 314 e~i~~f~~~l-------~~~gi~vtvR~~~G~dI~aACGQL~~ 349 (356)
T PRK14462 314 EDMIKFQDYL-------NSKGLLCTIRESKGLDISAACGQLRE 349 (356)
T ss_pred HHHHHHHHHH-------HHCCCcEEEeCCCCCchhhcCccchh
Confidence 3333332222 2222347777888875 565544
No 269
>PLN02905 beta-amylase
Probab=23.11 E-value=4.8e+02 Score=30.62 Aligned_cols=100 Identities=25% Similarity=0.317 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhCCcEEEE------ec--CCc--chHHHHHHHHHHHHcCCCeeEe----------------eeccccc--
Q 009394 223 TSKIVDSIQDRGINQVYV------LG--GDG--TQKGASAIFEEIRRRGLKVAVA----------------GIPKTID-- 274 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~Lvv------IG--Gdg--S~~~A~~L~~~~~~~g~~i~Vv----------------gIPkTID-- 274 (535)
++.=+..|+..|++++.+ += |.+ -..+-..|++.+++.||++.+| -||+-+-
T Consensus 288 l~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~ 367 (702)
T PLN02905 288 LLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEI 367 (702)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 456677899999999864 22 322 2455677888899999887665 3777654
Q ss_pred ----cCccCCCc---------ccCch--------hHHHHHHHHHHHHHhhhhcCc--ceEEEEEecCCCcc
Q 009394 275 ----NDIPIIDK---------SFGFD--------TAVEEAQRAISAAHVEAESFE--NGIGVVKLMGRYSG 322 (535)
Q Consensus 275 ----NDI~gtD~---------S~GFd--------TAv~~~~~ai~~i~~~A~S~~--~rv~iVEvMGR~sG 322 (535)
.||..||. |+|.| |+++.+.+.+...++.-...- .-|.=|++=.+-||
T Consensus 368 g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGPaG 438 (702)
T PLN02905 368 GRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFEDGVISMVEVGLGPCG 438 (702)
T ss_pred hhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCCc
Confidence 38888885 88888 688999999988887765531 23666666554444
No 270
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=22.88 E-value=2.1e+02 Score=26.87 Aligned_cols=43 Identities=19% Similarity=0.375 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHh--CCcEEEEecCCcchHH-HHHHHHHHHHcCCCee
Q 009394 222 DTSKIVDSIQDR--GINQVYVLGGDGTQKG-ASAIFEEIRRRGLKVA 265 (535)
Q Consensus 222 d~~ki~~~l~~~--~Id~LvvIGGdgS~~~-A~~L~~~~~~~g~~i~ 265 (535)
+.+++.+.+++. .+.++.+-||+ .+.. ...|.+.++++|+++.
T Consensus 47 t~eel~~~I~~~~~~~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~ 92 (147)
T TIGR02826 47 TPEYLTKTLDKYRSLISCVLFLGGE-WNREALLSLLKIFKEKGLKTC 92 (147)
T ss_pred CHHHHHHHHHHhCCCCCEEEEechh-cCHHHHHHHHHHHHHCCCCEE
Confidence 456666666665 57899999999 5433 5567777777776643
No 271
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.81 E-value=4e+02 Score=25.98 Aligned_cols=90 Identities=12% Similarity=0.232 Sum_probs=64.9
Q ss_pred EEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHh-HHhchhcccCcceeccCCCCcHHHHH
Q 009394 149 CIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPK-IVNGIHKRGGTILGTSRGGHDTSKIV 227 (535)
Q Consensus 149 aIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~-~V~~i~~~GGs~LGTsR~~~d~~ki~ 227 (535)
+|+..|-.-.++-..|+.+|+ ++|+. |-|. ..-+|. .+..|.. ||....-.=++.....+.
T Consensus 34 gil~~~e~De~v~esv~dVv~----rwGG~--F~v~-----------~~~nw~~~i~~wk~-gG~vvHLTMYG~~i~dv~ 95 (179)
T COG1303 34 GILLDGEEDEKVVESVEDVVE----RWGGP--FFVK-----------FGVNWRKVIREWKE-GGIVVHLTMYGLNIDDVI 95 (179)
T ss_pred eEEEcCcccHHHHHHHHHHHH----hcCCC--EEEE-----------EcccHHHHHHHhhc-CCEEEEEEecCCcchhhh
Confidence 567777667888888888886 35653 3222 234565 5678888 997776666667777888
Q ss_pred HHHHHhCCcEEEEecCCcchHHHHHHHHH
Q 009394 228 DSIQDRGINQVYVLGGDGTQKGASAIFEE 256 (535)
Q Consensus 228 ~~l~~~~Id~LvvIGGdgS~~~A~~L~~~ 256 (535)
+.|++.+=+-|+++|+.---.-+..|+++
T Consensus 96 ~ei~~~~k~~lvvVGaeKVp~evYelADy 124 (179)
T COG1303 96 DEIRESKKDVLVVVGAEKVPGEVYELADY 124 (179)
T ss_pred HHHHhcCCcEEEEEccccCCHHHhhhccc
Confidence 88888888899999998887777777653
No 272
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.78 E-value=7e+02 Score=24.06 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC-cccCc--hhHHHHHHHHHHH
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID-KSFGF--DTAVEEAQRAISA 299 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD-~S~GF--dTAv~~~~~ai~~ 299 (535)
..+.++.+...++|++++.+-.-... .+. ++.+.+ ++||.+ |++++..+ .++++ ..|...+++.+
T Consensus 44 ~~~~i~~~~~~~~dgiii~~~~~~~~---~~~-~~~~~~--~pvV~i----~~~~~~~~~~~V~~d~~~~~~~~~~~L-- 111 (269)
T cd06293 44 ELTYLRWLDTNHVDGLIFVTNRPDDG---ALA-KLINSY--GNIVLV----DEDVPGAKVPKVFCDNEQGGRLATRHL-- 111 (269)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCHH---HHH-HHHhcC--CCEEEE----CCCCCCCCCCEEEECCHHHHHHHHHHH--
Confidence 35778889999999999987432222 122 222345 456654 33332221 34444 34444444443
Q ss_pred HHhhhhcCcceEEEEEe-------cCCCccHHHHH
Q 009394 300 AHVEAESFENGIGVVKL-------MGRYSGFIAMY 327 (535)
Q Consensus 300 i~~~A~S~~~rv~iVEv-------MGR~sG~LAl~ 327 (535)
.. .++ +++.++-- .-|..||....
T Consensus 112 -~~--~G~-~~i~~i~~~~~~~~~~~R~~Gf~~a~ 142 (269)
T cd06293 112 -AR--AGH-RRIAFVGGPDALISARERYAGYREAL 142 (269)
T ss_pred -HH--CCC-ceEEEEecCcccccHHHHHHHHHHHH
Confidence 32 244 56777742 13456666543
No 273
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=22.60 E-value=1.4e+02 Score=25.05 Aligned_cols=37 Identities=24% Similarity=0.452 Sum_probs=27.3
Q ss_pred cCcceeccCCCCcHHHHHHHHHHhCCcEEEEecCCcchH
Q 009394 210 GGTILGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQK 248 (535)
Q Consensus 210 GGs~LGTsR~~~d~~ki~~~l~~~~Id~LvvIGGdgS~~ 248 (535)
++-+|=+. . .-.+.+.+.|+++++..+++|||.++..
T Consensus 50 ~~PIll~~-~-~l~~~~~~~l~~~~~~~v~iiGg~~~is 86 (92)
T PF04122_consen 50 NAPILLVN-N-SLPSSVKAFLKSLNIKKVYIIGGEGAIS 86 (92)
T ss_pred CCeEEEEC-C-CCCHHHHHHHHHcCCCEEEEECCCCccC
Confidence 34455455 2 2237888889999999999999999864
No 274
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=22.54 E-value=1.1e+03 Score=26.17 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh-CCcEEEEecCCcchHH---HHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHH
Q 009394 223 TSKIVDSIQDR-GINQVYVLGGDGTQKG---ASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAIS 298 (535)
Q Consensus 223 ~~ki~~~l~~~-~Id~LvvIGGdgS~~~---A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~ 298 (535)
.+.|.+..+++ ...+++|+++--+-.. ...+.++++++--.++||.++ ..+..+..++-||+.|++.+.+.+-
T Consensus 113 ~~aI~e~~~~~p~p~~I~V~stC~~~lIGDDi~~v~~e~~~~~~~~pvv~v~---t~gf~g~s~~~G~~~a~~al~~~l~ 189 (457)
T TIGR01284 113 KRCILEAFREFPEIKRMYTYATCTTALIGDDIDAIAREVMEEIPDVDVFAIN---APGFAGPSQSKGHHVANITWINDKV 189 (457)
T ss_pred HHHHHHHHHhCCCCceEEEECCChHHhhccCHHHHHHHHHHhcCCCeEEEee---CCCcCCcccchHHHHHHHHHHHHHh
Q ss_pred HHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhCCcEEE-EEecCCCc
Q 009394 299 AAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVI-VIAEGAGQ 377 (535)
Q Consensus 299 ~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~~~~vI-VVaEGa~~ 377 (535)
.-.......++.|-|+ | .|... +.++.|++-+++-|..++ +...+..-
T Consensus 190 ~~~~~~~~~~~~VNii---G-------------------------~~~~~---gd~~el~~lL~~~Gl~v~~~~~g~~s~ 238 (457)
T TIGR01284 190 GTAEPEITTEYDVNLI---G-------------------------EYNIQ---GDLWVLKKYFERMGIQVLSTFTGNGCY 238 (457)
T ss_pred CccCcccCCCCeEEEE---c-------------------------cCCch---hhHHHHHHHHHHcCCeEEEEECCCCCH
Q ss_pred hhhHHHhhhcccccccCCccch-hhHHHHHHHHHHHhC
Q 009394 378 ELLSEIMHTMDQQDASGNKLLQ-DVGLWISQKIRDHFG 414 (535)
Q Consensus 378 ~~~~~~~~~~~~~Da~Gn~~l~-~ig~~L~~~I~~~~~ 414 (535)
+-+... ..+.-|..+. ..+..+++.++++++
T Consensus 239 ~ei~~~------~~A~lniv~~~~~~~~~A~~Le~~~G 270 (457)
T TIGR01284 239 DELRWM------HRAKLNVVRCARSANYIANELEERYG 270 (457)
T ss_pred HHHHhc------cccCEEEEEChHHHHHHHHHHHHHhC
No 275
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=22.49 E-value=6.3e+02 Score=24.12 Aligned_cols=61 Identities=21% Similarity=0.444 Sum_probs=37.9
Q ss_pred hhcccCcceeccCC---CCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCC--CeeEeee
Q 009394 206 IHKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGL--KVAVAGI 269 (535)
Q Consensus 206 i~~~GGs~LGTsR~---~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~--~i~VvgI 269 (535)
+...|..+...... ..++..+++.+++.+.+++++++.. ..+..+.+.+++.|+ ++++++.
T Consensus 160 ~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~---~~~~~~~~~~~~~g~~~~~~~i~~ 225 (299)
T cd04509 160 FKKKGGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLCGSG---EDAATILKQAAEAGLTGGYPILGI 225 (299)
T ss_pred HHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcccc---hHHHHHHHHHHHcCCCCCCcEEec
Confidence 34455555544332 2467788888888888888776653 334556667777777 5555543
No 276
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=22.35 E-value=9.4e+02 Score=25.42 Aligned_cols=156 Identities=12% Similarity=0.086 Sum_probs=87.2
Q ss_pred EEEccCCCCCchhH--HHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC------C
Q 009394 149 CIVTCGGLCPGLNT--VIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG------G 220 (535)
Q Consensus 149 aIvtsGG~apGmNa--vIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~------~ 220 (535)
-|+.+||+ |=++. .+..+++.+... + .+.+++-|.+... .....++.+.++.+...|=.++..+-. .
T Consensus 162 eV~lsGGD-PLl~~d~~L~~ll~~L~~i-~--~~~~IRi~tr~~~-~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei~ 236 (331)
T TIGR00238 162 EILISGGD-PLMAKDHELEWLLKRLEEI-P--HLVRLRIGTRLPV-VIPQRITDELCELLASFELQLMLVTHINHCNEIT 236 (331)
T ss_pred EEEEECCc-cccCCHHHHHHHHHHHHhc-C--CccEEEeecCCCc-cCchhcCHHHHHHHHhcCCcEEEEccCCChHhCC
Confidence 57888998 44432 477777776532 2 3444444444321 112335666555554444222222211 1
Q ss_pred CcHHHHHHHHHHhCCc----EEEEecCCcchHHHHHHHHHHHHcCCCeeEeeecccccc--CccCCCcccCchhHHHHHH
Q 009394 221 HDTSKIVDSIQDRGIN----QVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDN--DIPIIDKSFGFDTAVEEAQ 294 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id----~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDN--DI~gtD~S~GFdTAv~~~~ 294 (535)
+...+.++.|.+.||. ..+.-|=+++......|.+.+.+.|+. |=.+.. .+.+. =-|.+-.+.+.
T Consensus 237 ~~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~------pyyl~~~~~~~g~---~~f~~~~~~~~ 307 (331)
T TIGR00238 237 EEFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGII------PYYLHYLDKVQGA---KHFLVPDAEAA 307 (331)
T ss_pred HHHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCee------cCeecCcCCCCCc---ccccCCHHHHH
Confidence 3356677888888775 345567677777777787777665532 111111 11222 34788888888
Q ss_pred HHHHHHHhhhhcCcceEEEEEecC
Q 009394 295 RAISAAHVEAESFENGIGVVKLMG 318 (535)
Q Consensus 295 ~ai~~i~~~A~S~~~rv~iVEvMG 318 (535)
+.+..++.-.++.---.+++|+.|
T Consensus 308 ~i~~~l~~~~sG~~~P~~v~~~~g 331 (331)
T TIGR00238 308 QIVKELARLTSGYLVPKFAVEIMG 331 (331)
T ss_pred HHHHHHHhcCCCCcceeEEecCCC
Confidence 888887766555433367888765
No 277
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=22.24 E-value=37 Score=37.07 Aligned_cols=56 Identities=27% Similarity=0.318 Sum_probs=38.1
Q ss_pred hCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHH--HHHHHHHHHhh
Q 009394 233 RGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEE--AQRAISAAHVE 303 (535)
Q Consensus 233 ~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~--~~~ai~~i~~~ 303 (535)
.-+|.++++|||||.--|..|++. -. -+|+ ++..-|+||-|-..+ ..+.+..+...
T Consensus 167 ~~~D~iItLGGDGTvL~aS~LFq~----~V-PPV~----------sFslGslGFLtpf~f~~f~~~l~~v~~~ 224 (409)
T KOG2178|consen 167 NRFDLIITLGGDGTVLYASSLFQR----SV-PPVL----------SFSLGSLGFLTPFPFANFQEQLARVLNG 224 (409)
T ss_pred cceeEEEEecCCccEEEehhhhcC----CC-CCeE----------EeecCCccccccccHHHHHHHHHHHhcC
Confidence 358999999999998777777652 11 2332 455569999997654 46666665443
No 278
>PRK05660 HemN family oxidoreductase; Provisional
Probab=22.23 E-value=87 Score=33.62 Aligned_cols=66 Identities=17% Similarity=0.362 Sum_probs=45.9
Q ss_pred hCCcEEEEecCCcchHH---HHHHHHHHHH-----cCCCeeEeeeccccccCc-------cCCCcccCchhHHHHHHHHH
Q 009394 233 RGINQVYVLGGDGTQKG---ASAIFEEIRR-----RGLKVAVAGIPKTIDNDI-------PIIDKSFGFDTAVEEAQRAI 297 (535)
Q Consensus 233 ~~Id~LvvIGGdgS~~~---A~~L~~~~~~-----~g~~i~VvgIPkTIDNDI-------~gtD~S~GFdTAv~~~~~ai 297 (535)
..++.+++-||.-|+-. -..|.+.+++ .+..+.+-.=|.|++.+. ..+-.|+|.+|.-....+.+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l 136 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRL 136 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHh
Confidence 57999999999999743 3444555554 234677888899998775 33456999988876655444
Q ss_pred H
Q 009394 298 S 298 (535)
Q Consensus 298 ~ 298 (535)
.
T Consensus 137 ~ 137 (378)
T PRK05660 137 G 137 (378)
T ss_pred C
Confidence 3
No 279
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=22.15 E-value=2.6e+02 Score=25.40 Aligned_cols=74 Identities=23% Similarity=0.371 Sum_probs=47.2
Q ss_pred ccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc--CCC
Q 009394 186 GYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR--GLK 263 (535)
Q Consensus 186 G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~--g~~ 263 (535)
|..||+-.++.-++|++-.++. | .+|.+++++.++++.=++++ ||--=....+..|-+.++++ +.+
T Consensus 27 GITGFyl~eYkGmSP~~wkgf~------l-----~EDpe~ai~~I~d~s~~aV~-I~TVV~~~~~~~i~~~i~ekL~~er 94 (110)
T PF10126_consen 27 GITGFYLHEYKGMSPQDWKGFL------L-----DEDPEMAIKAINDLSENAVL-IGTVVDEEKVEKIEKLIKEKLKNER 94 (110)
T ss_pred CccEEEeEeecCCChHHhcCcc------c-----ccCHHHHHHHHHHhccCcEE-EEEEECHHHHHHHHHHHHHHhcCCc
Confidence 6666766667667766655542 1 38899999999998878765 44444455566665555443 445
Q ss_pred eeEeeecc
Q 009394 264 VAVAGIPK 271 (535)
Q Consensus 264 i~VvgIPk 271 (535)
-.++.+|-
T Consensus 95 yTii~iPi 102 (110)
T PF10126_consen 95 YTIIEIPI 102 (110)
T ss_pred eEEEEeeE
Confidence 55677764
No 280
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=21.85 E-value=7.7e+02 Score=24.20 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=41.9
Q ss_pred eEEEEccC---CCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcH
Q 009394 147 HACIVTCG---GLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDT 223 (535)
Q Consensus 147 ~iaIvtsG---G~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~ 223 (535)
|||++... -.-|-.+.++.++-+.+.. ++ .++.-. .+....+.
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~-~g-y~~~i~--------------------------------~~~~~~~~ 46 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKE-LG-IEYKYV--------------------------------ESKSDADY 46 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHH-cC-CeEEEE--------------------------------ecCCHHHH
Confidence 68888865 3678899999999887754 33 222211 11112234
Q ss_pred HHHHHHHHHhCCcEEEEecC
Q 009394 224 SKIVDSIQDRGINQVYVLGG 243 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGG 243 (535)
.+.++.|..+++|++++.+-
T Consensus 47 ~~~i~~l~~~~vdgiI~~~~ 66 (265)
T cd06354 47 EPNLEQLADAGYDLIVGVGF 66 (265)
T ss_pred HHHHHHHHhCCCCEEEEcCc
Confidence 56788899999999999874
No 281
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.84 E-value=2.2e+02 Score=29.61 Aligned_cols=61 Identities=15% Similarity=0.264 Sum_probs=44.0
Q ss_pred hhcccCcceeccCC---CCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 206 IHKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 206 i~~~GGs~LGTsR~---~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
|...|+.+.+..+. ..|+...+..|+.-+-|.+|++ +.+.. +..+.+.+++.|++.+++++
T Consensus 172 ~~~~G~~vv~~~~~~~~~~D~~~~v~~ik~a~pD~v~~~-~~~~~--~~~~~~~~~~~G~~~~~~~~ 235 (357)
T cd06337 172 LADAGYKLVDPGRFEPGTDDFSSQINAFKREGVDIVTGF-AIPPD--FATFWRQAAQAGFKPKIVTI 235 (357)
T ss_pred HHhCCcEEecccccCCCCCcHHHHHHHHHhcCCCEEEeC-CCccH--HHHHHHHHHHCCCCCCeEEE
Confidence 44568888877665 3588999999999999997654 44442 34466777788988777654
No 282
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=21.79 E-value=6.6e+02 Score=28.28 Aligned_cols=98 Identities=18% Similarity=0.253 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee-ccccccCccCCCc--ccCch--hHHHHHHHHHHH
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI-PKTIDNDIPIIDK--SFGFD--TAVEEAQRAISA 299 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI-PkTIDNDI~gtD~--S~GFd--TAv~~~~~ai~~ 299 (535)
+.++.|++.--+..++.|.-.|...|..+.+ .|.+.-.||+ |.+|. .|.. -+|.. ||+..+.++++
T Consensus 271 ~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~----aGad~I~vg~g~Gs~~----~t~~~~~~g~p~~~ai~~~~~~~~- 341 (495)
T PTZ00314 271 DMIKKLKSNYPHVDIIAGNVVTADQAKNLID----AGADGLRIGMGSGSIC----ITQEVCAVGRPQASAVYHVARYAR- 341 (495)
T ss_pred HHHHHHHhhCCCceEEECCcCCHHHHHHHHH----cCCCEEEECCcCCccc----ccchhccCCCChHHHHHHHHHHHh-
Confidence 3455555543355666666666666665544 3666545555 65542 1111 13333 34444443332
Q ss_pred HHhhhhcCcceEEEEEecC-CCccHHHHHHhHhcCCccEEecCC
Q 009394 300 AHVEAESFENGIGVVKLMG-RYSGFIAMYATIASRDVDCCLIPE 342 (535)
Q Consensus 300 i~~~A~S~~~rv~iVEvMG-R~sG~LAl~aaLAs~~ad~ilIPE 342 (535)
. .++-++=-=| |++|.++-+.+ . |||.|.+--
T Consensus 342 ------~--~~v~vIadGGi~~~~di~kAla--~-GA~~Vm~G~ 374 (495)
T PTZ00314 342 ------E--RGVPCIADGGIKNSGDICKALA--L-GADCVMLGS 374 (495)
T ss_pred ------h--cCCeEEecCCCCCHHHHHHHHH--c-CCCEEEECc
Confidence 1 1244443334 77888875544 4 688887643
No 283
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.68 E-value=9.2e+02 Score=25.08 Aligned_cols=103 Identities=16% Similarity=0.067 Sum_probs=61.0
Q ss_pred CchhHHHHHHHHHHHHhc----CCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCC---CcHHHHHHHH
Q 009394 158 PGLNTVIREIVCGLYYMY----GVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGG---HDTSKIVDSI 230 (535)
Q Consensus 158 pGmNavIr~vv~~l~~~~----~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~---~d~~ki~~~l 230 (535)
|......+.+++.+.... +..+|.-+..-+. +. ..+-..-...+...|+.+.+..+.. .|+...+..+
T Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~kvaiv~~~~~--~g---~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i 191 (351)
T cd06334 117 PTYSDQARALVQYIAEQEGGKLKGKKIALVYHDSP--FG---KEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQI 191 (351)
T ss_pred CCHHHHHHHHHHHHHHhcccCCCCCeEEEEeCCCc--cc---hhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHH
Confidence 444455666666554433 3556666543221 11 1111112233456677777776653 5788999999
Q ss_pred HHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEee
Q 009394 231 QDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAG 268 (535)
Q Consensus 231 ~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~Vvg 268 (535)
++.+-|+||+.+-.. .+..+.+.+++.|++.++++
T Consensus 192 ~~~~pd~V~~~~~~~---~~~~~~~~~~~~G~~~~~~~ 226 (351)
T cd06334 192 RRSGPDYVILWGWGV---MNPVAIKEAKRVGLDDKFIG 226 (351)
T ss_pred HHcCCCEEEEecccc---hHHHHHHHHHHcCCCceEEE
Confidence 999999998765544 23445677777888766654
No 284
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=21.57 E-value=8.3e+02 Score=24.50 Aligned_cols=86 Identities=6% Similarity=0.107 Sum_probs=49.2
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHH
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSK 225 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~k 225 (535)
..||++...-.-|-.+.+++++-+.+.. ++ .++.-+ .+........+
T Consensus 62 ~~Igvv~~~~~~~~~~~l~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~~ 108 (328)
T PRK11303 62 RSIGLIIPDLENTSYARIAKYLERQARQ-RG-YQLLIA-------------------------------CSDDQPDNEMR 108 (328)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------eCCCCHHHHHH
Confidence 4799998665667778888888776643 22 222110 01111122346
Q ss_pred HHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 226 IVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 226 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
+++.|...++|++++.+.+.... ...+.+.+.+ +|||.+
T Consensus 109 ~~~~l~~~~vdgiIi~~~~~~~~---~~~~~l~~~~--iPvV~v 147 (328)
T PRK11303 109 CAEHLLQRQVDALIVSTSLPPEH---PFYQRLQNDG--LPIIAL 147 (328)
T ss_pred HHHHHHHcCCCEEEEcCCCCCCh---HHHHHHHhcC--CCEEEE
Confidence 77788889999999988754322 1223344445 455543
No 285
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=21.57 E-value=2.1e+02 Score=28.51 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=55.7
Q ss_pred cCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCC---------------CcHHHHHHHHHH--hCCcE
Q 009394 175 YGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGG---------------HDTSKIVDSIQD--RGINQ 237 (535)
Q Consensus 175 ~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~---------------~d~~ki~~~l~~--~~Id~ 237 (535)
|.+.++|...+| +|.+-+.. .-+...+|+-|.+..+. ...++|++.+++ .+...
T Consensus 4 ~~i~EiF~siQG-EG~~~Gr~--------~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~~~~~~ 74 (212)
T COG0602 4 YRIVEIFDSIQG-EGKNIGRP--------SVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLGYKARG 74 (212)
T ss_pred eeEEEEEEEEec-Ccccccce--------eEEEEcCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcCCCcce
Confidence 345567776666 34333332 12456778888776541 136899999999 57778
Q ss_pred EEEecCCcchH-HHHHHHHHHHHcCCCe
Q 009394 238 VYVLGGDGTQK-GASAIFEEIRRRGLKV 264 (535)
Q Consensus 238 LvvIGGdgS~~-~A~~L~~~~~~~g~~i 264 (535)
+.+-||+-.+. ....|.+.++++|+++
T Consensus 75 V~lTGGEP~~~~~l~~Ll~~l~~~g~~~ 102 (212)
T COG0602 75 VSLTGGEPLLQPNLLELLELLKRLGFRI 102 (212)
T ss_pred EEEeCCcCCCcccHHHHHHHHHhCCceE
Confidence 99999999664 6788889888888774
No 286
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=21.33 E-value=1.3e+02 Score=31.11 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=37.6
Q ss_pred ccCCC--CcHHHHHHHHHHhCCcEEEEecCCcc------------hHHHHHHHHHHHHc---CCCeeEeeec
Q 009394 216 TSRGG--HDTSKIVDSIQDRGINQVYVLGGDGT------------QKGASAIFEEIRRR---GLKVAVAGIP 270 (535)
Q Consensus 216 TsR~~--~d~~ki~~~l~~~~Id~LvvIGGdgS------------~~~A~~L~~~~~~~---g~~i~VvgIP 270 (535)
|+|.. ..++..+..+...||+.+++++||-. +..|..|.+.+++. .+.|-+.+-|
T Consensus 67 tcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~P 138 (281)
T TIGR00677 67 TCTNMPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYP 138 (281)
T ss_pred ccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECC
Confidence 45542 35777888889999999999999983 23366666666552 2455556555
No 287
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=21.24 E-value=1.2e+02 Score=24.32 Aligned_cols=45 Identities=20% Similarity=0.465 Sum_probs=26.4
Q ss_pred CCHhHHhchhcccCcceeccCCCCcHHHHHHHHHHhCCcEEEEecCC-cchHHHHHHHHHH
Q 009394 198 LTPKIVNGIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYVLGGD-GTQKGASAIFEEI 257 (535)
Q Consensus 198 L~~~~V~~i~~~GGs~LGTsR~~~d~~ki~~~l~~~~Id~LvvIGGd-gS~~~A~~L~~~~ 257 (535)
+++..|+.+.++| ++.+++++.|++.||+.+ | .+..+...+.+++
T Consensus 8 i~~~lVd~F~~mG----------F~~dkVvevlrrlgik~~-----n~~dn~t~~~ilEEL 53 (55)
T PF09288_consen 8 IDKDLVDQFENMG----------FERDKVVEVLRRLGIKSM-----NGVDNETENKILEEL 53 (55)
T ss_dssp -SHHHHHHHHHHT------------HHHHHHHHHHS--SS-------SS--HHHHHHHHHH
T ss_pred CCHHHHHHHHHcC----------CcHHHHHHHHHHhCCCCC-----CCccchhHHHHHHHH
Confidence 4555566665553 678999999999999864 2 3456677777765
No 288
>PRK05261 putative phosphoketolase; Provisional
Probab=21.22 E-value=8.9e+02 Score=29.17 Aligned_cols=178 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred ccccCCccccccCCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccc-----------cccccCCCeeeC
Q 009394 130 FRRVGPREKVYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGG-----------YRGFYARNTIPL 198 (535)
Q Consensus 130 f~~agpr~~~~~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G-----------~~GL~~~~~~~L 198 (535)
|.+..|-.+-...++.+|--.+==.|-|||+|-+-..+.+-..+ |.-..+|-.-.| .+|=+..-+-++
T Consensus 28 yl~~n~ll~~pl~~~~~K~r~~GHwGt~pgln~vyahln~li~~-~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~i 106 (785)
T PRK05261 28 YLRDNPLLREPLKPEHVKPRLLGHWGTTPGLNFIYAHLNRLIRK-YDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEI 106 (785)
T ss_pred HHhcCcccCCCCCHHHCCcccCCCCCCcHHHHHHHHHHHHHHhh-cCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCC
Q ss_pred CHhH--HhchhcccCcc--eeccCC-------------CCcHHHHHHHHHHhCCcEEEEecCCcchHHH-----------
Q 009394 199 TPKI--VNGIHKRGGTI--LGTSRG-------------GHDTSKIVDSIQDRGINQVYVLGGDGTQKGA----------- 250 (535)
Q Consensus 199 ~~~~--V~~i~~~GGs~--LGTsR~-------------~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A----------- 250 (535)
+.+. +.....+=++. +++--. +..+...+-.-.+..=..++|+-|||.....
T Consensus 107 s~d~~gl~~lfrqfs~pgg~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~~~d~iv~~~vGDGE~EeG~lAa~W~~~~~ 186 (785)
T PRK05261 107 TQDEEGMARLFKQFSFPGGIPSHAAPETPGSIHEGGELGYSLSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKF 186 (785)
T ss_pred CccHHHHHHHHHhccCCCCcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHcCCCCEEEEEECcCchhhhhhHHHhhhhhh
Q ss_pred -------------------------------HHHHHHHHHcCCCeeEeeeccccc-cCccCCCcccCchhHHHHHHHHHH
Q 009394 251 -------------------------------SAIFEEIRRRGLKVAVAGIPKTID-NDIPIIDKSFGFDTAVEEAQRAIS 298 (535)
Q Consensus 251 -------------------------------~~L~~~~~~~g~~i~VvgIPkTID-NDI~gtD~S~GFdTAv~~~~~ai~ 298 (535)
..|.+.++..|++ |-.|| ||+.-+... +..|++.+.+.|.
T Consensus 187 ~~~~~~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~------~i~VDG~D~~av~~a--~a~al~~~i~~i~ 258 (785)
T PRK05261 187 LNPATDGAVLPILHLNGYKIANPTILARISDEELEALFRGYGYE------PYFVEGDDPADMHQE--MAAALDTAIEEIR 258 (785)
T ss_pred cccccCCCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCe------eEEECCCCHHHHHHH--HHHHHHHHHHHHH
Q ss_pred HHHhhhhcCcce------EEEEEe
Q 009394 299 AAHVEAESFENG------IGVVKL 316 (535)
Q Consensus 299 ~i~~~A~S~~~r------v~iVEv 316 (535)
.|+..|...... +.|+++
T Consensus 259 ~iq~~Ar~~~~~~~P~wp~Ii~rT 282 (785)
T PRK05261 259 AIQKEAREGGDTTRPRWPMIVLRT 282 (785)
T ss_pred HHHHHHHhCCCCCCCCceEEEEEC
No 289
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=21.10 E-value=2.8e+02 Score=25.59 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=54.2
Q ss_pred EEEEecCCc--chHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccC-chhHHHHHHHHHHHHHhhhhcCcceEEE
Q 009394 237 QVYVLGGDG--TQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFG-FDTAVEEAQRAISAAHVEAESFENGIGV 313 (535)
Q Consensus 237 ~LvvIGGdg--S~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~G-FdTAv~~~~~ai~~i~~~A~S~~~rv~i 313 (535)
.++.+--|- +...|..|.++++++|..+.+..+++ +...| .+ |..++...++.+...-..+......++|
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~~g~~v~~~~i~~-----l~~~~--~~~F~~Gl~~Lv~~~~~~v~~~~~~~~~v~~ 96 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEEKGINVEVVEIEG-----LQTED--PEKFREGLRNLVRWVAEEVKNYKGRGYEVIF 96 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEE--------E------HHHHHHHHHHHHHHTHHHHHHHHHTT-EEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeee-----ecccc--hHHHHHHHHHHHHHHHHHHHHhhcCCCeEEE
Confidence 455555442 24457778888888888877776665 32222 22 8888888888887766554444444555
Q ss_pred EEecCCCc---cHHHHHHhHhcCCccEEecCCC
Q 009394 314 VKLMGRYS---GFIAMYATIASRDVDCCLIPES 343 (535)
Q Consensus 314 VEvMGR~s---G~LAl~aaLAs~~ad~ilIPE~ 343 (535)
- .-|++= +|+.+.+.+ - +..++||-|.
T Consensus 97 n-~TGGfK~~~~~~~~~g~~-~-~~~v~Yi~E~ 126 (136)
T PF09651_consen 97 N-ATGGFKAEIAYLTLLGML-Y-GDPVYYIFEE 126 (136)
T ss_dssp E--SSS-HHHHHHHHHHHHH-T---EEEEEETT
T ss_pred E-eCCChHHHHHHHHHHHHH-c-CCCEEEEEcC
Confidence 4 445443 555555555 3 6788999886
No 290
>PLN02161 beta-amylase
Probab=21.08 E-value=5.6e+02 Score=29.32 Aligned_cols=100 Identities=25% Similarity=0.270 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhCCcEEEE------ec--CCcc--hHHHHHHHHHHHHcCCCeeEe----------------eeccccc--
Q 009394 223 TSKIVDSIQDRGINQVYV------LG--GDGT--QKGASAIFEEIRRRGLKVAVA----------------GIPKTID-- 274 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~Lvv------IG--GdgS--~~~A~~L~~~~~~~g~~i~Vv----------------gIPkTID-- 274 (535)
++.=+..||..|++++.+ += |.+- ..+-.+|++.+++.|+++.+| -+|+-|-
T Consensus 119 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~~~ 198 (531)
T PLN02161 119 LTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGISLPLWIREI 198 (531)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCccCCHHHHhh
Confidence 556677889999999864 22 3222 345567888888888877664 2666654
Q ss_pred ----cCccCCCc---------ccCch--------hHHHHHHHHHHHHHhhhhcCc-ceEEEEEecCCCcc
Q 009394 275 ----NDIPIIDK---------SFGFD--------TAVEEAQRAISAAHVEAESFE-NGIGVVKLMGRYSG 322 (535)
Q Consensus 275 ----NDI~gtD~---------S~GFd--------TAv~~~~~ai~~i~~~A~S~~-~rv~iVEvMGR~sG 322 (535)
.||..||. |+|.| |+++...+.....++.-.... .-|-=|++=.+=||
T Consensus 199 g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~~~I~eI~VGlGP~G 268 (531)
T PLN02161 199 GDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIGNVIEEISIGLGPSG 268 (531)
T ss_pred hccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhcCceEEEEeccccCc
Confidence 38888885 88888 789999999988887755532 33555666554444
No 291
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=20.94 E-value=7.9e+02 Score=26.25 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=20.6
Q ss_pred eEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCC
Q 009394 310 GIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPF 345 (535)
Q Consensus 310 rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf 345 (535)
.+-|||+-|..-.-.. ++. .+|++++|..|-
T Consensus 150 d~viieT~Gv~qs~~~----i~~-~aD~vlvv~~p~ 180 (332)
T PRK09435 150 DVILVETVGVGQSETA----VAG-MVDFFLLLQLPG 180 (332)
T ss_pred CEEEEECCCCccchhH----HHH-hCCEEEEEecCC
Confidence 4888898887754433 233 578888886543
No 292
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=20.91 E-value=1.6e+02 Score=28.78 Aligned_cols=51 Identities=14% Similarity=0.258 Sum_probs=31.7
Q ss_pred HHHHHHhHhcCCccEEecCCCCCCCCC--cchHHHHHHHHHHhCCcEEEEEecC
Q 009394 323 FIAMYATIASRDVDCCLIPESPFYLEG--PGGLFEYIEKRLKENGHMVIVIAEG 374 (535)
Q Consensus 323 ~LAl~aaLAs~~ad~ilIPE~pf~l~~--~~~l~e~I~~rl~~~~~~vIVVaEG 374 (535)
-+++..+|+. +++++++=|---.+|. ...+.+.|++..++++..||+++--
T Consensus 153 rl~la~al~~-~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~ 205 (233)
T PRK11629 153 RVAIARALVN-NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205 (233)
T ss_pred HHHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3788889998 7999998664334542 2344455543333356777777643
No 293
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=20.73 E-value=6.3e+02 Score=25.36 Aligned_cols=100 Identities=22% Similarity=0.275 Sum_probs=57.1
Q ss_pred CCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC---CCcHHHHHHHHHHh
Q 009394 157 CPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG---GHDTSKIVDSIQDR 233 (535)
Q Consensus 157 apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~---~~d~~ki~~~l~~~ 233 (535)
.|..-...+++++.+...++..++.-+.....- -..+.......+...|+.+.+..+. ..++..++..|++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~g~~~v~iv~~~~~~-----g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l~~~ 189 (343)
T PF13458_consen 115 SPSDSQQAAALAEYLAKKLGAKKVAIVYPDDPY-----GRSLAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQLKSA 189 (343)
T ss_dssp S--HHHHHHHHHHHHHHTTTTSEEEEEEESSHH-----HHHHHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHHHHT
T ss_pred eccccHHHHHHHHHHHHHcCCcEEEEEecCchh-----hhHHHHHHHHHHhhcCceeccceecccccccchHHHHHHhhc
Confidence 445555667777765544555566655432110 0122222334455667777666543 36789999999999
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCe
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKV 264 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i 264 (535)
+.|.+++.++-.. +..+.+.+.+.++..
T Consensus 190 ~~d~v~~~~~~~~---~~~~~~~~~~~~~~~ 217 (343)
T PF13458_consen 190 GPDVVVLAGDPAD---AAAFLRQLRQLGLKP 217 (343)
T ss_dssp TTSEEEEESTHHH---HHHHHHHHHHTTGCS
T ss_pred CCCEEEEeccchh---HHHHHHHHHhhcccc
Confidence 9999666663332 234556666777654
No 294
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=20.64 E-value=1.7e+02 Score=28.68 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=37.6
Q ss_pred EecCCCccHHHHHHhHhcCCccEEecCCCCCCCCC--cchHHHHHHHHHHhCCcEEEEEecC
Q 009394 315 KLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEG--PGGLFEYIEKRLKENGHMVIVIAEG 374 (535)
Q Consensus 315 EvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~--~~~l~e~I~~rl~~~~~~vIVVaEG 374 (535)
++=|+.-=-+++..+|+. +++++++=|-.-.+|. ...+.+.|++..++.+.++|+++--
T Consensus 129 ~LS~G~~qrv~laral~~-~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 189 (232)
T PRK10771 129 QLSGGQRQRVALARCLVR-EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189 (232)
T ss_pred cCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 555555556888999998 7999998554434442 3345565665444446677777643
No 295
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=20.60 E-value=3.2e+02 Score=28.65 Aligned_cols=52 Identities=12% Similarity=0.312 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTID 274 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID 274 (535)
.++++.+..|-+ .+|.++||||--|-.+ .+|++-+++.+.+.-.|-=+.=|+
T Consensus 196 ~~RQ~a~~~la~-~vD~miVVGg~nSsNT-~rL~ei~~~~~~~t~~Ie~~~el~ 247 (280)
T TIGR00216 196 QNRQDAVKELAP-EVDLMIVIGGKNSSNT-TRLYEIAEEHGPPSYLIETAEELP 247 (280)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCchH-HHHHHHHHHhCCCEEEECChHHCC
Confidence 346677777754 5999999999999765 568888887775544444444444
No 296
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=20.53 E-value=3.4e+02 Score=27.91 Aligned_cols=51 Identities=22% Similarity=0.252 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCcEEEEe-----cCCcchHHHHHHHHHHHHcCCCeeEeeeccccccC
Q 009394 225 KIVDSIQDRGINQVYVL-----GGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDND 276 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvI-----GGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND 276 (535)
+.++..-.+|.|-.|.| +|.+++.+|..|+..+++.++++-+.|- .|+|.|
T Consensus 71 ~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~-~s~D~~ 126 (256)
T PRK03359 71 KGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGD-GSSDLY 126 (256)
T ss_pred HHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcC-ccccCC
Confidence 56666667899988887 4568899999999999988888877763 555544
No 297
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=20.43 E-value=7.2e+02 Score=23.33 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=50.2
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CCcHHH
Q 009394 147 HACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GHDTSK 225 (535)
Q Consensus 147 ~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~~k 225 (535)
+||++......|-....++++...+.. ++ .++.-. .... ......
T Consensus 1 ~i~~v~~~~~~~~~~~~~~g~~~~~~~-~g-~~~~~~--------------------------------~~~~~~~~~~~ 46 (264)
T cd06267 1 TIGVIVPDISNPFFAELLRGIEEAARE-AG-YSVLLC--------------------------------NSDEDPEKERE 46 (264)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHH-cC-CEEEEE--------------------------------cCCCCHHHHHH
Confidence 467777766778888888888777643 22 222210 0010 122346
Q ss_pred HHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 226 IVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 226 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
.++.+...++|++++.+.+.+... .+.+.+.++ +||.+
T Consensus 47 ~~~~~~~~~~d~iii~~~~~~~~~----~~~~~~~~i--pvv~~ 84 (264)
T cd06267 47 ALELLLSRRVDGIILAPSRLDDEL----LEELAALGI--PVVLV 84 (264)
T ss_pred HHHHHHHcCcCEEEEecCCcchHH----HHHHHHcCC--CEEEe
Confidence 677788889999999998876533 233445564 45554
No 298
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=20.35 E-value=1.2e+02 Score=29.18 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=30.5
Q ss_pred HHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH
Q 009394 228 DSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV 290 (535)
Q Consensus 228 ~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv 290 (535)
+.+++.+.|+||+-||-|+-.......+.++....++|+.|| |+|+..-+
T Consensus 37 ~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGI-------------ClG~Q~la 86 (187)
T PRK08007 37 ADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGV-------------CLGHQAMA 86 (187)
T ss_pred HHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEE-------------CHHHHHHH
Confidence 445667899999999999876543222222222223555655 88877544
No 299
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=20.33 E-value=8.7e+02 Score=24.28 Aligned_cols=87 Identities=17% Similarity=0.191 Sum_probs=46.6
Q ss_pred cEEEEecCCc----chHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHHHhhhhcCcceE
Q 009394 236 NQVYVLGGDG----TQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGI 311 (535)
Q Consensus 236 d~LvvIGGdg----S~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv 311 (535)
-.|++.||.+ +.+.-..+++.+.++|+.+-.+=.|.-=+++ + ...+++...+.+..+++.++...... .++
T Consensus 28 ~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~--~--~~~~~~~~~~d~~~~~~~l~~~~~g~-~~i 102 (274)
T TIGR03100 28 GVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSE--G--ENLGFEGIDADIAAAIDAFREAAPHL-RRI 102 (274)
T ss_pred eEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCC--C--CCCCHHHHHHHHHHHHHHHHhhCCCC-CcE
Confidence 4677888874 3333345677777788765444444332222 1 11355666667777777776543222 234
Q ss_pred EEEEecCCCc-cHHHHHHhH
Q 009394 312 GVVKLMGRYS-GFIAMYATI 330 (535)
Q Consensus 312 ~iVEvMGR~s-G~LAl~aaL 330 (535)
++ +|.+. |.+|+..+.
T Consensus 103 ~l---~G~S~Gg~~a~~~a~ 119 (274)
T TIGR03100 103 VA---WGLCDAASAALLYAP 119 (274)
T ss_pred EE---EEECHHHHHHHHHhh
Confidence 43 45554 445555443
No 300
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=20.25 E-value=7.4e+02 Score=27.81 Aligned_cols=103 Identities=16% Similarity=0.136 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCe-eEeeeccccccCccCCCcccCchhHHHHHHHHHHHHH
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKV-AVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAH 301 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i-~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~ 301 (535)
...+++.+++.-.+..++.|.-.|..++..|.+. |.+. .|-+=|.||.+-=..++....-.||+-.+++++...
T Consensus 253 ~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~----G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~- 327 (475)
T TIGR01303 253 MISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEA----GANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL- 327 (475)
T ss_pred HHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHh----CCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc-
Confidence 5567788887656666666656778888877653 6653 455568999876666665555566665555544321
Q ss_pred hhhhcCcceEEEEEecC--CCccHHHHHHhHhcCCccEEecCC
Q 009394 302 VEAESFENGIGVVKLMG--RYSGFIAMYATIASRDVDCCLIPE 342 (535)
Q Consensus 302 ~~A~S~~~rv~iVEvMG--R~sG~LAl~aaLAs~~ad~ilIPE 342 (535)
++.|| ..| |++|.++-. ||. |||.+.+-.
T Consensus 328 --------~~~vi-adGgi~~~~di~ka--la~-GA~~vm~g~ 358 (475)
T TIGR01303 328 --------GGHVW-ADGGVRHPRDVALA--LAA-GASNVMVGS 358 (475)
T ss_pred --------CCcEE-EeCCCCCHHHHHHH--HHc-CCCEEeech
Confidence 23333 344 677888754 455 688777643
Done!