Query 009394
Match_columns 535
No_of_seqs 303 out of 1565
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 04:12:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hig_A 6-phospho-1-fructokinas 100.0 2E-103 7E-108 843.8 31.8 424 70-505 17-455 (487)
2 1zxx_A 6-phosphofructokinase; 100.0 4.4E-87 1.5E-91 687.1 31.9 304 146-492 2-311 (319)
3 1pfk_A Phosphofructokinase; tr 100.0 5.5E-87 1.9E-91 686.6 31.7 309 146-497 3-318 (320)
4 3hno_A Pyrophosphate-dependent 100.0 6E-87 2E-91 707.9 29.8 332 145-490 3-366 (419)
5 4a3s_A 6-phosphofructokinase; 100.0 7.1E-86 2.4E-90 678.9 31.1 310 146-498 2-317 (319)
6 2f48_A Diphosphate--fructose-6 100.0 3.8E-84 1.3E-88 705.9 29.1 370 126-499 56-516 (555)
7 3o8l_A 6-phosphofructokinase, 100.0 2E-84 6.8E-89 727.2 24.0 396 74-499 318-747 (762)
8 3o8o_A 6-phosphofructokinase s 100.0 1.8E-83 6.2E-88 719.8 25.6 398 74-500 308-765 (787)
9 3o8o_B 6-phosphofructokinase s 100.0 1.2E-83 4.2E-88 721.1 24.1 398 74-500 308-755 (766)
10 3opy_B 6-phosphofructo-1-kinas 100.0 1.3E-83 4.6E-88 728.5 24.0 397 74-499 486-930 (941)
11 3opy_A 6-phosphofructo-1-kinas 100.0 9.4E-82 3.2E-86 712.0 24.7 398 74-500 513-976 (989)
12 3o8l_A 6-phosphofructokinase, 100.0 2.8E-81 9.4E-86 701.8 26.4 343 144-514 14-386 (762)
13 3o8o_B 6-phosphofructokinase s 100.0 2.2E-78 7.7E-83 678.6 30.4 339 145-514 3-376 (766)
14 3o8o_A 6-phosphofructokinase s 100.0 1.4E-78 4.9E-83 680.3 28.7 343 144-515 4-377 (787)
15 3opy_A 6-phosphofructo-1-kinas 100.0 4.4E-78 1.5E-82 682.1 29.2 343 143-514 208-581 (989)
16 3opy_B 6-phosphofructo-1-kinas 100.0 6E-78 2E-82 682.4 27.7 343 144-514 180-554 (941)
17 2an1_A Putative kinase; struct 94.7 0.043 1.5E-06 54.6 6.4 111 146-302 6-118 (292)
18 3g1w_A Sugar ABC transporter; 93.0 3.6 0.00012 39.4 16.5 174 144-364 3-185 (305)
19 2i2c_A Probable inorganic poly 92.9 0.055 1.9E-06 53.7 3.4 66 224-302 18-92 (272)
20 1z0s_A Probable inorganic poly 91.6 0.063 2.2E-06 54.0 2.1 64 223-302 42-122 (278)
21 1yt5_A Inorganic polyphosphate 84.4 0.27 9.4E-06 48.2 1.1 53 233-301 40-94 (258)
22 3l49_A ABC sugar (ribose) tran 84.3 20 0.0007 33.6 14.4 128 144-314 4-131 (291)
23 3h5o_A Transcriptional regulat 84.1 31 0.0011 33.6 16.0 169 145-364 62-237 (339)
24 3dbi_A Sugar-binding transcrip 83.3 31 0.0011 33.5 15.6 124 145-315 61-188 (338)
25 3kjx_A Transcriptional regulat 80.7 26 0.00089 34.2 14.0 85 145-269 68-153 (344)
26 3m9w_A D-xylose-binding peripl 77.6 48 0.0016 31.6 14.5 172 145-364 2-185 (313)
27 3egc_A Putative ribose operon 77.0 18 0.00063 34.1 11.2 125 144-315 7-132 (291)
28 3gbv_A Putative LACI-family tr 75.6 18 0.0006 34.2 10.6 185 144-374 7-210 (304)
29 2bon_A Lipid kinase; DAG kinas 73.4 7.5 0.00026 39.1 7.7 52 224-278 72-125 (332)
30 3pfn_A NAD kinase; structural 72.9 1.8 6E-05 45.2 2.9 125 142-302 35-163 (365)
31 2qv7_A Diacylglycerol kinase D 72.2 3.1 0.00011 41.9 4.5 52 224-278 70-121 (337)
32 3e3m_A Transcriptional regulat 72.1 47 0.0016 32.6 13.1 85 145-269 70-155 (355)
33 1u0t_A Inorganic polyphosphate 71.2 1.2 4E-05 44.8 1.1 34 232-270 73-106 (307)
34 3k4h_A Putative transcriptiona 67.4 63 0.0022 30.2 12.4 123 144-316 7-139 (292)
35 3s4y_A Thiamin pyrophosphokina 67.3 23 0.00078 34.6 9.4 102 136-246 11-134 (247)
36 3afo_A NADH kinase POS5; alpha 65.6 1.6 5.6E-05 45.7 0.8 55 233-302 113-170 (388)
37 3tb6_A Arabinose metabolism tr 65.4 73 0.0025 29.7 12.4 129 146-317 16-146 (298)
38 3s40_A Diacylglycerol kinase; 63.5 4.4 0.00015 40.3 3.5 86 222-320 52-137 (304)
39 3uug_A Multiple sugar-binding 62.5 1.1E+02 0.0037 29.2 14.0 103 144-287 2-107 (330)
40 3h75_A Periplasmic sugar-bindi 62.4 1.2E+02 0.004 29.5 15.9 93 145-279 3-98 (350)
41 2vk2_A YTFQ, ABC transporter p 62.0 1E+02 0.0035 29.2 12.9 86 145-269 2-89 (306)
42 3o74_A Fructose transport syst 59.9 1.1E+02 0.0036 28.2 15.8 166 146-363 3-176 (272)
43 3lup_A DEGV family protein; PS 59.6 46 0.0016 33.0 10.1 164 144-331 2-187 (285)
44 1jq5_A Glycerol dehydrogenase; 58.7 13 0.00045 37.9 6.1 56 222-287 74-129 (370)
45 3kke_A LACI family transcripti 57.6 92 0.0032 29.5 11.8 123 145-315 15-138 (303)
46 3qk7_A Transcriptional regulat 54.1 50 0.0017 31.3 9.1 82 222-317 53-135 (294)
47 3uhj_A Probable glycerol dehyd 53.7 17 0.00057 37.8 5.9 47 221-272 93-139 (387)
48 3lkb_A Probable branched-chain 53.7 39 0.0013 33.3 8.6 104 158-270 124-231 (392)
49 1oj7_A Hypothetical oxidoreduc 53.1 11 0.00038 39.1 4.5 53 222-274 94-162 (408)
50 1qpz_A PURA, protein (purine n 53.0 1.7E+02 0.0056 28.3 13.6 121 145-315 58-184 (340)
51 3l8m_A Probable thiamine pyrop 53.0 25 0.00086 33.4 6.7 69 177-246 22-101 (212)
52 3brq_A HTH-type transcriptiona 52.4 1.5E+02 0.005 27.5 16.5 125 144-316 18-147 (296)
53 1dbq_A Purine repressor; trans 51.9 1.5E+02 0.0051 27.5 13.5 122 145-315 7-133 (289)
54 3k9c_A Transcriptional regulat 49.9 1.7E+02 0.0057 27.5 14.3 122 145-316 12-134 (289)
55 3ox4_A Alcohol dehydrogenase 2 49.8 19 0.00065 37.1 5.6 58 221-278 75-145 (383)
56 3d8u_A PURR transcriptional re 49.0 1.6E+02 0.0055 27.0 15.4 123 146-316 4-128 (275)
57 1rrm_A Lactaldehyde reductase; 48.8 19 0.00064 36.9 5.4 54 222-275 76-144 (386)
58 3rot_A ABC sugar transporter, 47.9 1.2E+02 0.0041 28.6 10.7 88 145-269 3-92 (297)
59 2fqx_A Membrane lipoprotein TM 46.5 2.1E+02 0.0073 27.7 18.3 23 222-244 50-72 (318)
60 3iv7_A Alcohol dehydrogenase I 45.8 22 0.00074 36.6 5.3 49 222-276 76-124 (364)
61 2fep_A Catabolite control prot 44.9 2E+02 0.0068 26.9 13.0 123 145-316 16-141 (289)
62 2nrr_A Uvrabc system protein C 44.1 54 0.0018 30.3 7.1 86 220-309 60-153 (159)
63 3clk_A Transcription regulator 44.0 1.5E+02 0.0051 27.7 10.7 125 145-315 8-132 (290)
64 3hl0_A Maleylacetate reductase 43.5 28 0.00096 35.5 5.7 47 222-273 75-121 (353)
65 3bfj_A 1,3-propanediol oxidore 43.4 27 0.00091 35.8 5.5 53 222-274 80-145 (387)
66 3jzd_A Iron-containing alcohol 43.3 23 0.00079 36.3 5.0 47 222-273 77-123 (358)
67 2o20_A Catabolite control prot 42.8 2.3E+02 0.008 27.1 14.4 122 145-315 63-187 (332)
68 1o2d_A Alcohol dehydrogenase, 42.5 16 0.00054 37.4 3.6 57 222-278 86-155 (371)
69 3okf_A 3-dehydroquinate syntha 42.4 7.9 0.00027 40.5 1.4 62 222-289 108-172 (390)
70 3gv0_A Transcriptional regulat 41.2 2.3E+02 0.0077 26.4 14.2 125 144-315 7-134 (288)
71 8abp_A L-arabinose-binding pro 41.0 2.3E+02 0.0077 26.4 15.9 87 145-269 2-88 (306)
72 3rf7_A Iron-containing alcohol 40.6 26 0.00088 36.2 4.9 55 222-276 94-164 (375)
73 3vnd_A TSA, tryptophan synthas 40.0 1.5E+02 0.0051 29.1 10.1 138 223-376 5-160 (267)
74 3nav_A Tryptophan synthase alp 39.8 1.8E+02 0.006 28.7 10.7 137 223-375 7-161 (271)
75 2rgy_A Transcriptional regulat 38.9 2.4E+02 0.0084 26.2 14.2 124 145-316 8-136 (290)
76 3ipc_A ABC transporter, substr 38.9 65 0.0022 31.1 7.3 104 158-270 119-226 (356)
77 3s81_A Putative aspartate race 38.6 59 0.002 31.9 7.0 43 221-269 86-128 (268)
78 1vlj_A NADH-dependent butanol 38.6 25 0.00086 36.4 4.5 53 222-274 89-154 (407)
79 3e61_A Putative transcriptiona 38.5 1.4E+02 0.0047 27.6 9.3 121 145-315 8-129 (277)
80 3bil_A Probable LACI-family tr 38.4 1.9E+02 0.0065 28.1 10.8 123 145-315 66-191 (348)
81 2qip_A Protein of unknown func 38.3 50 0.0017 29.6 6.0 50 221-273 94-145 (165)
82 2gru_A 2-deoxy-scyllo-inosose 37.5 12 0.0004 38.5 1.7 63 222-290 79-144 (368)
83 3g85_A Transcriptional regulat 36.9 83 0.0028 29.4 7.5 125 144-316 10-135 (289)
84 3gyb_A Transcriptional regulat 36.2 2.6E+02 0.0088 25.7 13.2 130 145-326 5-141 (280)
85 1x60_A Sporulation-specific N- 35.5 51 0.0017 25.7 4.9 51 214-264 14-73 (79)
86 2hsg_A Glucose-resistance amyl 35.4 1.5E+02 0.0051 28.5 9.3 124 145-316 60-185 (332)
87 3ksm_A ABC-type sugar transpor 35.4 2.6E+02 0.0088 25.4 15.5 103 146-287 1-106 (276)
88 1ujn_A Dehydroquinate synthase 35.2 14 0.00049 37.6 1.9 50 221-273 68-120 (348)
89 3lm8_A Thiamine pyrophosphokin 35.1 1E+02 0.0035 29.4 7.9 69 178-246 26-105 (222)
90 3miz_A Putative transcriptiona 34.9 90 0.0031 29.4 7.5 124 145-316 13-139 (301)
91 2g0t_A Conserved hypothetical 34.5 3.9E+02 0.013 27.3 14.5 128 209-340 143-279 (350)
92 2pbq_A Molybdenum cofactor bio 34.4 25 0.00086 32.3 3.3 27 220-246 50-80 (178)
93 3td9_A Branched chain amino ac 34.4 2.1E+02 0.0072 27.5 10.3 106 158-270 130-237 (366)
94 2nrt_A Uvrabc system protein C 34.1 1.1E+02 0.0036 29.6 7.7 86 220-309 65-158 (220)
95 3o1i_D Periplasmic protein TOR 33.5 1.9E+02 0.0064 26.9 9.5 69 145-246 5-75 (304)
96 2rjo_A Twin-arginine transloca 33.3 3.2E+02 0.011 26.0 12.9 133 144-316 4-144 (332)
97 3cqj_A L-ribulose-5-phosphate 33.1 2.5E+02 0.0086 26.5 10.4 52 220-271 29-89 (295)
98 1uta_A FTSN, MSGA, cell divisi 32.9 50 0.0017 26.1 4.5 52 214-265 14-74 (81)
99 1xah_A Sadhqs, 3-dehydroquinat 32.3 46 0.0016 33.7 5.1 50 221-273 74-126 (354)
100 3apt_A Methylenetetrahydrofola 32.2 33 0.0011 34.5 4.0 88 179-270 44-150 (310)
101 3clh_A 3-dehydroquinate syntha 31.9 52 0.0018 33.2 5.4 50 221-273 69-121 (343)
102 3trh_A Phosphoribosylaminoimid 31.8 86 0.0029 29.2 6.4 52 214-272 41-93 (169)
103 3lkv_A Uncharacterized conserv 31.0 3.6E+02 0.012 25.8 12.5 73 143-243 6-78 (302)
104 3fst_A 5,10-methylenetetrahydr 30.5 98 0.0034 31.1 7.1 88 179-270 54-153 (304)
105 3ors_A N5-carboxyaminoimidazol 29.8 66 0.0022 29.8 5.2 53 214-273 38-91 (163)
106 1kq3_A Glycerol dehydrogenase; 29.3 28 0.00094 35.6 2.9 53 222-285 83-135 (376)
107 3nyi_A FAT acid-binding protei 28.8 72 0.0025 31.7 5.8 110 196-317 44-171 (297)
108 2h0a_A TTHA0807, transcription 28.4 2.1E+02 0.0073 26.2 8.8 79 224-317 45-123 (276)
109 2fvy_A D-galactose-binding per 28.4 3.6E+02 0.012 25.0 14.9 88 146-270 3-91 (309)
110 3ce9_A Glycerol dehydrogenase; 28.4 29 0.00098 35.0 2.8 50 222-277 77-126 (354)
111 1usg_A Leucine-specific bindin 27.9 1.8E+02 0.006 27.7 8.3 61 206-269 162-225 (346)
112 2lnd_A De novo designed protei 27.7 97 0.0033 25.7 5.3 57 206-263 23-79 (112)
113 3kuu_A Phosphoribosylaminoimid 27.5 71 0.0024 29.9 5.0 52 214-272 47-99 (174)
114 2dri_A D-ribose-binding protei 27.4 3.6E+02 0.012 24.7 15.0 126 146-315 2-130 (271)
115 4af0_A Inosine-5'-monophosphat 26.9 2.1E+02 0.0073 31.3 9.3 103 224-342 310-414 (556)
116 1ta9_A Glycerol dehydrogenase; 26.5 33 0.0011 36.3 2.9 56 223-289 135-190 (450)
117 1cz3_A Dihydrofolate reductase 26.0 27 0.00094 31.3 1.9 48 221-275 80-129 (168)
118 1vdr_A DHFR, dihydrofolate red 25.8 22 0.00076 31.9 1.3 50 222-278 81-130 (162)
119 2pn1_A Carbamoylphosphate synt 25.6 3.6E+02 0.012 25.8 10.2 39 222-261 60-98 (331)
120 3eaf_A ABC transporter, substr 25.4 2.8E+02 0.0096 27.1 9.5 106 157-270 121-232 (391)
121 3uhf_A Glutamate racemase; str 25.4 1.2E+02 0.004 30.0 6.5 97 137-269 16-116 (274)
122 3lp8_A Phosphoribosylamine-gly 25.2 3.7E+02 0.013 27.7 10.7 95 141-268 17-112 (442)
123 4b4k_A N5-carboxyaminoimidazol 25.0 63 0.0022 30.4 4.2 10 262-271 99-108 (181)
124 1wdp_A Beta-amylase; (beta/alp 24.2 2.5E+02 0.0085 30.3 9.1 85 223-307 35-168 (495)
125 2yxb_A Coenzyme B12-dependent 23.8 2.1E+02 0.0073 25.5 7.5 88 144-246 17-110 (161)
126 1fa2_A Beta-amylase; TIM barre 23.6 2.2E+02 0.0076 30.7 8.5 85 223-307 36-169 (498)
127 2fn9_A Ribose ABC transporter, 23.6 4.3E+02 0.015 24.3 15.5 86 146-269 3-89 (290)
128 3lp6_A Phosphoribosylaminoimid 23.2 76 0.0026 29.7 4.4 54 214-274 42-96 (174)
129 4evq_A Putative ABC transporte 22.9 1.4E+02 0.0049 28.7 6.7 61 206-269 175-238 (375)
130 1sg6_A Pentafunctional AROM po 22.7 63 0.0022 33.2 4.2 50 221-273 87-141 (393)
131 3l6u_A ABC-type sugar transpor 22.4 4.5E+02 0.016 24.1 12.7 104 144-288 7-112 (293)
132 2iks_A DNA-binding transcripti 22.2 4.7E+02 0.016 24.2 13.9 127 144-317 19-147 (293)
133 3hs3_A Ribose operon repressor 22.2 78 0.0027 29.6 4.4 119 144-316 9-130 (277)
134 3huu_A Transcription regulator 21.9 2.7E+02 0.0093 26.1 8.3 85 145-269 22-112 (305)
135 1iv0_A Hypothetical protein; r 21.9 72 0.0025 26.7 3.6 28 250-277 40-67 (98)
136 3hcw_A Maltose operon transcri 21.8 3.4E+02 0.012 25.3 9.0 78 223-316 57-139 (295)
137 3nkl_A UDP-D-quinovosamine 4-d 21.7 1.4E+02 0.0047 25.1 5.5 46 224-271 55-100 (141)
138 3u7q_A Nitrogenase molybdenum- 21.2 4.5E+02 0.015 27.8 10.6 149 223-414 132-291 (492)
139 3lop_A Substrate binding perip 20.0 2E+02 0.0068 27.8 7.0 61 206-269 165-228 (364)
140 4eyg_A Twin-arginine transloca 20.0 1.3E+02 0.0046 28.9 5.7 62 205-269 162-229 (368)
No 1
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=2.1e-103 Score=843.76 Aligned_cols=424 Identities=38% Similarity=0.625 Sum_probs=384.9
Q ss_pred CccccccccchhhhccCC--CCCCCCCCCCCccccccccccccChhHHHHHhhcccC-------CccccccccCCccccc
Q 009394 70 AGYVLEDVPHFSDYISDL--PTHPNPLQDNPSYSVVKQHFVDVDDSVAQNIVVHQDS-------PRGRHFRRVGPREKVY 140 (535)
Q Consensus 70 ~~~~~e~V~~l~~~~p~~--p~~~~pl~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-------~r~~~f~~agpr~~~~ 140 (535)
.-+.++.|+.+.-..|.+ |+++|||..|.. ...||++++.|+..+....+. .....|+++|||+++|
T Consensus 17 ~~~~~~~~~~~~~~i~~lg~~~~~~p~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i~ 92 (487)
T 2hig_A 17 HRAMLNSVTQEDLKVDRLPGADYPNPSKKYSS----RTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELAAARSRIH 92 (487)
T ss_dssp TTCSCSSCCTTTTCCEECSCCCEECTTCCGGG----GGGSBSSCCEEESCCCBCC-----CCBBSCCCEEEECCCBSEES
T ss_pred ccccccCCCccccccCcCCCCCCCCcccccCC----CCeeeCCCCEEEEeeeccCCCccccccccchHHHHHcCCcceee
Confidence 447789998886666766 778999977665 688999999998876542221 1234799999999999
Q ss_pred cCCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccC---CCeeeCCHhHHhchhcccCcceecc
Q 009394 141 FESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYA---RNTIPLTPKIVNGIHKRGGTILGTS 217 (535)
Q Consensus 141 ~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~---~~~~~L~~~~V~~i~~~GGs~LGTs 217 (535)
|+++.+||||+||||||||||++||++|+.+...|+..+||||++||+||++ +++++|+|++|++|+++|||+||||
T Consensus 93 f~~~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGTiLGTs 172 (487)
T 2hig_A 93 FNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSS 172 (487)
T ss_dssp SCGGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSCSSCCC
T ss_pred ecCCCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCCeeccC
Confidence 9999999999999999999999999999998766777799999999999964 6899999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHH
Q 009394 218 RGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAI 297 (535)
Q Consensus 218 R~~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai 297 (535)
|++++.++++++|++++||+||+||||||+++|++|++++.++|++|+||||||||||||++||+|||||||+++++++|
T Consensus 173 R~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~~~~eaI 252 (487)
T 2hig_A 173 RGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAI 252 (487)
T ss_dssp CSCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhCCcEEEEEecCCCc
Q 009394 298 SAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQ 377 (535)
Q Consensus 298 ~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~~~~vIVVaEGa~~ 377 (535)
+++++||.||++||||||||||+|||||+++|||+++||+|||||+||+++ +++++|++|+++++|+|||||||+++
T Consensus 253 d~i~~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~g~ad~ilIPE~p~~l~---~i~~~i~~r~~~k~~~IIvVaEGag~ 329 (487)
T 2hig_A 253 RAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFCHSRSCVIIVAEGFGQ 329 (487)
T ss_dssp HHHHHHHHTSTTEEEEEEECCSSCCHHHHHHHHHHTCCSEEECTTSCCCHH---HHHHHHHHHTTSCSEEEEEEETTTTG
T ss_pred HHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHhhCCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEeCCCcc
Confidence 999999999988999999999999999999999994499999999999988 89999999998889999999999986
Q ss_pred hhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeE---EEeeeeCCCccccCCCCCcchHHHHHHHHHHHHH
Q 009394 378 ELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMT---INLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIH 454 (535)
Q Consensus 378 ~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~---~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~ 454 (535)
.+... ...+|++||+++++++++|+++|+++++. .... +++|+++|||+|||++||++||+||++||+.||+
T Consensus 330 ~~~~~----~~~~Da~G~~~l~~i~~~l~~~i~~~~~~-~g~~~~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~AV~ 404 (487)
T 2hig_A 330 DWGRG----SGGYDASGNKKLIDIGVILTEKVKAFLKA-NKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVH 404 (487)
T ss_dssp GGCCC------CBCTTSCBCCCCHHHHHHHHHHHHHHT-TTTTSSSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHH
T ss_pred ccccc----ccccccccCcchhHHHHHHHHHHHHHHhh-cCccccccceEEccCCcCccCCCCCHHHHHHHHHHHHHHHH
Confidence 55422 23589999999999999999999999842 1111 2688999999999999999999999999999999
Q ss_pred HHHcCCCceEEEEeCCeeeeeeHHHHHhhCCcCCCChHHHHHHHHhcCCCC
Q 009394 455 GAMAGYTGFTVGPVNGRHAYIPFYRITERQNRVVITDRMWARLLSSTNQPS 505 (535)
Q Consensus 455 ~a~aG~tG~mVgi~~~~~~~iPl~~v~~~~k~v~~~~~~w~~~l~~tgqp~ 505 (535)
++++|+||+||++++++++++||+++++..|++++++.||.++++.++||.
T Consensus 405 ~l~~G~tg~mVgi~~~~i~~vPl~ev~~~~k~v~~~~~~w~~~~~~~~~~~ 455 (487)
T 2hig_A 405 EAMAGATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLG 455 (487)
T ss_dssp HHHTTEESEEEEEETTEEEEEEHHHHTTEEEEECTTSHHHHHHHHHSCCCC
T ss_pred HHHcCCCCEEEEEECCEEEEEEHHHHHccCCCcCcchHHHHHHHHHhCCcc
Confidence 999999999999999999999999999999999999999999999999986
No 2
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=4.4e-87 Score=687.09 Aligned_cols=304 Identities=28% Similarity=0.397 Sum_probs=283.0
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCC----
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGH---- 221 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~---- 221 (535)
+||||+||||||||||++||++|+.+.. + +.+||||++||+||+++++++|+|++|++|+++|||+|||||+++
T Consensus 2 k~i~IltsGGdapGmNaair~vv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 79 (319)
T 1zxx_A 2 KRIGILTSGGDAPGMNAAVRAVTRVAIA-N-GLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAEE 79 (319)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHT-T-TCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGGTSH
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHH-C-CCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCcccccCCCCccCCH
Confidence 4899999999999999999999998863 4 469999999999999999999999999999999999999999863
Q ss_pred -cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHH
Q 009394 222 -DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAA 300 (535)
Q Consensus 222 -d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 300 (535)
++++++++|++++||+||+||||||+++|++|+++ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i 153 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH------GFNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKI 153 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh------CCCEEEEeecccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999874 47899999999999999999999999999999999999
Q ss_pred HhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHh-CCcEEEEEecCCCchh
Q 009394 301 HVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE-NGHMVIVIAEGAGQEL 379 (535)
Q Consensus 301 ~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~-~~~~vIVVaEGa~~~~ 379 (535)
+++|.||+ ||||||||||+|||||+++|||+ +||+|||||+||+++ ++++.|++|+++ ++|++||||||+.+
T Consensus 154 ~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~-ga~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~~-- 226 (319)
T 1zxx_A 154 RDTASSHH-RVFIVNVMGRNCGDIAMRVGVAC-GADAIVIPERPYDVE---EIANRLKQAQESGKDHGLVVVAEGVMT-- 226 (319)
T ss_dssp HHHHHHTT-CEEEEEECCTTCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCCCEEEEEETTTCC--
T ss_pred HHHHhcCC-CEEEEEeCCCCHHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcCh--
Confidence 99999974 89999999999999999999999 799999999999987 899999999964 79999999999842
Q ss_pred hHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcC
Q 009394 380 LSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAG 459 (535)
Q Consensus 380 ~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG 459 (535)
+.+|+++|+++++. +.|+++|||+|||++|+++||.||++||..||+++++|
T Consensus 227 ----------------------~~~l~~~i~~~~~~------~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g 278 (319)
T 1zxx_A 227 ----------------------ADQFMAELKKYGDF------DVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEG 278 (319)
T ss_dssp ----------------------HHHHHHHHHHSSCC------CEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHhhCc------eEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 45789999887653 46788999999999999999999999999999999999
Q ss_pred CCceEEEEeCCeeeeeeHHHHHhhCCcCCCChH
Q 009394 460 YTGFTVGPVNGRHAYIPFYRITERQNRVVITDR 492 (535)
Q Consensus 460 ~tG~mVgi~~~~~~~iPl~~v~~~~k~v~~~~~ 492 (535)
++|+||++++++++++||+++++..|+++++..
T Consensus 279 ~~g~mv~~~~~~~~~~pl~~~~~~~k~~~~~~~ 311 (319)
T 1zxx_A 279 KGGLAVGIENGKVTSHDILDLFDESHRGDYDLL 311 (319)
T ss_dssp CCSEEEEEETTEEEEEEHHHHTTCCCCCCTHHH
T ss_pred CCCEEEEEECCEEEEEEHHHHHhcCCCCCHHHH
Confidence 999999999999999999999999999876543
No 3
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=5.5e-87 Score=686.58 Aligned_cols=309 Identities=28% Similarity=0.386 Sum_probs=284.7
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCC----
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGH---- 221 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~---- 221 (535)
+||||+||||||||||++||++|+.+.+ + +.+||||++||+||+++++++|+|++|++|+++|||+|||||+++
T Consensus 3 k~i~IltsGGdapGmNaair~vv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 80 (320)
T 1pfk_A 3 KKIGVLTSGGDAPGMNAAIRGVVRSALT-E-GLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDE 80 (320)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHH-T-TCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSH
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHH-C-CCEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCCeeccCCCCCCCCH
Confidence 4999999999999999999999998864 4 479999999999999999999999999999999999999999853
Q ss_pred -cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHH
Q 009394 222 -DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAA 300 (535)
Q Consensus 222 -d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 300 (535)
++++++++|++++||+||+||||||+++|++|+++ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 81 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i 154 (320)
T 1pfk_A 81 NIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRL 154 (320)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh------CCCEEEEeccccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999873 57899999999999999999999999999999999999
Q ss_pred HhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHh-CCcEEEEEecCCCchh
Q 009394 301 HVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE-NGHMVIVIAEGAGQEL 379 (535)
Q Consensus 301 ~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~-~~~~vIVVaEGa~~~~ 379 (535)
+++|.||+ ||||||||||+|||||+++|||+ +||+|||||+||+++ +++++|++|+++ ++|++||||||+..
T Consensus 155 ~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~-ga~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~~-- 227 (320)
T 1pfk_A 155 RDTSSSHQ-RISVVEVMGRYCGDLTLAAAIAG-GCEFVVVPEVEFSRE---DLVNEIKAGIAKGKKHAIVAITEHMCD-- 227 (320)
T ss_dssp HHHHHHHT-CEEEEEECCTTCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCSCEEEEEESSSSC--
T ss_pred HHHHhcCC-CEEEEEeCCcCHHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcch--
Confidence 99999985 89999999999999999999999 799999999999987 899999999964 78999999999841
Q ss_pred hHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcC
Q 009394 380 LSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAG 459 (535)
Q Consensus 380 ~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG 459 (535)
+++|+++|+++++. +.|+.+|||+|||++|+++||.||++||..||+++++|
T Consensus 228 ----------------------~~~la~~i~~~~~~------~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g 279 (320)
T 1pfk_A 228 ----------------------VDELAHFIEKETGR------ETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAG 279 (320)
T ss_dssp ----------------------HHHHHHHHHHHHSS------CEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------------HHHHHHHHHHHhCC------eEEEEcCCccccCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 46789999988764 46778899999999999999999999999999999999
Q ss_pred CCceEEEEeCCeeeeeeHHHHH-hhCCcCCCChHHHHHH
Q 009394 460 YTGFTVGPVNGRHAYIPFYRIT-ERQNRVVITDRMWARL 497 (535)
Q Consensus 460 ~tG~mVgi~~~~~~~iPl~~v~-~~~k~v~~~~~~w~~~ 497 (535)
++|+||++++++++++||+++. ++.|+++++...+.+.
T Consensus 280 ~~g~mv~~~~~~~~~~pl~~~~~~~~k~~~~~~~~~~~~ 318 (320)
T 1pfk_A 280 YGGRCVGIQNEQLVHHDIIDAIENMKRPFKGDWLDCAKK 318 (320)
T ss_dssp CCSEEEEEETTEEEEEEHHHHHHHCCCCCCHHHHHHHHH
T ss_pred CCCEEEEEECCEEEEEEHHHHHhhCCCCCCHHHHHHHHH
Confidence 9999999999999999999999 8888887654444433
No 4
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=6e-87 Score=707.87 Aligned_cols=332 Identities=18% Similarity=0.273 Sum_probs=289.0
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcC--CeEEEEEccccccccCCCeeeC---CHhHHhchhcccCcceeccCC
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYG--VHKVLGIEGGYRGFYARNTIPL---TPKIVNGIHKRGGTILGTSRG 219 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~--~~~V~Gi~~G~~GL~~~~~~~L---~~~~V~~i~~~GGs~LGTsR~ 219 (535)
+.||+|+||||||||||++||++|+.+.. ++ ..+||||++||+||+++++++| +|.+|++|+++|||+|||||+
T Consensus 3 ~kni~VltsGGdapGmNa~Ir~vv~~a~~-~g~~~~~V~Gi~~G~~GLl~~~~~~l~~~~~~~v~~i~~~GGtiLGSsR~ 81 (419)
T 3hno_A 3 AKNAFYAQSGGVTAVINASAAGVIEAARK-QSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSGAFGSCRY 81 (419)
T ss_dssp CCEEEEEECSSCCSSHHHHHHHHHHHHHH-HCSSCCCEEEETTTHHHHHTTCEEEGGGSCHHHHHHGGGCCSCTTCCCCC
T ss_pred CceEEEEccCCChHHHHHHHHHHHHHHHH-cCCCCcEEEEEeCChHHhCCCCcccCccccHHHHHHHHcCCCceecCCCC
Confidence 35999999999999999999999998864 33 2399999999999999999988 555899999999999999998
Q ss_pred CC--------cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHH
Q 009394 220 GH--------DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVE 291 (535)
Q Consensus 220 ~~--------d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~ 291 (535)
+. ++++++++|++++||+||+||||||+++|++|+++++++|++++||||||||||||++||+|||||||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdTA~~ 161 (419)
T 3hno_A 82 KLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAK 161 (419)
T ss_dssp C------CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchHHHH
Confidence 53 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCcc---eEEEEEecCCCccHHHHHHhHhc----CCccEEecCCCCCCCCCcchHHHHHHHHHHhC
Q 009394 292 EAQRAISAAHVEAESFEN---GIGVVKLMGRYSGFIAMYATIAS----RDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN 364 (535)
Q Consensus 292 ~~~~ai~~i~~~A~S~~~---rv~iVEvMGR~sG~LAl~aaLAs----~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~ 364 (535)
+++++|+++..++.|+++ ||||||||||+|||||+++|||+ ++||+|||||+||+++ ++++.|+++++++
T Consensus 162 ~~~~~i~~~~~d~~ss~~sh~rv~iVEvMGR~aG~lAl~aglA~~~~~~gad~ilIPE~~f~~~---~~~~~i~~~~~~~ 238 (419)
T 3hno_A 162 YIAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQ---KFLAKVDSCVKKF 238 (419)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCEEEEEECCSSCCHHHHGGGGGCCSSSCCCEEEECTTSCCCHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCcEEEEEcCCcChhHHHHHHHHhcccCCCCceEEEeCCCCCCHH---HHHHHHHHHHHhC
Confidence 999999998555444443 89999999999999999999994 2799999999999987 8999999999888
Q ss_pred CcEEEEEecCCCc---hhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCC--CCc
Q 009394 365 GHMVIVIAEGAGQ---ELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVP--SNA 439 (535)
Q Consensus 365 ~~~vIVVaEGa~~---~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~--p~a 439 (535)
+|+|||||||+.+ .++.+ ...+|++||++|++++.+|+++|+++++. ++|+++|||+|||++ ||+
T Consensus 239 ~~~iIvVaEG~~~~~g~~i~~----~~~~D~~G~~~l~gi~~~la~~i~~~~g~------~~R~~~lGh~QRgg~p~ps~ 308 (419)
T 3hno_A 239 GYCSVVVSEGVKGDDGKFLSD----QGVRDAFGHAQLGGVAPVVASMVKEGLGL------KYHWGVADYLQRAARHIASK 308 (419)
T ss_dssp SCEEEEEETTCCCSSSCC-------------------CCSHHHHHHHHHHHHCC------CEEEEECTHHHHSCGGGCBH
T ss_pred CCEEEEEeCCCcccCCcchhc----ccccccccCcccCcHHHHHHHHHHHHhCC------ceEEcccchhhccCCCCCCH
Confidence 9999999999975 33332 24589999999999999999999999874 467789999999999 899
Q ss_pred chHHHHHHHHHHHHHHHHcCCCceEEEEeCC-------eeeeeeHHHHHhhCCcCCCC
Q 009394 440 SDNVYCTLLAHSAIHGAMAGYTGFTVGPVNG-------RHAYIPFYRITERQNRVVIT 490 (535)
Q Consensus 440 ~Dr~~a~~LG~~AV~~a~aG~tG~mVgi~~~-------~~~~iPl~~v~~~~k~v~~~ 490 (535)
+||+||++||..||+++++|++|+||+++++ +++.+||+++++..|+|+++
T Consensus 309 ~Dr~la~~lG~~Av~~~~~G~~g~mv~~~~~~~~~y~~~~~~vpl~~~~~~~k~v~~~ 366 (419)
T 3hno_A 309 TDVEQAYAMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMAQLSQVANVEKMMPEN 366 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEC-CCEEEEEEEEHHHHSSCCCCCCGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccccEEEEeeHHHHhcccCCCCHH
Confidence 9999999999999999999999999999986 68999999999988887753
No 5
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=7.1e-86 Score=678.87 Aligned_cols=310 Identities=29% Similarity=0.421 Sum_probs=283.5
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCC-----
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGG----- 220 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~----- 220 (535)
.|||||||||||||||++||++|+.+.+ .+.+||||++||+||+++++++|+|++|++|+++|||+|||||++
T Consensus 2 krIgIltsGG~~pG~Na~ir~vv~~a~~--~g~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt~lgtsR~~~~~~~ 79 (319)
T 4a3s_A 2 KRIGVLTSGGDSPGMNAAVRAVVRKAIY--HDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGTKLYTARCPEFKTV 79 (319)
T ss_dssp CEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSCTTCCCCCHHHHSH
T ss_pred CEEEEECcCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCCccccCCCCccccH
Confidence 3899999999999999999999998753 457999999999999999999999999999999999999999984
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHH
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAA 300 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 300 (535)
+++++++++|++++||+||+||||||+++|++|+++ .++||||||||||||++||+|||||||+++++++|+++
T Consensus 80 e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~------~i~vigiPkTIDNDl~~td~t~GfdTA~~~~~~ai~~i 153 (319)
T 4a3s_A 80 EGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKI 153 (319)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcc------CCcEEEeeccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999863 47799999999999999999999999999999999999
Q ss_pred HhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHh-CCcEEEEEecCCCchh
Q 009394 301 HVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE-NGHMVIVIAEGAGQEL 379 (535)
Q Consensus 301 ~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~-~~~~vIVVaEGa~~~~ 379 (535)
+++|+|| +||||||+|||+|||||+++|||+ +||+|||||.||+++ ++++.|++++++ ++|++||||||+++.
T Consensus 154 ~~~a~s~-~rv~ivEvMGR~aG~lA~~a~la~-ga~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~iivvaEG~~~~- 227 (319)
T 4a3s_A 154 RDTATSH-ERTYVIEVMGRHAGDIALWAGLAG-GAESILIPEADYDMH---EIIARLKRGHERGKKHSIIIVAEGVGSG- 227 (319)
T ss_dssp HHHHHHH-TCEEEEEECCTTCCHHHHHHHHHH-TCSEEEBTTBCCCHH---HHHHHHHHHHTTTCCCEEEEEETTTCCH-
T ss_pred Hhhhhcc-CCeEEEEeCCcchhHHHHHHHhcc-CCCEEEecCCCCCHH---HHHHHHHHHHHcCCCceEEEEECCCCcc-
Confidence 9999987 579999999999999999999999 799999999999987 899999998876 689999999999752
Q ss_pred hHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcC
Q 009394 380 LSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAG 459 (535)
Q Consensus 380 ~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a~aG 459 (535)
.+++++++++++. ++|+.+|||+|||++|+++||++|++||+.||+++++|
T Consensus 228 -----------------------~~~~~~~~~~~g~------~~r~~~lGh~qRgg~psa~Dr~~a~~lG~~AV~~~~~G 278 (319)
T 4a3s_A 228 -----------------------VEFGKRIEEETNL------ETRVSVLGHIQRGGSPSAADRVLASRLGAYAVELLLEG 278 (319)
T ss_dssp -----------------------HHHHHHHHHHHCC------CEEEEECGGGGGCSSCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred -----------------------hHHHHHHHHhCCc------eEEEcchhHHHhCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 3567778888774 36778899999999999999999999999999999999
Q ss_pred CCceEEEEeCCeeeeeeHHHHHhhCCcCCCChHHHHHHH
Q 009394 460 YTGFTVGPVNGRHAYIPFYRITERQNRVVITDRMWARLL 498 (535)
Q Consensus 460 ~tG~mVgi~~~~~~~iPl~~v~~~~k~v~~~~~~w~~~l 498 (535)
+||+||++++++++++||+++++.+|+|+++.....+.|
T Consensus 279 ~~g~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~~~a~~l 317 (319)
T 4a3s_A 279 KGGRCVGIQNNKLVDHDIIEILETKHTVEQNMYQLSKEL 317 (319)
T ss_dssp CCSEEEEEETTEEEEEEHHHHSSSCCCCCHHHHHHHHHH
T ss_pred CCCeEEEEECCEEEEEeHHHHHhccCCCCHHHHHHHHhc
Confidence 999999999999999999999999999987543333333
No 6
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=3.8e-84 Score=705.86 Aligned_cols=370 Identities=23% Similarity=0.312 Sum_probs=308.6
Q ss_pred ccccccccCCccccccCCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhc
Q 009394 126 RGRHFRRVGPREKVYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNG 205 (535)
Q Consensus 126 r~~~f~~agpr~~~~~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~ 205 (535)
+..+|..+.++. -.++.+||||+||||||||||++||++|+.+...+++.+||||++||+||+++++++|+|++|++
T Consensus 56 p~~~~~~~~~~~---~~~~~~~igIltsGGdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~ 132 (555)
T 2f48_A 56 PIISFTEGESSL---SFSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINS 132 (555)
T ss_dssp CCEEEEESCCCC---SCCSCCEEEEEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHH
T ss_pred CcEEEecCCccc---ccCCCcEEEEECcCCCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHH
Confidence 445677665431 13456899999999999999999999999976667788999999999999999999999999999
Q ss_pred hhcccC-cceeccCCCC----cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCC
Q 009394 206 IHKRGG-TILGTSRGGH----DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPII 280 (535)
Q Consensus 206 i~~~GG-s~LGTsR~~~----d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gt 280 (535)
|+++|| |+|||+|++. ++++++++|++++||+||+||||||+++|++|+++++++++.|+||||||||||||+++
T Consensus 133 i~~~GGstiLGssR~~~~~~e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t 212 (555)
T 2f48_A 133 YRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRND 212 (555)
T ss_dssp HTTCCSSTTTCCBCCCCCSHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCS
T ss_pred HHhCCCCcCCCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCC
Confidence 999999 7999999853 47899999999999999999999999999999999999999999999999999999887
Q ss_pred --CcccCchhHHHHHHHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCC----CCCCC-cchH
Q 009394 281 --DKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESP----FYLEG-PGGL 353 (535)
Q Consensus 281 --D~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~p----f~l~~-~~~l 353 (535)
|+|||||||+++++++|++++.+|.|+++||||||||||+|||||+++|||+ +||+|||||+| +++++ .+.+
T Consensus 213 ~id~tiGFdTA~~~~~~aId~i~~da~s~~~rv~iVEvMGR~aG~lAl~a~LA~-gad~ilIPE~~~~~~~~L~~~~~~i 291 (555)
T 2f48_A 213 HIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSASHVALECALKT-HPNICIVSEEVLAKKKTLSEIIDEM 291 (555)
T ss_dssp SCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCTTSCHHHHHHHHHH-CCSEECCHHHHHHTTCCHHHHHHHH
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHhhc-CCCEEEecCccccccCCHHHHHHHH
Confidence 9999999999999999999999999988899999999999999999999999 79999999986 44432 1345
Q ss_pred HHHHHHHHHh-CCcEEEEEecCCCch------hhH-----------------------------------------HHhh
Q 009394 354 FEYIEKRLKE-NGHMVIVIAEGAGQE------LLS-----------------------------------------EIMH 385 (535)
Q Consensus 354 ~e~I~~rl~~-~~~~vIVVaEGa~~~------~~~-----------------------------------------~~~~ 385 (535)
++.|++|.++ ++|+|||||||+... ++. +.+.
T Consensus 292 ~~~i~~r~~~gk~~~IIvVaEG~~~~~~~~~~li~el~~~l~~~~~~~~~l~~~~~~~~~~~~Ls~~~~~~~~~lp~~i~ 371 (555)
T 2f48_A 292 VSVILKRSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQ 371 (555)
T ss_dssp HHHHHHHHHTTCCCEEEEEETTGGGTSHHHHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHcCCCcEEEEEeCCCccccchHHHHHHHHhhhhhcccccccccccccchhhhhhccchhhhhhhccchHHHH
Confidence 5566666544 689999999999531 100 0011
Q ss_pred hc-----ccccccCCccchhh--HHHHHHHHHHHhCCcc-----eeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHH
Q 009394 386 TM-----DQQDASGNKLLQDV--GLWISQKIRDHFGKKR-----KMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAI 453 (535)
Q Consensus 386 ~~-----~~~Da~Gn~~l~~i--g~~L~~~I~~~~~~~~-----~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV 453 (535)
.. ..+|++||++|+++ +++|+++|+++++.+. ...++.+...|||+|||+.|+++||+||++||+.||
T Consensus 372 ~~l~~~~~~~D~~Gn~~l~~i~t~~~L~~~v~~~l~~~~~~~~~~~~~~~r~~~lGy~qRgg~PS~~Dr~la~~lG~~Av 451 (555)
T 2f48_A 372 FELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAV 451 (555)
T ss_dssp HHHHHHHHTCCTTCCCCCTTSCHHHHHHHHHHHHHHHHHTTTCCCSCCCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhhccccccCCCCCEeeccccHHHHHHHHHHHHHHHHhcccCcccceeeeeccCCcchhCCCCCHHHHHHHHHHHHHHH
Confidence 10 25799999999998 4555555554443110 011345566799999999999999999999999999
Q ss_pred HHHHcCCCceEEEEeCCe-------eeeeeHHHHHhhC------------CcCCCChHHHHHHHH
Q 009394 454 HGAMAGYTGFTVGPVNGR-------HAYIPFYRITERQ------------NRVVITDRMWARLLS 499 (535)
Q Consensus 454 ~~a~aG~tG~mVgi~~~~-------~~~iPl~~v~~~~------------k~v~~~~~~w~~~l~ 499 (535)
+++++|+||+||+++|++ +..+||.++++.. +.|++++..|+.+.+
T Consensus 452 ~~~~~G~tG~mv~i~~~~~~~~~w~~~~vPl~~~~n~ek~~g~~~p~i~~~~Vdl~~~~f~~~~~ 516 (555)
T 2f48_A 452 VLILNGLTGYMSCIKNLNLKPTDWIAGGVPLTMLMNMEERYGEKKPVIKKALVDLEGRPFKEFVK 516 (555)
T ss_dssp HHHHTTCCSEEEEEECTTSCGGGCEEEEEEGGGGEEEEEETTEEEEEECCCCCCTTSHHHHHHHH
T ss_pred HHHHcCCCCEEEEEECCCCCccceEEEeeeHHHHhhhhhhcCccccceeeeeeCCCCHHHHHHHH
Confidence 999999999999999976 7899999988743 468888877765443
No 7
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=2e-84 Score=727.16 Aligned_cols=396 Identities=19% Similarity=0.255 Sum_probs=343.0
Q ss_pred cccccchhhhccCCCCCCCCCCCCCccccccccccccChhHHHHHhhccc-----CCccccccccC--------Cccccc
Q 009394 74 LEDVPHFSDYISDLPTHPNPLQDNPSYSVVKQHFVDVDDSVAQNIVVHQD-----SPRGRHFRRVG--------PREKVY 140 (535)
Q Consensus 74 ~e~V~~l~~~~p~~p~~~~pl~~n~~~~~~~~~~V~~t~~V~~~~~~~~~-----~~r~~~f~~ag--------pr~~~~ 140 (535)
.+||.++++..|+++.+.+.+++|+.++.|++++++.++.|..++.. ++ .+|+.+|.+++ ++...
T Consensus 318 ~~AV~~~~~g~~~~~~~~v~~~~~~i~~~Pl~e~~~~~k~v~~~~~~-~~~~~a~~~rg~~f~~~~~~~~~~~~~~~~~- 395 (762)
T 3o8l_A 318 VEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAMDE-KRFDEAMKLRGRSFMNNWEVYKLLAHIRPPA- 395 (762)
T ss_dssp HHHHHHHHTCCTTSCCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHS-SCHHHHHHHHCTHHHHHHHHHHHHHCSCCCC-
T ss_pred HHHHHHHHcCCCCCceEEEEEECCEEEEEEHHHHHhccCCCChhhcc-chHHHHHHhhCchHHHHHHHHHHhcCCCCcc-
Confidence 58999999999999999999999999999999999999999887762 33 56888898754 11111
Q ss_pred cCCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCC
Q 009394 141 FESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGG 220 (535)
Q Consensus 141 ~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~ 220 (535)
...+++||||+||||||||||++||++|+.+.. + +++||||++||+||+++++++|+|++|++|+++|||+|||+|+.
T Consensus 396 ~~~~~~~IgIltsGGdapGmNaaIravv~~~~~-~-g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGTsR~~ 473 (762)
T 3o8l_A 396 PKSGSYTVAVMNVGAPAAGMNAAVRSTVRIGLI-Q-GNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGSKLGSKRTL 473 (762)
T ss_dssp CCSSCCEEEEEEESSCCTTHHHHHHHHHHHHHH-H-TCEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSCSSCEECCC
T ss_pred ccccCCEEEEEecCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEeccccccccCCEEECCHHHhhhHHhCCCceeecCCCC
Confidence 124568999999999999999999999998863 3 57999999999999999999999999999999999999999985
Q ss_pred --CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcC-CCeeEeeeccccccCccCCCcccCchhHHHHHHHHH
Q 009394 221 --HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRG-LKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAI 297 (535)
Q Consensus 221 --~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g-~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai 297 (535)
+++++++++|++++||+||+||||||+++|.+|+++++++. ++|+||||||||||||++||+|||||||+++++++|
T Consensus 474 ~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~~~~~~ai 553 (762)
T 3o8l_A 474 PKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTTC 553 (762)
T ss_dssp SGGGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHHHHHHHHH
Confidence 47899999999999999999999999999999999988764 589999999999999999999999999999999999
Q ss_pred HHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhC-CcEEEEEecCCC
Q 009394 298 SAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN-GHMVIVIAEGAG 376 (535)
Q Consensus 298 ~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~-~~~vIVVaEGa~ 376 (535)
++++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++++.+.++++.+|++++ +++|||||||+.
T Consensus 554 d~i~~tA~ssh~rv~vVEvMGR~aG~lAl~aglA~-gad~ilIPE~~~~l~~~~~~i~~~~~r~~~~~~~~iVvvaEga~ 632 (762)
T 3o8l_A 554 DRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAA-GADAAYIFEEPFTIRDLQANVEHLVQKMKTTVKRGLVLRNEKCN 632 (762)
T ss_dssp HHHTTTTCSSSCEEEEEEECSTTCCHHHHHHHHHT-TCSEEECSSSCCCHHHHHHHHHHHHHHHTSSCSEEEEEEETTSC
T ss_pred HHHHHHHHhCCCcEEEEEeCCcchhHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHHHHHHHhcCCCceEEEEECCCC
Confidence 99999998777899999999999999999999999 7999999999999986555667777777654 789999999997
Q ss_pred chhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHHHHHHHHH
Q 009394 377 QELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGA 456 (535)
Q Consensus 377 ~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG~~AV~~a 456 (535)
..+. ++++++.++++-. .. ++.|...|||+|||+.|+++||++|++||.+||+++
T Consensus 633 ~~~~---------------------~~~~~~~~~~~~~--~~--~d~R~tvLGH~QRGG~Pta~DRilatr~g~~Av~~l 687 (762)
T 3o8l_A 633 ENYT---------------------TDFIFNLYSEEGK--GI--FDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNWM 687 (762)
T ss_dssp SSSC---------------------HHHHHHHHHHHTT--TT--CEEEEEECCCCCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccch---------------------HHHHHHHHHhhcc--CC--ceEEEeeCchhhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5432 2356666665411 11 356777899999999999999999999999999999
Q ss_pred HcC---------------CCceEEEEeCCeeeeeeHHHHHhhC--CcCCCChHHHHHHHH
Q 009394 457 MAG---------------YTGFTVGPVNGRHAYIPFYRITERQ--NRVVITDRMWARLLS 499 (535)
Q Consensus 457 ~aG---------------~tG~mVgi~~~~~~~iPl~~v~~~~--k~v~~~~~~w~~~l~ 499 (535)
++| .+|.|||+++++++++||+++.+.. ++-.|...||..+..
T Consensus 688 ~~g~~~~~~~g~~~~~~~~~~~~vg~~~~~i~~~pl~e~~~~~d~~~r~~~~~~w~~~~~ 747 (762)
T 3o8l_A 688 AGKIKESYRNGRIFANTPDSGCVLGMRKRALVFQPVTELQNQTDFEHRIPKEQWWLKLRP 747 (762)
T ss_dssp HHHHHTTBCSSSBCCCSSTTEEEEEEETTEEEEEEHHHHGGGEETTTTEESSCGGGGTHH
T ss_pred HhCccccccccccccccCCceEEEEEECCEEEEEEHHHHhhccchhhcCCCCchHHhHHH
Confidence 997 7999999999999999999987643 222356668876543
No 8
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-83 Score=719.83 Aligned_cols=398 Identities=18% Similarity=0.215 Sum_probs=341.2
Q ss_pred cccccchhhhccCCCCCCCCCCCCCccccccccccccChhHHHHHhhccc-----CCccccccccC--------Cc--cc
Q 009394 74 LEDVPHFSDYISDLPTHPNPLQDNPSYSVVKQHFVDVDDSVAQNIVVHQD-----SPRGRHFRRVG--------PR--EK 138 (535)
Q Consensus 74 ~e~V~~l~~~~p~~p~~~~pl~~n~~~~~~~~~~V~~t~~V~~~~~~~~~-----~~r~~~f~~ag--------pr--~~ 138 (535)
.+||.+|++..+++|.+++.+++|+.+++|++++|..++.|.++|.. ++ ++|+++|++++ ++ ..
T Consensus 308 ~~AV~~l~~g~~~~~~~mVg~~~~~i~~~pl~~~~~~~k~v~~~~~~-~~~~~a~~lr~~~f~~~~~~~~~~~~~~~~~~ 386 (787)
T 3o8o_A 308 VDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAIEN-KDFDKAISLRDTEFIELYENFLSTTVKDDGSE 386 (787)
T ss_dssp HHHHHHHHTCCSSCCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHT-TCHHHHHHTSCTTHHHHHHHHHHHHTCTTSCS
T ss_pred HHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhc-CCHHHHHhccCHHHHHHHHHHHHhccCCCccc
Confidence 68999999999999999999999999999999999999999999873 44 68999999876 11 11
Q ss_pred cccCCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEcccccccc-CCCeeeCCHhHHhchhcccCcceecc
Q 009394 139 VYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFY-ARNTIPLTPKIVNGIHKRGGTILGTS 217 (535)
Q Consensus 139 ~~~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~-~~~~~~L~~~~V~~i~~~GGs~LGTs 217 (535)
...+.+++||||+||||||||||++||++|+.+.. + +++||||++||+||+ ++++++|+|.+|++|+++|||+||||
T Consensus 387 ~~~~~~~~~IgIltsGGdapGmNaaIravv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~~L~~~~v~~i~~~GGt~LGTs 464 (787)
T 3o8o_A 387 LLPVSDRLNIGIVHVGAPSAALNAATRAATLYCLS-H-GHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGSEIGTN 464 (787)
T ss_dssp CCCSSCCCEEEEEEESSCCSSHHHHHHHHHHHHHH-H-TCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCTTCCB
T ss_pred cCCcccCcEEEEEccCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEccChhhhCCCCCEEECCHHHHhhhhcCCCceeccC
Confidence 22334578999999999999999999999998754 3 579999999999999 89999999999999999999999999
Q ss_pred CCC--CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcC-CCeeEeeeccccccCccCCCcccCchhHHHHHH
Q 009394 218 RGG--HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRG-LKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQ 294 (535)
Q Consensus 218 R~~--~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g-~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~ 294 (535)
|+. ++.++++++|++++||+||+||||||+++|.+|++++.+++ +.|+||||||||||||++||+|||||||+++++
T Consensus 465 R~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD~t~GfdTA~~~~~ 544 (787)
T 3o8o_A 465 RSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNALV 544 (787)
T ss_dssp CCCGGGCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCSCCBTHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCcCCCCchHHHHHHH
Confidence 984 37899999999999999999999999999999998765442 568999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHh-----CCcEEE
Q 009394 295 RAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE-----NGHMVI 369 (535)
Q Consensus 295 ~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~-----~~~~vI 369 (535)
++|++++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++.+.+.++++.++++. +.+.+|
T Consensus 545 eaid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~-ga~~iliPE~~~~~~~~~~~i~~~~~~~~~~~g~~~~~~ii 623 (787)
T 3o8o_A 545 NYTDDIKQSASATRRRVFVCEVQGGHSGYIASFTGLIT-GAVSVYTPEKKIDLASIREDITLLKENFRHDKGENRNGKLL 623 (787)
T ss_dssp HHHHHHHHHHHHHSSEEEEEEECCTTCTHHHHHHHHTT-TCSEEECSSSCCCHHHHHHHHHHHHHHHHHCCSCSSCCEEE
T ss_pred HHHHHHHHHhhccCCcEEEEEeCCCCccHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEE
Confidence 99999999998867899999999999999999999999 799999999999998433333344445531 235899
Q ss_pred EEecCCCchhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHH
Q 009394 370 VIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLA 449 (535)
Q Consensus 370 VVaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG 449 (535)
+++||+...+. +.+|++.|+++++.. ++.|...|||+|||+.|+++||++|++||
T Consensus 624 vvaEg~~~~~~---------------------~~~la~~i~~~~~~~----~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G 678 (787)
T 3o8o_A 624 VRNEQASSVYS---------------------TQLLADIISEASKGK----FGVRTAIPGHVQQGGVPSSKDRVTASRFA 678 (787)
T ss_dssp EEETTSCSSSC---------------------HHHHHHHHHHHHTTS----SEEEEEBCGGGGGCSSCCHHHHHHHHHHH
T ss_pred EEeCCccCCCC---------------------HHHHHHHHHHHhCCC----ceeEEecccccccCCCCCHHHHHHHHHHH
Confidence 99999854221 467888888875411 35677889999999999999999999999
Q ss_pred HHHHHHHHcCC---------------------------------CceEEEEeCCeeeeeeHHHHHhhC---CcCCCChHH
Q 009394 450 HSAIHGAMAGY---------------------------------TGFTVGPVNGRHAYIPFYRITERQ---NRVVITDRM 493 (535)
Q Consensus 450 ~~AV~~a~aG~---------------------------------tG~mVgi~~~~~~~iPl~~v~~~~---k~v~~~~~~ 493 (535)
.+||+++++|. ++.|||++++++++.||+++.+.. ++-.|...|
T Consensus 679 ~~Av~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~i~~~p~~~~~~~~~d~~~r~~~~~~ 758 (787)
T 3o8o_A 679 VKCIKFIEQWNKKNEASPNTDAKVLRFKFDTHGEKVPTVEHEDDSAAVICVNGSHVSFKPIANLWENETNVELRKGFEVH 758 (787)
T ss_dssp HHHHHHHHHHHHTCC--------------------------CGGGEEEEEEETTEEEEEEHHHHTTSBCTTTTCSBSCCC
T ss_pred HHHHHHHHhCcccccccccccccccccccccccccccccccCCCceEEEEEECCEEEEeeHHHHHhhccchhhCCCcChH
Confidence 99999999876 689999999999999999987532 223356668
Q ss_pred HHHHHHh
Q 009394 494 WARLLSS 500 (535)
Q Consensus 494 w~~~l~~ 500 (535)
|..+...
T Consensus 759 w~~~~~~ 765 (787)
T 3o8o_A 759 WAEYNKI 765 (787)
T ss_dssp CHHHHHH
T ss_pred HHhHHHH
Confidence 9876554
No 9
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-83 Score=721.10 Aligned_cols=398 Identities=20% Similarity=0.226 Sum_probs=340.0
Q ss_pred cccccchhhhccCCCCCCCCCCCCCccccccccccccChhHHHHHhhccc-----CCccccccccC--------C--ccc
Q 009394 74 LEDVPHFSDYISDLPTHPNPLQDNPSYSVVKQHFVDVDDSVAQNIVVHQD-----SPRGRHFRRVG--------P--REK 138 (535)
Q Consensus 74 ~e~V~~l~~~~p~~p~~~~pl~~n~~~~~~~~~~V~~t~~V~~~~~~~~~-----~~r~~~f~~ag--------p--r~~ 138 (535)
.+||.+|++..+++|.+.+.+++|+.+++|++++|..++.|.++|.. ++ ++|+++|++++ + .+.
T Consensus 308 ~~AV~~~~~g~~~~~~~mv~~~~~~i~~~pl~~~~~~~k~v~~~~~~-~~~~~a~~lr~~~f~~~~~~~~~~~~~~~~~~ 386 (766)
T 3o8o_B 308 LEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAIQA-KDFKRAMSLRDTEFIEHLNNFMAINSADHNEP 386 (766)
T ss_dssp HHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHHT-TCHHHHHHHSCTTHHHHHHHHHHHHHTTSSTT
T ss_pred HHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCccHHHHhc-CCHHHHHHccCHHHHHHHHHHHHhccCCcccc
Confidence 68999999999999999999999999999999999999999999883 44 57999999876 1 111
Q ss_pred cccCCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccC-CCeeeCCHhHHhchhcccCcceecc
Q 009394 139 VYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYA-RNTIPLTPKIVNGIHKRGGTILGTS 217 (535)
Q Consensus 139 ~~~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~-~~~~~L~~~~V~~i~~~GGs~LGTs 217 (535)
.....+.+||||+||||||||||++||++|+.+.. + +++||||++||+||++ +++.+|+|.+|++|+++|||+|||+
T Consensus 387 ~~~~~~~~~IgIltsGGdapGmNaaIravv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~~l~~~~v~~i~~~GGt~LGTs 464 (766)
T 3o8o_B 387 KLPKDKRLKIAIVNVGAPAGGINSAVYSMATYCMS-Q-GHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGSEIGTN 464 (766)
T ss_dssp CSSSSCCCEEEEEEESSCCTTHHHHHHHHHHHHHH-H-TCEEEEETTHHHHHHHHCCEEECCGGGGTTGGGCCSCTTCCC
T ss_pred cCCcccCcEEEEEecCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecChHhhCCCCceEECCHHHHhhHhhCCCceEccC
Confidence 12233458999999999999999999999997754 3 4799999999999997 7899999999999999999999999
Q ss_pred CCC---CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcC-CCeeEeeeccccccCccCCCcccCchhHHHHH
Q 009394 218 RGG---HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRG-LKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEA 293 (535)
Q Consensus 218 R~~---~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g-~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~ 293 (535)
|+. +++++++++|++++||+||+||||||+++|.+|+++.+++. +.|+||||||||||||++||+|||||||+|++
T Consensus 465 R~~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~T~GfdTA~~~~ 544 (766)
T 3o8o_B 465 RVTPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTALNAL 544 (766)
T ss_dssp CCCGGGGCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCSCCBTHHHHHHHH
T ss_pred CCCCccchHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCCCCCChhHHHHHH
Confidence 984 36889999999999999999999999999999987654332 56899999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHH-----hCCcEE
Q 009394 294 QRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLK-----ENGHMV 368 (535)
Q Consensus 294 ~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~-----~~~~~v 368 (535)
+++||+++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++.+.+.+++++++++ .+.+.+
T Consensus 545 ~~aid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~-ga~~ilIPE~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i 623 (766)
T 3o8o_B 545 MEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAV-GAQVSYVPEEGISLEQLSEDIEYLAQSFEKAEGRGRFGKL 623 (766)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEEECCTTCCHHHHHHHHHH-TCSEEECTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHHhhccCCcEEEEEeCCCchhHHHHHHHHhh-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhhhhccCCCceE
Confidence 999999999998867899999999999999999999999 79999999999999843333333344443 135689
Q ss_pred EEEecCCCchhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHH
Q 009394 369 IVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLL 448 (535)
Q Consensus 369 IVVaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~L 448 (535)
|+++||+...+. +.+|++.|+++.+.. ++.|...|||+|||+.|+++||++|++|
T Consensus 624 ivvaEg~~~~~~---------------------~~~la~~i~~~~~~~----~e~R~tvLGhiQRGG~Ps~~DR~lAtr~ 678 (766)
T 3o8o_B 624 ILKSTNASKALS---------------------ATKLAEVITAEADGR----FDAKPAYPGHVQQGGLPSPIDRTRATRM 678 (766)
T ss_dssp EEEEGGGCSSCC---------------------HHHHHHHHHHHHTTS----CEEEEEBCGGGGGCSSCCHHHHHHHHHH
T ss_pred EEEeCCcCCCCc---------------------HHHHHHHHHHHhCCC----ceEEEecccccccCCCCCHHHHHHHHHH
Confidence 999999854221 467888888875311 3567789999999999999999999999
Q ss_pred HHHHHHHHHcCC----------------------CceEEEEeCCeeeeeeHHHHHhhC---CcCCCChHHHHHHHHh
Q 009394 449 AHSAIHGAMAGY----------------------TGFTVGPVNGRHAYIPFYRITERQ---NRVVITDRMWARLLSS 500 (535)
Q Consensus 449 G~~AV~~a~aG~----------------------tG~mVgi~~~~~~~iPl~~v~~~~---k~v~~~~~~w~~~l~~ 500 (535)
|.+||+++++|. +++|||+++++++++||+++.+.. ++-.|...||..+...
T Consensus 679 G~~Av~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~~~~~~~~d~~~r~~~~~~w~~~~~~ 755 (766)
T 3o8o_B 679 AIKAVGFIKDNQAAIAEARAAEENFNADDKTISDTAAVVGVKGSHVVYNSIRQLYDYETEVSMRMPKVIHWQATRLI 755 (766)
T ss_dssp HHHHHHHHHHTSHHHHHHSSSSSTTCCCCHHHHTTSEEEECSSSCCEEEEHHHHHHHTBCGGGSSBSSCSCHHHHHH
T ss_pred HHHHHHHHHhCCcccccccccccccccccccCCCceEEEEEECCEEEEEeHHHHHhhccchhhCCCCChhHHhHHHH
Confidence 999999999999 899999999999999999987532 2333566689876543
No 10
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=1.3e-83 Score=728.51 Aligned_cols=397 Identities=19% Similarity=0.222 Sum_probs=339.9
Q ss_pred cccccchhhhccCCCCCCCCCCCCCccccccccccccChhHHHHHhhccc-----CCccccccccC----------Cccc
Q 009394 74 LEDVPHFSDYISDLPTHPNPLQDNPSYSVVKQHFVDVDDSVAQNIVVHQD-----SPRGRHFRRVG----------PREK 138 (535)
Q Consensus 74 ~e~V~~l~~~~p~~p~~~~pl~~n~~~~~~~~~~V~~t~~V~~~~~~~~~-----~~r~~~f~~ag----------pr~~ 138 (535)
.+||.++++..+++|.+++.+++|+.+++|++++|..++.|.++|.. ++ ++|+++|++++ +...
T Consensus 486 ~~AV~~l~~g~~~~~g~mVg~~~~~iv~~Pl~e~v~~~k~v~~a~~~-~~f~~a~~lr~~~f~~~~~~~~~~~~~~~~~~ 564 (941)
T 3opy_B 486 VEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQVAKSIES-RNFKKAISLRDSEFVEHMKNFISTNSADHVPP 564 (941)
T ss_dssp HHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHHT-TCHHHHHHHSCHHHHHHHHHHHHHHC-CCSCC
T ss_pred HHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCCcHHHHhc-CCHHHHHHccCHHHHHHHHHHHHhccCCCccc
Confidence 68999999999999999999999999999999999999999999883 44 57999999876 1122
Q ss_pred cccCCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEcccccccc-CCCeeeCCHhHHhchhcccCcceecc
Q 009394 139 VYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFY-ARNTIPLTPKIVNGIHKRGGTILGTS 217 (535)
Q Consensus 139 ~~~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~-~~~~~~L~~~~V~~i~~~GGs~LGTs 217 (535)
.....+++||||+||||||||||++||++|+.+.. + +++||||++||+||+ ++++++|+|.+|++|+++|||+|||+
T Consensus 565 ~~~~~~~~rIgIltsGGdapGmNaaIravv~~a~~-~-g~~V~Gi~~G~~GL~~~~~~~~L~~~~V~~i~~~GGTiLGTs 642 (941)
T 3opy_B 565 SLPLEKRKKIAIINVGAPAGGMNSAVYSMATYCMS-R-GHVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGSEIGTN 642 (941)
T ss_dssp SSCGGGCCEEEEEEESSCCTTHHHHHHHHHHHHHH-H-TCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCSSCEE
T ss_pred cCCcccCcEEEEEecCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEccchHhhCcCCcEEECCHHHHhChhhCCCcEeccC
Confidence 23334578999999999999999999999997753 3 579999999999999 79999999999999999999999999
Q ss_pred CCC---CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc-CCCeeEeeeccccccCccCCCcccCchhHHHHH
Q 009394 218 RGG---HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR-GLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEA 293 (535)
Q Consensus 218 R~~---~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~ 293 (535)
|+. +++++++++|++++||+||+||||||+++|.+|+++.+++ .+.|+||||||||||||++||+|||||||++++
T Consensus 643 R~~~~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfdTA~~~i 722 (941)
T 3opy_B 643 RTLPNDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCLNSF 722 (941)
T ss_dssp CCCTTTSCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHHHH
T ss_pred CCCcccchHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCCCCCChHHHHHHH
Confidence 973 3689999999999999999999999999999998865443 256899999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHh-----CCcEE
Q 009394 294 QRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE-----NGHMV 368 (535)
Q Consensus 294 ~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~-----~~~~v 368 (535)
+++||+++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++.+.+.+++++++++. +.+.+
T Consensus 723 ~eaid~i~~tA~ssh~RvfiVEvMGR~aG~LAl~agLA~-GAd~ilIPE~~~~l~~l~~~i~~l~~~~~~~~g~~~~~~i 801 (941)
T 3opy_B 723 MEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLAC-GAQISYVPEEGISLAQLEMDINSLKESFANDQGKTKSGRL 801 (941)
T ss_dssp HHHHHHHHHHHHHC-CEEEEEEECSTTCCHHHHHHHHHH-TCSEEECTTTCCCHHHHHHHHHHHHHHHHTCTTSCCCCEE
T ss_pred HHHHHHHHHHhhhcCCcEEEEEeCCcchhHHHHHHHHhh-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceE
Confidence 999999999998877899999999999999999999999 799999999999998433344444555641 24589
Q ss_pred EEEecCCCchhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHH
Q 009394 369 IVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLL 448 (535)
Q Consensus 369 IVVaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~L 448 (535)
|++|||+...+. +.+|++.|+++++.. ++.|...|||+|||+.|+++||++|++|
T Consensus 802 IvvaEga~~~~~---------------------~~~la~~i~~~~~~g----~e~R~tvLGHiQRGG~Psa~DRilAtr~ 856 (941)
T 3opy_B 802 ILKSENASKVLT---------------------TEVISTIIDDEASGR----FDSKTAIPGHVQQGGIPSPMDRVRASRF 856 (941)
T ss_dssp EEEEGGGCSSSC---------------------HHHHHHHHHHHHTTS----SEEEEECCCTTTTCSSCCHHHHHHHHHH
T ss_pred EEEeCCccCCCC---------------------HHHHHHHHHHHhCCC----ceeEEccccccccCCCCCHHHHHHHHHH
Confidence 999999854321 467888888875421 3567789999999999999999999999
Q ss_pred HHHHHHHHHcCC--------------------CceEEEEeCCeeeeeeHHHHHhhC---CcCCCChHHHHHHHH
Q 009394 449 AHSAIHGAMAGY--------------------TGFTVGPVNGRHAYIPFYRITERQ---NRVVITDRMWARLLS 499 (535)
Q Consensus 449 G~~AV~~a~aG~--------------------tG~mVgi~~~~~~~iPl~~v~~~~---k~v~~~~~~w~~~l~ 499 (535)
|.+||+++++|. ++.|||+++++++++||+++.+.. ++-.|...||..+..
T Consensus 857 G~~Av~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~e~~~~~~d~~~r~p~~~~w~~~~~ 930 (941)
T 3opy_B 857 AIRAVSFIERHSDRCQTFKNSISFRQTDEITSTAVVLGIHKSQLRFTPIRQLYDFESDVPRRMRKNIFWSNVRE 930 (941)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCCCCCHHHHTTEEEEEECC-CEEEEEHHHHHHTSCCTTTTCC-CCSTHHHHH
T ss_pred HHHHHHHHHhCCcccccccccccccccccCCCceEEEEEECCEEEEEEHHHHHhhccchhhcCCcchHHHhHHH
Confidence 999999999998 899999999999999999987532 223356668987654
No 11
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=9.4e-82 Score=711.96 Aligned_cols=398 Identities=18% Similarity=0.231 Sum_probs=337.3
Q ss_pred cccccchhhhccCCCCCCCCCCCCCccccccccccccChhHHHHHhhccc-----CCccccccccCC----------ccc
Q 009394 74 LEDVPHFSDYISDLPTHPNPLQDNPSYSVVKQHFVDVDDSVAQNIVVHQD-----SPRGRHFRRVGP----------REK 138 (535)
Q Consensus 74 ~e~V~~l~~~~p~~p~~~~pl~~n~~~~~~~~~~V~~t~~V~~~~~~~~~-----~~r~~~f~~agp----------r~~ 138 (535)
.+||.++++..++++.+++.+.+|+.+++|++++|..++.|.++|.. ++ ++|+++|++++. ...
T Consensus 513 ~~AV~~l~~g~~~~~g~mVgl~~~~iv~vPl~e~v~~~k~V~~a~~~-k~f~~a~~lr~~~F~~~~~~~~~~~~~~~~~~ 591 (989)
T 3opy_A 513 VDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAIEA-KDFDKALQLRDQEFATSYENFLSVSKYDDGSY 591 (989)
T ss_dssp HHHHHHHHTCCTTSCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHT-TCHHHHHHTSCHHHHHHHHHHHHHHGGGGSSS
T ss_pred HHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhc-cCHHHHHhccChHHHHHHHHHHHhccCCCccc
Confidence 68999999999999999999999999999999999999999999873 44 689999998761 111
Q ss_pred cccCCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEcccccccc-CCCeeeCCHhHHhchhcccCcceecc
Q 009394 139 VYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFY-ARNTIPLTPKIVNGIHKRGGTILGTS 217 (535)
Q Consensus 139 ~~~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~-~~~~~~L~~~~V~~i~~~GGs~LGTs 217 (535)
...+++++||||+||||||||||++||++|+.+.. .+++||||++||+||+ ++++++|+|.+|++|+++|||+||||
T Consensus 592 ~~p~~~~~rIgIltsGGdaPGmNAaIravV~~a~~--~g~~V~Gi~~G~~GLl~~~~~~~L~~~~V~~i~~~GGTiLGTs 669 (989)
T 3opy_A 592 LVPESSRLNIAIIHVGAPTSALNPATRVATLNSLA--KGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGSEIGTN 669 (989)
T ss_dssp CCCGGGCCEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEETTHHHHHHHHCCEEEECTTTTTTTTTCCSCSSCCB
T ss_pred cCCccCCceEEEEecCCCCHHHHHHHHHHHHHHHH--CCCEEEEEccChhhhcCCCcEEECCHHHhhCHhhCCCcEeccC
Confidence 22334578999999999999999999999997753 4579999999999999 99999999999999999999999999
Q ss_pred CCC--CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcC-CCeeEeeeccccccCccCCCcccCchhHHHHHH
Q 009394 218 RGG--HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRG-LKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQ 294 (535)
Q Consensus 218 R~~--~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g-~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~ 294 (535)
|+. +++++++++|++++||+||+||||||+++|.+|++++.++. ++|+||||||||||||++||+|||||||+|+++
T Consensus 670 R~~~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD~TiGFdTAvn~~~ 749 (989)
T 3opy_A 670 RSLPSDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLS 749 (989)
T ss_dssp CCCGGGGHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCcCCCChHHHHHHHH
Confidence 984 47899999999999999999999999999999998755432 568999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHh-----CCcEEE
Q 009394 295 RAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE-----NGHMVI 369 (535)
Q Consensus 295 ~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~-----~~~~vI 369 (535)
++|++++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++.+.+.+++++++++. +.+++|
T Consensus 750 eaId~i~~tA~ssh~RvfIVEVMGR~aG~LAl~agLA~-GAd~ilIPE~~f~l~~l~~~i~~l~~~~~~~~g~~~~~~II 828 (989)
T 3opy_A 750 GYCDAVKQSASASRRRTFVVEVQGGYSGYLASYAGLIT-GALAVYTPENPINLQTVQEDIELLTRTYEEDDGKNRSGKIF 828 (989)
T ss_dssp HHHHHHHHHTC-CCCSEEEEEECCTTCSHHHHHHHHHH-TCSCEECTTSCCCHHHHHHHHHHHHHHHTTCC---CCCEEE
T ss_pred HHHHHHHHHHHhcCCcEEEEEeCCcchhHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHhccCCccceEE
Confidence 99999999999877899999999999999999999999 799999999999998433334444456542 246899
Q ss_pred EEecCCCchhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCCcchHHHHHHHH
Q 009394 370 VIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLA 449 (535)
Q Consensus 370 VVaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~a~Dr~~a~~LG 449 (535)
|||||+...+. +.+|+++|+++.+.. ++.|...|||+|||+.|+++||++|++||
T Consensus 829 vvaEga~~~~~---------------------~~~la~~i~e~~~~~----~e~R~tvLGHiQRGG~Psa~DRilAtr~G 883 (989)
T 3opy_A 829 IHNEKASKVYT---------------------TDLIAAIIGEAGKGR----FESRTAVPGHVQQGKSPSSIDRVNACRLA 883 (989)
T ss_dssp EEESSSCSSSC---------------------HHHHHHHHHHTTTTT----SCEEEECCGGGGGCSSCCHHHHHHHHHHH
T ss_pred EEeCCCcCCCC---------------------HHHHHHHHHHhcCCC----ceeEecccccccCCCCCCHHHHHHHHHHH
Confidence 99999864321 468899998875311 34677899999999999999999999999
Q ss_pred HHHHHHHHcCC---------------------------------------CceEEEEeCCeeeeeeHHHHHhhC---CcC
Q 009394 450 HSAIHGAMAGY---------------------------------------TGFTVGPVNGRHAYIPFYRITERQ---NRV 487 (535)
Q Consensus 450 ~~AV~~a~aG~---------------------------------------tG~mVgi~~~~~~~iPl~~v~~~~---k~v 487 (535)
.+||++++++. +..++|+++.++.+.|+.++.... ++-
T Consensus 884 ~~Ave~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~l~~~~~d~~~r 963 (989)
T 3opy_A 884 IKCCNFIEDANFQVKHNANLSADERHLRFFYDDGVKTSAVSGKSSVIDDNTSVVIGIQGSEVTFTPVKQLWENETHHKWR 963 (989)
T ss_dssp HHHHHHHTCGGGSCCSBSCCCHHHHHHTEEEETTEEEETTTCSSCCCCGGGEEEEEEETTEEEEEEHHHHHHHSCTTTC-
T ss_pred HHHHHHHHccccccccccccccccccccccccccccccccccccccCCCCcEEEEEEECCEEEEEEHHHhhhhccchhhC
Confidence 99999999876 245899999999999999985321 223
Q ss_pred CCChHHHHHHHHh
Q 009394 488 VITDRMWARLLSS 500 (535)
Q Consensus 488 ~~~~~~w~~~l~~ 500 (535)
.|...||..+...
T Consensus 964 ~p~~~~W~~~~~~ 976 (989)
T 3opy_A 964 KGKNVHWEQLNIV 976 (989)
T ss_dssp ---CCCCHHHHHH
T ss_pred CCcChHHHhHHHH
Confidence 3556688876543
No 12
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=2.8e-81 Score=701.78 Aligned_cols=343 Identities=21% Similarity=0.333 Sum_probs=309.1
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCC--CeeeCCHhHHhchhcccCcceeccCCCC
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYAR--NTIPLTPKIVNGIHKRGGTILGTSRGGH 221 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~--~~~~L~~~~V~~i~~~GGs~LGTsR~~~ 221 (535)
+..||||+||||||||||++||++|+.+. +.+.+||||++||+||+++ ++++|+|++|++|+++|||+|||||+++
T Consensus 14 ~~krIaIltsGGdaPGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGTiLGSsR~~~ 91 (762)
T 3o8l_A 14 VGKAIAVLTSGGDAQGMNAAVRAVVRVGI--FTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGTVIGSARCKD 91 (762)
T ss_dssp SSCEEEEECCSSCCTTHHHHHHHHHHHHH--HTTCEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSCSSCCCCCCG
T ss_pred cCcEEEEEccCCCchhHhHHHHHHHHHHH--HCCCEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCccccCCCCCc
Confidence 35699999999999999999999999774 4568999999999999999 8999999999999999999999999863
Q ss_pred -----cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHH-----------------HHHcCCCeeEeeeccccccCccC
Q 009394 222 -----DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEE-----------------IRRRGLKVAVAGIPKTIDNDIPI 279 (535)
Q Consensus 222 -----d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~-----------------~~~~g~~i~VvgIPkTIDNDI~g 279 (535)
++++++++|++++||+||+||||||+++|+.|+++ +.+++..++|||||||||||+++
T Consensus 92 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~g 171 (762)
T 3o8l_A 92 FREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCG 171 (762)
T ss_dssp GGSHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCSS
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCCC
Confidence 46899999999999999999999999999988653 33456789999999999999999
Q ss_pred CCcccCchhHHHHHHHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHH
Q 009394 280 IDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEK 359 (535)
Q Consensus 280 tD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~ 359 (535)
||+|||||||+++++++|++++++|.||+ |+||||||||+|||||+++|||+ +||+|||||.||++++++.+++.|++
T Consensus 172 TD~TiGfdTA~~~i~eaid~i~~tA~Sh~-Rv~iVEvMGR~aG~LAl~aglA~-gad~ilIPE~p~~~~~~~~~~~~i~~ 249 (762)
T 3o8l_A 172 TDMTIGTDSALHRITEIVDAITTTAQSHQ-RTFVLEVMGRHCGYLALVTSLSC-GADWVFIPECPPDDNWEDHLCRRLSE 249 (762)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHTTCCSSC-CEEEEEECCSSCCHHHHHHHHHH-TCSBCCCTTSCCCSSCHHHHHHHHHH
T ss_pred CcCCcCchhHHHHHHHHHHHHHHhhhcCc-cEEEEEeCCcchhHHHHHHHHhc-CCCEEEecCCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999974 69999999999999999999999 79999999999999877789999988
Q ss_pred HHHh-CCcEEEEEecCCCchhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCCC
Q 009394 360 RLKE-NGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSN 438 (535)
Q Consensus 360 rl~~-~~~~vIVVaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p~ 438 (535)
+.++ ++|+|||||||+. |++||... +.+|++.|+++++.+ .|+..|||+|||++|+
T Consensus 250 ~~~~gk~~~iVvVaEGa~--------------d~~G~~i~---~~~l~~~i~~~~g~~------~R~tvLGh~QRgg~Ps 306 (762)
T 3o8l_A 250 TRTRGSRLNIIIVAEGAI--------------DRNGKPIT---SEGVKDLVVRRLGYD------TRVTVLGHVQRGGTPS 306 (762)
T ss_dssp HHHTTCSCCBBCEETTCC--------------CSSSCCCC---HHHHHHHHHHHTCCC------EEEECCCSSTTCSCCC
T ss_pred HHHcCCCceEEEEeCCcc--------------CCCCCCcH---HHHHHHHHHHHhCCC------cceeecCccccCCCCC
Confidence 7655 5789999999983 56777665 468999999998754 5567899999999999
Q ss_pred cchHHHHHHHHHHHHHHHHcCC---CceEEEEeCCeeeeeeHHHHHhhCCcCCC--ChHHHHHHHHhcCCCCCCChHHhh
Q 009394 439 ASDNVYCTLLAHSAIHGAMAGY---TGFTVGPVNGRHAYIPFYRITERQNRVVI--TDRMWARLLSSTNQPSFLDPKKVK 513 (535)
Q Consensus 439 a~Dr~~a~~LG~~AV~~a~aG~---tG~mVgi~~~~~~~iPl~~v~~~~k~v~~--~~~~w~~~l~~tgqp~f~~~~~~~ 513 (535)
++||++|++||.+||+++++|+ ++.||++++++++++||++++...|.|++ +...|.+.+..+|| +|..+-+.+
T Consensus 307 a~Dr~lat~lG~~AV~~~~~g~~~~~~~~v~~~~~~i~~~Pl~e~~~~~k~v~~~~~~~~~~~a~~~rg~-~f~~~~~~~ 385 (762)
T 3o8l_A 307 AFDRILGSRMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAMDEKRFDEAMKLRGR-SFMNNWEVY 385 (762)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSCCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHSSCHHHHHHHHCT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEECCEEEEEEHHHHHhccCCCChhhccchHHHHHHhhCc-hHHHHHHHH
Confidence 9999999999999999999999 89999999999999999999999898886 56789999999997 487655544
Q ss_pred h
Q 009394 514 Q 514 (535)
Q Consensus 514 ~ 514 (535)
.
T Consensus 386 ~ 386 (762)
T 3o8l_A 386 K 386 (762)
T ss_dssp H
T ss_pred H
Confidence 3
No 13
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-78 Score=678.58 Aligned_cols=339 Identities=22% Similarity=0.310 Sum_probs=295.5
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCC---eeeCCHhHHhchhcccCcceeccCCCC
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARN---TIPLTPKIVNGIHKRGGTILGTSRGGH 221 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~---~~~L~~~~V~~i~~~GGs~LGTsR~~~ 221 (535)
++||||+||||||||||++||++|+.+.. + +.+||||++||+||++++ +.+|+|++|++|+++|||+|||||+++
T Consensus 3 ~krIgIltsGGdapGmNaaIravvr~a~~-~-g~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 80 (766)
T 3o8o_B 3 QKAIAVMTSGGDAPGMNSNVRAIVRSAIF-K-GCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGTNIGTARCME 80 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHHH-H-TCEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CcEEEEEeeCCCchhHHHHHHHHHHHHHH-C-CCEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCceeccCCCCc
Confidence 46999999999999999999999998864 4 469999999999999986 789999999999999999999999853
Q ss_pred -----cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHH-----------------HHHcCCCeeEeeeccccccCccC
Q 009394 222 -----DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEE-----------------IRRRGLKVAVAGIPKTIDNDIPI 279 (535)
Q Consensus 222 -----d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~-----------------~~~~g~~i~VvgIPkTIDNDI~g 279 (535)
++.+++++|++++||+||+||||||+++|++|+++ ..+++..++|||||||||||+++
T Consensus 81 ~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~g 160 (766)
T 3o8o_B 81 FKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMST 160 (766)
T ss_dssp GGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCC
Confidence 35789999999999999999999999999987653 33446678999999999999999
Q ss_pred CCcccCchhHHHHHHHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHH
Q 009394 280 IDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEK 359 (535)
Q Consensus 280 tD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~ 359 (535)
||+|||||||+++++++|++++++|.||+ ||||||||||+|||||+++|||+ +||+|||||.||+++ ++++.|++
T Consensus 161 TD~TiGfdTA~~~i~eaid~i~~tA~Sh~-RvfvVEvMGR~aG~LAl~aglA~-gAd~ilIPE~p~~~~---~~~~~v~~ 235 (766)
T 3o8o_B 161 TDATIGAYSALDRICKAIDYVEATANSHS-RAFVVEVMGRNCGWLALLAGIAT-SADYIFIPEKPATSS---EWQDQMCD 235 (766)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEECCTTCCHHHHHHHHHH-TCSEEECTTCCCCTT---HHHHHHHH
T ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhccC-ceEEEEcCCcchhHHHHHHHHhc-CCCEEEccCCCCChH---HHHHHHHH
Confidence 99999999999999999999999999974 79999999999999999999999 799999999999987 44444444
Q ss_pred HHH----h-CCcEEEEEecCCCchhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccC
Q 009394 360 RLK----E-NGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRA 434 (535)
Q Consensus 360 rl~----~-~~~~vIVVaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg 434 (535)
.++ + ++|+|||||||+.+.. |+.. .+.+|++.|+++++.+ .|+..|||+|||
T Consensus 236 ~i~~~~~~gk~~~IVvVaEGa~~~~--------------~~~~---~~~~l~~~i~~~~g~~------~R~tvLGh~QRG 292 (766)
T 3o8o_B 236 IVSKHRSRGKRTTIVVVAEGAIAAD--------------LTPI---SPSDVHKVLVDRLGLD------TRITTLGHVQRG 292 (766)
T ss_dssp HHHHHHHTTCCCEEEEEETTCBCTT--------------SCBC---CHHHHHHHHHHTTCCC------EEEEECGGGGTC
T ss_pred HHHHHHhcCCCceEEEEeCCccccc--------------CCcc---hHHHHHHHHHHHhCCc------eeEcccChhhcC
Confidence 332 2 5799999999996532 2221 1568889998887644 566789999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHcCCC---ceEEEEeCCeeeeeeHHHHHhhCCcCC--CChHHHHHHHHhcCCCCCCCh
Q 009394 435 VPSNASDNVYCTLLAHSAIHGAMAGYT---GFTVGPVNGRHAYIPFYRITERQNRVV--ITDRMWARLLSSTNQPSFLDP 509 (535)
Q Consensus 435 ~~p~a~Dr~~a~~LG~~AV~~a~aG~t---G~mVgi~~~~~~~iPl~~v~~~~k~v~--~~~~~w~~~l~~tgqp~f~~~ 509 (535)
++|+++||++|++||.+||+++++|.+ |.||++++++++++||++++...|.|. .+...|.+.++..| ++|..+
T Consensus 293 G~Psa~DR~lAt~~G~~AV~~~~~g~~~~~~~mv~~~~~~i~~~pl~~~~~~~k~v~~~~~~~~~~~a~~lr~-~~f~~~ 371 (766)
T 3o8o_B 293 GTAVAYDRILATLQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAIQAKDFKRAMSLRD-TEFIEH 371 (766)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHSC-TTHHHH
T ss_pred CCCChhhHHHHHHHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCccHHHHhcCCHHHHHHccC-HHHHHH
Confidence 999999999999999999999999997 899999999999999999998888776 35668899988866 789877
Q ss_pred HHhhh
Q 009394 510 KKVKQ 514 (535)
Q Consensus 510 ~~~~~ 514 (535)
-+.+.
T Consensus 372 ~~~~~ 376 (766)
T 3o8o_B 372 LNNFM 376 (766)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 14
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-78 Score=680.29 Aligned_cols=343 Identities=23% Similarity=0.318 Sum_probs=295.3
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCC--CeeeCCHhHHhchhcccCcceeccCCCC
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYAR--NTIPLTPKIVNGIHKRGGTILGTSRGGH 221 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~--~~~~L~~~~V~~i~~~GGs~LGTsR~~~ 221 (535)
+++||||+||||||||||++||++|+.+.. + +.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|+++
T Consensus 4 ~~krIgIltsGGdaPGmNaaIravvr~a~~-~-g~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 81 (787)
T 3o8o_A 4 KKKKIAVMTSGGDSPGMNAAVRAVVRTGIH-F-GCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGTLIGTARSME 81 (787)
T ss_dssp -CCEEEEEEESSCCTTHHHHHHHHHHHHHH-T-TCEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CCcEEEEEeeCCCchhHHHHHHHHHHHHHH-C-CCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCceeccCCCCc
Confidence 457999999999999999999999998853 4 57999999999999988 6899999999999999999999999853
Q ss_pred -----cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHH-------H----------HHcCCCeeEeeeccccccCccC
Q 009394 222 -----DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEE-------I----------RRRGLKVAVAGIPKTIDNDIPI 279 (535)
Q Consensus 222 -----d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~-------~----------~~~g~~i~VvgIPkTIDNDI~g 279 (535)
++.+++++|++++||+||+||||||+++|.+|+++ + .+++..++|||||||||||+++
T Consensus 82 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~g 161 (787)
T 3o8o_A 82 FRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSG 161 (787)
T ss_dssp GGSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCC
Confidence 35789999999999999999999999999987642 2 2235679999999999999999
Q ss_pred CCcccCchhHHHHHHHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCc-chHHHHHH
Q 009394 280 IDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGP-GGLFEYIE 358 (535)
Q Consensus 280 tD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~-~~l~e~I~ 358 (535)
||+|||||||+++++++|++++++|.|| +||||||||||+|||||+++|||+ +||+|||||+||+++++ +.+.+.++
T Consensus 162 TD~TiGfdTAl~~i~eaid~i~~tA~Sh-~RvfvVEVMGR~aG~LAl~agLA~-gAd~ilIPE~p~~~~~~~~~v~~~i~ 239 (787)
T 3o8o_A 162 TDSTIGAYSALERICEMVDYIDATAKSH-SRAFVVEVMGRHCGWLALMAGIAT-GADYIFIPERAVPHGKWQDELKEVCQ 239 (787)
T ss_dssp SSCCEEHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCTTCCHHHHHHHHHT-TCSEEECGGGCBCTTTHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCcchhHHHHHHHHhh-CCCEEEeCCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999996 579999999999999999999999 79999999999999842 23334444
Q ss_pred HHHHh-CCcEEEEEecCCCchhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCCC
Q 009394 359 KRLKE-NGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPS 437 (535)
Q Consensus 359 ~rl~~-~~~~vIVVaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~p 437 (535)
++.++ ++|+|||||||+.+.. |+.. .+..+++.|++ ++.+ .|...|||+|||++|
T Consensus 240 ~~~~~gk~~~IVvVaEGa~~~~--------------~~~~---~~~~~~~~i~~-~g~~------~R~tvLGh~QRGG~P 295 (787)
T 3o8o_A 240 RHRSKGRRNNTIIVAEGALDDQ--------------LNPV---TANDVKDALIE-LGLD------TKVTILGHVQRGGTA 295 (787)
T ss_dssp HHHHTTCCCEEEEEETTCBBTT--------------SCBC---CHHHHHHHHHH-HTCC------EEEEECGGGGTCSCC
T ss_pred HHHhcCCCceEEEEeCCCcccc--------------Ccch---hHHHHHHHHHH-hCCc------ceeeccCHhhcCCCC
Confidence 43322 5799999999997532 2221 13567888887 6644 455679999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHcCCC---ceEEEEeCCeeeeeeHHHHHhhCCcCC--CChHHHHHHHHhcCCCCCCChHHh
Q 009394 438 NASDNVYCTLLAHSAIHGAMAGYT---GFTVGPVNGRHAYIPFYRITERQNRVV--ITDRMWARLLSSTNQPSFLDPKKV 512 (535)
Q Consensus 438 ~a~Dr~~a~~LG~~AV~~a~aG~t---G~mVgi~~~~~~~iPl~~v~~~~k~v~--~~~~~w~~~l~~tgqp~f~~~~~~ 512 (535)
+++||++|++||.+||+++++|.+ |.|||+++++++++||++++.+.|.|. .+...|.+.++..| ++|..+-+.
T Consensus 296 sa~DRilAtrlG~~AV~~l~~g~~~~~~~mVg~~~~~i~~~pl~~~~~~~k~v~~~~~~~~~~~a~~lr~-~~f~~~~~~ 374 (787)
T 3o8o_A 296 VAHDRWLATLQGVDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAIENKDFDKAISLRD-TEFIELYEN 374 (787)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCSSCCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHTSC-TTHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhcCCHHHHHhccC-HHHHHHHHH
Confidence 999999999999999999999997 799999999999999999999888888 67789999999866 799887666
Q ss_pred hhh
Q 009394 513 KQS 515 (535)
Q Consensus 513 ~~~ 515 (535)
+..
T Consensus 375 ~~~ 377 (787)
T 3o8o_A 375 FLS 377 (787)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 15
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=4.4e-78 Score=682.10 Aligned_cols=343 Identities=21% Similarity=0.306 Sum_probs=294.2
Q ss_pred CCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCC--CeeeCCHhHHhchhcccCcceeccCCC
Q 009394 143 SDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYAR--NTIPLTPKIVNGIHKRGGTILGTSRGG 220 (535)
Q Consensus 143 ~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~--~~~~L~~~~V~~i~~~GGs~LGTsR~~ 220 (535)
...+||||+||||||||||++||++|+.+.. + +.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|++
T Consensus 208 ~~~krIaIlTSGGdaPGmNAaIRaVVr~a~~-~-G~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGTiLGTsR~~ 285 (989)
T 3opy_A 208 EGKKKIAIITSGGDAPGMNAAVRAVTRAGIF-Y-GCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCK 285 (989)
T ss_dssp CCSEEEEEEECSSCCTTHHHHHHHHHHHHHH-T-TEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSCSSCCCCSS
T ss_pred ccCCEEEEEeeCCCchhHHHHHHHHHHHHHH-C-CCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCccccCCCCC
Confidence 3467999999999999999999999998853 4 57999999999999998 589999999999999999999999985
Q ss_pred C-----cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHH-------H----------HHcCCCeeEeeeccccccCcc
Q 009394 221 H-----DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEE-------I----------RRRGLKVAVAGIPKTIDNDIP 278 (535)
Q Consensus 221 ~-----d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~-------~----------~~~g~~i~VvgIPkTIDNDI~ 278 (535)
+ ++++++++|++++||+||+||||||+++|++|+++ + .+++..++||||||||||||+
T Consensus 286 ~f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~ 365 (989)
T 3opy_A 286 EFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMC 365 (989)
T ss_dssp STTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCT
T ss_pred cccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCC
Confidence 3 36799999999999999999999999999998753 1 223467999999999999999
Q ss_pred CCCcccCchhHHHHHHHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHH-HHH
Q 009394 279 IIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLF-EYI 357 (535)
Q Consensus 279 gtD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~-e~I 357 (535)
+||+|||||||+++++++|++++++|.|| +||||||||||+|||||+++|||+ +||+|||||+||+++++.+.+ +.+
T Consensus 366 gTD~TiGFdTAl~~i~eaId~I~~TA~Sh-~RvfVVEVMGR~aG~LAl~agLA~-GAd~IlIPE~pf~l~~~~~~l~~~i 443 (989)
T 3opy_A 366 GTDSTIGAYSSLERIIELVDYIDATAASH-SRAFVVEVMGRHCGWLGLMSGIAT-GADYIFIPERPPSESNWKDDLKKVC 443 (989)
T ss_dssp TCSCCEEHHHHHHHHHHHHHHHHSSCCCT-TEEEEEECCCSSCTHHHHHHHHHH-TCSEEECTTSCCCTTTHHHHHHHHH
T ss_pred CCCCCCChhhHHHHHHHHHHHHHhhhhcc-CceEEEEcCCCchhHHHHHHHHhc-CCCEEEeCCCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999986 579999999999999999999999 799999999999998533333 333
Q ss_pred HHHHHh-CCcEEEEEecCCCchhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCC
Q 009394 358 EKRLKE-NGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVP 436 (535)
Q Consensus 358 ~~rl~~-~~~~vIVVaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~ 436 (535)
+++.++ ++|+|||||||+.+.. ++.. .+..+++.|++ ++. .+|...|||+|||++
T Consensus 444 ~k~~~~Gk~~~IVVVAEGa~~~~--------------~~~i---~~~~l~~~l~~-~G~------dtR~tvLGHiQRGG~ 499 (989)
T 3opy_A 444 LRHREKGRRKTTVIVAEGAIDDQ--------------LNPI---TSEEVKDVLVE-IGL------DTRITRLGHVQRGGA 499 (989)
T ss_dssp HHHHHTTCCEEEEEECTTCBCTT--------------SCBC---CHHHHHHHHHT-TTC------EEEEEECGGGGGCSC
T ss_pred HHHHhcCCCceEEEEeCCccccc--------------cccc---hHHHHHHHHHH-hCc------chhhhhhhHHHcCCC
Confidence 333222 4699999999997532 2211 13467777776 553 456678999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHcCCC---ceEEEEeCCeeeeeeHHHHHhhCCcCC--CChHHHHHHHHhcCCCCCCChHH
Q 009394 437 SNASDNVYCTLLAHSAIHGAMAGYT---GFTVGPVNGRHAYIPFYRITERQNRVV--ITDRMWARLLSSTNQPSFLDPKK 511 (535)
Q Consensus 437 p~a~Dr~~a~~LG~~AV~~a~aG~t---G~mVgi~~~~~~~iPl~~v~~~~k~v~--~~~~~w~~~l~~tgqp~f~~~~~ 511 (535)
|+++||++|++||.+||+++++|.+ |+|||+++++++++||++++.+.|.|. .+.+.|.+.++..| ++|..+-+
T Consensus 500 Psa~DRilAtrlG~~AV~~l~~g~~~~~g~mVgl~~~~iv~vPl~e~v~~~k~V~~a~~~k~f~~a~~lr~-~~F~~~~~ 578 (989)
T 3opy_A 500 PCAFDRFLATVQGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAIEAKDFDKALQLRD-QEFATSYE 578 (989)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCTTSCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHTSC-HHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhccCHHHHHhccC-hHHHHHHH
Confidence 9999999999999999999999986 899999999999999999999888888 66789999999866 78877666
Q ss_pred hhh
Q 009394 512 VKQ 514 (535)
Q Consensus 512 ~~~ 514 (535)
.+.
T Consensus 579 ~~~ 581 (989)
T 3opy_A 579 NFL 581 (989)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 16
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=6e-78 Score=682.44 Aligned_cols=343 Identities=23% Similarity=0.325 Sum_probs=294.9
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCC---eeeCCHhHHhchhcccCcceeccCCC
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARN---TIPLTPKIVNGIHKRGGTILGTSRGG 220 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~---~~~L~~~~V~~i~~~GGs~LGTsR~~ 220 (535)
+.+||||+||||||||||++||++|+.+.. + +.+||||++||+||++++ +.+|+|++|++|+++|||+|||+|++
T Consensus 180 ~~krIgIlTsGGdaPGmNAaIRaVVr~a~~-~-g~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGTiLGSsR~~ 257 (941)
T 3opy_B 180 VRKTIGVMTSGGDSPGMNPFVRAVVRAGIY-K-GCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCK 257 (941)
T ss_dssp CCCCEEEEECSSCCTTHHHHHHHHHHHHHH-T-TCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSCSSCCCCCS
T ss_pred cCCEEEEEeeCcCchhHHHHHHHHHHHHHH-C-CCEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCceeccCCCC
Confidence 467999999999999999999999998853 4 569999999999999986 78999999999999999999999985
Q ss_pred C-----cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHH-----------------HHHHcCCCeeEeeeccccccCcc
Q 009394 221 H-----DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFE-----------------EIRRRGLKVAVAGIPKTIDNDIP 278 (535)
Q Consensus 221 ~-----d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~-----------------~~~~~g~~i~VvgIPkTIDNDI~ 278 (535)
+ ++.+++++|++++||+||+||||||+++|.+|++ +..+++..++|||||||||||++
T Consensus 258 ~f~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~ 337 (941)
T 3opy_B 258 EFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMS 337 (941)
T ss_dssp GGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCS
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCC
Confidence 3 3568999999999999999999999999998764 34455678999999999999999
Q ss_pred CCCcccCchhHHHHHHHHHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCc-chHHHHH
Q 009394 279 IIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGP-GGLFEYI 357 (535)
Q Consensus 279 gtD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~-~~l~e~I 357 (535)
+||+|||||||+++++++|++++++|.|| +||||||||||+|||||+++|||+ +||+|||||.||++++. +.+++.+
T Consensus 338 gTD~TiGfdTAv~~i~eaId~I~~tA~Sh-~RvfvVEVMGR~aG~LAl~agLA~-GAd~IlIPE~p~~~~~~~~~v~~~i 415 (941)
T 3opy_B 338 STDATIGAFSSLDRICRAIDYIDATANSH-SRAFIVEVMGRHCGWLGLLAGLAT-SADYILIPEKPASSREWQDQMCDIV 415 (941)
T ss_dssp SCSSCEEHHHHHHHHHHHHHHHHSCC-CC-SEEEEEECCCSSCCHHHHHHHHHT-TCSEEECTTSCCCSSCHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCCcccHHHHHHHHhc-CCCEEEECCCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999987 579999999999999999999999 79999999999999742 2344444
Q ss_pred HHHHH-hCCcEEEEEecCCCchhhHHHhhhcccccccCCccchhhHHHHHHHHHHHhCCcceeEEEeeeeCCCccccCCC
Q 009394 358 EKRLK-ENGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVP 436 (535)
Q Consensus 358 ~~rl~-~~~~~vIVVaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~ig~~L~~~I~~~~~~~~~~~~~lkyidpgy~qRg~~ 436 (535)
+++.+ .++|+|||||||+.+.. |+.. .+.++++.|+++++. .+|...|||+|||++
T Consensus 416 ~~~~~~gk~~~IVVVAEGa~~~~--------------~~~i---~~~~l~~~i~~~~g~------d~R~tvLGhiQRGG~ 472 (941)
T 3opy_B 416 GKHRARGKRKTIVIVAEGAISND--------------LSPI---SCDQVKDVLVNRLGL------DTRVTTLGHVQRGGT 472 (941)
T ss_dssp HHHHHHTCCCEEEEECTTCBCTT--------------CCBC---CHHHHHHHHHHTSCC------EEEEEECGGGGTCSC
T ss_pred HHHHhcCCCcEEEEEeCCccccc--------------CCcc---hHHHHHHHHHHHhCC------ceeecccChhhcCCC
Confidence 44433 35799999999996432 2221 156788888887764 456678999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHcCCC---ceEEEEeCCeeeeeeHHHHHhhCCcCC--CChHHHHHHHHhcCCCCCCChHH
Q 009394 437 SNASDNVYCTLLAHSAIHGAMAGYT---GFTVGPVNGRHAYIPFYRITERQNRVV--ITDRMWARLLSSTNQPSFLDPKK 511 (535)
Q Consensus 437 p~a~Dr~~a~~LG~~AV~~a~aG~t---G~mVgi~~~~~~~iPl~~v~~~~k~v~--~~~~~w~~~l~~tgqp~f~~~~~ 511 (535)
|+++||++|++||.+||+++++|.+ |.|||+++++++++||++++.+.|.|. .+...|.+.++..| ++|...-+
T Consensus 473 Psa~DRilAtrlG~~AV~~l~~g~~~~~g~mVg~~~~~iv~~Pl~e~v~~~k~v~~a~~~~~f~~a~~lr~-~~f~~~~~ 551 (941)
T 3opy_B 473 AVAFDRIYATLQGVEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQVAKSIESRNFKKAISLRD-SEFVEHMK 551 (941)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHSC-HHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCCcHHHHhcCCHHHHHHccC-HHHHHHHH
Confidence 9999999999999999999999997 799999999999999999998888776 34567888888866 68877665
Q ss_pred hhh
Q 009394 512 VKQ 514 (535)
Q Consensus 512 ~~~ 514 (535)
.+.
T Consensus 552 ~~~ 554 (941)
T 3opy_B 552 NFI 554 (941)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 17
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=94.67 E-value=0.043 Score=54.60 Aligned_cols=111 Identities=19% Similarity=0.153 Sum_probs=60.2
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHH
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSK 225 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~k 225 (535)
.|++|+.-.+ .+..+..++.+.+.+.. . +.+++......+++-. .|. .. ...+.
T Consensus 6 kki~ii~np~-~~~~~~~~~~i~~~l~~-~-g~~v~~~~~~~~~~~~-----------------~~~----~~--~~~~~ 59 (292)
T 2an1_A 6 KCIGIVGHPR-HPTALTTHEMLYRWLCD-Q-GYEVIVEQQIAHELQL-----------------KNV----PT--GTLAE 59 (292)
T ss_dssp CEEEEECC--------CHHHHHHHHHHH-T-TCEEEEEHHHHHHTTC-----------------SSC----CE--ECHHH
T ss_pred cEEEEEEcCC-CHHHHHHHHHHHHHHHH-C-CCEEEEecchhhhccc-----------------ccc----cc--cchhh
Confidence 3799998755 36777888888887754 3 3567655444333210 010 00 01111
Q ss_pred HHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH--HHHHHHHHHHHh
Q 009394 226 IVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV--EEAQRAISAAHV 302 (535)
Q Consensus 226 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~ 302 (535)
...+.|.+|++|||||+..|..... +..++++|||. | |.||-|.+ +.+.++++.+..
T Consensus 60 -----~~~~~D~vi~~GGDGT~l~a~~~~~-----~~~~P~lGI~~-------G---t~gfla~~~~~~~~~al~~i~~ 118 (292)
T 2an1_A 60 -----IGQQADLAVVVGGDGNMLGAARTLA-----RYDINVIGINR-------G---NLGFLTDLDPDNALQQLSDVLE 118 (292)
T ss_dssp -----HHHHCSEEEECSCHHHHHHHHHHHT-----TSSCEEEEBCS-------S---SCCSSCCBCTTSHHHHHHHHHT
T ss_pred -----cccCCCEEEEEcCcHHHHHHHHHhh-----cCCCCEEEEEC-------C---CcccCCcCCHHHHHHHHHHHHc
Confidence 2346899999999999977654321 23578999982 2 34554444 334555665544
No 18
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=92.95 E-value=3.6 Score=39.36 Aligned_cols=174 Identities=9% Similarity=0.032 Sum_probs=93.9
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CCc
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GHD 222 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d 222 (535)
+..+|+++.....-|=...++.++.+.+.. ++ .++.-+ ..+.. ...
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~ 49 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQA-LN-VTVEYR-------------------------------GAAQYDIQE 49 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHH-HT-CEEEEE-------------------------------ECSSSCHHH
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHH-cC-CEEEEe-------------------------------CCCcCCHHH
Confidence 456899999888889889999998887754 33 233211 11111 122
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCC--CcccCchhHHHHHHHHHHHH
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPII--DKSFGFDTAVEEAQRAISAA 300 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gt--D~S~GFdTAv~~~~~ai~~i 300 (535)
..+.++.+...++|++++.+.+.... ....+.+.+.+ ++||. +|++++.. ..++++|-. +....+.+.+
T Consensus 50 ~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~----~~~~~~~~~~~~~V~~d~~-~~g~~~~~~l 120 (305)
T 3g1w_A 50 QITVLEQAIAKNPAGIAISAIDPVEL--TDTINKAVDAG--IPIVL----FDSGAPDSHAHSFLGTNNY-NAGMNAAYKM 120 (305)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSTTTT--HHHHHHHHHTT--CCEEE----ESSCCTTSCCSCEEECCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEcCCCHHHH--HHHHHHHHHCC--CcEEE----ECCCCCCCceeEEECcCHH-HHHHHHHHHH
Confidence 44677888889999999998776521 12234444556 45664 45555442 346666642 2223333444
Q ss_pred HhhhhcCcceEEEEEecC------CCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhC
Q 009394 301 HVEAESFENGIGVVKLMG------RYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN 364 (535)
Q Consensus 301 ~~~A~S~~~rv~iVEvMG------R~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~ 364 (535)
......+ ++|.++--.+ |..||........- ..+.+.+.+..++.+ .-.+.+++-++++
T Consensus 121 ~~~~~g~-~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 185 (305)
T 3g1w_A 121 AELLDGE-GEVAVITLPNQLNHQERTTGFKETLEAEFP-AIEVIAVEDGRGDSL---HSRRVAHQLLEDY 185 (305)
T ss_dssp HHHTTTC-EEEEEEECTTCHHHHHHHHHHHHHHHHHCT-TEEEEEEEECTTCHH---HHHHHHHHHHHHC
T ss_pred HHHhCCC-cEEEEEeCCCcccHHHHHHHHHHHHHhhCC-CCEEEEEecCCCCHH---HHHHHHHHHHHhC
Confidence 4333343 5788886443 33355543322111 233444444444433 4455566666554
No 19
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=92.89 E-value=0.055 Score=53.67 Aligned_cols=66 Identities=23% Similarity=0.285 Sum_probs=39.9
Q ss_pred HHHHHHHHHhC-------CcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH--HHHH
Q 009394 224 SKIVDSIQDRG-------INQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV--EEAQ 294 (535)
Q Consensus 224 ~ki~~~l~~~~-------Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv--~~~~ 294 (535)
+++.+.|++++ .|.+|++|||||+..|.... ....-+++++|||. | +.||-|.+ +.+.
T Consensus 18 ~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~---~~~~~~~PilGIn~-------G---~lgfl~~~~~~~~~ 84 (272)
T 2i2c_A 18 LNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQY---EERLDEIAFIGIHT-------G---HLGFYADWRPAEAD 84 (272)
T ss_dssp HHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHT---GGGTTTCEEEEEES-------S---SCCSSCCBCGGGHH
T ss_pred HHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHH---hhcCCCCCEEEEeC-------C---CCCcCCcCCHHHHH
Confidence 44555555554 59999999999997665432 11112588999974 2 35555442 3344
Q ss_pred HHHHHHHh
Q 009394 295 RAISAAHV 302 (535)
Q Consensus 295 ~ai~~i~~ 302 (535)
++++.+..
T Consensus 85 ~~l~~l~~ 92 (272)
T 2i2c_A 85 KLVKLLAK 92 (272)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 55555543
No 20
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=91.62 E-value=0.063 Score=54.03 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=44.7
Q ss_pred HHHHHHHHHHh---------------CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCch
Q 009394 223 TSKIVDSIQDR---------------GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFD 287 (535)
Q Consensus 223 ~~ki~~~l~~~---------------~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFd 287 (535)
.+++.+.|+++ +.|.+|++|||||+..|..... +. +||+||.. -++||-
T Consensus 42 ~~~l~~~L~~~g~~v~~~~~~~~~~~~~DlvIvlGGDGT~L~aa~~~~-----~~-~PilGIN~----------G~lGFL 105 (278)
T 1z0s_A 42 VKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK-----RC-PPIFGINT----------GRVGLL 105 (278)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHHHTTCS-----SC-CCEEEEEC----------SSSCTT
T ss_pred HHHHHHHHHHCCCEEEEccccccccCCCCEEEEECCCHHHHHHHHHhC-----CC-CcEEEECC----------CCCccc
Confidence 66777777776 4588999999999965543321 33 88999984 288998
Q ss_pred hHH--HHHHHHHHHHHh
Q 009394 288 TAV--EEAQRAISAAHV 302 (535)
Q Consensus 288 TAv--~~~~~ai~~i~~ 302 (535)
|.+ +.+.++++++..
T Consensus 106 t~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 106 THASPENFEVELKKAVE 122 (278)
T ss_dssp CCBBTTBCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHh
Confidence 765 445566666654
No 21
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=84.43 E-value=0.27 Score=48.23 Aligned_cols=53 Identities=25% Similarity=0.336 Sum_probs=34.2
Q ss_pred hCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH--HHHHHHHHHHH
Q 009394 233 RGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV--EEAQRAISAAH 301 (535)
Q Consensus 233 ~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~ 301 (535)
.+.|.++++|||||+..+.... .+ .++++||+ + | |.||-+.+ +.+.++++.+.
T Consensus 40 ~~~D~vv~~GGDGTll~~a~~~-----~~-~~PilGIn-~------G---~~Gfl~~~~~~~~~~al~~i~ 94 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAAKKA-----AD-GTPMVGFK-A------G---RLGFLTSYTLDEIDRFLEDLR 94 (258)
T ss_dssp BCCSEEEEEECHHHHHHHHTTB-----CT-TCEEEEEE-S------S---SCCSSCCBCGGGHHHHHHHHH
T ss_pred CCCCEEEEEeCcHHHHHHHHHh-----CC-CCCEEEEE-C------C---CCCccCcCCHHHHHHHHHHHH
Confidence 3689999999999986654322 13 68899997 3 2 44665544 33445555554
No 22
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=84.35 E-value=20 Score=33.64 Aligned_cols=128 Identities=8% Similarity=0.055 Sum_probs=73.1
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcH
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDT 223 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~ 223 (535)
+..+||++...-.-|-...++.++.+.+.. ++ .++.-+ .+.......
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~ 50 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIER-LG-GTAIAL-------------------------------DAGRNDQTQ 50 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHH-TT-CEEEEE-------------------------------ECTTCHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------cCCCCHHHH
Confidence 446899999877777777788888877754 33 222211 011111224
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHHHhh
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVE 303 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~ 303 (535)
.+.++.+...++|++++.+.+.... ....+.+.+.+ ++||.+ |++.+....++++|-. .....+.+.+...
T Consensus 51 ~~~~~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~V~~D~~-~~g~~~~~~l~~~ 121 (291)
T 3l49_A 51 VSQIQTLIAQKPDAIIEQLGNLDVL--NPWLQKINDAG--IPLFTV----DTATPHAINNTTSNNY-SIGAELALQMVAD 121 (291)
T ss_dssp HHHHHHHHHHCCSEEEEESSCHHHH--HHHHHHHHHTT--CCEEEE----SCCCTTCSEEEEECHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHCC--CcEEEe----cCCCCCcCceEecChH-HHHHHHHHHHHHH
Confidence 5678888899999999998875432 22345555556 456655 3444333345666543 2223333344433
Q ss_pred hhcCcceEEEE
Q 009394 304 AESFENGIGVV 314 (535)
Q Consensus 304 A~S~~~rv~iV 314 (535)
...+ ++|.++
T Consensus 122 ~~g~-~~i~~i 131 (291)
T 3l49_A 122 LGGK-GNVLVF 131 (291)
T ss_dssp HTTC-EEEEEE
T ss_pred cCCC-ceEEEE
Confidence 3454 568777
No 23
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=84.14 E-value=31 Score=33.61 Aligned_cols=169 Identities=12% Similarity=0.084 Sum_probs=85.7
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CCcH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GHDT 223 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~ 223 (535)
..+||++...-.-|-...++.++-..+.. ++ .+++- ..+.. ....
T Consensus 62 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~~ 107 (339)
T 3h5o_A 62 SRTVLVLIPSLANTVFLETLTGIETVLDA-AG-YQMLI--------------------------------GNSHYDAGQE 107 (339)
T ss_dssp -CEEEEEESCSTTCTTHHHHHHHHHHHHH-TT-CEEEE--------------------------------EECTTCHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCChHHH
Confidence 35899999877777788888888877754 33 23321 11111 1223
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHHHhh
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVE 303 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~ 303 (535)
.+.++.|...++|++++.+-+.+-. +.+.+.+.+ +++|.+= +.......++++|-. .....+.+.+..
T Consensus 108 ~~~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~--iPvV~~~----~~~~~~~~~V~~D~~-~~~~~a~~~L~~- 175 (339)
T 3h5o_A 108 LQLLRAYLQHRPDGVLITGLSHAEP----FERILSQHA--LPVVYMM----DLADDGRCCVGFSQE-DAGAAITRHLLS- 175 (339)
T ss_dssp HHHHHHHHTTCCSEEEEECSCCCTT----HHHHHHHTT--CCEEEEE----SCCSSSCCEEECCHH-HHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCCCEEEEeCCCCCHH----HHHHHhcCC--CCEEEEe----ecCCCCCeEEEECHH-HHHHHHHHHHHH-
Confidence 5677888899999999998765542 233444455 4566552 211111126666532 112223333322
Q ss_pred hhcCcceEEEEEecC------CCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhC
Q 009394 304 AESFENGIGVVKLMG------RYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN 364 (535)
Q Consensus 304 A~S~~~rv~iVEvMG------R~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~ 364 (535)
.+| ++|.++--.. |..||........-...+..++.+..++.+ .-.+.+++-++.+
T Consensus 176 -~G~-~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~ 237 (339)
T 3h5o_A 176 -RGK-RRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQ---MGADMLDRALAER 237 (339)
T ss_dssp -TTC-CSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHH---HHHHHHHHHHHHC
T ss_pred -CCC-CeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHH---HHHHHHHHHHcCC
Confidence 244 5688875332 344555433221100123333434455443 3344455555543
No 24
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=83.34 E-value=31 Score=33.55 Aligned_cols=124 Identities=8% Similarity=0.016 Sum_probs=68.8
Q ss_pred CeeEEEEccC--CCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CC
Q 009394 145 DVHACIVTCG--GLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GH 221 (535)
Q Consensus 145 ~~~iaIvtsG--G~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~ 221 (535)
..+||++... -.-|-...++.++.+.+.. ++ .++.-+ .+.. .+
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~ 106 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-RQLLLA--------------------------------DGKHSAE 106 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------ECTTSHH
T ss_pred CCEEEEEecCCcccChhHHHHHHHHHHHHHH-CC-CEEEEE--------------------------------eCCCChH
Confidence 4589999977 5667777888888877754 33 232211 1111 11
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC-cccCchhHHHHHHHHHHHH
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID-KSFGFDTAVEEAQRAISAA 300 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD-~S~GFdTAv~~~~~ai~~i 300 (535)
...+.++.|...++|++++.+.+.+... +.+.+.+.+ ++||. +|.+++..+ .++++|-. .....+.+.+
T Consensus 107 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~~--iPvV~----~~~~~~~~~~~~V~~D~~-~~~~~a~~~L 176 (338)
T 3dbi_A 107 EERQAIQYLLDLRCDAIMIYPRFLSVDE---IDDIIDAHS--QPIMV----LNRRLRKNSSHSVWCDHK-QTSFNAVAEL 176 (338)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSSSCHHH---HHHHHHHCS--SCEEE----ESSCCSSSGGGEECBCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCChHH---HHHHHHcCC--CCEEE----EcCCCCCCCCCEEEEChH-HHHHHHHHHH
Confidence 2345778889999999999987766432 334444445 45664 455444322 34555532 1222233333
Q ss_pred HhhhhcCcceEEEEE
Q 009394 301 HVEAESFENGIGVVK 315 (535)
Q Consensus 301 ~~~A~S~~~rv~iVE 315 (535)
.. .++ ++|.++-
T Consensus 177 ~~--~G~-~~I~~i~ 188 (338)
T 3dbi_A 177 IN--AGH-QEIAFLT 188 (338)
T ss_dssp HH--TTC-CSEEEEC
T ss_pred HH--CCC-CEEEEEe
Confidence 22 244 5677773
No 25
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=80.70 E-value=26 Score=34.25 Aligned_cols=85 Identities=11% Similarity=-0.026 Sum_probs=52.9
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccC-CCCcH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSR-GGHDT 223 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR-~~~d~ 223 (535)
..+||++...-.-|=...++.++-+.+.. ++ .+++-. .+. ..+..
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~~~ 113 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVLED-TE-LQPVVG--------------------------------VTDYLPEKE 113 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHTS-SS-SEEEEE--------------------------------ECTTCHHHH
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHHH-CC-CEEEEE--------------------------------eCCCCHHHH
Confidence 45899999776777778888888777643 22 233211 111 11223
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
.+.++.|...++|++++.+-+.+-. +.+.+.+.++ ++|.+
T Consensus 114 ~~~i~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~i--PvV~i 153 (344)
T 3kjx_A 114 EKVLYEMLSWRPSGVIIAGLEHSEA----ARAMLDAAGI--PVVEI 153 (344)
T ss_dssp HHHHHHHHTTCCSEEEEECSCCCHH----HHHHHHHCSS--CEEEE
T ss_pred HHHHHHHHhCCCCEEEEECCCCCHH----HHHHHHhCCC--CEEEE
Confidence 5677888899999999998776542 3344455564 45554
No 26
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=77.56 E-value=48 Score=31.63 Aligned_cols=172 Identities=13% Similarity=0.101 Sum_probs=91.1
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTS 224 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 224 (535)
+.+|||+...-.-|-...+++++-+.+.. ++ .++.-. .+........
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~~ 48 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAES-LG-AKVFVQ-------------------------------SANGNEETQM 48 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHH-TS-CEEEEE-------------------------------ECTTCHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------CCCCCHHHHH
Confidence 45899999887788889999998887754 33 232211 0111112234
Q ss_pred HHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC--cccCchhHHHHHHHHHHHHHh
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID--KSFGFDTAVEEAQRAISAAHV 302 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD--~S~GFdTAv~~~~~ai~~i~~ 302 (535)
+.++.+...++|++++.+-+.... ..+.+.+.+.+ ++||.+ |++++..+ .++++|-. .....+.+.+..
T Consensus 49 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~~ 119 (313)
T 3m9w_A 49 SQIENMINRGVDVLVIIPYNGQVL--SNVVKEAKQEG--IKVLAY----DRMINDADIDFYISFDNE-KVGELQAKALVD 119 (313)
T ss_dssp HHHHHHHHTTCSEEEEECSSTTSC--HHHHHHHHTTT--CEEEEE----SSCCTTSCCSEEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHCC--CeEEEE----CCcCCCCCceEEEecCHH-HHHHHHHHHHHH
Confidence 678888899999999999876531 12233444445 567754 55554333 46777642 122233333331
Q ss_pred hhhcCcceEEEEEe-cC------CCccHHHHHHhHhcCCccEEecCCC---CCCCCCcchHHHHHHHHHHhC
Q 009394 303 EAESFENGIGVVKL-MG------RYSGFIAMYATIASRDVDCCLIPES---PFYLEGPGGLFEYIEKRLKEN 364 (535)
Q Consensus 303 ~A~S~~~rv~iVEv-MG------R~sG~LAl~aaLAs~~ad~ilIPE~---pf~l~~~~~l~e~I~~rl~~~ 364 (535)
...+ ++|.++-- .+ |..||......... ..++.++++. .++. +.-.+.+++.+++.
T Consensus 120 -~~G~-~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~ 185 (313)
T 3m9w_A 120 -IVPQ-GNYFLMGGSPVDNNAKLFRAGQMKVLKPYVD-SGKIKVVGDQWVDGWLP---ENALKIMENALTAN 185 (313)
T ss_dssp -HCSS-EEEEEEESCTTCHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEECGGGCH---HHHHHHHHHHHHHT
T ss_pred -hCCC-CcEEEEECCCCCccHHHHHHHHHHHHHhhcc-CCCEEEEeeccCCCcCH---HHHHHHHHHHHHhC
Confidence 1344 56777742 22 44566554333211 2344444332 2222 24445556556543
No 27
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=77.00 E-value=18 Score=34.11 Aligned_cols=125 Identities=10% Similarity=0.095 Sum_probs=69.4
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcH
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDT 223 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~ 223 (535)
+..+||++...-.-|-...++.++.+.+.. ++ .++.-+. +.......
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~ 53 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARH-KG-YSVLLAN-------------------------------TAEDIVRE 53 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CTTCHHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHHH
Confidence 345899999877777777888888777754 33 2332110 00111223
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC-cccCchhHHHHHHHHHHHHHh
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID-KSFGFDTAVEEAQRAISAAHV 302 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD-~S~GFdTAv~~~~~ai~~i~~ 302 (535)
.++++.|...++|++++.+.+.... +.+.+.+.+ ++||. +|++++..+ .++++|-. .....+.+.+..
T Consensus 54 ~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~~~--iPvV~----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~~ 122 (291)
T 3egc_A 54 REAVGQFFERRVDGLILAPSEGEHD----YLRTELPKT--FPIVA----VNRELRIPGCGAVLSENV-RGARTAVEYLIA 122 (291)
T ss_dssp HHHHHHHHHTTCSEEEECCCSSCCH----HHHHSSCTT--SCEEE----ESSCCCCTTCEEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEeCCCCChH----HHHHhhccC--CCEEE----EecccCCCCCCEEEECcH-HHHHHHHHHHHH
Confidence 5678889999999999999876332 233333334 56664 455554222 35555532 122233333332
Q ss_pred hhhcCcceEEEEE
Q 009394 303 EAESFENGIGVVK 315 (535)
Q Consensus 303 ~A~S~~~rv~iVE 315 (535)
..+ ++|.++-
T Consensus 123 --~G~-~~i~~i~ 132 (291)
T 3egc_A 123 --RGH-TRIGAIV 132 (291)
T ss_dssp --TTC-CSEEEEC
T ss_pred --cCC-CEEEEEe
Confidence 244 5677764
No 28
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=75.59 E-value=18 Score=34.19 Aligned_cols=185 Identities=10% Similarity=-0.038 Sum_probs=97.5
Q ss_pred CCeeEEEEccCC-CCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CC
Q 009394 144 DDVHACIVTCGG-LCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GH 221 (535)
Q Consensus 144 ~~~~iaIvtsGG-~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~ 221 (535)
+..+||++...- .-|-...++.++-+.+... ++..+.-.. ...... ..
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-~g~~~~~~~-----------------------------~~~~~~~~~ 56 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTY-SDFNISANI-----------------------------THYDPYDYN 56 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHT-GGGCEEEEE-----------------------------EEECSSCHH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHH-HhCCeEEEE-----------------------------EcCCCCCHH
Confidence 456899998876 7888888888888877542 111121110 000010 12
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCC--CcccCchh--HHHHHHHHH
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPII--DKSFGFDT--AVEEAQRAI 297 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gt--D~S~GFdT--Av~~~~~ai 297 (535)
...+.++.|...++|++++.+-+.... ..+.+.+.+.+ ++||. +|++++.. ..++++|- +...+++
T Consensus 57 ~~~~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~----~~~~~~~~~~~~~V~~D~~~~g~~a~~-- 126 (304)
T 3gbv_A 57 SFVATSQAVIEEQPDGVMFAPTVPQYT--KGFTDALNELG--IPYIY----IDSQIKDAPPLAFFGQNSHQSGYFAAR-- 126 (304)
T ss_dssp HHHHHHHHHHTTCCSEEEECCSSGGGT--HHHHHHHHHHT--CCEEE----ESSCCTTSCCSEEEECCHHHHHHHHHH--
T ss_pred HHHHHHHHHHhcCCCEEEECCCChHHH--HHHHHHHHHCC--CeEEE----EeCCCCCCCceEEEecChHHHHHHHHH--
Confidence 234677888899999999998875421 12234444456 45664 44555432 33555553 3333333
Q ss_pred HHHHhhhhcCcceEEEEEe-----------cCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhC--
Q 009394 298 SAAHVEAESFENGIGVVKL-----------MGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN-- 364 (535)
Q Consensus 298 ~~i~~~A~S~~~rv~iVEv-----------MGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~-- 364 (535)
.+...... +++|.++-. .-|..||........- ..+...+.+..++.+ .-.+.+++-++++
T Consensus 127 -~l~~~g~~-~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~ 200 (304)
T 3gbv_A 127 -MLMLLAVN-DREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHP-ACNILELNLHADLNI---EDSRMLDDFFREHPD 200 (304)
T ss_dssp -HHHHHSTT-CSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCT-TSEEEEEEEESSCSS---CHHHHHHHHHHHCTT
T ss_pred -HHHHHhCC-CCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCC-CcEEEEeeecCCCHH---HHHHHHHHHHHhCCC
Confidence 33222211 256887752 2356677665443211 234444444555555 3455566666554
Q ss_pred CcEEEEEecC
Q 009394 365 GHMVIVIAEG 374 (535)
Q Consensus 365 ~~~vIVVaEG 374 (535)
-.+|++.+..
T Consensus 201 ~~ai~~~~d~ 210 (304)
T 3gbv_A 201 VKHGITFNSK 210 (304)
T ss_dssp CCEEEESSSC
T ss_pred eEEEEEcCcc
Confidence 2455554443
No 29
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=73.38 E-value=7.5 Score=39.10 Aligned_cols=52 Identities=25% Similarity=0.326 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc--CCCeeEeeeccccccCcc
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR--GLKVAVAGIPKTIDNDIP 278 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~--g~~i~VvgIPkTIDNDI~ 278 (535)
.++++.+...+.|.++++|||||+..+..- +.++ +.++++..||.==-||+.
T Consensus 72 ~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~---l~~~~~~~~~plgiiP~Gt~N~fa 125 (332)
T 2bon_A 72 ARYVEEARKFGVATVIAGGGDGTINEVSTA---LIQCEGDDIPALGILPLGTANDFA 125 (332)
T ss_dssp HHHHHHHHHHTCSEEEEEESHHHHHHHHHH---HHHCCSSCCCEEEEEECSSSCHHH
T ss_pred HHHHHHHHhcCCCEEEEEccchHHHHHHHH---HhhcccCCCCeEEEecCcCHHHHH
Confidence 344455555689999999999998765432 3322 456788889986667664
No 30
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=72.95 E-value=1.8 Score=45.17 Aligned_cols=125 Identities=22% Similarity=0.205 Sum_probs=67.5
Q ss_pred CCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEcccccc--ccCCCeeeCCHhHHhchhcccCcceeccCC
Q 009394 142 ESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRG--FYARNTIPLTPKIVNGIHKRGGTILGTSRG 219 (535)
Q Consensus 142 ~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~G--L~~~~~~~L~~~~V~~i~~~GGs~LGTsR~ 219 (535)
.....+|+||.== ..|.+-..++.+++.|... +.+||-=..=.+- +.+.. .... +... +-+.+
T Consensus 35 ~~~~k~I~iv~K~-~~~~~~~~~~~l~~~L~~~--~~~V~ve~~~~~~~~~~~~~----~~~~---~~~~----~~~~~- 99 (365)
T 3pfn_A 35 NKSPKSVLVIKKM-RDASLLQPFKELCTHLMEE--NMIVYVEKKVLEDPAIASDE----SFGA---VKKK----FCTFR- 99 (365)
T ss_dssp SSCCCEEEEEECT-TCGGGHHHHHHHHHHHHHT--SCEEEEEHHHHHSHHHHHCS----TTHH---HHHH----CEEEC-
T ss_pred CCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHC--CCEEEEehHHhhhhcccccc----cccc---cccc----ccccc-
Confidence 3445689999842 3577888899999888652 4566531110000 00000 0000 0000 00001
Q ss_pred CCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH--HHHHHHH
Q 009394 220 GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV--EEAQRAI 297 (535)
Q Consensus 220 ~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai 297 (535)
.+.+.+ ...+|.+|++|||||+-.|..+.. +..++|+||=. -++||-|-+ +.+.+++
T Consensus 100 -~~~~~~-----~~~~DlvI~lGGDGT~L~aa~~~~-----~~~~PvlGiN~----------G~LGFLt~~~~~~~~~~l 158 (365)
T 3pfn_A 100 -EDYDDI-----SNQIDFIICLGGDGTLLYASSLFQ-----GSVPPVMAFHL----------GSLGFLTPFSFENFQSQV 158 (365)
T ss_dssp -TTTCCC-----TTTCSEEEEESSTTHHHHHHHHCS-----SSCCCEEEEES----------SSCTTTCCEESTTHHHHH
T ss_pred -cChhhc-----ccCCCEEEEEcChHHHHHHHHHhc-----cCCCCEEEEcC----------CCCccceeecHHHHHHHH
Confidence 011111 147899999999999977665532 45678999842 388997753 3455666
Q ss_pred HHHHh
Q 009394 298 SAAHV 302 (535)
Q Consensus 298 ~~i~~ 302 (535)
+++..
T Consensus 159 ~~vl~ 163 (365)
T 3pfn_A 159 TQVIE 163 (365)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66543
No 31
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=72.17 E-value=3.1 Score=41.94 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCcc
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIP 278 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~ 278 (535)
.++++.+...+.|.++++|||||+..+.. .+.+.+.++++.+||.==-||+.
T Consensus 70 ~~~~~~~~~~~~d~vvv~GGDGTv~~v~~---~l~~~~~~~pl~iIP~GT~N~lA 121 (337)
T 2qv7_A 70 TLEAERAMHENYDVLIAAGGDGTLNEVVN---GIAEKPNRPKLGVIPMGTVNDFG 121 (337)
T ss_dssp HHHHHHHTTTTCSEEEEEECHHHHHHHHH---HHTTCSSCCEEEEEECSSCCHHH
T ss_pred HHHHHHHhhcCCCEEEEEcCchHHHHHHH---HHHhCCCCCcEEEecCCcHhHHH
Confidence 34455555567899999999999876543 33223567899999987778875
No 32
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=72.11 E-value=47 Score=32.61 Aligned_cols=85 Identities=9% Similarity=0.025 Sum_probs=52.5
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CCcH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GHDT 223 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~ 223 (535)
..+||++...-.-|-...++.++-..+.. ++ .+++-. .+.. .+..
T Consensus 70 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~~~ 115 (355)
T 3e3m_A 70 SGFVGLLLPSLNNLHFAQTAQSLTDVLEQ-GG-LQLLLG--------------------------------YTAYSPERE 115 (355)
T ss_dssp -CEEEEEESCSBCHHHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------ECTTCHHHH
T ss_pred CCEEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEEEE--------------------------------eCCCChHHH
Confidence 34899998776667777788888776653 33 233211 1111 1123
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
.+.++.|...++|++++.+.+.+-. ..+.+.+.+ ++||.+
T Consensus 116 ~~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~~--iPvV~i 155 (355)
T 3e3m_A 116 EQLVETMLRRRPEAMVLSYDGHTEQ----TIRLLQRAS--IPIVEI 155 (355)
T ss_dssp HHHHHHHHHTCCSEEEEECSCCCHH----HHHHHHHCC--SCEEEE
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCHH----HHHHHHhCC--CCEEEE
Confidence 4678888899999999998776542 234445556 456655
No 33
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=71.20 E-value=1.2 Score=44.84 Aligned_cols=34 Identities=35% Similarity=0.539 Sum_probs=23.9
Q ss_pred HhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeec
Q 009394 232 DRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIP 270 (535)
Q Consensus 232 ~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 270 (535)
..+.|.++++|||||+..|..... .. .++++||+
T Consensus 73 ~~~~d~vi~~GGDGT~l~a~~~~~---~~--~~pvlgi~ 106 (307)
T 1u0t_A 73 ADGCELVLVLGGDGTFLRAAELAR---NA--SIPVLGVN 106 (307)
T ss_dssp ---CCCEEEEECHHHHHHHHHHHH---HH--TCCEEEEE
T ss_pred ccCCCEEEEEeCCHHHHHHHHHhc---cC--CCCEEEEe
Confidence 356899999999999877665432 22 36789997
No 34
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=67.39 E-value=63 Score=30.18 Aligned_cols=123 Identities=15% Similarity=0.050 Sum_probs=71.4
Q ss_pred CCeeEEEEccC-----CCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccC
Q 009394 144 DDVHACIVTCG-----GLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSR 218 (535)
Q Consensus 144 ~~~~iaIvtsG-----G~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR 218 (535)
+..+||++... -.-|-...+++++.+.+.. ++ .++.-+ .+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~ 52 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHV-EG-YALYMS--------------------------------TGE 52 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHH-TT-CEEEEC--------------------------------CCC
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHH-cC-CEEEEE--------------------------------eCC
Confidence 34589999987 6778888899998887754 33 232210 011
Q ss_pred C-CCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCC--CcccCchh--HHHHH
Q 009394 219 G-GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPII--DKSFGFDT--AVEEA 293 (535)
Q Consensus 219 ~-~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gt--D~S~GFdT--Av~~~ 293 (535)
. .+...++++.+...++|++++++.+.+-. ..+.+.+.+ ++||. +|++.+.. -.++++|- +...+
T Consensus 53 ~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~----~~~~~~~~~~~~~V~~D~~~~g~~a 122 (292)
T 3k4h_A 53 TEEEIFNGVVKMVQGRQIGGIILLYSRENDR----IIQYLHEQN--FPFVL----IGKPYDRKDEITYVDNDNYTAAREV 122 (292)
T ss_dssp SHHHHHHHHHHHHHTTCCCEEEESCCBTTCH----HHHHHHHTT--CCEEE----ESCCSSCTTTSCEEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEeCCCCChH----HHHHHHHCC--CCEEE----ECCCCCCCCCCCEEEECcHHHHHHH
Confidence 1 11235678888999999999998775542 334444556 45664 45555432 23555553 33333
Q ss_pred HHHHHHHHhhhhcCcceEEEEEe
Q 009394 294 QRAISAAHVEAESFENGIGVVKL 316 (535)
Q Consensus 294 ~~ai~~i~~~A~S~~~rv~iVEv 316 (535)
++. +.. .++ ++|.++--
T Consensus 123 ~~~---L~~--~G~-~~i~~i~~ 139 (292)
T 3k4h_A 123 AEY---LIS--LGH-KQIAFIGG 139 (292)
T ss_dssp HHH---HHH--TTC-CCEEEEES
T ss_pred HHH---HHH--CCC-ceEEEEeC
Confidence 332 222 244 56777753
No 35
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=67.30 E-value=23 Score=34.63 Aligned_cols=102 Identities=20% Similarity=0.366 Sum_probs=58.8
Q ss_pred ccccccCCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccC---------------CCeeeCCH
Q 009394 136 REKVYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYA---------------RNTIPLTP 200 (535)
Q Consensus 136 r~~~~~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~---------------~~~~~L~~ 200 (535)
|+.........+-++|.++|+-+- .++. ++... .-++++-.|..=|++ |++-.+++
T Consensus 11 ~~~~~~~~~~~~~~lIv~ng~~~~---~~~~----~~~~~--~~~i~aDgGa~~l~~~~~~~~~~~~Pd~ivGD~DSi~~ 81 (247)
T 3s4y_A 11 RENLYFQGGNLKYCLVILNQPLDN---YFRH----LWNKA--LLRACADGGANRLYDITEGERESFLPEFINGDFDSIRP 81 (247)
T ss_dssp ---------CCCEEEEECSSCCCT---THHH----HHHHC--SCEEEETTHHHHHHHHTTTCGGGCCCSEEEECCSSSCH
T ss_pred cccccccCCCCCEEEEEECCcchH---HHHH----HHhhC--CEEEEEchHHHHHHHhccccccCCCccEEEcCCcCCCH
Confidence 334444444567778888999872 3333 33332 247888888765554 23334555
Q ss_pred hHHhchhcccCcceeccCC-CCcHHHHHHHHHHh------CCcEEEEecCCcc
Q 009394 201 KIVNGIHKRGGTILGTSRG-GHDTSKIVDSIQDR------GINQVYVLGGDGT 246 (535)
Q Consensus 201 ~~V~~i~~~GGs~LGTsR~-~~d~~ki~~~l~~~------~Id~LvvIGGdgS 246 (535)
+..+.+...|-.++-.... .-|++++++.+.++ +.+-++++|+.|.
T Consensus 82 ~~~~~~~~~~~~i~~~peKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GG 134 (247)
T 3s4y_A 82 EVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAG 134 (247)
T ss_dssp HHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSS
T ss_pred HHHHHHHhcCCEEEECCCCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCC
Confidence 5555566565445532211 23688888877664 7899999999997
No 36
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=65.64 E-value=1.6 Score=45.68 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=36.6
Q ss_pred hCCcEEEEecCCcchHHHHHHHHHHHHcCCCe-eEeeeccccccCccCCCcccCchhHHH--HHHHHHHHHHh
Q 009394 233 RGINQVYVLGGDGTQKGASAIFEEIRRRGLKV-AVAGIPKTIDNDIPIIDKSFGFDTAVE--EAQRAISAAHV 302 (535)
Q Consensus 233 ~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i-~VvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~ai~~i~~ 302 (535)
.+.|.+|++|||||+..|..... +..+ +|+||+. -++||-|.++ .+.++++.+..
T Consensus 113 ~~~DlVIvlGGDGTlL~aa~~~~-----~~~vpPiLGIN~----------G~lGFLt~~~~~~~~~al~~il~ 170 (388)
T 3afo_A 113 NRTDLLVTLGGDGTILHGVSMFG-----NTQVPPVLAFAL----------GTLGFLSPFDFKEHKKVFQEVIS 170 (388)
T ss_dssp HHCSEEEEEESHHHHHHHHHTTT-----TSCCCCEEEEEC----------SSCCSSCCEEGGGHHHHHHHHHT
T ss_pred cCCCEEEEEeCcHHHHHHHHHhc-----ccCCCeEEEEEC----------CCcccCCcCChHHHHHHHHHHhc
Confidence 45899999999999977654432 2345 7999962 2678877643 34455555543
No 37
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=65.35 E-value=73 Score=29.70 Aligned_cols=129 Identities=13% Similarity=0.081 Sum_probs=72.8
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHH
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSK 225 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~k 225 (535)
.+||++...-.-|-...+++++-+.+.. ++ .++.-+. +........+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~~~ 62 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSE-QG-YSMLLTS-------------------------------TNNNPDNERR 62 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CTTCHHHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCChHHHHH
Confidence 5899999888888888899998887754 33 2332110 1011122356
Q ss_pred HHHHHHHhCCcEEEEecCCcchH-HHHHHHHHHHHcCCCeeEeeeccccccCccCCC-cccCchhHHHHHHHHHHHHHhh
Q 009394 226 IVDSIQDRGINQVYVLGGDGTQK-GASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID-KSFGFDTAVEEAQRAISAAHVE 303 (535)
Q Consensus 226 i~~~l~~~~Id~LvvIGGdgS~~-~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD-~S~GFdTAv~~~~~ai~~i~~~ 303 (535)
.++.|...++|++++.+.+.+.. ....+.+.+.+.+ ++||.+ |++++..+ .++++|-. +....+.+.+..
T Consensus 63 ~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~V~~d~~-~~~~~a~~~L~~- 134 (298)
T 3tb6_A 63 GLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNG--IPFAMI----NASYAELAAPSFTLDDV-KGGMMAAEHLLS- 134 (298)
T ss_dssp HHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTT--CCEEEE----SSCCTTCSSCEEEECHH-HHHHHHHHHHHH-
T ss_pred HHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcC--CCEEEE----ecCcCCCCCCEEEeCcH-HHHHHHHHHHHH-
Confidence 78888899999999999875421 1122334555556 456643 44443322 35555532 222333333332
Q ss_pred hhcCcceEEEEEec
Q 009394 304 AESFENGIGVVKLM 317 (535)
Q Consensus 304 A~S~~~rv~iVEvM 317 (535)
.++ ++|.++--.
T Consensus 135 -~G~-~~i~~i~~~ 146 (298)
T 3tb6_A 135 -LGH-THMMGIFKA 146 (298)
T ss_dssp -TTC-CSEEEEEES
T ss_pred -CCC-CcEEEEcCC
Confidence 244 567777543
No 38
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=63.53 E-value=4.4 Score=40.30 Aligned_cols=86 Identities=22% Similarity=0.340 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHHH
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAH 301 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~ 301 (535)
+..++++.+.+ +.|.++++|||||+..+. ..+..++.++++..||.==-||+.- ++|...-... +++.+.
T Consensus 52 ~a~~~~~~~~~-~~d~vv~~GGDGTl~~v~---~~l~~~~~~~~l~iiP~Gt~N~~ar---~lg~~~~~~~---a~~~i~ 121 (304)
T 3s40_A 52 DATKYCQEFAS-KVDLIIVFGGDGTVFECT---NGLAPLEIRPTLAIIPGGTCNDFSR---TLGVPQNIAE---AAKLIT 121 (304)
T ss_dssp HHHHHHHHHTT-TCSEEEEEECHHHHHHHH---HHHTTCSSCCEEEEEECSSCCHHHH---HTTCCSSHHH---HHHHHT
T ss_pred hHHHHHHHhhc-CCCEEEEEccchHHHHHH---HHHhhCCCCCcEEEecCCcHHHHHH---HcCCCccHHH---HHHHHH
Confidence 44556655544 889999999999997543 3333323568899999877788752 3443322222 233332
Q ss_pred hhhhcCcceEEEEEecCCC
Q 009394 302 VEAESFENGIGVVKLMGRY 320 (535)
Q Consensus 302 ~~A~S~~~rv~iVEvMGR~ 320 (535)
....+.+=+.++-+|+
T Consensus 122 ---~g~~~~iDlg~v~~~~ 137 (304)
T 3s40_A 122 ---KEHVKPVDVAKANGQH 137 (304)
T ss_dssp ---TCCEEEEEEEEETTEE
T ss_pred ---hCCeEEEEEEEECCEE
Confidence 1233456666665554
No 39
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=62.48 E-value=1.1e+02 Score=29.16 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=61.9
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcH
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDT 223 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~ 223 (535)
++.+|||+...-.-|=...++.++-..+.. ++ .++.-+ .+.......
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~ 48 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQE-AG-YKTDLQ-------------------------------YADDDIPNQ 48 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHH-TT-CEEEEE-------------------------------ECTTCHHHH
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHH-cC-CEEEEe-------------------------------eCCCCHHHH
Confidence 346899999887788888888888877754 33 232211 011111223
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccC---CCcccCch
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPI---IDKSFGFD 287 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~g---tD~S~GFd 287 (535)
.+.++.+...++|++++.+-+.... ....+.+.+.| ++||.+ |++++. .+.++|+|
T Consensus 49 ~~~i~~~~~~~vdgiIi~~~~~~~~--~~~~~~~~~~g--iPvV~~----~~~~~~~~~~~~~V~~D 107 (330)
T 3uug_A 49 LSQIENMVTKGVKVLVIASIDGTTL--SDVLKQAGEQG--IKVIAY----DRLIRNSGDVSYYATFD 107 (330)
T ss_dssp HHHHHHHHHHTCSEEEECCSSGGGG--HHHHHHHHHTT--CEEEEE----SSCCCSCTTCCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEEcCCchhH--HHHHHHHHHCC--CCEEEE----CCCCCCCCceeEEEEeC
Confidence 4677888889999999998775321 12234445555 567754 555443 23466655
No 40
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=62.35 E-value=1.2e+02 Score=29.48 Aligned_cols=93 Identities=8% Similarity=0.067 Sum_probs=53.3
Q ss_pred CeeEEEEccCCCC-CchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcH
Q 009394 145 DVHACIVTCGGLC-PGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDT 223 (535)
Q Consensus 145 ~~~iaIvtsGG~a-pGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~ 223 (535)
..+||++..+-.. |=...++.++.+.+.. ++. ++.-.. +.......
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~-~g~-~~~~~~-------------------------------~~~~~~~~ 49 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARD-LGL-DLRILY-------------------------------AERDPQNT 49 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHH-HTC-EEEEEE-------------------------------CTTCHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHH-cCC-eEEEEE-------------------------------CCCCHHHH
Confidence 4589999987766 7788888888877754 332 332110 00111122
Q ss_pred HHHHHHHHH--hCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccC
Q 009394 224 SKIVDSIQD--RGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPI 279 (535)
Q Consensus 224 ~ki~~~l~~--~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~g 279 (535)
.+.++.+.. .++|++++++ +... ...+.+.+.+.| |+||. +|++++.
T Consensus 50 ~~~i~~~i~~~~~vDgiIi~~-~~~~--~~~~~~~~~~~g--iPvV~----~~~~~~~ 98 (350)
T 3h75_A 50 LQQARELFQGRDKPDYLMLVN-EQYV--APQILRLSQGSG--IKLFI----VNSPLTL 98 (350)
T ss_dssp HHHHHHHHHSSSCCSEEEEEC-CSSH--HHHHHHHHTTSC--CEEEE----EESCCCT
T ss_pred HHHHHHHHhcCCCCCEEEEeC-chhh--HHHHHHHHHhCC--CcEEE----EcCCCCh
Confidence 345566666 6999999997 3322 223344454445 56775 4555544
No 41
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=61.97 E-value=1e+02 Score=29.20 Aligned_cols=86 Identities=10% Similarity=0.074 Sum_probs=50.6
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CCcH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GHDT 223 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~ 223 (535)
+.+||++...-..|-...++.++-+.+.. ++ .++.- ..+.. ....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~l~~--------------------------------~~~~~~~~~~ 47 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEK-RG-ITLKI--------------------------------ADGQQKQENQ 47 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHH-HT-CEEEE--------------------------------EECTTCHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHH-cC-CEEEE--------------------------------eCCCCCHHHH
Confidence 36899999876667677777777776643 33 22211 01111 1123
Q ss_pred HHHHHHHHHhCCcEEEEecCCcch-HHHHHHHHHHHHcCCCeeEeee
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQ-KGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~-~~A~~L~~~~~~~g~~i~VvgI 269 (535)
.+.++.|...++|++++.+.+... .. ..+.+.+.+ ++||.+
T Consensus 48 ~~~i~~l~~~~vdgiIi~~~~~~~~~~---~~~~~~~~~--iPvV~~ 89 (306)
T 2vk2_A 48 IKAVRSFVAQGVDAIFIAPVVATGWEP---VLKEAKDAE--IPVFLL 89 (306)
T ss_dssp HHHHHHHHHHTCSEEEECCSSSSSCHH---HHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhHHH---HHHHHHHCC--CCEEEe
Confidence 456788888999999999876542 21 223444455 556654
No 42
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=59.93 E-value=1.1e+02 Score=28.18 Aligned_cols=166 Identities=11% Similarity=0.136 Sum_probs=86.6
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHH
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSK 225 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~k 225 (535)
.+||++...-.-|-...++.++-+.+.. ++ .++.-+. +....+...+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~~~ 49 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARA-RG-YQLLIAS-------------------------------SDDQPDSERQ 49 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CTTCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHHHHH
Confidence 4799999877777788888888777754 33 2332110 0011122356
Q ss_pred HHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC-cccCchhHHHHHHHHHHHHHhhh
Q 009394 226 IVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID-KSFGFDTAVEEAQRAISAAHVEA 304 (535)
Q Consensus 226 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD-~S~GFdTAv~~~~~ai~~i~~~A 304 (535)
.++.+...++|++++.+.+.... ...+.+.+.+ ++||. +|++++..+ .++++|-. .....+.+.+..
T Consensus 50 ~~~~l~~~~vdgiIi~~~~~~~~---~~~~~~~~~~--iPvV~----~~~~~~~~~~~~V~~d~~-~~~~~a~~~L~~-- 117 (272)
T 3o74_A 50 LQQLFRARRCDALFVASCLPPED---DSYRELQDKG--LPVIA----IDRRLDPAHFCSVISDDR-DASRQLAASLLS-- 117 (272)
T ss_dssp HHHHHHHTTCSEEEECCCCCSSC---CHHHHHHHTT--CCEEE----ESSCCCTTTCEEEEECHH-HHHHHHHHHHHT--
T ss_pred HHHHHHHcCCCEEEEecCccccH---HHHHHHHHcC--CCEEE----EccCCCccccCEEEEchH-HHHHHHHHHHHH--
Confidence 78888899999999998874321 1234444556 45663 455554322 34555432 122233333332
Q ss_pred hcCcceEEEEEecC-------CCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHh
Q 009394 305 ESFENGIGVVKLMG-------RYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE 363 (535)
Q Consensus 305 ~S~~~rv~iVEvMG-------R~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~ 363 (535)
..+ ++|.++--.. |..||. .++...+.+...+....++.+ .-.+.+++-+++
T Consensus 118 ~G~-~~i~~i~~~~~~~~~~~R~~gf~---~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~ 176 (272)
T 3o74_A 118 SAP-RSIALIGARPELSVSQARAGGFD---EALQGYTGEVRRYQGEAFSRE---CGQRLMQQLIDD 176 (272)
T ss_dssp TCC-SEEEEEEECTTSHHHHHHHHHHH---HHTTTCCSEEEEEEESSSSHH---HHHHHHHHHHHH
T ss_pred CCC-cEEEEEecCCCCccHHHHHHHHH---HHHHHcCCChheeecCCCCHH---HHHHHHHHHHhc
Confidence 243 5787775432 223443 334433444444433344433 344555555544
No 43
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=59.59 E-value=46 Score=32.96 Aligned_cols=164 Identities=18% Similarity=0.094 Sum_probs=90.6
Q ss_pred CCeeEEEEc-cCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CC
Q 009394 144 DDVHACIVT-CGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GH 221 (535)
Q Consensus 144 ~~~~iaIvt-sGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~ 221 (535)
+.|||+||| |+.+-|- ...+.++ ..++-+.-=+.|=.-.+-++++++.+-.....++.+.-||.- ..
T Consensus 2 ~~Mki~IvtDSt~dl~~----------e~~~~~~-I~vvPl~v~~~~~~y~D~~di~~~efy~~~~~~~~~p~TSqps~~ 70 (285)
T 3lup_A 2 NAMKLALITDTSAYLPE----------AIENHED-VYVLDIPIIIDGKTYIEGQNLTLDQYYDKLAASKELPKTSQPSLA 70 (285)
T ss_dssp -CCCEEEEEETTBCCCT----------TTTTCTT-EEEECCCEESSSSCCCBTTTBCHHHHHHHHHHCSSCCEECCCCHH
T ss_pred CCCCEEEEEECCCCCCH----------HHHHHCC-eEEEEEEEEECCEEEecCCCCCHHHHHHHHHhCCCCceeCCCCHH
Confidence 457999999 6655551 1112233 234332222222111122578888888877777777677764 35
Q ss_pred cHHHHHHHHHHhCCcEEEEec----CCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHH
Q 009394 222 DTSKIVDSIQDRGINQVYVLG----GDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAI 297 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIG----GdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai 297 (535)
++.++.+.+.+.|-+.+++|. =.||+.+|...+++.. +.+|.|| |.- -.|.|..=.+..+++.+
T Consensus 71 ~~~~~f~~l~~~g~d~ii~i~iSs~LSGTy~sA~~a~~~~~--~~~I~Vi------DS~----~~s~g~g~~v~~A~~l~ 138 (285)
T 3lup_A 71 ELDDLLCQLEKEGYTHVLGLFIAAGISGFWQNIQFLIEEHP--NLTIAFP------DTK----ITSAPQGNLVRNALMCS 138 (285)
T ss_dssp HHHHHHHHHHHTTCCEEEECCSCGGGCTHHHHHTTHHHHCT--TSEEECC------CCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCchhHHHHHHHHHHHhCC--CCCEEEE------cCC----chHHHHHHHHHHHHHHH
Confidence 688888888888999888875 4677777776554321 2233222 111 12555555555555443
Q ss_pred H----------HHHhhhhcCcceEEEEEec------CCCccHHHHHHhHh
Q 009394 298 S----------AAHVEAESFENGIGVVKLM------GRYSGFIAMYATIA 331 (535)
Q Consensus 298 ~----------~i~~~A~S~~~rv~iVEvM------GR~sG~LAl~aaLA 331 (535)
+ .+..-. ...+-+|+|+.. ||=+.--|+.+.|-
T Consensus 139 ~~G~s~eeI~~~l~~~~-~~~~~~f~v~~L~~L~kGGRis~~~a~ig~lL 187 (285)
T 3lup_A 139 REGMDFDVIVNKIQSQI-EKIEGFIVVNDLNHLVKGGRLSNGSAIIGNLL 187 (285)
T ss_dssp TTTCCHHHHHHHHHHHH-TTCEEEEECSCTHHHHHHTCBTTHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHH-hhcEEEEEECChHHHhhCCCccHHHHHHHHhh
Confidence 2 222222 223458888876 66655555555544
No 44
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=58.71 E-value=13 Score=37.86 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCch
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFD 287 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFd 287 (535)
..+++++.+++++.|.+|-|||--.++.|..++- . ++ +++|.||-| ++||-+.|--
T Consensus 74 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~-~--~~--~p~i~IPTT-----a~tgSevt~~ 129 (370)
T 1jq5_A 74 EVERIANIARKAEAAIVIGVGGGKTLDTAKAVAD-E--LD--AYIVIVPTA-----ASTDAPTSAL 129 (370)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHH-H--HT--CEEEEEESS-----CCSSCTTCSE
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHH-h--cC--CCEEEeccc-----cCCCcccCCe
Confidence 4678888999999999999999888888887773 2 34 679999999 6666554433
No 45
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=57.63 E-value=92 Score=29.52 Aligned_cols=123 Identities=11% Similarity=0.086 Sum_probs=68.4
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CCcH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GHDT 223 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~ 223 (535)
..+||++...-.-|-...++.++-+.+.. ++ .+++- ..+.. .+..
T Consensus 15 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~~ 60 (303)
T 3kke_A 15 SGTIGLIVPDVNNAVFADMFSGVQMAASG-HS-TDVLL--------------------------------GQIDAPPRGT 60 (303)
T ss_dssp --CEEEEESCTTSTTHHHHHHHHHHHHHH-TT-CCEEE--------------------------------EECCSTTHHH
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCChHHH
Confidence 35799998877777788888888777753 22 22221 11111 1234
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHHHhh
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVE 303 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~ 303 (535)
.++++.|...++|++++.+.+.+... ..+.+.+ + ++||.+ |++++..-.++++|-. .....+.+.+..
T Consensus 61 ~~~~~~l~~~~vdgiI~~~~~~~~~~---~~~~l~~-~--iPvV~i----~~~~~~~~~~V~~D~~-~~g~~a~~~L~~- 128 (303)
T 3kke_A 61 QQLSRLVSEGRVDGVLLQRREDFDDD---MLAAVLE-G--VPAVTI----NSRVPGRVGSVILDDQ-KGGGIATEHLIT- 128 (303)
T ss_dssp HHHHHHHHSCSSSEEEECCCTTCCHH---HHHHHHT-T--SCEEEE----SCCCTTCCCEEEECHH-HHHHHHHHHHHH-
T ss_pred HHHHHHHHhCCCcEEEEecCCCCcHH---HHHHHhC-C--CCEEEE----CCcCCCCCCEEEECcH-HHHHHHHHHHHH-
Confidence 57788899999999999998776430 2334444 4 567754 4444321234555521 112222333322
Q ss_pred hhcCcceEEEEE
Q 009394 304 AESFENGIGVVK 315 (535)
Q Consensus 304 A~S~~~rv~iVE 315 (535)
.++ ++|.++-
T Consensus 129 -~G~-~~I~~i~ 138 (303)
T 3kke_A 129 -LGH-SRIAFIS 138 (303)
T ss_dssp -TTC-CSEEEEE
T ss_pred -CCC-CeEEEEe
Confidence 354 5677774
No 46
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=54.09 E-value=50 Score=31.30 Aligned_cols=82 Identities=11% Similarity=0.135 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC-cccCchhHHHHHHHHHHHH
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID-KSFGFDTAVEEAQRAISAA 300 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD-~S~GFdTAv~~~~~ai~~i 300 (535)
...++.+.+...++|++++.+.+.+.. ..+.+.+.++ +||. +|++.+... .++++|-. .....+.+.+
T Consensus 53 ~~~~~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~i--PvV~----~~~~~~~~~~~~V~~D~~-~~~~~a~~~L 121 (294)
T 3qk7_A 53 KYQSLIHLVETRRVDALIVAHTQPEDF----RLQYLQKQNF--PFLA----LGRSHLPKPYAWFDFDNH-AGASLAVKRL 121 (294)
T ss_dssp CCHHHHHHHHHTCCSEEEECSCCSSCH----HHHHHHHTTC--CEEE----ESCCCCSSCCEEEEECHH-HHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCCEEEEeCCCCChH----HHHHHHhCCC--CEEE----ECCCCCCCCCCEEEcChH-HHHHHHHHHH
Confidence 345778889999999999999876542 2344445564 4664 344432221 24555532 1222233333
Q ss_pred HhhhhcCcceEEEEEec
Q 009394 301 HVEAESFENGIGVVKLM 317 (535)
Q Consensus 301 ~~~A~S~~~rv~iVEvM 317 (535)
.. .++ ++|.++--.
T Consensus 122 ~~--~G~-~~I~~i~~~ 135 (294)
T 3qk7_A 122 LE--LGH-QRIAFVSTD 135 (294)
T ss_dssp HH--TTC-CCEEEEEES
T ss_pred HH--CCC-ceEEEEeCC
Confidence 22 254 568777543
No 47
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=53.68 E-value=17 Score=37.79 Aligned_cols=47 Identities=13% Similarity=0.214 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccc
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKT 272 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkT 272 (535)
+..+++++.+++.+.|.+|-|||--+++.|..++-. + .+++|.||-|
T Consensus 93 ~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~---~--~~p~i~IPTT 139 (387)
T 3uhj_A 93 SEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAID---T--GARIVIAPTI 139 (387)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH---T--TCEEEECCSS
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHh---c--CCCEEEecCc
Confidence 346788999999999999999998888888877632 2 4789999999
No 48
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=53.65 E-value=39 Score=33.32 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=61.7
Q ss_pred CchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCe-eeCCHhHHhchhcccCcceeccC---CCCcHHHHHHHHHHh
Q 009394 158 PGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNT-IPLTPKIVNGIHKRGGTILGTSR---GGHDTSKIVDSIQDR 233 (535)
Q Consensus 158 pGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~-~~L~~~~V~~i~~~GGs~LGTsR---~~~d~~ki~~~l~~~ 233 (535)
|--+...+.+++.+...++..+|.-+..- ..+ ........+.+...|+.+..... +..++...+..+++.
T Consensus 124 ~~~~~~~~~~~~~l~~~~g~~~iaii~~~------~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~ 197 (392)
T 3lkb_A 124 TSYSEQVVALLEYIAREKKGAKVALVVHP------SPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQA 197 (392)
T ss_dssp CCHHHHHHHHHHHHHHHCTTCEEEEEECS------SHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHhCCCCEEEEEEeC------CchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhc
Confidence 34455666677766554455566555321 111 11111122334556777665433 235778888999999
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeec
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIP 270 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 270 (535)
+.|++|+.+.+. .+..+.+.+++.|+++++++..
T Consensus 198 ~~dav~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~ 231 (392)
T 3lkb_A 198 GVEYVVHQNVAG---PVANILKDAKRLGLKMRHLGAH 231 (392)
T ss_dssp TCCEEEEESCHH---HHHHHHHHHHHTTCCCEEEECG
T ss_pred CCCEEEEecCcc---hHHHHHHHHHHcCCCceEEEec
Confidence 999988876432 3455667778889988887653
No 49
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=53.07 E-value=11 Score=39.09 Aligned_cols=53 Identities=9% Similarity=0.156 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcC----------------CCeeEeeeccccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRG----------------LKVAVAGIPKTID 274 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g----------------~~i~VvgIPkTID 274 (535)
..+++++.+++.++|.+|-|||--.++.|..++-.....+ -.+++|.||-|--
T Consensus 94 ~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTag 162 (408)
T 1oj7_A 94 TLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPA 162 (408)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCS
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCc
Confidence 4678899999999999999999888888887765322111 3478999999954
No 50
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=53.00 E-value=1.7e+02 Score=28.30 Aligned_cols=121 Identities=10% Similarity=0.123 Sum_probs=65.4
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CCcH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GHDT 223 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~ 223 (535)
..+||++...-.-|-...++.++-+.+.. ++ .+++- ..+.. .+..
T Consensus 58 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~~ 103 (340)
T 1qpz_A 58 TKSIGLLATSSEAAYFAEIIEAVEKNCFQ-KG-YTLIL--------------------------------GNAWNNLEKQ 103 (340)
T ss_dssp CSEEEEEESCSCSHHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------EECTTCHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEE--------------------------------EeCCCCHHHH
Confidence 35899998765566667777777776643 22 22211 01111 1123
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHH-cCCCeeEeeeccccccCccCCC--cccCchh--HHHHHHHHHH
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR-RGLKVAVAGIPKTIDNDIPIID--KSFGFDT--AVEEAQRAIS 298 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-~g~~i~VvgIPkTIDNDI~gtD--~S~GFdT--Av~~~~~ai~ 298 (535)
.+.++.|...++|++++.+.+.+-. +.+.+.+ .+ ++||.+ |++.+..+ .++++|- +...+++.
T Consensus 104 ~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~~~~~~a~~~-- 171 (340)
T 1qpz_A 104 RAYLSMMAQKRVDGLLVMCSEYPEP----LLAMLEEYRH--IPMVVM----DWGEAKADFTDAVIDNAFEGGYMAGRY-- 171 (340)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCHH----HHHHHHTTTT--SCEEEE----EESSCCCSSSEEEECCHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCCCEEEEeCCCCChH----HHHHHHhhCC--CCEEEE----ecccCCCCCCCEEEECHHHHHHHHHHH--
Confidence 4567888889999999998775432 1222322 34 556654 44443322 2566653 33333333
Q ss_pred HHHhhhhcCcceEEEEE
Q 009394 299 AAHVEAESFENGIGVVK 315 (535)
Q Consensus 299 ~i~~~A~S~~~rv~iVE 315 (535)
+.. .+| ++|.++-
T Consensus 172 -L~~--~G~-~~I~~i~ 184 (340)
T 1qpz_A 172 -LIE--RGH-REIGVIP 184 (340)
T ss_dssp -HHH--HTC-CCEEEEC
T ss_pred -HHH--CCC-CEEEEEe
Confidence 222 244 5688774
No 51
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=52.99 E-value=25 Score=33.42 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=49.8
Q ss_pred CeEEEEEccccccccC---------CCeeeCCHhHHhchhcccCcceeccCC--CCcHHHHHHHHHHhCCcEEEEecCCc
Q 009394 177 VHKVLGIEGGYRGFYA---------RNTIPLTPKIVNGIHKRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYVLGGDG 245 (535)
Q Consensus 177 ~~~V~Gi~~G~~GL~~---------~~~~~L~~~~V~~i~~~GGs~LGTsR~--~~d~~ki~~~l~~~~Id~LvvIGGdg 245 (535)
..-++|+-.|..=|++ |++=.++++....+...| .++-.... .-|++++++.+.+++.+-++++|+.|
T Consensus 22 ~~~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~-~i~~~p~eKD~TD~e~Al~~a~~~~~~~I~i~Ga~G 100 (212)
T 3l8m_A 22 HEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI-EINPYNSEKDDTDLALGIDQAVKRGYRNIDVYGATG 100 (212)
T ss_dssp TSEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT-BCCCCC---CBCHHHHHHHHHHHTTCCEEEEESCSS
T ss_pred CCEEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC-cEEEECCcCCCCHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 3578899988887654 344456666666666666 55544332 24789999999999999999999999
Q ss_pred c
Q 009394 246 T 246 (535)
Q Consensus 246 S 246 (535)
.
T Consensus 101 g 101 (212)
T 3l8m_A 101 G 101 (212)
T ss_dssp S
T ss_pred C
Confidence 7
No 52
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=52.44 E-value=1.5e+02 Score=27.52 Aligned_cols=125 Identities=7% Similarity=-0.002 Sum_probs=64.8
Q ss_pred CCeeEEEEccC--CCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-C
Q 009394 144 DDVHACIVTCG--GLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-G 220 (535)
Q Consensus 144 ~~~~iaIvtsG--G~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~ 220 (535)
+..+||++... -..|-...++.++-..+.. .+ .++.-+ .+.. .
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~--------------------------------~~~~~~ 63 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-RQLLLA--------------------------------DGKHSA 63 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------CCTTSH
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHH-CC-CEEEEE--------------------------------eCCCCH
Confidence 34589999865 5667777788888776653 22 222110 0011 1
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHH-cCCCeeEeeeccccccCccCC-CcccCchhHHHHHHHHHH
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR-RGLKVAVAGIPKTIDNDIPII-DKSFGFDTAVEEAQRAIS 298 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-~g~~i~VvgIPkTIDNDI~gt-D~S~GFdTAv~~~~~ai~ 298 (535)
....+.++.|...++|++++.+.+.+-. ..+.+.+ .+ ++||.+- .+.+.. -.++++|-.- ....+.+
T Consensus 64 ~~~~~~~~~l~~~~vdgii~~~~~~~~~----~~~~l~~~~~--iPvV~~~----~~~~~~~~~~V~~d~~~-~~~~a~~ 132 (296)
T 3brq_A 64 EEERQAIQYLLDLRCDAIMIYPRFLSVD----EIDDIIDAHS--QPIMVLN----RRLRKNSSHSVWCDHKQ-TSFNAVA 132 (296)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSSSCHH----HHHHHHHTCS--SCEEEES----CCCSSSGGGEECCCHHH-HHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCCChH----HHHHHHhcCC--CCEEEEc----cccCCCCCCEEEEchHH-HHHHHHH
Confidence 1234567788889999999998865422 2234445 45 4566553 333221 1356655321 1222333
Q ss_pred HHHhhhhcCcceEEEEEe
Q 009394 299 AAHVEAESFENGIGVVKL 316 (535)
Q Consensus 299 ~i~~~A~S~~~rv~iVEv 316 (535)
.+.. .++ ++|.++--
T Consensus 133 ~l~~--~G~-~~I~~i~~ 147 (296)
T 3brq_A 133 ELIN--AGH-QEIAFLTG 147 (296)
T ss_dssp HHHH--TTC-CSEEEECC
T ss_pred HHHH--CCC-ceEEEEcC
Confidence 3332 244 56877743
No 53
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=51.90 E-value=1.5e+02 Score=27.47 Aligned_cols=122 Identities=9% Similarity=0.086 Sum_probs=65.8
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTS 224 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 224 (535)
..+||++...-..|-...++.++-..+.. ++ .++.-. -+....+...
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~ 53 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQ-KG-YTLILG-------------------------------NAWNNLEKQR 53 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHH-HT-CEEEEE-------------------------------ECTTCHHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CeEEEE-------------------------------cCCCChHHHH
Confidence 35899998766667777788887776643 22 222110 0000011234
Q ss_pred HHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHH-cCCCeeEeeeccccccCccCCC--cccCchh--HHHHHHHHHHH
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR-RGLKVAVAGIPKTIDNDIPIID--KSFGFDT--AVEEAQRAISA 299 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-~g~~i~VvgIPkTIDNDI~gtD--~S~GFdT--Av~~~~~ai~~ 299 (535)
+.++.|...++|++++.+.+.+-. +.+.+.+ .+ ++||.+ |++.+..+ .++++|- +...+++ .
T Consensus 54 ~~~~~l~~~~vdgii~~~~~~~~~----~~~~l~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~~~~~~~~~~---~ 120 (289)
T 1dbq_A 54 AYLSMMAQKRVDGLLVMCSEYPEP----LLAMLEEYRH--IPMVVM----DWGEAKADFTDAVIDNAFEGGYMAGR---Y 120 (289)
T ss_dssp HHHHHHHHTTCSEEEEECSCCCHH----HHHHHHHTTT--SCEEEE----ECSSCCSSSCEEEEECHHHHHHHHHH---H
T ss_pred HHHHHHHhCCCCEEEEEeccCCHH----HHHHHHhccC--CCEEEE----ccCCCccCcCCEEEeCcHHHHHHHHH---H
Confidence 567888889999999998876422 2233333 34 556654 44443322 3566653 3333333 3
Q ss_pred HHhhhhcCcceEEEEE
Q 009394 300 AHVEAESFENGIGVVK 315 (535)
Q Consensus 300 i~~~A~S~~~rv~iVE 315 (535)
+.. .++ ++|.++-
T Consensus 121 L~~--~G~-~~i~~i~ 133 (289)
T 1dbq_A 121 LIE--RGH-REIGVIP 133 (289)
T ss_dssp HHH--TTC-CSEEEEC
T ss_pred HHH--CCC-CeEEEEe
Confidence 332 244 5677763
No 54
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=49.94 E-value=1.7e+02 Score=27.46 Aligned_cols=122 Identities=10% Similarity=0.004 Sum_probs=66.8
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTS 224 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 224 (535)
..+||++. .-.-|-...++.++-+.+.. ++ .++.-+ .+....+..
T Consensus 12 ~~~Igvi~-~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~~~ 56 (289)
T 3k9c_A 12 SRLLGVVF-ELQQPFHGDLVEQIYAAATR-RG-YDVMLS--------------------------------AVAPSRAEK 56 (289)
T ss_dssp -CEEEEEE-ETTCHHHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------EEBTTBCHH
T ss_pred CCEEEEEE-ecCCchHHHHHHHHHHHHHH-CC-CEEEEE--------------------------------eCCCCHHHH
Confidence 45899998 66667777788888777653 33 232211 111111245
Q ss_pred HHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC-cccCchhHHHHHHHHHHHHHhh
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID-KSFGFDTAVEEAQRAISAAHVE 303 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD-~S~GFdTAv~~~~~ai~~i~~~ 303 (535)
+.++.|...++|++++.+.+.+.. ..+.+.+ + ++||. +|++++... .++++|-. .....+.+.+..
T Consensus 57 ~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~-~--iPvV~----i~~~~~~~~~~~V~~D~~-~~~~~a~~~L~~- 123 (289)
T 3k9c_A 57 VAVQALMRERCEAAILLGTRFDTD----ELGALAD-R--VPALV----VARASGLPGVGAVRGDDV-AGITLAVDHLTE- 123 (289)
T ss_dssp HHHHHHTTTTEEEEEEETCCCCHH----HHHHHHT-T--SCEEE----ESSCCSSTTSEEEEECHH-HHHHHHHHHHHH-
T ss_pred HHHHHHHhCCCCEEEEECCCCCHH----HHHHHHc-C--CCEEE----EcCCCCCCCCCEEEeChH-HHHHHHHHHHHH-
Confidence 677888889999999999877542 2233433 4 56664 444443222 35555531 122223333322
Q ss_pred hhcCcceEEEEEe
Q 009394 304 AESFENGIGVVKL 316 (535)
Q Consensus 304 A~S~~~rv~iVEv 316 (535)
.++ ++|.++--
T Consensus 124 -~G~-~~I~~i~~ 134 (289)
T 3k9c_A 124 -LGH-RNIAHIDG 134 (289)
T ss_dssp -TTC-CSEEEECC
T ss_pred -CCC-CcEEEEeC
Confidence 344 56887754
No 55
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=49.78 E-value=19 Score=37.10 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=43.8
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc-------------CCCeeEeeeccccccCcc
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR-------------GLKVAVAGIPKTIDNDIP 278 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-------------g~~i~VvgIPkTIDNDI~ 278 (535)
+..+++++.+++.+.|.+|-|||--+++.|..++-..... .-.+++|.||-|--.|-.
T Consensus 75 ~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgSe 145 (383)
T 3ox4_A 75 TAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTASE 145 (383)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCCTT
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCchhh
Confidence 3468899999999999999999988888888776544211 114779999999755433
No 56
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=49.04 E-value=1.6e+02 Score=27.01 Aligned_cols=123 Identities=14% Similarity=0.170 Sum_probs=66.4
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCC-CcHH
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGG-HDTS 224 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~d~~ 224 (535)
.+||++...-.-|-...++.++-+.+.. ++ .++. +..+... ....
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~~ 49 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNK-AG-YQLL--------------------------------LGYSDYSIEQEE 49 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHH-TS-CEEC--------------------------------CEECTTCHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEcCCCCHHHHH
Confidence 4789998766666677777777776643 22 1211 1011111 1234
Q ss_pred HHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCC-CcccCchhHHHHHHHHHHHHHhh
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPII-DKSFGFDTAVEEAQRAISAAHVE 303 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gt-D~S~GFdTAv~~~~~ai~~i~~~ 303 (535)
+.++.|...++|++++.+.+.+-. +.+.+.+.+ ++||.+ |.+.+.. -.++++|-. .....+.+.+..
T Consensus 50 ~~~~~l~~~~vdgii~~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~d~~-~~~~~a~~~L~~- 117 (275)
T 3d8u_A 50 KLLSTFLESRPAGVVLFGSEHSQR----THQLLEASN--TPVLEI----AELSSKASYLNIGVDHF-EVGKACTRHLIE- 117 (275)
T ss_dssp HHHHHHHTSCCCCEEEESSCCCHH----HHHHHHHHT--CCEEEE----SSSCSSSSSEEECBCHH-HHHHHHHHHHHT-
T ss_pred HHHHHHHhcCCCEEEEeCCCCCHH----HHHHHHhCC--CCEEEE----eeccCCCCCCEEEEChH-HHHHHHHHHHHH-
Confidence 667888889999999998775532 233444445 456654 3333221 235666632 122233333332
Q ss_pred hhcCcceEEEEEe
Q 009394 304 AESFENGIGVVKL 316 (535)
Q Consensus 304 A~S~~~rv~iVEv 316 (535)
.++ ++|.++--
T Consensus 118 -~G~-~~i~~i~~ 128 (275)
T 3d8u_A 118 -QGF-KNVGFIGA 128 (275)
T ss_dssp -TTC-CCEEEEEC
T ss_pred -CCC-CeEEEEcC
Confidence 244 56877753
No 57
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=48.77 E-value=19 Score=36.92 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHc---------------CCCeeEeeecccccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR---------------GLKVAVAGIPKTIDN 275 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~---------------g~~i~VvgIPkTIDN 275 (535)
..+++++.+++.++|.+|-|||--.++.|..++-..... .-.+++|.||-|--.
T Consensus 76 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gt 144 (386)
T 1rrm_A 76 VVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGT 144 (386)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSC
T ss_pred HHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCCc
Confidence 467899999999999999999988888888776544211 114689999999743
No 58
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=47.86 E-value=1.2e+02 Score=28.57 Aligned_cols=88 Identities=8% Similarity=0.008 Sum_probs=54.4
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceecc--CCCCc
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTS--RGGHD 222 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTs--R~~~d 222 (535)
+.+||++...-.-|-...+++++.+.+.. ++ .++.-. .+. .....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~~ 49 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEE-LK-VDLQIL-------------------------------APPGANDVPK 49 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHH-HT-CEEEEE-------------------------------CCSSSCCHHH
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHH-hC-cEEEEE-------------------------------CCCCcCCHHH
Confidence 56999999887788888888888887754 33 222210 000 01122
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
..+.++.+...++|++++.+-+.... ....+.+.+.| |+||.+
T Consensus 50 ~~~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~g--iPvV~~ 92 (297)
T 3rot_A 50 QVQFIESALATYPSGIATTIPSDTAF--SKSLQRANKLN--IPVIAV 92 (297)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCSSTT--HHHHHHHHHHT--CCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHHHH--HHHHHHHHHCC--CCEEEE
Confidence 34678888889999999988776521 12234444456 456654
No 59
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=46.45 E-value=2.1e+02 Score=27.69 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=18.6
Q ss_pred cHHHHHHHHHHhCCcEEEEecCC
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGD 244 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGd 244 (535)
+.++.++.|.+.++|++|++|..
T Consensus 50 ~~~~~l~~l~~~~~dgIi~~~~~ 72 (318)
T 2fqx_A 50 EYVPSLSAFADENMGLVVACGSF 72 (318)
T ss_dssp GHHHHHHHHHHTTCSEEEEESTT
T ss_pred HHHHHHHHHHHcCCCEEEECChh
Confidence 45677888999999999998744
No 60
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=45.84 E-value=22 Score=36.58 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccC
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDND 276 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND 276 (535)
..+++++.+++.+.|.++-|||--+++.|..++-. ++ +++|.||-|- .+
T Consensus 76 ~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~~--~P~i~IPTTa-tg 124 (364)
T 3iv7_A 76 VAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT---TA--LPIVAIPTTY-AG 124 (364)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH---HC--CCEEEEECSS-SC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEcCCc-cc
Confidence 46888999999999999999998889888877652 34 6799999997 43
No 61
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=44.95 E-value=2e+02 Score=26.91 Aligned_cols=123 Identities=13% Similarity=0.116 Sum_probs=66.3
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CCcH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GHDT 223 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~ 223 (535)
..+|||+...-.-|-...++.++-+.+.. ++ .++.-+ .+.. ....
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~~~ 61 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATM-YK-YNIILS--------------------------------NSDQNMEKE 61 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------ECTTCHHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEEEEE--------------------------------eCCCCHHHH
Confidence 45899998765666677778887776643 22 222110 1111 1123
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchh--HHHHHHHHHHHHH
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDT--AVEEAQRAISAAH 301 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdT--Av~~~~~ai~~i~ 301 (535)
.+.++.|...++|++++.+.+.+-. ..+.+.+.+ ++||.+-..+++ +. -.++++|- +...+++. +.
T Consensus 62 ~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~~~~~~~--~~-~~~V~~D~~~~g~~a~~~---L~ 129 (289)
T 2fep_A 62 LHLLNTMLGKQVDGIVFMGGNITDE----HVAEFKRSP--VPIVLAASVEEQ--EE-TPSVAIDYEQAIYDAVKL---LV 129 (289)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCHH----HHHHHHHSS--SCEEEESCCCTT--CC-SCEEECCHHHHHHHHHHH---HH
T ss_pred HHHHHHHHhCCCCEEEEecCCCCHH----HHHHHHhcC--CCEEEEccccCC--CC-CCEEEECcHHHHHHHHHH---HH
Confidence 4677888889999999998765422 223444455 556655333222 11 13555553 33333333 32
Q ss_pred hhhhcCcceEEEEEe
Q 009394 302 VEAESFENGIGVVKL 316 (535)
Q Consensus 302 ~~A~S~~~rv~iVEv 316 (535)
. .++ ++|.++--
T Consensus 130 ~--~G~-~~I~~i~~ 141 (289)
T 2fep_A 130 D--KGH-TDIAFVSG 141 (289)
T ss_dssp H--TTC-SSEEEEES
T ss_pred H--CCC-CeEEEEeC
Confidence 2 244 56877753
No 62
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=44.15 E-value=54 Score=30.26 Aligned_cols=86 Identities=21% Similarity=0.285 Sum_probs=56.4
Q ss_pred CCcHHHHHHHHHHh-C----CcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCC--CcccCchh-HHH
Q 009394 220 GHDTSKIVDSIQDR-G----INQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPII--DKSFGFDT-AVE 291 (535)
Q Consensus 220 ~~d~~ki~~~l~~~-~----Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gt--D~S~GFdT-Av~ 291 (535)
+.|+..+.+.|.++ . =|-++|=||-|=+..|....++ .|+.++|+|+-|- ...+... ...+--++ ++.
T Consensus 60 ~DDya~M~Evl~RR~~r~~~PDLilIDGGkgQl~aA~~vl~e---lg~~i~v~glAK~-~e~l~~~~~~i~L~~~s~~l~ 135 (159)
T 2nrr_A 60 PDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALKE---IGKDCPVVGLAKK-EETVVFENREIHLPHDHPVLR 135 (159)
T ss_dssp -CHHHHHHHHHHHHHTTSCCCSEEEESSCHHHHHHHHHHHHH---TTCCCCEEEEC-----CEEETTEEECCCTTCHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHHHHH---cCCCccEEEEEcC-CcEEEeCCCeeecCCCCHHHH
Confidence 36788888887776 2 4777777999999888877664 4888999999993 1223211 12333333 678
Q ss_pred HHHHHHHHHHhhhhcCcc
Q 009394 292 EAQRAISAAHVEAESFEN 309 (535)
Q Consensus 292 ~~~~ai~~i~~~A~S~~~ 309 (535)
.+++.=|.+|.-|.+.++
T Consensus 136 llqriRDEaHRFAIt~HR 153 (159)
T 2nrr_A 136 LLVQIRDETHRFAVSYHR 153 (159)
T ss_dssp HHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888887654
No 63
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=43.96 E-value=1.5e+02 Score=27.67 Aligned_cols=125 Identities=12% Similarity=0.063 Sum_probs=62.3
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTS 224 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 224 (535)
..+||++...-..|-...++.++-+.+.. ++ .++.-.. + +........
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~--------------~----------------~~~~~~~~~ 55 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHK-NG-YNLIIVY--------------S----------------GSADPEEQK 55 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHT-TT-CEEEEEC----------------------------------------
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CeEEEEe--------------C----------------CCCCHHHHH
Confidence 45899999877777788888888777643 22 2222110 0 000011123
Q ss_pred HHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHHHhhh
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEA 304 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~A 304 (535)
+.++.+...++|++++.+.+.+- ...+.+.+.+ ++||.+-..++++ -.++++|-. .....+.+.+..
T Consensus 56 ~~~~~l~~~~vdgiI~~~~~~~~----~~~~~l~~~~--iPvV~~~~~~~~~----~~~V~~D~~-~~g~~a~~~L~~-- 122 (290)
T 3clk_A 56 HALLTAIERPVMGILLLSIALTD----DNLQLLQSSD--VPYCFLSMGFDDD----RPFISSDDE-DIGYQATNLLIN-- 122 (290)
T ss_dssp CHHHHHHSSCCSEEEEESCC--------CHHHHHCC----CEEEESCC--CC----SCEEECCHH-HHHHHHHHHHHT--
T ss_pred HHHHHHHhcCCCEEEEecccCCH----HHHHHHHhCC--CCEEEEcCCCCCC----CCEEEeChH-HHHHHHHHHHHH--
Confidence 45677788899999999876542 1223444444 5677654433332 235555532 112233333332
Q ss_pred hcCcceEEEEE
Q 009394 305 ESFENGIGVVK 315 (535)
Q Consensus 305 ~S~~~rv~iVE 315 (535)
.++ ++|.++-
T Consensus 123 ~G~-~~i~~i~ 132 (290)
T 3clk_A 123 EGH-RQIGIAG 132 (290)
T ss_dssp TTC-CSEEEES
T ss_pred cCC-CEEEEEe
Confidence 244 5677764
No 64
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=43.52 E-value=28 Score=35.50 Aligned_cols=47 Identities=30% Similarity=0.287 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeecccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTI 273 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 273 (535)
..+++++.+++.+.|.+|-|||--+++.|..++-. ++ +++|.||-|-
T Consensus 75 ~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~~--~p~i~IPTTa 121 (353)
T 3hl0_A 75 VTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR---TD--AAQIVIPTTY 121 (353)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---HC--CEEEEEECSS
T ss_pred HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEeCCc
Confidence 46788999999999999999998888888877642 34 6799999996
No 65
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=43.36 E-value=27 Score=35.81 Aligned_cols=53 Identities=8% Similarity=0.090 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHH------c-------CCCeeEeeeccccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR------R-------GLKVAVAGIPKTID 274 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~------~-------g~~i~VvgIPkTID 274 (535)
..+++++.+++.++|.+|-|||--.++.|..++-.... + .-.+++|.||-|--
T Consensus 80 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~g 145 (387)
T 3bfj_A 80 NVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTAG 145 (387)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTT
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 46789999999999999999998889888877653211 0 02478999999963
No 66
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=43.28 E-value=23 Score=36.27 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeecccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTI 273 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 273 (535)
..+++++.+++.+.|.+|-|||--+++.|..++-. ++ +++|.||-|-
T Consensus 77 ~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~---~~--~p~i~IPTT~ 123 (358)
T 3jzd_A 77 SARDATARAREAGADCAVAVGGGSTTGLGKAIALE---TG--MPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH---HC--CCEEEEECSS
T ss_pred HHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEeCCc
Confidence 46788899999999999999998888888877642 34 6799999994
No 67
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=42.75 E-value=2.3e+02 Score=27.09 Aligned_cols=122 Identities=10% Similarity=0.076 Sum_probs=64.3
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CCcH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GHDT 223 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~ 223 (535)
..+||++...-.-|-...++.++-..+.. ++ .++.- ..+.. ....
T Consensus 63 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~--------------------------------~~~~~~~~~~ 108 (332)
T 2o20_A 63 TTTVGVILPTITSTYFAAITRGVDDIASM-YK-YNMIL--------------------------------ANSDNDVEKE 108 (332)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------EECTTCHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CEEEE--------------------------------EECCCChHHH
Confidence 45899998765566666777777766643 22 22211 01111 1123
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchh--HHHHHHHHHHHHH
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDT--AVEEAQRAISAAH 301 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdT--Av~~~~~ai~~i~ 301 (535)
...++.|...++|++++.+.+.+-. ..+.+.+.+ +|+|.+-..+++ +. -.++++|- +...+++ .+.
T Consensus 109 ~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~~~--iPvV~~~~~~~~--~~-~~~V~~D~~~~~~~a~~---~L~ 176 (332)
T 2o20_A 109 EKVLETFLSKQVDGIVYMGSSLDEK----IRTSLKNSR--TPVVLVGTIDGD--KE-IPSVNIDYHLAAYQSTK---KLI 176 (332)
T ss_dssp HHHHHHHHHTTCSEEEECSSCCCHH----HHHHHHHHC--CCEEEESCCCTT--SC-SCEEECCHHHHHHHHHH---HHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCHH----HHHHHHhCC--CCEEEEccccCC--CC-CCEEEeChHHHHHHHHH---HHH
Confidence 4567888889999999998755432 223344445 456655332222 11 12455552 2333333 332
Q ss_pred hhhhcCcceEEEEE
Q 009394 302 VEAESFENGIGVVK 315 (535)
Q Consensus 302 ~~A~S~~~rv~iVE 315 (535)
. .+| ++|.++-
T Consensus 177 ~--~G~-~~I~~i~ 187 (332)
T 2o20_A 177 D--SGN-KKIAYIM 187 (332)
T ss_dssp H--TTC-SSEEEEC
T ss_pred H--CCC-CeEEEEe
Confidence 2 254 5687774
No 68
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=42.54 E-value=16 Score=37.43 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHH-------------cCCCeeEeeeccccccCcc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR-------------RGLKVAVAGIPKTIDNDIP 278 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-------------~g~~i~VvgIPkTIDNDI~ 278 (535)
..+++++.+++.+.|.++-|||--.++.|..++-.... ....+++|.||-|-..+-.
T Consensus 86 ~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgse 155 (371)
T 1o2d_A 86 NVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTGSE 155 (371)
T ss_dssp HHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCCGG
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCchhhh
Confidence 46788888999999999999998889888877654321 0024679999999665433
No 69
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=42.41 E-value=7.9 Score=40.49 Aligned_cols=62 Identities=24% Similarity=0.285 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHhCC---cEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhH
Q 009394 222 DTSKIVDSIQDRGI---NQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTA 289 (535)
Q Consensus 222 d~~ki~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTA 289 (535)
..+++++.+.+.++ |.++-+||--.++.|..++-. -.+| +++|.||-|. +..+|-+.|--|+
T Consensus 108 ~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~-~~rg--ip~I~IPTTl---la~vDssvggkt~ 172 (390)
T 3okf_A 108 TFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAAC-YQRG--VDFIQIPTTL---LSQVDSSVGGKTA 172 (390)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHH-BTTC--CEEEEEECSH---HHHHHTSSSCEEE
T ss_pred HHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHH-hcCC--CCEEEeCCCC---ccccccCcCCeEE
Confidence 46789999999999 699999998888777665432 1234 7799999997 2444555555444
No 70
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=41.16 E-value=2.3e+02 Score=26.45 Aligned_cols=125 Identities=10% Similarity=-0.032 Sum_probs=66.0
Q ss_pred CCeeEEEEccCCCC--CchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCC
Q 009394 144 DDVHACIVTCGGLC--PGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGH 221 (535)
Q Consensus 144 ~~~~iaIvtsGG~a--pGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~ 221 (535)
+..+|||+...-.- |=...++.++-+.+.+ ++ .++.-+ . +.....
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~---------------~----------------~~~~~~ 53 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLST-TQ-YHLVVT---------------P----------------HIHAKD 53 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT-SS-CEEEEC---------------C----------------BSSGGG
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHH-cC-CEEEEe---------------c----------------CCcchh
Confidence 34589999875443 7777788887776642 22 222210 0 000112
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC-cccCchhHHHHHHHHHHHH
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID-KSFGFDTAVEEAQRAISAA 300 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD-~S~GFdTAv~~~~~ai~~i 300 (535)
...++.+.+...++|++++.+.+..-. ..+.+.+.+ ++||. +|++.+..+ .++++|-. .....+.+.+
T Consensus 54 ~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~----i~~~~~~~~~~~V~~D~~-~~g~~a~~~L 122 (288)
T 3gv0_A 54 SMVPIRYILETGSADGVIISKIEPNDP----RVRFMTERN--MPFVT----HGRSDMGIEHAFHDFDNE-AYAYEAVERL 122 (288)
T ss_dssp TTHHHHHHHHHTCCSEEEEESCCTTCH----HHHHHHHTT--CCEEE----ESCCCSSCCCEEEEECHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccEEEEecCCCCcH----HHHHHhhCC--CCEEE----ECCcCCCCCCcEEEeCcH-HHHHHHHHHH
Confidence 235667778889999999998665432 234444556 45663 455544322 35665531 1222233333
Q ss_pred HhhhhcCcceEEEEE
Q 009394 301 HVEAESFENGIGVVK 315 (535)
Q Consensus 301 ~~~A~S~~~rv~iVE 315 (535)
.. ..+ ++|.++-
T Consensus 123 ~~--~G~-~~I~~i~ 134 (288)
T 3gv0_A 123 AQ--CGR-KRIAVIV 134 (288)
T ss_dssp HH--TTC-CEEEEEC
T ss_pred HH--CCC-CeEEEEc
Confidence 22 243 5677764
No 71
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=41.03 E-value=2.3e+02 Score=26.44 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=54.3
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTS 224 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 224 (535)
+++||++...-.-|=...+++++-+.+.. ++ .+++- +.+ .......
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~-~~~~~~~ 47 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKD-LG-FEVIK-------------------------------IAV-PDGEKTL 47 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHH-HT-EEEEE-------------------------------EEC-CSHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHH-cC-CEEEE-------------------------------eCC-CCHHHHH
Confidence 56899999877777777888888777654 22 22221 111 1112235
Q ss_pred HHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
+.++.+...++|++++.+-+.... ..+.+.+.+.+ ++||.+
T Consensus 48 ~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~~ 88 (306)
T 8abp_A 48 NAIDSLAASGAKGFVICTPDPKLG--SAIVAKARGYD--MKVIAV 88 (306)
T ss_dssp HHHHHHHHTTCCEEEEECSCGGGH--HHHHHHHHHTT--CEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCchhh--HHHHHHHHHCC--CcEEEe
Confidence 677888889999999999876532 22334455555 556644
No 72
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=40.59 E-value=26 Score=36.24 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHhC---CcEEEEecCCcchHHHHHHHHHHHHc-------------CCCeeEeeeccccccC
Q 009394 222 DTSKIVDSIQDRG---INQVYVLGGDGTQKGASAIFEEIRRR-------------GLKVAVAGIPKTIDND 276 (535)
Q Consensus 222 d~~ki~~~l~~~~---Id~LvvIGGdgS~~~A~~L~~~~~~~-------------g~~i~VvgIPkTIDND 276 (535)
..+++++.+++.+ .|.+|-|||--+++.|..++-.+... +-.+++|.||-|--.|
T Consensus 94 ~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagtg 164 (375)
T 3rf7_A 94 QVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSGTG 164 (375)
T ss_dssp HHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCSSC
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCccc
Confidence 4678899999998 99999999988898888776543110 1147899999885433
No 73
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=40.01 E-value=1.5e+02 Score=29.12 Aligned_cols=138 Identities=20% Similarity=0.302 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhCCcEE--EEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC---------cccCchhHHH
Q 009394 223 TSKIVDSIQDRGINQV--YVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID---------KSFGFDTAVE 291 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~L--vvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD---------~S~GFdTAv~ 291 (535)
+++..+.+++.+=.+| |+.-||-++.....+.+.+.+.|.++-=+|+|-+ | |.-| ..+-..+-+.
T Consensus 5 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfS---D-P~aDGp~Iq~a~~~AL~~G~~~~ 80 (267)
T 3vnd_A 5 YQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFS---D-PLADGPVIQGANLRSLAAGTTSS 80 (267)
T ss_dssp HHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCS---C-CTTCCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC---C-CCCCCHHHHHHHHHHHHcCCCHH
Confidence 3455666666665555 7889999999999999999999999888898852 2 2222 1222223333
Q ss_pred HHHHHHHHHHhhhhcCcceEEEEEecCCCc-----cHHHHHH-hHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhCC
Q 009394 292 EAQRAISAAHVEAESFENGIGVVKLMGRYS-----GFIAMYA-TIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENG 365 (535)
Q Consensus 292 ~~~~ai~~i~~~A~S~~~rv~iVEvMGR~s-----G~LAl~a-aLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~~ 365 (535)
.+-+.+..++......+ +. +||=+- |.-.... +..+ |+|.++||-.|+.- .+.+.+.+++.|
T Consensus 81 ~~~~~v~~ir~~~~~~P--iv---lm~Y~npv~~~g~e~f~~~~~~a-Gvdgvii~Dlp~ee------~~~~~~~~~~~g 148 (267)
T 3vnd_A 81 DCFDIITKVRAQHPDMP--IG---LLLYANLVFANGIDEFYTKAQAA-GVDSVLIADVPVEE------SAPFSKAAKAHG 148 (267)
T ss_dssp HHHHHHHHHHHHCTTCC--EE---EEECHHHHHHHCHHHHHHHHHHH-TCCEEEETTSCGGG------CHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCC--EE---EEecCcHHHHhhHHHHHHHHHHc-CCCEEEeCCCCHhh------HHHHHHHHHHcC
Confidence 44566666665422333 22 465311 3232222 2334 79999999888742 244555666666
Q ss_pred c-EEEEEecCCC
Q 009394 366 H-MVIVIAEGAG 376 (535)
Q Consensus 366 ~-~vIVVaEGa~ 376 (535)
- .+.+++=...
T Consensus 149 l~~i~liaP~t~ 160 (267)
T 3vnd_A 149 IAPIFIAPPNAD 160 (267)
T ss_dssp CEEECEECTTCC
T ss_pred CeEEEEECCCCC
Confidence 4 4446665544
No 74
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=39.80 E-value=1.8e+02 Score=28.67 Aligned_cols=137 Identities=18% Similarity=0.234 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhCCcEE--EEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC---------cccCchhHHH
Q 009394 223 TSKIVDSIQDRGINQV--YVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID---------KSFGFDTAVE 291 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~L--vvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD---------~S~GFdTAv~ 291 (535)
+++..+.+++.+=.+| |+.-||-++.....+.+.+.+.|.++-=+|+|=+ |- .-| ..+-..+-+.
T Consensus 7 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfS---DP-~aDGpvIq~a~~rAL~~G~~~~ 82 (271)
T 3nav_A 7 YQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFS---DP-LADGPTIQGANLRALAAKTTPD 82 (271)
T ss_dssp HHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCC---CG-GGCCSHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC---CC-CCCCHHHHHHHHHHHHcCCCHH
Confidence 4566677777665555 7889999999999999999999999888999962 21 111 1111112222
Q ss_pred HHHHHHHHHHhhhhcCcceEEEEEecCCC-----ccHHHHHH-hHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhCC
Q 009394 292 EAQRAISAAHVEAESFENGIGVVKLMGRY-----SGFIAMYA-TIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENG 365 (535)
Q Consensus 292 ~~~~ai~~i~~~A~S~~~rv~iVEvMGR~-----sG~LAl~a-aLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~~ 365 (535)
.+-+.+..++..-...+ +. +||=+ -|.-.... +..+ |+|.++||..|+.. .+.+.+..++.|
T Consensus 83 ~~~~~v~~~r~~~~~~P--iv---lm~Y~n~v~~~g~~~f~~~~~~a-GvdGvIipDlp~ee------~~~~~~~~~~~g 150 (271)
T 3nav_A 83 ICFELIAQIRARNPETP--IG---LLMYANLVYARGIDDFYQRCQKA-GVDSVLIADVPTNE------SQPFVAAAEKFG 150 (271)
T ss_dssp HHHHHHHHHHHHCTTSC--EE---EEECHHHHHHTCHHHHHHHHHHH-TCCEEEETTSCGGG------CHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCC--EE---EEecCcHHHHHhHHHHHHHHHHC-CCCEEEECCCCHHH------HHHHHHHHHHcC
Confidence 34455666654422222 32 45421 13322222 2334 79999999888742 244555566666
Q ss_pred cE-EEEEecCC
Q 009394 366 HM-VIVIAEGA 375 (535)
Q Consensus 366 ~~-vIVVaEGa 375 (535)
-. +.+++=-.
T Consensus 151 l~~I~lvap~t 161 (271)
T 3nav_A 151 IQPIFIAPPTA 161 (271)
T ss_dssp CEEEEEECTTC
T ss_pred CeEEEEECCCC
Confidence 44 44665444
No 75
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=38.93 E-value=2.4e+02 Score=26.22 Aligned_cols=124 Identities=15% Similarity=0.096 Sum_probs=66.5
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CCcH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GHDT 223 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~ 223 (535)
..+||++...-.-|=...++.++-+.+.. ++ .++.- ..+.. ....
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~~ 53 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRA-VH-RHVVV--------------------------------ATGCGESTPR 53 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------ECCCSSSCHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCchhhh
Confidence 45899998765566667777777776643 22 22221 01111 1223
Q ss_pred HH---HHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCC-CcccCchhHHHHHHHHHHH
Q 009394 224 SK---IVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPII-DKSFGFDTAVEEAQRAISA 299 (535)
Q Consensus 224 ~k---i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gt-D~S~GFdTAv~~~~~ai~~ 299 (535)
.+ .++.+...++|++++.+.+.+-. ..+.+.+.+ ++||.+ |.+.+.. -.++++|-. +.+..+.+.
T Consensus 54 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~D~~-~~g~~a~~~ 122 (290)
T 2rgy_A 54 EQALEAVRFLIGRDCDGVVVISHDLHDE----DLDELHRMH--PKMVFL----NRAFDALPDASFCPDHR-RGGELAAAT 122 (290)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSSCHH----HHHHHHHHC--SSEEEE----SSCCTTSGGGEECCCHH-HHHHHHHHH
T ss_pred hhHHHHHHHHHhcCccEEEEecCCCCHH----HHHHHhhcC--CCEEEE----ccccCCCCCCEEEeCcH-HHHHHHHHH
Confidence 45 78888899999999998876522 223444456 456655 3333221 135665532 112223333
Q ss_pred HHhhhhcCcceEEEEEe
Q 009394 300 AHVEAESFENGIGVVKL 316 (535)
Q Consensus 300 i~~~A~S~~~rv~iVEv 316 (535)
+.. .++ ++|.+|--
T Consensus 123 L~~--~G~-~~I~~i~~ 136 (290)
T 2rgy_A 123 LIE--HGH-RKLAVISG 136 (290)
T ss_dssp HHH--TTC-CSEEEEES
T ss_pred HHH--CCC-ceEEEEeC
Confidence 332 244 56887753
No 76
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=38.90 E-value=65 Score=31.08 Aligned_cols=104 Identities=17% Similarity=0.099 Sum_probs=59.1
Q ss_pred CchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCe-eeCCHhHHhchhcccCcceeccC---CCCcHHHHHHHHHHh
Q 009394 158 PGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNT-IPLTPKIVNGIHKRGGTILGTSR---GGHDTSKIVDSIQDR 233 (535)
Q Consensus 158 pGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~-~~L~~~~V~~i~~~GGs~LGTsR---~~~d~~ki~~~l~~~ 233 (535)
|.-+...+.+++.+...++..+|.-+... ..+ ..+.....+.+...|+++..... +..++...++.+++.
T Consensus 119 ~~~~~~~~~~~~~l~~~~g~~~iaii~~~------~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~ 192 (356)
T 3ipc_A 119 GRDDQQGGIAGKYLADHFKDAKVAIIHDK------TPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEA 192 (356)
T ss_dssp CCHHHHHHHHHHHHHHHCTTCCEEEEECS------SHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHhcCCCEEEEEeCC------ChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc
Confidence 44445556666666544455555544321 111 01111122334456776654433 235778889999999
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeec
Q 009394 234 GINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIP 270 (535)
Q Consensus 234 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 270 (535)
+.+++|+.+.+.. +..+.+.+++.|+++++++..
T Consensus 193 ~~d~v~~~~~~~~---a~~~~~~~~~~g~~~~~~~~~ 226 (356)
T 3ipc_A 193 GVSIIYWGGLHTE---AGLIIRQAADQGLKAKLVSGD 226 (356)
T ss_dssp TCCEEEEESCHHH---HHHHHHHHHHHTCCCEEEECG
T ss_pred CCCEEEEccCchH---HHHHHHHHHHCCCCCcEEEec
Confidence 9999887665433 334556777789988776543
No 77
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=38.64 E-value=59 Score=31.88 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=28.3
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
+.+.++++.|++.|.+++++-.-.-+. ....| ++ .+++||+||
T Consensus 86 ~~l~~~~~~L~~~Gad~IVIaCNTah~-~l~~l----r~-~~~iPvigi 128 (268)
T 3s81_A 86 RYLERYLHMLEDAGAECIVIPCNTAHY-WFDDL----QN-VAKARMISI 128 (268)
T ss_dssp HHHHHHHHHHHHTTCSEEECSCSGGGG-GHHHH----HH-HCSSEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCHHH-HHHHH----HH-HCCCCEEcc
Confidence 346778899999999977666544333 33333 32 357889985
No 78
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=38.61 E-value=25 Score=36.39 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHH---------H----cCCCeeEeeeccccc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIR---------R----RGLKVAVAGIPKTID 274 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~---------~----~g~~i~VvgIPkTID 274 (535)
..+++++.+++.++|.+|-|||--.++.|..++-... . ..-.+++|.||-|--
T Consensus 89 ~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTag 154 (407)
T 1vlj_A 89 KVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISA 154 (407)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCS
T ss_pred HHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 4678899999999999999999888988887765321 0 012478999999854
No 79
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=38.49 E-value=1.4e+02 Score=27.58 Aligned_cols=121 Identities=9% Similarity=-0.014 Sum_probs=61.0
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTS 224 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 224 (535)
..+||++...-.-|-...++.++...+.. ++. ++.-+ .+........
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~~-------------------------------~~~~~~~~~~ 54 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALA-HGY-QVLIG-------------------------------NSDNDIKKAQ 54 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHH-TTC-CEEEE-------------------------------ECTTCHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHH-CCC-EEEEE-------------------------------eCCCCHHHHH
Confidence 45899998776667777788887776653 322 22210 0111112245
Q ss_pred HHHHHHHHhCCcEEEEecCCcchHHHHHHHH-HHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHHHhh
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFE-EIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVE 303 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~-~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~ 303 (535)
++++.+...++|++++.+.+ - ...+ .+.+.+ ++||. +|++.+..+ ++++|-.- ....+.+.+..
T Consensus 55 ~~~~~l~~~~~dgiIi~~~~--~----~~~~~~l~~~~--iPvV~----~~~~~~~~~-~V~~D~~~-~g~~a~~~L~~- 119 (277)
T 3e61_A 55 GYLATFVSHNCTGMISTAFN--E----NIIENTLTDHH--IPFVF----IDRINNEHN-GISTNHFK-GGQLQAEVVRK- 119 (277)
T ss_dssp HHHHHHHHTTCSEEEECGGG--H----HHHHHHHHHC---CCEEE----GGGCC----------HHH-HHHHHHHHHHH-
T ss_pred HHHHHHHhCCCCEEEEecCC--h----HHHHHHHHcCC--CCEEE----EeccCCCCC-eEEechHH-HHHHHHHHHHH-
Confidence 67888899999999998832 1 1234 455555 45664 455555544 77776421 22233333332
Q ss_pred hhcCcceEEEEE
Q 009394 304 AESFENGIGVVK 315 (535)
Q Consensus 304 A~S~~~rv~iVE 315 (535)
.++ ++|.++-
T Consensus 120 -~G~-~~i~~i~ 129 (277)
T 3e61_A 120 -GKG-KNVLIVH 129 (277)
T ss_dssp -TTC-CSEEEEE
T ss_pred -CCC-CeEEEEe
Confidence 244 5677775
No 80
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=38.41 E-value=1.9e+02 Score=28.11 Aligned_cols=123 Identities=11% Similarity=0.155 Sum_probs=62.8
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CCcH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GHDT 223 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~ 223 (535)
..+||++...-.-|-...++.++-+.+.. ++ .+++ +..+.. ....
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 111 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTASK-AG-LATI--------------------------------ITNSNEDATTM 111 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHHH-TT-CCEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHH
Confidence 34799998665556666677777666643 22 1111 001111 1123
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchh--HHHHHHHHHHHHH
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDT--AVEEAQRAISAAH 301 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdT--Av~~~~~ai~~i~ 301 (535)
...++.|...++|++++.+.+.+- ...+.+.+.+ ++||.+=..++++. .-.++++|- +...+++. +.
T Consensus 112 ~~~~~~l~~~~vdgiI~~~~~~~~----~~~~~l~~~~--iPvV~i~~~~~~~~--~~~~V~~D~~~~~~~a~~~---L~ 180 (348)
T 3bil_A 112 SGSLEFLTSHGVDGIICVPNEECA----NQLEDLQKQG--MPVVLVDRELPGDS--TIPTATSNPQPGIAAAVEL---LA 180 (348)
T ss_dssp HHHHHHHHHTTCSCEEECCCGGGH----HHHHHHHHC---CCEEEESSCCSCC---CCCEEEEECHHHHHHHHHH---HH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCh----HHHHHHHhCC--CCEEEEcccCCCCC--CCCEEEeChHHHHHHHHHH---HH
Confidence 457788888999999999876552 2234444455 45665533332200 112455553 33333333 32
Q ss_pred hhhhcCcceEEEEE
Q 009394 302 VEAESFENGIGVVK 315 (535)
Q Consensus 302 ~~A~S~~~rv~iVE 315 (535)
. .++ ++|.++-
T Consensus 181 ~--~G~-~~I~~i~ 191 (348)
T 3bil_A 181 H--NNA-LPIGYLS 191 (348)
T ss_dssp H--TTC-CSEEEEC
T ss_pred H--CCC-CeEEEEe
Confidence 2 254 5687774
No 81
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=38.30 E-value=50 Score=29.62 Aligned_cols=50 Identities=30% Similarity=0.545 Sum_probs=35.8
Q ss_pred CcHHHHHHHHH-HhCCcEEEEecCCcchHHHHHHHHHHHHc-CCCeeEeeecccc
Q 009394 221 HDTSKIVDSIQ-DRGINQVYVLGGDGTQKGASAIFEEIRRR-GLKVAVAGIPKTI 273 (535)
Q Consensus 221 ~d~~ki~~~l~-~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-g~~i~VvgIPkTI 273 (535)
-|..-+++.++ ...+|.++++-||+-+.- +.+.++++ |.++-++|.|+..
T Consensus 94 ~Dv~laiD~~~~a~~~d~~vLvSgD~DF~p---lv~~lr~~~G~~V~v~g~~~~~ 145 (165)
T 2qip_A 94 WDVGITLDAIEIAPDVDRVILVSGDGDFSL---LVERIQQRYNKKVTVYGVPRLT 145 (165)
T ss_dssp CHHHHHHHHHHHGGGCSEEEEECCCGGGHH---HHHHHHHHHCCEEEEEECGGGS
T ss_pred ccHHHHHHHHHhhccCCEEEEEECChhHHH---HHHHHHHHcCcEEEEEeCCCcC
Confidence 35555555442 257999999999999965 44566675 9888888887643
No 82
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=37.54 E-value=12 Score=38.46 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHhCC---cEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHH
Q 009394 222 DTSKIVDSIQDRGI---NQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAV 290 (535)
Q Consensus 222 d~~ki~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv 290 (535)
..+++++.+.++++ |.++-+||--.++.|..++-. -.+| +++|.||-|. ++++|-+.|--|++
T Consensus 79 ~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~-~~rg--ip~i~IPTTl---la~tdS~v~~kt~I 144 (368)
T 2gru_A 79 TVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGM-MFRG--IALIHVPTTF---LAASDSVLSIKQAV 144 (368)
T ss_dssp HHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHH-BTTC--CEEEEEECSH---HHHHTTTSSCEEEE
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHH-hcCC--CCEEEECCch---HhhcCCCcCCeEEE
Confidence 35788889999985 899999998777776665532 1234 7899999996 45666555555444
No 83
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=36.94 E-value=83 Score=29.36 Aligned_cols=125 Identities=5% Similarity=-0.042 Sum_probs=64.4
Q ss_pred CCeeEEEEcc-CCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCc
Q 009394 144 DDVHACIVTC-GGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHD 222 (535)
Q Consensus 144 ~~~~iaIvts-GG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d 222 (535)
+..+|||+.. .-.-|-...++.++-+.+.+ ++. ++.-+. +......
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~~-------------------------------~~~~~~~ 56 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLAK-QNY-NYNVVI-------------------------------CPYKTDC 56 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHHH-TTT-CSEEEE-------------------------------EEECTTC
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHHH-cCC-eEEEEe-------------------------------cCCCchh
Confidence 3458999986 45667778888888777753 222 211100 0001112
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHHHh
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHV 302 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~ 302 (535)
..++++.+...++|++++.+-+... ..+.+ .....++||.+ |++.+.. .++++|-. .....+++.+..
T Consensus 57 ~~~~~~~l~~~~vdgiIi~~~~~~~---~~~~~---~~~~~iPvV~~----~~~~~~~-~~V~~D~~-~~~~~a~~~L~~ 124 (289)
T 3g85_A 57 LHLEKGISKENSFDAAIIANISNYD---LEYLN---KASLTLPIILF----NRLSNKY-SSVNVDNY-KMGEKASLLFAK 124 (289)
T ss_dssp GGGCGGGSTTTCCSEEEESSCCHHH---HHHHH---HCCCSSCEEEE----SCCCSSS-EEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEEecCCccc---HHHHH---hccCCCCEEEE----CCCCCCC-CEEEeCHH-HHHHHHHHHHHH
Confidence 2344555677899999999876543 22222 12334667754 4444432 35565532 122233333332
Q ss_pred hhhcCcceEEEEEe
Q 009394 303 EAESFENGIGVVKL 316 (535)
Q Consensus 303 ~A~S~~~rv~iVEv 316 (535)
.++ ++|.++--
T Consensus 125 --~G~-~~i~~i~~ 135 (289)
T 3g85_A 125 --KRY-KSAAAILT 135 (289)
T ss_dssp --TTC-CBCEEEEC
T ss_pred --cCC-CEEEEEeC
Confidence 244 56777753
No 84
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=36.19 E-value=2.6e+02 Score=25.70 Aligned_cols=130 Identities=12% Similarity=0.029 Sum_probs=69.3
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTS 224 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 224 (535)
..+||++...-.-|=...++.++.+.+.. ++ .++.-+ .+. ..+...
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~-~~~~~~ 50 (280)
T 3gyb_A 5 TQLIAVLIDDYSNPWFIDLIQSLSDVLTP-KG-YRLSVI-------------------------------DSL-TSQAGT 50 (280)
T ss_dssp CCEEEEEESCTTSGGGHHHHHHHHHHHGG-GT-CEEEEE-------------------------------CSS-SSCSSS
T ss_pred cCEEEEEeCCCCChHHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCC-CchHHH
Confidence 45899999877778888888888887753 33 233211 111 122234
Q ss_pred HHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCc-cCC-CcccCchhHHHHHHHHHHHHHh
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDI-PII-DKSFGFDTAVEEAQRAISAAHV 302 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI-~gt-D~S~GFdTAv~~~~~ai~~i~~ 302 (535)
+.++.|...++|+++ ++.+.... .+.+ .+ ++||.+ |++. ... -.++++|-. +....+.+.+..
T Consensus 51 ~~~~~l~~~~vdgiI-~~~~~~~~---~~~~----~~--iPvV~~----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~~ 115 (280)
T 3gyb_A 51 DPITSALSMRPDGII-IAQDIPDF---TVPD----SL--PPFVIA----GTRITQASTHDSVANDDF-RGAEIATKHLID 115 (280)
T ss_dssp CHHHHHHTTCCSEEE-EESCC---------------C--CCEEEE----SCCCSSSCSTTEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEE-ecCCCChh---hHhh----cC--CCEEEE----CCCCCCCCCCCEEEechH-HHHHHHHHHHHH
Confidence 667778889999999 88776532 2211 34 556644 4444 211 235555532 222233333332
Q ss_pred hhhcCcceEEEEEecC-----CCccHHHH
Q 009394 303 EAESFENGIGVVKLMG-----RYSGFIAM 326 (535)
Q Consensus 303 ~A~S~~~rv~iVEvMG-----R~sG~LAl 326 (535)
.++ ++|.++--.. |..||...
T Consensus 116 --~G~-~~i~~i~~~~~~~~~R~~gf~~~ 141 (280)
T 3gyb_A 116 --LGH-THIAHLRVGSGAGLRRFESFEAT 141 (280)
T ss_dssp --TTC-CSEEEECCSSHHHHHHHHHHHHH
T ss_pred --CCC-CeEEEEeCCCchHHHHHHHHHHH
Confidence 244 5677775433 45566543
No 85
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=35.51 E-value=51 Score=25.67 Aligned_cols=51 Identities=10% Similarity=0.292 Sum_probs=39.3
Q ss_pred eeccCCCCcHHHHHHHHHHhCCc---------EEEEecCCcchHHHHHHHHHHHHcCCCe
Q 009394 214 LGTSRGGHDTSKIVDSIQDRGIN---------QVYVLGGDGTQKGASAIFEEIRRRGLKV 264 (535)
Q Consensus 214 LGTsR~~~d~~ki~~~l~~~~Id---------~LvvIGGdgS~~~A~~L~~~~~~~g~~i 264 (535)
+|+-+...+.++..+.|++.+++ +-|.+|.+.+...|..+.+.+++.|++.
T Consensus 14 vGaf~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~~ 73 (79)
T 1x60_A 14 IGAFKVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFDA 73 (79)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSCC
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCce
Confidence 45555556678888889888887 4567888888888999988888888753
No 86
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=35.41 E-value=1.5e+02 Score=28.47 Aligned_cols=124 Identities=13% Similarity=0.069 Sum_probs=65.0
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CCcH
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GHDT 223 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~ 223 (535)
..+||++...-.-|-...++.++-+.+.. ++ .++.-. .+.. ....
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~~~ 105 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATM-YK-YNIILS--------------------------------NSDQNQDKE 105 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHH-HT-CEEEEE--------------------------------ECCSHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CEEEEE--------------------------------eCCCChHHH
Confidence 45899998766667778888888777653 22 222110 0111 0112
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCC-CcccCchhHHHHHHHHHHHHHh
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPII-DKSFGFDTAVEEAQRAISAAHV 302 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gt-D~S~GFdTAv~~~~~ai~~i~~ 302 (535)
.+.++.|...++|++++.+.+.+-. ..+.+.+.+ +|+|.+ |.+.+.. -.++++|-.- .+..+.+.+..
T Consensus 106 ~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~D~~~-~~~~a~~~L~~ 174 (332)
T 2hsg_A 106 LHLLNNMLGKQVDGIIFMSGNVTEE----HVEELKKSP--VPVVLA----ASIESTNQIPSVTIDYEQ-AAFDAVQSLID 174 (332)
T ss_dssp HHHHHHTSCCSSCCEEECCSSCCHH----HHHHHTTSS--SCEEEE----SCCCSCTTSCEEEECHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcEEEEecCCCCHH----HHHHHHhCC--CCEEEE----ccccCCCCCCEEEEChHH-HHHHHHHHHHH
Confidence 3566777778999999998765431 223343344 556655 3333221 2356655321 12223333332
Q ss_pred hhhcCcceEEEEEe
Q 009394 303 EAESFENGIGVVKL 316 (535)
Q Consensus 303 ~A~S~~~rv~iVEv 316 (535)
.+| ++|.++--
T Consensus 175 --~G~-~~I~~i~~ 185 (332)
T 2hsg_A 175 --SGH-KNIAFVSG 185 (332)
T ss_dssp --TTC-SCEEEEES
T ss_pred --CCC-CEEEEEeC
Confidence 244 56887753
No 87
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=35.37 E-value=2.6e+02 Score=25.45 Aligned_cols=103 Identities=12% Similarity=0.022 Sum_probs=59.1
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcHHH
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSK 225 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~k 225 (535)
+|||++...-.-|-...+++++-+.+.. ++ .++.-+. .+ +........+
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------~~----------------~~~~~~~~~~ 49 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADE-AG-VTLLHRS-------------TK----------------DDGDIAGQIQ 49 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHH-HT-CEEEECC-------------CS----------------STTCHHHHHH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEEEC-------------CC----------------CCCCHHHHHH
Confidence 4899999888888888899998887754 32 2222100 00 0001112345
Q ss_pred HHHHHHHhC-CcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC--cccCch
Q 009394 226 IVDSIQDRG-INQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID--KSFGFD 287 (535)
Q Consensus 226 i~~~l~~~~-Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD--~S~GFd 287 (535)
.++.|.+.+ +|++++.+-+.... ....+.+.+.+ ++||.+ |++.+..+ .++++|
T Consensus 50 ~i~~l~~~~~vdgii~~~~~~~~~--~~~~~~~~~~~--ipvV~~----~~~~~~~~~~~~V~~d 106 (276)
T 3ksm_A 50 ILSYHLSQAPPDALILAPNSAEDL--TPSVAQYRARN--IPVLVV----DSDLAGDAHQGLVATD 106 (276)
T ss_dssp HHHHHHHHSCCSEEEECCSSTTTT--HHHHHHHHHTT--CCEEEE----SSCCSSSCSSEEEECC
T ss_pred HHHHHHHhCCCCEEEEeCCCHHHH--HHHHHHHHHCC--CcEEEE----ecCCCCCCcceEEccC
Confidence 778888888 99999998653321 12234445556 556655 44444332 345555
No 88
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=35.23 E-value=14 Score=37.57 Aligned_cols=50 Identities=22% Similarity=0.366 Sum_probs=38.4
Q ss_pred CcHHHHHHHHHHhCC---cEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeecccc
Q 009394 221 HDTSKIVDSIQDRGI---NQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTI 273 (535)
Q Consensus 221 ~d~~ki~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 273 (535)
+..+++++.++++++ |.++-|||--.++.|..++-.. .+| +++|.||-|.
T Consensus 68 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~~-~rg--ip~i~IPTTl 120 (348)
T 1ujn_A 68 EVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATY-LRG--VAYLAFPTTT 120 (348)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECSH
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHh-ccC--CCEEEecCcH
Confidence 346788999999998 8999999988888777665321 234 7899999884
No 89
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=35.06 E-value=1e+02 Score=29.39 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=48.0
Q ss_pred eEEEEEccccccccC---------CCeeeCCHhHHhchhcccCcceeccCC--CCcHHHHHHHHHHhCCcEEEEecCCcc
Q 009394 178 HKVLGIEGGYRGFYA---------RNTIPLTPKIVNGIHKRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYVLGGDGT 246 (535)
Q Consensus 178 ~~V~Gi~~G~~GL~~---------~~~~~L~~~~V~~i~~~GGs~LGTsR~--~~d~~ki~~~l~~~~Id~LvvIGGdgS 246 (535)
.-++|+-.|..=|++ |++=.++++....+...|-.++-.... .-|++++++.+.+++.+-++++|+.|.
T Consensus 26 ~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~p~eKD~TD~e~Al~~a~~~g~~~I~i~Ga~Gg 105 (222)
T 3lm8_A 26 TLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQPDIIQIFGITGG 105 (222)
T ss_dssp EEEEEETHHHHHHHHHTCCCSEEESCSTTSCHHHHHHHHHHCTTCEEECCCSSSCHHHHHHHHHHHHCCSEEEEESCCCS
T ss_pred CEEEEECHHHHHHHHcCCCCcEEEeCcccCCHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 467888888776653 333355555555565554445544332 247899999999999999999999997
No 90
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=34.89 E-value=90 Score=29.45 Aligned_cols=124 Identities=15% Similarity=0.033 Sum_probs=67.9
Q ss_pred CeeEEEEccCCCCCchh-HHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcH
Q 009394 145 DVHACIVTCGGLCPGLN-TVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDT 223 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmN-avIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~ 223 (535)
..+||++...-.-|-.. .++.++.+.+.. ++ .+++-+. +....+..
T Consensus 13 s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~ 59 (301)
T 3miz_A 13 SNTFGIITDYVSTTPYSVDIVRGIQDWANA-NG-KTILIAN-------------------------------TGGSSERE 59 (301)
T ss_dssp CCEEEEEESSTTTCCSCHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CTTCHHHH
T ss_pred CCEEEEEeCCCcCcccHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCChHHH
Confidence 45899998776667777 888888877754 33 2332110 00011223
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCC--CcccCchhHHHHHHHHHHHHH
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPII--DKSFGFDTAVEEAQRAISAAH 301 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gt--D~S~GFdTAv~~~~~ai~~i~ 301 (535)
.+.++.|...++|++++.+.+..- ..+.+.+.+ ++||.+ |++.+.. -.++++|-. .....+.+.+.
T Consensus 60 ~~~~~~l~~~~vdGiIi~~~~~~~-----~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~ 127 (301)
T 3miz_A 60 VEIWKMFQSHRIDGVLYVTMYRRI-----VDPESGDVS--IPTVMI----NCRPQTRELLPSIEPDDY-QGARDLTRYLL 127 (301)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEEEE-----CCCCCTTCC--CCEEEE----EEECSSTTSSCEEEECHH-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEecCCccH-----HHHHHHhCC--CCEEEE----CCCCCCCCCCCEEeeChH-HHHHHHHHHHH
Confidence 567888999999999999876543 122233334 556654 4444332 235555532 12223333333
Q ss_pred hhhhcCcceEEEEEe
Q 009394 302 VEAESFENGIGVVKL 316 (535)
Q Consensus 302 ~~A~S~~~rv~iVEv 316 (535)
. .++ ++|.++--
T Consensus 128 ~--~G~-~~I~~i~~ 139 (301)
T 3miz_A 128 E--RGH-RRIGYIRL 139 (301)
T ss_dssp T--TTC-CSEEEEEC
T ss_pred H--cCC-CeEEEEec
Confidence 2 354 56877753
No 91
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=34.55 E-value=3.9e+02 Score=27.27 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=73.3
Q ss_pred ccCcceeccCCCCcHHHHHHHHHHhCCcEEEEecCCcc---hHHHHHHHHHHHHcCCCeeEeeeccccc---cCccCCCc
Q 009394 209 RGGTILGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGT---QKGASAIFEEIRRRGLKVAVAGIPKTID---NDIPIIDK 282 (535)
Q Consensus 209 ~GGs~LGTsR~~~d~~ki~~~l~~~~Id~LvvIGGdgS---~~~A~~L~~~~~~~g~~i~VvgIPkTID---NDI~gtD~ 282 (535)
.|-+++++..-+.++.-.....++.....+++.|=|-+ +..+..|.+.++++|++...++-.-|.. .|....--
T Consensus 143 ~Gv~i~dvr~~p~~l~v~~g~i~~i~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~~D 222 (350)
T 2g0t_A 143 NGTRIIDIRIPPLELDVLRGGIYRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVID 222 (350)
T ss_dssp HTCCEEESSSCCSSCCCCCSGGGGCCSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECCGG
T ss_pred CCCEEEEeCcCCCcccccccceeeecceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCCCC
Confidence 35578887443322221112233345667898887654 5667888899999999877776555533 22211112
Q ss_pred ccCchhHHHHHHHHHHHHHhhhhcCcceEEEEEecCC--CccHHHHHHhHhcC-CccEEec
Q 009394 283 SFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGR--YSGFIAMYATIASR-DVDCCLI 340 (535)
Q Consensus 283 S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR--~sG~LAl~aaLAs~-~ad~ilI 340 (535)
.+-++-+.-.....+..+. ..+..+.|||-.|. +..+.....+|..+ .+|.+++
T Consensus 223 ~~~~~~~ag~~e~~i~~~~----~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl 279 (350)
T 2g0t_A 223 AVPADFVSGVVEKAVLKLE----KTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFL 279 (350)
T ss_dssp GSBGGGHHHHHHHHHHHHH----HTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEE
T ss_pred ceecchhhHHHHhhHHHhh----hcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEE
Confidence 4445544444433343333 22345999999984 45665544544433 6888888
No 92
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=34.40 E-value=25 Score=32.33 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=19.5
Q ss_pred CCcHHHHHHHHHHh----CCcEEEEecCCcc
Q 009394 220 GHDTSKIVDSIQDR----GINQVYVLGGDGT 246 (535)
Q Consensus 220 ~~d~~ki~~~l~~~----~Id~LvvIGGdgS 246 (535)
+.|.+.|.+.|++. +.|.+|+.||-|.
T Consensus 50 ~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~ 80 (178)
T 2pbq_A 50 PDERDLIEKTLIELADEKGCSLILTTGGTGP 80 (178)
T ss_dssp CSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 55666666666553 7899999999764
No 93
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=34.40 E-value=2.1e+02 Score=27.53 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=59.6
Q ss_pred CchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceecc--CCCCcHHHHHHHHHHhCC
Q 009394 158 PGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTS--RGGHDTSKIVDSIQDRGI 235 (535)
Q Consensus 158 pGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTs--R~~~d~~ki~~~l~~~~I 235 (535)
|.-....+.+++.+...++..+|.-+. +-..-+. ..+.......+...|+.+.... .+..++...++.+++.+.
T Consensus 130 ~~~~~~~~~~~~~l~~~~g~~~iaii~-~~~~~~~---~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~~ 205 (366)
T 3td9_A 130 FIDPFQGAAMAVFAYKNLGAKRVVVFT-DVEQDYS---VGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSFNP 205 (366)
T ss_dssp CCHHHHHHHHHHHHHHTSCCCEEEEEE-ETTCHHH---HHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHHhcCCcEEEEEE-eCCCcHH---HHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhcCC
Confidence 433445566666664444555555442 1100000 0111112233455677665543 224577888999999999
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeec
Q 009394 236 NQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIP 270 (535)
Q Consensus 236 d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 270 (535)
+++|+.+-+. .+..+.+.+++.|+++++++..
T Consensus 206 d~v~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~ 237 (366)
T 3td9_A 206 DAIYITGYYP---EIALISRQARQLGFTGYILAGD 237 (366)
T ss_dssp SEEEECSCHH---HHHHHHHHHHHTTCCSEEEECG
T ss_pred CEEEEccchh---HHHHHHHHHHHcCCCceEEeeC
Confidence 9998865432 2444667778889988877643
No 94
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=34.15 E-value=1.1e+02 Score=29.62 Aligned_cols=86 Identities=21% Similarity=0.283 Sum_probs=59.8
Q ss_pred CCcHHHHHHHHHHh-C----CcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC--cccCchh-HHH
Q 009394 220 GHDTSKIVDSIQDR-G----INQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID--KSFGFDT-AVE 291 (535)
Q Consensus 220 ~~d~~ki~~~l~~~-~----Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD--~S~GFdT-Av~ 291 (535)
+.|+..+-+.|.++ . =|-++|=||-|=+..|....++ .|+.++|+|+-|- ...+...+ ..+--++ ++.
T Consensus 65 ~DDya~m~Evl~RR~~r~~~PDLiliDGGkgQl~~a~~vl~~---lg~~i~v~glaK~-~e~l~~~~~~~~l~~~s~~l~ 140 (220)
T 2nrt_A 65 PDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALKE---IGKDCPVVGLAKK-EETVVFENREIHLPHDHPVLR 140 (220)
T ss_dssp CCHHHHHHHHHHHHHTTSCCCSEEEESSSHHHHHHHHHHHHH---TTCCCCEEEECTT-TCCEEETTEEECCCTTCHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHHHHH---cCCCCeEEEEECC-CcEEEeCCCeeecCCCCHHHH
Confidence 46888888888776 2 4777777999999888877664 4888999999994 12332221 2333333 677
Q ss_pred HHHHHHHHHHhhhhcCcc
Q 009394 292 EAQRAISAAHVEAESFEN 309 (535)
Q Consensus 292 ~~~~ai~~i~~~A~S~~~ 309 (535)
.+++.=|.+|.-|.+.++
T Consensus 141 llq~iRDEaHRFAIt~hr 158 (220)
T 2nrt_A 141 LLVQIRDETHRFAVSYHR 158 (220)
T ss_dssp HHHHHHHHHHHHHHGGGH
T ss_pred hhhhhcchhhhccccccc
Confidence 778877888888877654
No 95
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=33.45 E-value=1.9e+02 Score=26.92 Aligned_cols=69 Identities=13% Similarity=0.017 Sum_probs=45.2
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccC--CCCc
Q 009394 145 DVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSR--GGHD 222 (535)
Q Consensus 145 ~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR--~~~d 222 (535)
..+||++...-.-|-...++.++-+.+.. ++. ++.-+ .+.. ....
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~g~~~~a~~-~g~-~~~~~-------------------------------~~~~~~~~~~ 51 (304)
T 3o1i_D 5 DEKICAIYPHLKDSYWLSVNYGMVSEAEK-QGV-NLRVL-------------------------------EAGGYPNKSR 51 (304)
T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHH-HTC-EEEEE-------------------------------ECSSTTCHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHH-cCC-eEEEE-------------------------------cCCCCCCHHH
Confidence 46899999877777778888888777654 332 22211 0111 1122
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcc
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGT 246 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS 246 (535)
..+.++.+...++|++++.+.+..
T Consensus 52 ~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 52 QEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp HHHHHHHHHHHTCSEEEECCSSTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCChh
Confidence 346778888899999999987755
No 96
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=33.35 E-value=3.2e+02 Score=25.99 Aligned_cols=133 Identities=11% Similarity=0.006 Sum_probs=68.1
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCC-Cc
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGG-HD 222 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~d 222 (535)
+..+||++...-.-|-...++.++.+.+.. ++. ++. +-.+... ..
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~l~--------------------------------~~~~~~~~~~ 49 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKS-VGL-PYV--------------------------------PLTTEGSSEK 49 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-HTC-CEE--------------------------------EEECTTCHHH
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EecCCCCHHH
Confidence 345899999766667777788887776643 221 111 0011111 12
Q ss_pred HHHHHHHHHHhC--CcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCc----c-CCCcccCchhHHHHHHH
Q 009394 223 TSKIVDSIQDRG--INQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDI----P-IIDKSFGFDTAVEEAQR 295 (535)
Q Consensus 223 ~~ki~~~l~~~~--Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI----~-gtD~S~GFdTAv~~~~~ 295 (535)
....++.|...+ +|++++.+.+... ...+.+.+.+.+ ++||.+-..+++.- . ....++++|-. .....
T Consensus 50 ~~~~i~~l~~~~~~vdgiIi~~~~~~~--~~~~~~~~~~~~--iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~-~~g~~ 124 (332)
T 2rjo_A 50 GIADIRALLQKTGGNLVLNVDPNDSAD--ARVIVEACSKAG--AYVTTIWNKPKDLHPWDYNPNYVAHLSYDGV-AYGEE 124 (332)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCSSHHH--HHHHHHHHHHHT--CEEEEESCCCTTCCGGGGTTTEEEEEECCHH-HHHHH
T ss_pred HHHHHHHHHHCCCCCCEEEEeCCCHHH--HHHHHHHHHHCC--CeEEEECCCCCcccchhcccceeEEEccChH-HHHHH
Confidence 345677788888 9999998876532 122334444445 56776543333210 0 01234555532 12223
Q ss_pred HHHHHHhhhhcCcceEEEEEe
Q 009394 296 AISAAHVEAESFENGIGVVKL 316 (535)
Q Consensus 296 ai~~i~~~A~S~~~rv~iVEv 316 (535)
+.+.+.....++ ++|.++--
T Consensus 125 a~~~L~~~~~G~-~~I~~i~g 144 (332)
T 2rjo_A 125 TATQLFKSMGGK-GGVVALGG 144 (332)
T ss_dssp HHHHHHHHTTTC-EEEEEEEC
T ss_pred HHHHHHHHcCCC-CeEEEEEC
Confidence 333333322344 57887753
No 97
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=33.09 E-value=2.5e+02 Score=26.46 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=39.8
Q ss_pred CCcHHHHHHHHHHhCCcEEEEecCCc---------chHHHHHHHHHHHHcCCCeeEeeecc
Q 009394 220 GHDTSKIVDSIQDRGINQVYVLGGDG---------TQKGASAIFEEIRRRGLKVAVAGIPK 271 (535)
Q Consensus 220 ~~d~~ki~~~l~~~~Id~LvvIGGdg---------S~~~A~~L~~~~~~~g~~i~VvgIPk 271 (535)
..++++.++.+++.|++++=+..... +...+..+.+.++++|+.+..++.|.
T Consensus 29 ~~~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~ 89 (295)
T 3cqj_A 29 GECWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPSMCLSA 89 (295)
T ss_dssp CSCHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEEEGG
T ss_pred CCCHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 45789999999999999998776543 23446678888888999877676664
No 98
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=32.86 E-value=50 Score=26.05 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=39.9
Q ss_pred eeccCCCCcHHHHHHHHHHhCCc---------EEEEecCCcchHHHHHHHHHHHHcCCCee
Q 009394 214 LGTSRGGHDTSKIVDSIQDRGIN---------QVYVLGGDGTQKGASAIFEEIRRRGLKVA 265 (535)
Q Consensus 214 LGTsR~~~d~~ki~~~l~~~~Id---------~LvvIGGdgS~~~A~~L~~~~~~~g~~i~ 265 (535)
+|+-+...+.+++.+.|+..++. +-|.+|.+.+...|..+.+.+++.|++..
T Consensus 14 vGaF~~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~ 74 (81)
T 1uta_A 14 CGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNC 74 (81)
T ss_dssp CCEESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSCC
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCcE
Confidence 34545556678888999988887 45788999898889998888888787643
No 99
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=32.34 E-value=46 Score=33.66 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=39.7
Q ss_pred CcHHHHHHHHHHhCC---cEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeecccc
Q 009394 221 HDTSKIVDSIQDRGI---NQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTI 273 (535)
Q Consensus 221 ~d~~ki~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 273 (535)
+..+++++.+.++++ |.++-|||--.++.|..++-.. .++ +++|.||-|.
T Consensus 74 ~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~-~rg--ip~i~IPTT~ 126 (354)
T 1xah_A 74 EQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATL-LRG--VHFIQVPTTI 126 (354)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECST
T ss_pred HHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHHh-ccC--CCEEEECCcc
Confidence 346789999999999 8999999988888777665321 234 7899999996
No 100
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=32.20 E-value=33 Score=34.50 Aligned_cols=88 Identities=23% Similarity=0.318 Sum_probs=53.0
Q ss_pred EEEEEccccccccCCCeeeCCHhHHhchhcccCc-ce-eccCC--CCcHHHHHHHHHHhCCcEEEEecCCcc--------
Q 009394 179 KVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGT-IL-GTSRG--GHDTSKIVDSIQDRGINQVYVLGGDGT-------- 246 (535)
Q Consensus 179 ~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs-~L-GTsR~--~~d~~ki~~~l~~~~Id~LvvIGGdgS-------- 246 (535)
..+-|-+|-.|- ...-+...+..+...|=. +. =|||. ...++..+..++..||+.++++.||-.
T Consensus 44 d~vsVT~~~~g~----~r~~t~~~a~~i~~~g~~~i~Hltc~~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~ 119 (310)
T 3apt_A 44 AFVSITYGAMGS----TRERSVAWAQRIQSLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRP 119 (310)
T ss_dssp SEEEECCCSTTC----SHHHHHHHHHHHHHTTCCBCEEEECTTSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCC
T ss_pred CEEEEecCCCCC----cchhHHHHHHHHHHhCCCeEEEeecCCCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCC
Confidence 455566665543 122233344444423221 11 14554 345778888899999999999999932
Q ss_pred ----hHHHHHHHHHHHHc-C--CCeeEeeec
Q 009394 247 ----QKGASAIFEEIRRR-G--LKVAVAGIP 270 (535)
Q Consensus 247 ----~~~A~~L~~~~~~~-g--~~i~VvgIP 270 (535)
+..|..|.+.+++. | ++|.|.+-|
T Consensus 120 ~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yP 150 (310)
T 3apt_A 120 HPEGFRYAAELVALIRERYGDRVSVGGAAYP 150 (310)
T ss_dssp CTTSCSSHHHHHHHHHHHHGGGSEEEEEECT
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 44577777777765 4 566666666
No 101
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=31.86 E-value=52 Score=33.23 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHHhCC---cEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeecccc
Q 009394 221 HDTSKIVDSIQDRGI---NQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTI 273 (535)
Q Consensus 221 ~d~~ki~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 273 (535)
+..+++++.+.++++ |.++-+||--.++.|..++-.. .+| +++|.||-|.
T Consensus 69 ~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~-~rg--ip~i~IPTTl 121 (343)
T 3clh_A 69 HSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIY-FRG--IDFINIPTTL 121 (343)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECSH
T ss_pred HHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHh-ccC--CCEEEeCCch
Confidence 346899999999999 9999999988887777665321 234 7899999996
No 102
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=31.84 E-value=86 Score=29.19 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=35.5
Q ss_pred eeccCCCCcHHHHHHHHHHhCCcEEEEecCCcc-hHHHHHHHHHHHHcCCCeeEeeeccc
Q 009394 214 LGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGT-QKGASAIFEEIRRRGLKVAVAGIPKT 272 (535)
Q Consensus 214 LGTsR~~~d~~ki~~~l~~~~Id~LvvIGGdgS-~~~A~~L~~~~~~~g~~i~VvgIPkT 272 (535)
.+--|..+.+.+++++.++.+++.+|.+-|-.. +-+. ++- ....||||+|-.
T Consensus 41 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~ 93 (169)
T 3trh_A 41 LSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGT--IAA-----HTLKPVIGVPMA 93 (169)
T ss_dssp CCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHH--HHH-----TCSSCEEEEECC
T ss_pred EcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH--HHh-----cCCCCEEEeecC
Confidence 334466677888899999999997777655444 4332 222 346889999964
No 103
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=31.03 E-value=3.6e+02 Score=25.80 Aligned_cols=73 Identities=11% Similarity=0.158 Sum_probs=46.4
Q ss_pred CCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCc
Q 009394 143 SDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHD 222 (535)
Q Consensus 143 ~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d 222 (535)
.+.+||||++.- .=|.++++-.++...|.. .| | .++.-+++. +.+..|. ...
T Consensus 6 ~~~~~igi~q~~-~hp~ld~~~~G~~~~L~~-~G----------~---~~g~nv~~~------~~~a~gd-------~~~ 57 (302)
T 3lkv_A 6 AKTAKVAVSQIV-EHPALDATRQGLLDGLKA-KG----------Y---EEGKNLEFD------YKTAQGN-------PAI 57 (302)
T ss_dssp -CCEEEEEEESC-CCHHHHHHHHHHHHHHHH-TT----------C---CBTTTEEEE------EEECTTC-------HHH
T ss_pred cCCceEEEEEee-cChhHHHHHHHHHHHHHh-hC----------c---ccCCcEEEE------EEeCCCC-------HHH
Confidence 467899999874 679999999999988864 22 1 122212221 1111111 123
Q ss_pred HHHHHHHHHHhCCcEEEEecC
Q 009394 223 TSKIVDSIQDRGINQVYVLGG 243 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGG 243 (535)
...+++.|...+.|.+|.||.
T Consensus 58 ~~~~~~~l~~~~~DlIiai~t 78 (302)
T 3lkv_A 58 AVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp HHHHHHHHHTTCCSEEEEESH
T ss_pred HHHHHHHHHhcCCcEEEEcCC
Confidence 567889999999998888763
No 104
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=30.52 E-value=98 Score=31.06 Aligned_cols=88 Identities=23% Similarity=0.291 Sum_probs=53.8
Q ss_pred EEEEEccccccccCCCeeeCCHhHHhchhcccC--cce-eccCC--CCcHHHHHHHHHHhCCcEEEEecCCcc------h
Q 009394 179 KVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGG--TIL-GTSRG--GHDTSKIVDSIQDRGINQVYVLGGDGT------Q 247 (535)
Q Consensus 179 ~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GG--s~L-GTsR~--~~d~~ki~~~l~~~~Id~LvvIGGdgS------~ 247 (535)
..+-|-+|-.|... +-+...+..+.+.=| .+. =|||. ...++..+..+...||+.++++.||-. +
T Consensus 54 ~fvsVT~gagg~~r----~~t~~~a~~i~~~~g~~~v~Hltc~~~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~ 129 (304)
T 3fst_A 54 KFVSVTYGANSGER----DRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPE 129 (304)
T ss_dssp SEEEECCCTTSSCH----HHHHHHHHHHHHHHCCCEEEEEESTTSCHHHHHHHHHHHHHTTCCEEEEECCCCC------C
T ss_pred CEEEEeeCCCCcch----hHHHHHHHHHHHHhCCCeeEEeecCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCC
Confidence 45566666655432 222233344444223 121 14554 346778888899999999999999843 3
Q ss_pred HHHHHHHHHHHH-cCCCeeEeeec
Q 009394 248 KGASAIFEEIRR-RGLKVAVAGIP 270 (535)
Q Consensus 248 ~~A~~L~~~~~~-~g~~i~VvgIP 270 (535)
..|..|.+.+++ .+++|.|.+-|
T Consensus 130 ~~A~dLv~~ir~~~~f~IgvA~yP 153 (304)
T 3fst_A 130 MYASDLVTLLKEVADFDISVAAYP 153 (304)
T ss_dssp CCHHHHHHHHHHHCCCEEEEEECT
T ss_pred CCHHHHHHHHHHcCCCeEEEEeCC
Confidence 347777777765 35777777777
No 105
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=29.77 E-value=66 Score=29.80 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=34.8
Q ss_pred eeccCCCCcHHHHHHHHHHhCCcEEEEecCC-cchHHHHHHHHHHHHcCCCeeEeeecccc
Q 009394 214 LGTSRGGHDTSKIVDSIQDRGINQVYVLGGD-GTQKGASAIFEEIRRRGLKVAVAGIPKTI 273 (535)
Q Consensus 214 LGTsR~~~d~~ki~~~l~~~~Id~LvvIGGd-gS~~~A~~L~~~~~~~g~~i~VvgIPkTI 273 (535)
.+--|..+.+.+++++.++.+++.+|.+-|- +.+-+.. +- ....||||+|-..
T Consensus 38 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~ 91 (163)
T 3ors_A 38 VSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMV--AS-----LTTLPVIGVPIET 91 (163)
T ss_dssp CCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHH--HH-----HCSSCEEEEEECC
T ss_pred ECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHH--Hh-----ccCCCEEEeeCCC
Confidence 3344666677788888888899977766544 4444432 22 1457899999654
No 106
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=29.34 E-value=28 Score=35.60 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccC
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFG 285 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~G 285 (535)
..+++++.+++ +.|.+|-|||--.++.|..++-. ++ +++|.||-| ++||-..+
T Consensus 83 ~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~~---~~--~p~i~IPTT-----a~tgSevt 135 (376)
T 1kq3_A 83 EIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAYK---LK--KPVVIVPTI-----ASTDAPCS 135 (376)
T ss_dssp HHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHHH---TT--CCEEEEESS-----CCCSCTTS
T ss_pred HHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHHh---cC--CCEEEecCc-----cccCcccC
Confidence 45677777777 99999999998888888877732 34 679999998 66664444
No 107
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=28.82 E-value=72 Score=31.73 Aligned_cols=110 Identities=12% Similarity=0.032 Sum_probs=66.9
Q ss_pred eeCCHhHHhchhccc-CcceeccCC-CCcHHHHHHHHHHhCCcEEEEe----cCCcchHHHHHHHHHHHH-c-CCCeeEe
Q 009394 196 IPLTPKIVNGIHKRG-GTILGTSRG-GHDTSKIVDSIQDRGINQVYVL----GGDGTQKGASAIFEEIRR-R-GLKVAVA 267 (535)
Q Consensus 196 ~~L~~~~V~~i~~~G-Gs~LGTsR~-~~d~~ki~~~l~~~~Id~LvvI----GGdgS~~~A~~L~~~~~~-~-g~~i~Vv 267 (535)
++++++.+-.....+ +...-||-- ..++.++.+.+.+.+ +.+++| |=.||+.+|...++.+.+ + +.+|.||
T Consensus 44 ~di~~~efy~~~~~~~~~~p~TSqps~~~~~~~f~~l~~~g-~~ii~i~iSs~LSGTy~sA~~aa~~~~e~~~~~~I~Vi 122 (297)
T 3nyi_A 44 VDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSFVEQG-FPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVI 122 (297)
T ss_dssp TTBCHHHHHHHHHHCTTCCCEEECCCHHHHHHHHHHHHTTT-CCEEEEESCTTTCSHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCHHHHHHHHHhCCCCCceecCCCHHHHHHHHHHHHHCC-CeEEEEECCCcHhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 468888887777666 567777764 356778888887778 777776 357889988887766533 3 4455554
Q ss_pred eeccccccCccCCCcccCchhHHHHHHHHHH----------HHHhhhhcCcceEEEEEec
Q 009394 268 GIPKTIDNDIPIIDKSFGFDTAVEEAQRAIS----------AAHVEAESFENGIGVVKLM 317 (535)
Q Consensus 268 gIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~----------~i~~~A~S~~~rv~iVEvM 317 (535)
|.- -.|.|..=.+..+++.++ .+..-... -+-+|+|+..
T Consensus 123 ------DS~----~~s~g~g~~v~~A~~l~~~G~s~~eI~~~l~~~~~~-~~~~f~v~~L 171 (297)
T 3nyi_A 123 ------DSK----QNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMAS-ARIFFTVGSL 171 (297)
T ss_dssp ------ECS----CCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CEEEEECSCS
T ss_pred ------eCC----chHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhh-cEEEEEECCH
Confidence 211 125555555555554432 22222222 2457888765
No 108
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=28.43 E-value=2.1e+02 Score=26.16 Aligned_cols=79 Identities=10% Similarity=-0.132 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHHHHHHHHHhh
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVE 303 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~ 303 (535)
.+.++.|...++|++++.+.+.+. ...+.+.+.+ +++|.+-. +.+. -.++++|-. .....+.+.+..
T Consensus 45 ~~~~~~l~~~~vdgiI~~~~~~~~----~~~~~~~~~~--iPvV~~~~----~~~~-~~~V~~d~~-~~~~~a~~~L~~- 111 (276)
T 2h0a_A 45 RYLENTTLAYLTDGLILASYDLTE----RFEEGRLPTE--RPVVLVDA----QNPR-YDSVYLDNR-LGGRLAGAYLAR- 111 (276)
T ss_dssp ---------CCCSEEEEESCCCC----------CCSCS--SCEEEESS----CCTT-SEEEEECSH-HHHHHHHHHHTT-
T ss_pred HHHHHHHHhCCCCEEEEecCCCCH----HHHHHHhhcC--CCEEEEec----cCCC-CCEEEEccH-HHHHHHHHHHHH-
Confidence 356677788899999999987652 1223333334 56675533 3322 335555532 122223333332
Q ss_pred hhcCcceEEEEEec
Q 009394 304 AESFENGIGVVKLM 317 (535)
Q Consensus 304 A~S~~~rv~iVEvM 317 (535)
.++ ++|.++--.
T Consensus 112 -~G~-~~i~~i~~~ 123 (276)
T 2h0a_A 112 -FPG-PIFAIAVEE 123 (276)
T ss_dssp -SSS-CEEEEEECC
T ss_pred -cCC-CeEEEEecC
Confidence 244 578887543
No 109
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=28.41 E-value=3.6e+02 Score=24.98 Aligned_cols=88 Identities=13% Similarity=0.080 Sum_probs=50.8
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CCcHH
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GHDTS 224 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~~ 224 (535)
.+|||+...-.-|-...++.++.+.+.. ++..++. +-.+.. .....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~--------------------------------~~~~~~~~~~~~ 49 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQLL--------------------------------MNDSQNDQSKQN 49 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHT-CTTEEEE--------------------------------EEECTTCHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHh-cCCeEEE--------------------------------EecCCCCHHHHH
Confidence 4789998766667777788887776643 2210211 101111 11234
Q ss_pred HHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeec
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIP 270 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 270 (535)
..++.+...++|++++.+.+.+.. ....+.+.+.+ ++||.+-
T Consensus 50 ~~~~~~~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~~~ 91 (309)
T 2fvy_A 50 DQIDVLLAKGVKALAINLVDPAAA--GTVIEKARGQN--VPVVFFN 91 (309)
T ss_dssp HHHHHHHHTTCSEEEECCSSGGGH--HHHHHHHHTTT--CCEEEES
T ss_pred HHHHHHHHcCCCEEEEeCCCcchh--HHHHHHHHHCC--CcEEEec
Confidence 567788889999999988776531 12234444445 5566553
No 110
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=28.36 E-value=29 Score=35.05 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDI 277 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI 277 (535)
..+++ +.+++.+.|.++-|||--.++.|..++ +. ++ +++|.||-|.-.|-
T Consensus 77 ~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~--~~--~p~i~IPTT~~tgs 126 (354)
T 3ce9_A 77 EIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FL--RK--LPFISVPTSTSNDG 126 (354)
T ss_dssp HHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HH--HT--CCEEEEESCCSSGG
T ss_pred HHHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hh--cC--CCEEEecCcccCCC
Confidence 35666 777778999999999988888888776 32 34 67999999976543
No 111
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=27.93 E-value=1.8e+02 Score=27.65 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=39.2
Q ss_pred hhcccCcceeccC---CCCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 206 IHKRGGTILGTSR---GGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 206 i~~~GGs~LGTsR---~~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
+...|+.+..... +..++..+++.|++.+.+++|+.+.+. . +..+.+.+++.|+++++++.
T Consensus 162 l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~i~~~~~~~-~--a~~~~~~~~~~g~~~~~~~~ 225 (346)
T 1usg_A 162 LKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYP-E--MGQMLRQARSVGLKTQFMGP 225 (346)
T ss_dssp HHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHH-H--HHHHHHHHHHTTCCCEEEEC
T ss_pred HHHcCCEEEEEeccCCCCcCHHHHHHHHHhcCCCEEEEcCcch-H--HHHHHHHHHHcCCCCeEEec
Confidence 3445666554322 234667788888888999998876322 2 34456677788988776654
No 112
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.75 E-value=97 Score=25.70 Aligned_cols=57 Identities=23% Similarity=0.427 Sum_probs=46.6
Q ss_pred hhcccCcceeccCCCCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCC
Q 009394 206 IHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLK 263 (535)
Q Consensus 206 i~~~GGs~LGTsR~~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~ 263 (535)
-++.+|..|.|.-+.+|+..|++.++.+|---++.+-|. |....+.+..++++.|..
T Consensus 23 khnypgryirtatssqdirdiiksmkdngkplvvfvnga-sqndvnefqneakkegvs 79 (112)
T 2lnd_A 23 KHNYPGRYIRTATSSQDIRDIIKSMKDNGKPLVVFVNGA-SQNDVNEFQNEAKKEGVS 79 (112)
T ss_dssp HHHSCTTTEEEECSHHHHHHHHHHHTTCCSCEEEEECSC-CHHHHHHHHHHHHHHTCE
T ss_pred hcCCCCceeeeccchhhHHHHHHHHHhcCCeEEEEecCc-ccccHHHHHHHHHhcCcc
Confidence 467788888888888899999999999998887777775 566678888888888865
No 113
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=27.53 E-value=71 Score=29.88 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=34.5
Q ss_pred eeccCCCCcHHHHHHHHHHhCCcEEEEecCC-cchHHHHHHHHHHHHcCCCeeEeeeccc
Q 009394 214 LGTSRGGHDTSKIVDSIQDRGINQVYVLGGD-GTQKGASAIFEEIRRRGLKVAVAGIPKT 272 (535)
Q Consensus 214 LGTsR~~~d~~ki~~~l~~~~Id~LvvIGGd-gS~~~A~~L~~~~~~~g~~i~VvgIPkT 272 (535)
.+--|..+.+.+++++.++.+++.+|.+.|- +.+-+. ++- ....||||+|-.
T Consensus 47 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~ 99 (174)
T 3kuu_A 47 VSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGM--LAA-----KTLVPVLGVPVQ 99 (174)
T ss_dssp CCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHH--HHH-----TCSSCEEEEEEC
T ss_pred EcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH--HHh-----ccCCCEEEeeCC
Confidence 3344666677888888888899977766554 444433 222 346889999965
No 114
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=27.38 E-value=3.6e+02 Score=24.69 Aligned_cols=126 Identities=10% Similarity=0.025 Sum_probs=65.7
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCC-CcHH
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGG-HDTS 224 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~d~~ 224 (535)
.+||++...-.-|-...+++++-+.+.. ++ .+++-. ++... ....
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~-~g-~~~~~~--------------------------------~~~~~~~~~~ 47 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADK-LG-YNLVVL--------------------------------DSQNNPAKEL 47 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH-HT-CEEEEE--------------------------------ECTTCHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHH-cC-cEEEEe--------------------------------CCCCCHHHHH
Confidence 3788888766667777788887776653 22 222210 11111 1123
Q ss_pred HHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC--cccCchhHHHHHHHHHHHHHh
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID--KSFGFDTAVEEAQRAISAAHV 302 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD--~S~GFdTAv~~~~~ai~~i~~ 302 (535)
+.++.+...++|++++.+.+.... ..+.+.+.+.+ +|||.+ |++.+..+ .+++.|-. .....+.+.+..
T Consensus 48 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~i----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~~ 118 (271)
T 2dri_A 48 ANVQDLTVRGTKILLINPTDSDAV--GNAVKMANQAN--IPVITL----DRQATKGEVVSHIASDNV-LGGKIAGDYIAK 118 (271)
T ss_dssp HHHHHHTTTTEEEEEECCSSTTTT--HHHHHHHHHTT--CCEEEE----SSCCSSSCCSEEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCChHHH--HHHHHHHHHCC--CcEEEe----cCCCCCCceeEEEecChH-HHHHHHHHHHHH
Confidence 566778888999999987654321 11234444555 456643 55544322 35666632 122223333332
Q ss_pred hhhcCcceEEEEE
Q 009394 303 EAESFENGIGVVK 315 (535)
Q Consensus 303 ~A~S~~~rv~iVE 315 (535)
.... +++|.++-
T Consensus 119 ~g~g-~~~I~~i~ 130 (271)
T 2dri_A 119 KAGE-GAKVIELQ 130 (271)
T ss_dssp HHCT-TCEEEEEE
T ss_pred HcCC-CCeEEEEE
Confidence 2222 35787775
No 115
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=26.92 E-value=2.1e+02 Score=31.27 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=56.0
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee-ccccccCccCCCcccCchhHHHHHHHHHHHHHh
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI-PKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHV 302 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI-PkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~ 302 (535)
...++.+++.--+.-++.|.--|..+|..|.+. |.+.--||| |.+|.--=..+-.-...-||+-.++++...
T Consensus 310 ~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~a----GAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~--- 382 (556)
T 4af0_A 310 IEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAA----GADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASR--- 382 (556)
T ss_dssp HHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH----TCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGG---
T ss_pred HHHHHHHHhhCCcceEEeccccCHHHHHHHHHc----CCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHH---
Confidence 344455555544445555555666666666543 666555666 555432111112223456777666554322
Q ss_pred hhhcCcceEEEEEecC-CCccHHHHHHhHhcCCccEEecCC
Q 009394 303 EAESFENGIGVVKLMG-RYSGFIAMYATIASRDVDCCLIPE 342 (535)
Q Consensus 303 ~A~S~~~rv~iVEvMG-R~sG~LAl~aaLAs~~ad~ilIPE 342 (535)
.++.||===| |++|.+|.+ ||. |||+|.+--
T Consensus 383 ------~~vpvIADGGI~~sGDi~KA--laa-GAd~VMlGs 414 (556)
T 4af0_A 383 ------FGIPCIADGGIGNIGHIAKA--LAL-GASAVMMGG 414 (556)
T ss_dssp ------GTCCEEEESCCCSHHHHHHH--HHT-TCSEEEEST
T ss_pred ------cCCCEEecCCcCcchHHHHH--hhc-CCCEEEEch
Confidence 2344544333 789999864 555 799998753
No 116
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=26.53 E-value=33 Score=36.28 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhH
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTA 289 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTA 289 (535)
.+++++.+++ +.|.+|-|||--.++.|..++-. ++ +++|.||-| ++||-..|--+.
T Consensus 135 v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~~---~g--iP~I~IPTT-----AgtgSevt~~av 190 (450)
T 1ta9_A 135 LDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIAHS---MN--LPSIICPTT-----ASSDAATSSLSV 190 (450)
T ss_dssp HHHHHTTSCT-TCCEEEEEESHHHHHHHHHHHHH---TT--CCEEEEESS-----CSCSCTTCSEEE
T ss_pred HHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHHHh---cC--CCEEEEeCC-----CccCcccCCceE
Confidence 4566666667 89999999998889888877732 34 679999999 555544444333
No 117
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=25.98 E-value=27 Score=31.30 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=35.8
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCC--CeeEeeecccccc
Q 009394 221 HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGL--KVAVAGIPKTIDN 275 (535)
Q Consensus 221 ~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~--~i~VvgIPkTIDN 275 (535)
.+.+++++.|++.+++-++|+||-.-+..... .++ .+.+.-+|+.+-+
T Consensus 80 ~~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l~-------~~lvDel~l~~~p~~lG~ 129 (168)
T 1cz3_A 80 GSPADVVKFLEGKGYERVAVIGGKTVFTEFLR-------EKLVDELFVTVEPYVFGK 129 (168)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEECHHHHHHHHH-------TTCCSEEEEEECSEEESS
T ss_pred CCHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-------CCCCCEEEEEEeceecCC
Confidence 46889999999999999999999776654433 222 3667788888753
No 118
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=25.79 E-value=22 Score=31.89 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCcc
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIP 278 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~ 278 (535)
+.+++++.|++.+.+-++||||-.-++.+..+.+ .+.+--+|..++.|..
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~~ 130 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQPHLD-------RMVLSRVPGEYEGDTY 130 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCS-------EEEEEEEEEECCCSEE
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHHhCC-------EEEEEEEccccccCEE
Confidence 6788889999888889999999877766554332 3667778988877753
No 119
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=25.61 E-value=3.6e+02 Score=25.84 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcC
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRG 261 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g 261 (535)
..+.+.+.++++++|.++.. -++....+..+.+.+++.|
T Consensus 60 ~~~~l~~~~~~~~~d~vi~~-~~~~~~~~a~~~~~l~~~g 98 (331)
T 2pn1_A 60 YIDHLLTLCQDEGVTALLTL-IDPELGLLAQATERFQAIG 98 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEES-SHHHHHHHHHTHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCEEEeC-CchhHHHHHHHHHHHHhCC
Confidence 36788888888999977653 2222222333455554444
No 120
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=25.45 E-value=2.8e+02 Score=27.09 Aligned_cols=106 Identities=12% Similarity=0.032 Sum_probs=60.3
Q ss_pred CCchhHHHHHHHHHHHHhcCCeEEEEEcc-ccccccCCCeeeCCHhHHhchhcccCcceeccCC---CCcHHHHHHH--H
Q 009394 157 CPGLNTVIREIVCGLYYMYGVHKVLGIEG-GYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG---GHDTSKIVDS--I 230 (535)
Q Consensus 157 apGmNavIr~vv~~l~~~~~~~~V~Gi~~-G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~---~~d~~ki~~~--l 230 (535)
+|--+...+.+++.+...++..+|.-+.. ... +. ..+.....+.+...|+.+...... ..++...+.. |
T Consensus 121 ~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~--~g---~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l 195 (391)
T 3eaf_A 121 APDYSTQACSGLAFLASEFGQGKLALAYDSKVA--YS---RSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREM 195 (391)
T ss_dssp SCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCH--HH---HTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEEecCCh--hH---HHHHHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHH
Confidence 34445566666766654345555554432 110 00 111111223344567766654332 3467888888 9
Q ss_pred HHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeec
Q 009394 231 QDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIP 270 (535)
Q Consensus 231 ~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 270 (535)
++.+.|++|+.+ ++. .+..+.+.+++.|+++++++..
T Consensus 196 ~~~~~dav~~~~-~~~--~~~~~~~~~~~~g~~~~~~~~~ 232 (391)
T 3eaf_A 196 LAADPDYVWCGN-TIS--SCSLLGRAMAKVGLDAFLLTNV 232 (391)
T ss_dssp HTTCCSEEEECS-CHH--HHHHHHHHHHHHTCCCEEEECG
T ss_pred HHcCCCEEEEec-CcH--HHHHHHHHHHHCCCCceEEEec
Confidence 999999887754 332 3445667777889998887654
No 121
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=25.39 E-value=1.2e+02 Score=30.02 Aligned_cols=97 Identities=16% Similarity=0.266 Sum_probs=55.7
Q ss_pred cccccCCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeee---CCHhHHhchhcccCcc
Q 009394 137 EKVYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIP---LTPKIVNGIHKRGGTI 213 (535)
Q Consensus 137 ~~~~~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~---L~~~~V~~i~~~GGs~ 213 (535)
..+||.+....|||.=|| - |.-.|.+.+.+. .+..+++-+-+ ....+ -+|+.+..
T Consensus 16 ~~~~~~~~~~~IgvfDSG--v-GGLtv~~~i~~~----lP~e~~iy~~D-------~a~~PYG~ks~e~i~~-------- 73 (274)
T 3uhf_A 16 ENLYFQSNAMKIGVFDSG--V-GGLSVLKSLYEA----RLFDEIIYYGD-------TARVPYGVKDKDTIIK-------- 73 (274)
T ss_dssp -CCCCCCSCCEEEEEESS--S-TTHHHHHHHHHT----TCCSEEEEEEC-------TTTCCCTTSCHHHHHH--------
T ss_pred ceeeccCCCCeEEEEECC--C-ChHHHHHHHHHH----CCCCCEEEEec-------CCCCCCCCCCHHHHHH--------
Confidence 568888899999999986 2 333477777653 35555543321 11111 22222222
Q ss_pred eeccCCCCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHH-HHHHHHcCCCeeEeee
Q 009394 214 LGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAI-FEEIRRRGLKVAVAGI 269 (535)
Q Consensus 214 LGTsR~~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L-~~~~~~~g~~i~VvgI 269 (535)
-..++++.|++.|+++++|-.- +|... .+++++ .+++||+||
T Consensus 74 --------~~~~~~~~L~~~g~d~IVIACN-----Ta~~~al~~lr~-~~~iPvigi 116 (274)
T 3uhf_A 74 --------FCLEALDFFEQFQIDMLIIACN-----TASAYALDALRA-KAHFPVYGV 116 (274)
T ss_dssp --------HHHHHHHHHTTSCCSEEEECCH-----HHHHHSHHHHHH-HCSSCEECS
T ss_pred --------HHHHHHHHHHHCCCCEEEEeCC-----ChhHHHHHHHHH-hcCCCEEcC
Confidence 1346778999999998777542 22222 234433 256889986
No 122
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=25.20 E-value=3.7e+02 Score=27.70 Aligned_cols=95 Identities=14% Similarity=0.260 Sum_probs=50.9
Q ss_pred cCCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCe-eeCCHhHHhchhcccCcceeccCC
Q 009394 141 FESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNT-IPLTPKIVNGIHKRGGTILGTSRG 219 (535)
Q Consensus 141 ~~~~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~-~~L~~~~V~~i~~~GGs~LGTsR~ 219 (535)
..|..+||.|+-+|| --++.++. +.+..+..+||.. .|-.|...... +. + .
T Consensus 17 ~~p~~m~ilvlG~gg---re~ala~~----l~~s~~v~~v~~~-pgn~g~~~~~~~~~----------------i----~ 68 (442)
T 3lp8_A 17 QGPGSMNVLVIGSGG---REHSMLHH----IRKSTLLNKLFIA-PGREGMSGLADIID----------------I----D 68 (442)
T ss_dssp ---CCEEEEEEECSH---HHHHHHHH----HTTCTTEEEEEEE-ECCGGGTTTSEECC----------------C----C
T ss_pred CCCCCCEEEEECCCh---HHHHHHHH----HHhCCCCCEEEEE-CCChHHhhccceee----------------c----C
Confidence 346779999998874 23344443 4333444566664 34444432111 10 1 2
Q ss_pred CCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEee
Q 009394 220 GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAG 268 (535)
Q Consensus 220 ~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~Vvg 268 (535)
..|.+.+++.++++++|.+++ |....+ +..+++.+++.|+ +++|
T Consensus 69 ~~d~~~l~~~a~~~~id~vv~-g~E~~l--~~~~~~~l~~~Gi--~~~G 112 (442)
T 3lp8_A 69 INSTIEVIQVCKKEKIELVVI-GPETPL--MNGLSDALTEEGI--LVFG 112 (442)
T ss_dssp TTCHHHHHHHHHHTTCCEEEE-CSHHHH--HTTHHHHHHHTTC--EEES
T ss_pred cCCHHHHHHHHHHhCCCEEEE-CCcHHH--HHHHHHHHHhcCC--cEec
Confidence 356788888899999997665 433322 2234555655563 3443
No 123
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=25.02 E-value=63 Score=30.42 Aligned_cols=10 Identities=30% Similarity=0.660 Sum_probs=8.1
Q ss_pred CCeeEeeecc
Q 009394 262 LKVAVAGIPK 271 (535)
Q Consensus 262 ~~i~VvgIPk 271 (535)
..+||||||-
T Consensus 99 T~~PVIGVPv 108 (181)
T 4b4k_A 99 TNLPVIGVPV 108 (181)
T ss_dssp CCSCEEEEEC
T ss_pred CCCCEEEEec
Confidence 3578999997
No 124
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A*
Probab=24.16 E-value=2.5e+02 Score=30.28 Aligned_cols=85 Identities=19% Similarity=0.300 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhCCcEEEEe--------cCCc--chHHHHHHHHHHHHcCCCeeEe----------------eeccccc--
Q 009394 223 TSKIVDSIQDRGINQVYVL--------GGDG--TQKGASAIFEEIRRRGLKVAVA----------------GIPKTID-- 274 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvI--------GGdg--S~~~A~~L~~~~~~~g~~i~Vv----------------gIPkTID-- 274 (535)
++.=++.||..|++++.+= -|.+ -..+=.+|++.+++.|+++++| -+|.-+-
T Consensus 35 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mv~~~GLKlq~vmSFHqCGgNVGD~~~IPLP~WV~~~ 114 (495)
T 1wdp_A 35 LKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDI 114 (495)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTCEEEEEEECSCBCCSTTCSCCBCSCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEeeecCCCCCCcccccCCHHHHHh
Confidence 4556788999999999862 2333 3456678888899999998776 3565553
Q ss_pred ----cCccCCCc---------ccCch--------hHHHHHHHHHHHHHhhhhcC
Q 009394 275 ----NDIPIIDK---------SFGFD--------TAVEEAQRAISAAHVEAESF 307 (535)
Q Consensus 275 ----NDI~gtD~---------S~GFd--------TAv~~~~~ai~~i~~~A~S~ 307 (535)
.||..||. |+|.| |+++...+.+.+.+++-.+.
T Consensus 115 ~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~Dfm~SFr~~F~~~ 168 (495)
T 1wdp_A 115 GESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDF 168 (495)
T ss_dssp HHHCGGGEEECTTCCEEEEEECGGGTTCCCBTTBCHHHHHHHHHHHHHHHTHHH
T ss_pred hccCCCcEEECCCCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 48988885 88888 88999999999888876554
No 125
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=23.77 E-value=2.1e+02 Score=25.47 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=50.2
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhH-HhchhcccCcceeccCC-C-
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKI-VNGIHKRGGTILGTSRG-G- 220 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~-V~~i~~~GGs~LGTsR~-~- 220 (535)
.+.||.+.+.||+.--+..-+-+.. + ... +.+|+- -+. ..+++. ++......-.++|.|-. .
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~--l-~~~-G~eVi~---------lG~--~~p~e~lv~aa~~~~~diV~lS~~~~~ 81 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARA--L-RDA-GFEVVY---------TGL--RQTPEQVAMAAVQEDVDVIGVSILNGA 81 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHH--H-HHT-TCEEEC---------CCS--BCCHHHHHHHHHHTTCSEEEEEESSSC
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHH--H-HHC-CCEEEE---------CCC--CCCHHHHHHHHHhcCCCEEEEEeechh
Confidence 3458999999999866554443322 2 223 345541 111 134443 33344444556665432 2
Q ss_pred --CcHHHHHHHHHHhCC-cEEEEecCCcc
Q 009394 221 --HDTSKIVDSIQDRGI-NQVYVLGGDGT 246 (535)
Q Consensus 221 --~d~~ki~~~l~~~~I-d~LvvIGGdgS 246 (535)
....++++.|++.+. +..+++||.-.
T Consensus 82 ~~~~~~~~i~~L~~~g~~~i~v~vGG~~~ 110 (161)
T 2yxb_A 82 HLHLMKRLMAKLRELGADDIPVVLGGTIP 110 (161)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCEEEEECCC
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence 346778888888876 67788888643
No 126
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1
Probab=23.62 E-value=2.2e+02 Score=30.70 Aligned_cols=85 Identities=24% Similarity=0.364 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhCCcEEEEe--------cCCc--chHHHHHHHHHHHHcCCCeeEe----------------eecccc---
Q 009394 223 TSKIVDSIQDRGINQVYVL--------GGDG--TQKGASAIFEEIRRRGLKVAVA----------------GIPKTI--- 273 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvI--------GGdg--S~~~A~~L~~~~~~~g~~i~Vv----------------gIPkTI--- 273 (535)
++.=++.||..|++++.+= -|.+ -..+=.+|++.+++.|+++++| -+|.-+
T Consensus 36 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mv~~~GLKlq~vmSFHqCGgNVGD~~~IPLP~WV~~~ 115 (498)
T 1fa2_A 36 VEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQI 115 (498)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEHHHHTCSBTTBCCCHHHHHHHHHHHHTTCEEEEEEECSCBCCCTTCCCCBCSCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEeeecCCCCCCcccccCCHHHHHh
Confidence 4556788999999999862 2333 2456678889999999998776 355544
Q ss_pred ---ccCccCCCc---------ccCch--------hHHHHHHHHHHHHHhhhhcC
Q 009394 274 ---DNDIPIIDK---------SFGFD--------TAVEEAQRAISAAHVEAESF 307 (535)
Q Consensus 274 ---DNDI~gtD~---------S~GFd--------TAv~~~~~ai~~i~~~A~S~ 307 (535)
|.||..||. |+|.| |+++...+.+.+.+++-.+.
T Consensus 116 ~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~Dfm~SFr~~F~~~ 169 (498)
T 1fa2_A 116 GDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADF 169 (498)
T ss_dssp TTTCGGGEEECTTCCEEEEEECGGGTTCEEETTEEHHHHHHHHHHHHHHHSHHH
T ss_pred hccCCCceEECCCCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 348988885 88888 88999999999988876554
No 127
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=23.62 E-value=4.3e+02 Score=24.26 Aligned_cols=86 Identities=15% Similarity=0.087 Sum_probs=49.3
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCC-CcHH
Q 009394 146 VHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGG-HDTS 224 (535)
Q Consensus 146 ~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~d~~ 224 (535)
.+||++...-.-|-...++.++.+.+.. ++ .++. +-.+... ....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~~ 48 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQ-LG-YEAT--------------------------------IFDSQNDTAKES 48 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EeCCCCCHHHHH
Confidence 4799998765667777788887776643 22 2221 0011111 1234
Q ss_pred HHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 225 ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
+.++.|...++|++++.+.+.... ....+.+.+.+ ++||.+
T Consensus 49 ~~~~~l~~~~vdgiI~~~~~~~~~--~~~~~~~~~~~--iPvV~~ 89 (290)
T 2fn9_A 49 AHFDAIIAAGYDAIIFNPTDADGS--IANVKRAKEAG--IPVFCV 89 (290)
T ss_dssp HHHHHHHHTTCSEEEECCSCTTTT--HHHHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHcCCCEEEEecCChHHH--HHHHHHHHHCC--CeEEEE
Confidence 567778889999999998765421 11234444455 456654
No 128
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=23.17 E-value=76 Score=29.67 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=36.4
Q ss_pred eeccCCCCcHHHHHHHHHHhCCcEEEEecCC-cchHHHHHHHHHHHHcCCCeeEeeeccccc
Q 009394 214 LGTSRGGHDTSKIVDSIQDRGINQVYVLGGD-GTQKGASAIFEEIRRRGLKVAVAGIPKTID 274 (535)
Q Consensus 214 LGTsR~~~d~~ki~~~l~~~~Id~LvvIGGd-gS~~~A~~L~~~~~~~g~~i~VvgIPkTID 274 (535)
.+--|..+.+.+++++.++.+++.+|.+-|- +.+-+.. +- ....||||+|-...
T Consensus 42 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~~ 96 (174)
T 3lp6_A 42 VSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMV--AA-----ATPLPVIGVPVPLG 96 (174)
T ss_dssp CCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHH--HH-----HCSSCEEEEEECCS
T ss_pred ECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHH--Hh-----ccCCCEEEeeCCCC
Confidence 3344666778899999999999977776554 4444432 22 14578999996543
No 129
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=22.92 E-value=1.4e+02 Score=28.75 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=42.1
Q ss_pred hhcccCcceeccC---CCCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 206 IHKRGGTILGTSR---GGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 206 i~~~GGs~LGTsR---~~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
+...|+.+..... +..++...++.+++.+.+++|+.+.+. .+..+.+.+++.|+++++++.
T Consensus 175 l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~~~~~---~a~~~~~~~~~~g~~vp~~~~ 238 (375)
T 4evq_A 175 FTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSGG---GALKFIKDYAAANLGIPLWGP 238 (375)
T ss_dssp HHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEECCTH---HHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHcCCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEecCcc---hHHHHHHHHHHcCCCceEEec
Confidence 4455666544332 235678888899999999999876553 344556677788999888775
No 130
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=22.74 E-value=63 Score=33.24 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=39.3
Q ss_pred CcHHHHHHHHHHhC--C---cEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeecccc
Q 009394 221 HDTSKIVDSIQDRG--I---NQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTI 273 (535)
Q Consensus 221 ~d~~ki~~~l~~~~--I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 273 (535)
+..+++++.+.+.+ + |.++-+||--.++.|..++-.. .+| +++|.||-|.
T Consensus 87 ~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 141 (393)
T 1sg6_A 87 QTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY-MRG--VRYVQVPTTL 141 (393)
T ss_dssp HHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSH
T ss_pred HHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEECCch
Confidence 34688999999999 9 9999999987777776665322 345 6799999985
No 131
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=22.45 E-value=4.5e+02 Score=24.09 Aligned_cols=104 Identities=11% Similarity=0.045 Sum_probs=60.9
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCCCCcH
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDT 223 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~ 223 (535)
+..+||++...-.-|=...++.++.+.+.. ++ .++.-+. +.......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~ 53 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKA-NK-YEALVAT-------------------------------SQNSRISE 53 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CSSCHHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHH-cC-CEEEEEC-------------------------------CCCCHHHH
Confidence 345899999877777788888888877754 33 2332110 10111223
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCC--CcccCchh
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPII--DKSFGFDT 288 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gt--D~S~GFdT 288 (535)
.+.++.|...++|++++.+.+.... ..+.+.+.+.+ ++||.+ |.+++.. ..++++|-
T Consensus 54 ~~~~~~l~~~~vdgiI~~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 112 (293)
T 3l6u_A 54 REQILEFVHLKVDAIFITTLDDVYI--GSAIEEAKKAG--IPVFAI----DRMIRSDAVVSSITSNN 112 (293)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTTTT--HHHHHHHHHTT--CCEEEE----SSCCCCTTCSEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEecCChHHH--HHHHHHHHHcC--CCEEEe----cCCCCCCcceeEEecCH
Confidence 4677888889999999998876542 12234445555 556655 4444432 23555553
No 132
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=22.17 E-value=4.7e+02 Score=24.16 Aligned_cols=127 Identities=7% Similarity=0.034 Sum_probs=67.2
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CCc
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GHD 222 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d 222 (535)
+..+||++...-.-|-...++.++-+.+.. ++ .++.- ..+.. ...
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~--------------------------------~~~~~~~~~ 64 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQ-RG-YQLLI--------------------------------ACSEDQPDN 64 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------EECTTCHHH
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EcCCCCHHH
Confidence 345899998766666677777777776643 22 22211 01111 112
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCC-cccCchhHHHHHHHHHHHHH
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID-KSFGFDTAVEEAQRAISAAH 301 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD-~S~GFdTAv~~~~~ai~~i~ 301 (535)
..+.++.|...++|++++.+.+.+-. .+.+.+.+.+ ++||.+ |.+.+..+ .++++|-. .....+.+.+.
T Consensus 65 ~~~~~~~l~~~~vdgii~~~~~~~~~---~~~~~~~~~~--iPvV~~----~~~~~~~~~~~V~~d~~-~~~~~a~~~L~ 134 (293)
T 2iks_A 65 EMRCIEHLLQRQVDAIIVSTSLPPEH---PFYQRWANDP--FPIVAL----DRALDREHFTSVVGADQ-DDAEMLAEELR 134 (293)
T ss_dssp HHHHHHHHHHTTCSEEEECCSSCTTC---HHHHTTTTSS--SCEEEE----ESCCCTTTCEEEEECHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCcH---HHHHHHHhCC--CCEEEE----CCccCcCCCCEEEecCH-HHHHHHHHHHH
Confidence 34567888889999999998765431 1223333334 556654 33333211 35665532 12222333333
Q ss_pred hhhhcCcceEEEEEec
Q 009394 302 VEAESFENGIGVVKLM 317 (535)
Q Consensus 302 ~~A~S~~~rv~iVEvM 317 (535)
. .++ ++|.++--.
T Consensus 135 ~--~G~-~~I~~i~~~ 147 (293)
T 2iks_A 135 K--FPA-ETVLYLGAL 147 (293)
T ss_dssp T--SCC-SSEEEEEEC
T ss_pred H--CCC-CEEEEEecC
Confidence 2 244 568777543
No 133
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=22.15 E-value=78 Score=29.60 Aligned_cols=119 Identities=7% Similarity=-0.027 Sum_probs=67.5
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCeE-EEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC-CC
Q 009394 144 DDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHK-VLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG-GH 221 (535)
Q Consensus 144 ~~~~iaIvtsGG~apGmNavIr~vv~~l~~~~~~~~-V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~ 221 (535)
+..+||++...-.-|-...++.++-+.+.. ++ .+ ++-. .+.. .+
T Consensus 9 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~--------------------------------~~~~~~~ 54 (277)
T 3hs3_A 9 KSKMIGIIIPDLNNRFYAQIIDGIQEVIQK-EG-YTALISF--------------------------------STNSDVK 54 (277)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEEEEE--------------------------------CSSCCHH
T ss_pred CCCEEEEEeCCCCChhHHHHHHHHHHHHHH-CC-CCEEEEE--------------------------------eCCCChH
Confidence 345899999877777777888888777754 33 23 2210 1111 12
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccC-ccCCCcccCchhHHHHHHHHHHHH
Q 009394 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDND-IPIIDKSFGFDTAVEEAQRAISAA 300 (535)
Q Consensus 222 d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND-I~gtD~S~GFdTAv~~~~~ai~~i 300 (535)
...+.++.|...++|++++.+ ... +.+.+. .++||. +|++ ++..+.++++|-. .....+.+.+
T Consensus 55 ~~~~~~~~l~~~~vdgiIi~~--~~~-------~~~~~~--~iPvV~----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L 118 (277)
T 3hs3_A 55 KYQNAIINFENNNVDGIITSA--FTI-------PPNFHL--NTPLVM----YDSANINDDIVRIVSNNT-KGGKESIKLL 118 (277)
T ss_dssp HHHHHHHHHHHTTCSEEEEEC--CCC-------CTTCCC--SSCEEE----ESCCCCCSSSEEEEECHH-HHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCCEEEEcc--hHH-------HHHHhC--CCCEEE----EcccccCCCCEEEEEChH-HHHHHHHHHH
Confidence 234678889999999999998 211 222223 456664 4555 5443336666642 2223333333
Q ss_pred HhhhhcCcceEEEEEe
Q 009394 301 HVEAESFENGIGVVKL 316 (535)
Q Consensus 301 ~~~A~S~~~rv~iVEv 316 (535)
. .++ ++|.++--
T Consensus 119 ~---~G~-~~I~~i~~ 130 (277)
T 3hs3_A 119 S---KKI-EKVLIQHW 130 (277)
T ss_dssp C---TTC-CEEEEEES
T ss_pred H---hCC-CEEEEEeC
Confidence 3 454 57877743
No 134
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=21.88 E-value=2.7e+02 Score=26.10 Aligned_cols=85 Identities=13% Similarity=0.040 Sum_probs=50.7
Q ss_pred CeeEEEEccC-----CCCCchhHHHHHHHHHHHHhcCCeEEEEEccccccccCCCeeeCCHhHHhchhcccCcceeccCC
Q 009394 145 DVHACIVTCG-----GLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRG 219 (535)
Q Consensus 145 ~~~iaIvtsG-----G~apGmNavIr~vv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~ 219 (535)
..+||++... -.-|=...++.++-+.+.. ++ .++.-+ .+..
T Consensus 22 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~ 67 (305)
T 3huu_A 22 TLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNV-RG-YSTRMT--------------------------------VSEN 67 (305)
T ss_dssp CCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHH-HT-CEEEEC--------------------------------CCSS
T ss_pred CCEEEEEeCCCccccccCcHHHHHHHHHHHHHHH-CC-CEEEEE--------------------------------eCCC
Confidence 4589999876 4455666677777766653 23 222210 0111
Q ss_pred -CCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 220 -GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 220 -~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
.+...++++.|...++|++++.+.+.+-. ..+.+.+.+ ++||.+
T Consensus 68 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~i 112 (305)
T 3huu_A 68 SGDLYHEVKTMIQSKSVDGFILLYSLKDDP----IEHLLNEFK--VPYLIV 112 (305)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEESSCBTTCH----HHHHHHHTT--CCEEEE
T ss_pred ChHHHHHHHHHHHhCCCCEEEEeCCcCCcH----HHHHHHHcC--CCEEEE
Confidence 11235678889999999999998775432 234444556 456644
No 135
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=21.88 E-value=72 Score=26.67 Aligned_cols=28 Identities=32% Similarity=0.512 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCCeeEeeeccccccCc
Q 009394 250 ASAIFEEIRRRGLKVAVAGIPKTIDNDI 277 (535)
Q Consensus 250 A~~L~~~~~~~g~~i~VvgIPkTIDNDI 277 (535)
...|.+.+++++...-|||+|++.|+..
T Consensus 40 ~~~l~~li~e~~v~~iVvGlP~~mdGt~ 67 (98)
T 1iv0_A 40 VEALLDFVRREGLGKLVVGLPLRTDLKE 67 (98)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCCCCSSS
T ss_pred HHHHHHHHHHcCCCEEEEeeccCCCCCc
Confidence 3455556666677777999999998765
No 136
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=21.78 E-value=3.4e+02 Score=25.33 Aligned_cols=78 Identities=13% Similarity=0.118 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCC---CcccCch--hHHHHHHHHH
Q 009394 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPII---DKSFGFD--TAVEEAQRAI 297 (535)
Q Consensus 223 ~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gt---D~S~GFd--TAv~~~~~ai 297 (535)
..++++.|...++|++++.+.+.+-. +.+.+.+.+ ++||. +|++++.. -.++++| .+...+++.+
T Consensus 57 ~~~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~~--iPvV~----i~~~~~~~~~~~~~V~~D~~~~~~~a~~~L 126 (295)
T 3hcw_A 57 MDEVYKMIKQRMVDAFILLYSKENDP----IKQMLIDES--MPFIV----IGKPTSDIDHQFTHIDNDNILASENLTRHV 126 (295)
T ss_dssp HHHHHHHHHTTCCSEEEESCCCTTCH----HHHHHHHTT--CCEEE----ESCCCSSGGGGSCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcCEEEEcCcccChH----HHHHHHhCC--CCEEE----ECCCCccccCCceEEecCcHHHHHHHHHHH
Confidence 34678889999999999998765432 234445556 45664 45555443 2355554 2344444433
Q ss_pred HHHHhhhhcCcceEEEEEe
Q 009394 298 SAAHVEAESFENGIGVVKL 316 (535)
Q Consensus 298 ~~i~~~A~S~~~rv~iVEv 316 (535)
.. .++ ++|.++--
T Consensus 127 ---~~--~G~-~~I~~i~~ 139 (295)
T 3hcw_A 127 ---IE--QGV-DELIFITE 139 (295)
T ss_dssp ---HH--HCC-SEEEEEEE
T ss_pred ---HH--cCC-ccEEEEcC
Confidence 22 354 57887754
No 137
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=21.68 E-value=1.4e+02 Score=25.12 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeeecc
Q 009394 224 SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPK 271 (535)
Q Consensus 224 ~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPk 271 (535)
+.+.+.+++++++.+++--+..+......+.+.+.+.|++ |.-+|.
T Consensus 55 ~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~--v~~vP~ 100 (141)
T 3nkl_A 55 KYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVE--VLTIPN 100 (141)
T ss_dssp GGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCE--EEECCC
T ss_pred HHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCe--EEECCC
Confidence 3566677889999998877766666667788888877754 667774
No 138
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=21.17 E-value=4.5e+02 Score=27.82 Aligned_cols=149 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhC-CcEEEEec-------CCcchHHHHHHHHHHHHcCCCeeEeeeccccccCccCCCcccCchhHHHHHH
Q 009394 223 TSKIVDSIQDRG-INQVYVLG-------GDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQ 294 (535)
Q Consensus 223 ~~ki~~~l~~~~-Id~LvvIG-------GdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDI~gtD~S~GFdTAv~~~~ 294 (535)
.+.|.+.+++++ -+.++|++ ||+--.-+..+.++. .++||.+.. +...+..++-||+.|++.+.
T Consensus 132 ~~~I~~~~~~~~~P~~I~V~tTC~~e~IGdDl~~v~~~~~~~~-----~~pVi~v~t---pgf~g~s~~~G~~~a~~al~ 203 (492)
T 3u7q_A 132 AKLIDEVETLFPLNKGISVQSECPIGLIGDDIESVSKVKGAEL-----SKTIVPVRC---EGFRGVSQSLGHHIANDAVR 203 (492)
T ss_dssp HHHHHHHHHHCTTCCCEEEEECTHHHHTTCCHHHHHHHHHHHH-----TCCEEEECC---CTTSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEECCcHHHHHhcCHHHHHHHHHHhh-----CCcEEEecC---CCCCCCchhHHHHHHHHHHH
Q ss_pred H-HHHHHHhhhhcCcceEEEEEecCCCccHHHHHHhHhcCCccEEecCCCCCCCCCcchHHHHHHHHHHhCCcEEE-EEe
Q 009394 295 R-AISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVI-VIA 372 (535)
Q Consensus 295 ~-ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~l~~~~~l~e~I~~rl~~~~~~vI-VVa 372 (535)
+ .++....+...... ...+-+|++ |... +.+..|++-+++-|..++ +..
T Consensus 204 ~~l~~~~~~~~~~~~~------------------------~~~VNIiG~--~~~~---gD~~eik~lL~~~Gi~v~~~~~ 254 (492)
T 3u7q_A 204 DWVLGKRDEDTTFAST------------------------PYDVAIIGD--YNIG---GDAWSSRILLEEMGLRCVAQWS 254 (492)
T ss_dssp HHTTTTTTTCCCCCCC------------------------TTEEEEEEE--CCBT---TTTHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhhcccccccCCC------------------------CCcEEEECC--CCCh---hhHHHHHHHHHHCCCeEEEEeC
Q ss_pred cCCCchhhHHHhhhcccccccCCccchh-hHHHHHHHHHHHhC
Q 009394 373 EGAGQELLSEIMHTMDQQDASGNKLLQD-VGLWISQKIRDHFG 414 (535)
Q Consensus 373 EGa~~~~~~~~~~~~~~~Da~Gn~~l~~-ig~~L~~~I~~~~~ 414 (535)
.|..-+.+... .++.-|..+.. .+..+++.++++++
T Consensus 255 g~~t~~ei~~~------~~A~~niv~~~~~~~~~A~~Le~~~G 291 (492)
T 3u7q_A 255 GDGSISEIELT------PKVKLNLVHCYRSMNYISRHMEEKYG 291 (492)
T ss_dssp TTCCHHHHHHG------GGCSEEEESCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHhh------hcCcEEEEEChHHHHHHHHHHHHHhC
No 139
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=20.02 E-value=2e+02 Score=27.77 Aligned_cols=61 Identities=13% Similarity=0.253 Sum_probs=41.1
Q ss_pred hhcccCcceeccC---CCCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCCeeEeee
Q 009394 206 IHKRGGTILGTSR---GGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269 (535)
Q Consensus 206 i~~~GGs~LGTsR---~~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 269 (535)
+...|+.+..... +..++...+..+++.+.+++|+.+.+. .+..+.+.+++.|+++++++.
T Consensus 165 ~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~---~a~~~~~~~~~~g~~~~~i~~ 228 (364)
T 3lop_A 165 LKAHALAITAMASYPRNTANVGPAVDKLLAADVQAIFLGATAE---PAAQFVRQYRARGGEAQLLGL 228 (364)
T ss_dssp HHTTTCCCSEEEEECTTSCCCHHHHHHHHHSCCSEEEEESCHH---HHHHHHHHHHHTTCCCEEEEC
T ss_pred HHHcCCcEEEEEEecCCCccHHHHHHHHHhCCCCEEEEecCcH---HHHHHHHHHHHcCCCCeEEEe
Confidence 4455666554322 245778888999999999988876432 344566777888988776653
No 140
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=20.01 E-value=1.3e+02 Score=28.87 Aligned_cols=62 Identities=19% Similarity=0.407 Sum_probs=41.5
Q ss_pred chhcccCcceeccC---CCCcHHHHHHHHHHhCCcEEEEecCCcchHHHHHHHHHHHHcCCC---eeEeee
Q 009394 205 GIHKRGGTILGTSR---GGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLK---VAVAGI 269 (535)
Q Consensus 205 ~i~~~GGs~LGTsR---~~~d~~ki~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~---i~VvgI 269 (535)
.+...|+.+..... +..++...++.+++.+.+++|+.+.+.. +..+.+.+++.|+. +++++.
T Consensus 162 ~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~---a~~~~~~~~~~g~~~~~v~~~~~ 229 (368)
T 4eyg_A 162 RFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFVFVPAGQ---GGNFMKQFAERGLDKSGIKVIGP 229 (368)
T ss_dssp HHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHCCSEEEEECCTTC---HHHHHHHHHHTTGGGTTCEEEEE
T ss_pred HHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEeccchH---HHHHHHHHHHcCCCcCCceEEec
Confidence 34456666655433 2357788899999999999999776653 33455666777876 566654
Done!