RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 009394
(535 letters)
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase.
Length = 484
Score = 1016 bits (2628), Expect = 0.0
Identities = 393/477 (82%), Positives = 439/477 (92%)
Query: 59 ENSERKIITGEAGYVLEDVPHFSDYISDLPTHPNPLQDNPSYSVVKQHFVDVDDSVAQNI 118
+S+ KI+TG+AGYVLEDVPH +DY+ DLPT+PNPLQDNP+YSVVKQ+FV+ DD+VAQ I
Sbjct: 1 GSSKPKIVTGDAGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKI 60
Query: 119 VVHQDSPRGRHFRRVGPREKVYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVH 178
VVH+DSPRG HFRR GPR+KVYFESD+V ACIVTCGGLCPGLNTVIREIVCGL YMYGV
Sbjct: 61 VVHKDSPRGTHFRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVT 120
Query: 179 KVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQV 238
++LGI+GGYRGFY+RNTIPLTPK+VN IHKRGGTILGTSRGGHDTSKIVDSIQDRGINQV
Sbjct: 121 RILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQV 180
Query: 239 YVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAIS 298
Y++GGDGTQKGAS I+EEIRRRGLKVAVAGIPKTIDNDIP+IDKSFGFDTAVEEAQRAI+
Sbjct: 181 YIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 240
Query: 299 AAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIE 358
AAHVEAES ENGIG+VKLMGRYSGFIAMYAT+ASRDVDCCLIPESPFYLEG GGLFE+IE
Sbjct: 241 AAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIE 300
Query: 359 KRLKENGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRK 418
KRLKENGHMVIV+AEGAGQ+L++E M + D QDASGNKLL DVGLW+SQKI+DHF K +K
Sbjct: 301 KRLKENGHMVIVVAEGAGQDLIAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKK 360
Query: 419 MTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPFY 478
M INLKYIDPTYMIRA+PSNASDNVYCTLLAHSA+HGAMAGYTGFTVGPVNGRHAYIPFY
Sbjct: 361 MPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTGFTVGPVNGRHAYIPFY 420
Query: 479 RITERQNRVVITDRMWARLLSSTNQPSFLDPKKVKQSKEEGKLDTQLFNHAPKILNN 535
RITE+QN+VVITDRMWARLLSSTNQPSFL PK V ++K E + +L + ++
Sbjct: 421 RITEKQNKVVITDRMWARLLSSTNQPSFLSPKDVLEAKREDEEAEKLDDGPLSSIDV 477
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 443
Score = 556 bits (1435), Expect = 0.0
Identities = 220/428 (51%), Positives = 283/428 (66%), Gaps = 15/428 (3%)
Query: 88 PTHPNPLQDNPSYSVVKQHFVDVDDSVAQNIVVHQDSPRG------RHFRRVGPREKVYF 141
P+PL + + HFV D V ++ + F + GPREK+YF
Sbjct: 18 CKIPSPLIYSL-AAGDTTHFVSDSDRVLFDVSLSLIKEEDAPGTEPPSFEKAGPREKIYF 76
Query: 142 ESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGF---YARNTIPL 198
+ V A IVTCGGLCPGLN VIR IV L++ YGV ++LGI GY+G Y + + L
Sbjct: 77 DPSKVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVEL 136
Query: 199 TPKIVNGIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIR 258
TP++V IH+ GGTILG+SRG D +IVD+++ IN ++V+GGDGT +GASAI EEI
Sbjct: 137 TPEVVADIHEFGGTILGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIE 196
Query: 259 RRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMG 318
RRGLK++V GIPKTIDNDI I KSFGF+TAVE+A AI AHVEA NGIG+VKLMG
Sbjct: 197 RRGLKISVIGIPKTIDNDINFIQKSFGFETAVEKATEAIRCAHVEANGAPNGIGLVKLMG 256
Query: 319 RYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQE 378
R+SGFIA YA +AS+DV+ LIPE PF LEGP GL +EKRL E GH VIV+AEGAGQE
Sbjct: 257 RHSGFIAAYAALASKDVNFVLIPEVPFDLEGPNGLLAALEKRLAERGHAVIVVAEGAGQE 316
Query: 379 LLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSN 438
L + T DASGN L D+GL++ +I+++F K R + INLKYIDP+Y+IR+VP+N
Sbjct: 317 LFDDTGET----DASGNPKLGDIGLFLKDRIKEYF-KARGIPINLKYIDPSYIIRSVPAN 371
Query: 439 ASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPFYRITERQNRVVITDRMWARLL 498
A+D+VYC L +A+H AMAG TG VG N R ++P ++ +V +W +L
Sbjct: 372 ANDSVYCGFLGQNAVHAAMAGKTGMVVGRWNNRFVHLPIDLAVSKRKKVNPEGDLWRSVL 431
Query: 499 SSTNQPSF 506
ST QP
Sbjct: 432 ESTGQPRS 439
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional.
Length = 459
Score = 535 bits (1379), Expect = 0.0
Identities = 214/419 (51%), Positives = 283/419 (67%), Gaps = 13/419 (3%)
Query: 107 FVDVDDSVAQNIVVHQD--SPRGRHFRRVGPREKVYFESDDVHACIVTCGGLCPGLNTVI 164
FVD + + D + + R GPR+ +YF +V A IVTCGGLCPGLN VI
Sbjct: 47 FVDTNSYILSTPRFGPDDVIVNTKRWLRAGPRKHLYFNPKEVKAGIVTCGGLCPGLNVVI 106
Query: 165 REIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTS 224
RE+V L YGV + G + GY+G Y + I L PK V IH+ GGTILG+SRGG D
Sbjct: 107 RELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSRGGFDPK 166
Query: 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSF 284
+VD++ GIN ++ LGGDGT +GA AI++E+RRR L ++V GIPKTIDNDIPIID+SF
Sbjct: 167 VMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESF 226
Query: 285 GFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESP 344
GF TAVEEAQ AI AA+VEA+S +NG+G+VKLMGR SGFIA++A++AS DV+ CLIPE
Sbjct: 227 GFQTAVEEAQNAIRAAYVEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIPEFD 286
Query: 345 FYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLW 404
LE G+ EYIE+RL++ GH VIV+AEGAGQ L + DASGNK L D+G++
Sbjct: 287 IPLE---GVLEYIEQRLQKKGHCVIVVAEGAGQSLKDADLDLG--TDASGNKKLWDIGVY 341
Query: 405 ISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAGYTGFT 464
+ +I + KK+K +KYIDP+YMIRAVP+NA+D +CT LA +A+HGAMAG+TGF
Sbjct: 342 LKDEITK-YLKKKKPEHTVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGFI 400
Query: 465 VGPVNGRHAYIPFYRITER-QNRVVITDRMWARLLSSTNQPSFL----DPKKVKQSKEE 518
+G V+ + IP ++ + RV R+W R+L+ T QPSFL + ++ E
Sbjct: 401 IGHVHNNYVMIPIKEMSGNYRRRVNPEGRLWQRMLAITGQPSFLNNEEIERHQRRQLES 459
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase.
Length = 411
Score = 468 bits (1206), Expect = e-163
Identities = 207/377 (54%), Positives = 273/377 (72%), Gaps = 8/377 (2%)
Query: 132 RVGPREKVYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFY 191
R GPR+K+YFE ++V A IVTCGGLCPGLN VIR+IV L +YGV ++GI GYRGF+
Sbjct: 40 RAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLE-IYGVKNIVGIPFGYRGFF 98
Query: 192 ARN--TIPLTPKIVNGIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKG 249
+ +PL+ K+V IH GG++LG SRGG TS IVDSI+ RGIN ++VLGG+GT G
Sbjct: 99 EKGLSEMPLSRKVVQNIHLSGGSLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAG 158
Query: 250 ASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFEN 309
A+AI E R+R +KV+V G+PKTIDNDI ++DK+FGFDTAVEEAQRAI++A++EA S +
Sbjct: 159 ANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYH 218
Query: 310 GIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVI 369
GIG+VKLMGR SGFIAM+A++AS VD CLIPE PF L+GP G+ ++E ++ G V+
Sbjct: 219 GIGLVKLMGRSSGFIAMHASLASGQVDICLIPEVPFTLDGPNGVLRHLEHLIETKGSAVV 278
Query: 370 VIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPT 429
+AEGAGQ+LL + T DASGN +L D+G+ + Q+I+ HF K + ++KYIDPT
Sbjct: 279 CVAEGAGQDLLQKTNAT----DASGNPVLGDIGVHLQQEIKKHF-KDIGVPADVKYIDPT 333
Query: 430 YMIRAVPSNASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPFYRITERQNRVVI 489
YMIRA +NASD + CT+L +A+HGA AG++G TVG N + Y+P + RV
Sbjct: 334 YMIRACRANASDAILCTVLGQNAVHGAFAGFSGITVGICNTHYVYLPIPEVIAYPRRVDP 393
Query: 490 TDRMWARLLSSTNQPSF 506
RMW R L+ST QP F
Sbjct: 394 NSRMWHRCLTSTGQPDF 410
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and
metabolism].
Length = 347
Score = 226 bits (579), Expect = 1e-69
Identities = 105/334 (31%), Positives = 161/334 (48%), Gaps = 37/334 (11%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKR 209
I+T GG PG+N VIR +V + +V GI GY G + PLT + V+ + R
Sbjct: 7 ILTSGGDAPGMNAVIRAVV--RTAIKEGLEVFGIYNGYLGLLEGDIKPLTREDVDDLINR 64
Query: 210 GGTILGTSRGGHDTS-----KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKV 264
GGT LG++R + ++++ GI+ + V+GGDG+ GA+ + EE +
Sbjct: 65 GGTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GI 119
Query: 265 AVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFI 324
V G+PKTIDNDI D + GFDTA+E A AI A S I +V++MGR++G++
Sbjct: 120 PVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDNLRDTASS-HERIFIVEVMGRHAGWL 178
Query: 325 AMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKR-LKENGHMVIVIAEGAGQELLSEI 383
A+ A +A+ D LIPE P L + E KR + H +IV+AEGA
Sbjct: 179 ALAAGLAT-GADIILIPEEPADLIIEELIAEIKAKREARGKKHAIIVVAEGA-------- 229
Query: 384 MHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNV 443
+DQ +G +LL + + ++ R +A D V
Sbjct: 230 ---IDQIGENGAELLAAIEE-----------LLALGDFETRVTVLGHIQRGGTPSAFDRV 275
Query: 444 YCTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPF 477
+ L +A+ + G TG+ VG N + ++P
Sbjct: 276 LASRLGAAAVDLLLEGKTGYMVGIRNNKIVHVPI 309
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase. Members of this family
that are characterized, save one, are
phosphofructokinases dependent on pyrophosphate (EC
2.7.1.90) rather than ATP (EC 2.7.1.11). The exception
is one of three phosphofructokinases from Streptomyces
coelicolor. Family members are both bacterial and
archaeal [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 324
Score = 185 bits (473), Expect = 2e-54
Identities = 117/344 (34%), Positives = 179/344 (52%), Gaps = 35/344 (10%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPL-TPKIVNGIHK 208
++T GG CPGLN VIR +V YG +V+GI G+RG +T+PL + V GI
Sbjct: 4 VLTGGGDCPGLNAVIRGVVRRAIAEYG-WEVIGIRDGWRGLLEGDTVPLLDLEDVRGILP 62
Query: 209 RGGTILGTSRGG------HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGL 262
RGGTILG+SR KIV ++++ G++ + +GGDGT A + +GL
Sbjct: 63 RGGTILGSSRTNPFKYEEDGDDKIVANLKELGLDALIAIGGDGTLGIAR----RLADKGL 118
Query: 263 KVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSG 322
V G+PKTIDND+ D +FGFDTAVE A A+ H AES + + VV++MGR++G
Sbjct: 119 PVV--GVPKTIDNDLEATDYTFGFDTAVEIATEALDRLHTTAES-HHRVMVVEVMGRHAG 175
Query: 323 FIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENG-HMVIVIAEGA----GQ 377
+IA+++ IA D LIPE PF ++ + E + +R ++V+AEGA G+
Sbjct: 176 WIALHSGIAG-GADVILIPEIPFDID---SVCEKVRERFARGKRFAIVVVAEGAKPKGGE 231
Query: 378 ELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPS 437
++ E + +DA G+ L +G W++++I G + + T+ ++ R
Sbjct: 232 MVVQEGV-----KDAFGHVRLGGIGNWLAEEIERRTGIETRATV------LGHLQRGGSP 280
Query: 438 NASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPFYRIT 481
+A D V T +A+ G G V Y+P
Sbjct: 281 SAFDRVLATRFGVAAVDLVHEGQFGHMVALRGTDIVYVPIAEAV 324
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional.
Length = 320
Score = 178 bits (455), Expect = 9e-52
Identities = 107/354 (30%), Positives = 167/354 (47%), Gaps = 61/354 (17%)
Query: 150 IVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHK 208
++T GG PG+N IR +V + G +V GI GY G + + L K V+ I
Sbjct: 6 VLTSGGDAPGMNAAIRAVVRTAISE--G-LEVYGIYDGYAGLLEGDIVKLDLKSVSDIIN 62
Query: 209 RGGTILGTSRGGHDT-----SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLK 263
RGGTILG++R +K +++++ GI+ + V+GGDG+ GA + E
Sbjct: 63 RGGTILGSARFPEFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------G 116
Query: 264 VAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGF 323
+ V G+P TIDNDI D + GFDTA+ A AI A S E + +V++MGR++G
Sbjct: 117 IPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRLRDTASSHER-VFIVEVMGRHAGD 175
Query: 324 IAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENG--HMVIVIAEGAGQELLS 381
+A++A IA + LIPE PF +E L I+K +E G H +IV+AEG
Sbjct: 176 LALHAGIAG-GAEVILIPEVPFDIEE---LCAKIKKG-RERGKKHAIIVVAEGV------ 224
Query: 382 EIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYID----PTYMIRAVPS 437
M ++ ++++I + G + ++T+ L +I PT
Sbjct: 225 -----MPAEE-------------LAKEIEERTGLETRVTV-LGHIQRGGSPT-------- 257
Query: 438 NASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPFYRITERQNRVVITD 491
A D V + + A+ + G G VG N + ++P E D
Sbjct: 258 -AFDRVLASRMGAHAVELLLEGKGGRMVGIQNNKIVHVPIEEAVENMKHPFDKD 310
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to PFK family that includes ATP- and
pyrophosphate (PPi)- dependent phosphofructokinases.
Some members evolved by gene duplication and thus have a
large C-terminal/N-terminal extension comprising a
second PFK domain. Generally, ATP-PFKs are allosteric
homotetramers, and PPi-PFKs are dimeric and
nonallosteric except for plant PPi-PFKs which are
allosteric heterotetramers.
Length = 338
Score = 157 bits (400), Expect = 1e-43
Identities = 98/328 (29%), Positives = 149/328 (45%), Gaps = 35/328 (10%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKR 209
++T GG PG+N IR +V G+ +V GI GY G + L + V+ I R
Sbjct: 5 VLTSGGDAPGMNAAIRGVVRSAIA-EGL-EVYGIYEGYAGLVEGDIKELDWESVSDIINR 62
Query: 210 GGTILGTSRGGHDTS-----KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKV 264
GGTI+G++R + K ++++ GI+ + V+GGDG+ GA + EE +
Sbjct: 63 GGTIIGSARCKEFRTEEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGF 122
Query: 265 AVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFI 324
V G+P TIDNDI D + GFDTA++ AI A S VV++MGR+ G I
Sbjct: 123 NVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRIRDTASS-HQRTFVVEVMGRHCGDI 181
Query: 325 AMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENG--HMVIVIAEGAGQELLSE 382
A+ A +A+ D IPE P E + + I+KR +E G H ++++AEGA +
Sbjct: 182 ALEAGLAT-GADIIFIPEEPAADEWEEEMVDVIKKR-RERGKRHGIVIVAEGAIDFIPKP 239
Query: 383 IMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDN 442
I + L + V + R L ++ R A D
Sbjct: 240 I---------TEKLLAKLVEERLGFDTRATV---------LGHVQ-----RGGTPTAFDR 276
Query: 443 VYCTLLAHSAIHGAMAGYTGFTVGPVNG 470
+ + L A+ + G G VG N
Sbjct: 277 ILASRLGAEAVELLLEGTGGTPVGIQNL 304
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase
(EC 2.7.1.11) catalyzes the addition of phosphate from
ATP to fructose 6-phosphate to give fructose
1,6-bisphosphate. This represents a key control step in
glycolysis. This model hits bacterial ATP-dependent
6-phosphofructokinases which lack a beta-hairpin loop
present in TIGR02483 family members. TIGR02483 contains
members that are ATP-dependent as well as members that
are pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90) [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 301
Score = 135 bits (342), Expect = 6e-36
Identities = 84/232 (36%), Positives = 131/232 (56%), Gaps = 20/232 (8%)
Query: 150 IVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHK 208
I+T GG PG+N IR +V +Y+ + +V GI GY+G PL K V+GI
Sbjct: 4 ILTSGGDAPGMNAAIRAVVRTAIYHGF---EVYGIRRGYKGLINGKIEPLESKNVSGIIH 60
Query: 209 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLK 263
RGGTILGT+R + K V++++ GI + V+GGDG+ GA ++EE
Sbjct: 61 RGGTILGTARCPEFKTEEVREKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEE-----GG 115
Query: 264 VAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGF 323
+ V G+P TIDNDIP D + GFDTA+ A+ A S E V+++MGR++G
Sbjct: 116 IPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIRDTATSHERAF-VIEVMGRHAGD 174
Query: 324 IAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENG-HMVIVIAEG 374
+A+YA IA+ + +IPE + ++ L + ++++ + H +I++AEG
Sbjct: 175 LALYAGIAT-GAEIIIIPEFDYDID---ELIQRLKEQHEAGKKHSIIIVAEG 222
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional.
Length = 360
Score = 132 bits (334), Expect = 3e-34
Identities = 94/288 (32%), Positives = 148/288 (51%), Gaps = 31/288 (10%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYAR--NTIPLTPKIVNGIH 207
I+T GG C GLN VIR +V YG +V+GI +G AR I L V+ +
Sbjct: 9 ILTSGGDCAGLNAVIRAVVHRARGTYG-WEVIGIRDATQGLMARPPQYIELDLDQVDDLL 67
Query: 208 KRGGTILGTSRGGH-------DTSK------IVDSIQDRGINQVYVLGGDGTQKGASAIF 254
+ GGTILGT+ G D S I+D G++ + +GGDG+ AI
Sbjct: 68 RMGGTILGTTNKGDPFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSL----AIL 123
Query: 255 EEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVV 314
+ ++G + + GIPKTIDND+ + S GFDTAV A A+ H A S N + ++
Sbjct: 124 RRLAQQG-GINLVGIPKTIDNDVGATEVSIGFDTAVNIATEALDRLHFTAAS-HNRVMIL 181
Query: 315 KLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE-NGHMVIVIAE 373
++MGR +G IA+ A IA D LIPE P+ LE + + I +R +E ++V++E
Sbjct: 182 EVMGRDAGHIALAAGIAG-GADVILIPEIPYTLE---NVCKKIRERQEEGKNFCLVVVSE 237
Query: 374 GAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTI 421
+ +E + + A G +G +++++I + G + ++T+
Sbjct: 238 A----VRTEEGEQVTKTQALGEDRYGGIGQYLAEQIAERTGAETRVTV 281
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase.
Length = 279
Score = 128 bits (325), Expect = 9e-34
Identities = 84/247 (34%), Positives = 123/247 (49%), Gaps = 28/247 (11%)
Query: 150 IVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHK 208
++T GG PG+N IR +V + G+ +V GI GY G A N L + V+ I +
Sbjct: 5 VLTSGGDAPGMNAAIRAVVRSAIAE--GL-EVYGIYEGYAGLVAGNIKQLDWESVSDIIQ 61
Query: 209 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLK 263
RGGT +G++R K ++++ GI+ + V+GGDG+ GA + E G
Sbjct: 62 RGGTFIGSARCPEFREREGRLKAAENLKKHGIDALVVIGGDGSYTGADLLTSE---HGFN 118
Query: 264 VAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGF 323
G+P TIDNDI D + GFDTA+ AI A S VV++MGR+ G
Sbjct: 119 CV--GLPGTIDNDICGTDYTIGFDTALNTIVEAIDRIRDTASS-HQRTFVVEVMGRHCGD 175
Query: 324 IAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN-----GHMVIVIAEGAGQE 378
+A+ A IA D IPE+PF+ E + RLK H ++++AEGA
Sbjct: 176 LALVAGIAG-GADYIFIPEAPFW-------EEELCNRLKRGRERGKRHNIVIVAEGAIDP 227
Query: 379 LLSEIMH 385
+ SE +
Sbjct: 228 ITSEFVK 234
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include bacterial ATP-dependent
phosphofructokinases. These are allosrterically
regulated homotetramers; the subunits are of about 320
amino acids.
Length = 317
Score = 128 bits (324), Expect = 3e-33
Identities = 99/331 (29%), Positives = 149/331 (45%), Gaps = 55/331 (16%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKR 209
++T GG PG+N IR +V G+ +V GI GY G A + +PL V+ I R
Sbjct: 5 VLTSGGDAPGMNAAIRGVVRSAIAE-GL-EVYGIRDGYAGLIAGDIVPLDRYSVSDIINR 62
Query: 210 GGTILGTSR-----GGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKV 264
GGT LG++R +K ++ ++ GI+ + V+GGDG+ GA + E
Sbjct: 63 GGTFLGSARFPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH------GF 116
Query: 265 AVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFI 324
G+P TIDNDIP D + GFDTA+ AI + S I VV++MGR+ G I
Sbjct: 117 PCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRIRDTSSS-HQRISVVEVMGRHCGDI 175
Query: 325 AMYATIASRDVDCCLIPESPFYLEGPGGLFEYIE--KRLKENG--HMVIVIAEGAGQELL 380
A+ A IA + +IPE+ F E E K E G H ++V+AEG
Sbjct: 176 ALAAGIAG-GAEFIVIPEAEFDRE------EVANRIKAGIERGKKHAIVVVAEGVY---- 224
Query: 381 SEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNAS 440
++L ++I + G + + T+ L +I R A
Sbjct: 225 ------------DVDELA--------KEIEEATGFETRATV-LGHIQ-----RGGSPTAF 258
Query: 441 DNVYCTLLAHSAIHGAMAGYTGFTVGPVNGR 471
D + + + A+ +AG G VG N +
Sbjct: 259 DRILASRMGAYAVELLLAGKGGLAVGIQNEQ 289
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type.
Members of this family are eukaryotic (with one
exception) ATP-dependent 6-phosphofructokinases (EC
2.7.1.11) in which two tandem copies of the
phosphofructokinase are found. Members are found, often
including several isozymes, in animals and fungi and in
the bacterium Propionibacterium acnes KPA171202 (a human
skin commensal).
Length = 746
Score = 98.2 bits (245), Expect = 2e-21
Identities = 65/265 (24%), Positives = 114/265 (43%), Gaps = 9/265 (3%)
Query: 135 PREKVYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARN 194
++ V E+ + I+ G G+N R V Y + H V+ I G+ G +
Sbjct: 379 DKKLVPSEASRLRIAIIHVGAPAGGMNAATRSAV--RYALARGHTVIAIHNGFSGLARHD 436
Query: 195 TIPLTPKIVNGIHKRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASA 252
LT V G GG+ LGT+R G D I Q I+ + ++GG +
Sbjct: 437 VRELTWSDVEGWVGEGGSELGTNRSLPGDDLGTIAYYFQQHKIDGLIIIGGFEAFEALY- 495
Query: 253 IFEEIRRR--GLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENG 310
+ R + ++ + IP TI N++P + S G DTA+ E A + +
Sbjct: 496 QLDAAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNEITEYCDNIKQSASASKRR 555
Query: 311 IGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVIV 370
+ VV+ MG YSG++A A +A+ D IPE L+ E++++ E ++
Sbjct: 556 VFVVETMGGYSGYLATMAGLAT-GADAAYIPEEGISLKDLQEDIEHLKETFAEGRAGKLI 614
Query: 371 I-AEGAGQELLSEIMHTMDQQDASG 394
+ E A + ++ + + ++ G
Sbjct: 615 LRNEKASKVYTTDFIARIISEEGKG 639
Score = 90.5 bits (225), Expect = 5e-19
Identities = 73/259 (28%), Positives = 114/259 (44%), Gaps = 45/259 (17%)
Query: 150 IVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVLGIEGGYRGFY--ARNTIPLTPKIVNGI 206
++T GG G+N +R +V +Y +V I GY+G N + V GI
Sbjct: 5 VLTSGGDAQGMNAAVRAVVRMAIYVG---CRVYAIREGYQGLVDGGDNIEEAQWEDVRGI 61
Query: 207 HKRGGTILGTSR--------GGHDTSKIVDSIQDRGINQVYVLGGDGTQKGAS------- 251
GGTI+GT+R G K ++ GI+ + V+GGDG+ GA
Sbjct: 62 LSLGGTIIGTARCKEFRERPG---RLKAARNLVSNGIDALVVIGGDGSLTGADLFREEWP 118
Query: 252 ----------AIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAH 301
I E + + G+ +IDND+ D + G D+A+ AI A
Sbjct: 119 SLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSALHRICEAIDAIS 178
Query: 302 VEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRL 361
A+S + VV++MGR+ G++A+ A IA+ D IPE P + + +L
Sbjct: 179 STAQSHQRAF-VVEVMGRHCGYLALMAAIAT-GADYVFIPERPPEEGWE----DQLCHKL 232
Query: 362 KENGHM-----VIVIAEGA 375
K N ++++AEGA
Sbjct: 233 KRNRKAGKRKTIVIVAEGA 251
>gnl|CDD|237600 PRK14072, PRK14072, 6-phosphofructokinase; Provisional.
Length = 416
Score = 93.0 bits (232), Expect = 2e-20
Identities = 61/254 (24%), Positives = 113/254 (44%), Gaps = 25/254 (9%)
Query: 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSF 284
++++ + I + GG+ + A + + ++ G + GIPKTIDND+P D
Sbjct: 94 RLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCP 153
Query: 285 GFDTAVEEAQRAISAAHVEAESFENG--IGVVKLMGRYSGFIAMYATIASRDVDCC---- 338
GF +A + ++ A ++ + N + ++++MGR++G++A A +A ++ D
Sbjct: 154 GFGSAAKYIATSVLEAALDVAAMANTSKVFILEVMGRHAGWLAAAAALAKQNPDDAPHLI 213
Query: 339 LIPESPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLL 398
+PE PF E + +K G+ V+V++EG I +DA G+ L
Sbjct: 214 YLPERPFDEE---KFLADVRAIVKRYGYCVVVVSEGIRDADGKFIAEAGLAEDAFGHAQL 270
Query: 399 QDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCT------LLAHSA 452
V ++ I++ GKK + Y+ RA AS T + +A
Sbjct: 271 GGVAPVLANLIKEKLGKKVHWAV------LDYLQRAARHIASK----TDVEEAYAVGKAA 320
Query: 453 IHGAMAGYTGFTVG 466
+ A+AG G
Sbjct: 321 VEYALAGKNGVMPA 334
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Validated.
Length = 403
Score = 88.9 bits (221), Expect = 4e-19
Identities = 103/413 (24%), Positives = 174/413 (42%), Gaps = 77/413 (18%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGV----HKVLGIEGGYRGFYARNTIPLTPKI--- 202
++T GGL P L++ V GL Y +++ GY+G ++I +TP +
Sbjct: 8 LLTAGGLAPCLSS----AVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRAN 63
Query: 203 VNGIHKRGGTILGTSR----------------GGHDTSKI-VDSIQDRGINQVYVLGGDG 245
+H+ GG+ +G SR G + K+ + + G++ ++ +GGD
Sbjct: 64 AGLLHRYGGSPIGNSRVKLTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDD 123
Query: 246 TQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAE 305
T A+ + + G + V G+PKTIDND+ I +S G TA E+ A +V E
Sbjct: 124 TNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAEQG--ARFFDNVINE 181
Query: 306 SFENG--IGVVKLMGRYSGFIAMYATIASR-------------------DVDCCLIPESP 344
N + + ++MGR G++ A R D+ +PE
Sbjct: 182 HSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPEMA 241
Query: 345 FYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIMHTMD------QQDASGNKLL 398
F LE E ++ + E G++ I ++EGAG L I+ M+ ++DA G+ L
Sbjct: 242 FDLEAEA---ERLKAVMDEVGNVNIFLSEGAG---LDAIVAEMEAAGEEVKRDAFGHVKL 295
Query: 399 Q--DVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGA 456
+ G W +++ + G ++ M Y R+ P+NA D + A+ A
Sbjct: 296 DTINPGAWFAKQFAELLGAEKVMVQK-----SGYFARSAPANAEDLRLIKSMVDLAVECA 350
Query: 457 MAGYTGFTVG---PVNGRHAYIPFYRITERQNRVVITDRMW-ARLLSSTNQPS 505
+ G +G +G G+ I F RI + + T W LL QP
Sbjct: 351 LRGVSG-VIGHDEEQGGKLRAIEFPRI--KGGKAFDTSTPWFTELLDEIGQPY 400
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include eukaryotic ATP-dependent
phosphofructokinases. These have evolved from the
bacterial PFKs by gene duplication and fusion events and
exhibit complex allosteric behavior.
Length = 762
Score = 86.8 bits (215), Expect = 8e-18
Identities = 65/279 (23%), Positives = 110/279 (39%), Gaps = 24/279 (8%)
Query: 142 ESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPK 201
E +++ IV G G+N +R V Y + H+ I G+ G + L
Sbjct: 386 EKTNLNIAIVNVGAPAAGMNAAVRSAV--RYGLAHGHRPYAIYDGFEGLAKGQIVELGWI 443
Query: 202 IVNGIHKRGGTILGTSR--GGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR 259
V G RGG+ LGT R D I + Q GI+ + ++GG KG + E R
Sbjct: 444 DVGGWTGRGGSELGTKRTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQL-REARE 502
Query: 260 R--GLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLM 317
+ + + IP T+ N++P D S G DTA+ + A + + +V+ M
Sbjct: 503 QYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNALMKYCDRIKQSASGTKRRVFIVETM 562
Query: 318 GRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQ 377
G Y G++A +A D + E PF + E++ +++K G G
Sbjct: 563 GGYCGYLATMTGLAV-GADAAYVFEEPFNIRDLQENVEHLTEKMKT--------TIGRGL 613
Query: 378 ELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKK 416
L +E + + S++ + F +
Sbjct: 614 VLRNEKCNENYTTVFTYELY--------SEEGKGVFDCR 644
Score = 84.5 bits (209), Expect = 4e-17
Identities = 68/256 (26%), Positives = 118/256 (46%), Gaps = 39/256 (15%)
Query: 150 IVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVLGIEGGYRGFY--ARNTIPLTPKIVNGI 206
++T GG G+N +R +V G+Y G KV + GY G + V+
Sbjct: 8 VLTSGGDAQGMNAAVRAVVRMGIYV--GA-KVFFVYEGYEGLVKGGDYIKQAEWESVSNW 64
Query: 207 HKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYVLGGDGTQKGA-------SAIF 254
+ GGTI+G++R + ++ RGI + V+GGDG+ GA ++
Sbjct: 65 LQEGGTIIGSARCKEFREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLL 124
Query: 255 EEIRRRG----------LKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEA 304
EE+ + G + + G+ +IDND D + G D+A+ + A A
Sbjct: 125 EELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTIGTDSALHRICEVVDAITTTA 184
Query: 305 ESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN 364
+S + V+++MGR+ G++A+ + +A+ D IPE P G + + +RL E+
Sbjct: 185 QSHQRTF-VLEVMGRHCGYLALVSGLAT-GADWIFIPERP----PEDGWEDQMCRRLSEH 238
Query: 365 GHM-----VIVIAEGA 375
+I++AEGA
Sbjct: 239 RSRGKRLNIIIVAEGA 254
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
Length = 1419
Score = 85.9 bits (212), Expect = 2e-17
Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 17/196 (8%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVH-----KVLGIEGGYRGFYARNTIPLTPKIVN 204
I+ GG PG + VI I Y Y +V+G GG G Y++N + +T ++N
Sbjct: 182 IILSGGPAPGGHNVISGI-----YDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMN 236
Query: 205 GIHKRGG-TILGTSRGG----HDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR 259
GG +L + RG D I + + +N + ++GGDG+ A+ I E
Sbjct: 237 RFRNLGGFNMLWSGRGKVRNKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAE 296
Query: 260 RGLKVAVAGIPKTIDNDIP--IIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLM 317
R + +++ GIPKTID D+ I+ SFGFDTA + I + ++ N VV++M
Sbjct: 297 RQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEVIGNLCTDVKTGHNVYHVVRVM 356
Query: 318 GRYSGFIAMYATIASR 333
GR + + + + +R
Sbjct: 357 GRSASHVVLECALQTR 372
Score = 33.1 bits (75), Expect = 0.42
Identities = 36/164 (21%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 167 IVCGLYYMYGVHKVLGIEGGYRGFYA----RNTIPLTPKIVNGIHKRGGTILGTSR---- 218
++CGLY + K G+ + G Y + I I +++ G + G S
Sbjct: 854 VLCGLYRRLKLLK--GVCIAFYGLYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHSL 911
Query: 219 -GGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDI 277
+ +K+ +++ + +N + + G + T A+ + E + + +V GIP T N++
Sbjct: 912 FDKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNL 971
Query: 278 --PIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGR 319
+I+ GFD++ + I +A S ++LMGR
Sbjct: 972 IHELIETCVGFDSSTKVYASLIGNVLTDAVSMPKYWHFIRLMGR 1015
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate
1-phosphotransferase. Diphosphate--fructose-6-phosphate
1-phosphotransferase catalyzes the addition of phosphate
from diphosphate (PPi) to fructose 6-phosphate to give
fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is
also known as pyrophosphate-dependent
phosphofructokinase. The usage of PPi-dependent enzymes
in glycolysis presumably frees up ATP for other
processes. TIGR02482 represents the ATP-dependent
6-phosphofructokinase enzyme contained within Pfam
pfam00365: Phosphofructokinase. This model hits
primarily bacterial, plant alpha, and plant beta
sequences [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 539
Score = 82.0 bits (203), Expect = 1e-16
Identities = 75/285 (26%), Positives = 125/285 (43%), Gaps = 37/285 (12%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVH----KVLGIEGGYRGFYARNTIPLTPKIVNG 205
++ GG PG + VI GL+ K+ G GG G N + LT ++++
Sbjct: 72 VILSGGQAPGGHNVI----SGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDT 127
Query: 206 IHKRGG-TILGTSRGGHDT----SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR 260
GG I+G+ R +T +K + + + ++ + ++GGD + A+ + E +
Sbjct: 128 YRNTGGFDIIGSGRTKIETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKH 187
Query: 261 GLKVAVAGIPKTIDNDIP--IIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMG 318
GLK V G+PKTID D+ I+ SFGFDTA + I +A S + ++LMG
Sbjct: 188 GLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSAKKYWHFIRLMG 247
Query: 319 RYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIE-------KR-LKENGHMVIV 370
R + IA+ + + + C+I E L + + KR K VI+
Sbjct: 248 RSASHIALECALQTHP-NVCIIGEE--VAAKKMTLSQLTDYIADVIVKRAAKGKNFGVIL 304
Query: 371 IAEG------AGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKI 409
I EG Q L+ E+ + + Q N L + + K+
Sbjct: 305 IPEGLIEFIPEVQALIKELNNLLAQ-----NVLEEGRKDNVQSKL 344
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include pyrophosphate-dependent
phosphofructokinases. These are found in bacteria as
well as plants. These may be dimeric nonallosteric
enzymes as in bacteria or allosteric heterotetramers as
in plants.
Length = 550
Score = 78.4 bits (193), Expect = 2e-15
Identities = 72/275 (26%), Positives = 119/275 (43%), Gaps = 26/275 (9%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKR 209
IV GG PG + VI + L + G +GG G + I L + +
Sbjct: 77 IVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNT 136
Query: 210 GG-TILGTSRGGHDT----SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKV 264
GG ++ + R +T + ++ + ++ + V+GGD + A+ + E R +GLK
Sbjct: 137 GGFDMICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKT 196
Query: 265 AVAGIPKTIDNDI--PIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSG 322
V G+PKTID D+ I+ SFGFDTA + I +A S VKLMGR +
Sbjct: 197 RVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDARSTGKYWHFVKLMGRSAS 256
Query: 323 FIAMYATIASRDVDCCLIPE-----SPFYLEGPGGLFEYIEKRLKENGHM-VIVIAEG-- 374
IA+ + + + C+I E + + I KR + + V+++ EG
Sbjct: 257 HIALECALKTHP-NICIISEEVSAQKQTLKNITDYMVDVICKRAELGYNFGVVLVPEGLI 315
Query: 375 ----AGQELLSEIMHTMDQQDASGNKLLQDVGLWI 405
+EL++E+ + + N GLW
Sbjct: 316 EFIPEVKELIAELNEILANEVVEFN------GLWK 344
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein;
Provisional.
Length = 1328
Score = 73.9 bits (181), Expect = 1e-13
Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 13/194 (6%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKR 209
+V GG G + VI ++ + ++ G GG G Y+ LT +NGI +
Sbjct: 107 VVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQ 166
Query: 210 GG-TILGTSRGGHDTSK-------IVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRG 261
GG I+ + R +T + I + ++ ++ + V+GGD + A+ + E +R
Sbjct: 167 GGFNIICSGRHKIETEEQMRASLEICEKLK---LHGLVVIGGDDSNTNAAVLAEYFKRNS 223
Query: 262 LKVAVAGIPKTIDNDIP--IIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGR 319
V G PKTID D+ +I+ SFG+DTAV+ I + ++ G V+LMGR
Sbjct: 224 SSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSIMDAIKTEGYGYYFVRLMGR 283
Query: 320 YSGFIAMYATIASR 333
+ I + + +R
Sbjct: 284 SASHITLECGLQTR 297
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 66.5 bits (163), Expect = 2e-11
Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 7/184 (3%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKR 209
++ GG PG + VI + GL + K+ G GG G I +T ++++
Sbjct: 75 VILSGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNT 134
Query: 210 GG-TILGTSRGGHDT----SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKV 264
GG ++G+ R +T +++++ ++ + ++GGD + A+ + E + G K
Sbjct: 135 GGFDMIGSGRTKIETEEQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKT 194
Query: 265 AVAGIPKTIDNDIP--IIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSG 322
V G+PKTID D+ I+ SFGFDTA + I +A S + +KLMGR +
Sbjct: 195 QVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDALSAKKYWHFIKLMGRSAS 254
Query: 323 FIAM 326
IA+
Sbjct: 255 HIAL 258
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 610
Score = 65.6 bits (160), Expect = 3e-11
Identities = 75/306 (24%), Positives = 132/306 (43%), Gaps = 36/306 (11%)
Query: 129 HFRR---VGPREKVYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVH----KVL 181
HF R P +V E V +V CG PG + VI GL+ H +L
Sbjct: 60 HFLRATAKVPDAQVITEHPAVRVGVVFCGRQSPGGHNVI----WGLHDALKAHNPNSVLL 115
Query: 182 GIEGGYRGFYARNTIPLTPKIVNGIHKRGG-TILGTSRGGHDTSKIVD----SIQDRGIN 236
G GG G +A+ T+ +T +++ +GG +LG ++ T++ V+ + + ++
Sbjct: 116 GFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLD 175
Query: 237 QVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDI--PIIDKSFGFDTAVEEAQ 294
+ ++GG + A+ + E K V G+P T++ D+ ++ + GFDT +
Sbjct: 176 GLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNS 235
Query: 295 RAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLF 354
+ IS +A S E ++LMGR + +A+ + S L E LF
Sbjct: 236 QLISNVCTDALSAEKYYYFIRLMGRKASHVALECALQSHPNMVILGEEVAA---SKLTLF 292
Query: 355 EYIEK--------RLKENGHMVIVIAEGAGQE------LLSEIMHTMDQQDASGNKLLQD 400
+ ++ ++ H VI+I EG + LL EI H + +Q S + +
Sbjct: 293 DITKQICDAVQARAEQDKNHGVILIPEGLIESIPEVYALLQEI-HGLLKQGVSVDNISSQ 351
Query: 401 VGLWIS 406
+ W S
Sbjct: 352 LSPWAS 357
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase.
Length = 568
Score = 62.1 bits (151), Expect = 4e-10
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 21/191 (10%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLY-YMYGVHK---VLGIEGGYRGFYARNTIPLTPKIVNG 205
+V GG PG + VI G++ Y+ K + G +GG G + LT + +
Sbjct: 101 VVLSGGQAPGGHNVI----SGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYP 156
Query: 206 IHKRGG-TILGTSRGGHDT----SKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRR 260
+GG ++ + R +T + ++ ++ + V+GGD + A + E R +
Sbjct: 157 YRNQGGFDMICSGRDKIETPEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAK 216
Query: 261 GLKVAVAGIPKTIDND-----IPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVK 315
LK V G PKTID D +P SFGFDTA + I ++A S V+
Sbjct: 217 NLKTRVIGCPKTIDGDLKSKEVPT---SFGFDTACKIYSEMIGNVMIDARSTGKYYHFVR 273
Query: 316 LMGRYSGFIAM 326
LMGR + I +
Sbjct: 274 LMGRAASHITL 284
>gnl|CDD|225740 COG3199, COG3199, Predicted inorganic polyphosphate/ATP-NAD kinase
[General function prediction only].
Length = 355
Score = 34.7 bits (80), Expect = 0.097
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 210 GGTILGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGI 269
+ T+ DT V + +RG++ + GGDGT A + E + G V V GI
Sbjct: 78 QESTPRTTA--EDTINAVRRMVERGVDLIVFAGGDGT---ARDVAEAV---GADVPVLGI 129
Query: 270 P 270
P
Sbjct: 130 P 130
>gnl|CDD|107306 cd06311, PBP1_ABC_sugar_binding_like_3, Periplasmic sugar-binding
domain of uncharacterized ABC-type transport systems.
Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems that share homology with a
family of pentose/hexose sugar-binding proteins of the
type I periplasmic binding protein superfamily, which
consists of two domains connected by a three-stranded
hinge. The substrate specificity of this group is not
known, but it is predicted to be involved in the
transport of sugar-containing molecules and chemotaxis.
Length = 274
Score = 34.3 bits (79), Expect = 0.14
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 14/68 (20%)
Query: 232 DRGINQ-----VYVLGGDGTQKGASA---IFEEIRRRGLKVAVAGIPKTIDNDIPIIDKS 283
DRG++ +YV GD G A I ++ G V + GIP IDN ++
Sbjct: 92 DRGLSSPGAQDLYV-AGDNYGMGRVAGEYIATKLGGNGNIVVLRGIPTPIDN-----ERV 145
Query: 284 FGFDTAVE 291
FD A+
Sbjct: 146 DAFDAAIA 153
>gnl|CDD|234053 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family.
Members of this protein family resemble the widely
distributed ATP-dependent protease La, also called Lon
and LonA. It resembles even more closely LonB, which is
a LonA paralog found in genomes if and only if the
species is capable of endospore formation (as in
Bacillus subtilis, Clostridium tetani, and select other
members of the Firmicutes) and expressed specifically in
the forespore compartment. Members of this family are
restricted to a subset of spore-forming species, and are
very likely to participate in the program of endospore
formation. We propose the designation LonC [Protein
fate, Degradation of proteins, peptides, and
glycopeptides, Cellular processes, Sporulation and
germination].
Length = 615
Score = 34.0 bits (78), Expect = 0.20
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 210 GGTILGTSRGGHDTSKIVDSIQDRGINQVYVLGGD----GTQKGASAIFEEI---RRRGL 262
GG I G S G T ++ +I + I Q + G+ G K IFE+I ++ G+
Sbjct: 520 GGRIDGPSAGAAITLCMISAILGKPIRQDVAITGEISLRGKIKPVGGIFEKIYGAKQAGI 579
Query: 263 KVAVAGIPKTIDNDIP--IIDKSFGFDTAVEEAQR 295
K V IP+ D+P + F + +EE R
Sbjct: 580 KTVV--IPEENLKDVPQGLPGIEVKFVSTIEELMR 612
>gnl|CDD|240303 PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epimerase;
Provisional.
Length = 228
Score = 33.4 bits (77), Expect = 0.23
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKT-IDNDIPII 280
+ K VD G +Q + + T+ A+ +IR G+KV VA PKT ++ P+I
Sbjct: 76 NPEKWVDDFAKAGASQ-FTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLI 134
Query: 281 DK 282
D
Sbjct: 135 DT 136
>gnl|CDD|216543 pfam01513, NAD_kinase, ATP-NAD kinase. Members of this family
include ATP-NAD kinases EC:2.7.1.23, which catalyzes the
phosphorylation of NAD to NADP utilising ATP and other
nucleoside triphosphates as well as inorganic
polyphosphate as a source of phosphorus. Also includes
NADH kinases EC:2.7.1.86.
Length = 243
Score = 32.3 bits (74), Expect = 0.52
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 15/82 (18%)
Query: 227 VDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFGF 286
+ + G++ + VLGGDGT A+ + + + GI + GF
Sbjct: 28 TREMVEEGVDLIVVLGGDGTALDAARLL-----GDHDIPILGINT----------GTLGF 72
Query: 287 DTAVEEAQRAISAAHVEAESFE 308
T + A + ++
Sbjct: 73 LTEFSPEEAAKLLDALLEGEYK 94
>gnl|CDD|223460 COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and
metabolism].
Length = 943
Score = 32.0 bits (73), Expect = 1.1
Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 26/90 (28%)
Query: 88 PTHPNPLQDNPSYSVVKQHFVDVDDSVAQNIVVHQDSPRGRHFRRVGPREKVYFESDDVH 147
PTHPN +N + V Q FVD+ D V D +
Sbjct: 734 PTHPNTSWENARFEVPLQKFVDLSDGE--------------------YGVTVSLLGDCKY 773
Query: 148 ACIVTCGGLCPGLNTVIR---EIVCGLYYM 174
I T G L L T++R E+ Y
Sbjct: 774 G-ISTHGNLL-AL-TLLRSVGELGDWGYRP 800
>gnl|CDD|227462 COG5133, COG5133, Uncharacterized conserved protein [Function
unknown].
Length = 181
Score = 30.7 bits (69), Expect = 1.2
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 14/81 (17%)
Query: 39 TSSRSLTPCATNSNGSMATTENSERKIITGEAGYVLEDVPHFSDYISDLPTHPNPLQDNP 98
+S P + NG + N E +I + Y L + D P HP L+
Sbjct: 31 SSLEERHP-IESENGVLQ---NEEPDLIDQQEIYDL--IADIRD-----PEHPLTLE--- 76
Query: 99 SYSVVKQHFVDVDDSVAQNIV 119
SVV + V D +A N++
Sbjct: 77 QLSVVSLEDISVPDGIAPNVI 97
>gnl|CDD|241323 cd13169, RanBD_NUP50_plant, Ran-binding protein 2, repeat 1.
RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358
kDa nucleoporin, and nuclear pore complex (NPC) protein
Nup358) is a giant nucleoporin that localizes to the
cytosolic face of the NPC. RanBP2 contains a
leucine-rich region, 8 zinc-finger motifs, a cyclophilin
A homologous domain, and 4 RanBDs. Ran is a Ras-like
nuclear small GTPase, which regulates receptor-mediated
transport between the nucleus and the cytoplasm. RanGTP
hydrolysis is stimulated by RanGAP together with the
Ran-binding domain containing acessory proteins RanBP1
and RanBP2. These accessory proteins stabilize the
active GTP-bound form of Ran. All eukaryotic cells
contain RanBP1, but in vertebrates however, the main
RanBP seems to be RanBP2. There is no RanBP2 ortholog in
yeast. Transport complex disassembly is accomplished by
a small ubiquitin-related modifier-1 (SUMO-1)-modified
version of RanGAP that is bound to RanBP2. RanBP1 acts
as a second line of defense against exported
RanGTP#importin complexes which have escaped from
dissociation by RanBP2. RanBP2 also interacts with the
importin subunit beta-1. RabBD shares structural
similarity to the PH domain, but lacks detectable
sequence similarity. The first RanBD2 is present in this
hierarchy.
Length = 112
Score = 29.7 bits (67), Expect = 1.4
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 12/71 (16%)
Query: 349 GPGGLFEYIEKRLKE--NGHMVIVIAEGAGQELLSEIMHTMDQQDASGN-KLLQDVGLWI 405
G G LFE+I KE G + + ++ L +M A GN +LL + L+
Sbjct: 7 GDGALFEFITGGWKERGRGELRVNLSTTGKARL---VMR------AKGNYRLLLNANLFP 57
Query: 406 SQKIRDHFGKK 416
K+ G K
Sbjct: 58 DMKLTKMMGGK 68
>gnl|CDD|180753 PRK06924, PRK06924, short chain dehydrogenase; Provisional.
Length = 251
Score = 30.8 bits (70), Expect = 1.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 352 GLFEYIEKRLKENGHMVIVIAEGAGQEL--LSEIMHT 386
GL E I +L E G VI I+ +EL L+E ++
Sbjct: 12 GLGEAIANQLLEKGTHVISISRTENKELTKLAEQYNS 48
>gnl|CDD|185014 PRK15054, PRK15054, nitrate reductase 2 subunit delta; Provisional.
Length = 231
Score = 30.3 bits (68), Expect = 2.0
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 278 PIIDKSFGFDTAVEEAQRAISA---AHVEAESFENGIGVVKLMGRYSGFIAMYATIASRD 334
P++DK + V + R S HV AES + G +V L+ Y
Sbjct: 47 PLLDKQAEW-CEVFDRGRTTSLLLFEHVHAESRDRGQAMVDLLAEYEK--------VGLQ 97
Query: 335 VDCCLIPES-PFYLE 348
+DC +P+ P YLE
Sbjct: 98 LDCRELPDYLPLYLE 112
>gnl|CDD|220382 pfam09754, PAC2, PAC2 family. This PAC2 (Proteasome assembly
chaperone) family of proteins is found in bacteria,
archaea and eukaryotes. Proteins in this family are
typically between 247 and 307 amino acids in length.
These proteins function as a chaperone for the 26S
proteasome. The 26S proteasome mediates
ubiquitin-dependent proteolysis in eukaryotic cells. A
number of studies including very recent ones have
revealed that assembly of its 20S catalytic core
particle is an ordered process that involves several
conserved proteasome assembly chaperones (PACs). Two
heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4,
promote the assembly of rings composed of seven alpha
subunits.
Length = 220
Score = 29.6 bits (67), Expect = 3.5
Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 40/143 (27%)
Query: 223 TSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDK 282
I+D ++ G+++V LGG +P + + P +
Sbjct: 88 AEAILDWAEELGVSEVITLGG-------------------------LPAGVPHTRPPV-- 120
Query: 283 SFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPE 342
G T E + E + +G+ SG + A L+ E
Sbjct: 121 -TGAATD-PELIDELKEEGPELSEYGGPVGI-------SGLLLGEAEQRGIPA-VSLLAE 170
Query: 343 SPFYLEGPGG---LFEYIEKRLK 362
P YL P L E + K L
Sbjct: 171 VPHYLPDPKAALALLEALSKLLG 193
>gnl|CDD|236049 PRK07562, PRK07562, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1220
Score = 30.3 bits (69), Expect = 3.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 452 AIHGAMAGYTGFTVGPVNGRHAYIPFYRITE 482
A HG GY G +V PV HA P +
Sbjct: 617 AAHGESEGYEGLSVNPVPLDHANCPDQDLVA 647
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 29.4 bits (67), Expect = 4.6
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 103 VKQHFVDVDD-SVAQNIVVHQDSPRGRHFRRVGPREKV 139
V QHF+ V +VA+NI++ + +G R R ++
Sbjct: 84 VHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARI 121
>gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ;
Provisional.
Length = 267
Score = 29.0 bits (66), Expect = 5.5
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 226 IVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKV 264
+ I+ + + +Y++GG G +FE ++ GL V
Sbjct: 213 VARHIEGQDVEDIYLVGGTCCLPGFEEVFE--KQTGLPV 249
>gnl|CDD|173927 cd07766, DHQ_Fe-ADH, Dehydroquinate synthase-like (DHQ-like) and
iron-containing alcohol dehydrogenases (Fe-ADH).
Dehydroquinate synthase-like. This superfamily divides
into two subgroups: the dehydroquinate synthase-like,
and a large metal-containing alcohol dehydrogenases
(ADH), known as iron-containing alcohol dehydrogenases.
Dehydroquinate synthase (DHQS) catalyzes the conversion
of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to
dehydroquinate (DHQ) in the second step of the shikimate
pathway. This pathway involves seven sequential
enzymatic steps in the conversion of erythrose
4-phosphate and phosphoenolpyruvate into chorismate for
subsequent synthesis of aromatic compounds.
Dehydroquinate synthase-like group includes
dehydroquinate synthase, 2-deoxy-scyllo-inosose
synthase, and 2-epi-5-epi-valiolone synthase. The
alcohol dehydrogenases in this superfamily contain a
dehydroquinate synthase-like protein structural fold and
mostly contain iron. They are distinct from other
alcohol dehydrogenases which contains different protein
domains. There are several distinct families of alcohol
dehydrogenases: Zinc-containing long-chain alcohol
dehydrogenases; insect-type, or short-chain alcohol
dehydrogenases; iron-containing alcohol dehydrogenases,
and others. The iron-containing family has a Rossmann
fold-like topology that resembles the fold of the
zinc-dependent alcohol dehydrogenases, but lacks
sequence homology, and differs in strand arrangement.
ADH catalyzes the reversible oxidation of alcohol to
acetaldehyde with the simultaneous reduction of NAD(P)+
to NAD(P)H.
Length = 332
Score = 29.3 bits (66), Expect = 5.8
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 225 KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSF 284
KI + I+ G ++ V+ +G KG + ++ + V + + +F
Sbjct: 13 KIGEEIKRGGFDRALVVSDEGVVKGVGEKVADSLKKLIAVHIFDGVG--------PNPTF 64
Query: 285 GFDTAVEEAQRAISAAHVEA 304
V+EA AA V+A
Sbjct: 65 ---EEVKEAVERARAAEVDA 81
>gnl|CDD|99729 cd06408, PB1_NoxR, The PB1 domain is present in the Epichloe
festucae NoxR protein (NADPH oxidase regulator), a key
regulator of NADPH oxidase isoform, NoxA. NoxA is
essential for growth control of the fungal endophyte in
plant tissue in the process of symbiotic interaction
between a fungi and its plant host. The Epichloe
festucae p67(phox)-like regulator, NoxR, dispensable in
culture but essential in plants for the symbiotic
interaction. Plants infected with a noxR deletion mutant
show severe stunting and premature senescence, whereas
hyphae in the meristematic tissues show increased
branching leading to increased fungal colonization of
pseudostem and leaf blade tissue. The PB1 domain is a
modular domain mediating specific protein-protein
interactions which a play role in many critical cell
processes such as osteoclastogenesis, angiogenesis,
early cardiovascular development, and cell polarity. A
canonical PB1-PB1 interaction, which involves
heterodimerization of two PB1 domains, is required for
the formation of macromolecular signaling complexes
ensuring specificity and fidelity during cellular
signaling. The interaction between two PB1 domain
depends on the type of PB1. There are three types of PB1
domains: type I which contains an OPCA motif, acidic
aminoacid cluster, type II which contains a basic
cluster, and type I/II which contains both an OPCA motif
and a basic cluster. Interactions of PB1 domains with
other protein domains have been described as
noncanonical PB1-interactions. The PB1 domain module is
conserved in amoebas, fungi, animals, and plants.
Length = 86
Score = 27.4 bits (61), Expect = 5.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 406 SQKIRDHFGKKRKMTINLK 424
KIRD FG KR++ I +K
Sbjct: 28 EDKIRDKFGFKRRLKIKMK 46
>gnl|CDD|239169 cd02768, MopB_NADH-Q-OR-NuoG2, MopB_NADH-Q-OR-NuoG2: The
NuoG/Nad11/75-kDa subunit (second domain) of the
NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory
complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is
the first energy-transducting complex in the respiratory
chains of many prokaryotes and eukaryotes. Mitochondrial
complex I and its bacterial counterpart, NDH-1, function
as a redox pump that uses the redox energy to
translocate H+ ions across the membrane, resulting in a
significant contribution to energy production. The
atomic structure of complex I is not known and the
mechanisms of electron transfer and proton pumping are
not established. The nad11 gene codes for the largest
(75-kDa) subunit of the mitochondrial NADH:ubiquinone
oxidoreductase, it constitutes the electron input part
of the enzyme, or the so-called NADH dehydrogenase
fragment. In Escherichia coli, this subunit is encoded
by the nuoG gene, and is part of the 14 distinct
subunits constituting the 'minimal' functional enzyme.
The nad11 gene is nuclear-encoded in animals, plants,
and fungi, but is still encoded in the mitochondrial
genome of some protists. The Nad11/NuoG subunit is made
of two domains: the first contains three binding sites
for FeS clusters (the fer2 domain), the second domain
(this CD), is of unknown function or, as postulated, has
lost an ancestral formate dehydrogenase activity that
became redundant during the evolution of the complex I
enzyme. Although only vestigial sequence evidence
remains of a molybdopterin binding site, this protein
domain family belongs to the molybdopterin_binding
(MopB) superfamily of proteins. Bacterial type II
NADH-quinone oxidoreductases and NQR-type sodium-motive
NADH-quinone oxidoreductases are not homologs of this
domain family.
Length = 386
Score = 28.8 bits (65), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 108 VDVDDSVAQNIVVHQDSPRGRHFRRVGPRE 137
+DV D++ NI V RG R+ PRE
Sbjct: 3 IDVHDALGSNIRVDV---RGGEVMRILPRE 29
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,524,677
Number of extensions: 2749729
Number of successful extensions: 2869
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2786
Number of HSP's successfully gapped: 56
Length of query: 535
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 433
Effective length of database: 6,413,494
Effective search space: 2777042902
Effective search space used: 2777042902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)