RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 009394
(535 letters)
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 579 bits (1494), Expect = 0.0
Identities = 165/481 (34%), Positives = 251/481 (52%), Gaps = 28/481 (5%)
Query: 54 SMATTENSERKIITGEAGYVLEDVPHFSDYISDLP--THPNPLQDNPSYSVVKQHFVDVD 111
++ + K++ +L V + LP +PNP + S F D
Sbjct: 2 AVESRSRVTSKLVKA-HRAMLNSVTQEDLKVDRLPGADYPNPSKKYSSR----TEFRDKT 56
Query: 112 DSVAQNIVV-------HQDSPRGRHFRRVGPREKVYFESDDVHACIVTCGGLCPGLNTVI 164
D + N + S R +++F + IVTCGG+CPGLN VI
Sbjct: 57 DYIMYNPRPRDEPSSENPVSVSPLLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVI 116
Query: 165 REIVCGLYYMYGVHKVLGIEGGYRGFY---ARNTIPLTPKIVNGIHKRGGTILGTSRGGH 221
R I +Y V +V+G GY G ++ I L V IH GGTILG+SRG
Sbjct: 117 RSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQ 176
Query: 222 DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIID 281
D ++VD+++ G+N ++ +GGDGTQ+GA I +E +RRG+ ++V G+PKTIDND+
Sbjct: 177 DPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSH 236
Query: 282 KSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIP 341
++FGF TAVE+A +AI AA+ EA S G+GVVKLMGR SGFIA A +AS + CL+P
Sbjct: 237 RTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVP 296
Query: 342 ESPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDV 401
E+P + + +E+R + VI++AEG GQ+ DASGNK L D+
Sbjct: 297 ENPISEQ---EVMSLLERRFCHSRSCVIIVAEGFGQDWGRG----SGGYDASGNKKLIDI 349
Query: 402 GLWISQKIRDHFGK--KRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAG 459
G+ +++K++ R +KYIDP+YMIRA P +A+D ++C LA A+H AMAG
Sbjct: 350 GVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAG 409
Query: 460 YTGFTVGPVNGRHAYIPFYRITERQNRVVITDRMWARLLSSTNQPSFLDPKKVKQSKEEG 519
TG + + + +P T + + + ++W ++ T ++ + E
Sbjct: 410 ATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITV--DLGSDVRLARKLEIR 467
Query: 520 K 520
+
Sbjct: 468 R 468
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 321 bits (825), Expect = e-104
Identities = 90/498 (18%), Positives = 171/498 (34%), Gaps = 109/498 (21%)
Query: 81 SDYISDLPT------------HPNPLQDNPSYSVVKQHFVDVDDSVAQNIVVHQDSPRGR 128
YI LP + + +K+ F + + I+ +
Sbjct: 11 QKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKN---TYGLPIISFTEGESSL 67
Query: 129 HFRRVGPREKVYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYR 188
F + ++ I+ GG PG + VI + + K+ G +GG
Sbjct: 68 SFSKA------------LNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPL 115
Query: 189 GFYARNTIPLTPKIVNGIHKRGGTILGTSRGGH-----DTSKIVDSIQDRGINQVYVLGG 243
G + I LT ++N GG + +S +K + ++ +N + ++GG
Sbjct: 116 GLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGG 175
Query: 244 DGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDI--PIIDKSFGFDTAVEEAQRAISAAH 301
D + A+ + E ++ G + V G+PKTID D+ I+ SFGFD+A + I
Sbjct: 176 DDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLC 235
Query: 302 VEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGG-----LFEY 356
+A S + VKLMGR + +A+ + + + C++ E + +
Sbjct: 236 RDAMSTKKYWHFVKLMGRSASHVALECALKTHP-NICIVSEEVLAKKKTLSEIIDEMVSV 294
Query: 357 IEKRLKE-NGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGK 415
I KR + V+++ EG E + E+ M + +K + +K+++ F
Sbjct: 295 ILKRSLNGDNFGVVIVPEGLI-EFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVA 353
Query: 416 K-----------------RKMTINLKYIDPT----------------------------- 429
K ++ ++ DP
Sbjct: 354 KLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRG 413
Query: 430 --------------YMIRAVPSNASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNG----- 470
Y R+ + D+ YC L ++A+ + G TG+ N
Sbjct: 414 EYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPT 473
Query: 471 --RHAYIPFYRITERQNR 486
+P + + R
Sbjct: 474 DWIAGGVPLTMLMNMEER 491
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 201 bits (514), Expect = 1e-60
Identities = 95/349 (27%), Positives = 155/349 (44%), Gaps = 59/349 (16%)
Query: 150 IVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHK 208
++T GG PG+N +R +V +Y+ V +V GI GY G + L V I
Sbjct: 6 VLTSGGDSPGMNAAVRAVVRKAIYH--DV-EVYGIYNGYAGLISGKIEKLELGSVGDIIH 62
Query: 209 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLK 263
RGGT L T+R + K + +++ GI + V+GGDG+ GA + E G
Sbjct: 63 RGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH----GFP 118
Query: 264 VAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGF 323
G+P TIDNDIP D + GFDTA+ AI A S E V+++MGR++G
Sbjct: 119 --CVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHER-TYVIEVMGRHAGD 175
Query: 324 IAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN-GHMVIVIAEGAGQELLSE 382
IA++A +A + LIPE+ + + + +++ + H +I++AEG G
Sbjct: 176 IALWAGLAG-GAESILIPEADYDMH---EIIARLKRGHERGKKHSIIIVAEGVG------ 225
Query: 383 IMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYI----DPTYMIRAVPSN 438
G+ ++I + + ++++ L +I P+
Sbjct: 226 ------------------SGVEFGKRIEEETNLETRVSV-LGHIQRGGSPS--------- 257
Query: 439 ASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPFYRITERQNRV 487
A+D V + L A+ + G G VG N + I E ++ V
Sbjct: 258 AADRVLASRLGAYAVELLLEGKGGRCVGIQNNKLVDHDIIEILETKHTV 306
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 201 bits (514), Expect = 1e-60
Identities = 92/349 (26%), Positives = 144/349 (41%), Gaps = 57/349 (16%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKR 209
++T GG PG+N IR +V G+ +V+GI GY G Y + L V+ + R
Sbjct: 7 VLTSGGDAPGMNAAIRGVVRSALT-EGL-EVMGIYDGYLGLYEDRMVQLDRYSVSDMINR 64
Query: 210 GGTILGTSRGGHDTS-----KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKV 264
GGT LG++R +++++ RGI+ + V+GGDG+ GA + E G
Sbjct: 65 GGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM----GFP- 119
Query: 265 AVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFI 324
G+P TIDNDI D + GF TA+ AI + S + I VV++MGRY G +
Sbjct: 120 -CIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQR-ISVVEVMGRYCGDL 177
Query: 325 AMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN-GHMVIVIAEGAGQELLSEI 383
+ A IA + ++PE F E L I+ + + H ++ I E
Sbjct: 178 TLAAAIAG-GCEFVVVPEVEFSRE---DLVNEIKAGIAKGKKHAIVAITEHMCD------ 227
Query: 384 MHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYI----DPTYMIRAVPSNA 439
++ I G++ + T+ L +I P
Sbjct: 228 ------------------VDELAHFIEKETGRETRATV-LGHIQRGGSPV---------P 259
Query: 440 SDNVYCTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPFYRITERQNRVV 488
D + + + AI +AGY G VG N + + E R
Sbjct: 260 YDRILASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDIIDAIENMKRPF 308
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 197 bits (504), Expect = 4e-59
Identities = 88/349 (25%), Positives = 142/349 (40%), Gaps = 59/349 (16%)
Query: 150 IVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHK 208
I+T GG PG+N +R + + G+ +V GI G+ G A + PL + V +
Sbjct: 6 ILTSGGDAPGMNAAVRAVTRVAIAN--GL-EVFGIRYGFAGLVAGDIFPLESEDVAHLIN 62
Query: 209 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLK 263
GT L ++R ++ ++ GI+ V V+GGDG+ GA + G
Sbjct: 63 VSGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH----GFN 118
Query: 264 VAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGF 323
G+P TIDNDIP D + G+DTA A AI A S + +V +MGR G
Sbjct: 119 --SIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASSHHR-VFIVNVMGRNCGD 175
Query: 324 IAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN-GHMVIVIAEGAGQELLSE 382
IAM +A D +IPE P+ +E + +++ + H ++V+AEG
Sbjct: 176 IAMRVGVAC-GADAIVIPERPYDVE---EIANRLKQAQESGKDHGLVVVAEGVM------ 225
Query: 383 IMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYI----DPTYMIRAVPSN 438
+++ + + + L ++ PT
Sbjct: 226 ------------------TADQFMAELKKYGDFDVRANV-LGHMQRGGTPT--------- 257
Query: 439 ASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPFYRITERQNRV 487
SD V + L A+H + G G VG NG+ + + +R
Sbjct: 258 VSDRVLASKLGSEAVHLLLEGKGGLAVGIENGKVTSHDILDLFDESHRG 306
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 190 bits (484), Expect = 3e-55
Identities = 61/338 (18%), Positives = 123/338 (36%), Gaps = 31/338 (9%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYG-VHKVLGIEGGYRGFYARNTIPLTPKIVNGIHK 208
GG+ +N ++ G + ++ G G + I + I
Sbjct: 8 YAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISA 67
Query: 209 ---RGGTILGTSR--------GGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEI 257
G+ R + ++++ + I + GG + + +
Sbjct: 68 LRYTPSGAFGSCRYKLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLS 127
Query: 258 RRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFE---NGIGVV 314
G + +PKT+DND+PI D GF + + + A + S + V+
Sbjct: 128 GTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSATSTKVFVL 187
Query: 315 KLMGRYSGFIAMYATIASRD----VDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVIV 370
++MGR++G+IA +AS L PE F + ++ +K+ G+ +V
Sbjct: 188 EVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQ---KFLAKVDSCVKKFGYCSVV 244
Query: 371 IAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTY 430
++EG + + + +DA G+ L V ++ +++ G K + Y
Sbjct: 245 VSEGVKGD-DGKFLSDQGVRDAFGHAQLGGVAPVVASMVKEGLGLKYHWGV------ADY 297
Query: 431 MIRAVPSNAS--DNVYCTLLAHSAIHGAMAGYTGFTVG 466
+ RA AS D + +A+ A+ G+
Sbjct: 298 LQRAARHIASKTDVEQAYAMGQAAVEFAVQGHNSVMPT 335
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 186 bits (475), Expect = 2e-51
Identities = 65/364 (17%), Positives = 119/364 (32%), Gaps = 55/364 (15%)
Query: 150 IVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVLGIEGGYRGFYARNTI-PLTPKIVNGIH 207
IV G G+N+ + + + G H+ I G+ G ++ L K + G
Sbjct: 398 IVNVGAPAGGINSAVYSMATYCMSQ--G-HRPYAIYNGWSGLARHESVRSLNWKDMLGWQ 454
Query: 208 KRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR-RGLK 263
RGG+ +GT+R D I Q + + ++GG + + +
Sbjct: 455 SRGGSEIGTNRVTPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFR 514
Query: 264 VAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGF 323
+ + IP T+ N++P + S G DTA+ A S VV G SG+
Sbjct: 515 IPMVLIPATLSNNVPGTEYSLGSDTALNALMEYCDVVKQSASSTRGRAFVVDCQGGNSGY 574
Query: 324 IAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN-----GHMVIVIAEGAGQE 378
+A YA++A +PE LE EY+ + ++ +I+ + A
Sbjct: 575 LATYASLAV-GAQVSYVPEEGISLEQLSEDIEYLAQSFEKAEGRGRFGKLILKSTNA--- 630
Query: 379 LLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYI----DPTYMIRA 434
S+ + + I+ + F K ++ P+
Sbjct: 631 --SKALSATKLAE------------VITAEADGRFDA--KPAY-PGHVQQGGLPS----- 668
Query: 435 VPSNASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPFYRITE-------RQNRV 487
D T +A A+ + I++ + + V
Sbjct: 669 ----PIDRTRATRMAIKAVGFIKDNQAAIAEARAAEENFNADDKTISDTAAVVGVKGSHV 724
Query: 488 VITD 491
V
Sbjct: 725 VYNS 728
Score = 161 bits (410), Expect = 1e-42
Identities = 76/376 (20%), Positives = 133/376 (35%), Gaps = 73/376 (19%)
Query: 150 IVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVLGIEGGYRGFY---ARNTIPLTPKIVNG 205
++T GG PG+N+ +R IV ++ G + + GY G + V G
Sbjct: 8 VMTSGGDAPGMNSNVRAIVRSAIFK--G-CRAFVVMEGYEGLVRGGPEYIKEFHWEDVRG 64
Query: 206 IHKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYVLGGDGTQKGASAIFEE---- 256
GGT +GT+R + + G++ + V GGDG+ GA E
Sbjct: 65 WSAEGGTNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSL 124
Query: 257 -------------IRRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVE 303
R + + G +IDND+ D + G +A++ +AI
Sbjct: 125 IEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICKAIDYVEAT 184
Query: 304 AESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE 363
A S VV++MGR G++A+ A IA+ D IPE P + + + +
Sbjct: 185 ANSHSR-AFVVEVMGRNCGWLALLAGIAT-SADYIFIPEKPA---TSSEWQDQMCDIVSK 239
Query: 364 N-----GHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRK 418
+ ++V+AEGA L+ I + + + + D G +
Sbjct: 240 HRSRGKRTTIVVVAEGAIAADLTPISPSD-----------------VHKVLVDRLGLDTR 282
Query: 419 MTINLKYI----DPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAGYTGFT---VGPVNGR 471
+T L ++ A D + TL A++ + + +
Sbjct: 283 ITT-LGHVQRGGTAV---------AYDRILATLQGLEAVNAVLESTPDTPSPLIAVNENK 332
Query: 472 HAYIPFYRITERQNRV 487
P + V
Sbjct: 333 IVRKPLMESVKLTKAV 348
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 184 bits (468), Expect = 2e-50
Identities = 55/250 (22%), Positives = 104/250 (41%), Gaps = 9/250 (3%)
Query: 150 IVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHK 208
++ G G+N +R V GL G ++VL + G+ G V G
Sbjct: 405 VMNVGAPAAGMNAAVRSTVRIGLIQ--G-NRVLVVHDGFEGPAKGQIEEAGWSYVGGWTG 461
Query: 209 RGGTILGTSRG--GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRG-LKVA 265
+GG+ LG+ R +I +I I + ++GG G + E ++ L +
Sbjct: 462 QGGSKLGSKRTLPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIP 521
Query: 266 VAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIA 325
IP T+ N++P D S G DTA+ A + + +++ MG Y G++A
Sbjct: 522 FVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQSAAGTKRRVFIIETMGGYCGYLA 581
Query: 326 MYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN-GHMVIVIAEGAGQELLSEIM 384
A +A+ D I E PF + E++ +++K +++ E + ++ +
Sbjct: 582 TMAGLAA-GADAAYIFEEPFTIRDLQANVEHLVQKMKTTVKRGLVLRNEKCNENYTTDFI 640
Query: 385 HTMDQQDASG 394
+ ++ G
Sbjct: 641 FNLYSEEGKG 650
Score = 172 bits (437), Expect = 2e-46
Identities = 75/372 (20%), Positives = 145/372 (38%), Gaps = 67/372 (18%)
Query: 150 IVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVLGIEGGYRGFY--ARNTIPLTPKIVNGI 206
++T GG G+N +R +V G++ G +V + GY+G + T + V+ +
Sbjct: 20 VLTSGGDAQGMNAAVRAVVRVGIFT--G-ARVFFVHEGYQGLVDGGDHIREATWESVSMM 76
Query: 207 HKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEI---- 257
+ GGT++G++R + ++ RGI + V+GGDG+ GA E
Sbjct: 77 LQLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLL 136
Query: 258 -------------RRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEA 304
R + + G+ +IDND D + G D+A+ + A A
Sbjct: 137 SDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITEIVDAITTTA 196
Query: 305 ESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN 364
+S + V+++MGR+ G++A+ +++ D IPE P L + + +
Sbjct: 197 QSHQR-TFVLEVMGRHCGYLALVTSLSC-GADWVFIPECPPDDNWEDHLCRRLSET-RTR 253
Query: 365 G--HMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTIN 422
G +I++AEGA D +G + + + + G ++T+
Sbjct: 254 GSRLNIIIVAEGAI--------------DRNGKPITSE---GVKDLVVRRLGYDTRVTV- 295
Query: 423 LKYI----DPTYMIRAVPSNASDNVYCTLLAHSAIHGAMAGYTGFT---VGPVNGRHAYI 475
L ++ P+ A D + + + A+ + G V + +
Sbjct: 296 LGHVQRGGTPS---------AFDRILGSRMGVEAVMALLEGTPDTPACVVSLSGNQAVRL 346
Query: 476 PFYRITERQNRV 487
P + V
Sbjct: 347 PLMECVQVTKDV 358
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 182 bits (463), Expect = 2e-49
Identities = 57/307 (18%), Positives = 108/307 (35%), Gaps = 24/307 (7%)
Query: 109 DVDDSVAQNIVVHQDSPRGRHFR----------RVGPREKVYFESDDVHACIVTCGGLCP 158
V ++ R + F + + ES ++ I+ G
Sbjct: 552 TVSAAIEAKDFDKALQLRDQEFATSYENFLSVSKYDDGSYLVPESSRLNIAIIHVGAPTS 611
Query: 159 GLNTVIREIV-CGLYYMYGVHKVLGIEGGYRGFYARNTI-PLTPKIVNGIHKRGGTILGT 216
LN R L G H+V I G+ G + L V H GG+ +GT
Sbjct: 612 ALNPATRVATLNSLAK--G-HRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGSEIGT 668
Query: 217 SRG--GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR-RGLKVAVAGIPKTI 273
+R D + Q + + ++GG + + + + +P T+
Sbjct: 669 NRSLPSDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATV 728
Query: 274 DNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASR 333
N++P + S G DT + A A + VV++ G YSG++A YA + +
Sbjct: 729 SNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASASRRRTFVVEVQGGYSGYLASYAGLIT- 787
Query: 334 DVDCCLIPESPFYLEGPGGLFEYIEKRLKENG-----HMVIVIAEGAGQELLSEIMHTMD 388
PE+P L+ E + + +E+ + + E A + ++++ +
Sbjct: 788 GALAVYTPENPINLQTVQEDIELLTRTYEEDDGKNRSGKIFIHNEKASKVYTTDLIAAII 847
Query: 389 QQDASGN 395
+ G
Sbjct: 848 GEAGKGR 854
Score = 164 bits (417), Expect = 2e-43
Identities = 66/268 (24%), Positives = 110/268 (41%), Gaps = 38/268 (14%)
Query: 150 IVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVLGIEGGYRGFYA--RNTIPLTPKIVNGI 206
I+T GG PG+N +R + G++Y G KV GY G L + V G+
Sbjct: 215 IITSGGDAPGMNAAVRAVTRAGIFY--G-CKVYACYEGYTGLVKGGDMLKELQWQDVRGL 271
Query: 207 HKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEI---- 257
GGTI+GT+R + ++ GI+ + V GGDG+ GA +E
Sbjct: 272 LSIGGTIIGTARCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELI 331
Query: 258 -------------RRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEA 304
+ + G+ +IDND+ D + G +++E + A
Sbjct: 332 KELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSSLERIIELVDYIDATA 391
Query: 305 ESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN 364
S VV++MGR+ G++ + + IA+ D IPE P + ++K +
Sbjct: 392 ASHSR-AFVVEVMGRHCGWLGLMSGIAT-GADYIFIPERPP---SESNWKDDLKKVCLRH 446
Query: 365 -----GHMVIVIAEGAGQELLSEIMHTM 387
+++AEGA + L+ I
Sbjct: 447 REKGRRKTTVIVAEGAIDDQLNPITSEE 474
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 180 bits (458), Expect = 4e-49
Identities = 64/363 (17%), Positives = 116/363 (31%), Gaps = 47/363 (12%)
Query: 150 IVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVLGIEGGYRGFY-ARNTIPLTPKIVNGIH 207
IV G LN R L + HK I G+ G L+ V H
Sbjct: 398 IVHVGAPSAALNAATRAATLYCLSHG---HKPYAIMNGFSGLIQTGEVKELSWIDVENWH 454
Query: 208 KRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRR-RGLKV 264
GG+ +GT+R D I Q ++ + +LGG + + + + +
Sbjct: 455 NLGGSEIGTNRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNI 514
Query: 265 AVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFI 324
+ IP T+ N++P + S G DT + A + + V ++ G +SG+I
Sbjct: 515 PMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTDDIKQSASATRRRVFVCEVQGGHSGYI 574
Query: 325 AMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENG-----HMVIVIAEGAGQEL 379
A + + + PE L +++ + + ++V E A
Sbjct: 575 ASFTGLIT-GAVSVYTPEKKIDLASIREDITLLKENFRHDKGENRNGKLLVRNEQA---- 629
Query: 380 LSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYI----DPTYMIRAV 435
S + T Q + IS+ + FG + I ++ P+
Sbjct: 630 -SSVYST------------QLLADIISEASKGKFGV--RTAI-PGHVQQGGVPS------ 667
Query: 436 PSNASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPFYRITERQNRVVITDRMWA 495
+ D V + A I P + + V + A
Sbjct: 668 ---SKDRVTASRFAVKCIKFIEQWNKKNEASPNTDAKVLRFKFDTHGEKVPTVEHEDDSA 724
Query: 496 RLL 498
++
Sbjct: 725 AVI 727
Score = 164 bits (416), Expect = 2e-43
Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 38/264 (14%)
Query: 150 IVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVLGIEGGYRGFYA--RNTIPLTPKIVNGI 206
++T GG PG+N +R +V G+++ G V + GY G + + + V G
Sbjct: 10 VMTSGGDSPGMNAAVRAVVRTGIHF--G-CDVFAVYEGYEGLLRGGKYLKKMAWEDVRGW 66
Query: 207 HKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYVLGGDGTQKGASAIFEEI---- 257
GGT++GT+R + ++ +GI+ + V GGDG+ GA E
Sbjct: 67 LSEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLV 126
Query: 258 -------------RRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEA 304
+++ G+ +IDND+ D + G +A+E + A
Sbjct: 127 DELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVDYIDATA 186
Query: 305 ESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN 364
+S VV++MGR+ G++A+ A IA+ D IPE G + +++ + +
Sbjct: 187 KSHSR-AFVVEVMGRHCGWLALMAGIAT-GADYIFIPERAV---PHGKWQDELKEVCQRH 241
Query: 365 -----GHMVIVIAEGAGQELLSEI 383
+ I++AEGA + L+ +
Sbjct: 242 RSKGRRNNTIIVAEGALDDQLNPV 265
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 177 bits (450), Expect = 9e-48
Identities = 53/256 (20%), Positives = 101/256 (39%), Gaps = 15/256 (5%)
Query: 150 IVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVLGIEGGYRGFYARNTI-PLTPKIVNGIH 207
I+ G G+N+ + + + H I G+ G ++ + + G
Sbjct: 576 IINVGAPAGGMNSAVYSMATYCMSRG---HVPYAIHNGFSGLARHESVRSINWLDIEGWG 632
Query: 208 KRGGTILGTSR---GGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRG-LK 263
GG+ +GT+R D I + G + + ++GG + L+
Sbjct: 633 SLGGSEIGTNRTLPNDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLR 692
Query: 264 VAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGF 323
+ + IP TI N++P + S G DT + A + N + VV++ G SG+
Sbjct: 693 IPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYCDVIKQSAAATRNRVFVVEVQGGNSGY 752
Query: 324 IAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN-----GHMVIVIAEGAGQE 378
IA +A +A +PE L +++ + +I+ +E A +
Sbjct: 753 IATHAQLAC-GAQISYVPEEGISLAQLEMDINSLKESFANDQGKTKSGRLILKSENASKV 811
Query: 379 LLSEIMHTMDQQDASG 394
L +E++ T+ +ASG
Sbjct: 812 LTTEVISTIIDDEASG 827
Score = 170 bits (432), Expect = 3e-45
Identities = 86/392 (21%), Positives = 140/392 (35%), Gaps = 54/392 (13%)
Query: 36 SFVTSSRSLTPCATNSNGSMATTENSERKIITGEAGYVLEDVPHFSDYISDLPTHPNPLQ 95
+ + T + RK + S + L +P+Q
Sbjct: 61 QLILDPEHAASVSQIDQNIRNLTRSLYRKDWRSIQSNIAFKSSSLSKLVKLLKDGGHPVQ 120
Query: 96 DNPSYSVVKQHFVDVDDSVAQNIVV----HQDSPRGRHFRRVGPREKVYFESDDVHAC-- 149
+P+ + V D + I + + R EK Y DD
Sbjct: 121 QSPNE--ISPFEVYTVDPLGSLIGFSGFKNPFAVNERSLLPKVSEEKAYRAEDDSEKLLN 178
Query: 150 -------IVTCGGLCPGLNTVIREIV-CGLYYMYGVHKVLGIEGGYRGFY---ARNTIPL 198
++T GG PG+N +R +V G+Y G KV I GY G +
Sbjct: 179 PVRKTIGVMTSGGDSPGMNPFVRAVVRAGIYK--G-CKVFCIHEGYEGLVRGGEKYIKET 235
Query: 199 TPKIVNGIHKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYVLGGDGTQKGASAI 253
V G GGT +GT+R K ++ D GI+ + V GGDG+ GA
Sbjct: 236 QWHDVRGWLVEGGTNIGTARCKEFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRF 295
Query: 254 FEEI-----------------RRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRA 296
E + + G +IDND+ D + G ++++ RA
Sbjct: 296 RSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSSTDATIGAFSSLDRICRA 355
Query: 297 ISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEY 356
I A S +V++MGR+ G++ + A +A+ D LIPE P +
Sbjct: 356 IDYIDATANSHSR-AFIVEVMGRHCGWLGLLAGLAT-SADYILIPEKPA---SSREWQDQ 410
Query: 357 IEKRLKEN-----GHMVIVIAEGAGQELLSEI 383
+ + ++ ++++AEGA LS I
Sbjct: 411 MCDIVGKHRARGKRKTIVIVAEGAISNDLSPI 442
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 2e-08
Identities = 46/317 (14%), Positives = 87/317 (27%), Gaps = 85/317 (26%)
Query: 127 GRHFRRVGPREKVYFESDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGG 186
G + + + D H I +IV +H GG
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNH--------FKDTYGFSILDIVINNPVNLTIH-----FGG 1678
Query: 187 YRGFYAR-NTIPLTPKIVNGIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYVLGGDG 245
+G R N + + T G ++ + + Y +
Sbjct: 1679 EKGKRIRENYSAMIFE--------------TIVDGKLKTEKIFKEINEHSTS-YTFRSEK 1723
Query: 246 --------TQ---KGAS-AIFEEIRRRGLKV---AVAGIPKTIDNDIPIIDKSFGFDTAV 290
TQ A FE+++ +GL AG S G
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG-------------HSLG----- 1765
Query: 291 EEAQRAISA--AHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLI-PESPFYL 347
E +A + + S E+ + VV G + + I P
Sbjct: 1766 -E----YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 348 EGPGGLFEYIEKRLKENGHMV-----------IVIA-EGAGQELLSEIMHTMDQQDASGN 395
L +E+ K G +V V A + + ++ +++ + Q
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII 1880
Query: 396 KLLQDVGLWISQKIRDH 412
+L + + L +++ H
Sbjct: 1881 ELQKSLSL---EEVEGH 1894
Score = 55.8 bits (134), Expect = 3e-08
Identities = 87/567 (15%), Positives = 155/567 (27%), Gaps = 215/567 (37%)
Query: 39 TSSRSLTPCATNSNGSMATTENSERKIITGEAGYVLEDVP---HFS------DYISDLPT 89
S+R LT S+GS+ +L VP F + LP
Sbjct: 4 YSTRPLTL----SHGSLEHV--------------LL--VPTASFFIASQLQEQFNKILPE 43
Query: 90 HPNPL-QDNPSYSVVK--QHFVD-VDDSVAQNIVVHQDSPRG---RHFRRVGPREKVYFE 142
D+ + + F+ V V + V D F E Y E
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF------ENCYLE 97
Query: 143 SDDVHACIVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFY-ARNTI--PLT 199
+D+HA +E++ + + AR P
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELI-------------------KNYITARIMAKRPFD 138
Query: 200 PKIVNGIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYVL-GGDGTQKGASAIFEEIR 258
K S + ++ + G Q+ + GG G FEE+R
Sbjct: 139 KKS--------------------NSALFRAVGE-GNAQLVAIFGGQGN---TDDYFEELR 174
Query: 259 R---------RGLKVAVAGIPKTIDNDIPIIDKSF--GFD--TAVEEAQRA------ISA 299
L A + +K F G + +E +S
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 300 AHVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEK 359
+ S IGV++L A Y + ++ + PG L Y++
Sbjct: 235 P-I---SC-PLIGVIQL--------AHYV-VTAKLLGFT-----------PGELRSYLKG 269
Query: 360 RLKENGHMV--IVIAE-GAGQELLSEIMHTMDQQDASGNKLLQDVGLWI---SQKIRDHF 413
+ +V + IAE + + + + +L +I + +
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAI--------TVL----FFIGVRCYEAYPN- 316
Query: 414 GKKRKMTINLKYID---------PTYM--IRAVPSN------ASDNVYCTLLAHSAIHGA 456
++ ++ P+ M I + N + L A + +
Sbjct: 317 -----TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH--LPAGKQVEIS 369
Query: 457 MAGYTGFTVGPVNGRHAYIPFYRITERQNRVV-------ITDRMWARLLSSTNQPSFLDP 509
+ VNG +N VV + R + PS LD
Sbjct: 370 L----------VNG------------AKNLVVSGPPQSLYGLNLTLRKAKA---PSGLDQ 404
Query: 510 KKVKQSKEEGKLDTQ-L-----FNHAP 530
++ S+ + K + L F H+
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPF-HSH 430
Score = 44.3 bits (104), Expect = 1e-04
Identities = 71/367 (19%), Positives = 109/367 (29%), Gaps = 135/367 (36%)
Query: 1 MDSSSIS-------STAASFVTLKFRCFDPTYAYSATPNHRRSFVTSSRSLTPCATNSNG 53
+ S IS A VT K F P + + T S G
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPG-----------ELRSYLKGATGH---SQG 276
Query: 54 -------SMATTENS----ERKIIT-----GEAGYVLEDVPHFSDYISDLPTHPNPLQDN 97
+ + S RK IT G Y E P+ S LP P+ L+D+
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY--EAYPNTS-----LP--PSILEDS 327
Query: 98 -------PSY--SVVKQHFVDVDDSVAQNIVVHQDSPRGRHFRRV------GPREKVYFE 142
PS S+ V D V + + P G+ V G +
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNK---TNSHLPAGKQ---VEISLVNGAK------ 375
Query: 143 SDDVHACIVTCG---GLCPGLNTVIREIVC--GLYYMYGVHKVLG----IEGGYRGFYAR 193
+V G L GLN +R+ GL ++ ++ R +
Sbjct: 376 ------NLVVSGPPQSLY-GLNLTLRKAKAPSGL----DQSRIPFSERKLKFSNR--FLP 422
Query: 194 NTIP-----LTP---KIVNGIHKRGGTILGTS--------RGGHDTSKIVDSIQDRGINQ 237
P L P I + K + G D + SI +R ++
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 238 V----------------YVLG-GDGTQKGASAIFEEIRR-RGLKVAVAGIPKTIDNDIPI 279
+ ++L G G G + + G++V VAG T+D +
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG---TLDIN--- 536
Query: 280 IDKSFGF 286
D +GF
Sbjct: 537 PDDDYGF 543
Score = 29.2 bits (65), Expect = 4.0
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 19/70 (27%)
Query: 374 GAGQELLS------EIMHTMDQQDASGNKLLQDVGLWISQKIRD-------HFGKKRKMT 420
G G +L ++ + D G I + + HFG ++
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNH------FKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 421 INLKYIDPTY 430
I Y +
Sbjct: 1684 IRENYSAMIF 1693
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 7e-06
Identities = 64/421 (15%), Positives = 122/421 (28%), Gaps = 138/421 (32%)
Query: 100 YSVVKQHFVDVDDSVAQNIVVHQDSPRGRHFRRVGPREKVYFES----DDV--------- 146
+ ++ D + NI + S + RR+ + K Y +V
Sbjct: 206 LYQIDPNWTSRSDH-SSNIKLRIHSIQAE-LRRL-LKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 147 -HAC--IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIV 203
+C ++T T +++ L H L + L K +
Sbjct: 263 NLSCKILLT---------TRFKQVTDFLSAATTTHISL--DHHSMTLTPDEVKSLLLKYL 311
Query: 204 N-----------GIHKRGGTILGTS-RGGHDT--------SKIVDSIQDRGINQVYVLGG 243
+ + R +I+ S R G T + +I + +N +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE---- 367
Query: 244 DGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFG---FDTAVEEAQRAISAA 300
E R+ +++V P IP FD + ++
Sbjct: 368 ----------PAEYRKMFDRLSV--FPP--SAHIPT--ILLSLIWFDVIKSDVMVVVNKL 411
Query: 301 H----VEAESFENGIGV--------VKLMGRYS---GFIAMYATIASRDVDCCLIPESPF 345
H VE + E+ I + VKL Y+ + Y + D D + P
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 346 YLEGPGGLFEYIEKRLKENG-HMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLW 404
Y + +I G H+ + ++ + D +
Sbjct: 472 YF------YSHI-------GHHL-----KNIEH----------PERMTLFRMVFLDFR-F 502
Query: 405 ISQKIRDHFGKKRKMTINL-----------KYI---DPTY--MIRAVPS---NASDNVYC 445
+ QKIR H + ++ YI DP Y ++ A+ +N+ C
Sbjct: 503 LEQKIR-HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 446 T 446
+
Sbjct: 562 S 562
Score = 39.5 bits (91), Expect = 0.003
Identities = 28/275 (10%), Positives = 77/275 (28%), Gaps = 68/275 (24%)
Query: 301 HVEAESFENGIGVVKLMGRYSGFIAMYATIASRDVDCCLIPESPFYLEGPGGLFE----- 355
H++ E G + +Y ++++ + DC + + P +
Sbjct: 6 HMDFE-----TGEHQY--QYKDILSVFEDAFVDNFDCKDVQDM------PKSILSKEEID 52
Query: 356 --YIEKRLKENGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHF 413
+ K + +E++ + + + + + ++ I+
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK----------FLMSPIKTEQ 102
Query: 414 -GKKRKMTINLKYIDPTYMIRAVPSNASDNV-----YCTL------LAHS---AIHGAMA 458
+ ++ D Y A NV Y L L + I G +
Sbjct: 103 RQPSMMTRMYIEQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-VL 159
Query: 459 GYTG-----------FTVGPVNGRHAY-IPFYRITERQNRVVITDRMWARLLSSTNQPSF 506
G +G + V + + + + + ++ ++ + S
Sbjct: 160 G-SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 507 LDPKKVKQSKEEGK------LDTQLFNHAPKILNN 535
+K + L ++ + + +L N
Sbjct: 219 H-SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Score = 36.4 bits (83), Expect = 0.029
Identities = 32/236 (13%), Positives = 75/236 (31%), Gaps = 55/236 (23%)
Query: 198 LTPKIVNGIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKG----ASAI 253
L+ + ++ I + GT R + ++ + V + + S I
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLR-------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 254 FEEIRRRGLKVAVAGIPKTID---NDIPIIDKSFGFDTAV--EEAQRAISAAHVEAESFE 308
E R+ + + + D ND + K V + + A +E
Sbjct: 99 KTEQRQPSMMTRM--YIEQRDRLYNDNQVFAKYN-----VSRLQPYLKLRQALLELRP-A 150
Query: 309 NGIGVVKLMGRYSGF----IAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKEN 364
+ ++ + G +A+ S V C + +F ++ + +
Sbjct: 151 KNV-LIDGVL---GSGKTWVAL-DVCLSYKVQCKM----------DFKIF-WLNLKNCNS 194
Query: 365 GHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGL---WISQKIRDHFGKKR 417
V+ E+L ++++ +D S + ++ L I ++R K
Sbjct: 195 PETVL--------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Score = 30.6 bits (68), Expect = 1.9
Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 34/98 (34%)
Query: 62 ERKII--------TGEAGYVLEDVPHFSDYISDLPTHPNPLQDNPSYS-VVK--QHFVDV 110
E+KI +G L+ + + YI D ++P Y +V F+
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICD---------NDPKYERLVNAILDFL-- 552
Query: 111 DDSVAQNIVVHQDSPRGRHFRRV-----GPREKVYFES 143
+ +N++ ++ + E ++ E+
Sbjct: 553 -PKIEENLI------CSKYTDLLRIALMAEDEAIFEEA 583
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 35.6 bits (82), Expect = 0.050
Identities = 30/225 (13%), Positives = 53/225 (23%), Gaps = 95/225 (42%)
Query: 196 IPLTPKIVNGIHK-RGGTILGTSRGGHDT-SKIVDSIQDRG-----------IN-----Q 237
I ++ +H G G+ GG + IN
Sbjct: 1029 ITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWV 1088
Query: 238 V-YVLGGDGTQK--------GASAI---FEEIRRRGLKVAVAGIPKTIDNDIPIIDKSFG 285
++ G K ++ E I ++ + G G
Sbjct: 1089 NMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVG----------------G 1132
Query: 286 FDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASR--DVDCCLIPES 343
+D EE G F M AT ++ + + P
Sbjct: 1133 YDDFQEE-----------------GSF---------EFGNMKAT-SNTLEEFEHGRTPAE 1165
Query: 344 ---PFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIMH 385
P G F + A+GAG +++ +
Sbjct: 1166 MSRPATTTRNG--F---------------MEAQGAGIQIIMQADL 1193
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural
genomics, joint center for structural genomics; HET:
MSE; 1.23A {Salmonella typhimurium}
Length = 355
Score = 31.1 bits (71), Expect = 0.87
Identities = 4/59 (6%), Positives = 14/59 (23%), Gaps = 2/59 (3%)
Query: 184 EGGYRGFYARNTIPLTPKIVNGIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYVLG 242
+ + + N + + ++ D I G + ++
Sbjct: 5 KIHHHHHHMNNQEKNMLG--FNQDEYLTSAREIIAARQKAEQVADEIYQAGFSSLFFAS 61
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 2.1
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 11/32 (34%)
Query: 407 QKIRDHFGKKRKMTINLK-YID---PTYMIRA 434
Q ++ K+ +LK Y D P I+A
Sbjct: 20 QALK-------KLQASLKLYADDSAPALAIKA 44
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA
complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4}
SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Length = 259
Score = 29.6 bits (67), Expect = 2.4
Identities = 4/50 (8%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 253 IFEEIRRRGLKVAVAGIPKTIDNDIPIIDKSF-GFDTAVEEAQRAISAAH 301
+ + + RG+K ++ + + + ++ + ++ + + H
Sbjct: 196 LLDSLNDRGIKFGLSNVLEHHGKENTLLKEWSKKYNVKHLNKKYVFNIYH 245
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich
domain 2, protein-ADP COM transferase; HET: ADP; 2.30A
{Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Length = 337
Score = 29.3 bits (66), Expect = 3.6
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 9/107 (8%)
Query: 200 PKIVNGIHKRGG--TILGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEI 257
P + + K G + T + G T + + + GGDGT + + I
Sbjct: 45 PDALIKLEKAGYETSAYATEKIGDAT-LEAERAMHENYDVLIAAGGDGT---LNEVVNGI 100
Query: 258 RRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEA 304
+ + + IP ND ++ + A I H
Sbjct: 101 AEKPNRPKLGVIPMGTVNDFG---RALHIPNDIMGALDVIIEGHSTK 144
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2;
1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A*
2hj9_A*
Length = 342
Score = 29.0 bits (65), Expect = 3.7
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 17/74 (22%)
Query: 227 VDSIQDRGINQVYVLGGDGTQKGASAIFE------------EIRRRGLKVAVAGI----- 269
VD++ + G + + G G AI + + + +
Sbjct: 250 VDALAELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMAEAIKWDLEDKPV 309
Query: 270 PKTIDNDIPIIDKS 283
P D I+ K+
Sbjct: 310 PTVYSGDFEIVTKA 323
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.55A {Enterococcus faecalis}
Length = 899
Score = 28.6 bits (63), Expect = 5.9
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 88 PTHPNPLQDNPSYSVVKQHFVDVDDSVAQNIVVHQDSPRG 127
P + +NP+ +Q FV+V D + + + +
Sbjct: 699 PNQVSDTWENPTNPQHQQAFVNVHDQ-NKGVTIFNEGLNE 737
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,349,581
Number of extensions: 536514
Number of successful extensions: 1533
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1420
Number of HSP's successfully gapped: 41
Length of query: 535
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 437
Effective length of database: 3,965,535
Effective search space: 1732938795
Effective search space used: 1732938795
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.6 bits)