RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 009394
(535 letters)
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 246 bits (629), Expect = 2e-75
Identities = 80/415 (19%), Positives = 148/415 (35%), Gaps = 78/415 (18%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKR 209
I+ GG PG + VI + + K+ G +GG G + I LT ++N
Sbjct: 74 IILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNT 133
Query: 210 GGTILGTSRGGH-----DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKV 264
GG + +S +K + ++ +N + ++GGD + A+ + E ++ G +
Sbjct: 134 GGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENI 193
Query: 265 AVAGIPKTIDNDIP--IIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSG 322
V G+PKTID D+ I+ SFGFD+A + I +A S + VKLMGR +
Sbjct: 194 QVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSAS 253
Query: 323 FIAMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKE-----NGHMVIVIAEGAG- 376
+A+ + + C + E + + + + + + + V+++ EG
Sbjct: 254 HVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIE 313
Query: 377 -----QELLSEIMHTMD------------------------------------------- 388
+ L+ E+ D
Sbjct: 314 FIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIK 373
Query: 389 ---QQDASGNKLLQDV--GLWISQKIRDHFGKKRKMTINLKYIDP-----TYMIRAVPSN 438
++D GN + V + I+ +K P Y R+ +
Sbjct: 374 SILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPS 433
Query: 439 ASDNVYCTLLAHSAIHGAMAGYTGFTVGPVNGRHAY-------IPFYRITERQNR 486
D+ YC L ++A+ + G TG+ N +P + + R
Sbjct: 434 NFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVPLTMLMNMEER 488
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 192 bits (488), Expect = 2e-57
Identities = 84/353 (23%), Positives = 132/353 (37%), Gaps = 49/353 (13%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKR 209
++T GG PG+N IR +V + +V+GI GY G Y + L V+ + R
Sbjct: 7 VLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINR 64
Query: 210 GGTILGTSRGGHDTSK-----IVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKV 264
GGT LG++R + +++++ RGI+ + V+GGDG+ GA + E
Sbjct: 65 GGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFP----- 119
Query: 265 AVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFI 324
G+P TIDNDI D + GF TA+ AI + S I VV++MGRY G +
Sbjct: 120 -CIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSS-HQRISVVEVMGRYCGDL 177
Query: 325 AMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIM 384
+ A I C + + E K H ++ I E
Sbjct: 178 TLAAAI---AGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAIVAITEHMCDVD----- 229
Query: 385 HTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVY 444
++ I G++ + ++ R D +
Sbjct: 230 -------------------ELAHFIEKETGRE------TRATVLGHIQRGGSPVPYDRIL 264
Query: 445 CTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPFYRITERQNRVVITDRMWARL 497
+ + AI +AGY G VG N + + E R W
Sbjct: 265 ASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDIIDAIENMKRPF--KGDWLDC 315
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 189 bits (481), Expect = 2e-56
Identities = 95/357 (26%), Positives = 151/357 (42%), Gaps = 51/357 (14%)
Query: 150 IVTCGGLCPGLNTVIREIVCGLYYMYGVHKVLGIEGGYRGFYARNTIPLTPKIVNGIHKR 209
++T GG PG+N IR +V +Y +V G+ GY G A N L V I R
Sbjct: 6 VLTSGGDSPGMNAAIRSVV--RKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHR 63
Query: 210 GGTILGTSRGGH-----DTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEIRRRGLKV 264
GGTIL T+R K ++ ++ GI + V+GGDG+ +GA + E
Sbjct: 64 GGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFP----- 118
Query: 265 AVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLMGRYSGFI 324
G+P TIDNDIP D + GFDTA+ AI A S V+++MGR++G I
Sbjct: 119 -CVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSH-ERTYVIEVMGRHAGDI 176
Query: 325 AMYATIASRDVDCCLIPESPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIM 384
A+++ +A + LIPE+ + + + +R K H +I++AEG G +
Sbjct: 177 ALWSGLAG-GAETILIPEADYDMNDVIARLKRGHERGK--KHSIIIVAEGVGSGV----- 228
Query: 385 HTMDQQDASGNKLLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVY 444
++I++ G + ++ R A D V
Sbjct: 229 -------------------DFGRQIQEATG------FETRVTVLGHVQRGGSPTAFDRVL 263
Query: 445 CTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPFYRITERQNRVVITDRMW--ARLLS 499
+ L A+ + G G VG N + ++ + RM+ ++ LS
Sbjct: 264 ASRLGARAVELLLEGKGGRCVGIQNNQLVDHDIAEALANKHTI--DQRMYALSKELS 318
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
{Staphylococcus aureus [TaxId: 1280]}
Length = 312
Score = 33.8 bits (76), Expect = 0.044
Identities = 21/149 (14%), Positives = 43/149 (28%), Gaps = 9/149 (6%)
Query: 200 PKIVNGIHKRGG--TILGTSRGGHDTSKIVDSIQDRGINQVYVLGGDGTQKGASAIFEEI 257
P + + K G + T + G T + + + GGDGT + + I
Sbjct: 23 PDALIKLEKAGYETSAYATEKIGDAT-LEAERAMHENYDVLIAAGGDGTL---NEVVNGI 78
Query: 258 RRRGLKVAVAGIPKTIDNDIPIIDKSFGFDTAVEEAQRAISAAHVEAESFENGIGVVKLM 317
+ + + IP ND + + V+ N +
Sbjct: 79 AEKPNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAA 138
Query: 318 GRYSGFIAMYATIASRDVDCCLIPESPFY 346
G G + + + + P + +
Sbjct: 139 G---GQLTQVSYETPSKLKSIVGPFAYYI 164
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 255
Score = 30.4 bits (67), Expect = 0.45
Identities = 9/143 (6%), Positives = 36/143 (25%), Gaps = 16/143 (11%)
Query: 339 LIPE--SPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIMHTMDQQDASGNK 396
++ S + + E G+ I++ +L++E + + +++
Sbjct: 8 IVTRLDSLSENL----AVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNID--- 60
Query: 397 LLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGA 456
+ ++ + + S D+ + ++
Sbjct: 61 -------GVVLFGFTGITEEMLAHWQSSLVLLARDAKGFASVCYDDEGAIKILMQRLYDQ 113
Query: 457 MAGYTGFTVGPVNGRHAYIPFYR 479
+ P + +
Sbjct: 114 GHRNISYLGVPHSDVTTGKRRHE 136
>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 115
Score = 27.9 bits (62), Expect = 1.2
Identities = 7/51 (13%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 252 AIFEEIRRRGLKVAVAGIPKTIDNDIPI--IDKSFGFDTAVEEAQRAISAA 300
+++I+ G ++ V + + + + K + + A +A+ A
Sbjct: 65 GRYKQIKNVGGQMVVCAVSPAVKRLFDMSGLFKIIRVEADEQFALQALGVA 115
>d1i5pa1 b.18.1.3 (A:473-633) delta-Endotoxin, C-terminal domain
{Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId:
29339]}
Length = 161
Score = 28.0 bits (62), Expect = 1.8
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 442 NVYCTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPFY 478
N+Y + IH A YTGFT+ P++
Sbjct: 1 NIYAANENGTMIHLAPEDYTGFTISPIHATQVNNQTR 37
>d2z8la1 b.40.2.2 (A:13-100) Superantigen-like protein SET3
{Staphylococcus aureus [TaxId: 1280]}
Length = 88
Score = 26.7 bits (59), Expect = 2.6
Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 8/61 (13%)
Query: 220 GHDTSKIVDSIQDRGINQVYVLGGD------GTQKGASAIF--EEIRRRGLKVAVAGIPK 271
+ + + ++ + G D G E R G + G+ K
Sbjct: 25 SKGGKHYLIFDKHQKFTRIQIFGKDIERLKTRKNPGLDIFVVKEAENRNGTVFSYGGVTK 84
Query: 272 T 272
Sbjct: 85 K 85
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator
CcpA, C-terminal domain {Bacillus megaterium [TaxId:
1404]}
Length = 275
Score = 28.1 bits (61), Expect = 2.8
Identities = 16/125 (12%), Positives = 40/125 (32%), Gaps = 6/125 (4%)
Query: 339 LIPE--SPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIMHTMDQQDASGNK 396
+IP+ + FY E L IE + +I+ Q+ +++ M + G
Sbjct: 9 IIPDISNIFYAE----LARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGII 64
Query: 397 LLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGA 456
+ + + +++ + + A+ + +L+ + A
Sbjct: 65 FMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIA 124
Query: 457 MAGYT 461
T
Sbjct: 125 FVSGT 129
>d2p3pa1 d.383.1.1 (A:66-262) Hypothetical protein PG1388
{Porphyromonas gingivalis [TaxId: 837]}
Length = 197
Score = 27.2 bits (60), Expect = 4.1
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 6/46 (13%)
Query: 407 QKIRDHFGKKRKMTINLKYI------DPTYMIRAVPSNASDNVYCT 446
+ G +N +I +R +P + S +V C
Sbjct: 41 ASLESSLGGTVTFLLNRNFIRIQTSTVGEVFMRILPFSDSSSVICV 86
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli,
strain k-12 [TaxId: 562]}
Length = 271
Score = 27.4 bits (59), Expect = 4.2
Identities = 19/158 (12%), Positives = 45/158 (28%), Gaps = 11/158 (6%)
Query: 339 LIPE--SPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIMHTMDQQDASGNK 396
++ +PF++ L + +K + G+ ++V+ + + +
Sbjct: 7 VVSTLNNPFFVS----LKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 62
Query: 397 LLQDVGLWISQKIRDHFGKKRKMTINLKYIDPTYMIRAVPSNASDNVYCTLLAHSAIHGA 456
+ + ++ + + V ASDNV +A + A
Sbjct: 63 INPTDSDAVGNAVKMA---NQANIPVITLDRQATKGEVVSHIASDNVLGGKIA--GDYIA 117
Query: 457 MAGYTGFTVGPVNGRHAYIPFYRITERQNRVVITDRMW 494
G V + G E + V +
Sbjct: 118 KKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN 155
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 91
Score = 25.8 bits (57), Expect = 4.4
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 377 QELLSEIMHTMDQQDASGNKLLQDVGLWISQKIR 410
++L + + K L+++ W++ +R
Sbjct: 58 ADMLQQECEALLVDFPEQEKELRELSAWMAGAVR 91
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 282
Score = 27.4 bits (59), Expect = 4.6
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 339 LIPE--SPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIMHTMDQQ 390
L + ++ E + E +EK + G+ +I+ E + M Q+
Sbjct: 6 LATSSEAAYFAE----IIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQK 55
>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal
domain {Moorella thermoacetica [TaxId: 1525]}
Length = 149
Score = 26.6 bits (58), Expect = 5.6
Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 5/101 (4%)
Query: 238 VYVLGGDGTQKGASAIFEEIRRRGLKVAVAGIPKTIDNDIPIIDKS-----FGFDTAVEE 292
Y T+K A A+ + + G +V + + + ND+ G T +
Sbjct: 8 AYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTINND 67
Query: 293 AQRAISAAHVEAESFENGIGVVKLMGRYSGFIAMYATIASR 333
+S + V G Y + R
Sbjct: 68 ILPVVSPLLDDLVGLRPKNKVGLAFGAYGWGGGAQKILEER 108
>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 26.8 bits (58), Expect = 6.0
Identities = 7/59 (11%), Positives = 16/59 (27%), Gaps = 15/59 (25%)
Query: 359 KRLKENGHMVIVIAEGAGQELLSEIMHTMDQQDASGNKLLQDVGLWISQKIRDHFGKKR 417
L G +++ G+ + + G + RD+ +R
Sbjct: 225 NALVSGGFLLLEHGWQQGEAVR---------------QAFILAGYHDVETCRDYGDNER 268
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli
[TaxId: 562]}
Length = 305
Score = 26.7 bits (57), Expect = 7.5
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 341 PESPFYLEGPGGLFEYIEKRLKENGHMVIVIAEGAGQELLSEIMHTMDQQDASG 394
PE P++ +++ +K K+ G VI IA G++ L+ I ++ A G
Sbjct: 11 PEEPWFQT----EWKFADKAGKDLGFEVIKIAVPDGEKTLNAI-DSLAASGAKG 59
>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 224
Score = 26.3 bits (57), Expect = 7.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 353 LFEYIEKRLKENGHMVIVIAEGAGQELL 380
L ++LKE G M++ I G Q+L
Sbjct: 147 LLCKPYEQLKEGGIMILPIGVGRVQKLY 174
>d1v1oa1 b.40.2.2 (A:18-108) Exotoxin 1 (SET1, Superantigen-like
protein 7) {Staphylococcus aureus [TaxId: 1280]}
Length = 91
Score = 25.1 bits (55), Expect = 7.7
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 220 GHDTSKIVDSIQDRGINQVYVLGGDGTQKGASA----IF---EEIRRRGLKVAVAGIPKT 272
++ S +V +Q+++LG D Q +F E I G V G+ K
Sbjct: 31 NYNGSNVVRFNPKDQNHQLFLLGKDKEQYKEGLQGQNVFVVQELIDPNGRLSTVGGVTKK 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.267 0.0384 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,021,441
Number of extensions: 98758
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 22
Length of query: 535
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 445
Effective length of database: 1,171,896
Effective search space: 521493720
Effective search space used: 521493720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.9 bits)