Query 009395
Match_columns 535
No_of_seqs 521 out of 4225
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 12:36:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02441 fa_ox_alpha_mit fatt 100.0 1.4E-94 2.9E-99 797.8 57.4 518 1-528 174-717 (737)
2 TIGR02437 FadB fatty oxidation 100.0 2.1E-92 4.5E-97 779.0 57.4 514 1-527 166-694 (714)
3 TIGR02440 FadJ fatty oxidation 100.0 1.9E-91 4E-96 771.8 56.0 511 1-528 162-680 (699)
4 PRK11730 fadB multifunctional 100.0 1.1E-90 2.3E-95 767.6 56.7 511 1-523 166-691 (715)
5 PRK11154 fadJ multifunctional 100.0 1.5E-90 3.2E-95 766.6 55.4 511 1-528 167-687 (708)
6 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 5.3E-73 1.1E-77 601.2 42.5 385 145-530 3-484 (503)
7 PRK08268 3-hydroxy-acyl-CoA de 100.0 1.1E-70 2.3E-75 585.5 43.3 386 144-530 4-485 (507)
8 COG1250 FadB 3-hydroxyacyl-CoA 100.0 2E-66 4.3E-71 509.2 31.6 280 146-425 2-285 (307)
9 KOG2304 3-hydroxyacyl-CoA dehy 100.0 2.6E-65 5.7E-70 462.1 19.8 280 145-424 9-298 (298)
10 PRK07819 3-hydroxybutyryl-CoA 100.0 7E-61 1.5E-65 477.0 32.8 279 145-423 3-286 (286)
11 PRK08293 3-hydroxybutyryl-CoA 100.0 7.6E-57 1.7E-61 450.2 32.9 279 146-424 2-287 (287)
12 PRK09260 3-hydroxybutyryl-CoA 100.0 2.3E-56 4.9E-61 447.3 34.0 281 147-427 1-284 (288)
13 PRK05808 3-hydroxybutyryl-CoA 100.0 5.5E-56 1.2E-60 443.3 32.4 278 146-423 2-282 (282)
14 PRK06035 3-hydroxyacyl-CoA deh 100.0 1.1E-55 2.4E-60 442.9 33.0 279 146-424 2-291 (291)
15 PLN02545 3-hydroxybutyryl-CoA 100.0 2.4E-55 5.3E-60 441.5 34.3 282 146-427 3-287 (295)
16 PRK07530 3-hydroxybutyryl-CoA 100.0 5.3E-55 1.1E-59 438.4 33.7 281 146-426 3-286 (292)
17 KOG1683 Hydroxyacyl-CoA dehydr 100.0 7.8E-56 1.7E-60 430.7 16.5 356 158-524 1-361 (380)
18 PRK08269 3-hydroxybutyryl-CoA 100.0 4.3E-53 9.3E-58 425.1 31.6 268 158-425 1-284 (314)
19 PRK07066 3-hydroxybutyryl-CoA 100.0 6E-53 1.3E-57 421.9 27.1 277 145-425 5-298 (321)
20 PRK06130 3-hydroxybutyryl-CoA 100.0 1.4E-46 2.9E-51 381.1 31.8 277 146-427 3-286 (311)
21 PRK06129 3-hydroxyacyl-CoA deh 100.0 1.6E-39 3.5E-44 328.2 30.8 264 146-409 1-275 (308)
22 PF02737 3HCDH_N: 3-hydroxyacy 100.0 6.5E-38 1.4E-42 290.6 21.3 180 149-328 1-180 (180)
23 PRK07531 bifunctional 3-hydrox 100.0 7.5E-36 1.6E-40 319.0 27.9 244 146-393 3-254 (495)
24 KOG2305 3-hydroxyacyl-CoA dehy 100.0 7.2E-34 1.6E-38 257.9 15.1 234 147-380 3-244 (313)
25 PRK08268 3-hydroxy-acyl-CoA de 99.9 3.8E-27 8.3E-32 251.5 18.4 165 251-422 337-504 (507)
26 PF00725 3HCDH: 3-hydroxyacyl- 99.9 1.3E-25 2.7E-30 187.3 8.9 94 330-423 1-97 (97)
27 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.9 4E-21 8.6E-26 204.8 26.7 118 293-410 378-498 (503)
28 COG2084 MmsB 3-hydroxyisobutyr 99.8 1.1E-17 2.3E-22 163.5 18.3 186 148-364 1-210 (286)
29 TIGR01505 tartro_sem_red 2-hyd 99.7 2.4E-16 5.1E-21 158.3 17.6 187 149-365 1-209 (291)
30 PRK07417 arogenate dehydrogena 99.7 1.9E-15 4.1E-20 150.7 22.7 154 148-326 1-166 (279)
31 PRK11559 garR tartronate semia 99.7 2.1E-15 4.5E-20 151.9 18.1 188 147-365 2-212 (296)
32 PLN02688 pyrroline-5-carboxyla 99.6 1.6E-14 3.5E-19 143.2 20.9 185 148-362 1-202 (266)
33 KOG0409 Predicted dehydrogenas 99.6 1.4E-14 3E-19 138.9 18.8 189 145-362 33-242 (327)
34 PRK12491 pyrroline-5-carboxyla 99.6 2.7E-14 5.8E-19 141.3 20.9 153 148-326 3-161 (272)
35 PRK11199 tyrA bifunctional cho 99.6 1.8E-14 3.9E-19 149.0 18.3 171 146-357 97-277 (374)
36 PRK07679 pyrroline-5-carboxyla 99.6 4.2E-14 9E-19 141.1 19.1 190 146-362 2-207 (279)
37 PRK15461 NADH-dependent gamma- 99.6 8.3E-14 1.8E-18 140.0 19.7 187 148-362 2-207 (296)
38 PRK11880 pyrroline-5-carboxyla 99.6 2.3E-13 5.1E-18 134.9 21.3 189 147-362 2-203 (267)
39 PRK06545 prephenate dehydrogen 99.5 1.7E-13 3.6E-18 141.4 18.3 166 148-335 1-183 (359)
40 PRK15059 tartronate semialdehy 99.5 2.6E-13 5.6E-18 135.9 18.5 185 149-362 2-205 (292)
41 TIGR01692 HIBADH 3-hydroxyisob 99.5 1.6E-13 3.4E-18 137.6 16.3 181 152-365 1-206 (288)
42 PRK08507 prephenate dehydrogen 99.5 5.6E-13 1.2E-17 132.7 19.2 151 149-327 2-168 (275)
43 COG0287 TyrA Prephenate dehydr 99.5 7E-13 1.5E-17 130.6 19.2 156 147-326 3-170 (279)
44 PRK08655 prephenate dehydrogen 99.5 8E-13 1.7E-17 139.4 19.9 154 148-326 1-162 (437)
45 PF03446 NAD_binding_2: NAD bi 99.5 1.3E-13 2.9E-18 126.1 11.3 145 147-324 1-159 (163)
46 COG0345 ProC Pyrroline-5-carbo 99.5 4.2E-13 9.2E-18 130.2 15.2 190 147-362 1-202 (266)
47 PTZ00142 6-phosphogluconate de 99.5 1E-12 2.2E-17 139.0 18.4 188 148-362 2-219 (470)
48 TIGR00872 gnd_rel 6-phosphoglu 99.5 3.6E-12 7.8E-17 128.2 20.2 189 148-362 1-209 (298)
49 PLN02256 arogenate dehydrogena 99.5 1.5E-12 3.3E-17 130.5 17.1 153 147-326 36-203 (304)
50 PLN02350 phosphogluconate dehy 99.5 3.2E-12 7E-17 135.2 20.1 190 146-362 5-225 (493)
51 TIGR02441 fa_ox_alpha_mit fatt 99.5 1.6E-13 3.4E-18 153.1 10.6 102 309-410 625-733 (737)
52 PRK07502 cyclohexadienyl dehyd 99.5 2.4E-12 5.1E-17 130.3 17.5 155 147-326 6-178 (307)
53 PRK11064 wecC UDP-N-acetyl-D-m 99.5 3.3E-12 7.1E-17 134.1 19.1 198 147-362 3-248 (415)
54 TIGR03026 NDP-sugDHase nucleot 99.5 3.8E-12 8.2E-17 134.0 19.5 206 148-362 1-244 (411)
55 PRK06928 pyrroline-5-carboxyla 99.4 5.9E-12 1.3E-16 125.3 19.1 153 147-324 1-160 (277)
56 PLN02858 fructose-bisphosphate 99.4 3.4E-12 7.4E-17 150.3 18.7 188 147-365 4-217 (1378)
57 PRK12490 6-phosphogluconate de 99.4 1.3E-11 2.9E-16 124.3 20.3 182 149-362 2-210 (299)
58 PF00725 3HCDH: 3-hydroxyacyl- 99.4 2.1E-13 4.6E-18 113.5 5.1 68 461-529 2-69 (97)
59 PRK09599 6-phosphogluconate de 99.4 2E-11 4.4E-16 123.1 20.1 183 148-362 1-211 (301)
60 PRK07680 late competence prote 99.4 2.8E-11 6E-16 120.4 19.8 151 149-326 2-158 (273)
61 PRK12557 H(2)-dependent methyl 99.4 3.5E-11 7.7E-16 122.4 20.7 205 159-386 32-260 (342)
62 PLN02858 fructose-bisphosphate 99.4 7.6E-12 1.6E-16 147.4 18.2 191 146-365 323-537 (1378)
63 PRK05479 ketol-acid reductoiso 99.4 1.6E-11 3.4E-16 123.3 17.5 186 147-358 17-225 (330)
64 KOG2304 3-hydroxyacyl-CoA dehy 99.4 7E-13 1.5E-17 121.6 6.5 73 459-532 199-271 (298)
65 TIGR00465 ilvC ketol-acid redu 99.4 5.7E-11 1.2E-15 119.5 20.1 202 148-380 4-231 (314)
66 PRK00094 gpsA NAD(P)H-dependen 99.4 3.8E-11 8.1E-16 122.6 18.9 197 147-360 1-238 (325)
67 PRK08818 prephenate dehydrogen 99.3 1.5E-11 3.4E-16 125.7 15.4 138 148-326 5-154 (370)
68 PRK06476 pyrroline-5-carboxyla 99.3 6.2E-11 1.3E-15 116.9 19.0 181 149-362 2-194 (258)
69 PRK15057 UDP-glucose 6-dehydro 99.3 1.5E-11 3.2E-16 127.7 15.0 198 148-362 1-233 (388)
70 KOG1680 Enoyl-CoA hydratase [L 99.3 2.1E-12 4.6E-17 122.3 7.9 98 1-134 191-288 (290)
71 PRK11154 fadJ multifunctional 99.3 2.2E-12 4.8E-17 143.9 9.4 88 327-421 613-706 (708)
72 PTZ00431 pyrroline carboxylate 99.3 6E-11 1.3E-15 117.0 18.4 145 148-324 4-153 (260)
73 PLN02600 enoyl-CoA hydratase 99.3 3.6E-12 7.8E-17 125.0 9.6 97 1-133 152-248 (251)
74 PRK08150 enoyl-CoA hydratase; 99.3 4.2E-12 9E-17 124.8 9.8 98 1-134 156-253 (255)
75 TIGR00873 gnd 6-phosphoglucona 99.3 3.1E-11 6.8E-16 127.7 17.1 190 149-362 1-216 (467)
76 PRK07634 pyrroline-5-carboxyla 99.3 1.2E-10 2.7E-15 113.9 20.1 152 147-324 4-162 (245)
77 TIGR02440 FadJ fatty oxidation 99.3 2.8E-12 6.1E-17 142.8 9.5 84 327-410 606-695 (699)
78 PRK12478 enoyl-CoA hydratase; 99.3 4E-12 8.6E-17 127.5 8.5 98 1-134 173-279 (298)
79 PRK05862 enoyl-CoA hydratase; 99.3 5.3E-12 1.1E-16 124.3 9.2 97 1-133 158-254 (257)
80 PLN02888 enoyl-CoA hydratase 99.3 8.1E-12 1.8E-16 123.4 9.7 99 1-135 163-263 (265)
81 TIGR02280 PaaB1 phenylacetate 99.3 7.7E-12 1.7E-16 123.1 9.5 97 1-133 157-253 (256)
82 PRK07658 enoyl-CoA hydratase; 99.3 9.3E-12 2E-16 122.7 9.9 97 1-133 158-254 (257)
83 PRK05980 enoyl-CoA hydratase; 99.3 7.3E-12 1.6E-16 123.6 9.1 96 1-132 164-259 (260)
84 PRK08139 enoyl-CoA hydratase; 99.3 8.5E-12 1.8E-16 123.4 9.4 97 1-133 167-263 (266)
85 cd05297 GH4_alpha_glucosidase_ 99.3 8.2E-13 1.8E-17 138.8 2.3 158 148-321 1-184 (423)
86 PRK08258 enoyl-CoA hydratase; 99.3 8.7E-12 1.9E-16 124.1 9.5 97 1-133 178-274 (277)
87 PRK08138 enoyl-CoA hydratase; 99.3 1.1E-11 2.4E-16 122.3 10.1 97 1-133 162-258 (261)
88 PRK07938 enoyl-CoA hydratase; 99.3 6.5E-12 1.4E-16 123.0 8.1 95 1-131 155-249 (249)
89 PRK07799 enoyl-CoA hydratase; 99.3 1.3E-11 2.8E-16 122.0 9.7 97 1-133 164-260 (263)
90 PRK08140 enoyl-CoA hydratase; 99.3 1.5E-11 3.3E-16 121.5 9.6 96 1-132 163-258 (262)
91 PRK05809 3-hydroxybutyryl-CoA 99.3 1.6E-11 3.4E-16 121.3 9.5 97 1-133 161-257 (260)
92 PRK06495 enoyl-CoA hydratase; 99.3 1.6E-11 3.5E-16 120.8 9.5 97 1-133 158-254 (257)
93 PRK09076 enoyl-CoA hydratase; 99.3 1.9E-11 4.1E-16 120.5 9.8 97 1-133 159-255 (258)
94 PRK08252 enoyl-CoA hydratase; 99.3 1.9E-11 4E-16 120.2 9.7 97 1-133 155-251 (254)
95 PRK06127 enoyl-CoA hydratase; 99.3 1.9E-11 4E-16 121.2 9.7 97 1-133 170-266 (269)
96 PRK06563 enoyl-CoA hydratase; 99.3 1.7E-11 3.7E-16 120.6 9.3 97 1-133 156-252 (255)
97 PRK09674 enoyl-CoA hydratase-i 99.3 2.1E-11 4.5E-16 119.9 9.8 97 1-133 156-252 (255)
98 PRK06143 enoyl-CoA hydratase; 99.2 1.7E-11 3.7E-16 120.5 9.0 94 1-130 163-256 (256)
99 PRK07468 enoyl-CoA hydratase; 99.2 2.1E-11 4.5E-16 120.4 9.4 97 1-133 163-259 (262)
100 PRK05981 enoyl-CoA hydratase; 99.2 2.2E-11 4.9E-16 120.5 9.6 97 1-133 167-263 (266)
101 PRK14806 bifunctional cyclohex 99.2 1.8E-10 3.9E-15 130.4 18.2 156 147-326 3-176 (735)
102 COG0677 WecC UDP-N-acetyl-D-ma 99.2 6.3E-10 1.4E-14 111.1 19.6 199 148-362 10-251 (436)
103 PRK15182 Vi polysaccharide bio 99.2 1.5E-10 3.2E-15 121.7 16.0 201 148-362 7-244 (425)
104 PRK09245 enoyl-CoA hydratase; 99.2 2.7E-11 5.8E-16 120.0 9.7 97 1-133 167-263 (266)
105 PRK05995 enoyl-CoA hydratase; 99.2 2.5E-11 5.5E-16 119.9 9.4 97 1-133 162-259 (262)
106 PRK07657 enoyl-CoA hydratase; 99.2 2.8E-11 6.1E-16 119.4 9.7 97 1-133 161-257 (260)
107 TIGR01915 npdG NADPH-dependent 99.2 3.3E-10 7.1E-15 108.9 16.7 163 148-327 1-189 (219)
108 PLN02664 enoyl-CoA hydratase/d 99.2 2.8E-11 6.1E-16 120.3 9.6 97 1-133 175-272 (275)
109 PRK06494 enoyl-CoA hydratase; 99.2 2.7E-11 5.8E-16 119.4 9.1 96 1-132 158-255 (259)
110 PRK06210 enoyl-CoA hydratase; 99.2 2.6E-11 5.7E-16 120.5 8.9 98 1-133 172-269 (272)
111 PLN03214 probable enoyl-CoA hy 99.2 2.2E-11 4.7E-16 121.1 8.1 99 1-135 172-270 (278)
112 PRK06142 enoyl-CoA hydratase; 99.2 3E-11 6.5E-16 120.0 9.1 96 1-132 173-269 (272)
113 PRK07511 enoyl-CoA hydratase; 99.2 3.3E-11 7.1E-16 119.0 9.1 96 1-132 162-257 (260)
114 PF02153 PDH: Prephenate dehyd 99.2 3.1E-10 6.7E-15 111.7 15.8 141 162-326 1-157 (258)
115 PRK14618 NAD(P)H-dependent gly 99.2 2E-10 4.3E-15 117.4 14.9 166 147-330 4-181 (328)
116 PRK08184 benzoyl-CoA-dihydrodi 99.2 1.7E-11 3.7E-16 131.6 7.1 97 2-134 446-546 (550)
117 COG1004 Ugd Predicted UDP-gluc 99.2 7.1E-10 1.5E-14 111.3 17.7 202 148-361 1-241 (414)
118 TIGR03222 benzo_boxC benzoyl-C 99.2 2E-11 4.2E-16 130.7 7.0 97 1-133 441-541 (546)
119 PRK03580 carnitinyl-CoA dehydr 99.2 4.7E-11 1E-15 117.8 8.9 97 1-133 158-258 (261)
120 PLN02712 arogenate dehydrogena 99.2 2.7E-10 5.7E-15 125.8 15.7 154 146-326 368-536 (667)
121 PRK06688 enoyl-CoA hydratase; 99.2 5.6E-11 1.2E-15 117.3 9.4 96 1-132 160-255 (259)
122 PRK07659 enoyl-CoA hydratase; 99.2 4.9E-11 1.1E-15 117.7 8.6 96 1-133 162-257 (260)
123 PRK08229 2-dehydropantoate 2-r 99.2 7.4E-10 1.6E-14 113.9 17.0 164 147-330 2-180 (341)
124 COG0240 GpsA Glycerol-3-phosph 99.2 1.2E-10 2.7E-15 115.2 10.5 164 148-330 2-181 (329)
125 PRK08259 enoyl-CoA hydratase; 99.2 7.8E-11 1.7E-15 115.7 8.9 93 1-130 157-249 (254)
126 TIGR01929 menB naphthoate synt 99.2 5.4E-11 1.2E-15 117.2 7.7 96 1-133 161-256 (259)
127 PRK05674 gamma-carboxygeranoyl 99.2 7E-11 1.5E-15 116.8 8.4 97 1-133 164-261 (265)
128 PRK07396 dihydroxynaphthoic ac 99.2 9.6E-11 2.1E-15 116.3 9.2 97 1-134 171-267 (273)
129 PRK07260 enoyl-CoA hydratase; 99.2 9.4E-11 2E-15 115.3 9.0 94 1-130 162-255 (255)
130 PTZ00082 L-lactate dehydrogena 99.2 9.7E-11 2.1E-15 118.6 9.2 126 147-284 6-153 (321)
131 PRK05864 enoyl-CoA hydratase; 99.1 1.2E-10 2.6E-15 115.8 9.3 97 1-133 174-272 (276)
132 PRK11423 methylmalonyl-CoA dec 99.1 1.2E-10 2.5E-15 115.0 8.9 97 1-133 160-258 (261)
133 PRK09120 p-hydroxycinnamoyl Co 99.1 1.3E-10 2.9E-15 115.4 9.1 94 1-130 168-264 (275)
134 TIGR01724 hmd_rel H2-forming N 99.1 8.7E-09 1.9E-13 101.3 21.3 148 159-326 32-193 (341)
135 PRK11730 fadB multifunctional 99.1 1.2E-10 2.6E-15 130.1 9.5 85 329-421 624-714 (715)
136 PRK14619 NAD(P)H-dependent gly 99.1 1.2E-09 2.6E-14 110.5 15.9 139 148-330 5-158 (308)
137 PLN02921 naphthoate synthase 99.1 1.4E-10 3.1E-15 117.3 9.0 97 1-134 225-321 (327)
138 COG1250 FadB 3-hydroxyacyl-CoA 99.1 7.6E-11 1.6E-15 116.8 6.6 70 459-529 185-254 (307)
139 PLN02712 arogenate dehydrogena 99.1 1.8E-09 4E-14 119.2 17.7 154 146-326 51-219 (667)
140 TIGR03210 badI 2-ketocyclohexa 99.1 1.9E-10 4E-15 113.2 8.5 96 1-133 158-253 (256)
141 cd01339 LDH-like_MDH L-lactate 99.1 2E-10 4.4E-15 115.7 8.8 122 150-283 1-139 (300)
142 TIGR02437 FadB fatty oxidation 99.1 2.1E-10 4.6E-15 127.9 9.4 81 329-410 624-710 (714)
143 PRK08321 naphthoate synthase; 99.1 2.5E-10 5.4E-15 114.9 8.9 96 1-133 200-295 (302)
144 PRK06144 enoyl-CoA hydratase; 99.1 2.9E-10 6.3E-15 112.2 8.7 93 1-133 167-259 (262)
145 PF01210 NAD_Gly3P_dh_N: NAD-d 99.1 1.6E-10 3.5E-15 105.0 6.4 105 149-265 1-106 (157)
146 PRK05808 3-hydroxybutyryl-CoA 99.1 1.8E-10 4E-15 115.1 7.4 72 458-530 184-255 (282)
147 PF03721 UDPG_MGDP_dh_N: UDP-g 99.1 5E-10 1.1E-14 104.3 9.8 108 148-268 1-125 (185)
148 PTZ00117 malate dehydrogenase; 99.1 4.1E-10 8.9E-15 114.1 9.3 125 148-284 6-147 (319)
149 PRK07819 3-hydroxybutyryl-CoA 99.1 2.7E-10 5.8E-15 113.8 7.7 70 460-530 190-259 (286)
150 PRK08260 enoyl-CoA hydratase; 99.1 4.4E-10 9.6E-15 112.9 9.2 100 1-135 177-277 (296)
151 PRK06223 malate dehydrogenase; 99.1 6E-10 1.3E-14 112.8 10.0 125 147-283 2-143 (307)
152 PRK08293 3-hydroxybutyryl-CoA 99.1 3E-10 6.5E-15 113.8 7.6 71 459-530 188-258 (287)
153 PRK06023 enoyl-CoA hydratase; 99.0 4.3E-10 9.2E-15 110.4 8.1 91 1-128 161-251 (251)
154 PRK06072 enoyl-CoA hydratase; 99.0 7.3E-10 1.6E-14 108.5 9.4 94 1-133 152-245 (248)
155 PRK12439 NAD(P)H-dependent gly 99.0 6.5E-09 1.4E-13 106.6 16.4 176 145-334 5-191 (341)
156 PRK07509 enoyl-CoA hydratase; 99.0 7.2E-10 1.6E-14 109.6 8.8 94 1-132 166-259 (262)
157 PRK05870 enoyl-CoA hydratase; 99.0 4.3E-10 9.4E-15 110.2 7.1 90 1-128 159-249 (249)
158 PF03807 F420_oxidored: NADP o 99.0 7.7E-10 1.7E-14 91.7 7.5 91 149-263 1-95 (96)
159 PF00378 ECH: Enoyl-CoA hydrat 99.0 4.1E-10 9E-15 110.2 6.7 92 1-128 154-245 (245)
160 TIGR03189 dienoyl_CoA_hyt cycl 99.0 1.1E-09 2.5E-14 107.2 9.7 95 1-133 152-248 (251)
161 PRK09287 6-phosphogluconate de 99.0 7.3E-09 1.6E-13 109.4 16.2 177 158-362 1-208 (459)
162 PRK06035 3-hydroxyacyl-CoA deh 99.0 4.5E-10 9.8E-15 112.8 6.5 70 460-530 189-258 (291)
163 PRK07327 enoyl-CoA hydratase; 99.0 9.5E-10 2.1E-14 109.0 8.5 93 1-133 170-265 (268)
164 COG2085 Predicted dinucleotide 99.0 1.5E-08 3.2E-13 94.0 15.7 153 147-327 1-180 (211)
165 PLN02353 probable UDP-glucose 99.0 1.8E-08 3.9E-13 106.9 18.4 204 147-362 1-252 (473)
166 PRK09260 3-hydroxybutyryl-CoA 99.0 8.9E-10 1.9E-14 110.5 7.3 68 460-528 185-252 (288)
167 PRK05617 3-hydroxyisobutyryl-C 99.0 7.3E-10 1.6E-14 113.2 6.6 130 1-132 163-322 (342)
168 PRK07112 polyketide biosynthes 99.0 1.6E-09 3.4E-14 106.6 8.7 94 1-133 159-252 (255)
169 PRK07827 enoyl-CoA hydratase; 99.0 1.7E-09 3.8E-14 106.7 8.6 94 1-132 164-257 (260)
170 PRK07854 enoyl-CoA hydratase; 98.9 2.5E-09 5.3E-14 104.4 9.1 91 1-133 150-240 (243)
171 PLN02545 3-hydroxybutyryl-CoA 98.9 1.6E-09 3.4E-14 109.1 7.7 71 459-530 186-256 (295)
172 PF10727 Rossmann-like: Rossma 98.9 5E-09 1.1E-13 90.8 9.0 115 147-285 10-127 (127)
173 PRK07110 polyketide biosynthes 98.9 5E-09 1.1E-13 102.7 8.6 90 1-126 158-247 (249)
174 PRK07530 3-hydroxybutyryl-CoA 98.9 3.2E-09 7E-14 106.7 7.4 70 460-530 187-256 (292)
175 PLN02874 3-hydroxyisobutyryl-C 98.8 3.6E-09 7.9E-14 109.5 6.5 131 1-132 168-335 (379)
176 PRK06190 enoyl-CoA hydratase; 98.8 8.7E-09 1.9E-13 101.3 8.8 95 1-131 158-255 (258)
177 COG0447 MenB Dihydroxynaphthoi 98.8 2.1E-09 4.7E-14 97.9 3.9 95 2-134 181-276 (282)
178 COG1023 Gnd Predicted 6-phosph 98.8 2.3E-07 5E-12 86.6 17.2 189 148-362 1-210 (300)
179 TIGR03376 glycerol3P_DH glycer 98.8 6.8E-08 1.5E-12 98.4 15.0 165 149-330 1-197 (342)
180 PTZ00345 glycerol-3-phosphate 98.8 3E-08 6.5E-13 101.7 12.1 173 148-331 12-207 (365)
181 PRK14620 NAD(P)H-dependent gly 98.8 5.1E-08 1.1E-12 99.6 13.9 171 148-337 1-189 (326)
182 COG1024 CaiD Enoyl-CoA hydrata 98.8 1.6E-08 3.5E-13 99.7 9.1 93 1-131 162-255 (257)
183 PRK06249 2-dehydropantoate 2-r 98.8 2.4E-07 5.1E-12 94.1 17.6 174 145-334 3-193 (313)
184 PRK06444 prephenate dehydrogen 98.8 1.4E-07 3.1E-12 88.3 14.4 114 148-326 1-120 (197)
185 TIGR01763 MalateDH_bact malate 98.8 2.2E-08 4.9E-13 100.8 9.7 123 148-283 2-142 (305)
186 TIGR00112 proC pyrroline-5-car 98.8 2.3E-07 5.1E-12 90.6 16.5 166 171-362 10-185 (245)
187 PRK06522 2-dehydropantoate 2-r 98.8 2.1E-07 4.5E-12 94.1 15.7 163 148-327 1-174 (304)
188 PRK07066 3-hydroxybutyryl-CoA 98.7 2.1E-08 4.5E-13 101.1 7.2 67 459-526 187-257 (321)
189 PRK12921 2-dehydropantoate 2-r 98.7 1.7E-07 3.8E-12 94.7 13.9 165 148-328 1-178 (305)
190 cd00650 LDH_MDH_like NAD-depen 98.7 4.8E-08 1E-12 96.6 8.3 96 150-259 1-116 (263)
191 KOG1679 Enoyl-CoA hydratase [L 98.7 2E-08 4.3E-13 91.5 5.0 98 1-134 188-289 (291)
192 COG0362 Gnd 6-phosphogluconate 98.6 2.7E-06 5.8E-11 85.2 19.0 193 148-364 4-222 (473)
193 KOG1682 Enoyl-CoA isomerase [L 98.6 5.7E-08 1.2E-12 87.8 5.3 96 1-132 188-283 (287)
194 PF00056 Ldh_1_N: lactate/mala 98.6 4E-07 8.7E-12 81.0 10.4 101 148-262 1-118 (141)
195 PRK12480 D-lactate dehydrogena 98.5 2.8E-07 6E-12 93.8 9.4 100 148-275 147-249 (330)
196 KOG3124 Pyrroline-5-carboxylat 98.5 5.9E-07 1.3E-11 85.1 10.6 150 148-321 1-155 (267)
197 COG4007 Predicted dehydrogenas 98.5 8.3E-06 1.8E-10 77.0 17.7 148 159-326 33-194 (340)
198 PRK08290 enoyl-CoA hydratase; 98.5 1.5E-07 3.3E-12 94.1 6.6 81 1-117 180-262 (288)
199 cd05291 HicDH_like L-2-hydroxy 98.4 7.3E-07 1.6E-11 90.1 8.8 98 148-259 1-114 (306)
200 PRK06213 enoyl-CoA hydratase; 98.4 2E-07 4.3E-12 90.2 4.4 73 1-109 156-228 (229)
201 TIGR02354 thiF_fam2 thiamine b 98.4 6.3E-07 1.4E-11 84.5 7.6 104 148-259 22-142 (200)
202 PRK08269 3-hydroxybutyryl-CoA 98.4 4.1E-07 8.9E-12 92.0 6.8 70 460-530 183-255 (314)
203 PRK08788 enoyl-CoA hydratase; 98.4 9E-07 2E-11 88.1 9.0 90 1-127 185-275 (287)
204 cd05293 LDH_1 A subgroup of L- 98.4 1.3E-06 2.9E-11 88.1 10.0 96 148-256 4-115 (312)
205 PLN02157 3-hydroxyisobutyryl-C 98.4 5.9E-07 1.3E-11 93.2 6.4 88 1-126 196-283 (401)
206 PRK05708 2-dehydropantoate 2-r 98.4 5.5E-06 1.2E-10 83.7 13.2 174 148-338 3-187 (305)
207 PLN02602 lactate dehydrogenase 98.3 1.9E-06 4.1E-11 88.1 9.1 96 148-256 38-149 (350)
208 PRK08272 enoyl-CoA hydratase; 98.3 9.1E-07 2E-11 89.2 6.4 42 1-42 188-229 (302)
209 PRK13403 ketol-acid reductoiso 98.3 2.3E-06 4.9E-11 85.1 8.9 145 147-321 16-173 (335)
210 cd01065 NAD_bind_Shikimate_DH 98.3 1.6E-06 3.5E-11 78.3 7.2 120 147-286 19-141 (155)
211 PRK06130 3-hydroxybutyryl-CoA 98.3 1.4E-06 3E-11 88.5 7.4 68 460-528 184-254 (311)
212 cd05292 LDH_2 A subgroup of L- 98.3 3.7E-06 7.9E-11 85.0 9.8 97 148-258 1-113 (308)
213 PF07991 IlvN: Acetohydroxy ac 98.2 9.2E-06 2E-10 72.5 10.4 93 148-267 5-99 (165)
214 COG1893 ApbA Ketopantoate redu 98.2 1.6E-05 3.5E-10 80.1 13.5 166 148-327 1-176 (307)
215 PRK00066 ldh L-lactate dehydro 98.2 4.3E-06 9.3E-11 84.6 9.4 95 148-256 7-117 (315)
216 PRK13243 glyoxylate reductase; 98.2 2.2E-06 4.9E-11 87.4 7.0 101 148-274 151-254 (333)
217 PRK15076 alpha-galactosidase; 98.2 4.9E-06 1.1E-10 87.7 9.5 75 148-234 2-83 (431)
218 PRK07574 formate dehydrogenase 98.2 1.5E-05 3.3E-10 82.4 12.8 103 148-274 193-298 (385)
219 cd00300 LDH_like L-lactate deh 98.2 4E-06 8.7E-11 84.4 8.3 96 150-259 1-112 (300)
220 COG0039 Mdh Malate/lactate deh 98.2 3.9E-06 8.5E-11 83.5 7.9 97 148-256 1-113 (313)
221 PRK15469 ghrA bifunctional gly 98.2 1.2E-05 2.6E-10 81.2 11.2 102 148-275 137-241 (312)
222 PLN03139 formate dehydrogenase 98.2 2.3E-05 5E-10 81.0 13.3 103 148-274 200-305 (386)
223 PRK06436 glycerate dehydrogena 98.2 1.1E-05 2.4E-10 81.1 10.6 134 148-310 123-267 (303)
224 KOG2380 Prephenate dehydrogena 98.2 5.5E-05 1.2E-09 74.3 14.6 153 147-326 52-219 (480)
225 cd05290 LDH_3 A subgroup of L- 98.1 7.8E-06 1.7E-10 82.3 8.9 98 149-259 1-116 (307)
226 PRK08605 D-lactate dehydrogena 98.1 6.5E-06 1.4E-10 84.1 7.9 99 148-274 147-250 (332)
227 KOG1681 Enoyl-CoA isomerase [L 98.1 5.2E-06 1.1E-10 76.8 6.2 95 2-132 192-287 (292)
228 KOG1683 Hydroxyacyl-CoA dehydr 98.1 1E-06 2.3E-11 87.5 1.8 76 330-410 294-375 (380)
229 PF02558 ApbA: Ketopantoate re 98.1 3E-05 6.4E-10 69.8 10.5 115 150-282 1-121 (151)
230 cd05294 LDH-like_MDH_nadp A la 98.0 1.3E-05 2.9E-10 81.0 8.4 123 148-283 1-145 (309)
231 KOG2711 Glycerol-3-phosphate d 98.0 3E-05 6.5E-10 76.5 10.0 181 144-330 18-219 (372)
232 PRK05869 enoyl-CoA hydratase; 98.0 5.5E-06 1.2E-10 79.7 4.8 42 1-42 163-204 (222)
233 COG0111 SerA Phosphoglycerate 98.0 5.7E-05 1.2E-09 76.5 11.3 101 148-275 143-248 (324)
234 PF02826 2-Hacid_dh_C: D-isome 98.0 9.1E-06 2E-10 75.4 4.8 103 148-275 37-142 (178)
235 TIGR01327 PGDH D-3-phosphoglyc 97.9 6.2E-05 1.4E-09 81.7 11.9 103 148-275 139-244 (525)
236 PRK05442 malate dehydrogenase; 97.9 3.4E-05 7.3E-10 78.3 8.1 103 147-262 4-130 (326)
237 PLN02928 oxidoreductase family 97.9 9.8E-05 2.1E-09 75.8 11.5 115 148-275 160-277 (347)
238 PRK13581 D-3-phosphoglycerate 97.9 9.5E-05 2.1E-09 80.2 11.6 129 148-302 141-280 (526)
239 PLN00112 malate dehydrogenase 97.9 0.00013 2.9E-09 76.4 12.0 102 147-262 100-226 (444)
240 TIGR01759 MalateDH-SF1 malate 97.8 6E-05 1.3E-09 76.4 8.8 103 147-262 3-129 (323)
241 KOG0016 Enoyl-CoA hydratase/is 97.8 3.4E-05 7.4E-10 73.2 6.4 93 1-129 171-263 (266)
242 TIGR02853 spore_dpaA dipicolin 97.8 5.7E-05 1.2E-09 75.5 8.3 91 148-265 152-243 (287)
243 PRK05225 ketol-acid reductoiso 97.8 0.00025 5.5E-09 73.5 12.9 185 148-359 37-251 (487)
244 TIGR01772 MDH_euk_gproteo mala 97.8 4.5E-05 9.7E-10 76.9 7.1 92 149-259 1-113 (312)
245 PLN02988 3-hydroxyisobutyryl-C 97.8 0.00012 2.6E-09 75.8 10.4 132 1-135 168-337 (381)
246 KOG1495 Lactate dehydrogenase 97.8 0.00011 2.3E-09 70.2 8.7 101 146-260 19-135 (332)
247 KOG2653 6-phosphogluconate deh 97.8 0.00074 1.6E-08 66.9 14.6 194 146-363 5-225 (487)
248 PRK06129 3-hydroxyacyl-CoA deh 97.8 6.1E-05 1.3E-09 76.3 7.4 71 460-531 187-263 (308)
249 PRK14194 bifunctional 5,10-met 97.8 4.8E-05 1E-09 75.5 6.4 71 148-262 160-231 (301)
250 TIGR01757 Malate-DH_plant mala 97.7 0.00028 6E-09 72.9 12.0 102 147-262 44-170 (387)
251 cd01338 MDH_choloroplast_like 97.7 5E-05 1.1E-09 77.0 6.1 100 148-262 3-128 (322)
252 PRK08410 2-hydroxyacid dehydro 97.7 0.00026 5.7E-09 71.6 10.8 99 148-275 146-247 (311)
253 cd01337 MDH_glyoxysomal_mitoch 97.7 0.00019 4.2E-09 72.2 9.6 96 148-262 1-117 (310)
254 PF00670 AdoHcyase_NAD: S-aden 97.7 0.0002 4.2E-09 64.4 8.5 98 148-273 24-124 (162)
255 PRK13304 L-aspartate dehydroge 97.7 0.0003 6.5E-09 69.6 10.4 85 148-258 2-90 (265)
256 PRK15409 bifunctional glyoxyla 97.7 0.00053 1.1E-08 69.7 12.3 101 148-275 146-251 (323)
257 TIGR01771 L-LDH-NAD L-lactate 97.6 8E-05 1.7E-09 74.9 6.2 94 152-259 1-110 (299)
258 PRK08306 dipicolinate synthase 97.6 0.00021 4.6E-09 71.8 9.3 90 148-264 153-243 (296)
259 PLN02267 enoyl-CoA hydratase/i 97.6 5.6E-05 1.2E-09 73.6 4.8 42 1-42 160-202 (239)
260 PRK00257 erythronate-4-phospha 97.6 7E-05 1.5E-09 77.4 5.7 98 148-274 117-221 (381)
261 cd01487 E1_ThiF_like E1_ThiF_l 97.6 0.00013 2.7E-09 67.4 6.8 98 149-251 1-112 (174)
262 PLN00106 malate dehydrogenase 97.6 7.7E-05 1.7E-09 75.5 5.7 91 148-256 19-130 (323)
263 PF01488 Shikimate_DH: Shikima 97.6 0.00014 3E-09 64.2 6.3 74 147-238 12-87 (135)
264 PTZ00325 malate dehydrogenase; 97.6 0.00014 3E-09 73.6 6.8 35 145-179 6-43 (321)
265 TIGR00745 apbA_panE 2-dehydrop 97.6 0.0023 5E-08 64.1 15.4 157 158-330 2-170 (293)
266 PRK13302 putative L-aspartate 97.6 0.00044 9.6E-09 68.5 10.0 79 146-248 5-87 (271)
267 PRK11790 D-3-phosphoglycerate 97.5 0.00016 3.6E-09 75.8 7.1 99 148-275 152-254 (409)
268 cd01075 NAD_bind_Leu_Phe_Val_D 97.5 0.0012 2.5E-08 62.4 12.0 39 148-186 29-67 (200)
269 cd00704 MDH Malate dehydrogena 97.5 8.5E-05 1.8E-09 75.4 4.4 100 149-262 2-126 (323)
270 PRK06487 glycerate dehydrogena 97.5 0.00065 1.4E-08 69.0 10.7 96 148-275 149-248 (317)
271 PRK06932 glycerate dehydrogena 97.5 0.0006 1.3E-08 69.1 10.4 97 148-275 148-248 (314)
272 PRK06141 ornithine cyclodeamin 97.5 0.00036 7.8E-09 70.8 8.7 93 147-263 125-220 (314)
273 TIGR01758 MDH_euk_cyt malate d 97.4 0.00029 6.3E-09 71.6 7.1 100 149-262 1-125 (324)
274 PF02056 Glyco_hydro_4: Family 97.4 0.0017 3.7E-08 59.9 10.9 74 149-234 1-81 (183)
275 PRK15438 erythronate-4-phospha 97.4 0.00022 4.8E-09 73.5 5.5 96 148-274 117-221 (378)
276 PLN02851 3-hydroxyisobutyryl-C 97.4 0.00099 2.2E-08 69.4 10.0 132 1-135 201-370 (407)
277 PRK14188 bifunctional 5,10-met 97.4 0.00037 8E-09 69.4 6.5 71 148-263 159-231 (296)
278 cd05197 GH4_glycoside_hydrolas 97.3 0.0019 4.1E-08 68.1 12.0 122 148-283 1-165 (425)
279 cd00401 AdoHcyase S-adenosyl-L 97.3 0.0012 2.6E-08 68.9 10.2 86 148-262 203-289 (413)
280 cd05298 GH4_GlvA_pagL_like Gly 97.3 0.0023 5E-08 67.5 12.2 75 148-234 1-82 (437)
281 cd05296 GH4_P_beta_glucosidase 97.3 0.0015 3.2E-08 68.7 10.5 75 148-234 1-83 (419)
282 cd05213 NAD_bind_Glutamyl_tRNA 97.3 0.00059 1.3E-08 69.2 7.3 94 147-262 178-273 (311)
283 COG0569 TrkA K+ transport syst 97.3 0.0021 4.4E-08 62.0 10.6 94 148-262 1-101 (225)
284 TIGR00507 aroE shikimate 5-deh 97.3 0.0005 1.1E-08 68.2 6.6 41 147-187 117-157 (270)
285 PRK11861 bifunctional prephena 97.3 0.0016 3.5E-08 73.0 11.2 95 230-326 1-110 (673)
286 TIGR02371 ala_DH_arch alanine 97.3 0.0011 2.3E-08 67.7 8.9 93 147-263 128-223 (325)
287 PRK08644 thiamine biosynthesis 97.3 0.00053 1.2E-08 65.3 6.2 32 148-179 29-61 (212)
288 COG1748 LYS9 Saccharopine dehy 97.2 0.00048 1E-08 70.8 6.2 75 147-239 1-81 (389)
289 KOG2666 UDP-glucose/GDP-mannos 97.2 0.0039 8.5E-08 61.0 11.9 203 147-361 1-251 (481)
290 PLN02306 hydroxypyruvate reduc 97.2 0.00085 1.8E-08 69.7 7.8 115 148-275 166-287 (386)
291 COG1052 LdhA Lactate dehydroge 97.2 0.00082 1.8E-08 68.1 7.5 101 147-274 146-250 (324)
292 PRK12549 shikimate 5-dehydroge 97.2 0.0011 2.3E-08 66.3 8.0 74 148-237 128-203 (284)
293 PRK04148 hypothetical protein; 97.2 0.00094 2E-08 58.2 6.5 94 148-262 18-111 (134)
294 COG0059 IlvC Ketol-acid reduct 97.2 0.0048 1E-07 60.4 11.5 146 147-320 18-175 (338)
295 TIGR03222 benzo_boxC benzoyl-C 97.2 0.00027 5.8E-09 76.4 3.3 43 1-43 188-230 (546)
296 PRK05086 malate dehydrogenase; 97.2 0.0012 2.5E-08 66.9 7.7 94 148-259 1-115 (312)
297 PRK05476 S-adenosyl-L-homocyst 97.1 0.0015 3.2E-08 68.5 8.6 86 148-263 213-300 (425)
298 PF01113 DapB_N: Dihydrodipico 97.1 0.0018 4E-08 56.2 7.6 103 148-271 1-107 (124)
299 PRK14179 bifunctional 5,10-met 97.1 0.00086 1.9E-08 66.2 6.0 70 148-262 159-230 (284)
300 TIGR00936 ahcY adenosylhomocys 97.1 0.002 4.4E-08 67.0 9.1 98 147-273 195-296 (406)
301 TIGR03200 dearomat_oah 6-oxocy 97.1 0.00092 2E-08 67.8 6.2 42 1-42 188-241 (360)
302 KOG0069 Glyoxylate/hydroxypyru 97.1 0.0018 4E-08 65.1 8.0 105 146-274 161-267 (336)
303 PRK07340 ornithine cyclodeamin 97.1 0.002 4.4E-08 65.0 8.5 91 147-263 125-218 (304)
304 PRK08184 benzoyl-CoA-dihydrodi 97.0 0.00035 7.6E-09 75.7 3.0 43 1-43 192-234 (550)
305 cd01080 NAD_bind_m-THF_DH_Cycl 97.0 0.0026 5.6E-08 58.2 8.2 76 148-267 45-121 (168)
306 smart00859 Semialdhyde_dh Semi 97.0 0.0024 5.3E-08 55.1 7.6 100 149-267 1-104 (122)
307 PRK07531 bifunctional 3-hydrox 97.0 0.0011 2.3E-08 71.7 6.5 67 459-526 184-254 (495)
308 PRK00258 aroE shikimate 5-dehy 97.0 0.0012 2.6E-08 65.8 6.3 71 148-237 124-196 (278)
309 cd01336 MDH_cytoplasmic_cytoso 97.0 0.0014 3E-08 66.8 6.5 100 148-262 3-128 (325)
310 PRK06718 precorrin-2 dehydroge 96.9 0.0089 1.9E-07 56.5 11.1 129 148-317 11-142 (202)
311 cd01078 NAD_bind_H4MPT_DH NADP 96.9 0.0015 3.2E-08 61.4 5.7 41 148-188 29-70 (194)
312 PRK08618 ornithine cyclodeamin 96.9 0.0023 5E-08 65.3 7.4 93 147-263 127-222 (325)
313 COG1712 Predicted dinucleotide 96.9 0.0055 1.2E-07 57.4 9.1 92 148-266 1-96 (255)
314 TIGR01035 hemA glutamyl-tRNA r 96.9 0.0014 3.1E-08 69.1 6.1 39 148-186 181-220 (417)
315 PTZ00075 Adenosylhomocysteinas 96.9 0.0025 5.4E-08 67.2 7.7 88 148-266 255-344 (476)
316 TIGR02992 ectoine_eutC ectoine 96.9 0.0041 8.9E-08 63.5 9.0 73 148-237 130-205 (326)
317 TIGR00518 alaDH alanine dehydr 96.9 0.0033 7.1E-08 65.2 8.4 41 146-186 166-206 (370)
318 TIGR01470 cysG_Nterm siroheme 96.9 0.0076 1.6E-07 57.1 10.0 130 148-317 10-142 (205)
319 PRK13301 putative L-aspartate 96.8 0.0058 1.3E-07 59.5 9.0 75 148-249 3-83 (267)
320 PLN00203 glutamyl-tRNA reducta 96.8 0.0019 4.2E-08 69.5 6.3 41 147-187 266-307 (519)
321 PRK00961 H(2)-dependent methyl 96.8 0.052 1.1E-06 52.4 15.1 106 218-326 133-242 (342)
322 PRK00045 hemA glutamyl-tRNA re 96.8 0.0038 8.2E-08 66.1 8.2 40 147-186 182-222 (423)
323 PLN02494 adenosylhomocysteinas 96.8 0.0033 7.1E-08 66.2 7.3 97 148-273 255-355 (477)
324 PRK09310 aroDE bifunctional 3- 96.7 0.0037 8E-08 67.1 7.6 70 148-238 333-402 (477)
325 TIGR01809 Shik-DH-AROM shikima 96.7 0.0044 9.5E-08 61.9 7.5 41 148-188 126-167 (282)
326 PRK08291 ectoine utilization p 96.7 0.0068 1.5E-07 62.0 8.9 74 147-237 132-208 (330)
327 TIGR01723 hmd_TIGR 5,10-methen 96.7 0.088 1.9E-06 51.0 15.5 105 218-326 131-240 (340)
328 PF01408 GFO_IDH_MocA: Oxidore 96.7 0.024 5.2E-07 48.4 11.0 67 149-238 2-74 (120)
329 PRK06046 alanine dehydrogenase 96.7 0.0072 1.6E-07 61.7 8.9 93 147-263 129-224 (326)
330 COG4091 Predicted homoserine d 96.7 0.025 5.5E-07 56.4 12.0 163 147-327 17-185 (438)
331 COG2910 Putative NADH-flavin r 96.6 0.0046 1E-07 56.2 6.3 38 148-185 1-39 (211)
332 PF01118 Semialdhyde_dh: Semia 96.6 0.0057 1.2E-07 52.7 6.8 98 149-267 1-102 (121)
333 TIGR01921 DAP-DH diaminopimela 96.6 0.024 5.1E-07 57.2 12.0 33 148-180 4-38 (324)
334 PRK00048 dihydrodipicolinate r 96.6 0.0046 1E-07 60.8 6.9 66 148-237 2-71 (257)
335 TIGR02356 adenyl_thiF thiazole 96.5 0.0047 1E-07 58.5 5.9 32 148-179 22-54 (202)
336 PRK06823 ornithine cyclodeamin 96.5 0.014 3.1E-07 59.1 9.3 93 147-263 128-223 (315)
337 PF03059 NAS: Nicotianamine sy 96.4 0.0087 1.9E-07 58.9 7.1 100 147-261 121-229 (276)
338 COG0373 HemA Glutamyl-tRNA red 96.4 0.0091 2E-07 62.0 7.3 40 148-187 179-219 (414)
339 PF13460 NAD_binding_10: NADH( 96.4 0.0069 1.5E-07 55.9 6.0 35 150-184 1-36 (183)
340 COG0169 AroE Shikimate 5-dehyd 96.3 0.011 2.3E-07 58.7 7.4 42 148-189 127-169 (283)
341 PRK06407 ornithine cyclodeamin 96.3 0.0094 2E-07 60.0 7.2 94 147-263 117-213 (301)
342 PRK12475 thiamine/molybdopteri 96.3 0.0096 2.1E-07 60.9 7.1 33 148-180 25-58 (338)
343 PRK14175 bifunctional 5,10-met 96.3 0.013 2.9E-07 57.9 7.8 72 148-263 159-231 (286)
344 PLN02819 lysine-ketoglutarate 96.3 0.04 8.7E-07 63.9 12.7 77 144-239 566-661 (1042)
345 COG1486 CelF Alpha-galactosida 96.2 0.041 8.9E-07 57.3 11.3 76 147-234 3-85 (442)
346 PRK13303 L-aspartate dehydroge 96.2 0.011 2.4E-07 58.4 6.9 68 148-237 2-72 (265)
347 PRK06719 precorrin-2 dehydroge 96.2 0.055 1.2E-06 49.0 10.9 31 148-178 14-44 (157)
348 cd05311 NAD_bind_2_malic_enz N 96.2 0.035 7.5E-07 53.5 10.1 32 148-179 26-60 (226)
349 PRK09424 pntA NAD(P) transhydr 96.2 0.023 5.1E-07 61.0 9.7 42 146-187 164-205 (509)
350 COG2423 Predicted ornithine cy 96.2 0.014 3.1E-07 59.0 7.6 94 147-263 130-226 (330)
351 PRK00683 murD UDP-N-acetylmura 96.2 0.047 1E-06 57.8 11.9 37 147-183 3-39 (418)
352 PRK13940 glutamyl-tRNA reducta 96.2 0.0068 1.5E-07 63.7 5.4 40 148-187 182-222 (414)
353 PF02423 OCD_Mu_crystall: Orni 96.2 0.013 2.9E-07 59.3 7.3 93 148-264 129-226 (313)
354 cd05191 NAD_bind_amino_acid_DH 96.2 0.025 5.5E-07 45.5 7.5 32 147-178 23-55 (86)
355 PF03435 Saccharop_dh: Sacchar 96.1 0.0092 2E-07 62.4 6.1 38 150-187 1-40 (386)
356 PRK07589 ornithine cyclodeamin 96.1 0.033 7.2E-07 57.1 9.7 95 147-263 129-226 (346)
357 TIGR00561 pntA NAD(P) transhyd 96.0 0.027 5.8E-07 60.4 9.1 41 147-187 164-204 (511)
358 PF02254 TrkA_N: TrkA-N domain 96.0 0.085 1.8E-06 44.7 10.7 91 150-262 1-97 (116)
359 PRK03659 glutathione-regulated 96.0 0.019 4.2E-07 63.6 8.4 98 148-263 401-500 (601)
360 COG0686 Ald Alanine dehydrogen 96.0 0.008 1.7E-07 59.1 4.6 93 147-261 168-267 (371)
361 PRK14192 bifunctional 5,10-met 96.0 0.018 4E-07 57.3 7.2 71 148-262 160-231 (283)
362 PRK10669 putative cation:proto 96.0 0.019 4.1E-07 63.2 8.1 95 148-260 418-514 (558)
363 TIGR00036 dapB dihydrodipicoli 96.0 0.024 5.2E-07 56.1 8.0 32 148-179 2-36 (266)
364 PRK09496 trkA potassium transp 95.9 0.024 5.3E-07 60.6 8.4 40 148-187 1-40 (453)
365 PRK07688 thiamine/molybdopteri 95.9 0.017 3.7E-07 59.2 6.7 33 148-180 25-58 (339)
366 PRK05562 precorrin-2 dehydroge 95.9 0.058 1.3E-06 51.5 9.9 129 148-317 26-158 (223)
367 COG1064 AdhP Zn-dependent alco 95.8 0.45 9.8E-06 48.3 16.0 41 147-187 167-207 (339)
368 PRK14027 quinate/shikimate deh 95.8 0.014 3.1E-07 58.1 5.4 41 148-188 128-169 (283)
369 COG0300 DltE Short-chain dehyd 95.7 0.034 7.3E-07 54.5 7.6 48 145-192 4-52 (265)
370 PF00070 Pyr_redox: Pyridine n 95.7 0.02 4.3E-07 45.3 5.0 35 149-183 1-35 (80)
371 PRK06153 hypothetical protein; 95.7 0.023 5E-07 58.3 6.4 32 148-179 177-209 (393)
372 cd01483 E1_enzyme_family Super 95.6 0.027 5.9E-07 50.0 6.2 32 149-180 1-33 (143)
373 PRK02318 mannitol-1-phosphate 95.6 0.013 2.9E-07 61.1 4.7 40 148-187 1-41 (381)
374 PF13380 CoA_binding_2: CoA bi 95.6 0.058 1.3E-06 46.1 7.8 73 148-251 1-78 (116)
375 PRK12548 shikimate 5-dehydroge 95.6 0.03 6.5E-07 56.1 6.9 34 148-181 127-161 (289)
376 PRK00141 murD UDP-N-acetylmura 95.5 0.16 3.5E-06 54.7 12.6 38 145-182 13-50 (473)
377 PRK12409 D-amino acid dehydrog 95.5 0.016 3.6E-07 61.0 4.8 34 147-180 1-34 (410)
378 PRK12749 quinate/shikimate deh 95.4 0.049 1.1E-06 54.5 7.8 34 148-181 125-159 (288)
379 PRK06199 ornithine cyclodeamin 95.4 0.045 9.7E-07 56.9 7.7 75 147-236 155-233 (379)
380 PRK04207 glyceraldehyde-3-phos 95.4 0.059 1.3E-06 55.3 8.5 106 148-264 2-111 (341)
381 PRK03562 glutathione-regulated 95.4 0.053 1.1E-06 60.3 8.7 91 147-259 400-496 (621)
382 PRK12550 shikimate 5-dehydroge 95.4 0.054 1.2E-06 53.6 7.9 40 148-187 123-163 (272)
383 PRK09496 trkA potassium transp 95.4 0.11 2.3E-06 55.6 10.7 41 147-187 231-271 (453)
384 PRK05600 thiamine biosynthesis 95.2 0.05 1.1E-06 56.4 7.4 32 148-179 42-74 (370)
385 PRK03369 murD UDP-N-acetylmura 95.2 0.2 4.4E-06 54.1 12.3 36 148-183 13-48 (488)
386 PRK14189 bifunctional 5,10-met 95.2 0.044 9.4E-07 54.3 6.5 71 148-263 159-231 (285)
387 PRK06270 homoserine dehydrogen 95.2 0.25 5.4E-06 50.8 12.2 22 148-169 3-24 (341)
388 cd00757 ThiF_MoeB_HesA_family 95.2 0.037 8E-07 53.4 5.7 33 148-180 22-55 (228)
389 KOG0022 Alcohol dehydrogenase, 95.2 0.64 1.4E-05 46.2 14.1 85 148-248 194-283 (375)
390 PRK05597 molybdopterin biosynt 95.1 0.018 3.9E-07 59.4 3.8 33 148-180 29-62 (355)
391 PRK01438 murD UDP-N-acetylmura 95.1 0.13 2.8E-06 55.5 10.5 36 146-181 15-50 (480)
392 cd00755 YgdL_like Family of ac 95.1 0.066 1.4E-06 51.6 7.4 33 148-180 12-45 (231)
393 PRK12828 short chain dehydroge 95.1 0.045 9.8E-07 52.5 6.1 38 148-185 8-46 (239)
394 COG1648 CysG Siroheme synthase 95.0 0.28 6E-06 46.6 11.0 130 148-317 13-145 (210)
395 cd05212 NAD_bind_m-THF_DH_Cycl 95.0 0.084 1.8E-06 46.7 6.9 72 148-263 29-101 (140)
396 KOG2018 Predicted dinucleotide 94.9 0.093 2E-06 51.6 7.5 109 124-247 62-185 (430)
397 PF13241 NAD_binding_7: Putati 94.9 0.062 1.3E-06 44.9 5.7 72 148-247 8-80 (103)
398 PRK08300 acetaldehyde dehydrog 94.9 0.14 3E-06 51.3 9.0 96 148-264 5-103 (302)
399 PRK08762 molybdopterin biosynt 94.9 0.054 1.2E-06 56.5 6.4 32 148-179 136-168 (376)
400 PRK12829 short chain dehydroge 94.8 0.13 2.9E-06 50.2 8.9 39 148-186 12-51 (264)
401 PRK00436 argC N-acetyl-gamma-g 94.8 0.071 1.5E-06 54.8 7.1 99 147-267 2-104 (343)
402 PRK14191 bifunctional 5,10-met 94.8 0.078 1.7E-06 52.5 7.0 71 148-262 158-229 (285)
403 TIGR02355 moeB molybdopterin s 94.8 0.064 1.4E-06 52.1 6.3 35 148-182 25-60 (240)
404 cd01484 E1-2_like Ubiquitin ac 94.8 0.079 1.7E-06 51.2 6.8 32 149-180 1-33 (234)
405 PF02882 THF_DHG_CYH_C: Tetrah 94.6 0.059 1.3E-06 48.7 5.2 74 148-265 37-111 (160)
406 PRK15116 sulfur acceptor prote 94.6 0.064 1.4E-06 52.8 5.9 34 148-181 31-65 (268)
407 KOG1200 Mitochondrial/plastidi 94.6 0.45 9.7E-06 44.0 10.6 40 148-187 14-55 (256)
408 PRK05690 molybdopterin biosynt 94.6 0.081 1.8E-06 51.6 6.5 33 148-180 33-66 (245)
409 CHL00194 ycf39 Ycf39; Provisio 94.6 0.079 1.7E-06 53.8 6.6 36 148-183 1-37 (317)
410 PRK07326 short chain dehydroge 94.5 0.082 1.8E-06 50.8 6.4 39 148-186 7-46 (237)
411 cd01486 Apg7 Apg7 is an E1-lik 94.5 0.018 3.9E-07 57.2 1.7 31 149-179 1-32 (307)
412 PLN03075 nicotianamine synthas 94.5 0.18 4E-06 50.2 8.7 102 146-262 123-233 (296)
413 PRK08328 hypothetical protein; 94.4 0.047 1E-06 52.8 4.4 35 148-182 28-63 (231)
414 TIGR03736 PRTRC_ThiF PRTRC sys 94.4 0.095 2E-06 50.9 6.3 33 148-180 12-55 (244)
415 PRK08223 hypothetical protein; 94.3 0.045 9.7E-07 54.3 4.1 33 148-180 28-61 (287)
416 PLN03209 translocon at the inn 94.3 0.25 5.5E-06 53.7 10.0 41 148-188 81-122 (576)
417 PRK00711 D-amino acid dehydrog 94.3 0.048 1E-06 57.5 4.6 34 148-181 1-34 (416)
418 PRK08340 glucose-1-dehydrogena 94.3 0.11 2.5E-06 50.8 6.9 41 148-188 1-42 (259)
419 PLN02968 Probable N-acetyl-gam 94.2 0.12 2.7E-06 53.7 7.2 101 146-267 37-139 (381)
420 PRK14106 murD UDP-N-acetylmura 94.2 0.68 1.5E-05 49.4 13.1 34 147-180 5-38 (450)
421 PRK07454 short chain dehydroge 94.2 0.12 2.6E-06 49.9 6.7 40 147-186 6-46 (241)
422 PRK06196 oxidoreductase; Provi 94.1 0.14 2.9E-06 52.0 7.3 42 148-189 27-69 (315)
423 cd01076 NAD_bind_1_Glu_DH NAD( 94.1 0.18 3.9E-06 48.6 7.7 32 147-178 31-63 (227)
424 PRK14178 bifunctional 5,10-met 94.1 0.15 3.2E-06 50.4 7.1 73 148-264 153-226 (279)
425 PRK10792 bifunctional 5,10-met 94.1 0.1 2.2E-06 51.7 6.1 71 148-262 160-231 (285)
426 COG0673 MviM Predicted dehydro 94.1 0.29 6.3E-06 50.0 9.8 72 146-239 2-80 (342)
427 PRK07062 short chain dehydroge 94.1 0.13 2.7E-06 50.5 6.8 41 148-188 9-50 (265)
428 PRK08267 short chain dehydroge 94.1 0.088 1.9E-06 51.5 5.7 40 147-186 1-41 (260)
429 PRK05868 hypothetical protein; 94.1 0.049 1.1E-06 56.7 4.1 36 147-182 1-36 (372)
430 PRK07825 short chain dehydroge 94.1 0.15 3.2E-06 50.3 7.3 40 148-187 6-46 (273)
431 PRK07774 short chain dehydroge 94.1 0.12 2.6E-06 50.1 6.6 39 148-186 7-46 (250)
432 COG1063 Tdh Threonine dehydrog 94.1 0.46 1E-05 49.0 11.1 39 149-187 171-210 (350)
433 PRK07831 short chain dehydroge 94.1 0.14 2.9E-06 50.3 6.9 43 147-189 17-61 (262)
434 PRK05866 short chain dehydroge 94.0 0.13 2.9E-06 51.5 6.9 40 148-187 41-81 (293)
435 cd05211 NAD_bind_Glu_Leu_Phe_V 94.0 0.17 3.7E-06 48.4 7.2 34 147-180 23-57 (217)
436 PRK07877 hypothetical protein; 94.0 0.075 1.6E-06 59.5 5.4 32 148-180 108-141 (722)
437 PF01266 DAO: FAD dependent ox 94.0 0.066 1.4E-06 54.6 4.7 31 149-179 1-31 (358)
438 COG1179 Dinucleotide-utilizing 94.0 0.32 6.9E-06 46.5 8.7 37 148-184 31-68 (263)
439 TIGR01850 argC N-acetyl-gamma- 93.9 0.13 2.8E-06 52.9 6.7 99 148-267 1-104 (346)
440 PRK07890 short chain dehydroge 93.9 0.11 2.4E-06 50.6 5.9 40 148-187 6-46 (258)
441 TIGR01381 E1_like_apg7 E1-like 93.9 0.029 6.3E-07 61.1 1.9 32 148-179 339-371 (664)
442 PRK06194 hypothetical protein; 93.9 0.15 3.2E-06 50.7 7.0 40 148-187 7-47 (287)
443 PRK06057 short chain dehydroge 93.9 0.12 2.6E-06 50.4 6.1 40 147-186 7-47 (255)
444 PF00899 ThiF: ThiF family; I 93.9 0.071 1.5E-06 46.8 4.0 32 148-179 3-35 (135)
445 PRK05786 fabG 3-ketoacyl-(acyl 93.8 0.37 7.9E-06 46.3 9.4 39 148-186 6-45 (238)
446 PF13450 NAD_binding_8: NAD(P) 93.8 0.084 1.8E-06 40.4 3.9 30 152-181 1-30 (68)
447 PLN00016 RNA-binding protein; 93.8 0.14 3E-06 53.4 6.9 37 146-182 51-92 (378)
448 PRK07832 short chain dehydroge 93.8 0.18 3.9E-06 49.7 7.4 40 148-187 1-41 (272)
449 PRK01710 murD UDP-N-acetylmura 93.8 0.27 5.8E-06 52.7 9.1 35 147-181 14-48 (458)
450 PRK13394 3-hydroxybutyrate deh 93.8 0.18 3.9E-06 49.1 7.2 43 147-189 7-50 (262)
451 PRK07236 hypothetical protein; 93.8 0.071 1.5E-06 55.7 4.6 36 146-181 5-40 (386)
452 PRK10538 malonic semialdehyde 93.8 0.14 3E-06 49.8 6.4 39 148-186 1-40 (248)
453 TIGR03215 ac_ald_DH_ac acetald 93.7 0.27 5.9E-06 48.9 8.3 90 148-263 2-96 (285)
454 cd01079 NAD_bind_m-THF_DH NAD 93.7 0.34 7.3E-06 45.1 8.3 89 148-266 63-160 (197)
455 cd01492 Aos1_SUMO Ubiquitin ac 93.7 0.081 1.8E-06 49.8 4.4 33 148-180 22-55 (197)
456 PRK12429 3-hydroxybutyrate deh 93.7 0.18 3.9E-06 49.0 7.1 40 148-187 5-45 (258)
457 PF01494 FAD_binding_3: FAD bi 93.7 0.06 1.3E-06 54.8 3.8 33 149-181 3-35 (356)
458 PRK08163 salicylate hydroxylas 93.7 0.072 1.6E-06 55.8 4.4 34 148-181 5-38 (396)
459 PRK09186 flagellin modificatio 93.7 0.18 3.9E-06 49.1 7.0 40 148-187 5-45 (256)
460 PRK10637 cysG siroheme synthas 93.6 0.4 8.7E-06 51.3 10.0 129 148-317 13-145 (457)
461 PRK08643 acetoin reductase; Va 93.6 0.15 3.3E-06 49.6 6.3 40 148-187 3-43 (256)
462 PRK11259 solA N-methyltryptoph 93.6 0.08 1.7E-06 54.9 4.5 32 149-180 5-36 (376)
463 PRK14176 bifunctional 5,10-met 93.6 0.17 3.8E-06 50.1 6.5 71 148-263 165-237 (287)
464 PRK12939 short chain dehydroge 93.5 0.16 3.5E-06 49.1 6.3 40 148-187 8-48 (250)
465 KOG0068 D-3-phosphoglycerate d 93.5 0.17 3.8E-06 50.4 6.3 100 148-274 147-250 (406)
466 PRK07494 2-octaprenyl-6-methox 93.5 0.08 1.7E-06 55.3 4.4 35 147-181 7-41 (388)
467 PRK02472 murD UDP-N-acetylmura 93.5 0.61 1.3E-05 49.7 11.2 34 148-181 6-39 (447)
468 PRK07067 sorbitol dehydrogenas 93.5 0.13 2.8E-06 50.2 5.6 40 148-187 7-47 (257)
469 PRK12826 3-ketoacyl-(acyl-carr 93.4 0.15 3.2E-06 49.3 5.9 39 148-186 7-46 (251)
470 PRK06753 hypothetical protein; 93.4 0.08 1.7E-06 54.9 4.2 34 148-181 1-34 (373)
471 COG1062 AdhC Zn-dependent alco 93.4 1.7 3.6E-05 43.9 13.0 40 148-187 187-227 (366)
472 PRK07063 short chain dehydroge 93.4 0.16 3.5E-06 49.6 6.1 41 148-188 8-49 (260)
473 COG2344 AT-rich DNA-binding pr 93.4 0.29 6.3E-06 44.8 7.1 40 144-183 81-123 (211)
474 cd05295 MDH_like Malate dehydr 93.4 0.33 7.2E-06 51.3 8.6 98 148-259 124-247 (452)
475 KOG2305 3-hydroxyacyl-CoA dehy 93.3 0.05 1.1E-06 51.1 2.2 48 460-508 189-236 (313)
476 TIGR03840 TMPT_Se_Te thiopurin 93.3 0.8 1.7E-05 43.6 10.5 98 148-257 36-147 (213)
477 PRK08251 short chain dehydroge 93.3 0.22 4.8E-06 48.2 6.9 40 148-187 3-43 (248)
478 PRK05854 short chain dehydroge 93.3 0.33 7.1E-06 49.2 8.3 43 148-190 15-58 (313)
479 TIGR01377 soxA_mon sarcosine o 93.3 0.089 1.9E-06 54.7 4.2 31 149-179 2-32 (380)
480 COG0499 SAM1 S-adenosylhomocys 93.3 0.24 5.1E-06 50.0 6.8 88 148-264 210-297 (420)
481 COG0136 Asd Aspartate-semialde 93.2 0.47 1E-05 47.8 9.0 146 148-325 2-156 (334)
482 PRK06847 hypothetical protein; 93.2 0.089 1.9E-06 54.6 4.2 35 147-181 4-38 (375)
483 PRK05650 short chain dehydroge 93.2 0.22 4.7E-06 49.1 6.8 40 148-187 1-41 (270)
484 PRK07478 short chain dehydroge 93.2 0.25 5.4E-06 48.1 7.1 40 148-187 7-47 (254)
485 PRK07074 short chain dehydroge 93.2 0.15 3.3E-06 49.6 5.6 40 148-187 3-43 (257)
486 PRK05867 short chain dehydroge 93.2 0.2 4.4E-06 48.7 6.4 40 148-187 10-50 (253)
487 PRK08277 D-mannonate oxidoredu 93.2 0.22 4.7E-06 49.3 6.7 39 148-186 11-50 (278)
488 cd01490 Ube1_repeat2 Ubiquitin 93.1 0.22 4.8E-06 52.4 6.9 32 149-180 1-38 (435)
489 PRK09242 tropinone reductase; 93.1 0.22 4.8E-06 48.5 6.6 40 148-187 10-50 (257)
490 PRK07024 short chain dehydroge 93.1 0.18 3.9E-06 49.3 5.9 39 148-186 3-42 (257)
491 PRK01747 mnmC bifunctional tRN 93.0 0.093 2E-06 59.0 4.2 33 148-180 261-293 (662)
492 PRK11579 putative oxidoreducta 93.0 0.51 1.1E-05 48.6 9.4 67 148-239 5-77 (346)
493 PRK08374 homoserine dehydrogen 93.0 0.44 9.6E-06 48.8 8.8 21 148-168 3-23 (336)
494 PRK06079 enoyl-(acyl carrier p 93.0 0.17 3.7E-06 49.4 5.6 33 148-180 8-43 (252)
495 COG0665 DadA Glycine/D-amino a 93.0 0.11 2.4E-06 54.0 4.5 35 147-181 4-38 (387)
496 PRK07109 short chain dehydroge 92.9 0.29 6.2E-06 50.1 7.4 42 148-189 9-51 (334)
497 PRK08265 short chain dehydroge 92.9 0.17 3.7E-06 49.6 5.5 39 148-186 7-46 (261)
498 PRK00421 murC UDP-N-acetylmura 92.9 0.32 7E-06 52.2 7.9 35 147-181 7-42 (461)
499 PRK06139 short chain dehydroge 92.8 0.27 5.9E-06 50.3 7.0 42 148-189 8-50 (330)
500 PRK07588 hypothetical protein; 92.8 0.11 2.3E-06 54.4 4.1 34 148-181 1-34 (391)
No 1
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=1.4e-94 Score=797.75 Aligned_cols=518 Identities=31% Similarity=0.475 Sum_probs=462.6
Q ss_pred CccCCCCCChhHHHhCCCcceecCC-------------CchHHHHHHHHHHhhccCCCcchhhcccCCCCCc-----hHH
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAP-------------NQLVSTARQWALDILEHRRPWVATLYKTDKIEPL-----GEA 62 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~-------------~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~-----~~~ 62 (535)
|+|||++++|+||+++||||+|||+ +++++.|.+++++++..+.+..+.....++..+. ...
T Consensus 174 l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (737)
T TIGR02441 174 MMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMTNPFVR 253 (737)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhcccchhH
Confidence 5799999999999999999999987 4588888899988765421221111111121110 123
Q ss_pred HHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCCCCCCCC
Q 009395 63 REIFKFARAQARKQAPN-LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLG 141 (535)
Q Consensus 63 ~~~~~~~~~~~~~~~~~-~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~~~~~~~ 141 (535)
..++..+++++.+++++ ||||.+++++|+.+...+++++++.|++.|.+|+.|++++++++.|+.++..++.+. +
T Consensus 254 ~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~~----~ 329 (737)
T TIGR02441 254 QQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNKF----G 329 (737)
T ss_pred HHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCC----C
Confidence 45678888899888875 999999999999999999999999999999999999999999999999999988643 1
Q ss_pred CCCCCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395 142 LAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (535)
Q Consensus 142 ~~~~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (535)
..++++++|+|||+|.||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++.+.+..+++|++++++
T Consensus 330 ~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 409 (737)
T TIGR02441 330 KPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY 409 (737)
T ss_pred CCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH
Confidence 23468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCC
Q 009395 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN 301 (535)
Q Consensus 222 ~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~ 301 (535)
+++++||+|||||||++++|+++|+++++++++++|++||||+++++++++.+.+|+||+|+|||+|++.+++|||++++
T Consensus 410 ~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~ 489 (737)
T TIGR02441 410 SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHD 489 (737)
T ss_pred HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCChhHHHHHHHhchHH
Q 009395 302 QTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGV 381 (535)
Q Consensus 302 ~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~~ID~a~~g~G~p~GPf~~~D~~Gld~ 381 (535)
.|++++++.+..|++.+||.|++++|+|||++||++.++++||++++++|+++++||+++++||||||||+++|.+|+|+
T Consensus 490 ~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D~vGld~ 569 (737)
T TIGR02441 490 GTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLADEVGVDV 569 (737)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCc--cCccHHHHHHCCCCCccCCceeeeecCCC--CCCCChhHHHHHHHHhhccCCcCCcccccC
Q 009395 382 AIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYDERR--KASPDPEVKKFIEKARSMSGVAIDPKFAKL 457 (535)
Q Consensus 382 ~~~~~~~l~~~~~~~~~--~~~~l~~~~~~G~~G~k~g~GFY~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (535)
++++++.+++.+++++. |++++++|+++|++|+|+|+|||+|++++ +..+++++..++...+. .+. ....
T Consensus 570 ~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k----~p~--~~~~ 643 (737)
T TIGR02441 570 AEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKL----PPK--AEVS 643 (737)
T ss_pred HHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhcc----Ccc--cccC
Confidence 99999999999888653 57899999999999999999999998654 46788988887754432 111 0135
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhh---hcCcchHHHHHHHHHhHhcC
Q 009395 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFI---HRGFSKSSSCFKNLLCYFDQ 528 (535)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~---~~G~~~~~~~~~~~~~~~~~ 528 (535)
+.++|+||++.+++||+++|++|||+.+++|||.+|++|+|||+|+||||. .+|+|.+.+.++.+++.+++
T Consensus 644 ~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~~~~~~l~~~~g~ 717 (737)
T TIGR02441 644 SPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGV 717 (737)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence 678999999999999999999999977999999999999999998888875 58999999999999987763
No 2
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=2.1e-92 Score=779.00 Aligned_cols=514 Identities=31% Similarity=0.546 Sum_probs=454.0
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCC----chHHHHHHHHHHHHHHH-
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEP----LGEAREIFKFARAQARK- 75 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~- 75 (535)
|+|||++++|+||+++||||++||++++++.|.++++++.....++.++. ..+..+ .......+..++++..+
T Consensus 166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (714)
T TIGR02437 166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKR--QPKLEPLKLSKIEAMMSFTTAKGMVAQV 243 (714)
T ss_pred HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccC--CCCcccccccchHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999988665322222111 111111 11112235556665544
Q ss_pred hCCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCcceEEEEeC
Q 009395 76 QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGG 155 (535)
Q Consensus 76 ~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~vIG~ 155 (535)
..++||||..++++++.+...+++++++.|++.|.+++.|+++++++++|+.+|.+++.+.. .+..+++++||+|||+
T Consensus 244 ~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~v~ViGa 321 (714)
T TIGR02437 244 AGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQAAVLGA 321 (714)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccceEEEECC
Confidence 45689999999999999999999999999999999999999999999999999999886422 1234578999999999
Q ss_pred ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecc
Q 009395 156 GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235 (535)
Q Consensus 156 G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avp 235 (535)
|.||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++.+.+..+++|+++++++++++||+||||||
T Consensus 322 G~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~ 401 (714)
T TIGR02437 322 GIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVV 401 (714)
T ss_pred chHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred CChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHH
Q 009395 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIG 315 (535)
Q Consensus 236 e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~ 315 (535)
|++++|+++|+++++++++++|++||||+++++++++.+.+|+||+|+|||+|++.+++|||++++.|++++++.+.+++
T Consensus 402 E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~ 481 (714)
T TIGR02437 402 ENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYA 481 (714)
T ss_pred ccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCChhHHHHHHHhchHHHHHHHHHHHHhCC
Q 009395 316 KKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFP 394 (535)
Q Consensus 316 ~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~ 394 (535)
+.+||.|++++|+|||++||++.++++||++++++|++|++||++++ +||||||||+++|.+|+|+++++++.++..++
T Consensus 482 ~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~~~~~~~ 561 (714)
T TIGR02437 482 SKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEGFP 561 (714)
T ss_pred HHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998 89999999999999999999999999999888
Q ss_pred CCC--ccCccHHHHHHCCCCCccCCceeeeecCC---C-CCCCChhHHHHHHHHhhccCCcCCcccccCCHHHHHHHHHH
Q 009395 395 ERT--YKSMIIPIMQEDKRAGETTRKGFYLYDER---R-KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFF 468 (535)
Q Consensus 395 ~~~--~~~~~l~~~~~~G~~G~k~g~GFY~y~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~ 468 (535)
+++ .+++++++|+++|++|+|+|+|||+|+++ + +..+|+++..++...+. + ...+++++|+||++.
T Consensus 562 ~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~i~~Rll~ 633 (714)
T TIGR02437 562 DRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVY-----E---QRDFDDEEIIARMMI 633 (714)
T ss_pred cccccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhc-----c---cCCCCHHHHHHHHHH
Confidence 764 24689999999999999999999999643 2 35678888877754322 1 124678899999999
Q ss_pred HHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhh---hcCcchHHHHHHHHHhHhc
Q 009395 469 PVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFI---HRGFSKSSSCFKNLLCYFD 527 (535)
Q Consensus 469 ~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~---~~G~~~~~~~~~~~~~~~~ 527 (535)
+++||+++|++|||+.+++|||.++++|+|||+|++|||. .+|+|.+...++.+ ..++
T Consensus 634 ~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~-~~~g 694 (714)
T TIGR02437 634 PMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQY-AELG 694 (714)
T ss_pred HHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHH-HHhC
Confidence 9999999999999777999999999999999997777775 59999999999954 3554
No 3
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=1.9e-91 Score=771.81 Aligned_cols=511 Identities=34% Similarity=0.531 Sum_probs=454.7
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCC--CCchHHHHHHHHHHHHHHHhCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKI--EPLGEAREIFKFARAQARKQAP 78 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (535)
|+|||++++|+||+++||||+|||+++++++|.++|++. . +.+++.....++ .++.....++..+.++++++++
T Consensus 162 llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~--~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~ 237 (699)
T TIGR02440 162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG--K--PIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQ 237 (699)
T ss_pred HHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC--C--CCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999751 1 111110111111 0111223455666777777765
Q ss_pred -CCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCcceEEEEeCCh
Q 009395 79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (535)
Q Consensus 79 -~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~vIG~G~ 157 (535)
+|||+.++|++++.+...+++++++.|++.|..++.|+|+++++++|+.++..++.+.. . ..+.+++||+|||+|.
T Consensus 238 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~ 314 (699)
T TIGR02440 238 GNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPAKIKKVGILGGGL 314 (699)
T ss_pred cCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCcccccEEEEECCcH
Confidence 79999999999999999999999999999999999999999999999999988876442 2 2346789999999999
Q ss_pred hhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccC
Q 009395 158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (535)
Q Consensus 158 mG~~iA~~l~-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe 236 (535)
||++||..++ ++|++|+++|++++.++++..++.+.+++.+++|.+++.+.+..+.+|+++++++++++||+|||||||
T Consensus 315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~E 394 (699)
T TIGR02440 315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFE 394 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEeccc
Confidence 9999999998 589999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Q 009395 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316 (535)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~~ 316 (535)
++++|+++|+++++++++++|++||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+.+|++
T Consensus 395 ~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~ 474 (699)
T TIGR02440 395 DLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAK 474 (699)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCChhHHHHHHHhchHHHHHHHHHHHHhCCCC
Q 009395 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (535)
Q Consensus 317 ~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~~ID~a~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 396 (535)
.+||.|++++|.|||++||++.++++||++++++|+++++||.+++++|||||||+++|.+|+|+++++++.+++.++++
T Consensus 475 ~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~~ 554 (699)
T TIGR02440 475 KQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGER 554 (699)
T ss_pred HcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccCccHHHHHHCCCCCccCCceeeeecCCC-CCCCChhHHHHHHHHhhccCCcCCcccccCCHHHHHHHHHHHHHHHHH
Q 009395 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERR-KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEAC 475 (535)
Q Consensus 397 ~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~ 475 (535)
+.|++++++|+++|++|+|||+|||+|++++ +..+++.+..++.. .+ ...++..+|+||++.+++||++
T Consensus 555 ~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~g~v~~Rll~~~~~Ea~ 624 (699)
T TIGR02440 555 FKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLGI-------KP---GVDKEASAVAERCVMLMLNEAV 624 (699)
T ss_pred CCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhCc-------CC---CCCCCHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999998543 45678877765521 11 1246788999999999999999
Q ss_pred HHHhcCcCCChhHHHHHHHhccCCCC---CcchhhhhcCcchHHHHHHHHHhHhcC
Q 009395 476 RVFAEGIAVKAADLDIASVMGMGFPP---YRFVTFIHRGFSKSSSCFKNLLCYFDQ 528 (535)
Q Consensus 476 ~~~~~gv~~~~~diD~~~~~g~g~~~---~~~g~~~~~G~~~~~~~~~~~~~~~~~ 528 (535)
+|++|||+.+++|||.++++|+|||+ |||.++|.+|+|.+++.++.+++.+++
T Consensus 625 ~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~ 680 (699)
T TIGR02440 625 RCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGD 680 (699)
T ss_pred HHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCC
Confidence 99999995599999999999999998 555555679999999999999988765
No 4
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.1e-90 Score=767.55 Aligned_cols=511 Identities=34% Similarity=0.575 Sum_probs=452.8
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCc----hHHHHHHHHHHHHHHHh
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPL----GEAREIFKFARAQARKQ 76 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 76 (535)
|++||++++|+||+++||||+|||+++++++|.++|++++.++.+|..+. .+..++. .....+++.+++.+.++
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~--~~~~~p~a~~~~~~~~~~~~~k~~~~~~ 243 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARR--QPKLEPLKLSKIEAMMSFTTAKGMVAQK 243 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCcccccc--CcccccccccchhHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999998632222211 1111111 12233556666666454
Q ss_pred -CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCcceEEEEeC
Q 009395 77 -APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGG 155 (535)
Q Consensus 77 -~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~vIG~ 155 (535)
.++||++..++++++.+...+++++++.|.+.|..++.|+|+++++++|+++|.+++.+.. ....+++++||+|||+
T Consensus 244 ~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~--~~~~~~~i~~v~ViGa 321 (715)
T PRK11730 244 AGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKK--LAKDAKPVKQAAVLGA 321 (715)
T ss_pred hccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC--CCCCccccceEEEECC
Confidence 4589999999999999988899999999999999999999999999999999999876432 1124467999999999
Q ss_pred ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecc
Q 009395 156 GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235 (535)
Q Consensus 156 G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avp 235 (535)
|.||.+||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++.+.+..+++|+++++++++++||+||||||
T Consensus 322 G~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~ 401 (715)
T PRK11730 322 GIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVV 401 (715)
T ss_pred chhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHH
Q 009395 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIG 315 (535)
Q Consensus 236 e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~ 315 (535)
|++++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||+|++.+++|||++++.|++++++.+..|+
T Consensus 402 E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~ 481 (715)
T PRK11730 402 ENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYA 481 (715)
T ss_pred CcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCChhHHHHHHHhchHHHHHHHHHHHHhCC
Q 009395 316 KKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFP 394 (535)
Q Consensus 316 ~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~ 394 (535)
+.+||.|++++|+|||++||++.++++|+++++++|.++++||++++ ++|||||||+++|.+|+|+++++++.++..++
T Consensus 482 ~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~~~~~~~ 561 (715)
T PRK11730 482 SKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAEGFP 561 (715)
T ss_pred HHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999 89999999999999999999999999999888
Q ss_pred CCC--ccCccHHHHHHCCCCCccCCceeeeecCCC----CCCCChhHHHHHHHHhhccCCcCCcccccCCHHHHHHHHHH
Q 009395 395 ERT--YKSMIIPIMQEDKRAGETTRKGFYLYDERR----KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFF 468 (535)
Q Consensus 395 ~~~--~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~ 468 (535)
++. .+++++++|+++|++|+|+|+|||+|+++. +...|+++.+++..... . ...+++++|+||++.
T Consensus 562 ~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~i~nRll~ 633 (715)
T PRK11730 562 DRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ----P----KREFSDEEIIARMMI 633 (715)
T ss_pred CccccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc----c----cCCCCHHHHHHHHHH
Confidence 764 246899999999999999999999997432 34678888777764321 1 124678899999999
Q ss_pred HHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhh---hhcCcchHHHHHHHHH
Q 009395 469 PVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTF---IHRGFSKSSSCFKNLL 523 (535)
Q Consensus 469 ~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~---~~~G~~~~~~~~~~~~ 523 (535)
+++||+++|++||++.+|+|||.++++|+|||++++||| |.+|+|++.++++.+.
T Consensus 634 ~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~ 691 (715)
T PRK11730 634 PMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA 691 (715)
T ss_pred HHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH
Confidence 999999999999985599999999999999998555555 6799999999999754
No 5
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.5e-90 Score=766.57 Aligned_cols=511 Identities=34% Similarity=0.529 Sum_probs=456.0
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCC--CchHHHHHHHHHHHHHHHhCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIE--PLGEAREIFKFARAQARKQAP 78 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 78 (535)
|+|||++++|+||+++||||++||+++++++|.++|+++... +++.....++. ++......+..++++++++++
T Consensus 167 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 242 (708)
T PRK11154 167 MILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPA----RRPLPVRERLLEGNPLGRALLFKQARKKTLAKTQ 242 (708)
T ss_pred HHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCc----cCcCCchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 579999999999999999999999999999999999884221 01100000011 111224567778888888876
Q ss_pred -CCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCcceEEEEeCCh
Q 009395 79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (535)
Q Consensus 79 -~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~vIG~G~ 157 (535)
+|+|+..+|++++.+...++++++..|.+.|..++.|+|+++++++|+.++.+++.+.. + ..+.+++||+|||+|.
T Consensus 243 g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~ 319 (708)
T PRK11154 243 GNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLGGGL 319 (708)
T ss_pred cCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEECCch
Confidence 79999999999999998899999999999999999999999999999999988876442 2 2346799999999999
Q ss_pred hhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccC
Q 009395 158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (535)
Q Consensus 158 mG~~iA~~l~-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe 236 (535)
||++||..++ .+|++|+++|++++.++++..++.+.+++.+++|.+++.+.+..+++|+++++++++++||+|||||||
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E 399 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFE 399 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccc
Confidence 9999999999 889999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Q 009395 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316 (535)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~~ 316 (535)
++++|+++|+++++++++++|++||||++++++|++.+.+|+||+|+|||+|++.+++|||++++.|++++++.+..+++
T Consensus 400 ~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~ 479 (708)
T PRK11154 400 DLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK 479 (708)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCChhHHHHHHHhchHHHHHHHHHHHHhCCCC
Q 009395 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (535)
Q Consensus 317 ~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~~ID~a~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 396 (535)
.+||.|++++|.|||++||++.++++||++++++|+++++||.+++++|||+|||+++|.+|+|++.++++.+++.++++
T Consensus 480 ~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~~~ 559 (708)
T PRK11154 480 KQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALGER 559 (708)
T ss_pred HcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CccCccHHHHHHCCCCCccCCceeeeecCCC---CCCCChhHHHHHHHHhhccCCcCCcccccCCHHHHHHHHHHHHHHH
Q 009395 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERR---KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNE 473 (535)
Q Consensus 397 ~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~e 473 (535)
+.|++++++|+++|++|+|+|+|||+|+++. +...++++...+.. .+ ...++..+|+||++.+++||
T Consensus 560 ~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~g~i~~Rll~~~~nE 629 (708)
T PRK11154 560 FSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLGI-------TP---QSRLSANEIAERCVMLMLNE 629 (708)
T ss_pred CCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhcc-------CC---CCCCCHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999998532 24567777655421 11 12578899999999999999
Q ss_pred HHHHHhcCcCCChhHHHHHHHhccCCCCCcchhh---hhcCcchHHHHHHHHHhHhcC
Q 009395 474 ACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTF---IHRGFSKSSSCFKNLLCYFDQ 528 (535)
Q Consensus 474 a~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~---~~~G~~~~~~~~~~~~~~~~~ 528 (535)
+++|++|||+.+++|||.+|++|+|||++++||| |.+|+|.+.+.++.+++.+++
T Consensus 630 a~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~ 687 (708)
T PRK11154 630 AVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGD 687 (708)
T ss_pred HHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCC
Confidence 9999999995699999999999999999555555 679999999999999988765
No 6
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=5.3e-73 Score=601.16 Aligned_cols=385 Identities=31% Similarity=0.487 Sum_probs=342.5
Q ss_pred CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (535)
Q Consensus 145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (535)
.+++||+|||+|.||++||..++++|++|++||++++.++++.+++++.+++.+++|.+++++.+..+++++.+++++++
T Consensus 3 ~~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l 82 (503)
T TIGR02279 3 INVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHAL 82 (503)
T ss_pred CCccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCC
Q 009395 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (535)
Q Consensus 225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts 304 (535)
.+||+|||||||+.++|+.+|+++++.+++++||+||||+++++++++.+.+|.|++|+|||+|++.++++|+++++.|+
T Consensus 83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts 162 (503)
T TIGR02279 83 ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATA 162 (503)
T ss_pred CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHH
Q 009395 305 PQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVA 382 (535)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~ 382 (535)
+++++.+.++++.+||.|++++|+|||++||++.++++||+.++++|. +|++||++++ ++|||||||+++|.+|+|++
T Consensus 163 ~e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~ 242 (503)
T TIGR02279 163 AEVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVN 242 (503)
T ss_pred HHHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999999999999984 9999999999 89999999999999999999
Q ss_pred HHHHHHHHHhC-CCC-CccCccHHHHHHCCCCCccCCceeeeecCCCCC-CC----------------------------
Q 009395 383 IATGMQFIENF-PER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERRKA-SP---------------------------- 431 (535)
Q Consensus 383 ~~~~~~l~~~~-~~~-~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~~~-~~---------------------------- 431 (535)
+++++.+++.+ ++. +.|++++++|+++|++|+|||+|||+|+++.+. .+
T Consensus 243 ~~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (503)
T TIGR02279 243 FAVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDSFSPRVTVVGDIGAAAPLLARL 322 (503)
T ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCCCCccccccccccceeecccccchhhHHHHH
Confidence 99999988864 554 457788999999999999999999999864321 11
Q ss_pred -----------------------------------------ChhHHHHHHHHhhccCC--cCCc----------------
Q 009395 432 -----------------------------------------DPEVKKFIEKARSMSGV--AIDP---------------- 452 (535)
Q Consensus 432 -----------------------------------------~~~~~~~~~~~~~~~~~--~~~~---------------- 452 (535)
|+.+..++...+....+ .+..
T Consensus 323 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~ 402 (503)
T TIGR02279 323 EAAGIKVEKKSGRGVTQIGDALLALTDGRTAQARAIELARPNLVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQ 402 (503)
T ss_pred HhccccccccccccccccchhhhhhccccchhhhhhhcCCCCchHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 12222222211111111 1100
Q ss_pred ---ccccCCH--HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhc
Q 009395 453 ---KFAKLSE--KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFD 527 (535)
Q Consensus 453 ---~~~~~~~--~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~ 527 (535)
.+..+.+ .+|+||++.+++|||++++++|++ +++|||.+|++|+|||+||+.++|.+|+|.+++++++|++.++
T Consensus 403 ~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGva-s~~dID~a~~~g~G~P~GP~~~~D~~Gld~~~~~l~~l~~~~~ 481 (503)
T TIGR02279 403 AGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVA-SAQDIDTAMRLGVNYPYGPLAWAAQLGWQRILRVLENLQHHYG 481 (503)
T ss_pred cCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCcCHHHHHHHhCHHHHHHHHHHHHHHcC
Confidence 0012333 699999999999999999999999 9999999999999999999999999999999999999998888
Q ss_pred CCC
Q 009395 528 QGR 530 (535)
Q Consensus 528 ~~~ 530 (535)
+++
T Consensus 482 ~~~ 484 (503)
T TIGR02279 482 EER 484 (503)
T ss_pred CCc
Confidence 644
No 7
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.1e-70 Score=585.47 Aligned_cols=386 Identities=31% Similarity=0.486 Sum_probs=341.7
Q ss_pred CCCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395 144 PRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (535)
Q Consensus 144 ~~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (535)
.+++++|+|||+|.||++||..++++|++|++||++++.++.+.+++++.+++.+++|.++.++.+..++++++++++++
T Consensus 4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD 83 (507)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t 303 (535)
+.+||+|||||||+.++|+.+|++++..+++++|++|||||+++++++..+.+|+|++|+|||+|++.++|+|+++++.|
T Consensus 84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T 163 (507)
T PRK08268 84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT 163 (507)
T ss_pred hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHH
Q 009395 304 SPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGV 381 (535)
Q Consensus 304 s~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~ 381 (535)
++++++.+.++++.+||.+++++|+|||++||++.++++|++.++++|. ++++||++++ ++|||||||+++|.+|+|+
T Consensus 164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv 243 (507)
T PRK08268 164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDV 243 (507)
T ss_pred CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHH
Confidence 9999999999999999999999999999999999999999999999985 9999999998 8999999999999999999
Q ss_pred HHHHHHHHHHhC-CC-CCccCccHHHHHHCCCCCccCCceeeeecCCCC-CCCChh--------------------HHHH
Q 009395 382 AIATGMQFIENF-PE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDERRK-ASPDPE--------------------VKKF 438 (535)
Q Consensus 382 ~~~~~~~l~~~~-~~-~~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~~-~~~~~~--------------------~~~~ 438 (535)
.+++.+.+++.+ ++ ++.+++++++|+++|++|+|+|+|||+|+++++ ...+++ ..++
T Consensus 244 ~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (507)
T PRK08268 244 NHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWVSADVEGDLAALARL 323 (507)
T ss_pred HHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccccccccchhHHHHHH
Confidence 999999888764 33 555778999999999999999999999975432 222222 1122
Q ss_pred HHHHh----------------------------hccCCcC-Cc------------ccccC--------------------
Q 009395 439 IEKAR----------------------------SMSGVAI-DP------------KFAKL-------------------- 457 (535)
Q Consensus 439 ~~~~~----------------------------~~~~~~~-~~------------~~~~~-------------------- 457 (535)
+.... ......+ +. +...+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~ 403 (507)
T PRK08268 324 LERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQ 403 (507)
T ss_pred HHhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11000 0000000 00 00001
Q ss_pred ----------CHHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhc
Q 009395 458 ----------SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFD 527 (535)
Q Consensus 458 ----------~~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~ 527 (535)
+..+|+||++.+++||+++|++||++ +++|||.+|++|+|||+||+.++|.+|+|..+++++.++..++
T Consensus 404 ~gk~pi~v~d~~Gfi~nRll~~~~nEa~~ll~eGva-s~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g 482 (507)
T PRK08268 404 DGKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGIA-SPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYG 482 (507)
T ss_pred cCCeeEEeCCCccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence 45699999999999999999999998 9999999999999999999999999999999999999998888
Q ss_pred CCC
Q 009395 528 QGR 530 (535)
Q Consensus 528 ~~~ 530 (535)
+++
T Consensus 483 ~~~ 485 (507)
T PRK08268 483 DPR 485 (507)
T ss_pred CCc
Confidence 644
No 8
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=2e-66 Score=509.25 Aligned_cols=280 Identities=38% Similarity=0.667 Sum_probs=270.1
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
.++||+|||+|.||++||..++..|++|+++|++++.++++...+.+.+++.+++|.+++.+.+..+++++.++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 57899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCH
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~ 305 (535)
+||+|||+|+|++++|+++|++++.++++++|++||||+++++++++.+.+|+||+|+|||||++.|+|||++++..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHHH
Q 009395 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (535)
Q Consensus 306 e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~ 383 (535)
++++.+.+|.+.+||.|++++|.|||++||++.++++||++++.+|+ +|++||.+++ ++|||||||+++|.+|+|+++
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~ 241 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence 99999999999999999888999999999999999999999999995 9999999999 899999999999999999999
Q ss_pred HHHHHHHHhCCCC-C-ccCccHHHHHHCCCCCccCCceeeeecC
Q 009395 384 ATGMQFIENFPER-T-YKSMIIPIMQEDKRAGETTRKGFYLYDE 425 (535)
Q Consensus 384 ~~~~~l~~~~~~~-~-~~~~~l~~~~~~G~~G~k~g~GFY~y~~ 425 (535)
++++.+++.++++ . .|++++++|++.|++|+|||+|||+|++
T Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 9999999888843 3 3678999999999999999999999985
No 9
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-65 Score=462.06 Aligned_cols=280 Identities=36% Similarity=0.574 Sum_probs=264.8
Q ss_pred CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-----HHhhhccccccc
Q 009395 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-----FEKTISLLTGVL 219 (535)
Q Consensus 145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-----~~~~~~~i~~~~ 219 (535)
.+++.|+|||+|.||++||+..+.+|++|+++|++++.+.++.+.|.+.+.+..+++..+... ++..+++|+.++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999999999999999999999998888877665333 366788999999
Q ss_pred Ccc-cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEE
Q 009395 220 DYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV 298 (535)
Q Consensus 220 ~~~-~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv 298 (535)
|.+ .+.++|+|||++.|++++|+++|++|+..+++++|++||||++.+++++..+.+|.||.|+|||||+..|+|+|++
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi 168 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI 168 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence 885 4789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHH
Q 009395 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADL 376 (535)
Q Consensus 299 ~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~ 376 (535)
.++.||+|+......|.+.+||+++-++|.||||+||++.++++||+++++.|. +.+|||.+|+ |.|+||||||+.|.
T Consensus 169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy 248 (298)
T KOG2304|consen 169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY 248 (298)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 9999999999 99999999999999
Q ss_pred hchHHHHHHHHHHHHhCCCC--CccCccHHHHHHCCCCCccCCceeeeec
Q 009395 377 VGFGVAIATGMQFIENFPER--TYKSMIIPIMQEDKRAGETTRKGFYLYD 424 (535)
Q Consensus 377 ~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~~~~G~~G~k~g~GFY~y~ 424 (535)
+|||++.-+|+-|++.+++. +.|+|++.++|++|++|+|+|+|||+|.
T Consensus 249 vGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 249 VGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred hhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence 99999999999999999764 4599999999999999999999999983
No 10
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=7e-61 Score=476.96 Aligned_cols=279 Identities=33% Similarity=0.547 Sum_probs=269.2
Q ss_pred CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (535)
Q Consensus 145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (535)
++++||+|||+|.||++||..++.+|++|++||++++.++.+.+++.+.+++.+++|.++..+.+..+++++.+++++++
T Consensus 3 ~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 82 (286)
T PRK07819 3 DAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF 82 (286)
T ss_pred CCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999888999999999999889
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhc-CCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCC
Q 009395 225 KDVDMVIEAIIENVSLKQQIFADLEKYC-PPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (535)
Q Consensus 225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~-~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t 303 (535)
++||+|||||||++++|+++|+++++.+ ++++|++||||++++++++..+.+|+|++|+|||+|++.++++|++++..|
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T 162 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVT 162 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCC
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH-hcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchH
Q 009395 304 SPQVIVDLLDIGK-KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (535)
Q Consensus 304 s~e~~~~~~~l~~-~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld 380 (535)
++++++.+.+++. .+||.|++++|.|||++||++.++++||++++++|+ ++++||.+++ ++|||+|||+++|.+|+|
T Consensus 163 ~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gld 242 (286)
T PRK07819 163 SEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLD 242 (286)
T ss_pred CHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhccH
Confidence 9999999999988 599999999999999999999999999999999997 9999999999 999999999999999999
Q ss_pred HHHHHHHHHHHhCCCC-CccCccHHHHHHCCCCCccCCceeeee
Q 009395 381 VAIATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLY 423 (535)
Q Consensus 381 ~~~~~~~~l~~~~~~~-~~~~~~l~~~~~~G~~G~k~g~GFY~y 423 (535)
++.++++.+++.++++ +.|++++++|+++|++|+|+|+|||+|
T Consensus 243 ~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 243 TVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 9999999999999874 468899999999999999999999998
No 11
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=7.6e-57 Score=450.24 Aligned_cols=279 Identities=27% Similarity=0.445 Sum_probs=262.8
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHhhhcccccccCcc-c
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-FEKTISLLTGVLDYE-S 223 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~-~ 223 (535)
+++||+|||+|.||++||..++.+|++|++||++++.++.+.+.+.+......+.+.++..+ .+....+++.+++++ .
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 46899999999999999999999999999999999999999888888888888888887666 666678888888886 5
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t 303 (535)
+++||+||+|+|++.++|+++++++.+.+++++||+||+|+++++++++.+.+|.||+|+|||+|++.++++|+++++.|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCceEEeC-CcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchH
Q 009395 304 SPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (535)
Q Consensus 304 s~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld 380 (535)
++++++.+.++++.+|+.|+++. |.|||++||++.++++||++++++|+ +|++||++++ ++|+|+|||+++|.+|+|
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence 99999999999999999999985 99999999999999999999999997 9999999998 999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCc--cCccHHHHHHCCCCCccCCceeeeec
Q 009395 381 VAIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYD 424 (535)
Q Consensus 381 ~~~~~~~~l~~~~~~~~~--~~~~l~~~~~~G~~G~k~g~GFY~y~ 424 (535)
++.++++++++.++++++ |++++++|+++|++|+|+|+|||+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence 999999999999988753 78999999999999999999999994
No 12
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.3e-56 Score=447.26 Aligned_cols=281 Identities=29% Similarity=0.517 Sum_probs=267.0
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (535)
++||+|||+|.||.+||..++++|++|++||++++.++.+.+++...+...++.|.++..+.+....+++.++++ +.++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 468999999999999999999999999999999999999988888888888888999888777788888888888 4689
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCH
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~ 305 (535)
+||+||+|+|++.++|+.+++++.+.+++++|+++|+|+++++++++.+.+|.|++|+||++|++.++++|+++++.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHHH
Q 009395 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (535)
Q Consensus 306 e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~ 383 (535)
++++.++++++.+|+.+++++|.|||++||++.++++||++++++|+ ++++||.+++ ++|||+|||+++|.+|+|++.
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 240 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999 999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccCccHHHHHHCCCCCccCCceeeeecCCC
Q 009395 384 ATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (535)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~ 427 (535)
++++.+++.+++++.|++++.+|+++|++|+|+|+|||+|++++
T Consensus 241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 284 (288)
T PRK09260 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNRE 284 (288)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCCC
Confidence 99999999999888899999999999999999999999998754
No 13
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.5e-56 Score=443.32 Aligned_cols=278 Identities=35% Similarity=0.607 Sum_probs=265.9
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
+++||+|||+|.||.+||..++.+|++|+++|++++.++.+.+++++.++..++.|.++..+......+++.++++++++
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 81 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK 81 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 36799999999999999999999999999999999999999889999999999999888887777778888888888899
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCH
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~ 305 (535)
+||+||+|+||+..+|+++++++.++++++++++|+||+++++.+++.+.+|.|++|+|||+|++.++++|+++++.|++
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~ 161 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSD 161 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHHH
Q 009395 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (535)
Q Consensus 306 e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~ 383 (535)
++++.+.++++.+|+.|++++|.|||+.||++.++++||++++++|+ +|++||.+++ |+|||+|||+++|.+|+|.+.
T Consensus 162 e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 241 (282)
T PRK05808 162 ATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCL 241 (282)
T ss_pred HHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999 999999999999999999999
Q ss_pred HHHHHHHHhCCCC-CccCccHHHHHHCCCCCccCCceeeee
Q 009395 384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLY 423 (535)
Q Consensus 384 ~~~~~l~~~~~~~-~~~~~~l~~~~~~G~~G~k~g~GFY~y 423 (535)
++++.+++.++++ +.|++++++|+++|++|+|+|+|||+|
T Consensus 242 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 242 AIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence 9999999999874 458889999999999999999999998
No 14
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.1e-55 Score=442.89 Aligned_cols=279 Identities=32% Similarity=0.548 Sum_probs=262.1
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH---HHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA---NLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (535)
+++||+|||+|.||.+||..++++|++|++||++++.++.+.+++++ .+...++.|.++..+.+....++..+++++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 47899999999999999999999999999999999999988777665 356677888888888888888888888887
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCC
Q 009395 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQ 302 (535)
Q Consensus 223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ 302 (535)
.+++||+||+|+|++.++|+++++++.+.+++++|++||||+++++++++.+.+|.|++|+|||+|++.++++|+++++.
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 88999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchH
Q 009395 303 TSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (535)
Q Consensus 303 ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld 380 (535)
|++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||++++ ++|+|+|||+++|.+|+|
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999997 9999999998 999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCC-ccCccHHHHHHCCCCCccC-----Cceeeeec
Q 009395 381 VAIATGMQFIENFPERT-YKSMIIPIMQEDKRAGETT-----RKGFYLYD 424 (535)
Q Consensus 381 ~~~~~~~~l~~~~~~~~-~~~~~l~~~~~~G~~G~k~-----g~GFY~y~ 424 (535)
++.++++.+++.+++++ .|++++++|+++|++|+|| |+|||+|.
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y~ 291 (291)
T PRK06035 242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDYY 291 (291)
T ss_pred HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeecC
Confidence 99999999999998855 5788999999999999999 99999983
No 15
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=2.4e-55 Score=441.50 Aligned_cols=282 Identities=31% Similarity=0.554 Sum_probs=268.7
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
+++||+|||+|.||.+||..++.+|++|++||++++.++.+.+++++.+++.++.|.++..+.+..++++.++++++.++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999888888888888888888899
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCH
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~ 305 (535)
+||+||+||||++++|+.+++++.+.+++++||+||||+++++++++.+.++.+++|+||++|++.++++|+++++.|++
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHHH
Q 009395 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (535)
Q Consensus 306 e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~ 383 (535)
++++.+.++++.+|+.+++++|.|||++||++.++++||++++++|+ ++++||.+++ ++|||+|||+++|.+|+|++.
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~ 242 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL 242 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999 999999999999999999999
Q ss_pred HHHHHHHHhCCCC-CccCccHHHHHHCCCCCccCCceeeeecCCC
Q 009395 384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (535)
Q Consensus 384 ~~~~~l~~~~~~~-~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~ 427 (535)
++++.+++.++++ +.|++++.+|+++|++|+|+|+|||+|++++
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 287 (295)
T PLN02545 243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK 287 (295)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence 9999999999875 4688999999999999999999999998654
No 16
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.3e-55 Score=438.43 Aligned_cols=281 Identities=32% Similarity=0.528 Sum_probs=266.3
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
+++||+|||+|.||.+||..++++|++|++||++++.++.+.+++.+.+...++.|.++..+.+..+.+++.++++++++
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 82 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA 82 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc
Confidence 47899999999999999999999999999999999999998888888888888889888877777778888888888899
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCH
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~ 305 (535)
+||+||+|+|+++++|+.+++++.+.++++++++||||+++++++++.+.+|.|++|+||++|++.++++|++++..|++
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~ 162 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE 162 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHHH
Q 009395 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (535)
Q Consensus 306 e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~ 383 (535)
++++.+.++++.+|+.+++++|.|||++||++.++++|++.++++|+ ++++||.+++ ++|||+|||+++|.+|+|++.
T Consensus 163 ~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~ 242 (292)
T PRK07530 163 ATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCL 242 (292)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999998 9999999999 999999999999999999999
Q ss_pred HHHHHHHHhCCCC-CccCccHHHHHHCCCCCccCCceeeeecCC
Q 009395 384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDER 426 (535)
Q Consensus 384 ~~~~~l~~~~~~~-~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~ 426 (535)
++++.+++.++++ +.|++++.+|+++|++|+|+|+|||+|+++
T Consensus 243 ~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 243 SIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence 9999999998874 457889999999999999999999999754
No 17
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=7.8e-56 Score=430.67 Aligned_cols=356 Identities=40% Similarity=0.611 Sum_probs=323.6
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccCC
Q 009395 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237 (535)
Q Consensus 158 mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe~ 237 (535)
||++||..+..+|++|++.|.|...++.+..++...+.+.+.++.++..+.+....++..+.|+..+++||+|||++.|+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHh
Q 009395 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317 (535)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~~~ 317 (535)
+++|++++.+|++++++++|++||||+++++.+++.+..|++++|+|||.|++.++++|++.+..||..++..+.+....
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEeCCcccchhhhhHHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCChhHHHHHHHhchHHHHHHHHHHHHhCCCC
Q 009395 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVER-GTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (535)
Q Consensus 318 lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~-G~~~~~ID~a~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 396 (535)
.|+.|++|++++||.+||++.+++.++.++..+ |++|.++|.+...||||+|||++.|..|+|+..+....+...++++
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence 999999999999999999999999999999877 8999999999999999999999999999999877766655554433
Q ss_pred CccCccHHHHHHCCCCCccCCceeeeecCCCCCCCC-hhHHHHHHHHhhccCCcCCcccccCCHHHHHHHHHHHHHHHHH
Q 009395 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPD-PEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEAC 475 (535)
Q Consensus 397 ~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~ 475 (535)
+.+.|++.|+.|+|||+|||.|+++.+...+ .+..+.+.... .....+..+++++++|++.+++||++
T Consensus 241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~------~~~~~r~~~~ed~v~~~~~p~VnEal 309 (380)
T KOG1683|consen 241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLS------LTPNPRVADDEDFVEFLLSPFVNEAL 309 (380)
T ss_pred -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhc------cCCCcccCCHHHHHHHHhhHHHHHHH
Confidence 6889999999999999999999876433223 45555554332 11122457899999999999999999
Q ss_pred HHHhcCcCCChhHHHHHHHhccCCCCCcchhhhh---cCcchHHHHHHHHHh
Q 009395 476 RVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIH---RGFSKSSSCFKNLLC 524 (535)
Q Consensus 476 ~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~---~G~~~~~~~~~~~~~ 524 (535)
+|++||+..+++++|.+.++|+|||+++||||.+ .|+++++..+..++.
T Consensus 310 ~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~ 361 (380)
T KOG1683|consen 310 RCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS 361 (380)
T ss_pred HHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc
Confidence 9999999999999999999999999999999965 899999999988764
No 18
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.3e-53 Score=425.07 Aligned_cols=268 Identities=26% Similarity=0.393 Sum_probs=254.4
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHH-------HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC--c-ccccCC
Q 009395 158 MGSGIATALILSNYPVILKEVNEK-------FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--Y-ESFKDV 227 (535)
Q Consensus 158 mG~~iA~~l~~~G~~V~l~d~~~~-------~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~~~~a 227 (535)
||++||..++.+|++|+++|++++ .++++.+++.+.+++.+++|.++.++.+..+++|+++++ . +++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 467788899999999999999999988899999988764 2 568999
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHH
Q 009395 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQV 307 (535)
Q Consensus 228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~ 307 (535)
|+|||||||+.++|+.+|+++.+.+++++|++||||+++++++++.+.+|+|++|+|||+|++.++++|+++++.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---hhHHHHHHHhchHHH
Q 009395 308 IVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVGFGVA 382 (535)
Q Consensus 308 ~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p---~GPf~~~D~~Gld~~ 382 (535)
++.+.++++.+|+.+++++|.|||++||++.++++|++.++++|+ ++++||.+++ ++||| +|||+++|.+|+|++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999885 9999999999 99999 699999999999999
Q ss_pred HHHHHHHHHhCCC-CCccCccHHHHHHCCCCCccCCceeeeecC
Q 009395 383 IATGMQFIENFPE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDE 425 (535)
Q Consensus 383 ~~~~~~l~~~~~~-~~~~~~~l~~~~~~G~~G~k~g~GFY~y~~ 425 (535)
.++++.+++.+++ ++.|++++++|+++|++|+|+|+|||+|++
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 9999999998888 566889999999999999999999999965
No 19
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=6e-53 Score=421.95 Aligned_cols=277 Identities=22% Similarity=0.299 Sum_probs=247.8
Q ss_pred CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-c
Q 009395 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-S 223 (535)
Q Consensus 145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 223 (535)
++++||+|||+|.||++||..++.+|++|++||++++.++.+..++.+.+....+.| ++.. ...++++.+++++ .
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~~---~~~~~i~~~~~l~~a 80 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQG-LAPG---ASPARLRFVATIEAC 80 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CChh---hHHhhceecCCHHHH
Confidence 457899999999999999999999999999999999999998888888888888777 3332 2345777788884 5
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t 303 (535)
+++||+|||||||++++|+++|+++.+.+++++||+||||+++++++++.+.+|+|++|+|||||++.+++||+++++.|
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCceEEe-CCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---hhHHHHHHHh
Q 009395 304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV 377 (535)
Q Consensus 304 s~e~~~~~~~l~~~lGk~~i~v-~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p---~GPf~~~D~~ 377 (535)
++++++.+.+|++.+||.||++ +|.|||++||++.++++||++++++|+ |+++||++|+ |+|+| +|||+++|.+
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~ 240 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA 240 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence 9999999999999999999999 599999999999999999999999997 9999999999 99987 9999999999
Q ss_pred chHH-HHHHHHHHHHhCCCC---CccCccHHHHHH------CCCCCccCCceeeeecC
Q 009395 378 GFGV-AIATGMQFIENFPER---TYKSMIIPIMQE------DKRAGETTRKGFYLYDE 425 (535)
Q Consensus 378 Gld~-~~~~~~~l~~~~~~~---~~~~~~l~~~~~------~G~~G~k~g~GFY~y~~ 425 (535)
|+|. +.+.++++.+.+.+. ..++++...|++ ++.+|.++..+||.|.+
T Consensus 241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd 298 (321)
T PRK07066 241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD 298 (321)
T ss_pred ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9997 455556655554321 224557888887 78999999999999864
No 20
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.4e-46 Score=381.14 Aligned_cols=277 Identities=31% Similarity=0.535 Sum_probs=245.8
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (535)
+++||+|||+|.||++||..|+++|++|++||++++.++.+.+.+.+......+.+. ....+++++.+++++ .+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence 478999999999999999999999999999999999988877655443322222111 012234566666665 47
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCC
Q 009395 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (535)
Q Consensus 225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts 304 (535)
++||+||+|||++.+.++++++++.+.++++++|+|++|+++++++++.+.++.+++|+||++|+..++++++++++.++
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~ 157 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS 157 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence 89999999999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEeC-CcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---hhHHHHHHHhc
Q 009395 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVG 378 (535)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p---~GPf~~~D~~G 378 (535)
+++++.+.++++.+|+.+++++ +.|||++||++.++++||+.++++|. ++++||.+++ ++||| +|||+++|.+|
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G 237 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG 237 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence 9999999999999999999996 78999999999999999999999875 9999999998 99999 79999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCccCccHHHHHHCCCCCccCCceeeeecCCC
Q 009395 379 FGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (535)
Q Consensus 379 ld~~~~~~~~l~~~~~~~~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~ 427 (535)
+|++.++++.+++.+++++.|++++++|+++|++|+|+|+|||+|+++.
T Consensus 238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~~ 286 (311)
T PRK06130 238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPER 286 (311)
T ss_pred cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCCC
Confidence 9999999999999998888899999999999999999999999997643
No 21
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.6e-39 Score=328.21 Aligned_cols=264 Identities=24% Similarity=0.336 Sum_probs=243.8
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (535)
++++|+|||+|.||++||..|+++|++|++||++++.++.+..+++..++..++.|.++..+......++..+++++ .+
T Consensus 1 ~~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~ 80 (308)
T PRK06129 1 PMGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV 80 (308)
T ss_pred CCcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence 36789999999999999999999999999999999999999888888998899999988777778888888888885 57
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCC
Q 009395 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (535)
Q Consensus 225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts 304 (535)
++||+||+|+|++.++++.+++++.+.++++++++|+||+++++++++.+.++.++++.||++|++.++++|+++++.++
T Consensus 81 ~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~ 160 (308)
T PRK06129 81 ADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTA 160 (308)
T ss_pred CCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999889999999999999889999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEeC-CcccchhhhhHHHHHHHHHHHHHcC-CCHHHHHHHHH-hcCCC---hhHHHHHHHh-
Q 009395 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMP---MGPFRLADLV- 377 (535)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nri~~~~~~ea~~l~~~G-~~~~~ID~a~~-g~G~p---~GPf~~~D~~- 377 (535)
+++++.++++++.+|+.+++++ +.+||++||++.++++||+.++++| +|+++||++++ ++|++ +|||++.|..
T Consensus 161 ~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~ 240 (308)
T PRK06129 161 PATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNA 240 (308)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhccc
Confidence 9999999999999999999996 7899999999999999999999987 49999999999 89988 8999999987
Q ss_pred --chHHHHHHHHHHHHhCCCCC-ccCccHHHHHHC
Q 009395 378 --GFGVAIATGMQFIENFPERT-YKSMIIPIMQED 409 (535)
Q Consensus 378 --Gld~~~~~~~~l~~~~~~~~-~~~~~l~~~~~~ 409 (535)
|++........++..+.+.. .|+|++.+|+++
T Consensus 241 ~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~ 275 (308)
T PRK06129 241 PGGVADYAQRYGPMYRRMAAERGQPVPWDGELVAR 275 (308)
T ss_pred cccHHHHHHHHHHHHHhhccccCCCchhhHHHHHH
Confidence 89999999999998887754 478889888873
No 22
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=6.5e-38 Score=290.56 Aligned_cols=180 Identities=38% Similarity=0.648 Sum_probs=161.3
Q ss_pred eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009395 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (535)
||+|||+|.||.+||..++.+|++|++||++++.++.+.+++++.++..+++|.+++.+.+..+++++++++++++.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHH
Q 009395 229 MVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVI 308 (535)
Q Consensus 229 lVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~ 308 (535)
+||||+||++++|+++|++|++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++|+++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEeCCc
Q 009395 309 VDLLDIGKKIKKTPIVVGNC 328 (535)
Q Consensus 309 ~~~~~l~~~lGk~~i~v~d~ 328 (535)
+.+..|++.+||.|++++|+
T Consensus 161 ~~~~~~~~~~gk~pv~v~D~ 180 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKDT 180 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES-
T ss_pred HHHHHHHHHCCCEEEEecCC
Confidence 99999999999999999773
No 23
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=100.00 E-value=7.5e-36 Score=319.03 Aligned_cols=244 Identities=23% Similarity=0.316 Sum_probs=205.6
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (535)
.++||+|||+|+||++||..|+++|++|++||+++++++...+.+..... .. +.+.... ....++++.+++++ .+
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~-~~--~~l~~~~-~~~~g~i~~~~~~~ea~ 78 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAER-AY--AMLTDAP-LPPEGRLTFCASLAEAV 78 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHH-HH--hhhccch-hhhhhceEeeCCHHHHh
Confidence 36799999999999999999999999999999999988765432221111 11 1111110 01123566677774 68
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCC
Q 009395 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (535)
Q Consensus 225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts 304 (535)
++||+||+|+||+.++|+++++++.+.+++++||+|+||+++++++++.+..+.++++.|||+|++.++++|+++++.|+
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEeC-CcccchhhhhHHHHHHHHHHHHHcC-CCHHHHHHHHH-hcCCC---hhHHHHHHHhc
Q 009395 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMP---MGPFRLADLVG 378 (535)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nri~~~~~~ea~~l~~~G-~~~~~ID~a~~-g~G~p---~GPf~~~D~~G 378 (535)
+++++.++++++.+|+.+++++ +.+||+.||++.++++||+.|+++| +|+++||++++ ++|++ +|||++.|..|
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g 238 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG 238 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence 9999999999999999999996 8999999999999999999999987 59999999999 87764 89999999998
Q ss_pred hH-HHHHHHHHHHHhC
Q 009395 379 FG-VAIATGMQFIENF 393 (535)
Q Consensus 379 ld-~~~~~~~~l~~~~ 393 (535)
++ .+.+.++++.+.+
T Consensus 239 ~~~g~~~~~~~~~~~~ 254 (495)
T PRK07531 239 GEAGMRHFLAQFGPCL 254 (495)
T ss_pred cHHHHHHHHHHhchhh
Confidence 54 5556666655544
No 24
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=7.2e-34 Score=257.93 Aligned_cols=234 Identities=27% Similarity=0.449 Sum_probs=211.4
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHhhhcccccccCccc-c
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KFEKTISLLTGVLDYES-F 224 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~-~ 224 (535)
..||+|+|.|.+|++||..++..||+|.+||+.++++.-+.+.+++.+.++-+.|.+... .+++.+..|+.++++++ +
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~v 82 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELV 82 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHH
Confidence 568999999999999999999999999999999999999999888888776665443211 23456678888999854 7
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCC
Q 009395 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (535)
Q Consensus 225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts 304 (535)
++|=.|.||+||++.+|+.+++++++.+.+.+|++|+||++.++.+.+.+.+.++++-.||.||+...|++|++|.+.|+
T Consensus 83 k~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwTs 162 (313)
T KOG2305|consen 83 KGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWTS 162 (313)
T ss_pred hhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCCC
Confidence 89999999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEeC-CcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---hhHHHHHHHhc
Q 009395 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVG 378 (535)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p---~GPf~~~D~~G 378 (535)
++++++.+++.+.+|..|+... +..||.+||+.++++||.-+++..|+ +..|+|.+|. |+|.. .||+|.+.+.-
T Consensus 163 p~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~HLNA 242 (313)
T KOG2305|consen 163 PDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAHLNA 242 (313)
T ss_pred hhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhhcCc
Confidence 9999999999999999998775 78999999999999999999999997 9999999999 99976 59999987764
Q ss_pred hH
Q 009395 379 FG 380 (535)
Q Consensus 379 ld 380 (535)
-.
T Consensus 243 ~G 244 (313)
T KOG2305|consen 243 EG 244 (313)
T ss_pred HH
Confidence 33
No 25
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.95 E-value=3.8e-27 Score=251.53 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=151.3
Q ss_pred hcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc
Q 009395 251 YCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (535)
Q Consensus 251 ~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G 330 (535)
...+++++++..++.+.+..+....+|+|++|+|||+|++.++++|++++..|++++++.+.++++.+||.|++++|.||
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G 416 (507)
T PRK08268 337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG 416 (507)
T ss_pred cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence 34567777777777777777766678999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHHHHHHHHHHHhCCC-CCccCccHHHHH
Q 009395 331 FAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQ 407 (535)
Q Consensus 331 ~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~~ 407 (535)
|++||++.+++|||++++++|+ +++|||.+|+ |+|||+|||+++|.+|+|.++++++.++..+++ ++.|++++++|+
T Consensus 417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v 496 (507)
T PRK08268 417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA 496 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence 9999999999999999999998 9999999999 999999999999999999999999999999996 566889999999
Q ss_pred HCCCCCccCCceeee
Q 009395 408 EDKRAGETTRKGFYL 422 (535)
Q Consensus 408 ~~G~~G~k~g~GFY~ 422 (535)
++| ..||.
T Consensus 497 ~~G-------~~~~~ 504 (507)
T PRK08268 497 ALG-------LSLRS 504 (507)
T ss_pred HcC-------CCcCC
Confidence 986 56764
No 26
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.92 E-value=1.3e-25 Score=187.32 Aligned_cols=94 Identities=40% Similarity=0.610 Sum_probs=87.6
Q ss_pred cchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHHHHHHHHHHHhCCCCC-ccCccHHHH
Q 009395 330 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPERT-YKSMIIPIM 406 (535)
Q Consensus 330 G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~~-~~~~~l~~~ 406 (535)
||++||++.++++||++++++|+ ||++||.+++ ++|||+|||+++|.+|+|++.++++++++.++++. .|++++++|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m 80 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM 80 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence 89999999999999999999996 9999999999 89999999999999999999999999999999884 468999999
Q ss_pred HHCCCCCccCCceeeee
Q 009395 407 QEDKRAGETTRKGFYLY 423 (535)
Q Consensus 407 ~~~G~~G~k~g~GFY~y 423 (535)
+++|++|+|+|+|||+|
T Consensus 81 v~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 81 VEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHTT--BGGGTBSSSBE
T ss_pred HHCCCCcCcCCCcceeC
Confidence 99999999999999998
No 27
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.89 E-value=4e-21 Score=204.76 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=112.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhH
Q 009395 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGP 370 (535)
Q Consensus 293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GP 370 (535)
..+|++++..|++++++.+.++++.+||.|++++|.|||++||++++++|||++++++|+ +++|||.+|+ ++|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 478999999999999999999999999999999999999999999999999999999998 8999999999 99999999
Q ss_pred HHHHHHhchHHHHHHHHHHHHhCCC-CCccCccHHHHHHCC
Q 009395 371 FRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQEDK 410 (535)
Q Consensus 371 f~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~G 410 (535)
|+|+|.+|+|++++++++|++.+++ ++.|+++|++|+..|
T Consensus 458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g 498 (503)
T TIGR02279 458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLG 498 (503)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcC
Confidence 9999999999999999999999995 556889999999987
No 28
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.77 E-value=1.1e-17 Score=163.52 Aligned_cols=186 Identities=21% Similarity=0.261 Sum_probs=140.6
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL-EAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~-~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
+||+|||+|.||.+||.+|.++||+|++||+++++. +.+. ..|.. ...+..+.+++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~-----------~~Ga~------------~a~s~~eaa~~ 57 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLA-----------AAGAT------------VAASPAEAAAE 57 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHH-----------HcCCc------------ccCCHHHHHHh
Confidence 489999999999999999999999999999999983 3322 23321 12333477899
Q ss_pred CCEEEEeccCChHHHHHHHH--HHHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEeeccc-CCCCC-------CC
Q 009395 227 VDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV-------MP 293 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~-~P~~~-------~~ 293 (535)
||+||.|||++.++...++. .+.+.+++++++++ +||++++ ++++.+. -.|.+|+ .|++. +.
T Consensus 58 aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~Gt 132 (286)
T COG2084 58 ADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAGT 132 (286)
T ss_pred CCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhCc
Confidence 99999999988887766663 58888899998875 5556665 3444432 2366776 36543 34
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCc-ccc---hhhhhHHH----HHHHHHHHHH-cCCCHHHHHHHHH-h
Q 009395 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-K 363 (535)
Q Consensus 294 lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~-~G~---i~nri~~~----~~~ea~~l~~-~G~~~~~ID~a~~-g 363 (535)
|..++.+ +++.+++++++++.+|+.++++++. .|. ++|+++.. .+.||+.+.+ .|++++.+..+++ +
T Consensus 133 LtimvGG---~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~ 209 (286)
T COG2084 133 LTIMVGG---DAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGG 209 (286)
T ss_pred eEEEeCC---CHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Confidence 5545555 7999999999999999999999864 443 67888764 3689999987 6999999999998 5
Q ss_pred c
Q 009395 364 F 364 (535)
Q Consensus 364 ~ 364 (535)
.
T Consensus 210 ~ 210 (286)
T COG2084 210 A 210 (286)
T ss_pred c
Confidence 3
No 29
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.71 E-value=2.4e-16 Score=158.33 Aligned_cols=187 Identities=17% Similarity=0.296 Sum_probs=135.0
Q ss_pred eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009395 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (535)
||+|||+|.||.+||..|+++|++|++||+++++++.+. +.|.. ..++..+.+++||
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~~------------~~~~~~~~~~~aD 57 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGAV------------TAETARQVTEQAD 57 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCCc------------ccCCHHHHHhcCC
Confidence 599999999999999999999999999999998876543 22321 1122235678999
Q ss_pred EEEEeccCChHHHHHHHH--HHHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEeecccC-CCC------CCCEEE
Q 009395 229 MVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAH------VMPLLE 296 (535)
Q Consensus 229 lVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~-P~~------~~~lve 296 (535)
+||+|+|++..++..++. .+.+.+++++++++ +|+.++. ++.+.+... |+||+. |+. ..+.+.
T Consensus 58 ivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~ 132 (291)
T TIGR01505 58 VIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS 132 (291)
T ss_pred EEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence 999999987776655543 35667788888874 5555553 455555321 445443 322 123334
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcCCceEEeCC-ccc---chhhhhHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 009395 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KFG 365 (535)
Q Consensus 297 iv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d-~~G---~i~nri~~~~----~~ea~~l~~-~G~~~~~ID~a~~-g~G 365 (535)
++.+ .+++.++.++++++.+|+.++++++ .+| .++|+++.+. ++|++.+.+ .|++++++.+++. +.+
T Consensus 133 i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 133 IMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 5544 2689999999999999999999975 455 4778887754 799999986 6899999999998 544
No 30
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.70 E-value=1.9e-15 Score=150.67 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=120.3
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (535)
+||+|||+|.||+++|..|.++|++|++||++++.++.+. +.|.++ ..+++.+.+++|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~a 58 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI-----------ERGLVD-----------EASTDLSLLKDC 58 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------cccCCHhHhcCC
Confidence 3799999999999999999999999999999998876543 223221 123344567899
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCC------------CCCEE
Q 009395 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH------------VMPLL 295 (535)
Q Consensus 228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~------------~~~lv 295 (535)
|+||+|+|++ ...++++++.+.++++++++ +++++....+........+|+++||+.+.. .+..+
T Consensus 59 DlVilavp~~--~~~~~~~~l~~~l~~~~ii~-d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~ 135 (279)
T PRK07417 59 DLVILALPIG--LLLPPSEQLIPALPPEAIVT-DVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPW 135 (279)
T ss_pred CEEEEcCCHH--HHHHHHHHHHHhCCCCcEEE-eCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcE
Confidence 9999999965 34577899999888888775 455566665555544455799999986432 24566
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 296 eiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~ 326 (535)
.+++++.++++.++.+.++++.+|..++.++
T Consensus 136 ~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~ 166 (279)
T PRK07417 136 VLTPTENTDLNALAIVEELAVSLGSKIYTAD 166 (279)
T ss_pred EEccCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 7889999999999999999999999998887
No 31
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.67 E-value=2.1e-15 Score=151.90 Aligned_cols=188 Identities=18% Similarity=0.280 Sum_probs=135.4
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (535)
+++|+|||+|.||.++|..+++.|++|++||++++.++... +.|. ..++++ +.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~ 57 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAGA-------------ETASTAKAVAE 57 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC-------------eecCCHHHHHh
Confidence 35899999999999999999999999999999998866432 1221 123344 3468
Q ss_pred CCCEEEEeccCChHHHHHHH--HHHHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEeecccC-CCCC------CC
Q 009395 226 DVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHV------MP 293 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~-P~~~------~~ 293 (535)
+||+||+|+|+...++..++ ..+.+.++++++++ ++|+.++. ++++.+... |.||+. |+.. .+
T Consensus 58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g 132 (296)
T PRK11559 58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDG 132 (296)
T ss_pred cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhC
Confidence 99999999998776655544 34677788889887 45555554 455544321 566654 3221 13
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCC-cccch---hhhhHHH----HHHHHHHHHH-cCCCHHHHHHHHH-h
Q 009395 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFA---VNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-K 363 (535)
Q Consensus 294 lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d-~~G~i---~nri~~~----~~~ea~~l~~-~G~~~~~ID~a~~-g 363 (535)
.++++.+. +++.++.+.++++.+|+.++++++ .+|+. +|+++.+ .++|++.+.+ .|+++++++++++ +
T Consensus 133 ~l~i~~gg--~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~ 210 (296)
T PRK11559 133 TLSVMVGG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGG 210 (296)
T ss_pred cEEEEECC--CHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 34455442 688999999999999999999974 46664 6776654 4799999987 6899999999987 4
Q ss_pred cC
Q 009395 364 FG 365 (535)
Q Consensus 364 ~G 365 (535)
++
T Consensus 211 ~~ 212 (296)
T PRK11559 211 LA 212 (296)
T ss_pred cc
Confidence 43
No 32
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.64 E-value=1.6e-14 Score=143.21 Aligned_cols=185 Identities=18% Similarity=0.139 Sum_probs=135.8
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 009395 148 KKVAILGGGLMGSGIATALILSNY----PVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (535)
+||+|||+|.||.+|+..|+++|+ +|++| |+++++.+.+. +.| +...++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~ 56 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLG-------------VKTAASNT 56 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcC-------------CEEeCChH
Confidence 479999999999999999999998 89999 99988765432 122 1122333
Q ss_pred ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCE-EEEEeC
Q 009395 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL-LEIVRT 300 (535)
Q Consensus 222 ~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~l-veiv~~ 300 (535)
+.+++||+||.|++ ++...+++.++.+.++++++++|.+++++++.+.+..+.. ++++.+|+.|...... ..++.+
T Consensus 57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~ 133 (266)
T PLN02688 57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG 133 (266)
T ss_pred HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence 45789999999996 4557888888888888888888999999999998877544 7899999888765433 445677
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEeCCc-----ccchh--hhhHHHH---HHHHHHHHHcCCCHHHHHHHHH
Q 009395 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC-----TGFAV--NRMFFPY---TQAAFLLVERGTDLYLIDRAIT 362 (535)
Q Consensus 301 ~~ts~e~~~~~~~l~~~lGk~~i~v~d~-----~G~i~--nri~~~~---~~ea~~l~~~G~~~~~ID~a~~ 362 (535)
..++++..+.++++++.+|. ++++++. -|... ..+++.+ +.|+ ....|+++++..+++.
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea--~~~~Gl~~~~a~~~~~ 202 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADG--GVAAGLPRDVALSLAA 202 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHH--HHHcCCCHHHHHHHHH
Confidence 78899999999999999999 7776531 01100 1112111 2333 3457999999888876
No 33
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.64 E-value=1.4e-14 Score=138.92 Aligned_cols=189 Identities=20% Similarity=0.222 Sum_probs=136.8
Q ss_pred CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (535)
Q Consensus 145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (535)
.+.++|++||+|.||.+|+.+|.++||+|++|||+.++++... +.|.. ...++.|..
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~-----------~~Ga~------------v~~sPaeVa 89 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQ-----------EAGAR------------VANSPAEVA 89 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHH-----------Hhchh------------hhCCHHHHH
Confidence 3568999999999999999999999999999999999887654 33421 123455778
Q ss_pred cCCCEEEEeccCChHHHHHHHHH--HHhhcCCCceeeecCCcCcHH---HHHhhcCC-CCcEEeecccCCCCC------C
Q 009395 225 KDVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERTYS-KDRIVGAHFFSPAHV------M 292 (535)
Q Consensus 225 ~~aDlVI~avpe~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~-~~r~ig~h~~~P~~~------~ 292 (535)
++||+||.+||....++..++.. +.+.++++......+||+++. +|++.+.. ..+++- .|++. .
T Consensus 90 e~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vD----APVSGg~~~A~~ 165 (327)
T KOG0409|consen 90 EDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVD----APVSGGVKGAEE 165 (327)
T ss_pred hhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEe----ccccCCchhhhc
Confidence 99999999999888877776653 344444544332345566553 66665532 234433 35543 2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCc-cc---chhhhhHHHH----HHHHHHHHH-cCCCHHHHHHHHH
Q 009395 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT 362 (535)
Q Consensus 293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~-~G---~i~nri~~~~----~~ea~~l~~-~G~~~~~ID~a~~ 362 (535)
..+.++.+ .+++.++.+.++++.+||+.+.++.. .| -+.|+|+.+. +.|++.+.+ .|+|+..+-.++.
T Consensus 166 G~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln 242 (327)
T KOG0409|consen 166 GTLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILN 242 (327)
T ss_pred CeEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 34445555 47999999999999999999999853 34 3678887653 689999976 7999999999887
No 34
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.63 E-value=2.7e-14 Score=141.32 Aligned_cols=153 Identities=18% Similarity=0.227 Sum_probs=124.2
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009395 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (535)
+||+|||+|+||.+|+..|.++|+ +|+++|+++++++.+.+. .| +..+++. +
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e 59 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNE 59 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHH
Confidence 379999999999999999999885 699999999887654310 12 1122333 4
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEE-EEeCC
Q 009395 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTN 301 (535)
Q Consensus 223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~~~ 301 (535)
.+.+||+||.|+++ ....++++++.+.++++.+++|...++++++|.+.++.+.+++..+|+.|+..+..+. +.+++
T Consensus 60 ~~~~aDiIiLavkP--~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~ 137 (272)
T PRK12491 60 VANSADILILSIKP--DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE 137 (272)
T ss_pred HHhhCCEEEEEeCh--HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence 46899999999984 5678899999988888899999999999999999987666899999999987765554 45788
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEeC
Q 009395 302 QTSPQVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 302 ~ts~e~~~~~~~l~~~lGk~~i~v~ 326 (535)
.++++..+.+..+|..+|+. +.+.
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~-~~~~ 161 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQT-EVVN 161 (272)
T ss_pred CCCHHHHHHHHHHHHcCCCE-EEEc
Confidence 88999999999999999987 4444
No 35
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.61 E-value=1.8e-14 Score=149.03 Aligned_cols=171 Identities=21% Similarity=0.233 Sum_probs=122.8
Q ss_pred CcceEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395 146 RVKKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (535)
Q Consensus 146 ~~~kV~vIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (535)
.+++|+||| +|.||+++|..|..+|++|++||+++.. . ..+.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~----------------------------------~~~~~ 140 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R----------------------------------AEDIL 140 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h----------------------------------HHHHH
Confidence 467899999 8999999999999999999999986310 0 00235
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhcCCCCcEEeecccCCCCCCCEEE--EEeC
Q 009395 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHVMPLLE--IVRT 300 (535)
Q Consensus 225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve--iv~~ 300 (535)
++||+||+|+|++. ..++++++.+ +++++||++++|+. ++..+.+... .+|+|.||+.++....+.. ++..
T Consensus 141 ~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~ 215 (374)
T PRK11199 141 ADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC 215 (374)
T ss_pred hcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence 68999999999764 5788899988 89999999998853 4556665543 3699999998765432221 3445
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEeC-Ccccchhhhh--HH--HHHHHHHHHHHcCCCHHHH
Q 009395 301 NQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRM--FF--PYTQAAFLLVERGTDLYLI 357 (535)
Q Consensus 301 ~~ts~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nri--~~--~~~~ea~~l~~~G~~~~~I 357 (535)
+.++++.++.+.++++.+|..++.++ +.+..++..+ +. ..+.++..+.+.+.+++++
T Consensus 216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~ 277 (374)
T PRK11199 216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL 277 (374)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 56788899999999999999999987 3344333222 11 1234555555556665554
No 36
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.60 E-value=4.2e-14 Score=141.09 Aligned_cols=190 Identities=15% Similarity=0.170 Sum_probs=135.8
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395 146 RVKKVAILGGGLMGSGIATALILSN----YPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (535)
+.+||+|||+|.||.+|+..|+++| ++|+++|++++ .++.... +.| +..+.+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~ 58 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHN 58 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCC
Confidence 3568999999999999999999998 78999999754 4433221 011 122233
Q ss_pred c-ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCC-CCEEEEE
Q 009395 221 Y-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-MPLLEIV 298 (535)
Q Consensus 221 ~-~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~-~~lveiv 298 (535)
. +.+.+||+||.|||++ ...+++.++.+.+.++++|+|..++++++.+.+.++...++++.||+.|... ..+..++
T Consensus 59 ~~e~~~~aDvVilav~p~--~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~ 136 (279)
T PRK07679 59 KKELLTDANILFLAMKPK--DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAIS 136 (279)
T ss_pred HHHHHhcCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEe
Confidence 3 4468999999999843 4567788888888888899998899999999887765568999999877654 4455566
Q ss_pred eCCCCCHHHHHHHHHHHHhcCCceEEeCCc--c---cchh--hhhHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 009395 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNC--T---GFAV--NRMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (535)
Q Consensus 299 ~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~--~---G~i~--nri~~~~~~ea~~--l~~~G~~~~~ID~a~~ 362 (535)
+++..+++..+.++++++.+|+.. ++.+. . |... .. +...+.|++. ....|+++++..+++.
T Consensus 137 ~~~~~~~~~~~~v~~l~~~~G~~~-~v~e~~~~~~~a~~Gsgpa-~~~~~~eal~e~~~~~Gl~~~~a~~~~~ 207 (279)
T PRK07679 137 PSKHATAEHIQTAKALFETIGLVS-VVEEEDMHAVTALSGSGPA-YIYYVVEAMEKAAKKIGLKEDVAKSLIL 207 (279)
T ss_pred eCCCCCHHHHHHHHHHHHhCCcEE-EeCHHHhhhHHHhhcCHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 888889999999999999999844 44321 1 1000 01 1223344433 3457899998888775
No 37
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.59 E-value=8.3e-14 Score=139.99 Aligned_cols=187 Identities=17% Similarity=0.184 Sum_probs=127.7
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (535)
+||+|||+|.||.+||..|+++|++|++||+++++.+... +.|. ...++. +.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~ 57 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALV-----------DKGA-------------TPAASPAQAAAG 57 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCC-------------cccCCHHHHHhc
Confidence 5899999999999999999999999999999999876543 1221 112233 45789
Q ss_pred CCEEEEeccCChHHHHHHHH--HHHhhcCCCceeeecCCcCcHH---HHHhhcC-CCCcEEeecccCC---CCCCCEEEE
Q 009395 227 VDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFSP---AHVMPLLEI 297 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~P---~~~~~lvei 297 (535)
||+||.|+|++..++..+.. .+.+.++++++++ ++|+.++. ++++.+. ...+|+...-... ...+.++.+
T Consensus 58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvi-d~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~ 136 (296)
T PRK15461 58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVI-DMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLL 136 (296)
T ss_pred CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEE
Confidence 99999999987655544332 3566677888775 55666554 4444332 2233333211111 112345545
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCceEEeCCc-ccc---hhhhhHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009395 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT 362 (535)
Q Consensus 298 v~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~-~G~---i~nri~~----~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (535)
+.+ +++.++.++++++.+|+.++++++. .|. ++|+++. ..+.|++.+.+ .|++++.+-.++.
T Consensus 137 ~gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~ 207 (296)
T PRK15461 137 AGG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMS 207 (296)
T ss_pred ECC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 444 7899999999999999999999853 222 4565443 34689998876 6999999888776
No 38
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.57 E-value=2.3e-13 Score=134.93 Aligned_cols=189 Identities=18% Similarity=0.178 Sum_probs=134.7
Q ss_pred cceEEEEeCChhhHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009395 147 VKKVAILGGGLMGSGIATALILSN---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (535)
+++|+|||+|.||.+++..+.++| ++|.+||++++..+...+. .| +..+++. +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEE----------YG-------------VRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHh----------cC-------------CeecCChHH
Confidence 468999999999999999999999 7899999998876544321 01 1122233 3
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEE-EEEeCC
Q 009395 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL-EIVRTN 301 (535)
Q Consensus 223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lv-eiv~~~ 301 (535)
.+.+||+||+|+|. ....++++++.+.+ +++|+|.+++++.+.+...++...+++..||+.|......+ .++++.
T Consensus 59 ~~~~advVil~v~~--~~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVKP--QVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcCH--HHHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 46789999999974 45678888887766 46778889999999998887666789999999887655444 466888
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEeCCc-c-cch-hh----hhHHHHHHHHHHH-HHcCCCHHHHHHHHH
Q 009395 302 QTSPQVIVDLLDIGKKIKKTPIVVGNC-T-GFA-VN----RMFFPYTQAAFLL-VERGTDLYLIDRAIT 362 (535)
Q Consensus 302 ~ts~e~~~~~~~l~~~lGk~~i~v~d~-~-G~i-~n----ri~~~~~~ea~~l-~~~G~~~~~ID~a~~ 362 (535)
.++++..+.++.+++.+|..+.+..+. . ... +. ..++.++...... ...|+++++..+++.
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~ 203 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAA 203 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 899999999999999999744443221 1 111 11 1222233333333 347899988777665
No 39
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.55 E-value=1.7e-13 Score=141.42 Aligned_cols=166 Identities=19% Similarity=0.206 Sum_probs=119.9
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (535)
++|+|||+|.||++||..|.++|++|.+|+++++..+... ....+..+ ..++++ +.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~---------a~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLAR---------ALGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHH---------HhcCCCCc-----------ccccCHHHHhcC
Confidence 4799999999999999999999999999999877543221 01122211 112333 34689
Q ss_pred CCEEEEeccCChHHHHHHHHHHHh-hcCCCceeeecCCcC--cHHHHHhhcCCCCcEEeecccCCCC------------C
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------V 291 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~-~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~------------~ 291 (535)
||+||+|+|++ ...++++++.+ .++++++|++.+|+. .++.+...++...+|++.||+.... .
T Consensus 61 aDlVilavP~~--~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVPVD--ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCCHH--HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 99999999964 56789999987 478888887655543 2344455445567999999985431 2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeC-Ccccchhhh
Q 009395 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNR 335 (535)
Q Consensus 292 ~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nr 335 (535)
+..+.+++++.++++.++.+.++++.+|..++.+. +.+..++..
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~ 183 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVAL 183 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhH
Confidence 34566888888999999999999999999998886 334444443
No 40
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.54 E-value=2.6e-13 Score=135.89 Aligned_cols=185 Identities=15% Similarity=0.175 Sum_probs=126.8
Q ss_pred eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009395 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (535)
||+|||+|.||.+||..|.++|++|++||+++. .+.. .+.|. ....+..+.+++||
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~------------~~~~s~~~~~~~ad 57 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGA------------VSVETARQVTEASD 57 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCC------------eecCCHHHHHhcCC
Confidence 799999999999999999999999999999874 2221 12221 11122334568999
Q ss_pred EEEEeccCChHHHHHHHH--HHHhhcCCCceeeecCCcCcHH---HHHhhc-CCCCcEEeecccCC----CCCCCEEEEE
Q 009395 229 MVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERT-YSKDRIVGAHFFSP----AHVMPLLEIV 298 (535)
Q Consensus 229 lVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~-~~~~r~ig~h~~~P----~~~~~lveiv 298 (535)
+||.|||++..+...++. .+.+.+.++.+++. +||+++. ++++.+ ....+|+. +|+.. +..+.+..++
T Consensus 58 vVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd-~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l~~~~ 135 (292)
T PRK15059 58 IIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVD-MSSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTLSIMV 135 (292)
T ss_pred EEEEeCCChHHHHHHHcCCcchhccCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcEEEEE
Confidence 999999987666554443 25555677887764 5566655 344443 23345555 34432 1224555555
Q ss_pred eCCCCCHHHHHHHHHHHHhcCCceEEeCCc-ccc---hhhhhHHH----HHHHHHHHHH-cCCCHHHHHHHHH
Q 009395 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT 362 (535)
Q Consensus 299 ~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~-~G~---i~nri~~~----~~~ea~~l~~-~G~~~~~ID~a~~ 362 (535)
.| +++.++.++++++.+|+..+++++. .|. ++|+++.. .+.|++.+.+ .|++++.+-+++.
T Consensus 136 gG---~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~ 205 (292)
T PRK15059 136 GG---DEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALM 205 (292)
T ss_pred cC---CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 55 6899999999999999999999863 332 45666543 3789998876 6999999888776
No 41
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.54 E-value=1.6e-13 Score=137.55 Aligned_cols=181 Identities=20% Similarity=0.247 Sum_probs=129.2
Q ss_pred EEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCCCEE
Q 009395 152 ILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMV 230 (535)
Q Consensus 152 vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlV 230 (535)
|||+|.||.+||..|+++|++|++||+++++++... +.|. ..+++. +.+++||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~-------------~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAGA-------------QAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcCC-------------eecCCHHHHHhcCCEE
Confidence 689999999999999999999999999998876543 1221 122233 457899999
Q ss_pred EEeccCChHHHHHHH---HHHHhhcCCCceeeecCCcCcHHH---HHhhcCCCCcEEeecccC-CCC-------CCCEEE
Q 009395 231 IEAIIENVSLKQQIF---ADLEKYCPPHCILASNTSTIDLNL---IGERTYSKDRIVGAHFFS-PAH-------VMPLLE 296 (535)
Q Consensus 231 I~avpe~~~~k~~v~---~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~~r~ig~h~~~-P~~-------~~~lve 296 (535)
|.|||.+..+ +.++ ..+.+.++++.++++ +||++++. +++.+.. .|.+|.. |+. .+.+..
T Consensus 57 il~vp~~~~~-~~v~~g~~~l~~~~~~g~~vid-~st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~ 130 (288)
T TIGR01692 57 ITMLPAGQHV-ISVYSGDEGILPKVAKGSLLID-CSTIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTF 130 (288)
T ss_pred EEeCCChHHH-HHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEE
Confidence 9999975544 4555 567777888887764 55676653 3333321 2444442 333 245555
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcCCceEEeCC-cccc---hhhhhHHH----HHHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 009395 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-KFG 365 (535)
Q Consensus 297 iv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d-~~G~---i~nri~~~----~~~ea~~l~~-~G~~~~~ID~a~~-g~G 365 (535)
++.+ +++.++.++++++.+|+.++++++ ..|. ++|+++.. .++|++.+.+ .|++++++.+++. +.|
T Consensus 131 ~~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 131 MVGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred EECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 5555 578899999999999999999986 4454 56666543 3789999986 6899999999988 554
No 42
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.53 E-value=5.6e-13 Score=132.71 Aligned_cols=151 Identities=19% Similarity=0.212 Sum_probs=110.7
Q ss_pred eEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 149 KVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
||+|||+|.||+++|..|.++|+ +|++||++++.++.+. +.|... ...+.+++.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~~~------------~~~~~~~~~~ 58 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGLVD------------EIVSFEELKK 58 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCCCc------------ccCCHHHHhc
Confidence 79999999999999999999996 7899999998766542 223211 1223334556
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcC--CCCcEEeecccCC------CC------CC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY--SKDRIVGAHFFSP------AH------VM 292 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~--~~~r~ig~h~~~P------~~------~~ 292 (535)
||+||.|+|.+ ...+++.++.+ ++++++|++.+|+. ..+.+.+. .+.+|++.||+.+ .. .+
T Consensus 59 aD~Vilavp~~--~~~~~~~~l~~-l~~~~iv~d~gs~k--~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g 133 (275)
T PRK08507 59 CDVIFLAIPVD--AIIEILPKLLD-IKENTTIIDLGSTK--AKIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEG 133 (275)
T ss_pred CCEEEEeCcHH--HHHHHHHHHhc-cCCCCEEEECccch--HHHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCC
Confidence 99999999854 45677888888 88898887755532 22222221 2357999999853 21 24
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (535)
Q Consensus 293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d 327 (535)
..+.+++.+.++++.++.+.++++.+|..++.++.
T Consensus 134 ~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 134 KVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 56778888888999999999999999999998873
No 43
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.52 E-value=7e-13 Score=130.61 Aligned_cols=156 Identities=18% Similarity=0.229 Sum_probs=118.7
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC--cc
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--YE 222 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~ 222 (535)
.++|+|+|+|.||+++|+.+..+|+.|.+++++.. .++.+. +.|.... .+.+ .+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~-----------~lgv~d~-----------~~~~~~~~ 60 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL-----------ELGVIDE-----------LTVAGLAE 60 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh-----------hcCcccc-----------cccchhhh
Confidence 46899999999999999999999998877666544 333221 2332221 1122 35
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhcCCCCcEEeecccCCCC------CCCE
Q 009395 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------VMPL 294 (535)
Q Consensus 223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~------~~~l 294 (535)
.+..+|+||.||| .....++++++.+.++++++|++.+|+. +++.+....+...+|+|.||+..++ ....
T Consensus 61 ~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~ 138 (279)
T COG0287 61 AAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV 138 (279)
T ss_pred hcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence 5788999999998 4566789999999999999999988875 3455555553322899999997662 2466
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 295 veiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~ 326 (535)
+.++|++.++.+.++.+.++++.+|..++.+.
T Consensus 139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~ 170 (279)
T COG0287 139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMD 170 (279)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 77889998999999999999999998888886
No 44
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.51 E-value=8e-13 Score=139.38 Aligned_cols=154 Identities=19% Similarity=0.172 Sum_probs=119.7
Q ss_pred ceEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (535)
Q Consensus 148 ~kV~vIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (535)
+||+||| +|.||+++|..|..+|++|++||++++....... +.| +..+++. +.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~ 57 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAK 57 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhc
Confidence 4799998 7999999999999999999999999876533211 112 1123333 4578
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcCCCCcEEeecccCC----CCCCCEEEEEe
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSP----AHVMPLLEIVR 299 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~P----~~~~~lveiv~ 299 (535)
+||+||.|+|.+ ...++++++.+.+++++++++.+|+ .+.+.+.+.++...+|++.||+.. ...+..+.+++
T Consensus 58 ~aDvVIlavp~~--~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p 135 (437)
T PRK08655 58 DADIVIISVPIN--VTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP 135 (437)
T ss_pred cCCEEEEecCHH--HHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence 999999999964 4468889999999999999888774 345566666655568999998753 33466777888
Q ss_pred CCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395 300 TNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 300 ~~~ts~e~~~~~~~l~~~lGk~~i~v~ 326 (535)
++.++++.++.+.++++.+|..++.++
T Consensus 136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~ 162 (437)
T PRK08655 136 TEKRSNPWFDKVKNFLEKEGARVIVTS 162 (437)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 888899999999999999999988876
No 45
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.50 E-value=1.3e-13 Score=126.10 Aligned_cols=145 Identities=20% Similarity=0.231 Sum_probs=100.7
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (535)
|+||+|||+|.||.+||.+|+++|++|++||+++++.+... +.| .....+. +.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALA-----------EAG-------------AEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHH-----------HTT-------------EEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhH-----------Hhh-------------hhhhhhhhhHhh
Confidence 57999999999999999999999999999999999887654 222 2233444 4578
Q ss_pred CCCEEEEeccCChHHHHHHHHH--HHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEeecccC-CC-------CCC
Q 009395 226 DVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PA-------HVM 292 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~-P~-------~~~ 292 (535)
+||+||.|+|++.+ .++++.. +.+.+.++.+++ ++||.+++ ++++.+.. .|.||.. |+ ..+
T Consensus 57 ~~dvvi~~v~~~~~-v~~v~~~~~i~~~l~~g~iii-d~sT~~p~~~~~~~~~~~~----~g~~~vdapV~Gg~~~a~~g 130 (163)
T PF03446_consen 57 QADVVILCVPDDDA-VEAVLFGENILAGLRPGKIII-DMSTISPETSRELAERLAA----KGVRYVDAPVSGGPPGAEEG 130 (163)
T ss_dssp HBSEEEE-SSSHHH-HHHHHHCTTHGGGS-TTEEEE-E-SS--HHHHHHHHHHHHH----TTEEEEEEEEESHHHHHHHT
T ss_pred cccceEeecccchh-hhhhhhhhHHhhccccceEEE-ecCCcchhhhhhhhhhhhh----ccceeeeeeeeccccccccc
Confidence 89999999997655 4567776 888888998886 45556655 34444321 1344442 32 235
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEE
Q 009395 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324 (535)
Q Consensus 293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~ 324 (535)
.+..++.| +++.++.++++++.+++..++
T Consensus 131 ~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~ 159 (163)
T PF03446_consen 131 TLTIMVGG---DEEAFERVRPLLEAMGKNVYH 159 (163)
T ss_dssp TEEEEEES----HHHHHHHHHHHHHHEEEEEE
T ss_pred ceEEEccC---CHHHHHHHHHHHHHHhCCcee
Confidence 67777777 589999999999999998874
No 46
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.50 E-value=4.2e-13 Score=130.17 Aligned_cols=190 Identities=16% Similarity=0.127 Sum_probs=138.8
Q ss_pred cceEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (535)
++||+|||+|+||.+|+..|.++| .+|++.+++++..+...++ .| ....+++.+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~----------~g------------~~~~~~~~~ 58 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAE----------YG------------VVTTTDNQE 58 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHH----------cC------------CcccCcHHH
Confidence 368999999999999999999999 5899999999987633211 11 111222335
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEE-EEeCC
Q 009395 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTN 301 (535)
Q Consensus 223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~~~ 301 (535)
.+..+|+||.||. |....+++.++.+ ..++.+|+|...+++++.+.+.++ ..+++..+|+.|+..+..+. ++.+.
T Consensus 59 ~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~~ 134 (266)
T COG0345 59 AVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISANA 134 (266)
T ss_pred HHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecCc
Confidence 6788999999994 6778899999988 778889999999999999999998 78999999999987755544 55778
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEeCCcccch--hhhh---HHHHHHHHHHH--HHcCCCHHHHHHHHH
Q 009395 302 QTSPQVIVDLLDIGKKIKKTPIVVGNCTGFA--VNRM---FFPYTQAAFLL--VERGTDLYLIDRAIT 362 (535)
Q Consensus 302 ~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i--~nri---~~~~~~ea~~l--~~~G~~~~~ID~a~~ 362 (535)
.++++..+.+..+++.+|+...+-.+.-..+ +.-. +..++.|++.- +..|++.++.-++..
T Consensus 135 ~~~~~~~~~v~~l~~~~G~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~ 202 (266)
T COG0345 135 NVSEEDKAFVEALLSAVGKVVEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAA 202 (266)
T ss_pred cCCHHHHHHHHHHHHhcCCeEEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 8999999999999999998655432100000 0000 11234555444 346777766665543
No 47
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.49 E-value=1e-12 Score=138.97 Aligned_cols=188 Identities=15% Similarity=0.160 Sum_probs=130.5
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc----
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES---- 223 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---- 223 (535)
.+|+|||+|.||++||..|+++|++|++||++++..+...+.. ...|. .+..+.++++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~-----------~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKA-------KEGNT-----------RVKGYHTLEELVNS 63 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhh-------hhcCC-----------cceecCCHHHHHhc
Confidence 4799999999999999999999999999999999987654310 00121 1223344433
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHH--HHhhcCCCCcEEeecccC-CCCC-------CC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL--IGERTYSKDRIVGAHFFS-PAHV-------MP 293 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~--l~~~~~~~~r~ig~h~~~-P~~~-------~~ 293 (535)
+.++|+||.+||... ..++++.++.+.+.++.||++.+++.+.+. ..+.+. --|+||+. |++. ++
T Consensus 64 l~~~d~Iil~v~~~~-~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~----~~Gi~fldapVSGG~~gA~~G~ 138 (470)
T PTZ00142 64 LKKPRKVILLIKAGE-AVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCE----EKGILYLGMGVSGGEEGARYGP 138 (470)
T ss_pred CCCCCEEEEEeCChH-HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHH----HcCCeEEcCCCCCCHHHHhcCC
Confidence 346899999998654 456778899999999998887666554432 222221 12566653 4432 34
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCc------eEEeCC-cccc---hh-hhhHHH---HHHHHHHHHH--cCCCHHHH
Q 009395 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVGN-CTGF---AV-NRMFFP---YTQAAFLLVE--RGTDLYLI 357 (535)
Q Consensus 294 lveiv~~~~ts~e~~~~~~~l~~~lGk~------~i~v~d-~~G~---i~-nri~~~---~~~ea~~l~~--~G~~~~~I 357 (535)
. +++|. ++++++.++++++.++.. ..++++ ..|. ++ |-+.+. .+.|++.+.+ .|++++++
T Consensus 139 -~-lm~GG--~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l 214 (470)
T PTZ00142 139 -S-LMPGG--NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEEL 214 (470)
T ss_pred -E-EEEeC--CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHH
Confidence 3 44442 689999999999999987 567775 3343 23 444443 4789999986 68899999
Q ss_pred HHHHH
Q 009395 358 DRAIT 362 (535)
Q Consensus 358 D~a~~ 362 (535)
-.+++
T Consensus 215 ~~v~~ 219 (470)
T PTZ00142 215 SEVFN 219 (470)
T ss_pred HHHHH
Confidence 88875
No 48
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.47 E-value=3.6e-12 Score=128.25 Aligned_cols=189 Identities=9% Similarity=0.083 Sum_probs=126.2
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (535)
+||+|||+|.||.+||..|+++|++|++||+++++++.+.+ .|..... + ..++ +.+.+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~-----------~g~~~~~---------s-~~~~~~~~~~ 59 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE-----------DRTTGVA---------N-LRELSQRLSA 59 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCcccC---------C-HHHHHhhcCC
Confidence 37999999999999999999999999999999998765532 2211000 0 0011 23567
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH--HHHhhc-CCCCcEEeecccCCCC--CCCEEEEEeCC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERT-YSKDRIVGAHFFSPAH--VMPLLEIVRTN 301 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~-~~~~r~ig~h~~~P~~--~~~lveiv~~~ 301 (535)
+|+||.|+|.+ ..++++.++.+.++++.++++.+++.+.+ ++.+.+ ....+|+..+...++. ...+..++.|
T Consensus 60 ~dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG- 136 (298)
T TIGR00872 60 PRVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG- 136 (298)
T ss_pred CCEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC-
Confidence 99999999976 55788899999998888887665554332 333333 2233455543332111 1123334444
Q ss_pred CCCHHHHHHHHHHHHhcCC---ceEEeCCc-ccc---hhhh-hHHH---HHHHHHHHHHc-C--CCHHHHHHHHH
Q 009395 302 QTSPQVIVDLLDIGKKIKK---TPIVVGNC-TGF---AVNR-MFFP---YTQAAFLLVER-G--TDLYLIDRAIT 362 (535)
Q Consensus 302 ~ts~e~~~~~~~l~~~lGk---~~i~v~d~-~G~---i~nr-i~~~---~~~ea~~l~~~-G--~~~~~ID~a~~ 362 (535)
+++.++.++++++.++. ..+++++. .|. ++++ +.+. .+.|++.+++. | ++++++-++|+
T Consensus 137 --~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~ 209 (298)
T TIGR00872 137 --DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWR 209 (298)
T ss_pred --CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHc
Confidence 68899999999999986 46778753 232 2344 3332 36899999875 4 59999999987
No 49
>PLN02256 arogenate dehydrogenase
Probab=99.47 E-value=1.5e-12 Score=130.51 Aligned_cols=153 Identities=13% Similarity=0.064 Sum_probs=112.2
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c-
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F- 224 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~- 224 (535)
.++|+|||+|.||+++|..+.+.|++|++||+++.. +.+. +.|. ...++.++ +
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~gv-------------~~~~~~~e~~~ 90 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELGV-------------SFFRDPDDFCE 90 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcCC-------------eeeCCHHHHhh
Confidence 458999999999999999999999999999998632 1111 1121 11233333 3
Q ss_pred cCCCEEEEeccCChHHHHHHHHHH-HhhcCCCceeeecCCc--CcHHHHHhhcCCCCcEEeecccCCCCCC------CEE
Q 009395 225 KDVDMVIEAIIENVSLKQQIFADL-EKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVM------PLL 295 (535)
Q Consensus 225 ~~aDlVI~avpe~~~~k~~v~~~l-~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~P~~~~------~lv 295 (535)
.+||+||.|+|.. ...+++.++ .+.++++++|++.+|+ .+++.+.+.++...+|++.||+.++... .-+
T Consensus 91 ~~aDvVilavp~~--~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~ 168 (304)
T PLN02256 91 EHPDVVLLCTSIL--STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF 168 (304)
T ss_pred CCCCEEEEecCHH--HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence 4699999999853 557888888 5678899999988884 4566777776555689999999876532 112
Q ss_pred EEEeC----CCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395 296 EIVRT----NQTSPQVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 296 eiv~~----~~ts~e~~~~~~~l~~~lGk~~i~v~ 326 (535)
.+++. +.++++.++.+.++++.+|..++.+.
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 22221 56788999999999999999999886
No 50
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.46 E-value=3.2e-12 Score=135.22 Aligned_cols=190 Identities=16% Similarity=0.217 Sum_probs=128.2
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc---
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--- 222 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--- 222 (535)
.+.+|+|||+|.||.+||..|+++|++|++|||++++.+...+.. ...|.. .+....+++
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga~----------~~~~a~s~~e~v 67 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGNL----------PLYGFKDPEDFV 67 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCCc----------ccccCCCHHHHH
Confidence 356899999999999999999999999999999999887654210 001210 011222332
Q ss_pred -cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEeeccc-CCCC-------
Q 009395 223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAH------- 290 (535)
Q Consensus 223 -~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~-~P~~------- 290 (535)
.++.+|+||.|||.+..+ ++++..+.+.+.++.|+++.+ +..+. ++++.+.. .|+||+ .|++
T Consensus 68 ~~l~~~dvIi~~v~~~~aV-~~Vi~gl~~~l~~G~iiID~s-T~~~~~t~~~~~~l~~----~Gi~fldapVSGG~~gA~ 141 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPV-DQTIKALSEYMEPGDCIIDGG-NEWYENTERRIKEAAE----KGLLYLGMGVSGGEEGAR 141 (493)
T ss_pred hcCCCCCEEEEECCCcHHH-HHHHHHHHhhcCCCCEEEECC-CCCHHHHHHHHHHHHH----cCCeEEeCCCcCCHHHhc
Confidence 234599999999977655 566688888888888887544 44333 33333321 255555 2443
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhcCCc------eEEeCCc-ccc---hhhhh-HHH---HHHHHHHHHHc--CCCH
Q 009395 291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVGNC-TGF---AVNRM-FFP---YTQAAFLLVER--GTDL 354 (535)
Q Consensus 291 ~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~------~i~v~d~-~G~---i~nri-~~~---~~~ea~~l~~~--G~~~ 354 (535)
.++ .+++|. ++++++.++++++.++.. .+++++. .|. ++|+. .+. .+.|++.+.+. |+++
T Consensus 142 ~G~--~im~GG--~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~ 217 (493)
T PLN02350 142 NGP--SLMPGG--SFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSN 217 (493)
T ss_pred CCC--eEEecC--CHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCH
Confidence 244 345553 789999999999999954 7788852 333 34444 333 47899999864 8999
Q ss_pred HHHHHHHH
Q 009395 355 YLIDRAIT 362 (535)
Q Consensus 355 ~~ID~a~~ 362 (535)
+++-.++.
T Consensus 218 ~~l~~vf~ 225 (493)
T PLN02350 218 EELAEVFA 225 (493)
T ss_pred HHHHHHHH
Confidence 99998854
No 51
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.46 E-value=1.6e-13 Score=153.12 Aligned_cols=102 Identities=19% Similarity=0.202 Sum_probs=92.2
Q ss_pred HHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCh---hHHHHHHHhchHHH
Q 009395 309 VDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVA 382 (535)
Q Consensus 309 ~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~--~~~~ID~a~~-g~G~p~---GPf~~~D~~Gld~~ 382 (535)
+.+.+++..+++.++.+.+.+|||+||++.+++||+++++++|+ +|+|||.++. |+|||+ |||+++|.+|+|.+
T Consensus 625 ~~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v 704 (737)
T TIGR02441 625 SDADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKL 704 (737)
T ss_pred HHHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHH
Confidence 34455667778777765678999999999999999999999997 9999999999 999996 99999999999999
Q ss_pred HHHHHHHHHhCCCCCccCccHHHHHHC-C
Q 009395 383 IATGMQFIENFPERTYKSMIIPIMQED-K 410 (535)
Q Consensus 383 ~~~~~~l~~~~~~~~~~~~~l~~~~~~-G 410 (535)
.+.++.++..+++++.|++++.+|+++ |
T Consensus 705 ~~~~~~l~~~~g~~~~p~~lL~~~~~~~g 733 (737)
T TIGR02441 705 VDKMEKYAAAYGVQFTPCQLLLDHAKSPG 733 (737)
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHHhcC
Confidence 999999999999988899999999987 6
No 52
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.45 E-value=2.4e-12 Score=130.33 Aligned_cols=155 Identities=15% Similarity=0.163 Sum_probs=114.2
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395 147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (535)
+++|+|||+|.||.++|..|.++|+ +|++||++++.++.+. +.|... ....+. +.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~ 63 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-----------ELGLGD-----------RVTTSAAEA 63 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hCCCCc-----------eecCCHHHH
Confidence 5789999999999999999999995 8999999998766542 122210 112223 45
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH---HHHHhhcCCCCcEEeecccCCCCC---------
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFFSPAHV--------- 291 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~---~~l~~~~~~~~r~ig~h~~~P~~~--------- 291 (535)
+++||+||+|+|.. ....+++++.+.+++++++++.+| ... ..+...++...++++.||+.+...
T Consensus 64 ~~~aDvViiavp~~--~~~~v~~~l~~~l~~~~iv~dvgs-~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~ 140 (307)
T PRK07502 64 VKGADLVILCVPVG--ASGAVAAEIAPHLKPGAIVTDVGS-VKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE 140 (307)
T ss_pred hcCCCEEEECCCHH--HHHHHHHHHHhhCCCCCEEEeCcc-chHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence 78999999999864 446788888888888887765444 333 334444444558999999975321
Q ss_pred ---CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395 292 ---MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 292 ---~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~ 326 (535)
+..+.+++...++++.++.+.++++.+|..++.++
T Consensus 141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~ 178 (307)
T PRK07502 141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD 178 (307)
T ss_pred HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 23456777777889999999999999999998876
No 53
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.45 E-value=3.3e-12 Score=134.08 Aligned_cols=198 Identities=14% Similarity=0.156 Sum_probs=128.3
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhcccccc
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTGV 218 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 218 (535)
++||+|||+|.||.++|..|+++|++|++||+++++++..... +...+.+.++. +++..+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~------------g~l~~~ 70 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEG------------GYLRAT 70 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhc------------Cceeee
Confidence 5799999999999999999999999999999999998764321 11111111111 234444
Q ss_pred cCcccccCCCEEEEeccCC--------hHHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcCC--CC-cE--E-
Q 009395 219 LDYESFKDVDMVIEAIIEN--------VSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS--KD-RI--V- 281 (535)
Q Consensus 219 ~~~~~~~~aDlVI~avpe~--------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~--~~-r~--i- 281 (535)
++ +++||+||.|||.+ ......+++.+.++++++++++. .||+++. ++...+.. +. ++ -
T Consensus 71 ~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~-~STv~pgtt~~~~~~l~~~~~~~~~~~~~ 146 (415)
T PRK11064 71 TT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVIL-ESTSPVGATEQMAEWLAEARPDLTFPQQA 146 (415)
T ss_pred cc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEE-eCCCCCCHHHHHHHHHHHhccCCcccccc
Confidence 43 45899999999964 25556777889999999987754 4454443 33322211 00 00 0
Q ss_pred --e--ecc-cCC--CCCC-------CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCc-cc---chhhhhHH----H
Q 009395 282 --G--AHF-FSP--AHVM-------PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFF----P 339 (535)
Q Consensus 282 --g--~h~-~~P--~~~~-------~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~-~G---~i~nri~~----~ 339 (535)
+ .+. ++| ...+ ....++.+ .+++..+.++++++.++..++++++. .+ -++++.+. +
T Consensus 147 g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia 224 (415)
T PRK11064 147 GEQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIA 224 (415)
T ss_pred cCCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 001 244 1111 12235544 47899999999999999877777652 22 24455543 4
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHH
Q 009395 340 YTQAAFLLVE-RGTDLYLIDRAIT 362 (535)
Q Consensus 340 ~~~ea~~l~~-~G~~~~~ID~a~~ 362 (535)
++||+..+.+ .|+|+.++-+++.
T Consensus 225 ~~nE~~~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 225 FANELSLICADQGINVWELIRLAN 248 (415)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhc
Confidence 5899999987 6999999987764
No 54
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.45 E-value=3.8e-12 Score=134.01 Aligned_cols=206 Identities=17% Similarity=0.176 Sum_probs=131.2
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHh--hhcccccccCcc-cc
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEK--TISLLTGVLDYE-SF 224 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~--~~~~i~~~~~~~-~~ 224 (535)
+||+|||+|.||.++|..|+++|++|++||+++++++...+..... .+.+ +. +.... ..++++.+++++ .+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~----~e~~-l~-~~~~~~~~~g~l~~~~~~~~~~ 74 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPI----YEPG-LD-ELLAKALAAGRLRATTDYEDAI 74 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCC----CCCC-HH-HHHHHhhhcCCeEEECCHHHHH
Confidence 3799999999999999999999999999999999887654211000 0000 00 00000 013455666664 48
Q ss_pred cCCCEEEEeccCCh--------HHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHH-hhcCC-------CCcEEeecc
Q 009395 225 KDVDMVIEAIIENV--------SLKQQIFADLEKYCPPHCILASNTSTIDLN---LIG-ERTYS-------KDRIVGAHF 285 (535)
Q Consensus 225 ~~aDlVI~avpe~~--------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~-~~~~~-------~~r~ig~h~ 285 (535)
++||+||.|||... .....+...+.+.++++++++. +||+++. ++. ..+.. ..-.+..+|
T Consensus 75 ~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P 153 (411)
T TIGR03026 75 RDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNP 153 (411)
T ss_pred hhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECC
Confidence 89999999998653 2456677888888888887764 5566443 332 22211 111233333
Q ss_pred cC--CCCC----CCEEEEEeCCCCCHHHHHHHHHHHHhcC-CceEEeCCc-cc---chhhhhH----HHHHHHHHHHHH-
Q 009395 286 FS--PAHV----MPLLEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGNC-TG---FAVNRMF----FPYTQAAFLLVE- 349 (535)
Q Consensus 286 ~~--P~~~----~~lveiv~~~~ts~e~~~~~~~l~~~lG-k~~i~v~d~-~G---~i~nri~----~~~~~ea~~l~~- 349 (535)
-. +... .....++.| .+++..+.++++++.++ +.++.+++. .+ -++++++ .++++|+..+.+
T Consensus 154 e~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~ 231 (411)
T TIGR03026 154 EFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEA 231 (411)
T ss_pred CcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1110 011134444 37899999999999998 577777652 12 2445555 356899999987
Q ss_pred cCCCHHHHHHHHH
Q 009395 350 RGTDLYLIDRAIT 362 (535)
Q Consensus 350 ~G~~~~~ID~a~~ 362 (535)
.|++++++-.++.
T Consensus 232 ~GiD~~~v~~~~~ 244 (411)
T TIGR03026 232 LGIDVYEVIEAAG 244 (411)
T ss_pred hCCCHHHHHHHhC
Confidence 6999999988876
No 55
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.44 E-value=5.9e-12 Score=125.32 Aligned_cols=153 Identities=14% Similarity=0.072 Sum_probs=118.4
Q ss_pred cceEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (535)
|++|+|||+|.||.+|+..|.++| ++|++|+++++. .+.... . ...+..+.+.
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~-----------~-----------~~~~~~~~~~ 58 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYD-----------K-----------YPTVELADNE 58 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHH-----------H-----------cCCeEEeCCH
Confidence 468999999999999999999998 789999987532 222110 0 0011222333
Q ss_pred -ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEE-EEe
Q 009395 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVR 299 (535)
Q Consensus 222 -~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~ 299 (535)
+.+.+||+||.|+| +....+++.++.+.++++++|+|.+.++++++|.+.++. .+++.++|+.|+..+..+. +++
T Consensus 59 ~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 34689999999998 445678899998888888888999999999999998753 4899999999987655544 446
Q ss_pred CCCCCHHHHHHHHHHHHhcCCceEE
Q 009395 300 TNQTSPQVIVDLLDIGKKIKKTPIV 324 (535)
Q Consensus 300 ~~~ts~e~~~~~~~l~~~lGk~~i~ 324 (535)
++..+++..+.++.+|..+|+...+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 7788999999999999999986654
No 56
>PLN02858 fructose-bisphosphate aldolase
Probab=99.42 E-value=3.4e-12 Score=150.35 Aligned_cols=188 Identities=16% Similarity=0.126 Sum_probs=134.7
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
-++|+|||+|.||.+||.+|+++|++|++||+++++.+... +.|.. ...+..+.+++
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~Ga~------------~~~s~~e~a~~ 60 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELGGH------------RCDSPAEAAKD 60 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCCe------------ecCCHHHHHhc
Confidence 46899999999999999999999999999999999877653 23321 11223355788
Q ss_pred CCEEEEeccCChHHHHHHH--HHHHhhcCCCceeeecCCcCcHHH---HHhhcCCCCcEEe--eccc-CCCC-------C
Q 009395 227 VDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLNL---IGERTYSKDRIVG--AHFF-SPAH-------V 291 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~~r~ig--~h~~-~P~~-------~ 291 (535)
||+||.|+|++..++..++ ..+.+.+.++.+++ ++||++++. +++.+.. .| .+|. .|+. .
T Consensus 61 advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iiv-d~STi~p~~~~~la~~l~~----~g~~~~~lDaPVsGg~~~A~~ 135 (1378)
T PLN02858 61 AAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVIL-IRSTILPLQLQKLEKKLTE----RKEQIFLVDAYVSKGMSDLLN 135 (1378)
T ss_pred CCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEE-ECCCCCHHHHHHHHHHHHh----cCCceEEEEccCcCCHHHHhc
Confidence 9999999998876655444 35677777888776 456676654 4433321 13 4444 2433 3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEe-CCc-ccc---hhhhhHHH----HHHHHHHHHH-cCCCHHHHHHHH
Q 009395 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV-GNC-TGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAI 361 (535)
Q Consensus 292 ~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v-~d~-~G~---i~nri~~~----~~~ea~~l~~-~G~~~~~ID~a~ 361 (535)
+.++.++.| +++.++.++++++.+|+..+++ ++. .|. ++|+++.. .+.||+.+.+ .|++++.+-+++
T Consensus 136 G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl 212 (1378)
T PLN02858 136 GKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDII 212 (1378)
T ss_pred CCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 566767766 6889999999999999988865 642 333 46666543 4789999976 799999999998
Q ss_pred H-hcC
Q 009395 362 T-KFG 365 (535)
Q Consensus 362 ~-g~G 365 (535)
. +.|
T Consensus 213 ~~s~g 217 (1378)
T PLN02858 213 SNAAG 217 (1378)
T ss_pred hcCCc
Confidence 8 554
No 57
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.42 E-value=1.3e-11 Score=124.28 Aligned_cols=182 Identities=16% Similarity=0.139 Sum_probs=122.7
Q ss_pred eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc--
Q 009395 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK-- 225 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~-- 225 (535)
+|+|||+|.||.++|..|+++|++|++||+++++.+.+. +.|. ....+.++ ++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~~ 57 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLGI-------------TARHSLEELVSKL 57 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHHhC
Confidence 799999999999999999999999999999998766542 1221 12223332 33
Q ss_pred -CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc--HHHHHhhcCCCCcEEeecccC-CCCC------CCEE
Q 009395 226 -DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFS-PAHV------MPLL 295 (535)
Q Consensus 226 -~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~-P~~~------~~lv 295 (535)
.+|+||.|+|.+.. .++++..+.+.++++.+++..+++.+ ..++.+.+.. .|.+|.. |+.. ....
T Consensus 58 ~~advVi~~vp~~~~-~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~vdapV~G~~~~a~~g~~ 132 (299)
T PRK12490 58 EAPRTIWVMVPAGEV-TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAE----RGIHYVDCGTSGGVWGLRNGYC 132 (299)
T ss_pred CCCCEEEEEecCchH-HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHH----cCCeEEeCCCCCCHHHHhcCCe
Confidence 37999999997644 45667788888888887765433222 2244444321 1344442 3321 1223
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCC---ceEEeCCc-ccc---hhhhhHH----HHHHHHHHHHH-cC--CCHHHHHHHH
Q 009395 296 EIVRTNQTSPQVIVDLLDIGKKIKK---TPIVVGNC-TGF---AVNRMFF----PYTQAAFLLVE-RG--TDLYLIDRAI 361 (535)
Q Consensus 296 eiv~~~~ts~e~~~~~~~l~~~lGk---~~i~v~d~-~G~---i~nri~~----~~~~ea~~l~~-~G--~~~~~ID~a~ 361 (535)
.++.| +++.++.++++++.+|. ..+++++. .|. ++|+++. ..+.|++.+.+ .| ++++++-+++
T Consensus 133 ~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~ 209 (299)
T PRK12490 133 LMVGG---DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW 209 (299)
T ss_pred EEecC---CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence 34445 68899999999999997 67888752 222 4555543 23789999987 56 8999998888
Q ss_pred H
Q 009395 362 T 362 (535)
Q Consensus 362 ~ 362 (535)
+
T Consensus 210 ~ 210 (299)
T PRK12490 210 R 210 (299)
T ss_pred c
Confidence 7
No 58
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.41 E-value=2.1e-13 Score=113.45 Aligned_cols=68 Identities=28% Similarity=0.370 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCC
Q 009395 461 DIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQG 529 (535)
Q Consensus 461 ~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~ 529 (535)
||+||++.+++|||++++++|++ +++|||.+++.|+|||++|++++|.+|+|++.++++.+.+.+++.
T Consensus 2 Fi~nRl~~~~~~ea~~l~~egva-s~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~ 69 (97)
T PF00725_consen 2 FIVNRLLAALLNEAARLVEEGVA-SPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDR 69 (97)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCG
T ss_pred hHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCC
Confidence 68999999999999999999998 999999999999999999999999999999999999999988876
No 59
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.40 E-value=2e-11 Score=123.12 Aligned_cols=183 Identities=18% Similarity=0.176 Sum_probs=123.6
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc-
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK- 225 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~- 225 (535)
++|+|||+|.||.+||..|+++|++|++||+++++.+... +.|. ...++.++ ++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~~ 56 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEGA-------------TGADSLEELVAK 56 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHhh
Confidence 3799999999999999999999999999999998876542 2221 12223322 22
Q ss_pred --CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH--HHHhhcCCCCcEEeeccc-CCCCC------CCE
Q 009395 226 --DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFF-SPAHV------MPL 294 (535)
Q Consensus 226 --~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~-~P~~~------~~l 294 (535)
++|+||.|+|.+..+ .+++..+.+.++++.++++.+++.+.. ++.+.+.. .|.+|. .|+.. ..+
T Consensus 57 ~~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~~dapvsG~~~~a~~g~ 131 (301)
T PRK09599 57 LPAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE----KGIHFVDVGTSGGVWGLERGY 131 (301)
T ss_pred cCCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH----cCCEEEeCCCCcCHHHHhcCC
Confidence 479999999976443 566778888888888776544433322 34443321 144443 23321 123
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCC----ceEEeCCc-ccc---hhhhhH-HH---HHHHHHHHHH---cCCCHHHHHH
Q 009395 295 LEIVRTNQTSPQVIVDLLDIGKKIKK----TPIVVGNC-TGF---AVNRMF-FP---YTQAAFLLVE---RGTDLYLIDR 359 (535)
Q Consensus 295 veiv~~~~ts~e~~~~~~~l~~~lGk----~~i~v~d~-~G~---i~nri~-~~---~~~ea~~l~~---~G~~~~~ID~ 359 (535)
. ++.+ .+++.++.++++++.+++ ..+++++. .|. ++|+.+ +. .+.|++.+.+ .|++++++-+
T Consensus 132 ~-~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~ 208 (301)
T PRK09599 132 C-LMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAE 208 (301)
T ss_pred e-EEec--CCHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3 4333 278999999999999998 78888863 232 344443 33 3689999986 5689999999
Q ss_pred HHH
Q 009395 360 AIT 362 (535)
Q Consensus 360 a~~ 362 (535)
+++
T Consensus 209 ~~~ 211 (301)
T PRK09599 209 VWR 211 (301)
T ss_pred HHh
Confidence 987
No 60
>PRK07680 late competence protein ComER; Validated
Probab=99.39 E-value=2.8e-11 Score=120.43 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=112.2
Q ss_pred eEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395 149 KVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (535)
+|+|||+|.||.+++..|.++|+ +|++||++++..+...+. . ..+..+.+. +.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------~------------~g~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------Y------------PGIHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------c------------CCeEEECCHHHH
Confidence 69999999999999999999994 799999998876543210 0 012223333 44
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCC-CCEEEEEeCCC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-MPLLEIVRTNQ 302 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~-~~lveiv~~~~ 302 (535)
+.+||+||.|+| +....++++++.++++++++|++.+++++++.+...++ .+++..+|..|... ....-++.++.
T Consensus 60 ~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~ 135 (273)
T PRK07680 60 ISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR 135 (273)
T ss_pred HHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence 789999999997 44567888889888888888889999899999988764 35677777655322 22333456767
Q ss_pred CCHHHHHHHHHHHHhcCCceEEeC
Q 009395 303 TSPQVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 303 ts~e~~~~~~~l~~~lGk~~i~v~ 326 (535)
.+++..+.+.+++..+|. ++.+.
T Consensus 136 ~~~~~~~~~~~ll~~~G~-~~~i~ 158 (273)
T PRK07680 136 CSEEDQQKLERLFSNIST-PLVIE 158 (273)
T ss_pred CCHHHHHHHHHHHHcCCC-EEEEC
Confidence 788889999999999995 45554
No 61
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.39 E-value=3.5e-11 Score=122.38 Aligned_cols=205 Identities=16% Similarity=0.100 Sum_probs=134.8
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCCCEEEEeccCC
Q 009395 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIEN 237 (535)
Q Consensus 159 G~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVI~avpe~ 237 (535)
|.+||..|+++|++|++||++++.++... .+.....| ++.+++. +.+++||+||.|+|..
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCCc
Confidence 78999999999999999999988654211 11111222 2333333 5578999999999965
Q ss_pred hHHHHHHHHHHHhhcCCCceeeecCCcCcHHH----HHhhcCCCCcEEeecccCCCCC----CCEEEEEeCC------CC
Q 009395 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNL----IGERTYSKDRIVGAHFFSPAHV----MPLLEIVRTN------QT 303 (535)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~----l~~~~~~~~r~ig~h~~~P~~~----~~lveiv~~~------~t 303 (535)
. ..++++..+.+.++++++|++ +|+.++.. +.+.+..+.+.+|.||++|... ..-++++.+. ..
T Consensus 93 ~-~v~~Vl~~L~~~L~~g~IVId-~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~ 170 (342)
T PRK12557 93 K-KTVEIAKNILPHLPENAVICN-TCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA 170 (342)
T ss_pred H-HHHHHHHHHHhhCCCCCEEEE-ecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence 4 467888899999999988774 55555543 3345544456778888776532 2223445443 33
Q ss_pred CHHHHHHHHHHHHhcCCceEEeCCcccc---hhhhhHHH----HHHHHHHHHH-cCCCHHHHHHHH-HhcCCChhHHHHH
Q 009395 304 SPQVIVDLLDIGKKIKKTPIVVGNCTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAI-TKFGMPMGPFRLA 374 (535)
Q Consensus 304 s~e~~~~~~~l~~~lGk~~i~v~d~~G~---i~nri~~~----~~~ea~~l~~-~G~~~~~ID~a~-~g~G~p~GPf~~~ 374 (535)
+++.++.++++++.+|+.+++++...|. ..|+++.+ ...|++.+.+ .|.+|.+.-+-+ .. --.|--.++
T Consensus 171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~--~~~~~a~l~ 248 (342)
T PRK12557 171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILM--TLQTMASLV 248 (342)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH--HHHHHHHHH
Confidence 8899999999999999988888743332 24555543 3678888876 456665544332 21 113666777
Q ss_pred HHhchHHHHHHH
Q 009395 375 DLVGFGVAIATG 386 (535)
Q Consensus 375 D~~Gld~~~~~~ 386 (535)
-..|+|.+.+.+
T Consensus 249 ~~~~~~~~~~~~ 260 (342)
T PRK12557 249 ETSGVDGLLKAL 260 (342)
T ss_pred HHhChHHHHHhc
Confidence 777777766654
No 62
>PLN02858 fructose-bisphosphate aldolase
Probab=99.39 E-value=7.6e-12 Score=147.44 Aligned_cols=191 Identities=20% Similarity=0.234 Sum_probs=132.1
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
..++|+|||+|.||.+||..|+++|++|++||+++++.+... +.|. ....+..+.++
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~Ga------------~~~~s~~e~~~ 379 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAGG------------LAGNSPAEVAK 379 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCC------------eecCCHHHHHh
Confidence 347899999999999999999999999999999998876542 2221 11122235578
Q ss_pred CCCEEEEeccCChHHHHHHHH--HHHhhcCCCceeeecCCcCcHHH---HHhhcCCCCcEEeecccC-CCC-------CC
Q 009395 226 DVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLNL---IGERTYSKDRIVGAHFFS-PAH-------VM 292 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~~r~ig~h~~~-P~~-------~~ 292 (535)
+||+||.|||.+.+++..++. .+.+.+.++.+++ ++||+++.. +++.+.. .-.|.+|.. |+. .+
T Consensus 380 ~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivV-d~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~G 456 (1378)
T PLN02858 380 DVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIV-LSSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAMG 456 (1378)
T ss_pred cCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhcC
Confidence 999999999976665444433 3566677888776 456666653 4443321 013555542 432 24
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc--c---hhhhhHHH----HHHHHHHHHH-cCCCHHHHHHHHH
Q 009395 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG--F---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT 362 (535)
Q Consensus 293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G--~---i~nri~~~----~~~ea~~l~~-~G~~~~~ID~a~~ 362 (535)
.+..++.| +++.++.++++++.+|+..+++...+| . ++|+++.. .++|++.+.+ .|++++.+-+++.
T Consensus 457 ~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~ 533 (1378)
T PLN02858 457 TLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIIS 533 (1378)
T ss_pred CceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56666666 578999999999999998877543233 2 46666543 4789998876 7999999988887
Q ss_pred -hcC
Q 009395 363 -KFG 365 (535)
Q Consensus 363 -g~G 365 (535)
+.|
T Consensus 534 ~s~g 537 (1378)
T PLN02858 534 NAGG 537 (1378)
T ss_pred hhcc
Confidence 544
No 63
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.38 E-value=1.6e-11 Score=123.27 Aligned_cols=186 Identities=17% Similarity=0.098 Sum_probs=128.7
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
-++|+|||.|.||.++|..|..+|++|++++++.++..... .+.| +...+..+.++.
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G-------------~~~~s~~eaa~~ 73 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADG-------------FEVLTVAEAAKW 73 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCC-------------CeeCCHHHHHhc
Confidence 36899999999999999999999999999888754332111 0112 112222355789
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCC-------CCC-EEEE
Q 009395 227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-------VMP-LLEI 297 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~-------~~~-lvei 297 (535)
||+|+.++|+... ..++ +++.+.++++++| +.++++++..+....+...+++..+|..|.+ .+. ..-+
T Consensus 74 ADVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l 150 (330)
T PRK05479 74 ADVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCL 150 (330)
T ss_pred CCEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEE
Confidence 9999999996543 6777 7899999999988 7889999988776665566799999999987 322 2233
Q ss_pred E-eCCCCCHHHHHHHHHHHHhcCCceE-----EeCC-c-ccc-----hhhhhHHHHHHHHHHHH-HcCCCHHHHH
Q 009395 298 V-RTNQTSPQVIVDLLDIGKKIKKTPI-----VVGN-C-TGF-----AVNRMFFPYTQAAFLLV-ERGTDLYLID 358 (535)
Q Consensus 298 v-~~~~ts~e~~~~~~~l~~~lGk~~i-----~v~d-~-~G~-----i~nri~~~~~~ea~~l~-~~G~~~~~ID 358 (535)
+ .+...+.+..+.+..++..+|..+. ...+ . ... ++..-+..++..++..+ +.|++|+..-
T Consensus 151 ~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay 225 (330)
T PRK05479 151 IAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAY 225 (330)
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4 4566778999999999999998865 2221 1 111 12222334555665554 5677776543
No 64
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.37 E-value=7e-13 Score=121.59 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCCCCC
Q 009395 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGRNH 532 (535)
Q Consensus 459 ~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~ 532 (535)
..||+||++.|+++||+++++.|.+ +-+|||.+|.+|.||||||+.+.||+|||++..+|..|.+.++.+..|
T Consensus 199 pGFIVNRlLiPyl~ea~r~yerGdA-skeDIDtaMklGagyPMGPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f 271 (298)
T KOG2304|consen 199 PGFIVNRLLIPYLMEAIRMYERGDA-SKEDIDTAMKLGAGYPMGPFELADYVGLDTCKFVMDGWHEGYPEDSLF 271 (298)
T ss_pred CchhhhHHHHHHHHHHHHHHHhcCC-cHhhHHHHHhccCCCCCChHHHHHHhhHHHHHHHHHHHHhcCCccccc
Confidence 3599999999999999999999999 999999999999999999999999999999999999999998776655
No 65
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.36 E-value=5.7e-11 Score=119.47 Aligned_cols=202 Identities=14% Similarity=0.079 Sum_probs=138.9
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
++|+|||+|+||.++|..|..+|++|+++++. .+..+.+. +.| +...+..+.+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~G-------------v~~~s~~ea~~~ 59 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDG-------------FKVGTVEEAIPQ 59 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCC-------------CEECCHHHHHhc
Confidence 57999999999999999999999998876554 33333221 112 112233345789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCC-------CC-EEEEE
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-------MP-LLEIV 298 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~-------~~-lveiv 298 (535)
||+|+.++|+... ...+++++.+.++++. ++|...++++..+...++...+++.++|+.|.+. +. ..-++
T Consensus 60 ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~ 137 (314)
T TIGR00465 60 ADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI 137 (314)
T ss_pred CCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence 9999999996533 4566778888888776 6688999999998887765568999999999873 43 33454
Q ss_pred -eCCCCCHHHHHHHHHHHHhcCCc-------eE--EeC-Ccccc--hhhhhHHHH---HHHHHHHHHcCCCHHHHHHHHH
Q 009395 299 -RTNQTSPQVIVDLLDIGKKIKKT-------PI--VVG-NCTGF--AVNRMFFPY---TQAAFLLVERGTDLYLIDRAIT 362 (535)
Q Consensus 299 -~~~~ts~e~~~~~~~l~~~lGk~-------~i--~v~-d~~G~--i~nri~~~~---~~ea~~l~~~G~~~~~ID~a~~ 362 (535)
.+...+.+..+.+..+++.+|.. .+ .+. |--+. .+.-...++ +.|++ ++.|++++.--....
T Consensus 138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal--v~~G~~~e~A~~~~~ 215 (314)
T TIGR00465 138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL--VEAGYQPELAYFETV 215 (314)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH--HHcCCCHHHHHHHHH
Confidence 67778899999999999999988 31 221 11111 111111122 23444 788998888766554
Q ss_pred -hcCCChhHHHHHHHhchH
Q 009395 363 -KFGMPMGPFRLADLVGFG 380 (535)
Q Consensus 363 -g~G~p~GPf~~~D~~Gld 380 (535)
-+ .|-.+++-.-|+.
T Consensus 216 ~~~---~g~~~l~~e~g~~ 231 (314)
T TIGR00465 216 HEL---KLIVDLIYEGGIT 231 (314)
T ss_pred HHH---HHHHHHHHHhcHH
Confidence 22 5777777777774
No 66
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.35 E-value=3.8e-11 Score=122.61 Aligned_cols=197 Identities=16% Similarity=0.148 Sum_probs=121.0
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 225 (535)
|+||+|||+|.||+.+|..|+++|++|++||++++.++........ .....+ . .....+..+++.+ .++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~---~~~~~~-~------~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADREN---PRYLPG-I------KLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcc---cccCCC-C------cCCCCeEEeCCHHHHHh
Confidence 3689999999999999999999999999999999887655421000 000000 0 0001233344543 567
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH-------HHHhhcCCCCcEEeecccCCCC-------C
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-------LIGERTYSKDRIVGAHFFSPAH-------V 291 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-------~l~~~~~~~~r~ig~h~~~P~~-------~ 291 (535)
+||+||.|+|. .....++.++.+.+++++++++.++++.++ .+.+..+..... .....|.. .
T Consensus 71 ~~D~vi~~v~~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~~~P~~~~~~~~g~ 146 (325)
T PRK00094 71 DADLILVAVPS--QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVLSGPSFAKEVARGL 146 (325)
T ss_pred CCCEEEEeCCH--HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEEECccHHHHHHcCC
Confidence 99999999986 356788889999888899888777665542 223322210011 11112321 1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccch---------------------hhhhHH----HHHHHHHH
Q 009395 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFA---------------------VNRMFF----PYTQAAFL 346 (535)
Q Consensus 292 ~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i---------------------~nri~~----~~~~ea~~ 346 (535)
..++.+ .+ .+.+.++.+.++++..|..+....|..|.. .++.+. ..++|+..
T Consensus 147 ~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~ 223 (325)
T PRK00094 147 PTAVVI-AS--TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITR 223 (325)
T ss_pred CcEEEE-Ee--CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 123333 32 368889999999999998777766543311 222222 33677777
Q ss_pred HHH-cCCCHHHHHHH
Q 009395 347 LVE-RGTDLYLIDRA 360 (535)
Q Consensus 347 l~~-~G~~~~~ID~a 360 (535)
+.+ .|++++.+...
T Consensus 224 la~~~G~d~~~~~~~ 238 (325)
T PRK00094 224 LGVALGANPETFLGL 238 (325)
T ss_pred HHHHhCCChhhhhcc
Confidence 765 57776666543
No 67
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.35 E-value=1.5e-11 Score=125.66 Aligned_cols=138 Identities=12% Similarity=0.081 Sum_probs=103.2
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 148 KKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
++|+|||+ |.||+++|..|.+. |++|+.+|++.+.. ....+.+.
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~~----------------------------------~~~~~~v~ 50 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPGS----------------------------------LDPATLLQ 50 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcccc----------------------------------CCHHHHhc
Confidence 58999999 99999999999864 89999999852110 11124478
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhh---cCCCceeeecCCcCc--HHHHHhhcCCCCcEEeecccCCCCC-----CCEE
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKY---CPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHV-----MPLL 295 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~---~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~~-----~~lv 295 (535)
+||+||.|+|. ....++++++.++ ++++++|++.+|+.. ++.+ .....+|+|.||+..++. +..+
T Consensus 51 ~aDlVilavPv--~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~~ 125 (370)
T PRK08818 51 RADVLIFSAPI--RHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRVM 125 (370)
T ss_pred CCCEEEEeCCH--HHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCeE
Confidence 99999999994 4667889998876 689999988888762 2332 233347999999986643 3445
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 296 eiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~ 326 (535)
.+++. ..++.++.++++++.+|..++.+.
T Consensus 126 iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~ 154 (370)
T PRK08818 126 VVCEA--RLQHWSPWVQSLCSALQAECVYAT 154 (370)
T ss_pred EEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence 56665 344557889999999999988886
No 68
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.34 E-value=6.2e-11 Score=116.92 Aligned_cols=181 Identities=13% Similarity=0.093 Sum_probs=122.3
Q ss_pred eEEEEeCChhhHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009395 149 KVAILGGGLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (535)
||+|||+|.||.+|+..|.++|++ +.++|+++++.+...+. .......++. +.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~----------------------~~~~~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAER----------------------FPKVRIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHH----------------------cCCceEeCCHHHHH
Confidence 799999999999999999999864 57899998876543311 0011222333 346
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCC
Q 009395 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (535)
Q Consensus 225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts 304 (535)
.+||+||.|+|+ +...+++.++. +.++.+++|..++++++.+...++...+++..||+.|.....-+..+...
T Consensus 60 ~~aDvVilav~p--~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~--- 132 (258)
T PRK06476 60 DRSDVVFLAVRP--QIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP--- 132 (258)
T ss_pred HhCCEEEEEeCH--HHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC---
Confidence 789999999983 45567777662 45777888888999999999988665678889998876543333333221
Q ss_pred HHHHHHHHHHHHhcCCceEEeCC--cccc-----hhhhhHHHHHHHHHHHH-HcCCCHHHHHHHHH
Q 009395 305 PQVIVDLLDIGKKIKKTPIVVGN--CTGF-----AVNRMFFPYTQAAFLLV-ERGTDLYLIDRAIT 362 (535)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~i~v~d--~~G~-----i~nri~~~~~~ea~~l~-~~G~~~~~ID~a~~ 362 (535)
.+.++++++.+|..+.+..+ ...+ .... ++.++.++..+. ..|+++++..+++.
T Consensus 133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~-~~~~~~~~~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT-YFGILETATGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 25788999999987764432 1111 1111 123445555554 57899888777664
No 69
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.34 E-value=1.5e-11 Score=127.65 Aligned_cols=198 Identities=16% Similarity=0.218 Sum_probs=120.8
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (535)
+||+|||+|.||.++|..++. |++|++||+++++++.+.+.+...++..++. .......+++.+++. +.+.+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~------~l~~~~~~l~~t~~~~~~~~~ 73 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQ------FLQSDKIHFNATLDKNEAYRD 73 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHH------HHHhCCCcEEEecchhhhhcC
Confidence 379999999999999988875 9999999999999987765332211111110 000111244445554 45689
Q ss_pred CCEEEEeccCCh---------HHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEeecccCCCCC--C
Q 009395 227 VDMVIEAIIENV---------SLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPAHV--M 292 (535)
Q Consensus 227 aDlVI~avpe~~---------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~P~~~--~ 292 (535)
||+||+|||++. ....++++.+.+ ++++.+++ ..||+++. ++...+. +. ++.| +|... +
T Consensus 74 ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV-~~STv~pgtt~~l~~~~~--~~--~v~~-~PE~l~~G 146 (388)
T PRK15057 74 ADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMV-IKSTVPVGFTAAMHKKYR--TE--NIIF-SPEFLREG 146 (388)
T ss_pred CCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEE-EeeecCCchHHHHHHHhh--cC--cEEE-CcccccCC
Confidence 999999999763 334566677776 57777665 45666654 3333221 11 2333 44322 1
Q ss_pred CE--------EEEEeCCCCCHHHHHHHHHHHHh--cCCc-eEEeCCc-ccc---hhhhhHH----HHHHHHHHHHH-cCC
Q 009395 293 PL--------LEIVRTNQTSPQVIVDLLDIGKK--IKKT-PIVVGNC-TGF---AVNRMFF----PYTQAAFLLVE-RGT 352 (535)
Q Consensus 293 ~l--------veiv~~~~ts~e~~~~~~~l~~~--lGk~-~i~v~d~-~G~---i~nri~~----~~~~ea~~l~~-~G~ 352 (535)
.+ ..++.+ +++..+.+.+++.. ++.. ++++.+. .+. ++++++. +++||...+.+ .|+
T Consensus 147 ~a~~d~~~p~rvv~G~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~Gi 223 (388)
T PRK15057 147 KALYDNLHPSRIVIGE---RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGL 223 (388)
T ss_pred cccccccCCCEEEEEc---CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 12 223333 34566777777754 5543 3345542 222 3455543 46899999986 699
Q ss_pred CHHHHHHHHH
Q 009395 353 DLYLIDRAIT 362 (535)
Q Consensus 353 ~~~~ID~a~~ 362 (535)
|++++-+++.
T Consensus 224 D~~eV~~a~~ 233 (388)
T PRK15057 224 NTRQIIEGVC 233 (388)
T ss_pred CHHHHHHHhc
Confidence 9999999884
No 70
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.34 E-value=2.1e-12 Score=122.34 Aligned_cols=98 Identities=23% Similarity=0.263 Sum_probs=90.1
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|++||++++|+||+++||||+|||.++++.+|.+|+++|+.++ |
T Consensus 191 ~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~-~----------------------------------- 234 (290)
T KOG1680|consen 191 MILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNS-P----------------------------------- 234 (290)
T ss_pred HHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999973 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~ 134 (535)
.++.+.|+.++.+.+.++.+++..|...|...+.+++.++++.+|.+||++++.
T Consensus 235 ~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~ 288 (290)
T KOG1680|consen 235 LVVRADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFS 288 (290)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCcccc
Confidence 256678999999999999999999999999999999999999999998887653
No 71
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.34 E-value=2.2e-12 Score=143.90 Aligned_cols=88 Identities=22% Similarity=0.283 Sum_probs=82.9
Q ss_pred CcccchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCh---hHHHHHHHhchHHHHHHHHHHHHhCCCCCccC
Q 009395 327 NCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKS 400 (535)
Q Consensus 327 d~~G~i~nri~~~~~~ea~~l~~~G~--~~~~ID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~ 400 (535)
..+||++||++.++++||++++++|+ +++|||.+|+ |+|||+ |||+++|.+|+|.+.++++.++..+++++.|+
T Consensus 613 ~~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~ 692 (708)
T PRK11154 613 LSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPC 692 (708)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCC
Confidence 36899999999999999999999996 9999999999 999997 99999999999999999999999999988899
Q ss_pred ccHHHHHHCCCCCccCCceee
Q 009395 401 MIIPIMQEDKRAGETTRKGFY 421 (535)
Q Consensus 401 ~~l~~~~~~G~~G~k~g~GFY 421 (535)
+++.+|+++| ++||
T Consensus 693 ~~l~~~~~~~-------~~f~ 706 (708)
T PRK11154 693 ERLVEMAERG-------ESFY 706 (708)
T ss_pred HHHHHHHHcC-------CCCC
Confidence 9999999986 6686
No 72
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.34 E-value=6e-11 Score=116.99 Aligned_cols=145 Identities=19% Similarity=0.203 Sum_probs=112.7
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (535)
+||+|||+|+||++|+..+.++|. +++++|++++.. + .....++.+.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~------------~~~~~~~~~~ 54 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------P------------FVYLQSNEEL 54 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------C------------eEEeCChHHH
Confidence 479999999999999999999873 499999886542 0 0011222244
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCC-EEEEEeCCC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRTNQ 302 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~-lveiv~~~~ 302 (535)
+.+||+||.|+| +....+++.++.++++++ +++|..++++++.+...++...+++..+|+.|..... .+.++++..
T Consensus 55 ~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~ 131 (260)
T PTZ00431 55 AKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNN 131 (260)
T ss_pred HHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCC
Confidence 678999999997 556789999998877754 5678899999999998876555688899988876644 445667778
Q ss_pred CCHHHHHHHHHHHHhcCCceEE
Q 009395 303 TSPQVIVDLLDIGKKIKKTPIV 324 (535)
Q Consensus 303 ts~e~~~~~~~l~~~lGk~~i~ 324 (535)
++++..+.+..+++.+|....+
T Consensus 132 ~~~~~~~~v~~l~~~~G~~~~v 153 (260)
T PTZ00431 132 VDSTDKKKVIDIFSACGIIQEI 153 (260)
T ss_pred CCHHHHHHHHHHHHhCCcEEEE
Confidence 8999999999999999986654
No 73
>PLN02600 enoyl-CoA hydratase
Probab=99.34 E-value=3.6e-12 Score=124.97 Aligned_cols=97 Identities=21% Similarity=0.306 Sum_probs=87.9
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|||++++++++.++++++++.+ |
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~-p----------------------------------- 195 (251)
T PLN02600 152 LIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKG-P----------------------------------- 195 (251)
T ss_pred HHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999863 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....+++++++.|.+.+..++.++++++++++|++||+++.
T Consensus 196 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 248 (251)
T PLN02600 196 LAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVY 248 (251)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence 26667899999888888999999999999999999999999999999987653
No 74
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.33 E-value=4.2e-12 Score=124.78 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=88.0
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 199 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNA-P----------------------------------- 199 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999863 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~ 134 (535)
.+...+|++++.....+++++++.|.+.+..++.|+|+++++.+|++||++++.
T Consensus 200 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~ 253 (255)
T PRK08150 200 LTNFAVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVK 253 (255)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 256678899988877889999999999999999999999999999999987763
No 75
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.33 E-value=3.1e-11 Score=127.69 Aligned_cols=190 Identities=15% Similarity=0.145 Sum_probs=125.4
Q ss_pred eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc----cc
Q 009395 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE----SF 224 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----~~ 224 (535)
+|+|||+|.||.+||..|+++|++|++||+++++.+.+.+. ...|. .+....+++ .+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~--------~~~g~-----------~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE--------HAKGK-----------KIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh--------ccCCC-----------CceecCCHHHHHhhc
Confidence 48999999999999999999999999999999988765421 00010 011122222 34
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHH--HHhhc-CCCCcEEeecccCCC---CCCCEEEEE
Q 009395 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL--IGERT-YSKDRIVGAHFFSPA---HVMPLLEIV 298 (535)
Q Consensus 225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~--l~~~~-~~~~r~ig~h~~~P~---~~~~lveiv 298 (535)
+.+|+||.|||.+.. ..+++.++.+.+.++.||++.+++.+.+. ..+.+ ....+|+++.....+ ..++ .++
T Consensus 62 ~~~dvIil~v~~~~~-v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~--~im 138 (467)
T TIGR00873 62 ERPRKIMLMVKAGAP-VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP--SIM 138 (467)
T ss_pred CCCCEEEEECCCcHH-HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC--cCC
Confidence 679999999997654 46788889999999998877665544432 22223 222334443222111 1233 344
Q ss_pred eCCCCCHHHHHHHHHHHHhcCCce------EEeCCc-ccc---hhh-hhHHH---HHHHHHHHHH--cCCCHHHHHHHHH
Q 009395 299 RTNQTSPQVIVDLLDIGKKIKKTP------IVVGNC-TGF---AVN-RMFFP---YTQAAFLLVE--RGTDLYLIDRAIT 362 (535)
Q Consensus 299 ~~~~ts~e~~~~~~~l~~~lGk~~------i~v~d~-~G~---i~n-ri~~~---~~~ea~~l~~--~G~~~~~ID~a~~ 362 (535)
.| .++++++.++++++.++... .++++. .|. +++ -+.+. .+.|++.++. .|++++++-.++.
T Consensus 139 ~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~ 216 (467)
T TIGR00873 139 PG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFT 216 (467)
T ss_pred CC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 44 37899999999999999763 677742 343 334 44443 3789999874 6899999988885
No 76
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.33 E-value=1.2e-10 Score=113.91 Aligned_cols=152 Identities=15% Similarity=0.178 Sum_probs=113.6
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCC---c-EEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395 147 VKKVAILGGGLMGSGIATALILSNY---P-VILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~---~-V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (535)
.+||+|||+|.||.+++..++++|. + ++++++ ++++.+...+. .+ +..+++.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~-------------~~~~~~~ 60 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------YN-------------VSTTTDW 60 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------cC-------------cEEeCCh
Confidence 4689999999999999999998873 3 777887 46665443211 01 1223344
Q ss_pred -ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCE-EEEEe
Q 009395 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL-LEIVR 299 (535)
Q Consensus 222 -~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~l-veiv~ 299 (535)
+.+.++|+||.|+|.. ..+++++++.+.++ +.+|+|.+.+++++.+.+.++...+++..||+.|...... ..++.
T Consensus 61 ~~~~~~~DiViiavp~~--~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~ 137 (245)
T PRK07634 61 KQHVTSVDTIVLAMPPS--AHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM 137 (245)
T ss_pred HHHHhcCCEEEEecCHH--HHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence 3468899999999854 45788888887766 5688899999999999998866567889999877654332 33345
Q ss_pred CCCCCHHHHHHHHHHHHhcCCceEE
Q 009395 300 TNQTSPQVIVDLLDIGKKIKKTPIV 324 (535)
Q Consensus 300 ~~~ts~e~~~~~~~l~~~lGk~~i~ 324 (535)
....+++..+.+++++..+|..+.+
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~~~ 162 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQLC 162 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 6667899999999999999988864
No 77
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.33 E-value=2.8e-12 Score=142.79 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=79.6
Q ss_pred CcccchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCh---hHHHHHHHhchHHHHHHHHHHHHhCCCCCccC
Q 009395 327 NCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKS 400 (535)
Q Consensus 327 d~~G~i~nri~~~~~~ea~~l~~~G~--~~~~ID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~ 400 (535)
..+||++||++.++++||++++++|+ +|+|||.+++ |+|||+ |||+++|.+|+|.+.++++.++..+++++.|+
T Consensus 606 ~~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~ 685 (699)
T TIGR02440 606 KEASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPC 685 (699)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCC
Confidence 35899999999999999999999996 9999999999 999995 99999999999999999999999999988899
Q ss_pred ccHHHHHHCC
Q 009395 401 MIIPIMQEDK 410 (535)
Q Consensus 401 ~~l~~~~~~G 410 (535)
+++.+|+++|
T Consensus 686 ~~L~~~~~~~ 695 (699)
T TIGR02440 686 QRLVAMAAEK 695 (699)
T ss_pred HHHHHHHHcC
Confidence 9999999985
No 78
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.31 E-value=4e-12 Score=127.55 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=87.1
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|||++++++++.++|++++..+ |
T Consensus 173 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 216 (298)
T PRK12478 173 HSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIP-L----------------------------------- 216 (298)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHhcCHHHH--------HHHHHHhhcccCCCC
Q 009395 81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCK--------SLVHIFFAQRGTSKV 134 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~~~~l~~E~~~f~~~~~s~e~~--------~~i~aF~~kr~~~~~ 134 (535)
.+...+|++++.+.. .+++++++.|...+..++.|+|++ +++.+|++||+++..
T Consensus 217 ~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~ 279 (298)
T PRK12478 217 SQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFG 279 (298)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 266678999988766 468999999999999999999997 599999999988643
No 79
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.31 E-value=5.3e-12 Score=124.34 Aligned_cols=97 Identities=24% Similarity=0.262 Sum_probs=87.9
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||+|||+++++++|.+++++++..+ |
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 201 (257)
T PRK05862 158 LCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFS-L----------------------------------- 201 (257)
T ss_pred HHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
++...+|++++.....++++++..|.+.+..++.|+++++++++|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~ 254 (257)
T PRK05862 202 PAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVF 254 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence 36778999999888888999999999999999999999999999999987653
No 80
>PLN02888 enoyl-CoA hydratase
Probab=99.30 E-value=8.1e-12 Score=123.38 Aligned_cols=99 Identities=25% Similarity=0.309 Sum_probs=88.3
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|||++++.+.|.+++++++..+ |
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 206 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNN-Q----------------------------------- 206 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999853 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHh--cCHHHHHHHHHHhhcccCCCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL--RSETCKSLVHIFFAQRGTSKVP 135 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~--~s~e~~~~i~aF~~kr~~~~~~ 135 (535)
.+...+|++++.....++++++..|.+.+..++ .++++++++++|++||+++|.+
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~ 263 (265)
T PLN02888 207 GMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPS 263 (265)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCC
Confidence 266678999998888889999999998888885 5999999999999999988864
No 81
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.30 E-value=7.7e-12 Score=123.12 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=87.8
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||+|||++++++.+.++++++++.+ |
T Consensus 157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (256)
T TIGR02280 157 LAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQP-T----------------------------------- 200 (256)
T ss_pred HHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999853 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|+.++.....+++++++.|.+.+..++.|+++++++++|++||+++.
T Consensus 201 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 253 (256)
T TIGR02280 201 RGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQF 253 (256)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCC
Confidence 25667899999888888999999999999999999999999999999987764
No 82
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.29 E-value=9.3e-12 Score=122.68 Aligned_cols=97 Identities=31% Similarity=0.467 Sum_probs=87.4
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+++|++++|+||+++||||+|||++++++.|.++++++++.+ |
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 201 (257)
T PRK07658 158 MMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKS-P----------------------------------- 201 (257)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 254 (257)
T PRK07658 202 ATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSF 254 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 26677899999887778999999999999999999999999999999887653
No 83
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.29 E-value=7.3e-12 Score=123.61 Aligned_cols=96 Identities=27% Similarity=0.422 Sum_probs=87.1
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+++|++++|+||+++||||+|||++++++++.++++++++.+ |
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 207 (260)
T PRK05980 164 LLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHS-P----------------------------------- 207 (260)
T ss_pred HHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~ 132 (535)
.+...+|++++.....++++++..|.+.+..++.++++++++.+|++||+++
T Consensus 208 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 259 (260)
T PRK05980 208 VAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA 259 (260)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 2666789999988888899999999999999999999999999999998764
No 84
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.29 E-value=8.5e-12 Score=123.38 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=87.7
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|||++++++.+.++++++++.+ |
T Consensus 167 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 210 (266)
T PRK08139 167 MLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKS-P----------------------------------- 210 (266)
T ss_pred HHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999853 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....++++++..|.+.+..++.++++++++++|++||+++.
T Consensus 211 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK08139 211 AAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEW 263 (266)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 25667899999888888999999999999999999999999999999987664
No 85
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.29 E-value=8.2e-13 Score=138.82 Aligned_cols=158 Identities=16% Similarity=0.117 Sum_probs=116.1
Q ss_pred ceEEEEeCChhhHHHHH--HH----HhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395 148 KKVAILGGGLMGSGIAT--AL----ILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~--~l----~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (535)
.||+|||+|.||.+++. .+ ..+|++|++||++++.++.....+.+.+... .. ..++..++|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~----~~--------~~~I~~ttD~ 68 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL----GA--------PLKIEATTDR 68 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc----CC--------CeEEEEeCCH
Confidence 37999999999998665 23 4568899999999999887665554333211 11 1356677886
Q ss_pred -ccccCCCEEEEecc----------CChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCC--CCcEEeecccCC
Q 009395 222 -ESFKDVDMVIEAII----------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS--KDRIVGAHFFSP 288 (535)
Q Consensus 222 -~~~~~aDlVI~avp----------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~--~~r~ig~h~~~P 288 (535)
+++++||+||++++ ++..+|..+++++.+.+++++++.+++|...+.+++..+.. | +.+.+||.||
T Consensus 69 ~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNP 147 (423)
T cd05297 69 REALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANP 147 (423)
T ss_pred HHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCCh
Confidence 57899999999998 35788999999999999999999999999999999887753 6 8999999999
Q ss_pred CCCC-----CEE--EEEeCCCCCHHHHHHHHHHHHhcCCc
Q 009395 289 AHVM-----PLL--EIVRTNQTSPQVIVDLLDIGKKIKKT 321 (535)
Q Consensus 289 ~~~~-----~lv--eiv~~~~ts~e~~~~~~~l~~~lGk~ 321 (535)
+..+ +.. .++.- ...+......+.+.+|..
T Consensus 148 v~i~t~~~~k~~~~rviG~---c~~~~~~~~~~a~~l~~~ 184 (423)
T cd05297 148 MAELTWALNRYTPIKTVGL---CHGVQGTAEQLAKLLGEP 184 (423)
T ss_pred HHHHHHHHHHhCCCCEEEE---CCcHHHHHHHHHHHhCCC
Confidence 8543 111 22222 112455556666777753
No 86
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.29 E-value=8.7e-12 Score=124.09 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=88.0
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 178 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 221 (277)
T PRK08258 178 LLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGP-T----------------------------------- 221 (277)
T ss_pred HHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999853 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....++++++..|.+.+..++.|+|+++++++|++||+++.
T Consensus 222 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 274 (277)
T PRK08258 222 FAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF 274 (277)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 26667899999888888999999999999999999999999999999988764
No 87
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.29 E-value=1.1e-11 Score=122.30 Aligned_cols=97 Identities=32% Similarity=0.318 Sum_probs=87.2
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||+|||++++++++.++++++++.+ |
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 205 (261)
T PRK08138 162 MALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMP-P----------------------------------- 205 (261)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.++..+|++++.....++++++..|.+.|..++.|+++++++++|++||+++.
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~ 258 (261)
T PRK08138 206 LALAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAY 258 (261)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 26667899999888888999999999999999999999999999999987653
No 88
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.28 E-value=6.5e-12 Score=122.98 Aligned_cols=95 Identities=17% Similarity=0.136 Sum_probs=85.4
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|||++++++.|.++++++++.+ |
T Consensus 155 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 198 (249)
T PRK07938 155 LFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKD-T----------------------------------- 198 (249)
T ss_pred HHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~ 131 (535)
.+...+|++++.....+++++++.|...+..++.++++++++.+|++||++
T Consensus 199 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 199 RVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 256678999988777788999999999999999999999999999999864
No 89
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.27 E-value=1.3e-11 Score=121.96 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=87.3
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|||++++++++.+++++++..+ |
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~-~----------------------------------- 207 (263)
T PRK07799 164 LLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANG-P----------------------------------- 207 (263)
T ss_pred HHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcC-h-----------------------------------
Confidence 5789999999999999999999999999999999999998853 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....+++++++.|.+.+..++.++++++++++|++||+++.
T Consensus 208 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 260 (263)
T PRK07799 208 LAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNF 260 (263)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 26667899999888788999999999999999999999999999999887653
No 90
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=1.5e-11 Score=121.48 Aligned_cols=96 Identities=21% Similarity=0.212 Sum_probs=86.8
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||+|||++++++.+.++++++++.+ |
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~----------------------------------- 206 (262)
T PRK08140 163 LALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQP-T----------------------------------- 206 (262)
T ss_pred HHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~ 132 (535)
.+...+|++++.....+++++++.|.+.+..++.|+++++++.+|++||++.
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 258 (262)
T PRK08140 207 RGLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPR 258 (262)
T ss_pred HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 2566789999988888899999999999999999999999999999998765
No 91
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.26 E-value=1.6e-11 Score=121.25 Aligned_cols=97 Identities=27% Similarity=0.424 Sum_probs=87.9
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 204 (260)
T PRK05809 161 LIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANA-P----------------------------------- 204 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999853 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.+...+++++++.|.+.+..++.|+++++++++|++||+++.
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 257 (260)
T PRK05809 205 IAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNF 257 (260)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 26667899999888888999999999999999999999999999999987654
No 92
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=1.6e-11 Score=120.85 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=87.6
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||++||++++++.+.++++++++.+ |
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~-~----------------------------------- 201 (257)
T PRK06495 158 MMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKS-P----------------------------------- 201 (257)
T ss_pred HHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999863 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....+++++++.|.+.+..++.|+|.++++.+|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~ 254 (257)
T PRK06495 202 LATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVF 254 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCC
Confidence 26667899998887888999999999999999999999999999999987763
No 93
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=1.9e-11 Score=120.45 Aligned_cols=97 Identities=25% Similarity=0.344 Sum_probs=87.3
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 202 (258)
T PRK09076 159 MILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQS-P----------------------------------- 202 (258)
T ss_pred HHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999863 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....++++.+..|.+.|..++.++++++++.+|++||+++.
T Consensus 203 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 255 (258)
T PRK09076 203 SAVAACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQW 255 (258)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 26667899998887778999999999999999999999999999999887653
No 94
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=1.9e-11 Score=120.19 Aligned_cols=97 Identities=22% Similarity=0.237 Sum_probs=86.8
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 155 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 198 (254)
T PRK08252 155 LALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANG-P----------------------------------- 198 (254)
T ss_pred HHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....++++.++.|.+.+..++.++++++++.+|++||+++.
T Consensus 199 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 251 (254)
T PRK08252 199 LAVAASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW 251 (254)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 26667899998887778899999999999999999999999999999877653
No 95
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=1.9e-11 Score=121.20 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=87.2
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|||++++++++.++|++++..+ |
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 213 (269)
T PRK06127 170 LFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNA-P----------------------------------- 213 (269)
T ss_pred HHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....++++.++.|...+..++.|+++++++.+|++||+++.
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~ 266 (269)
T PRK06127 214 LTLRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVF 266 (269)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 25667889998887788899999999999999999999999999999987653
No 96
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=1.7e-11 Score=120.58 Aligned_cols=97 Identities=27% Similarity=0.339 Sum_probs=86.9
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|++||++++|+||+++||||+|||++++++++.+++++++..+ |
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 199 (255)
T PRK06563 156 YLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAA-P----------------------------------- 199 (255)
T ss_pred HHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....+++++++.|...+..++.++++++++.+|++||+++.
T Consensus 200 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 252 (255)
T PRK06563 200 LGVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARF 252 (255)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 25667889998887778899999999999999999999999999999987653
No 97
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.25 E-value=2.1e-11 Score=119.92 Aligned_cols=97 Identities=25% Similarity=0.326 Sum_probs=87.5
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~----------------------------------- 199 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHS-P----------------------------------- 199 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999853 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|+.++.....+++++++.|.+.+..++.++++++++++|++||+++.
T Consensus 200 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~ 252 (255)
T PRK09674 200 LALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDF 252 (255)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 26667899998888888999999999999999999999999999999887653
No 98
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=1.7e-11 Score=120.55 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=85.3
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+++|++++|+||+++||||+|||++++.+.+.+++++++..+ |
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 206 (256)
T PRK06143 163 LLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCG-P----------------------------------- 206 (256)
T ss_pred HHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999853 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccc
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~ 130 (535)
.+...+|+.++.....++++++..|.+.+..++.|+|+++++++|++||+
T Consensus 207 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 207 QALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 26667899999887788999999999999999999999999999999874
No 99
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=2.1e-11 Score=120.42 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=85.7
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|||++++.+.+.+++++++..+ |
T Consensus 163 lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~-~----------------------------------- 206 (262)
T PRK07468 163 VFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCA-P----------------------------------- 206 (262)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.......++.++.|.+.+..++.|+++++++.+|++||+++.
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 259 (262)
T PRK07468 207 GAVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAW 259 (262)
T ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence 26667889888776566788899999999999999999999999999998754
No 100
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=2.2e-11 Score=120.54 Aligned_cols=97 Identities=20% Similarity=0.152 Sum_probs=87.0
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|++||++++|+||+++||||+|||++++++.+.++++++++.+ |
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~----------------------------------- 210 (266)
T PRK05981 167 LSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGP-T----------------------------------- 210 (266)
T ss_pred HHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....+++++++.|...+..++.|+|+++++.+|++||+++.
T Consensus 211 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 263 (266)
T PRK05981 211 VALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF 263 (266)
T ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 25667889998887788999999999999999999999999999999987753
No 101
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.24 E-value=1.8e-10 Score=130.38 Aligned_cols=156 Identities=19% Similarity=0.229 Sum_probs=117.5
Q ss_pred cceEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395 147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (535)
++||+|||+|.||.+++..+.++| ++|++||++++.++.+. +.|... ...++. +.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~ 60 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAEA 60 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHHH
Confidence 578999999999999999999999 47999999988865532 223210 012233 34
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhcC-CCCcEEeecccCCCC----------
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY-SKDRIVGAHFFSPAH---------- 290 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~-~~~r~ig~h~~~P~~---------- 290 (535)
+.+||+||+|+|. ....++++++.+.++++++|++.+|+. .++.+.+.++ .+.||++.||+....
T Consensus 61 ~~~aDvVilavp~--~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~ 138 (735)
T PRK14806 61 VSGADVIVLAVPV--LAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD 138 (735)
T ss_pred hcCCCEEEECCCH--HHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence 7899999999985 467889999999888888776544432 2566666553 356899999985322
Q ss_pred --CCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395 291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 291 --~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~ 326 (535)
....+.+++...++++..+.+.++++.+|..++.++
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 234567888888899999999999999999888886
No 102
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=6.3e-10 Score=111.12 Aligned_cols=199 Identities=17% Similarity=0.194 Sum_probs=135.6
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH--------HHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV--------RANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i--------~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (535)
.+|+|||+|.+|.++|..++++|++|+.+|+|+.+++...... ...+...++ .++++.|+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~------------~g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVE------------SGKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHh------------cCCceEec
Confidence 7899999999999999999999999999999999988765321 111222233 25678899
Q ss_pred CcccccCCCEEEEeccC--------ChHHHHHHHHHHHhhcCCCceeeecCCcCc--HHHHHhh-------cCCCCcEEe
Q 009395 220 DYESFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGER-------TYSKDRIVG 282 (535)
Q Consensus 220 ~~~~~~~aDlVI~avpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~-------~~~~~r~ig 282 (535)
+.+.++.||++|.|||. |+....+..+.|.+++.++.+++.-+++.| .+++... +..+..|--
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 99999999999999973 566677778899999999998875555443 2233322 222222221
Q ss_pred ecccCCCCCC---CEEE------EEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcc-cc---hhhhhH----HHHHHHHH
Q 009395 283 AHFFSPAHVM---PLLE------IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT-GF---AVNRMF----FPYTQAAF 345 (535)
Q Consensus 283 ~h~~~P~~~~---~lve------iv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~-G~---i~nri~----~~~~~ea~ 345 (535)
.| .|-..+ .+.| ++.| .+++..+.+..+++.+-+..+.+.+.. .. +..+++ .++.||-.
T Consensus 158 ay--sPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNEla 233 (436)
T COG0677 158 AY--SPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELA 233 (436)
T ss_pred ee--CccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 11 332211 1222 4444 578999999999999777766666531 21 233333 46788887
Q ss_pred HHHH-cCCCHHHHHHHHH
Q 009395 346 LLVE-RGTDLYLIDRAIT 362 (535)
Q Consensus 346 ~l~~-~G~~~~~ID~a~~ 362 (535)
.+.+ .|++..++-++..
T Consensus 234 li~~~~GIdvwevIeaAn 251 (436)
T COG0677 234 LICNAMGIDVWEVIEAAN 251 (436)
T ss_pred HHHHHhCCcHHHHHHHhc
Confidence 7775 6998887777665
No 103
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.24 E-value=1.5e-10 Score=121.66 Aligned_cols=201 Identities=15% Similarity=0.125 Sum_probs=126.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (535)
+||+|||+|.||.++|..|+. |++|++||+++++++...+...... +. ...+... .+++.++++.+.+++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~----e~---~~~~l~~-~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNL----ET---TEEELRE-ARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCC----CC---CHHHHHh-hCCeeEEeCHHHHcCC
Confidence 689999999999999999877 6999999999999887642211000 00 0011111 2356677777788999
Q ss_pred CEEEEeccCCh--------HHHHHHHHHHHhhcCCCceeeecCCcCcHHHHH----hhcCC--C----CcEEeecccCCC
Q 009395 228 DMVIEAIIENV--------SLKQQIFADLEKYCPPHCILASNTSTIDLNLIG----ERTYS--K----DRIVGAHFFSPA 289 (535)
Q Consensus 228 DlVI~avpe~~--------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~----~~~~~--~----~r~ig~h~~~P~ 289 (535)
|++|.|||.+. .......+.|.++++++.+++ ..||+++.... ..+.. . ..|.-. ++|.
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI-~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~--~~PE 154 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVV-YESTVYPGCTEEECVPILARMSGMTFNQDFYVG--YSPE 154 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEE-EecCCCCcchHHHHHHHHHhccCCCcCCCeeEe--eCCC
Confidence 99999998542 333333457888898888775 45555543222 11211 0 111111 1232
Q ss_pred CC---------CCEEEEEeCCCCCHHHHHHHHHHHHhcC-CceEEeCCc-ccc---hhhhhHH----HHHHHHHHHHH-c
Q 009395 290 HV---------MPLLEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGNC-TGF---AVNRMFF----PYTQAAFLLVE-R 350 (535)
Q Consensus 290 ~~---------~~lveiv~~~~ts~e~~~~~~~l~~~lG-k~~i~v~d~-~G~---i~nri~~----~~~~ea~~l~~-~ 350 (535)
.. ..+-.++.|. +++..+.+..+++.+. ..++++.+. .+. ++++++. +++||+..+.+ .
T Consensus 155 ~v~~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~ 232 (425)
T PRK15182 155 RINPGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRL 232 (425)
T ss_pred cCCCCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 1222355553 5778889999999875 335666542 222 4555554 46899999987 6
Q ss_pred CCCHHHHHHHHH
Q 009395 351 GTDLYLIDRAIT 362 (535)
Q Consensus 351 G~~~~~ID~a~~ 362 (535)
|+|+.++-+++.
T Consensus 233 GiD~~~v~~a~~ 244 (425)
T PRK15182 233 NIDTEAVLRAAG 244 (425)
T ss_pred CcCHHHHHHHhc
Confidence 999999988865
No 104
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=2.7e-11 Score=120.01 Aligned_cols=97 Identities=22% Similarity=0.236 Sum_probs=87.2
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+++|++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 210 (266)
T PRK09245 167 MAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANP-P----------------------------------- 210 (266)
T ss_pred HHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999863 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....++++.+..|.+.+..++.|+|+++++.+|++||+++.
T Consensus 211 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK09245 211 HALRLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVF 263 (266)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCC
Confidence 26667899999887788999999999999999999999999999999987653
No 105
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=2.5e-11 Score=119.91 Aligned_cols=97 Identities=20% Similarity=0.221 Sum_probs=86.3
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||+|||++++.+++.+++++++..+ |
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 205 (262)
T PRK05995 162 YFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANS-P----------------------------------- 205 (262)
T ss_pred HHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHH-HHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....++++. ++.|...+..++.|+++++++.+|++||+++.
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~ 259 (262)
T PRK05995 206 QAVRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAW 259 (262)
T ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 266678999988777788888 88999999999999999999999999987764
No 106
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=2.8e-11 Score=119.41 Aligned_cols=97 Identities=21% Similarity=0.300 Sum_probs=87.5
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||++||++++++.+.+++++++..+ |
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 204 (260)
T PRK07657 161 LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNG-P----------------------------------- 204 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|+.++.....++++++..|.+.+..++.|+++++++++|+++|+++.
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~ 257 (260)
T PRK07657 205 IAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY 257 (260)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 26667899999888788999999999999999999999999999999987653
No 107
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.23 E-value=3.3e-10 Score=108.91 Aligned_cols=163 Identities=18% Similarity=0.163 Sum_probs=109.5
Q ss_pred ceEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
+||+||| +|.||++++..|+++|++|+++++++++.+......... ....|. . ..+..+++.+.+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~---~~~~g~-~--------~~~~~~~~~ea~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEE---LGHGGS-D--------IKVTGADNAEAAKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhh---ccccCC-C--------ceEEEeChHHHHhc
Confidence 4799997 899999999999999999999999998876544221110 000110 0 01222334456889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH-----------------HHHHhhcCCCCcEEeecccCCC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-----------------NLIGERTYSKDRIVGAHFFSPA 289 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-----------------~~l~~~~~~~~r~ig~h~~~P~ 289 (535)
+|+||.|+|. ....++++++.+.++. +++++.+.+++. +.+++.++...+++...++.|.
T Consensus 69 aDvVilavp~--~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a 145 (219)
T TIGR01915 69 ADVVILAVPW--DHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA 145 (219)
T ss_pred CCEEEEECCH--HHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence 9999999984 3456777887766654 777777776665 3466666433688888665443
Q ss_pred CC-------CCEEEEEeCCCCCHHHHHHHHHHHHhc-CCceEEeCC
Q 009395 290 HV-------MPLLEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGN 327 (535)
Q Consensus 290 ~~-------~~lveiv~~~~ts~e~~~~~~~l~~~l-Gk~~i~v~d 327 (535)
.. .+...++.|+ +++..+.+.++.+.+ |..|+.++.
T Consensus 146 ~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 146 VLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred HHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 21 1222334554 567888899999999 999988763
No 108
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.23 E-value=2.8e-11 Score=120.33 Aligned_cols=97 Identities=24% Similarity=0.194 Sum_probs=86.2
Q ss_pred CccCCCCCChhHHHhCCCcceecCC-CchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~-~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (535)
|+|||++++|+||+++||||+|||+ +++.+.+.++++++++.+ |
T Consensus 175 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~-p---------------------------------- 219 (275)
T PLN02664 175 LALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKS-P---------------------------------- 219 (275)
T ss_pred HHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCC-H----------------------------------
Confidence 5789999999999999999999995 889999999999999863 2
Q ss_pred CCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....+++++++.|...+..++.|+++++++.+|++||++..
T Consensus 220 -~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 272 (275)
T PLN02664 220 -LAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVF 272 (275)
T ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence 25667899998887788999999999999999999999999999999987653
No 109
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=2.7e-11 Score=119.43 Aligned_cols=96 Identities=24% Similarity=0.322 Sum_probs=84.9
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||++||++++++.+.+++++++..+ |
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 201 (259)
T PRK06494 158 MILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACS-P----------------------------------- 201 (259)
T ss_pred HHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999863 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHH--HHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKE--AEDFQKLLRSETCKSLVHIFFAQRGTS 132 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E--~~~f~~~~~s~e~~~~i~aF~~kr~~~ 132 (535)
.+...+|++++.....+++++++.| ...+..++.++++++++.+|++||+++
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~ 255 (259)
T PRK06494 202 LSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPR 255 (259)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence 2666789999988777899999999 557889999999999999999987765
No 110
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=2.6e-11 Score=120.46 Aligned_cols=98 Identities=20% Similarity=0.295 Sum_probs=87.1
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|||++++++++.++++++++...|
T Consensus 172 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p----------------------------------- 216 (272)
T PRK06210 172 LLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSP----------------------------------- 216 (272)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCH-----------------------------------
Confidence 578999999999999999999999999999999999999874112
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....+++++++.|.+.+..++.++++++++.+|++||++..
T Consensus 217 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 269 (272)
T PRK06210 217 ASMAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRF 269 (272)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 26667899999887888999999999999999999999999999999987653
No 111
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.22 E-value=2.2e-11 Score=121.08 Aligned_cols=99 Identities=19% Similarity=0.189 Sum_probs=88.5
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 172 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 215 (278)
T PLN03214 172 LLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLP-S----------------------------------- 215 (278)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP 135 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~ 135 (535)
.+...+|++++.....+++++++.|.+.+..++.|+++++++.+|++|.+.||..
T Consensus 216 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~ 270 (278)
T PLN03214 216 AARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEK 270 (278)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence 2566788999888777889999999999999999999999999999998877754
No 112
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=3e-11 Score=120.00 Aligned_cols=96 Identities=21% Similarity=0.224 Sum_probs=86.0
Q ss_pred CccCCCCCChhHHHhCCCcceecCC-CchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~-~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (535)
|+++|++++|+||+++||||+|||+ +++++.+.+++++++..+ |
T Consensus 173 l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~-~---------------------------------- 217 (272)
T PRK06142 173 LALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKS-P---------------------------------- 217 (272)
T ss_pred HHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCC-H----------------------------------
Confidence 5789999999999999999999986 889999999999998852 2
Q ss_pred CCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (535)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~ 132 (535)
.+...+|+.+++....++++++..|...+..++.|+++++++.+|++||+++
T Consensus 218 -~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~ 269 (272)
T PRK06142 218 -LAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPE 269 (272)
T ss_pred -HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence 2666789999988777899999999999999999999999999999998765
No 113
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=3.3e-11 Score=118.97 Aligned_cols=96 Identities=21% Similarity=0.330 Sum_probs=86.7
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|||++++++++.+++++++..+ |
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~----------------------------------- 205 (260)
T PRK07511 162 LLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGS-P----------------------------------- 205 (260)
T ss_pred HHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~ 132 (535)
.+...+|+.++.+...+++++++.|.+.|..++.++++++++++|+++|+++
T Consensus 206 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~ 257 (260)
T PRK07511 206 NALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPD 257 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCC
Confidence 2566789999988888899999999999999999999999999999998765
No 114
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.21 E-value=3.1e-10 Score=111.74 Aligned_cols=141 Identities=19% Similarity=0.229 Sum_probs=102.8
Q ss_pred HHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccCChH
Q 009395 162 IATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS 239 (535)
Q Consensus 162 iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe~~~ 239 (535)
||+.|.++| ++|+.+|++++.++.+. +.|.++. ..++.+.+.+||+||.|+| +.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~~-----------~~~~~~~~~~~DlvvlavP--~~ 56 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIIDE-----------ASTDIEAVEDADLVVLAVP--VS 56 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSSE-----------EESHHHHGGCCSEEEE-S---HH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCeee-----------ccCCHhHhcCCCEEEEcCC--HH
Confidence 578889999 68999999999887653 3454321 1222567899999999998 45
Q ss_pred HHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhcCCCCcEEeecccCCCC------------CCCEEEEEeCCCCCH
Q 009395 240 LKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------VMPLLEIVRTNQTSP 305 (535)
Q Consensus 240 ~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~------------~~~lveiv~~~~ts~ 305 (535)
...++++++.++++++++|++.+|.. ++..+.+.++...+|+|.||+..+. .+..+.++|++.+++
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 67899999999999999999888865 3445566665567999999997551 257788999999999
Q ss_pred HHHHHHHHHHHhcCCceEEeC
Q 009395 306 QVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 306 e~~~~~~~l~~~lGk~~i~v~ 326 (535)
+.++.+.++++.+|..++.+.
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEMD 157 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE--
T ss_pred HHHHHHHHHHHHCCCEEEEcC
Confidence 999999999999999888875
No 115
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.21 E-value=2e-10 Score=117.43 Aligned_cols=166 Identities=16% Similarity=0.134 Sum_probs=100.0
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (535)
.+||+|||+|.||.+||..|+++|++|++|+++++..+.....-... ... .|. ....++..++++ +.++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~--~~~-~g~-------~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENR--EYL-PGV-------ALPAELYPTADPEEALA 73 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCccc--ccC-CCC-------cCCCCeEEeCCHHHHHc
Confidence 35899999999999999999999999999999988776543210000 000 010 001123344455 4478
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc-----HHHHHhhcCC--CCcE-EeecccCCCC---CCCE
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-----LNLIGERTYS--KDRI-VGAHFFSPAH---VMPL 294 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-----~~~l~~~~~~--~~r~-ig~h~~~P~~---~~~l 294 (535)
+||+||+|+|+.. .++++ +.+++++++++.+.++. ...+++.+.. ..++ +-..|..+.. ..+.
T Consensus 74 ~aD~Vi~~v~~~~--~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~ 147 (328)
T PRK14618 74 GADFAVVAVPSKA--LRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPA 147 (328)
T ss_pred CCCEEEEECchHH--HHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCe
Confidence 9999999999762 24444 45667777776666554 3355554422 0111 1112222111 1123
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc
Q 009395 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (535)
Q Consensus 295 veiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G 330 (535)
..++.+ .+++.++.+++++...|..+....|.-|
T Consensus 148 ~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g 181 (328)
T PRK14618 148 ATVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVG 181 (328)
T ss_pred EEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 333433 3688899999999999987776555333
No 116
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.21 E-value=1.7e-11 Score=131.60 Aligned_cols=97 Identities=9% Similarity=0.010 Sum_probs=89.4
Q ss_pred ccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCCC
Q 009395 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT 81 (535)
Q Consensus 2 lltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (535)
++||++++|+||+++||||+|||++++++++.++|++++..+ | .
T Consensus 446 ~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~-p-----------------------------------~ 489 (550)
T PRK08184 446 AKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLS-P-----------------------------------D 489 (550)
T ss_pred HHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCC-H-----------------------------------H
Confidence 589999999999999999999999999999999999999963 2 2
Q ss_pred cHHHHHHHHHHhhcCChHHH-HHHHHHHHHHHhcCHHHHH---HHHHHhhcccCCCC
Q 009395 82 HPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTSKV 134 (535)
Q Consensus 82 A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~~~~s~e~~~---~i~aF~~kr~~~~~ 134 (535)
|...+|++++.+...+++++ +..|.+.|..++.|+|+++ ++.+|++||+++..
T Consensus 490 a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f~ 546 (550)
T PRK08184 490 ALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQFD 546 (550)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCCC
Confidence 67789999999999999999 9999999999999999999 99999999998653
No 117
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.20 E-value=7.1e-10 Score=111.27 Aligned_cols=202 Identities=17% Similarity=0.261 Sum_probs=130.6
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (535)
+||+|||+|.+|...+.+|+..||+|+.+|+++++++...+.. +..++.+++++..+ +|+++|+|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence 5899999999999999999999999999999999998877543 23344444443221 4688999996
Q ss_pred cccCCCEEEEeccC--------ChHHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcC--CCCcEEeecccCCC
Q 009395 223 SFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTY--SKDRIVGAHFFSPA 289 (535)
Q Consensus 223 ~~~~aDlVI~avpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~--~~~r~ig~h~~~P~ 289 (535)
+++++|++|.||+. |......+.++|.++++..++++ +-||+|+. .+...+. .+.+-.++- +||-
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~-~NPE 150 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVA-SNPE 150 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEe-cChH
Confidence 58999999999963 55577788889999998866554 56777764 3333221 111111111 2332
Q ss_pred CC----------CCEEEEEeCCCCCHHHHHHHHHHHHhc--CCceEEeCCcc-c----chhhhhHH---HHHHHHHHHHH
Q 009395 290 HV----------MPLLEIVRTNQTSPQVIVDLLDIGKKI--KKTPIVVGNCT-G----FAVNRMFF---PYTQAAFLLVE 349 (535)
Q Consensus 290 ~~----------~~lveiv~~~~ts~e~~~~~~~l~~~l--Gk~~i~v~d~~-G----~i~nri~~---~~~~ea~~l~~ 349 (535)
.. .|--.++... ++.+.+.+.+++... ...|++..+.. . +..|-+++ .++||-..+.+
T Consensus 151 FLREG~Av~D~~~PdRIViG~~--~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice 228 (414)
T COG1004 151 FLREGSAVYDFLYPDRIVIGVR--SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICE 228 (414)
T ss_pred HhcCcchhhhccCCCeEEEccC--ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 1111233322 233455555555443 45566655422 1 33566665 46899999887
Q ss_pred -cCCCHHHHHHHH
Q 009395 350 -RGTDLYLIDRAI 361 (535)
Q Consensus 350 -~G~~~~~ID~a~ 361 (535)
-|++.++|-+++
T Consensus 229 ~~g~D~~~V~~gI 241 (414)
T COG1004 229 KVGADVKQVAEGI 241 (414)
T ss_pred HhCCCHHHHHHHc
Confidence 588988887764
No 118
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.20 E-value=2e-11 Score=130.71 Aligned_cols=97 Identities=10% Similarity=-0.002 Sum_probs=89.1
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|||++++++++.++|++++..+ |
T Consensus 441 ~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 484 (546)
T TIGR03222 441 RDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFS-P----------------------------------- 484 (546)
T ss_pred HHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 4789999999999999999999999999999999999999963 2
Q ss_pred CcHHHHHHHHHHhhcCChHHH-HHHHHHHHHHHhcCHHHHH---HHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~~~~s~e~~~---~i~aF~~kr~~~~ 133 (535)
.|...+|++++.+...+++++ +..|.+.|..++.|+|+++ ++.+|++||+++.
T Consensus 485 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~f 541 (546)
T TIGR03222 485 DALTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQF 541 (546)
T ss_pred HHHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCCC
Confidence 266678999999988999999 9999999999999999999 9999999999865
No 119
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.19 E-value=4.7e-11 Score=117.82 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=85.0
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 201 (261)
T PRK03580 158 MVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSA-P----------------------------------- 201 (261)
T ss_pred HHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHH----HHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAE----DFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~----~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....+++++++.|.. .+..++.++++++++.+|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~ 258 (261)
T PRK03580 202 LAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW 258 (261)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 256678899988877888999988863 78889999999999999999987653
No 120
>PLN02712 arogenate dehydrogenase
Probab=99.19 E-value=2.7e-10 Score=125.78 Aligned_cols=154 Identities=14% Similarity=0.085 Sum_probs=108.6
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 224 (535)
..++|+|||+|.||.++|..|.+.|++|++||++.+. +.+. +.|. ...++.++ +
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~Gv-------------~~~~~~~el~ 422 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLGV-------------SYFSDADDLC 422 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcCC-------------eEeCCHHHHH
Confidence 3478999999999999999999999999999998542 2111 1121 12234433 4
Q ss_pred c-CCCEEEEeccCChHHHHHHHHHHHh-hcCCCceeeecCCc--CcHHHHHhhcCCCCcEEeecccCCCCCC--C---EE
Q 009395 225 K-DVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVM--P---LL 295 (535)
Q Consensus 225 ~-~aDlVI~avpe~~~~k~~v~~~l~~-~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~P~~~~--~---lv 295 (535)
. .||+||.|+|. .....++.++.. .+++++++++.+|+ .+++.+...++...+|++.||+.+.... . +.
T Consensus 423 ~~~aDvVILavP~--~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~ 500 (667)
T PLN02712 423 EEHPEVILLCTSI--LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLA 500 (667)
T ss_pred hcCCCEEEECCCh--HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhh
Confidence 3 58999999994 355677777765 57889999988877 4555666666555679999999876542 1 11
Q ss_pred -----EEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395 296 -----EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 296 -----eiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~ 326 (535)
.++.++....+.++.+.+++..+|..++.+.
T Consensus 501 ~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 501 FVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred hhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 1123344455667777899999999888876
No 121
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.19 E-value=5.6e-11 Score=117.27 Aligned_cols=96 Identities=25% Similarity=0.363 Sum_probs=86.2
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+++|++++|+||+++||||++||++++++.|.+++++++..+ |
T Consensus 160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~-~----------------------------------- 203 (259)
T PRK06688 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGP-A----------------------------------- 203 (259)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~ 132 (535)
.+...+|++++.....++++++..|.+.+..++.++++++++++|++|++++
T Consensus 204 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~ 255 (259)
T PRK06688 204 SALRYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPD 255 (259)
T ss_pred HHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 2555688899888888899999999999999999999999999999988765
No 122
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.19 E-value=4.9e-11 Score=117.67 Aligned_cols=96 Identities=20% Similarity=0.169 Sum_probs=85.8
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||++| ++++.+.+.+++++++..+ |
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~-~----------------------------------- 204 (260)
T PRK07659 162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKP-L----------------------------------- 204 (260)
T ss_pred HHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 57899999999999999999999 7889999999999998852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....+++++++.|.+.+..++.|+++++++.+|++||+++.
T Consensus 205 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 257 (260)
T PRK07659 205 KAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVF 257 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 25667889998887788999999999999999999999999999999987753
No 123
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.17 E-value=7.4e-10 Score=113.90 Aligned_cols=164 Identities=13% Similarity=0.140 Sum_probs=106.1
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CC---HHHHHhhhcccccccCcc
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MT---QEKFEKTISLLTGVLDYE 222 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~---~~~~~~~~~~i~~~~~~~ 222 (535)
++||+|||+|.||+.+|..|+++|++|++||+++. .+... +.|. +. ..+......++..+++.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELR-----------AHGLTLTDYRGRDVRVPPSAIAFSTDPA 69 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHH-----------hcCceeecCCCcceecccceeEeccChh
Confidence 46899999999999999999999999999999653 22221 1111 00 000000112344455666
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH-HHHHhhcCCCCcEEeeccc-----CCCC-----C
Q 009395 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHFF-----SPAH-----V 291 (535)
Q Consensus 223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~ig~h~~-----~P~~-----~ 291 (535)
.+.++|+||+|++.. ...++++.+.+.++++++|++.+.++.. +.+.+.++....+.|.+++ .|.. .
T Consensus 70 ~~~~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~ 147 (341)
T PRK08229 70 ALATADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS 147 (341)
T ss_pred hccCCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence 778999999999754 3467889999999999988887777764 4566666443334444443 2211 1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc
Q 009395 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (535)
Q Consensus 292 ~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G 330 (535)
+. +.+ +. .+.++.+.++++..|.....++|..+
T Consensus 148 g~-l~~--~~---~~~~~~~~~~l~~~g~~~~~~~di~~ 180 (341)
T PRK08229 148 GA-LAI--EA---SPALRPFAAAFARAGLPLVTHEDMRA 180 (341)
T ss_pred Cc-eEe--cC---CchHHHHHHHHHhcCCCceecchhHH
Confidence 11 111 21 24467888999999988888877543
No 124
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.17 E-value=1.2e-10 Score=115.16 Aligned_cols=164 Identities=16% Similarity=0.211 Sum_probs=110.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH-HHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR-VRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK 225 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~-i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 225 (535)
+||+|||+|.||+++|..|+++|++|++|.++++.+++.... .+..| .. |.. ....+..++|++. ++
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~y---Lp-~i~-------lp~~l~at~Dl~~a~~ 70 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKY---LP-GIL-------LPPNLKATTDLAEALD 70 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccc---cC-Ccc-------CCcccccccCHHHHHh
Confidence 689999999999999999999999999999999988775432 11111 11 111 1235677888854 67
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH------HHHH-hhcCCCCcEEeecccC-CCC------C
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL------NLIG-ERTYSKDRIVGAHFFS-PAH------V 291 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~------~~l~-~~~~~~~r~ig~h~~~-P~~------~ 291 (535)
+||+|+.+||. +..+++++++.+.+++++++++.+-++.. +++. +.++. .+ ++ +.. |.+ .
T Consensus 71 ~ad~iv~avPs--~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~-~~-~~--vLSGPs~A~EVa~g 144 (329)
T COG0240 71 GADIIVIAVPS--QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPD-NP-IA--VLSGPSFAKEVAQG 144 (329)
T ss_pred cCCEEEEECCh--HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCC-Ce-EE--EEECccHHHHHhcC
Confidence 79999999995 47789999998889999999888766533 3333 33331 11 22 112 321 1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc
Q 009395 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (535)
Q Consensus 292 ~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G 330 (535)
.+....+.+ .+++..+.++.+|..--.+++...|..|
T Consensus 145 ~pta~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G 181 (329)
T COG0240 145 LPTAVVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIG 181 (329)
T ss_pred CCcEEEEec--CCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence 333334444 4677888888888774455555566555
No 125
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.16 E-value=7.8e-11 Score=115.71 Aligned_cols=93 Identities=23% Similarity=0.178 Sum_probs=82.8
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||+|||++++++.|.++|+++++.+ |
T Consensus 157 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (254)
T PRK08259 157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFP-Q----------------------------------- 200 (254)
T ss_pred HHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999853 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccc
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~ 130 (535)
.+...+|++++.....++++++..|...+..++. +|+++++.+|++|++
T Consensus 201 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 201 TCLRADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 2566789999887777899999999998888887 999999999998775
No 126
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.16 E-value=5.4e-11 Score=117.25 Aligned_cols=96 Identities=17% Similarity=0.227 Sum_probs=81.2
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+++|++++|+||+++||||+|||++++++++.++++++++.+ |
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 204 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKS-P----------------------------------- 204 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999853 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++..... .+..+..|...+..++.|+|+++++.+|++||+++.
T Consensus 205 ~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~ 256 (259)
T TIGR01929 205 MAIRMLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDF 256 (259)
T ss_pred HHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 2566788888776443 345566678899999999999999999999988764
No 127
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.16 E-value=7e-11 Score=116.79 Aligned_cols=97 Identities=16% Similarity=0.253 Sum_probs=84.0
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|||++++.+.+.++++++++.+ |
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 207 (265)
T PRK05674 164 YALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNS-P----------------------------------- 207 (265)
T ss_pred HHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999853 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHH-HHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQK-EAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~-E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....++++++.. |.+.+..++.|+++++++++|++||+++.
T Consensus 208 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~ 261 (265)
T PRK05674 208 QALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAW 261 (265)
T ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCC
Confidence 256678999998888888888765 55678888999999999999999987653
No 128
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.16 E-value=9.6e-11 Score=116.32 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=81.6
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|++||++++|+||+++||||+|||++++++.+.++|+++++.+ |
T Consensus 171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 214 (273)
T PRK07396 171 IWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNS-P----------------------------------- 214 (273)
T ss_pred HHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999853 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~ 134 (535)
.+...+|++++.... ..+...+.|.+.+..++.|+++++++.+|++||+++..
T Consensus 215 ~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~ 267 (273)
T PRK07396 215 MALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFS 267 (273)
T ss_pred HHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCC
Confidence 255678888877643 34445567888899999999999999999999987643
No 129
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.16 E-value=9.4e-11 Score=115.31 Aligned_cols=94 Identities=19% Similarity=0.143 Sum_probs=85.2
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||++||++++.+.+.+++++++..+ |
T Consensus 162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 205 (255)
T PRK07260 162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGS-S----------------------------------- 205 (255)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccc
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~ 130 (535)
.+...+|+.++.....++++++..|...+..++.|+++++++.+|++||+
T Consensus 206 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 206 NSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 25667899999887888999999999999999999999999999999874
No 130
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=99.15 E-value=9.7e-11 Score=118.56 Aligned_cols=126 Identities=21% Similarity=0.401 Sum_probs=94.5
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
.+||+|||+|.||.++|..++..|+ +|+++|++++.+..-. ++..... .......++..++++++++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~------ld~~~~~------~~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKA------LDISHSN------VIAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHH------HHHHhhh------hccCCCeEEEECCCHHHhC
Confidence 3699999999999999999999996 9999999998753211 1111110 0011123566668889999
Q ss_pred CCCEEEEec-------------------cCChHHHHHHHHHHHhhcCCC-ceeeecCCcCcHHHHHhhcCCC-CcEEeec
Q 009395 226 DVDMVIEAI-------------------IENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH 284 (535)
Q Consensus 226 ~aDlVI~av-------------------pe~~~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l~~~~~~~-~r~ig~h 284 (535)
+||+||++. +++..+++++.+++.+++++. .|++||.+.+....++...+.| .|++|++
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 999999955 557788999999999999774 5778998888777777766665 7899975
No 131
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.15 E-value=1.2e-10 Score=115.81 Aligned_cols=97 Identities=23% Similarity=0.183 Sum_probs=80.9
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||+|||++++++++.++|++++..+ |
T Consensus 174 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 217 (276)
T PRK05864 174 IMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFS-R----------------------------------- 217 (276)
T ss_pred HHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999853 2
Q ss_pred CcHHHHHHHHHHhhcC-ChHHHHHHHHHHHH-HHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQ-KLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~-~~~~~l~~E~~~f~-~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++..... ++++.+..|...+. .++.|+++++++.+|++||+++.
T Consensus 218 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~ 272 (276)
T PRK05864 218 PGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVF 272 (276)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence 2566788988877654 68888887875432 35789999999999999987653
No 132
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.14 E-value=1.2e-10 Score=114.96 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=82.6
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 160 l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 203 (261)
T PRK11423 160 MFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA-P----------------------------------- 203 (261)
T ss_pred HHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999853 2
Q ss_pred CcHHHHHHHHHHhhc-CCh-HHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVV-SGP-RAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~-~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.... .+. +..++.|.+.+..++.|+|+++++.+|++||+++.
T Consensus 204 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~ 258 (261)
T PRK11423 204 LAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVF 258 (261)
T ss_pred HHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCC
Confidence 256678888876543 233 57788898999999999999999999999987764
No 133
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.13 E-value=1.3e-10 Score=115.35 Aligned_cols=94 Identities=19% Similarity=0.193 Sum_probs=82.2
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|||+++|++.+.+++++++..+ |
T Consensus 168 llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 211 (275)
T PRK09120 168 YIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKN-P----------------------------------- 211 (275)
T ss_pred HHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999853 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHH--HHHHHhcCH-HHHHHHHHHhhccc
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAE--DFQKLLRSE-TCKSLVHIFFAQRG 130 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~--~f~~~~~s~-e~~~~i~aF~~kr~ 130 (535)
.+...+|++++.....+++++++.|.. .+..++.++ |+++++++|++||.
T Consensus 212 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 212 VVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence 266678999998888888899888764 455678898 89999999999987
No 134
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.13 E-value=8.7e-09 Score=101.25 Aligned_cols=148 Identities=19% Similarity=0.178 Sum_probs=98.0
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccCCh
Q 009395 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENV 238 (535)
Q Consensus 159 G~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe~~ 238 (535)
|.+||..|+++||+|++||+++++.+... .+...+.|. ....+..+.+++||+||.|+|.+.
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaGA------------~~AaS~aEAAa~ADVVIL~LPd~a 93 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAGV------------KVVSDDKEAAKHGEIHVLFTPFGK 93 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCCC------------eecCCHHHHHhCCCEEEEecCCHH
Confidence 88999999999999999999987653211 011123332 112233466889999999999654
Q ss_pred HHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhc----CCCCcEEeecccCCCCC----CCEEEEE------eCCCCC
Q 009395 239 SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----YSKDRIVGAHFFSPAHV----MPLLEIV------RTNQTS 304 (535)
Q Consensus 239 ~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~----~~~~r~ig~h~~~P~~~----~~lveiv------~~~~ts 304 (535)
..++++..+.+.++++++++ ++||+++..+...+ ....+-+|+..|+|..+ ..-.-++ .-...+
T Consensus 94 -aV~eVl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~ 171 (341)
T TIGR01724 94 -GTFSIARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMAT 171 (341)
T ss_pred -HHHHHHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccCC
Confidence 44566777888899999775 57778877655443 22333445544444321 1111122 222357
Q ss_pred HHHHHHHHHHHHhcCCceEEeC
Q 009395 305 PQVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~i~v~ 326 (535)
+|+++.+.++.+..|+.++++.
T Consensus 172 ee~i~~~~el~~~~~~~~~~~p 193 (341)
T TIGR01724 172 EEQISKCVELAKSTGKKAYVVP 193 (341)
T ss_pred HHHHHHHHHHHHHhCCCeeecc
Confidence 9999999999999999999885
No 135
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.13 E-value=1.2e-10 Score=130.09 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=76.6
Q ss_pred ccchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCh---hHHHHHHHhchHHHHHHHHHHHHhCCCCCccCcc
Q 009395 329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI 402 (535)
Q Consensus 329 ~G~i~nri~~~~~~ea~~l~~~G~--~~~~ID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~ 402 (535)
+..++||++.++++||++++++|+ +|+|||.+++ ++|||+ |||+++|.+|+|+++++++.+. .+++++.|+++
T Consensus 624 ~~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~ 702 (715)
T PRK11730 624 DEEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEG 702 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHH
Confidence 446899999999999999999994 9999999999 999986 9999999999999999999764 58888889999
Q ss_pred HHHHHHCCCCCccCCceee
Q 009395 403 IPIMQEDKRAGETTRKGFY 421 (535)
Q Consensus 403 l~~~~~~G~~G~k~g~GFY 421 (535)
+++|+++| ++||
T Consensus 703 L~~~v~~~-------~~f~ 714 (715)
T PRK11730 703 LREMAANG-------ESYY 714 (715)
T ss_pred HHHHHHcC-------CCCC
Confidence 99999875 5687
No 136
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.13 E-value=1.2e-09 Score=110.53 Aligned_cols=139 Identities=18% Similarity=0.203 Sum_probs=93.5
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (535)
+||+|||+|.||.++|..|+.+|++|++|++++.. ++ +.+++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------------------------~~~~~~~~ 47 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------------------------------------SLAAVLAD 47 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------------------------CHHHHHhc
Confidence 57999999999999999999999999999997531 11 33578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhh-cCCCceeeecCCcCcHH------HHH-hhcCCCCcEEeecccCCCC------CC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDLN------LIG-ERTYSKDRIVGAHFFSPAH------VM 292 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~~~------~l~-~~~~~~~r~ig~h~~~P~~------~~ 292 (535)
||+||.|+|.. ..+.++.++.++ +++++++++.+.++.+. ++. ..+. ..+++.+ ..|.. ..
T Consensus 48 advvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~-~~~v~~i--~gp~~a~ei~~~~ 122 (308)
T PRK14619 48 ADVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFP-NHPVVVL--SGPNLSKEIQQGL 122 (308)
T ss_pred CCEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcC-CCceEEE--ECCCcHHHHhcCC
Confidence 99999999963 567888888764 67788888776655433 211 1221 1122210 12211 11
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc
Q 009395 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (535)
Q Consensus 293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G 330 (535)
+...++.+ .+.+..+.+++++...|..++..+|..|
T Consensus 123 ~~~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~~d~~G 158 (308)
T PRK14619 123 PAATVVAS--RDLAAAETVQQIFSSERFRVYTNSDPLG 158 (308)
T ss_pred CeEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence 22223333 2688899999999999988887666434
No 137
>PLN02921 naphthoate synthase
Probab=99.13 E-value=1.4e-10 Score=117.31 Aligned_cols=97 Identities=20% Similarity=0.211 Sum_probs=80.1
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||+|||++++++++.+++++++..+ |
T Consensus 225 llltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 268 (327)
T PLN02921 225 MWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNS-P----------------------------------- 268 (327)
T ss_pred HHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999863 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~ 134 (535)
.+...+|++++..... .+.....|...+..++.|+|+++++.+|++||+++..
T Consensus 269 ~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~ 321 (327)
T PLN02921 269 TAIRVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFS 321 (327)
T ss_pred HHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 2566788888876543 3333344558888899999999999999999987653
No 138
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.12 E-value=7.6e-11 Score=116.76 Aligned_cols=70 Identities=26% Similarity=0.305 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCC
Q 009395 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQG 529 (535)
Q Consensus 459 ~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~ 529 (535)
..||+||++.++++||++++.+|++ ++++||.+++.|+|||+|||.++|++|+|+++++++.+++.++++
T Consensus 185 pGFi~NRil~~~~~eA~~l~~eGva-~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~~i~~~~~~~~~~~ 254 (307)
T COG1250 185 PGFIVNRLLAALLNEAIRLLEEGVA-TPEEIDAAMRQGLGLPMGPFELADLIGLDVMLHIMKVLNETLGDD 254 (307)
T ss_pred CceehHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCccHHHHHHHHhHHHHHHHHHHHHHhcCCC
Confidence 4599999999999999999999998 999999999999999999999999999999999999999877744
No 139
>PLN02712 arogenate dehydrogenase
Probab=99.11 E-value=1.8e-09 Score=119.15 Aligned_cols=154 Identities=15% Similarity=0.119 Sum_probs=105.6
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 224 (535)
+.++|+|||+|.||.++|..|.++|++|++||++... +.+. +.| +...++.++ +
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~G-------------v~~~~d~~e~~ 105 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SLG-------------VSFFLDPHDLC 105 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------HcC-------------CEEeCCHHHHh
Confidence 3468999999999999999999999999999998543 2111 112 112334433 3
Q ss_pred -cCCCEEEEeccCChHHHHHHHHHHH-hhcCCCceeeecCCcCc--HHHHHhhcCCCCcEEeecccCCCCC-----CCEE
Q 009395 225 -KDVDMVIEAIIENVSLKQQIFADLE-KYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHV-----MPLL 295 (535)
Q Consensus 225 -~~aDlVI~avpe~~~~k~~v~~~l~-~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~~-----~~lv 295 (535)
.+||+||.|+|. ....+++.++. +.++++++|++.+|... ...+...++...+|+++||+..+.. ....
T Consensus 106 ~~~aDvViLavP~--~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~ 183 (667)
T PLN02712 106 ERHPDVILLCTSI--ISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLR 183 (667)
T ss_pred hcCCCEEEEcCCH--HHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCc
Confidence 469999999984 45678888875 56788998887776542 3445555554457999999875541 1111
Q ss_pred EEEe-----CCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395 296 EIVR-----TNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 296 eiv~-----~~~ts~e~~~~~~~l~~~lGk~~i~v~ 326 (535)
.+.. .+....+.++.+.++++.+|..++.+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 184 FVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred EEEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 2222 222334567788899999999998886
No 140
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.10 E-value=1.9e-10 Score=113.21 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=77.7
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|++||++++|+||+++||||+|||++++++++.++++++++.+ |
T Consensus 158 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~----------------------------------- 201 (256)
T TIGR03210 158 IWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKS-P----------------------------------- 201 (256)
T ss_pred HHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999863 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++......... ...|...+..++.|+++++++.+|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~ 253 (256)
T TIGR03210 202 TAIAIAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPEF 253 (256)
T ss_pred HHHHHHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCCC
Confidence 25667888887764432111 12356788889999999999999999987653
No 141
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=99.10 E-value=2e-10 Score=115.71 Aligned_cols=122 Identities=20% Similarity=0.354 Sum_probs=89.6
Q ss_pred EEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009395 150 VAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (535)
Q Consensus 150 V~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (535)
|+|||+|.||.++|..++.+|+ +|+++|++++..+.....+... . .......+++.+++++++++||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~----~--------~~~~~~~~I~~t~d~~~l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQA----A--------PILGSDTKVTGTNDYEDIAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHh----h--------hhcCCCeEEEEcCCHHHhCCCC
Confidence 6899999999999999999887 9999999977543211111110 0 0111123566667788899999
Q ss_pred EEEEec--------------cCChHHHHHHHHHHHhhcCCCc-eeeecCCcCcHHHHHhhcCC-CCcEEee
Q 009395 229 MVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA 283 (535)
Q Consensus 229 lVI~av--------------pe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~~~~~~-~~r~ig~ 283 (535)
+||+++ +++..+++++++++.++++++. |++||.+.+....+++..+. |.|++|+
T Consensus 69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 999876 6788899999999999998777 56788877666666666554 4688886
No 142
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.09 E-value=2.1e-10 Score=127.86 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=74.3
Q ss_pred ccchhhhhHHHHHHHHHHHHHcC-C-CHHHHHHHHH-hcCCCh---hHHHHHHHhchHHHHHHHHHHHHhCCCCCccCcc
Q 009395 329 TGFAVNRMFFPYTQAAFLLVERG-T-DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI 402 (535)
Q Consensus 329 ~G~i~nri~~~~~~ea~~l~~~G-~-~~~~ID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~ 402 (535)
...++||++.+++||+++++++| + +++|||.++. |+|||+ |||+++|.+|++.+.++++.+ ..+++++.|+++
T Consensus 624 ~~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~-~~~g~~~~p~~~ 702 (714)
T TIGR02437 624 DEEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQY-AELGALYQVTAK 702 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHH-HHhCCCCCCCHH
Confidence 45699999999999999999999 4 9999999999 999997 999999999999999999965 488888889999
Q ss_pred HHHHHHCC
Q 009395 403 IPIMQEDK 410 (535)
Q Consensus 403 l~~~~~~G 410 (535)
+.+|+++|
T Consensus 703 l~~~~~~g 710 (714)
T TIGR02437 703 LREMAKNG 710 (714)
T ss_pred HHHHHHcC
Confidence 99999886
No 143
>PRK08321 naphthoate synthase; Validated
Probab=99.09 E-value=2.5e-10 Score=114.86 Aligned_cols=96 Identities=20% Similarity=0.217 Sum_probs=81.4
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||++||++++++++.+++++++..+ |
T Consensus 200 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 243 (302)
T PRK08321 200 IFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKS-P----------------------------------- 243 (302)
T ss_pred HHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999853 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++..... ..+....|.+.+..++.++++++++.+|++||+++.
T Consensus 244 ~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~ 295 (302)
T PRK08321 244 TAMRMLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDW 295 (302)
T ss_pred HHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 2566788888776543 344455689999999999999999999999987764
No 144
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.08 E-value=2.9e-10 Score=112.23 Aligned_cols=93 Identities=24% Similarity=0.253 Sum_probs=78.1
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||+|||++++++.+.++++++++.+ |
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~-~----------------------------------- 210 (262)
T PRK06144 167 MLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHA-P----------------------------------- 210 (262)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999863 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|+.++..... .+..+.+.+..++.++++++++.+|++||+++.
T Consensus 211 ~a~~~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK06144 211 LTLRATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW 259 (262)
T ss_pred HHHHHHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 2556678888766443 345566788899999999999999999987653
No 145
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.08 E-value=1.6e-10 Score=104.97 Aligned_cols=105 Identities=23% Similarity=0.296 Sum_probs=75.8
Q ss_pred eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccCC
Q 009395 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKDV 227 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~a 227 (535)
||+|||+|.||.++|..++.+|++|++|.++++.++...+. ......+.. ......+..++|++ .++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~-------~~n~~~~~~---~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINET-------RQNPKYLPG---IKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHH-------TSETTTSTT---SBEETTEEEESSHHHHHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh-------CCCCCCCCC---cccCcccccccCHHHHhCcc
Confidence 79999999999999999999999999999999877655421 000000110 01123566778884 58999
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC
Q 009395 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (535)
Q Consensus 228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 265 (535)
|+||.++|.. ..+++++++.+++++++++++.+-++
T Consensus 71 d~IiiavPs~--~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 71 DIIIIAVPSQ--AHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp SEEEE-S-GG--GHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cEEEecccHH--HHHHHHHHHhhccCCCCEEEEecCCc
Confidence 9999999965 45899999999999999888887666
No 146
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.08 E-value=1.8e-10 Score=115.12 Aligned_cols=72 Identities=26% Similarity=0.342 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCCC
Q 009395 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGR 530 (535)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~ 530 (535)
...+|.||++.+++||+++++++|++ +|+|||.++++|+|||+||+.++|.+|+|++.+++..+++.+++++
T Consensus 184 ~~g~i~~Ri~~~~~~ea~~~~~~gv~-~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~ 255 (282)
T PRK05808 184 APGFVVNRILIPMINEAIFVLAEGVA-TAEDIDEGMKLGCNHPIGPLALADLIGLDTCLAIMEVLYEGFGDSK 255 (282)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCCc
Confidence 34699999999999999999999998 8999999999999999999999999999999999999998887644
No 147
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.08 E-value=5e-10 Score=104.29 Aligned_cols=108 Identities=24% Similarity=0.280 Sum_probs=74.8
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH--------HHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV--------RANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i--------~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (535)
|||+|||+|.+|..+|..|+.+|++|+.+|+|++.++...+.. ...+.+.++ -+++++++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~------------~~~l~~t~ 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS------------AGRLRATT 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH------------TTSEEEES
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccc------------cccchhhh
Confidence 5899999999999999999999999999999999988765321 111111111 24677888
Q ss_pred Cccc-ccCCCEEEEeccC--------ChHHHHHHHHHHHhhcCCCceeeecCCcCcHH
Q 009395 220 DYES-FKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (535)
Q Consensus 220 ~~~~-~~~aDlVI~avpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 268 (535)
+.+. +.+||++|.|||. |.....++.+.|.+++.++.+++ .-||+++.
T Consensus 69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvppG 125 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPPG 125 (185)
T ss_dssp EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSSTT
T ss_pred hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEEe
Confidence 8765 8999999999963 45567788899999999988775 45666654
No 148
>PTZ00117 malate dehydrogenase; Provisional
Probab=99.07 E-value=4.1e-10 Score=114.15 Aligned_cols=125 Identities=22% Similarity=0.362 Sum_probs=92.4
Q ss_pred ceEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
+||+|||+|.||.++|..++..| .+|+++|++++.++....++... . .......++..+++++++++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~------~------~~~~~~~~i~~~~d~~~l~~ 73 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHF------S------TLVGSNINILGTNNYEDIKD 73 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhh------c------cccCCCeEEEeCCCHHHhCC
Confidence 48999999999999999999999 59999999987754221111100 0 00011124555678889999
Q ss_pred CCEEEEec--cCCh------------HHHHHHHHHHHhhcCCC-ceeeecCCcCcHHHHHhhcCCC-CcEEeec
Q 009395 227 VDMVIEAI--IENV------------SLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH 284 (535)
Q Consensus 227 aDlVI~av--pe~~------------~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l~~~~~~~-~r~ig~h 284 (535)
||+||+++ |.++ .+++++.+++.+++++. .|++||.+.+....+.+..+.| .|++|++
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99999998 7766 88999999999998777 4677888877666666666555 7888875
No 149
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.06 E-value=2.7e-10 Score=113.82 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCCC
Q 009395 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGR 530 (535)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~ 530 (535)
.++.||++.+++||+++|+++|++ +++|||.+++.|+|||+||+.++|.+|+|++.++++.+++.+++++
T Consensus 190 Gfi~nRi~~~~~~Ea~~ll~eGv~-~~~dID~~~~~g~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~ 259 (286)
T PRK07819 190 GFVVNALLVPYLLSAIRMVESGFA-TAEDIDKAMVLGCAHPMGPLRLSDLVGLDTVKAIADSMYEEFKEPL 259 (286)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCHHHHHHHhccHHHHHHHHHHHHHcCCCC
Confidence 599999999999999999999997 8999999999999999999999999999999999999998887644
No 150
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=99.06 E-value=4.4e-10 Score=112.91 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=81.7
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||+|||++++++.|.+++++++....|
T Consensus 177 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~----------------------------------- 221 (296)
T PRK08260 177 WVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSP----------------------------------- 221 (296)
T ss_pred HHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCCh-----------------------------------
Confidence 578999999999999999999999999999999999999874112
Q ss_pred CcHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCC
Q 009395 81 THPIVCIDVVEAGVVSG-PRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP 135 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~-~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~ 135 (535)
.+...+|++++...... .......|...+..++.++++++++.+|++||++...+
T Consensus 222 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~ 277 (296)
T PRK08260 222 VSVALTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPG 277 (296)
T ss_pred HHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCC
Confidence 25667888888764322 22344668888999999999999999999999876543
No 151
>PRK06223 malate dehydrogenase; Reviewed
Probab=99.06 E-value=6e-10 Score=112.81 Aligned_cols=125 Identities=23% Similarity=0.330 Sum_probs=84.8
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
|+||+|||+|.||..+|..++..|+ +|+++|++++.++.....+.... . ......+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~---~---------~~~~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA---P---------VEGFDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh---h---------hcCCCcEEEeCCCHHHHC
Confidence 5799999999999999999999876 99999999887543221111110 0 001123566667888899
Q ss_pred CCCEEEEec--------------cCChHHHHHHHHHHHhhcCCCc-eeeecCCcCcHHHHHhhcCC-CCcEEee
Q 009395 226 DVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA 283 (535)
Q Consensus 226 ~aDlVI~av--------------pe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~~~~~~-~~r~ig~ 283 (535)
+||+||+++ .++..+++++++++.+.+++.. |++||.+.+-...+....+. +.+++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999986 3466789999999999987653 44565554433333333332 3566665
No 152
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.05 E-value=3e-10 Score=113.84 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCCC
Q 009395 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGR 530 (535)
Q Consensus 459 ~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~ 530 (535)
..+++||++.+++|||++++++|++ +++|||.++..|+|||+||+.++|++|+|+..++++++++.+++++
T Consensus 188 pgfi~nRi~~~~~~ea~~l~~~g~a-~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld~~~~~~~~~~~~~~~~~ 258 (287)
T PRK08293 188 PGYILNSLLVPFLSAALALWAKGVA-DPETIDKTWMIATGAPMGPFGILDIVGLDTAYNITSNWAEATDDEN 258 (287)
T ss_pred CCHhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCcCHHHHHHHhchHHHHHHHHHHHHHhCCcc
Confidence 3599999999999999999999998 9999999999999999999999999999999999999999888764
No 153
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.05 E-value=4.3e-10 Score=110.37 Aligned_cols=91 Identities=16% Similarity=0.255 Sum_probs=79.5
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+++|++++|+||+++||||+|||++++.+++.++++++++.+ |
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 204 (251)
T PRK06023 161 LLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKP-P----------------------------------- 204 (251)
T ss_pred HHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~k 128 (535)
.+...+|++++... .+++.++..|.+.+..++.++++++++++|++|
T Consensus 205 ~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 205 QALQIARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred HHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 25556888887654 468888999999999999999999999999874
No 154
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=99.04 E-value=7.3e-10 Score=108.47 Aligned_cols=94 Identities=18% Similarity=0.124 Sum_probs=81.5
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||.+ +++++.|.++|++++..+ |
T Consensus 152 lll~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~-~----------------------------------- 192 (248)
T PRK06072 152 ILVLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGP-F----------------------------------- 192 (248)
T ss_pred HHHhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999963 467899999999998852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....++++.++.|.+.+..++.|+++++++.+|++||+++.
T Consensus 193 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 245 (248)
T PRK06072 193 QSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKF 245 (248)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCC
Confidence 25667899998887778999999999999999999999999999999987753
No 155
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.03 E-value=6.5e-09 Score=106.63 Aligned_cols=176 Identities=13% Similarity=0.109 Sum_probs=111.9
Q ss_pred CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-c
Q 009395 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-S 223 (535)
Q Consensus 145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 223 (535)
+.++||+|||+|.||+.+|..|+++| +|++|.++++..+...+.- .....+.. . .....++..+++.+ .
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~-------~~~~~l~~-~-~~l~~~i~~t~d~~~a 74 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNH-------RNSRYLGN-D-VVLSDTLRATTDFAEA 74 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcC-------CCcccCCC-C-cccCCCeEEECCHHHH
Confidence 34578999999999999999999999 7999999998876554210 00000100 0 00112345566664 5
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH-------HHHHhhcCCCCcEEeecccCCCC---CCC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-------NLIGERTYSKDRIVGAHFFSPAH---VMP 293 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-------~~l~~~~~~~~r~ig~h~~~P~~---~~~ 293 (535)
++++|+||.|+| ....+++++++.++++++++++|.+.++.. +.+.+.++.....+-..|..+.. ..+
T Consensus 75 ~~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~ 152 (341)
T PRK12439 75 ANCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYA 152 (341)
T ss_pred HhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCC
Confidence 789999999998 446788999999999988877777767764 24445443211122222322211 122
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhh
Q 009395 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVN 334 (535)
Q Consensus 294 lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~n 334 (535)
...++.+. +++..+.+.+++..-+..+....|..|..+-
T Consensus 153 t~~via~~--~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~ 191 (341)
T PRK12439 153 AAAVLAMP--DQHLATRLSPLFRTRRFRVYTTDDVVGVEMA 191 (341)
T ss_pred eEEEEEeC--CHHHHHHHHHHhCCCCEEEEEcCchHHHHHH
Confidence 22233332 6778888888988888777777776665443
No 156
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.02 E-value=7.2e-10 Score=109.55 Aligned_cols=94 Identities=23% Similarity=0.269 Sum_probs=82.8
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+||+ ++.+.+.+++++++..+ |
T Consensus 166 l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~-~----------------------------------- 207 (262)
T PRK07509 166 LTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRS-P----------------------------------- 207 (262)
T ss_pred HHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 578999999999999999999995 37889999999998852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~ 132 (535)
.+...+|+.++.....++++++..|.+.+..++.++++++++.+|++||++.
T Consensus 208 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~ 259 (262)
T PRK07509 208 DAIAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPK 259 (262)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 2566788999988888889999999999999999999999999999998764
No 157
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.02 E-value=4.3e-10 Score=110.19 Aligned_cols=90 Identities=14% Similarity=0.040 Sum_probs=80.7
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|| +++++++.+++++++..+ |
T Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (249)
T PRK05870 159 ALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAP-R----------------------------------- 200 (249)
T ss_pred HHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 57899999999999999999999 679999999999999863 2
Q ss_pred CcHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 009395 81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~k 128 (535)
.+...+|+.++.... .+++++++.|.+.+..++.|+|+++++++|+++
T Consensus 201 ~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 201 ELVLATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 266678999998877 789999999999999999999999999999874
No 158
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.02 E-value=7.7e-10 Score=91.71 Aligned_cols=91 Identities=22% Similarity=0.242 Sum_probs=68.3
Q ss_pred eEEEEeCChhhHHHHHHHHhCC---CcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395 149 KVAILGGGLMGSGIATALILSN---YPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G---~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (535)
||+|||+|.||.+|+..|.++| ++|.++ ++++++.++..++ .+ -.+...++.+.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------~~-----------~~~~~~~~~~~~ 59 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------YG-----------VQATADDNEEAA 59 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------CT-----------TEEESEEHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------hc-----------cccccCChHHhh
Confidence 7999999999999999999999 899965 9999998765421 11 011112344668
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (535)
Q Consensus 225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (535)
++||+||.||| +....++++++ ....++.+++|.+.
T Consensus 60 ~~advvilav~--p~~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 60 QEADVVILAVK--PQQLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHTSEEEE-S---GGGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred ccCCEEEEEEC--HHHHHHHHHHH-hhccCCCEEEEeCC
Confidence 89999999997 44667899999 66778888888765
No 159
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=99.02 E-value=4.1e-10 Score=110.19 Aligned_cols=92 Identities=25% Similarity=0.370 Sum_probs=83.5
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+++|++++|+||+++||||+|+|++++.+.+.+++++++..+ |
T Consensus 154 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 197 (245)
T PF00378_consen 154 LLLTGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKP-P----------------------------------- 197 (245)
T ss_dssp HHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred cccccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCC-H-----------------------------------
Confidence 4689999999999999999999999999999999999999962 1
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~k 128 (535)
.+...+|+.++.......++.+..|.+.+..++.++++++++++|++|
T Consensus 198 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 198 SALRATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 155678899998888888999999999999999999999999999986
No 160
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=99.01 E-value=1.1e-09 Score=107.21 Aligned_cols=95 Identities=16% Similarity=0.279 Sum_probs=78.1
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHH-HHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQW-ALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~-a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (535)
|+|||++++|+||+++||||+|||+. .+.+.++ ++++++.+ |
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~v~~~~--~~~a~~~~a~~la~~~-p---------------------------------- 194 (251)
T TIGR03189 152 LLYSGRSIDGAEGARIGLANAVAEDP--ENAALAWFDEHPAKLS-A---------------------------------- 194 (251)
T ss_pred HHHcCCCCCHHHHHHCCCcceecCcH--HHHHHHHHHHHHHhCC-H----------------------------------
Confidence 57899999999999999999999754 3567776 57888752 2
Q ss_pred CCcHHHHHHHHHHhhcCChHHHH-HHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 80 LTHPIVCIDVVEAGVVSGPRAGL-QKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l-~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.....++++++ ..|.+.+..++.|+|+++++++|++||+++.
T Consensus 195 -~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 248 (251)
T TIGR03189 195 -SSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALW 248 (251)
T ss_pred -HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCC
Confidence 2566788998887777777776 4788889999999999999999999998754
No 161
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.01 E-value=7.3e-09 Score=109.36 Aligned_cols=177 Identities=15% Similarity=0.165 Sum_probs=119.5
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc----ccCCCEEEEe
Q 009395 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES----FKDVDMVIEA 233 (535)
Q Consensus 158 mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----~~~aDlVI~a 233 (535)
||.+||..|+++|++|++|||++++.+...+. .|. . ..+....++++ ++.+|+||.|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~-~--------~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK-G--------KKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC-C--------CCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 89999999999999999999999998765421 010 0 01223334433 3358999999
Q ss_pred ccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH--HHHhhcCCCCcEEeeccc-CCCCC-------CCEEEEEeCCCC
Q 009395 234 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFF-SPAHV-------MPLLEIVRTNQT 303 (535)
Q Consensus 234 vpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~-~P~~~-------~~lveiv~~~~t 303 (535)
||....+ .+++..+.+.+.++.|++..+++.+.+ ..++.+.. .|+||+ .|++. ++ .+++|.
T Consensus 62 v~~g~~v-~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~--siM~GG-- 132 (459)
T PRK09287 62 VKAGAPV-DAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGP--SIMPGG-- 132 (459)
T ss_pred CCCchHH-HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCC--EEEEeC--
Confidence 9987554 567788999999898887655443332 23333321 255655 24432 33 344442
Q ss_pred CHHHHHHHHHHHHhcCCce-------EEeCCc-ccc---hh-hhhHHH---HHHHHHHHHH--cCCCHHHHHHHHH
Q 009395 304 SPQVIVDLLDIGKKIKKTP-------IVVGNC-TGF---AV-NRMFFP---YTQAAFLLVE--RGTDLYLIDRAIT 362 (535)
Q Consensus 304 s~e~~~~~~~l~~~lGk~~-------i~v~d~-~G~---i~-nri~~~---~~~ea~~l~~--~G~~~~~ID~a~~ 362 (535)
++++++.++++++.++... .++++. .|. ++ |-+.+. .+.|++.+++ .|++++++-+++.
T Consensus 133 ~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 133 QKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 6899999999999999876 778753 343 23 444443 4789999987 4899999988875
No 162
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.00 E-value=4.5e-10 Score=112.80 Aligned_cols=70 Identities=21% Similarity=0.157 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCCC
Q 009395 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGR 530 (535)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~ 530 (535)
.++.||++.+++|||++++++|++ +++|||.++..|+|||+|||.++|++|+|+..++++.+++.+++++
T Consensus 189 gfv~nRl~~~~~~ea~~~~~~g~a-~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~ 258 (291)
T PRK06035 189 GFFTTRFIEGWLLEAIRSFEIGIA-TIKDIDEMCKLAFGFPMGPFELMDIIGIDTVYHIAEYLYEETGDPQ 258 (291)
T ss_pred CeeHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhcCCCccCHHHHHHHhhHHHHHHHHHHHHHHcCCCc
Confidence 589999999999999999999998 9999999999999999999999999999999999999999887654
No 163
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=99.00 E-value=9.5e-10 Score=108.96 Aligned_cols=93 Identities=19% Similarity=0.158 Sum_probs=74.2
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|||+++++++|.++|++++..+ |
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 213 (268)
T PRK07327 170 YLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGS-Q----------------------------------- 213 (268)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999853 2
Q ss_pred CcHHHHHHHHHHhhc---CChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVV---SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~---~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.... .+++..+..| ..++.|+++++++.+|++||+++.
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~----~~~~~~~d~~eg~~af~ekr~p~~ 265 (268)
T PRK07327 214 TAIRWTKYALNNWLRMAGPTFDTSLALE----FMGFSGPDVREGLASLREKRAPDF 265 (268)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHH----HHHccChhHHHHHHHHHhcCCCCC
Confidence 255567888875422 2344444444 246789999999999999987764
No 164
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.00 E-value=1.5e-08 Score=93.99 Aligned_cols=153 Identities=22% Similarity=0.249 Sum_probs=103.8
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
|++++|+|+|+||+++|..|+++||+|++-.++. ++.+.+.+. ....++..++.++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~---------------------l~~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAA---------------------LGPLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHh---------------------hccccccCChHHHHh
Confidence 5789999999999999999999999999996654 444433221 112345556677889
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC----------------cHH-HHHhhcCCCCcEEeecccC-
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI----------------DLN-LIGERTYSKDRIVGAHFFS- 287 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~----------------~~~-~l~~~~~~~~r~ig~h~~~- 287 (535)
.||+||.+||- .....+++++...+. +.|+++.|-.+ +.+ .+++.++.. +++.. |++
T Consensus 60 ~aDVVvLAVP~--~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkA-Fn~i 134 (211)
T COG2085 60 LADVVVLAVPF--EAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKA-FNTI 134 (211)
T ss_pred cCCEEEEeccH--HHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhh-hccc
Confidence 99999999983 455788888887776 66776555431 112 344455444 44432 221
Q ss_pred C-------CCC-CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395 288 P-------AHV-MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (535)
Q Consensus 288 P-------~~~-~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d 327 (535)
| .+. .+....+.++ +.+..+.+.++.+.+|..++.++.
T Consensus 135 ~a~~l~~~~~~~~~~~v~vagD--D~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 135 PAAVLADLAKPGGRRDVLVAGD--DAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred CHHHhccCCCcCCceeEEEecC--cHHHHHHHHHHHHhcCcceeeccc
Confidence 1 111 2344445553 788999999999999999999873
No 165
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.99 E-value=1.8e-08 Score=106.91 Aligned_cols=204 Identities=16% Similarity=0.210 Sum_probs=126.5
Q ss_pred cceEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395 147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVR----ANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (535)
++||+|||+|.+|..+|..|+.+| ++|+++|+++++++...+... ..++..+.++ .-.+++++++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcC
Confidence 368999999999999999999885 789999999999887653311 1111111110 1124778888
Q ss_pred cc-cccCCCEEEEeccC-------------ChHHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEee
Q 009395 221 YE-SFKDVDMVIEAIIE-------------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGA 283 (535)
Q Consensus 221 ~~-~~~~aDlVI~avpe-------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~ 283 (535)
++ .+++||++|.|||. |+.....+.++|.++++++++|+ ..||+++. .+...+....+ |.
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv-~~STvp~Gtt~~~~~~l~~~~~--g~ 148 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--GI 148 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEE-EeCCCCCChHHHHHHHHHhhCC--CC
Confidence 75 58999999999952 33366788889999999988765 45555543 33332211100 11
Q ss_pred cc---cCCCCC---------CCEEEEE-eCC--CCCHHHHHHHHHHHHhcCC-ceEEeCCc--c--cchhhhhH----HH
Q 009395 284 HF---FSPAHV---------MPLLEIV-RTN--QTSPQVIVDLLDIGKKIKK-TPIVVGNC--T--GFAVNRMF----FP 339 (535)
Q Consensus 284 h~---~~P~~~---------~~lveiv-~~~--~ts~e~~~~~~~l~~~lGk-~~i~v~d~--~--G~i~nri~----~~ 339 (535)
.| ++|-.. ...-.++ .+. ...++..+.+.+++..+-+ .++.+.+. . .-++.+.+ .+
T Consensus 149 ~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Ia 228 (473)
T PLN02353 149 NFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRIS 228 (473)
T ss_pred CeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHH
Confidence 11 133211 1111233 432 2225678888888888642 45555432 1 12333332 35
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHH
Q 009395 340 YTQAAFLLVE-RGTDLYLIDRAIT 362 (535)
Q Consensus 340 ~~~ea~~l~~-~G~~~~~ID~a~~ 362 (535)
++||-..+.+ .|+|..+|-.++.
T Consensus 229 f~NEla~lce~~giD~~eV~~~~~ 252 (473)
T PLN02353 229 SVNAMSALCEATGADVSQVSHAVG 252 (473)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhC
Confidence 6899888876 5899999988876
No 166
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.97 E-value=8.9e-10 Score=110.49 Aligned_cols=68 Identities=26% Similarity=0.231 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcC
Q 009395 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQ 528 (535)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~ 528 (535)
.++.||++.+++|||++|+++|++ +++|||.++++|+|||+||+.++|.+|+|++.++.+.++..+++
T Consensus 185 Gf~~nRl~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~ 252 (288)
T PRK09260 185 GFVTSRISALVGNEAFYMLQEGVA-TAEDIDKAIRLGLNFPMGPLELGDLVGLDTRLNNLKYLHETLGE 252 (288)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHhCC
Confidence 599999999999999999999997 99999999999999999999999999999999999999887764
No 167
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.97 E-value=7.3e-10 Score=113.25 Aligned_cols=130 Identities=16% Similarity=0.130 Sum_probs=82.7
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHH------------HhhccCCCcchhh-------cccCCCCCchH
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWAL------------DILEHRRPWVATL-------YKTDKIEPLGE 61 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~------------~la~~~~p~~~~~-------~~~~~~~~~~~ 61 (535)
|+|||++++|+||+++||||+|||++++.+...++++ .+.....+. +.. .....++.. .
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~-~ 240 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPA-PASELAAQRAWIDECFAGD-T 240 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCC-CcchhHHHHHHHHHHhCCC-C
Confidence 5789999999999999999999999988766333221 011100000 000 000000000 0
Q ss_pred HHHHHHH--------HHHHHHHh-CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHh-hc-cc
Q 009395 62 AREIFKF--------ARAQARKQ-APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF-AQ-RG 130 (535)
Q Consensus 62 ~~~~~~~--------~~~~~~~~-~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~-~k-r~ 130 (535)
-...+.. +.+.+.+- ..++.+...+|++++.+...+++++++.|...+..++.++|+++++++|+ +| |+
T Consensus 241 ~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~ 320 (342)
T PRK05617 241 VEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRN 320 (342)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCC
Confidence 0011111 12222221 23567899999999998888999999999999999999999999999997 66 54
Q ss_pred CC
Q 009395 131 TS 132 (535)
Q Consensus 131 ~~ 132 (535)
++
T Consensus 321 p~ 322 (342)
T PRK05617 321 PK 322 (342)
T ss_pred CC
Confidence 43
No 168
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.97 E-value=1.6e-09 Score=106.63 Aligned_cols=94 Identities=16% Similarity=0.078 Sum_probs=78.2
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||+|||+++. .+.+++++++..+ |
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~-p----------------------------------- 200 (255)
T PRK07112 159 MTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLN-K----------------------------------- 200 (255)
T ss_pred HHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999987653 5777888888752 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|++++.. ...++++++.|.+.+..++.|+|+++++.+|++||++..
T Consensus 201 ~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 252 (255)
T PRK07112 201 AAVARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPW 252 (255)
T ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCC
Confidence 2566788888765 446788999999999999999999999999999987643
No 169
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.96 E-value=1.7e-09 Score=106.67 Aligned_cols=94 Identities=19% Similarity=0.255 Sum_probs=83.1
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|+|++++|+||+++||||++++ ++.+.+.+++++++..+ |
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~-~----------------------------------- 205 (260)
T PRK07827 164 YYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGS-P----------------------------------- 205 (260)
T ss_pred HHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 578999999999999999999974 58999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~ 132 (535)
.+...+|++++......+++.++.|.+.+..++.++++++++.+|++||+++
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~ 257 (260)
T PRK07827 206 QGLAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPR 257 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 2666789999988888889999999999999999999999999999988754
No 170
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.95 E-value=2.5e-09 Score=104.40 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=77.5
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|++ + +.+.++++++++.+ |
T Consensus 150 l~ltg~~~~a~eA~~~Glv~~v~~---~-~~a~~~a~~l~~~~-~----------------------------------- 189 (243)
T PRK07854 150 MLLGAEKLTAEQALATGMANRIGT---L-ADAQAWAAEIAGLA-P----------------------------------- 189 (243)
T ss_pred HHHcCCCcCHHHHHHCCCcccccC---H-HHHHHHHHHHHhCC-H-----------------------------------
Confidence 578999999999999999999975 2 38899999998852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~ 133 (535)
.+...+|+.++.. .+++++++.|.+.+..++.|+++++++.+|++||++..
T Consensus 190 ~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 240 (243)
T PRK07854 190 LALQHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF 240 (243)
T ss_pred HHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence 2566788888765 56889999999999999999999999999999987653
No 171
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.94 E-value=1.6e-09 Score=109.11 Aligned_cols=71 Identities=24% Similarity=0.282 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCCC
Q 009395 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGR 530 (535)
Q Consensus 459 ~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~ 530 (535)
..++.||++.+++||+++++++|++ +++|||.++++|+|||+||+.++|.+|+|++.++++.++..+++++
T Consensus 186 ~g~i~nri~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~ 256 (295)
T PLN02545 186 PGFIVNRILMPMINEAFYALYTGVA-SKEDIDTGMKLGTNHPMGPLHLADFIGLDTCLSIMKVLHEGLGDSK 256 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCCCHHHHHHHhchHHHHHHHHHHHHHcCCCc
Confidence 3589999999999999999999998 8999999999999999999999999999999999999998887643
No 172
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.92 E-value=5e-09 Score=90.78 Aligned_cols=115 Identities=18% Similarity=0.221 Sum_probs=71.5
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
-.||+|||+|.+|..++..|.++|++|..+ .++.+..+++... +......+..+.+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~----------------------~~~~~~~~~~~~~~ 67 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAF----------------------IGAGAILDLEEILR 67 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccc----------------------cccccccccccccc
Confidence 468999999999999999999999998764 7777666554321 11111222235578
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhh--cCCCceeeecCCcCcHHHHHhhcCCCCcEEeecc
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKY--CPPHCILASNTSTIDLNLIGERTYSKDRIVGAHF 285 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~--~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~ 285 (535)
++|++|.+||++ ....+.++|... ..++.+|+=.+.+.+.+-|............+||
T Consensus 68 ~aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 68 DADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp C-SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred cCCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 999999999987 457888888876 6788877643444566555554444556777776
No 173
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.88 E-value=5e-09 Score=102.66 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=80.7
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|++||++++|+||+++||||+|||++++++.+.++++++++.+ |
T Consensus 158 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 201 (249)
T PRK07110 158 MLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKP-R----------------------------------- 201 (249)
T ss_pred HHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF 126 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~ 126 (535)
.+...+|+.++.....+++++++.|...+..++.|++.++++....
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~ 247 (249)
T PRK07110 202 HSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY 247 (249)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence 2566789999988888999999999999999999999999988643
No 174
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.88 E-value=3.2e-09 Score=106.68 Aligned_cols=70 Identities=23% Similarity=0.277 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCCC
Q 009395 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGR 530 (535)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~ 530 (535)
-+++||++.+++||+++++++|++ +++|||.++++|+|||+||+.++|.+|+|+..++++.++..+++++
T Consensus 187 g~i~nRl~~~~~~ea~~~~~~g~~-~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~~~~~~~~~~~~~~~ 256 (292)
T PRK07530 187 AFIVNRILLPMINEAIYTLYEGVG-SVEAIDTAMKLGANHPMGPLELADFIGLDTCLSIMQVLHDGLADSK 256 (292)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCCc
Confidence 589999999999999999999998 9999999999999999999999999999999999999998876543
No 175
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.84 E-value=3.6e-09 Score=109.51 Aligned_cols=131 Identities=16% Similarity=0.189 Sum_probs=80.5
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHH----------HHhhccC-CCcch-------hh-cccCCCCCchH
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA----------LDILEHR-RPWVA-------TL-YKTDKIEPLGE 61 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a----------~~la~~~-~p~~~-------~~-~~~~~~~~~~~ 61 (535)
|+|||++++|++|+++||||+|||++++.+.+.++. .++...- .++.. .. .....++.. .
T Consensus 168 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~-~ 246 (379)
T PLN02874 168 LALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD-T 246 (379)
T ss_pred HHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC-C
Confidence 578999999999999999999999988876322221 1111100 00000 00 000000000 0
Q ss_pred HHHHHHH------------HHHHHHHh-CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhc---CHHHHHHHHHH
Q 009395 62 AREIFKF------------ARAQARKQ-APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVHIF 125 (535)
Q Consensus 62 ~~~~~~~------------~~~~~~~~-~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~---s~e~~~~i~aF 125 (535)
....+.. +.+.+..- .+++.+...+|++++.+...+++++++.|......++. ++|+++++++|
T Consensus 247 ~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Af 326 (379)
T PLN02874 247 VEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRAL 326 (379)
T ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceE
Confidence 0111111 11222221 23566889999999998888999999999888888877 99999999999
Q ss_pred h-hc-ccCC
Q 009395 126 F-AQ-RGTS 132 (535)
Q Consensus 126 ~-~k-r~~~ 132 (535)
+ +| |+++
T Consensus 327 lidK~r~P~ 335 (379)
T PLN02874 327 VIDKDNAPK 335 (379)
T ss_pred EEcCCCCCC
Confidence 7 77 5444
No 176
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.84 E-value=8.7e-09 Score=101.35 Aligned_cols=95 Identities=24% Similarity=0.256 Sum_probs=82.0
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||++||++++++.|.+++++++..+ |
T Consensus 158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 201 (258)
T PRK06190 158 MSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNN-P----------------------------------- 201 (258)
T ss_pred HHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999863 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcC---HHHHHHHHHHhhcccC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS---ETCKSLVHIFFAQRGT 131 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s---~e~~~~i~aF~~kr~~ 131 (535)
.+...+|++++.....+++++++.|...+..++.| ....+....|..+-++
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 255 (258)
T PRK06190 202 AAVRALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARGRA 255 (258)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhh
Confidence 26667899999888888999999999999999988 6677777777775443
No 177
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=98.84 E-value=2.1e-09 Score=97.93 Aligned_cols=95 Identities=23% Similarity=0.314 Sum_probs=66.8
Q ss_pred ccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCCC
Q 009395 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT 81 (535)
Q Consensus 2 lltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (535)
.+.+|.++|+||++|||||.|||.++|++++.+||+++.+++ |.
T Consensus 181 wfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kS-P~----------------------------------- 224 (282)
T COG0447 181 WFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKS-PT----------------------------------- 224 (282)
T ss_pred hhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcC-hH-----------------------------------
Confidence 467999999999999999999999999999999999999874 41
Q ss_pred cHHHHHHHHHHhhcCChHHHHHH-HHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395 82 HPIVCIDVVEAGVVSGPRAGLQK-EAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (535)
Q Consensus 82 A~~~~~~~i~~~~~~~~~~~l~~-E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~ 134 (535)
|....|.+++..- .+ -+++.. --.+-.-..+|+|++|+..+|++||++...
T Consensus 225 AlR~LK~Afnad~-DG-laG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf~ 276 (282)
T COG0447 225 ALRMLKAAFNADC-DG-LAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDFS 276 (282)
T ss_pred HHHHHHHHhcCCC-ch-hhHHHHhcccceEEEEechhhhhhHHHHhhccCCChH
Confidence 3333333333211 11 122221 111112245899999999999999998653
No 178
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.83 E-value=2.3e-07 Score=86.59 Aligned_cols=189 Identities=14% Similarity=0.175 Sum_probs=126.3
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (535)
++|+.||+|.||..++..|.+.|++|+.||+|+++.+.+. ..|.......+.. ...+..-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~-----------~~ga~~a~sl~el---------~~~L~~p 60 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELK-----------DEGATGAASLDEL---------VAKLSAP 60 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------hcCCccccCHHHH---------HHhcCCC
Confidence 4799999999999999999999999999999999987664 2231110001111 1234555
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCC-CC----C--CCEEEEEeC
Q 009395 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSP-AH----V--MPLLEIVRT 300 (535)
Q Consensus 228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P-~~----~--~~lveiv~~ 300 (535)
-.|-..||-. ++..+++.++.+.+.++.+|+.-..+.--+.+...-.. .-.|+||+.- .+ . ....-++.|
T Consensus 61 r~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l--~~kgi~flD~GTSGG~~G~~~G~~lMiGG 137 (300)
T COG1023 61 RIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLL--AEKGIHFLDVGTSGGVWGAERGYCLMIGG 137 (300)
T ss_pred cEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHH--HhcCCeEEeccCCCCchhhhcCceEEecC
Confidence 7788888853 35688999999999999988876655544333321111 1248888742 11 1 233445556
Q ss_pred CCCCHHHHHHHHHHHHhcCCc---eEEeCC-cccch----hhhhHHH---HHHHHHHHHHcC---CCHHHHHHHHH
Q 009395 301 NQTSPQVIVDLLDIGKKIKKT---PIVVGN-CTGFA----VNRMFFP---YTQAAFLLVERG---TDLYLIDRAIT 362 (535)
Q Consensus 301 ~~ts~e~~~~~~~l~~~lGk~---~i~v~d-~~G~i----~nri~~~---~~~ea~~l~~~G---~~~~~ID~a~~ 362 (535)
+++.++.+.++|+.+.-- -.+++. ..|.+ -|-|=+. .+.|.+.++++. +|.++|-+.++
T Consensus 138 ---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~ 210 (300)
T COG1023 138 ---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWN 210 (300)
T ss_pred ---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence 689999999999987642 245554 34543 3555443 368899999864 48888888877
No 179
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.83 E-value=6.8e-08 Score=98.39 Aligned_cols=165 Identities=16% Similarity=0.060 Sum_probs=102.5
Q ss_pred eEEEEeCChhhHHHHHHHHhCC--------CcEEEEeC-----CHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHhhhcc
Q 009395 149 KVAILGGGLMGSGIATALILSN--------YPVILKEV-----NEKFLEAGIGRVRANLQSRVKK-GKMTQEKFEKTISL 214 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G--------~~V~l~d~-----~~~~~~~~~~~i~~~~~~~~~~-g~~~~~~~~~~~~~ 214 (535)
||+|||+|.||.++|..++.+| ++|++|.+ +++..+...+ . .+. ..++. -....+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~----~----~~n~~ylpg---i~Lp~~ 69 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINT----T----HENVKYLPG---IKLPAN 69 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHh----c----CCCccccCC---CcCCCC
Confidence 6999999999999999999999 99999998 4443322211 1 000 00100 011235
Q ss_pred cccccCcc-cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH--------H-HHhhcCCCCcEEeec
Q 009395 215 LTGVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--------L-IGERTYSKDRIVGAH 284 (535)
Q Consensus 215 i~~~~~~~-~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--------~-l~~~~~~~~r~ig~h 284 (535)
+..++|++ .+++||+||.+||. ...+++++++.++++++.+++|.+-++..+ + +.+.+.. ++.-+
T Consensus 70 i~at~dl~eal~~ADiIIlAVPs--~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~--~~~~l- 144 (342)
T TIGR03376 70 LVAVPDLVEAAKGADILVFVIPH--QFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI--PCGVL- 144 (342)
T ss_pred eEEECCHHHHHhcCCEEEEECCh--HHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC--CeEEe-
Confidence 66777875 57999999999985 467889999999998888888887766543 2 2223322 21111
Q ss_pred ccCCCC------CCCEEEEEeCCCCC--HHHHHHHHHHHHhcCCceEEeCCccc
Q 009395 285 FFSPAH------VMPLLEIVRTNQTS--PQVIVDLLDIGKKIKKTPIVVGNCTG 330 (535)
Q Consensus 285 ~~~P~~------~~~lveiv~~~~ts--~e~~~~~~~l~~~lGk~~i~v~d~~G 330 (535)
.-|.. ..+...++.+...+ .+..+.+++++..--.+++...|..|
T Consensus 145 -sGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~G 197 (342)
T TIGR03376 145 -SGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAG 197 (342)
T ss_pred -eCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCccc
Confidence 12221 12233344443222 77888888888764445555567555
No 180
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.82 E-value=3e-08 Score=101.69 Aligned_cols=173 Identities=14% Similarity=0.046 Sum_probs=104.5
Q ss_pred ceEEEEeCChhhHHHHHHHHhCC-------CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395 148 KKVAILGGGLMGSGIATALILSN-------YPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G-------~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (535)
+||+|||+|.||+++|..++++| ++|.+|.++++. -+...+.++.. ......++.- ....++..++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~---~~N~~ylp~~---~Lp~ni~~ts 85 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTK---HENVKYLPGI---KLPDNIVAVS 85 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhc---CCCcccCCCC---cCCCceEEec
Confidence 68999999999999999999998 799999999762 11111112110 0000111110 1224677777
Q ss_pred Ccc-cccCCCEEEEeccCChHHHHHHHHHHHh--hcCCCceeeecCCcCcH--------HHH-HhhcCCCCcEEeecccC
Q 009395 220 DYE-SFKDVDMVIEAIIENVSLKQQIFADLEK--YCPPHCILASNTSTIDL--------NLI-GERTYSKDRIVGAHFFS 287 (535)
Q Consensus 220 ~~~-~~~~aDlVI~avpe~~~~k~~v~~~l~~--~~~~~~ii~s~tS~~~~--------~~l-~~~~~~~~r~ig~h~~~ 287 (535)
|++ .+++||+||.+|| ++..+++++++.+ .++++++++|.+-++.+ +++ .+.++.+--++. -|..
T Consensus 86 dl~eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~Ls-GPs~ 162 (365)
T PTZ00345 86 DLKEAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALS-GANV 162 (365)
T ss_pred CHHHHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEE-CCCH
Confidence 774 5899999999998 4577899999988 77777788877766543 322 223322211111 1111
Q ss_pred CC---CCCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccc
Q 009395 288 PA---HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF 331 (535)
Q Consensus 288 P~---~~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~ 331 (535)
.. ...+...++.+ .+.+....++++|..--.+++...|..|.
T Consensus 163 A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~Gv 207 (365)
T PTZ00345 163 ANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIGV 207 (365)
T ss_pred HHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCcccc
Confidence 11 11233333344 26788888888887655555565675553
No 181
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.82 E-value=5.1e-08 Score=99.61 Aligned_cols=171 Identities=16% Similarity=0.162 Sum_probs=101.3
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHhhhcccccccCccc-c
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK--MTQEKFEKTISLLTGVLDYES-F 224 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~--~~~~~~~~~~~~i~~~~~~~~-~ 224 (535)
+||+|||+|.||+.+|..|+++|++|++|+++++.++...+. ..+. +... .....+..+++.++ +
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~---------~~~~~~~~~~---~~~~~i~~~~~~~~~~ 68 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK---------RKNLKYLPTC---HLPDNISVKSAIDEVL 68 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc---------CCCcccCCCC---cCCCCeEEeCCHHHHH
Confidence 379999999999999999999999999999998876654321 0000 1000 00123344555543 4
Q ss_pred -cCCCEEEEeccCChHHHHHHHHHHHh-hcCCCceeeecCCcCcH-------HHHHhhcCCCCcEEeecccCCC------
Q 009395 225 -KDVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTIDL-------NLIGERTYSKDRIVGAHFFSPA------ 289 (535)
Q Consensus 225 -~~aDlVI~avpe~~~~k~~v~~~l~~-~~~~~~ii~s~tS~~~~-------~~l~~~~~~~~r~ig~h~~~P~------ 289 (535)
.++|+||.|||. ....++++++.+ ++++++.+++.+.++.. +.+...++.. ++.. +..|.
T Consensus 69 ~~~~Dliiiavks--~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~-~~~~--~~Gp~~a~~~~ 143 (326)
T PRK14620 69 SDNATCIILAVPT--QQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNN-PIAI--LSGPSFAKEIA 143 (326)
T ss_pred hCCCCEEEEEeCH--HHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC-ceEe--ecCCcHHHHHH
Confidence 589999999984 356788999988 88888766666666633 3344444321 2211 01122
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhH
Q 009395 290 HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMF 337 (535)
Q Consensus 290 ~~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~ 337 (535)
...+....+.+ .+.+..+.+.+++..-+.......|..|..+...+
T Consensus 144 ~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~ 189 (326)
T PRK14620 144 EKLPCSIVLAG--QNETLGSSLISKLSNENLKIIYSQDIIGVQIGAAL 189 (326)
T ss_pred cCCCcEEEEec--CCHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHH
Confidence 11121112233 34555666666666666555566676665543333
No 182
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.80 E-value=1.6e-08 Score=99.65 Aligned_cols=93 Identities=30% Similarity=0.424 Sum_probs=80.9
Q ss_pred CccCCCCCChhHHHhCCCcceecCC-CchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~-~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (535)
|++||+.++|+||+++||||++|++ +++++.+.++++++++. |
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~~--~---------------------------------- 205 (257)
T COG1024 162 LLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAAP--P---------------------------------- 205 (257)
T ss_pred HHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHccC--H----------------------------------
Confidence 5799999999999999999999985 69999999999998871 2
Q ss_pred CCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccC
Q 009395 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (535)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~ 131 (535)
.+...+|+.++.+...++++.+..|...+...+.++++++++++|++ |++
T Consensus 206 -~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p 255 (257)
T COG1024 206 -LALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKP 255 (257)
T ss_pred -HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCC
Confidence 15567888888887666889999999999998899999999999999 544
No 183
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.79 E-value=2.4e-07 Score=94.12 Aligned_cols=174 Identities=10% Similarity=0.124 Sum_probs=104.2
Q ss_pred CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCccc
Q 009395 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYES 223 (535)
Q Consensus 145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~ 223 (535)
.+.+||+|||+|.||+.+|..|+++|++|+++.+++. +... +.|. +....-+.....+...++.+.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~ 69 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVR-----------ENGLQVDSVHGDFHLPPVQAYRSAED 69 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHH-----------hCCeEEEeCCCCeeecCceEEcchhh
Confidence 3456899999999999999999999999999999753 2211 1111 000000000011223344455
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH-HHHHhhcCCCCcEEee-ccc-----CCCC---C-C
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGA-HFF-----SPAH---V-M 292 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~ig~-h~~-----~P~~---~-~ 292 (535)
...+|+||.|++... ..++++.+.+.+.+++++++..-++.. +.+.+.++. .++++. .++ .|.. . .
T Consensus 70 ~~~~D~vilavK~~~--~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~-~~v~~g~~~~~a~~~~pg~v~~~~~ 146 (313)
T PRK06249 70 MPPCDWVLVGLKTTA--NALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPA-EHLLGGLCFICSNRVGPGVIHHLAY 146 (313)
T ss_pred cCCCCEEEEEecCCC--hHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEeeeEeEecCCCeEEEECCC
Confidence 778999999998542 256788888888888877777767765 455555543 344442 222 3321 1 1
Q ss_pred CEEEEEeCCCCC-----HHHHHHHHHHHHhcCCceEEeCCcccchhh
Q 009395 293 PLLEIVRTNQTS-----PQVIVDLLDIGKKIKKTPIVVGNCTGFAVN 334 (535)
Q Consensus 293 ~lveiv~~~~ts-----~e~~~~~~~l~~~lGk~~i~v~d~~G~i~n 334 (535)
.-+.+-..+..+ .+..+.+.++++..|.......|....+..
T Consensus 147 g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~ 193 (313)
T PRK06249 147 GRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQ 193 (313)
T ss_pred CcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHh
Confidence 112222222222 466777888888888777666665554433
No 184
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.78 E-value=1.4e-07 Score=88.25 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=82.2
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
+||+|||+ |.||.-++..|.++|++|+ +.+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------------------------------~~~ 31 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------------------------------IKK 31 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------------------------------ECC
Confidence 47999999 9999999999999999985 146
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCC-----CEEEEEeCC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVM-----PLLEIVRTN 301 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~-----~lveiv~~~ 301 (535)
||+||.|+|.+ ...++++++. .++++.+|... .+.+. ..+|+|.||+..+... ..+.+ ..+
T Consensus 32 ~DlVilavPv~--~~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv-~~~ 97 (197)
T PRK06444 32 ADHAFLSVPID--AALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIF-IND 97 (197)
T ss_pred CCEEEEeCCHH--HHHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceEEE-ECC
Confidence 89999999954 4456666553 25767777654 23332 3479999998753321 23333 356
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEeC
Q 009395 302 QTSPQVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 302 ~ts~e~~~~~~~l~~~lGk~~i~v~ 326 (535)
.++++.++.+.++++ |..++.+.
T Consensus 98 ~~~~~~~~~~~~l~~--G~~~~~~t 120 (197)
T PRK06444 98 ISRDNYLNEINEMFR--GYHFVEMT 120 (197)
T ss_pred CCCHHHHHHHHHHHc--CCEEEEeC
Confidence 778888899999988 77777665
No 185
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.78 E-value=2.2e-08 Score=100.78 Aligned_cols=123 Identities=20% Similarity=0.286 Sum_probs=78.1
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
+||+|||+|.||.++|..++.+|+ +|+++|++++.. .+.. ...++ .+ .......+++.+++++++++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~-~g~a--~d~~~----~~-----~~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIP-QGKA--LDMYE----AS-----PVGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChh-HHHH--Hhhhh----hh-----hccCCCcEEEecCCHHHhCC
Confidence 489999999999999999999887 899999976643 2221 01111 11 01111246777788888999
Q ss_pred CCEEEEecc--------------CChHHHHHHHHHHHhhcCCCceee--ecCCcCcHHHHHhhcCC-CCcEEee
Q 009395 227 VDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILA--SNTSTIDLNLIGERTYS-KDRIVGA 283 (535)
Q Consensus 227 aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~--s~tS~~~~~~l~~~~~~-~~r~ig~ 283 (535)
||+||.++. .+..+.+++.+++.++.+ +++++ ||-..+-...+.+..+. +.|++|+
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~ 142 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQ 142 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcHHHHHHHHHHHHCcCHHHEEEe
Confidence 999999986 244566777777888764 44333 44332222223333233 3567775
No 186
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.78 E-value=2.3e-07 Score=90.61 Aligned_cols=166 Identities=17% Similarity=0.133 Sum_probs=115.8
Q ss_pred CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCCCEEEEeccCChHHHHHHHHHHH
Q 009395 171 YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLE 249 (535)
Q Consensus 171 ~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVI~avpe~~~~k~~v~~~l~ 249 (535)
++|++++|++++++...+. .| +....+. +.+.+||+||.||+ +....++++++.
T Consensus 10 ~~I~v~~R~~e~~~~l~~~----------~g-------------~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~ 64 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKE----------LG-------------IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELK 64 (245)
T ss_pred CeEEEEcCCHHHHHHHHHH----------cC-------------cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHh
Confidence 5899999999886544211 01 1122333 44678999999998 556788899988
Q ss_pred hhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCE-EEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCc
Q 009395 250 KYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL-LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328 (535)
Q Consensus 250 ~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~l-veiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~ 328 (535)
+.+.++.+|+|.+++++++++.+.++...+++.++|+.|...... .-+.+++.++++..+.+..+|..+|+...+ .+.
T Consensus 65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v-~E~ 143 (245)
T TIGR00112 65 SEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVEL-PEA 143 (245)
T ss_pred hhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE-CHH
Confidence 877778899999999999999998865568999999988876544 445578888999999999999999976544 331
Q ss_pred --ccch-hhhh---HHHHHHHHH--HHHHcCCCHHHHHHHHH
Q 009395 329 --TGFA-VNRM---FFPYTQAAF--LLVERGTDLYLIDRAIT 362 (535)
Q Consensus 329 --~G~i-~nri---~~~~~~ea~--~l~~~G~~~~~ID~a~~ 362 (535)
..+. +.-. +..++.+++ ..+..|+++++-.+++.
T Consensus 144 ~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~ 185 (245)
T TIGR00112 144 LMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAA 185 (245)
T ss_pred HcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1111 1111 112223332 23457889988888765
No 187
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.75 E-value=2.1e-07 Score=94.06 Aligned_cols=163 Identities=18% Similarity=0.138 Sum_probs=98.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (535)
+||+|||+|.||+.+|..|+++|++|++++++++.++...+ .|. .-.+ ......+..+++.+.+.++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~g~-~~~~-~~~~~~~~~~~~~~~~~~~ 67 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE-----------NGL-RLED-GEITVPVLAADDPAELGPQ 67 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH-----------cCC-cccC-CceeecccCCCChhHcCCC
Confidence 47999999999999999999999999999998877655432 121 0000 0000112223444445899
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc-HHHHHhhcCCCCcEEe-ecc-----cCCCC---CC-CEEE
Q 009395 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIVG-AHF-----FSPAH---VM-PLLE 296 (535)
Q Consensus 228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~~l~~~~~~~~r~ig-~h~-----~~P~~---~~-~lve 296 (535)
|+||.|++.. ....+++.+.+.+.++++|++...++. .+.+...++. .++++ ..+ ..|.. .. ..+.
T Consensus 68 d~vila~k~~--~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~~-~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ 144 (304)
T PRK06522 68 DLVILAVKAY--QLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGP-ERVLGGVVTHAAELEGPGVVRHTGGGRLK 144 (304)
T ss_pred CEEEEecccc--cHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcCc-ccEEEEEEEEeeEecCCCEEEEcCCCCEE
Confidence 9999999854 347788999998888887777777775 4455555532 23332 211 12321 11 1122
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (535)
Q Consensus 297 iv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d 327 (535)
+...+. +.+..+.+.+++...|.......|
T Consensus 145 ig~~~~-~~~~~~~l~~~l~~~~~~~~~~~d 174 (304)
T PRK06522 145 IGEPDG-ESAAAEALADLLNAAGLDVEWSPD 174 (304)
T ss_pred EeCCCC-CcHHHHHHHHHHHhcCCCCCCChH
Confidence 222222 224456677777777765444444
No 188
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.72 E-value=2.1e-08 Score=101.12 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCC---CCcchhhhhcCcch-HHHHHHHHHhHh
Q 009395 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFP---PYRFVTFIHRGFSK-SSSCFKNLLCYF 526 (535)
Q Consensus 459 ~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~---~~~~g~~~~~G~~~-~~~~~~~~~~~~ 526 (535)
..||.|||+.+++|||++++++|++ |++|||.+|.+|+|+| +|||.++|++|+|. +.+.++++...+
T Consensus 187 pGFi~NRl~~a~~~EA~~lv~eGva-s~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~g~~~ 257 (321)
T PRK07066 187 PGFIADRLLEALWREALHLVNEGVA-TTGEIDDAIRFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQFGPAL 257 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHhhhcChHHHHHHHHHHhhhhh
Confidence 4599999999999999999999999 9999999999999998 89999999999997 555556654443
No 189
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.72 E-value=1.7e-07 Score=94.69 Aligned_cols=165 Identities=16% Similarity=0.143 Sum_probs=98.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCccc-cc
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYES-FK 225 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~-~~ 225 (535)
+||+|||+|.||..+|..|+++|++|+++++ ++.++...+ .|. +.....+.. -.....++.+. ..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~-----------~g~~~~~~~~~~~-~~~~~~~~~~~~~~ 67 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRE-----------RGLVIRSDHGDAV-VPGPVITDPEELTG 67 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHh-----------CCeEEEeCCCeEE-ecceeecCHHHccC
Confidence 4799999999999999999999999999999 766654321 111 000000000 00112334443 48
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc-HHHHHhhcCCCCcEE-eeccc-----CCCCC----CCE
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIV-GAHFF-----SPAHV----MPL 294 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~~l~~~~~~~~r~i-g~h~~-----~P~~~----~~l 294 (535)
++|+||.|++.. ...++++++.+.++++++|++..-++. .+.+...++. .+++ |..++ .|-.. ...
T Consensus 68 ~~d~vilavk~~--~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~ 144 (305)
T PRK12921 68 PFDLVILAVKAY--QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHR 144 (305)
T ss_pred CCCEEEEEeccc--CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCc
Confidence 899999999854 346778888888888887776666665 3455555532 2444 23332 22111 111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCc
Q 009395 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328 (535)
Q Consensus 295 veiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~ 328 (535)
+.+-..+....+..+.+.+.+...|.......|.
T Consensus 145 ~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di 178 (305)
T PRK12921 145 LTFGEIPGQRSERTRAVRDALAGARLEVVLSENI 178 (305)
T ss_pred EEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHH
Confidence 2222222233456667777888877665555554
No 190
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.68 E-value=4.8e-08 Score=96.63 Aligned_cols=96 Identities=26% Similarity=0.425 Sum_probs=73.9
Q ss_pred EEEEeC-ChhhHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-ccc
Q 009395 150 VAILGG-GLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YES 223 (535)
Q Consensus 150 V~vIG~-G~mG~~iA~~l~~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~ 223 (535)
|+|||+ |.||.++|..++..| .+|+++|+++++++.....+++..... ...+++.++| +++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 699999999988776555444332111 1135666677 578
Q ss_pred ccCCCEEEE--------------eccCChHHHHHHHHHHHhhcCCCceee
Q 009395 224 FKDVDMVIE--------------AIIENVSLKQQIFADLEKYCPPHCILA 259 (535)
Q Consensus 224 ~~~aDlVI~--------------avpe~~~~k~~v~~~l~~~~~~~~ii~ 259 (535)
+++||+||+ .+.++..+++++.+++.++++ +++++
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~~i 116 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSP-DAWII 116 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence 999999999 556778899999999999984 55443
No 191
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.68 E-value=2e-08 Score=91.48 Aligned_cols=98 Identities=22% Similarity=0.301 Sum_probs=85.5
Q ss_pred CccCCCCCChhHHHhCCCcceecCCC----chHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHh
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPN----QLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQ 76 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~----~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (535)
+|+|||.+++.||+..||||+||.+. .....|+++|+++..+. |
T Consensus 188 LIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~g-P------------------------------- 235 (291)
T KOG1679|consen 188 LIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQG-P------------------------------- 235 (291)
T ss_pred HhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCC-c-------------------------------
Confidence 58999999999999999999999875 45566777777776642 3
Q ss_pred CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395 77 APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (535)
Q Consensus 77 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~ 134 (535)
.|+..+|-+|+.+.+.++..++.+|..-+++...+.|.-+++.+|.+||++...
T Consensus 236 ----iavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y~ 289 (291)
T KOG1679|consen 236 ----IAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEYK 289 (291)
T ss_pred ----hhhhHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcC
Confidence 377889999999999999999999999999999999999999999999988653
No 192
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=2.7e-06 Score=85.17 Aligned_cols=193 Identities=15% Similarity=0.168 Sum_probs=128.3
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc----
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES---- 223 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---- 223 (535)
..|+|||+|+||+.+|..++++|+.|.+|+|+.++.+...+. .+. ..+|.+..++++
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~----------~~~---------~k~i~~~~sieefV~~ 64 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE----------RAK---------GKNIVPAYSIEEFVAS 64 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh----------Ccc---------CCCccccCcHHHHHHH
Confidence 469999999999999999999999999999999998876532 110 013444444443
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHh---hcCCCCcEEeecccCC---CCCCCEEEE
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGE---RTYSKDRIVGAHFFSP---AHVMPLLEI 297 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~---~~~~~~r~ig~h~~~P---~~~~~lvei 297 (535)
++.---|+..|-.. .....++++|.+++.++.|+++-.-+.-.+.+.. .....-.|+|+---.. +..+| .+
T Consensus 65 Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GP--Si 141 (473)
T COG0362 65 LEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGP--SI 141 (473)
T ss_pred hcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCC--Cc
Confidence 45566777777543 2346788999999999999987665554443322 2233446777643211 11111 25
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCc----e--EEeC-Ccccchh----hhhHH---HHHHHHHHHHHcC--CCHHHHHHHH
Q 009395 298 VRTNQTSPQVIVDLLDIGKKIKKT----P--IVVG-NCTGFAV----NRMFF---PYTQAAFLLVERG--TDLYLIDRAI 361 (535)
Q Consensus 298 v~~~~ts~e~~~~~~~l~~~lGk~----~--i~v~-d~~G~i~----nri~~---~~~~ea~~l~~~G--~~~~~ID~a~ 361 (535)
+|| .+++..+.+.+++..+... | .+++ +..|.++ |-|=+ .++.|+..++.++ .|.++|-.++
T Consensus 142 MpG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF 219 (473)
T COG0362 142 MPG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVF 219 (473)
T ss_pred CCC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 566 3789999999999876522 2 2344 4556543 55544 3589999999875 5999999887
Q ss_pred Hhc
Q 009395 362 TKF 364 (535)
Q Consensus 362 ~g~ 364 (535)
..+
T Consensus 220 ~~W 222 (473)
T COG0362 220 EEW 222 (473)
T ss_pred HHh
Confidence 643
No 193
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=98.59 E-value=5.7e-08 Score=87.77 Aligned_cols=96 Identities=21% Similarity=0.255 Sum_probs=77.2
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||.||+++||+.-|||.++||+++|..++.+++.+|-..++.
T Consensus 188 ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~sra----------------------------------- 232 (287)
T KOG1682|consen 188 MLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRA----------------------------------- 232 (287)
T ss_pred HHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHH-----------------------------------
Confidence 789999999999999999999999999999999999988775311
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~ 132 (535)
....-|+-.+....++..+++..-.+....-+.-.|++++|.+|++||++.
T Consensus 233 -v~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~ 283 (287)
T KOG1682|consen 233 -VISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPN 283 (287)
T ss_pred -HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCC
Confidence 112344555555556666777777777778888899999999999999875
No 194
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.58 E-value=4e-07 Score=80.97 Aligned_cols=101 Identities=28% Similarity=0.373 Sum_probs=68.3
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (535)
+||+|||+ |.+|..+|..+...++ +++++|++++.++....++++...... ........+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~-------------~~~~i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLP-------------SPVRITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGST-------------EEEEEEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcc-------------ccccccccccccc
Confidence 58999999 9999999999999986 899999998876654444433221110 0111223677899
Q ss_pred cCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceeeecC
Q 009395 225 KDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNT 262 (535)
Q Consensus 225 ~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (535)
++||+||.+. |. +..+.+++..++.++.+ +.+++..|
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p-~~~vivvt 118 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAP-DAIVIVVT 118 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHST-TSEEEE-S
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCC-ccEEEEeC
Confidence 9999999876 21 33456666677888874 44444333
No 195
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.54 E-value=2.8e-07 Score=93.85 Aligned_cols=100 Identities=16% Similarity=0.042 Sum_probs=76.9
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (535)
++|+|||+|.||.++|..+...|++|++||++++..... +....++ +.+++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~ 198 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence 589999999999999999999999999999987542110 0112234 45789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhcC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY 275 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~ 275 (535)
||+|+.++|...+....+.+++.+.+++++++++.+-+. .-..+.+.+.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 999999999988877777788888999999887655553 3446666663
No 196
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.53 E-value=5.9e-07 Score=85.11 Aligned_cols=150 Identities=13% Similarity=0.150 Sum_probs=114.1
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (535)
++|++||+|.|..+|+..+.++|+ +++.+-.+...... .+...| .-...++.+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~----------~~~~~g------------~~~~~~n~~~ 58 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGL----------MFEALG------------VKTVFTNLEV 58 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhh----------hhhcCC------------ceeeechHHH
Confidence 379999999999999999999996 34444332221111 001112 1123445667
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEE-EEeCCC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTNQ 302 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~~~~ 302 (535)
++.+|+++.++ ++.+...++.++...+..+.|++|...+.+++.+...++.+.|++..+|+.|..+..... +..+..
T Consensus 59 ~~~s~v~~~sv--Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~ 136 (267)
T KOG3124|consen 59 LQASDVVFLSV--KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH 136 (267)
T ss_pred HhhccceeEee--cchhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence 88999999999 466777888888776777889999999999999999998778999999999988766665 557888
Q ss_pred CCHHHHHHHHHHHHhcCCc
Q 009395 303 TSPQVIVDLLDIGKKIKKT 321 (535)
Q Consensus 303 ts~e~~~~~~~l~~~lGk~ 321 (535)
...+..+.+.+++..+|+.
T Consensus 137 ~~~~D~~l~~~ll~~vG~~ 155 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLC 155 (267)
T ss_pred cchhhHHHHHHHHHhcCcc
Confidence 8889999999999999964
No 197
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.52 E-value=8.3e-06 Score=76.96 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=100.7
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccCCh
Q 009395 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENV 238 (535)
Q Consensus 159 G~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe~~ 238 (535)
|+.+|..++.+||+|++.|.|.+-.+... +++.-..|. -..++|.++++++.+.|.-.|-..
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~------w~~vedAGV------------~vv~dD~eaa~~~Ei~VLFTPFGk 94 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEH------WKRVEDAGV------------EVVSDDAEAAEHGEIHVLFTPFGK 94 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHH------HHHHHhcCc------------EEecCchhhhhcceEEEEecccch
Confidence 78899999999999999999877654321 111112221 112456688999999999998542
Q ss_pred HHHHHHHHHHHhhcCCCceeeecCCcCcHH----HHHhhcCCCCcEEeecccCCCCC----CCEEEEEeCCC------CC
Q 009395 239 SLKQQIFADLEKYCPPHCILASNTSTIDLN----LIGERTYSKDRIVGAHFFSPAHV----MPLLEIVRTNQ------TS 304 (535)
Q Consensus 239 ~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~----~l~~~~~~~~r~ig~h~~~P~~~----~~lveiv~~~~------ts 304 (535)
..-.+.++|.++++.+++|+ ||.+.++- .+...+..+.+-+|+..|.|+.. ..-.-++.+.. .+
T Consensus 95 -~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elAT 172 (340)
T COG4007 95 -ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELAT 172 (340)
T ss_pred -hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeecc
Confidence 23467788999999999886 55555543 34445555666778777766532 11122333322 36
Q ss_pred HHHHHHHHHHHHhcCCceEEeC
Q 009395 305 PQVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~i~v~ 326 (535)
+|++++..++.++.||.++++.
T Consensus 173 eEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 173 EEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred HHHHHHHHHHHHhcCCceEecC
Confidence 8999999999999999999876
No 198
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.51 E-value=1.5e-07 Score=94.13 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=70.0
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 180 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 223 (288)
T PRK08290 180 LLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMP-P----------------------------------- 223 (288)
T ss_pred HHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999863 2
Q ss_pred CcHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHh-cCHH
Q 009395 81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQKLL-RSET 117 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~-~~~~~l~~E~~~f~~~~-~s~e 117 (535)
.+...+|++++..... ++++++..|...+...+ +++|
T Consensus 224 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 224 FGLRLTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence 2566788999887765 68999999998888877 7776
No 199
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.42 E-value=7.3e-07 Score=90.14 Aligned_cols=98 Identities=23% Similarity=0.297 Sum_probs=67.6
Q ss_pred ceEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
+||+|||+|.+|+++|..++..| .+|+++|++++.++....++++..... +. ...+. +.++++++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~---~~---------~~~i~-~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFL---PS---------PVKIK-AGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhcc---CC---------CeEEE-cCCHHHhC
Confidence 48999999999999999999999 589999999988765544443221000 00 00122 34667789
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHhhcCCCceee
Q 009395 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (535)
Q Consensus 226 ~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (535)
+||+||.+... +..+.+++...+.++.+ +++++
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vi 114 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFL 114 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 99999999842 34456677777888776 44443
No 200
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.42 E-value=2e-07 Score=90.24 Aligned_cols=73 Identities=25% Similarity=0.326 Sum_probs=62.5
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+++|++++|+||+++||||+|||++++.+.+.+++++++..+ |
T Consensus 156 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 199 (229)
T PRK06213 156 AVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLN-M----------------------------------- 199 (229)
T ss_pred HHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDF 109 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f 109 (535)
.+...+|+.++.....+++++++.|...|
T Consensus 200 ~a~~~~K~~l~~~~~~~l~~~~~~~~~~~ 228 (229)
T PRK06213 200 GAHAATKLKVRAAALEAIRAAIEGDAAEF 228 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence 25667888888877777888888887765
No 201
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=98.41 E-value=6.3e-07 Score=84.53 Aligned_cols=104 Identities=26% Similarity=0.336 Sum_probs=70.3
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (535)
.||+|||+|.||+.+|..|++.|+ +++++|.+ ++.+.+-. + .....|.-..+.+...+.++.+..+++
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~------~-~~~~iG~~Ka~~~~~~l~~inp~~~i~~ 94 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ------Y-KASQVGEPKTEALKENISEINPYTEIEA 94 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc------C-ChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 579999999999999999999999 69999998 55543311 0 000112211122233333333322221
Q ss_pred ------------cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceee
Q 009395 223 ------------SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (535)
Q Consensus 223 ------------~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~ 259 (535)
.++++|+||+| .+++..|..++.++....+...+++
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 36789999999 6899999999999988877766665
No 202
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.41 E-value=4.1e-07 Score=92.00 Aligned_cols=70 Identities=27% Similarity=0.219 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhh---hhcCcchHHHHHHHHHhHhcCCC
Q 009395 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTF---IHRGFSKSSSCFKNLLCYFDQGR 530 (535)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~---~~~G~~~~~~~~~~~~~~~~~~~ 530 (535)
.+++||++.++++|++.++++|++ ++++||.++..|+|||++++||+ |++|+|+..++++.+++.+++++
T Consensus 183 Gfi~nri~~~~l~EAl~l~e~g~~-~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~ 255 (314)
T PRK08269 183 GYIVPRIQALAMNEAARMVEEGVA-SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYYASRYLAGEIGPDR 255 (314)
T ss_pred CcchHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHHHHHHHHHHhCCCC
Confidence 479999999999999999999998 99999999999999997555555 78999999999999998877644
No 203
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.41 E-value=9e-07 Score=88.14 Aligned_cols=90 Identities=16% Similarity=0.060 Sum_probs=71.5
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||++||++++.+++.+++++++.. |.
T Consensus 185 llltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~--~~---------------------------------- 228 (287)
T PRK08788 185 LILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK--LN---------------------------------- 228 (287)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC--cc----------------------------------
Confidence 578999999999999999999999999999999999999974 21
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHH-HHHHHHHHhh
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET-CKSLVHIFFA 127 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e-~~~~i~aF~~ 127 (535)
++..+|+..+.....++++.++.|...+..++++.+ .++-+..|..
T Consensus 229 -~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 229 -GWRAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred -HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 344556666666666788899999888887666554 4666777754
No 204
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.40 E-value=1.3e-06 Score=88.11 Aligned_cols=96 Identities=22% Similarity=0.307 Sum_probs=66.7
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
.||+|||+|.+|+++|..++..|. +++++|++++.++....++.+.. ... ....+..++++++++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~------~~~-------~~~~v~~~~dy~~~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS------AFL-------KNPKIEADKDYSVTA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh------ccC-------CCCEEEECCCHHHhC
Confidence 599999999999999999998886 79999999876654433332221 000 012455567888999
Q ss_pred CCCEEEEecc--C------------ChHHHHHHHHHHHhhcCCCc
Q 009395 226 DVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHC 256 (535)
Q Consensus 226 ~aDlVI~avp--e------------~~~~k~~v~~~l~~~~~~~~ 256 (535)
+||+||.+.- . +..+.+++.+++.++.++..
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~ 115 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAI 115 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 9999998651 1 23345666677888865444
No 205
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.35 E-value=5.9e-07 Score=93.16 Aligned_cols=88 Identities=14% Similarity=0.271 Sum_probs=71.6
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|+|||++++|+||+++||||++||++++ +.+.+++.+++..+ |
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~-p----------------------------------- 238 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDD-P----------------------------------- 238 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999997 67778888887742 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF 126 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~ 126 (535)
.+...+|+.+... ..+.+.++..|.+.+..++.+++.++.+.+|.
T Consensus 239 ~av~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~ 283 (401)
T PLN02157 239 SVVESCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLE 283 (401)
T ss_pred HHHHHHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 1455677776654 23456778888999999999999999999993
No 206
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.35 E-value=5.5e-06 Score=83.73 Aligned_cols=174 Identities=14% Similarity=0.060 Sum_probs=101.2
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
+||+|||+|.||+-+|..|+++|++|++++++.+.++..++. .|. +.... ....-.+.. .+.+....
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~----------~Gl~i~~~g-~~~~~~~~~-~~~~~~~~ 70 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA----------GGLTLVEQG-QASLYAIPA-ETADAAEP 70 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc----------CCeEEeeCC-cceeeccCC-CCcccccc
Confidence 579999999999999999999999999999988776654320 111 00000 000000111 11233567
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH-HHHHhhcCCCCcEE-eeccc-----CCCCC---CCEEE
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIV-GAHFF-----SPAHV---MPLLE 296 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~i-g~h~~-----~P~~~---~~lve 296 (535)
+|+||.|+-.. -..+.++.+.+.+.+++++++.--++.. +.++..++.. +++ |..++ .|-.. .....
T Consensus 71 ~D~viv~vK~~--~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~-~v~~g~~~~ga~~~~pg~v~~~~~g~~ 147 (305)
T PRK05708 71 IHRLLLACKAY--DAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHA-RCIFASSTEGAFRDGDWRVVFAGHGFT 147 (305)
T ss_pred cCEEEEECCHH--hHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCC-cEEEEEeeeceecCCCCEEEEeceEEE
Confidence 89999999532 2357788899999999988777777765 4566665432 333 33222 33211 11111
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHH
Q 009395 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFF 338 (535)
Q Consensus 297 iv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~ 338 (535)
.+ |.. +.+..+.+.+++...|.......|..+.++..++.
T Consensus 148 ~~-G~~-~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~ 187 (305)
T PRK05708 148 WL-GDP-RNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLAL 187 (305)
T ss_pred EE-cCC-CCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Confidence 12 221 22345666677777675555555555554444443
No 207
>PLN02602 lactate dehydrogenase
Probab=98.32 E-value=1.9e-06 Score=88.09 Aligned_cols=96 Identities=24% Similarity=0.373 Sum_probs=66.3
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
+||+|||+|.+|+++|..++..|. +++++|++++.++....++.+... ... . ..+..++++++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~------~~~------~-~~i~~~~dy~~~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA------FLP------R-TKILASTDYAVTA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh------cCC------C-CEEEeCCCHHHhC
Confidence 599999999999999999998886 799999998776544433332210 000 0 1344445788899
Q ss_pred CCCEEEEec--c------------CChHHHHHHHHHHHhhcCCCc
Q 009395 226 DVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHC 256 (535)
Q Consensus 226 ~aDlVI~av--p------------e~~~~k~~v~~~l~~~~~~~~ 256 (535)
+||+||.+. | .+..+.+++...+.++.++..
T Consensus 105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~i 149 (350)
T PLN02602 105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTI 149 (350)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 999999985 1 123455666677777765544
No 208
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.31 E-value=9.1e-07 Score=89.23 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=40.1
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhcc
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~ 42 (535)
|+|||++++|+||+++||||++||++++.+++.++|++++..
T Consensus 188 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~ 229 (302)
T PRK08272 188 LLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAV 229 (302)
T ss_pred HHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999999999999985
No 209
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.31 E-value=2.3e-06 Score=85.12 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=87.3
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
=++|+|||.|.||.++|..|...|++|+++++.....+.+. ..| ....+-.+.++.
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G-------------~~v~sl~Eaak~ 71 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADG-------------FEVMSVSEAVRT 71 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcC-------------CEECCHHHHHhc
Confidence 36899999999999999999999999999987643322211 112 111222255789
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHhhcCCCceeeecCCcCcHHHHHhhcCCC--CcEEeecccCCCCC----------CC
Q 009395 227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDLNLIGERTYSK--DRIVGAHFFSPAHV----------MP 293 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~--~r~ig~h~~~P~~~----------~~ 293 (535)
||+|+.++|. .+. +.++ +++.+.++++++++ -+-+..+.. . .+..| ..++=+-|=.|-+. .|
T Consensus 72 ADVV~llLPd-~~t-~~V~~~eil~~MK~GaiL~-f~hgfni~~-~-~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp 146 (335)
T PRK13403 72 AQVVQMLLPD-EQQ-AHVYKAEVEENLREGQMLL-FSHGFNIHF-G-QINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVP 146 (335)
T ss_pred CCEEEEeCCC-hHH-HHHHHHHHHhcCCCCCEEE-ECCCcceec-C-ceeCCCCCeEEEECCCCCChHHHHHHHcCCCce
Confidence 9999999996 444 4555 57899999998765 344444421 1 11112 12322223223221 12
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCc
Q 009395 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKT 321 (535)
Q Consensus 294 lveiv~~~~ts~e~~~~~~~l~~~lGk~ 321 (535)
.+.-+.. ..+....+.+..+...+|..
T Consensus 147 ~l~av~q-d~sg~a~~~ala~a~~iG~~ 173 (335)
T PRK13403 147 ALVAVHQ-DATGTALHVALAYAKGVGCT 173 (335)
T ss_pred eEEEEEE-CCCCcHHHHHHHHHHHcCCC
Confidence 2222222 23445677888888888865
No 210
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.30 E-value=1.6e-06 Score=78.33 Aligned_cols=120 Identities=14% Similarity=0.070 Sum_probs=71.9
Q ss_pred cceEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
-++|+|+|+|.||.+++..++..| .+|+++|++++..+...+.+.. .+ + .....+..+.++
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~~~~~~~~~~~~ 80 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------AIAYLDLEELLA 80 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------ceeecchhhccc
Confidence 358999999999999999999996 7899999998877654322110 00 0 011111123378
Q ss_pred CCCEEEEeccCChH-HHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhc-CCCCcEEeeccc
Q 009395 226 DVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT-YSKDRIVGAHFF 286 (535)
Q Consensus 226 ~aDlVI~avpe~~~-~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~-~~~~r~ig~h~~ 286 (535)
++|+||.|+|.... .....+. ...+++++++++.++....+.+.+.+ ....+++..|++
T Consensus 81 ~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~~~ 141 (155)
T cd01065 81 EADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGLEM 141 (155)
T ss_pred cCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCHHH
Confidence 99999999987653 1111111 12356778776555443323444433 223456665554
No 211
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.29 E-value=1.4e-06 Score=88.46 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCC---CCcchhhhhcCcchHHHHHHHHHhHhcC
Q 009395 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFP---PYRFVTFIHRGFSKSSSCFKNLLCYFDQ 528 (535)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~---~~~~g~~~~~G~~~~~~~~~~~~~~~~~ 528 (535)
.+++||++.++++|+..++++|++ ++++||.++..|+||| +||+..+|++|+|+..+++..+++.+++
T Consensus 184 G~i~nr~~~~~~~Ea~~l~~~g~~-~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~ 254 (311)
T PRK06130 184 GFIANRIQHALAREAISLLEKGVA-SAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAVASYLYQDLEN 254 (311)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCccCCCHHHHhhhhccchHHHHHHHHHHhcCC
Confidence 469999999999999999999998 9999999999999999 5788888899999999999999887754
No 212
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.27 E-value=3.7e-06 Score=85.05 Aligned_cols=97 Identities=28% Similarity=0.384 Sum_probs=66.6
Q ss_pred ceEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
+||+|||+|.+|.++|..++.+| .+|+++|++++.++.....+.... ..... ..+ .++++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~------~~~~~-------~~i-~~~d~~~l~ 66 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGT------PFVKP-------VRI-YAGDYADCK 66 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccc------cccCC-------eEE-eeCCHHHhC
Confidence 37999999999999999999999 589999999887653222221110 00000 122 245778899
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHhhcCCCcee
Q 009395 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCIL 258 (535)
Q Consensus 226 ~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii 258 (535)
+||+||.+++. +..+.+++.+++.++.+++.++
T Consensus 67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii 113 (308)
T cd05292 67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL 113 (308)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 99999999853 3345667777888877665443
No 213
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.24 E-value=9.2e-06 Score=72.46 Aligned_cols=93 Identities=19% Similarity=0.246 Sum_probs=62.1
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
++|+|||.|..|.+.|..|..+|++|++..+..+ ..+++. +.|. ...+-.|+++.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~~Gf-------------~v~~~~eAv~~ 60 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------ADGF-------------EVMSVAEAVKK 60 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------HTT--------------ECCEHHHHHHC
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------HCCC-------------eeccHHHHHhh
Confidence 6899999999999999999999999999998766 333332 3332 22233366899
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHhhcCCCceeeecCCcCcH
Q 009395 227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDL 267 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~ 267 (535)
||+|+..+|+. .-.+++ ++|.++++++..+.- +.+..+
T Consensus 61 aDvV~~L~PD~--~q~~vy~~~I~p~l~~G~~L~f-ahGfni 99 (165)
T PF07991_consen 61 ADVVMLLLPDE--VQPEVYEEEIAPNLKPGATLVF-AHGFNI 99 (165)
T ss_dssp -SEEEE-S-HH--HHHHHHHHHHHHHS-TT-EEEE-SSSHHH
T ss_pred CCEEEEeCChH--HHHHHHHHHHHhhCCCCCEEEe-CCcchh
Confidence 99999999954 446777 789999999997753 444443
No 214
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.24 E-value=1.6e-05 Score=80.09 Aligned_cols=166 Identities=17% Similarity=0.158 Sum_probs=99.7
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (535)
+||+|+|+|.||+-++..|+++|++|+++-|++. +++..+ .|..-..............++.+....+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~-----------~GL~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKK-----------KGLRIEDEGGNFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHh-----------CCeEEecCCCccccccccccChhhcCCC
Confidence 5899999999999999999999988888888775 554432 2221000000000111223344567799
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH-HHHhhcCCCCcEEeecccC-----CCCC---C-CEEEE
Q 009395 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVGAHFFS-----PAHV---M-PLLEI 297 (535)
Q Consensus 228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~r~ig~h~~~-----P~~~---~-~lvei 297 (535)
|+||.++-. -...++++.+.+.++++++|.+.--++... .+....+...-+.|+-+.. |.+. + .-+.+
T Consensus 69 Dlviv~vKa--~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i 146 (307)
T COG1893 69 DLVIVTVKA--YQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI 146 (307)
T ss_pred CEEEEEecc--ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence 999999943 345688999999999999777766676554 4555554332344443332 2111 1 12222
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (535)
Q Consensus 298 v~~~~ts~e~~~~~~~l~~~lGk~~i~v~d 327 (535)
-....-.++..+.+.+.++..|....+..|
T Consensus 147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 147 GELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 222222346677777777777765555444
No 215
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.23 E-value=4.3e-06 Score=84.64 Aligned_cols=95 Identities=20% Similarity=0.278 Sum_probs=66.1
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
+||+|||+|.+|+.+|..++..|+ ++.++|++++.++....++++..... . .-.+. ++++++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~------~-------~~~i~-~~~~~~~~ 72 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT------S-------PTKIY-AGDYSDCK 72 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc------C-------CeEEE-eCCHHHhC
Confidence 599999999999999999999998 89999999887765544443322000 0 01233 45778899
Q ss_pred CCCEEEEecc--C------------ChHHHHHHHHHHHhhcCCCc
Q 009395 226 DVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHC 256 (535)
Q Consensus 226 ~aDlVI~avp--e------------~~~~k~~v~~~l~~~~~~~~ 256 (535)
+||+||.+.- . +..+.+++..++.++.++..
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~ 117 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGI 117 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 9999998762 1 33455666667777665433
No 216
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.22 E-value=2.2e-06 Score=87.44 Aligned_cols=101 Identities=17% Similarity=0.131 Sum_probs=73.1
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (535)
++|+|||.|.||..+|..+...|++|..||++..... .. ..+ ... .++ +.+++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~-----------~~~-------------~~~-~~l~ell~~ 204 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EK-----------ELG-------------AEY-RPLEELLRE 204 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HH-----------HcC-------------CEe-cCHHHHHhh
Confidence 6899999999999999999999999999999764321 00 011 111 233 34789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhc
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERT 274 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~ 274 (535)
||+|+.++|...+.+.-+-++..+.++++++++..+.+- .-..+.+.+
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL 254 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKAL 254 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHH
Confidence 999999999888776666577888899999886444332 334566665
No 217
>PRK15076 alpha-galactosidase; Provisional
Probab=98.21 E-value=4.9e-06 Score=87.69 Aligned_cols=75 Identities=24% Similarity=0.309 Sum_probs=53.1
Q ss_pred ceEEEEeCChhhHHHHH--HHH----hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-
Q 009395 148 KKVAILGGGLMGSGIAT--ALI----LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD- 220 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~--~l~----~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~- 220 (535)
+||+|||+|.||...+. .++ ..|.+|+++|+++++++.+...+++.+... + ...+++.++|
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD~ 69 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTDR 69 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECCH
Confidence 68999999999966555 333 346699999999999876544444333221 1 1135677788
Q ss_pred cccccCCCEEEEec
Q 009395 221 YESFKDVDMVIEAI 234 (535)
Q Consensus 221 ~~~~~~aDlVI~av 234 (535)
.+++++||+||+++
T Consensus 70 ~eal~dADfVv~ti 83 (431)
T PRK15076 70 REALQGADYVINAI 83 (431)
T ss_pred HHHhCCCCEEeEee
Confidence 47899999999987
No 218
>PRK07574 formate dehydrogenase; Provisional
Probab=98.21 E-value=1.5e-05 Score=82.45 Aligned_cols=103 Identities=16% Similarity=0.094 Sum_probs=72.3
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (535)
++|+|||.|.||..+|+.+...|.+|+.||++....+... ..| +....++ +.++.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------ELG-------------LTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hcC-------------ceecCCHHHHhhc
Confidence 6899999999999999999999999999999753211100 011 1112234 34789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhc
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERT 274 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~ 274 (535)
||+|+.++|...+...-+=++....++++++++..+.+- .-..|.+.+
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL 298 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRAL 298 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHH
Confidence 999999999888765544467788899999887444333 334566665
No 219
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.20 E-value=4e-06 Score=84.44 Aligned_cols=96 Identities=24% Similarity=0.366 Sum_probs=67.5
Q ss_pred EEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395 150 VAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (535)
Q Consensus 150 V~vIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (535)
|+|||+|.+|+++|..++..| .+++++|++++.++....++.+..... ...++..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~-------------~~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL-------------ATGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc-------------CCCeEEECCCHHHhCCC
Confidence 689999999999999999999 489999999988765554443332110 00134434568899999
Q ss_pred CEEEEeccC--------------ChHHHHHHHHHHHhhcCCCceee
Q 009395 228 DMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (535)
Q Consensus 228 DlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (535)
|+||.++.. +..+.+++..++.++.+ +++++
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p-~~~vi 112 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGP-DAIIL 112 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 999998831 33456677777888874 44443
No 220
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=98.20 E-value=3.9e-06 Score=83.47 Aligned_cols=97 Identities=28% Similarity=0.389 Sum_probs=65.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
+||+|||+|.+|+++|..++..++ ++.++|++++..+.-..++.+.... .....++..+.++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~------------~~~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAP------------LGSDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchh------------ccCceEEecCCChhhhc
Confidence 489999999999999999988765 8999999966543322222111100 00011233334588999
Q ss_pred CCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCc
Q 009395 226 DVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHC 256 (535)
Q Consensus 226 ~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ 256 (535)
+||+|+.+. |- +..+.+++.+++.++.++..
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~i 113 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAI 113 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeE
Confidence 999999887 32 45577777778888877444
No 221
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.18 E-value=1.2e-05 Score=81.23 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=73.6
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (535)
++|+|||.|.||..+|+.+...|++|+.||++.+..... . ......++ +.+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~-----------------~---------~~~~~~~l~e~l~~ 190 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV-----------------Q---------SFAGREELSAFLSQ 190 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc-----------------e---------eecccccHHHHHhc
Confidence 689999999999999999999999999999875431100 0 00011233 44789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~ 275 (535)
||+|+.++|...+...-+-++....++++++++..+=+ +.-+.|.+.+.
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALD 241 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHh
Confidence 99999999998887766666788889999987643323 34456766663
No 222
>PLN03139 formate dehydrogenase; Provisional
Probab=98.17 E-value=2.3e-05 Score=81.02 Aligned_cols=103 Identities=14% Similarity=0.109 Sum_probs=73.1
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (535)
++|+|||.|.||..+|+.+...|.+|..||++....+... +.| +....+++ .+++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 255 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ETG-------------AKFEEDLDAMLPK 255 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hcC-------------ceecCCHHHHHhh
Confidence 6899999999999999999999999999998743211110 011 11223444 4689
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhc
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERT 274 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~ 274 (535)
||+|+.++|...+.+.-+=+++...++++++++..+-+- .-+.+.+.+
T Consensus 256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL 305 (386)
T PLN03139 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADAC 305 (386)
T ss_pred CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHH
Confidence 999999999888776655567888899999886443332 334566666
No 223
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.17 E-value=1.1e-05 Score=81.08 Aligned_cols=134 Identities=13% Similarity=0.086 Sum_probs=85.2
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (535)
++|+|||.|.||..+|+.+...|++|+.||++... .+. . ....++ +.+++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~-~-----------~~~~~l~ell~~ 173 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI-S-----------SIYMEPEDIMKK 173 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc-c-----------cccCCHHHHHhh
Confidence 78999999999999999888789999999987321 010 0 001233 34689
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcCC-CCcEEeeccc--CCC---CCCCEEEEE
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS-KDRIVGAHFF--SPA---HVMPLLEIV 298 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~h~~--~P~---~~~~lveiv 298 (535)
||+|+.++|...+...-+-++....++++++++..+.+ +.-..+.+.+.. .....++--| .|. +..+-+.+.
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nviiT 253 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVILS 253 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEEC
Confidence 99999999988876655556677788999988643333 334466666632 2333333222 332 234556666
Q ss_pred eC-C-CCCHHHHHH
Q 009395 299 RT-N-QTSPQVIVD 310 (535)
Q Consensus 299 ~~-~-~ts~e~~~~ 310 (535)
|+ . ..+++..+.
T Consensus 254 PHi~g~~t~e~~~~ 267 (303)
T PRK06436 254 PHVAGGMSGEIMQP 267 (303)
T ss_pred CccccccCHHHHHH
Confidence 76 2 245554433
No 224
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.16 E-value=5.5e-05 Score=74.31 Aligned_cols=153 Identities=16% Similarity=0.110 Sum_probs=105.5
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--c
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--F 224 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--~ 224 (535)
..+|+|||.|.||.=+|..+.++|+.|..+||++ -+.+.+.+ ..+. -+++.+ -
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y--------g~~~---------------ft~lhdlce 106 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY--------GSAK---------------FTLLHDLCE 106 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh--------cccc---------------cccHHHHHh
Confidence 4689999999999999999999999999999987 22222111 1111 122222 2
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhh-cCCCceeeecCCcCcH--HHHHhhcCCCCcEEeecccCCCC-C------CCE
Q 009395 225 KDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDL--NLIGERTYSKDRIVGAHFFSPAH-V------MPL 294 (535)
Q Consensus 225 ~~aDlVI~avpe~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~~--~~l~~~~~~~~r~ig~h~~~P~~-~------~~l 294 (535)
+..|+|+.|+. ..-..++++..-.. ++.++|++..+|.... +.+.+.++..-.++-.|++..+. . .|+
T Consensus 107 rhpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpf 184 (480)
T KOG2380|consen 107 RHPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPF 184 (480)
T ss_pred cCCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCce
Confidence 57899999994 33345566655444 6678999988886533 44556677777899999986443 2 255
Q ss_pred EEEE---eCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395 295 LEIV---RTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 295 veiv---~~~~ts~e~~~~~~~l~~~lGk~~i~v~ 326 (535)
|-+- ......+|..+.+.+++...|...+.+.
T Consensus 185 VydkvRig~~~~r~ercE~fleIf~cegckmVemS 219 (480)
T KOG2380|consen 185 VYDKVRIGYAASRPERCEFFLEIFACEGCKMVEMS 219 (480)
T ss_pred EEEEeeccccccchHHHHHHHHHHHhcCCeEEEEE
Confidence 5432 1233458999999999999998888764
No 225
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.14 E-value=7.8e-06 Score=82.31 Aligned_cols=98 Identities=17% Similarity=0.287 Sum_probs=63.3
Q ss_pred eEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 149 KVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
||+|||+|.+|+++|..++..|. +++++|++++.++....++.+..... +. ..-++. +.+++++++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~---~~--------~~~~i~-~~~y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALT---YS--------TNTKIR-AGDYDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccC---CC--------CCEEEE-ECCHHHhCC
Confidence 69999999999999999999987 79999999877654433332211000 00 001233 457899999
Q ss_pred CCEEEEecc--C----C----------hHHHHHHHHHHHhhcCCCceee
Q 009395 227 VDMVIEAII--E----N----------VSLKQQIFADLEKYCPPHCILA 259 (535)
Q Consensus 227 aDlVI~avp--e----~----------~~~k~~v~~~l~~~~~~~~ii~ 259 (535)
||+||.+.- . + ..+.+++..++.++.+ +.+++
T Consensus 69 aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p-~~i~i 116 (307)
T cd05290 69 ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTK-EAVII 116 (307)
T ss_pred CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 999998761 1 1 2344555556676764 44443
No 226
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.12 E-value=6.5e-06 Score=84.07 Aligned_cols=99 Identities=17% Similarity=0.128 Sum_probs=67.9
Q ss_pred ceEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009395 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 225 (535)
++|+|||+|.||.++|..++ ..|.+|+.||++...... . .+...++++ .++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--------------~-------------~~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA--------------T-------------YVDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--------------h-------------hccccCCHHHHHH
Confidence 58999999999999999984 468899999988643210 0 011223443 478
Q ss_pred CCCEEEEeccCChHHHHHHH-HHHHhhcCCCceeeecCCcCcH--HHHHhhc
Q 009395 226 DVDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDL--NLIGERT 274 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~ 274 (535)
+||+|+.++|....... ++ .++.+.++++++++..+.+..+ ..+.+.+
T Consensus 200 ~aDvIvl~lP~t~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL 250 (332)
T PRK08605 200 GADIVTLHMPATKYNHY-LFNADLFKHFKKGAVFVNCARGSLVDTKALLDAL 250 (332)
T ss_pred hCCEEEEeCCCCcchhh-hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHH
Confidence 99999999998766543 33 4566778999988654444333 3555555
No 227
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=98.11 E-value=5.2e-06 Score=76.77 Aligned_cols=95 Identities=19% Similarity=0.082 Sum_probs=81.4
Q ss_pred ccCCCCCChhHHHhCCCcceecCC-CchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 2 MLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 2 lltG~~i~A~eA~~~GLvd~vv~~-~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
.+|+|.++|.||++.|||.+|+|. +++++.++.+|+.|+.++ |.
T Consensus 192 afTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KS-pv---------------------------------- 236 (292)
T KOG1681|consen 192 AFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKS-PV---------------------------------- 236 (292)
T ss_pred HhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCC-ce----------------------------------
Confidence 479999999999999999999985 678999999999999864 43
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~ 132 (535)
|+..+|+.+..+.+++.+++|.+-...--..+.|+|....+.+-++|+++.
T Consensus 237 -aVqgTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~ 287 (292)
T KOG1681|consen 237 -AVQGTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTV 287 (292)
T ss_pred -eeechHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 677799999999999999999988777777778888888888877766544
No 228
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.11 E-value=1e-06 Score=87.51 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=68.3
Q ss_pred cchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCh---hHHHHHHHhchHHHHHHHHHHHHhCCCCCccCccH
Q 009395 330 GFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMII 403 (535)
Q Consensus 330 G~i~nri~~~~~~ea~~l~~~G~--~~~~ID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l 403 (535)
--++++++.+++||++++++||+ ++.++|-+.- |+|||. |||++.|..|.+.++..++.|.. +.|+.++
T Consensus 294 ed~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l 368 (380)
T KOG1683|consen 294 EDFVEFLLSPFVNEALRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLL 368 (380)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHH
Confidence 34899999999999999999997 9999999888 999984 99999999999999999998865 6788888
Q ss_pred HHHHHCC
Q 009395 404 PIMQEDK 410 (535)
Q Consensus 404 ~~~~~~G 410 (535)
.++..+|
T Consensus 369 ~~~a~~~ 375 (380)
T KOG1683|consen 369 KDHAKSG 375 (380)
T ss_pred HHHHhhh
Confidence 8887774
No 229
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.08 E-value=3e-05 Score=69.75 Aligned_cols=115 Identities=23% Similarity=0.246 Sum_probs=74.3
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccc---cCc-ccc
Q 009395 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGV---LDY-ESF 224 (535)
Q Consensus 150 V~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~---~~~-~~~ 224 (535)
|+|+|+|.||.-+|..|.++|++|+++++++ .++...+ .|. ++... .+ ..+... .+. +..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~-----------~g~~~~~~~-~~--~~~~~~~~~~~~~~~~ 65 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE-----------QGLTITGPD-GD--ETVQPPIVISAPSADA 65 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH-----------HCEEEEETT-EE--EEEEEEEEESSHGHHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh-----------eeEEEEecc-cc--eecccccccCcchhcc
Confidence 7899999999999999999999999999998 6554321 121 00000 00 001111 111 245
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH-HHHHhhcCCCCcEEe
Q 009395 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVG 282 (535)
Q Consensus 225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~ig 282 (535)
..+|+||.|+... -..++++.+.+++.+++.+++...++.. +.+.+..+.+ ++++
T Consensus 66 ~~~D~viv~vKa~--~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~~-~v~~ 121 (151)
T PF02558_consen 66 GPYDLVIVAVKAY--QLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPRP-RVLG 121 (151)
T ss_dssp STESEEEE-SSGG--GHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTGS-GEEE
T ss_pred CCCcEEEEEeccc--chHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCCC-cEEE
Confidence 7899999999643 3357888899999999777777777764 4555555443 4443
No 230
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=98.04 E-value=1.3e-05 Score=80.97 Aligned_cols=123 Identities=18% Similarity=0.200 Sum_probs=76.4
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (535)
+||+|+|+ |.+|..++..++..|+ +|+++|+++ +.++.....+. +.....+. ..+++.+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~~---------~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAGI---------DAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccCC---------CcEEEECCCHH
Confidence 58999998 9999999999999997 499999964 33332222221 11111110 01355566788
Q ss_pred cccCCCEEEEecc--CC-----h-------HHHHHHHHHHHhhcCCCceeeecCCcCcHHH--HHhhcCC-CCcEEee
Q 009395 223 SFKDVDMVIEAII--EN-----V-------SLKQQIFADLEKYCPPHCILASNTSTIDLNL--IGERTYS-KDRIVGA 283 (535)
Q Consensus 223 ~~~~aDlVI~avp--e~-----~-------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~--l~~~~~~-~~r~ig~ 283 (535)
++++||+||.|+. .. . .+.+++...+.+..+ +.+++..++..++-. +....+. +.+++|+
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence 8999999999983 11 1 445666667777765 555555666554432 2333333 3566765
No 231
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.02 E-value=3e-05 Score=76.47 Aligned_cols=181 Identities=18% Similarity=0.175 Sum_probs=104.9
Q ss_pred CCCcceEEEEeCChhhHHHHHHHHhC--CC-----cEEEEeCCHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHhhhccc
Q 009395 144 PRRVKKVAILGGGLMGSGIATALILS--NY-----PVILKEVNEKFLEAGIGRVRANLQSRVKK-GKMTQEKFEKTISLL 215 (535)
Q Consensus 144 ~~~~~kV~vIG~G~mG~~iA~~l~~~--G~-----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~-g~~~~~~~~~~~~~i 215 (535)
.+...||+|||.|+||++||+.+..+ ++ +|.+|-...+.-.. .+.+...+....+. ..+.. -+...++
T Consensus 18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~~heN~KYlpg---~~lP~Nv 93 (372)
T KOG2711|consen 18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINSRHENVKYLPG---IKLPENV 93 (372)
T ss_pred hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhccccccccccCC---ccCCCCe
Confidence 44467999999999999999988765 22 68888776544332 11222222211111 11111 1122456
Q ss_pred ccccCc-ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH----------H-HHHhhcCCCCcEEee
Q 009395 216 TGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL----------N-LIGERTYSKDRIVGA 283 (535)
Q Consensus 216 ~~~~~~-~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~----------~-~l~~~~~~~~r~ig~ 283 (535)
..++|+ +++.+||++|.++|. +....++++|..++++++..+|.+-++.. + .+...++-|-.++..
T Consensus 94 vAv~dl~ea~~dADilvf~vPh--Qf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~G 171 (372)
T KOG2711|consen 94 VAVPDLVEAAKDADILVFVVPH--QFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMG 171 (372)
T ss_pred EecchHHHHhccCCEEEEeCCh--hhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecC
Confidence 677777 567899999999994 57788999999999999988888766543 2 233344444333222
Q ss_pred cccCC-CCCCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc
Q 009395 284 HFFSP-AHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (535)
Q Consensus 284 h~~~P-~~~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G 330 (535)
-=+.+ +......|-+-+..-+.+.-..+.++|+.--..+.++.|..|
T Consensus 172 aNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~ 219 (372)
T KOG2711|consen 172 ANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADG 219 (372)
T ss_pred CchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchH
Confidence 10000 111223333323222333333577788776666666666554
No 232
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.02 E-value=5.5e-06 Score=79.67 Aligned_cols=42 Identities=33% Similarity=0.646 Sum_probs=40.0
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhcc
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~ 42 (535)
|+++|++++|+||+++||||+|+|++++++.+.+++++++..
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~ 204 (222)
T PRK05869 163 LVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDG 204 (222)
T ss_pred HHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999986
No 233
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.97 E-value=5.7e-05 Score=76.51 Aligned_cols=101 Identities=20% Similarity=0.177 Sum_probs=72.2
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 225 (535)
++|+|||+|.+|+.+|..+..-|.+|..||+ ++...... . ......+++ .++
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~-------------~-------------~~~~~~~Ld~lL~ 196 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV-------------D-------------GVVGVDSLDELLA 196 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc-------------c-------------cceecccHHHHHh
Confidence 6899999999999999999999999999999 43332110 0 111223454 378
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc---CcHHHHHhhcC
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (535)
.||+|+..+|..++.+.-+=++....++++++++ |++- +.-..|.+.+.
T Consensus 197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~ 248 (324)
T COG0111 197 EADILTLHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALD 248 (324)
T ss_pred hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHH
Confidence 9999999999888765444456677789999775 6653 34456666663
No 234
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.95 E-value=9.1e-06 Score=75.41 Aligned_cols=103 Identities=18% Similarity=0.155 Sum_probs=69.7
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (535)
++|+|||.|.+|..+|..+..-|.+|+.||++........ .. ... ..+++ .++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~~-------------~~~-~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------EF-------------GVE-YVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------HT-------------TEE-ESSHHHHHHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------cc-------------cce-eeehhhhcch
Confidence 6899999999999999999999999999999977543110 00 111 22444 4688
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~ 275 (535)
||+|+.++|-.++...-+=++....++++++++..+-+ +.-+.+.+.+.
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 99999999976654433335667788999988754444 34456666663
No 235
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.95 E-value=6.2e-05 Score=81.65 Aligned_cols=103 Identities=17% Similarity=0.086 Sum_probs=71.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (535)
++|+|||.|.||+.+|..+...|++|+.||+.... +... +.| +...++++ .+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLG-------------VELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEcCCHHHHHhh
Confidence 68999999999999999999999999999985221 1110 111 11222443 4689
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~ 275 (535)
||+|+.++|..++.+.-+=++....++++++++..+-+ +.-..|.+.+.
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 244 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALE 244 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHH
Confidence 99999999987776544435666788999988644433 34456666663
No 236
>PRK05442 malate dehydrogenase; Provisional
Probab=97.89 E-value=3.4e-05 Score=78.31 Aligned_cols=103 Identities=16% Similarity=0.098 Sum_probs=66.2
Q ss_pred cceEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 009395 147 VKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216 (535)
Q Consensus 147 ~~kV~vIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (535)
..||+|||+ |.+|+++|..++..|. +++++|+++. .++....++.+...... ..-.+.
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~------------~~~~i~ 71 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLL------------AGVVIT 71 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhc------------CCcEEe
Confidence 469999998 9999999999988775 7999999643 23322222221110000 001222
Q ss_pred cccCcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceeeecC
Q 009395 217 GVLDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNT 262 (535)
Q Consensus 217 ~~~~~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (535)
+.+++++++||+||.+. |. +..+.+++..+|.++.+++++++..|
T Consensus 72 -~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 72 -DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred -cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 45678999999999875 21 33456777778888886677665444
No 237
>PLN02928 oxidoreductase family protein
Probab=97.89 E-value=9.8e-05 Score=75.80 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=72.5
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (535)
++|+|||.|.||..+|..+...|.+|+.||++........ .+ +................++ +.+++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~------------~~-~~~~~~~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG------------LL-IPNGDVDDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh------------hc-cccccccccccccCcccCHHHHHhh
Confidence 6899999999999999999999999999999732211000 00 0000000000000011234 34789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~ 275 (535)
||+|+.++|-..+...-+=++....++++++|+..+-+ +.-+.|.+.+.
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALE 277 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 99999999988776544446677788999988744433 34456666663
No 238
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.87 E-value=9.5e-05 Score=80.25 Aligned_cols=129 Identities=19% Similarity=0.144 Sum_probs=82.4
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (535)
++|+|||.|.||..+|..+...|++|+.||++... +... ..| +... ++ +.+++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QLG-------------VELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEE-cHHHHHhh
Confidence 68999999999999999999999999999985321 1110 111 1112 34 34789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcCC-CCcEEeeccc--CCC-----CCCCEEE
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS-KDRIVGAHFF--SPA-----HVMPLLE 296 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~h~~--~P~-----~~~~lve 296 (535)
||+|+.++|..++.+.-+=++..+.++++++++..+-+ +.-..+.+.+.. .-.-.++--| .|. ...+-+.
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi 274 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVV 274 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCee
Confidence 99999999988776544436778889999988644433 344566666632 2223333333 232 2245556
Q ss_pred EEeCCC
Q 009395 297 IVRTNQ 302 (535)
Q Consensus 297 iv~~~~ 302 (535)
++|+-.
T Consensus 275 lTPHia 280 (526)
T PRK13581 275 VTPHLG 280 (526)
T ss_pred EcCccc
Confidence 666543
No 239
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.85 E-value=0.00013 Score=76.39 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=71.2
Q ss_pred cceEEEEeC-ChhhHHHHHHHHhC-------CC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 009395 147 VKKVAILGG-GLMGSGIATALILS-------NY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216 (535)
Q Consensus 147 ~~kV~vIG~-G~mG~~iA~~l~~~-------G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (535)
.-||+|||+ |.+|.++|..++.. |+ +++++|++++.++....++++..... +..+.
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~--------------~~~v~ 165 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPL--------------LREVS 165 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhh--------------cCceE
Confidence 468999999 99999999999988 76 89999999998765544443322111 11233
Q ss_pred -cccCcccccCCCEEEEec--c------------CChHHHHHHHHHHHhhcCCCceeeecC
Q 009395 217 -GVLDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (535)
Q Consensus 217 -~~~~~~~~~~aDlVI~av--p------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (535)
.+.+++++++||+||.+. | .+..+.+++...|.++..++++++..+
T Consensus 166 i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 166 IGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred EecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 246789999999999876 2 134456666677777556666655444
No 240
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.84 E-value=6e-05 Score=76.42 Aligned_cols=103 Identities=18% Similarity=0.137 Sum_probs=67.1
Q ss_pred cceEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 009395 147 VKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216 (535)
Q Consensus 147 ~~kV~vIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (535)
.-||+|||+ |.+|+++|..++..|+ +++++|+++ +.++....++.+..... .+ . -.++
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~-----~~-----~--~~i~ 70 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPL-----LA-----G--VVAT 70 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccc-----cC-----C--cEEe
Confidence 358999998 9999999999998885 799999965 32332222222111000 00 0 0122
Q ss_pred cccCcccccCCCEEEEec--c------------CChHHHHHHHHHHHhhcCCCceeeecC
Q 009395 217 GVLDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (535)
Q Consensus 217 ~~~~~~~~~~aDlVI~av--p------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (535)
+.+++++++||+||.+. | .+..+.+++..++.++.+++++++..|
T Consensus 71 -~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 71 -TDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred -cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 45678999999999876 1 134466777778888887677665444
No 241
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=97.83 E-value=3.4e-05 Score=73.18 Aligned_cols=93 Identities=13% Similarity=0.189 Sum_probs=80.7
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|||.|++++|+||...|||+++++++.+.+.++.-++++++-+ |
T Consensus 171 ~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~-p----------------------------------- 214 (266)
T KOG0016|consen 171 MLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLS-P----------------------------------- 214 (266)
T ss_pred HHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999988842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 009395 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQR 129 (535)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr 129 (535)
......|++++-.....+..+.+.|.......+.|+|+-+.+..|+.+.
T Consensus 215 ~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 215 ESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 2455677888877767788889999999999999999999999998754
No 242
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.82 E-value=5.7e-05 Score=75.45 Aligned_cols=91 Identities=24% Similarity=0.267 Sum_probs=62.7
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (535)
++|+|||.|.||.++|..|...|.+|++++++++..+.+. +.|.. .+. ..++ +.+.+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~~----------~~~-~~~l~~~l~~ 209 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGLI----------PFP-LNKLEEKVAE 209 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCCe----------eec-HHHHHHHhcc
Confidence 5899999999999999999999999999999987654321 11210 000 1122 34689
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 265 (535)
+|+||.++|... + -++..+.+++++++++.+|..
T Consensus 210 aDiVint~P~~i-i----~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 210 IDIVINTIPALV-L----TADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred CCEEEECCChHH-h----CHHHHhcCCCCeEEEEeCcCC
Confidence 999999998542 1 133445577888887666543
No 243
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.81 E-value=0.00025 Score=73.46 Aligned_cols=185 Identities=14% Similarity=0.117 Sum_probs=107.9
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEE------EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVIL------KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l------~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (535)
++|+|||.|.+|.+.|..+...|++|++ +|.+.+.-+.+. +.|. ...+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dGF-------------~v~~~~ 92 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENGF-------------KVGTYE 92 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcCC-------------ccCCHH
Confidence 7899999999999999999999999983 333333333221 2221 122223
Q ss_pred ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCC----------C
Q 009395 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH----------V 291 (535)
Q Consensus 222 ~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~----------~ 291 (535)
+.++.||+|+..+|+. . ...+.+++.+.++++.++.- +-+..+..-.-..+....++-+-|=.|-+ .
T Consensus 93 Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~f-sHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G 169 (487)
T PRK05225 93 ELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGY-SHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG 169 (487)
T ss_pred HHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEe-cCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence 5689999999999976 3 67778999999999997753 33444432211112223344444433322 1
Q ss_pred CC-EEEEEeCCCCCHHHHHHHHHHHHhcCCc---eEEeC---Cc-ccchhhhh-HHHH-----HHHHHHHHHcCCCHHHH
Q 009395 292 MP-LLEIVRTNQTSPQVIVDLLDIGKKIKKT---PIVVG---NC-TGFAVNRM-FFPY-----TQAAFLLVERGTDLYLI 357 (535)
Q Consensus 292 ~~-lveiv~~~~ts~e~~~~~~~l~~~lGk~---~i~v~---d~-~G~i~nri-~~~~-----~~ea~~l~~~G~~~~~I 357 (535)
.| ++.+-+-...+....+.+..+...+|.. ++... +. ...+..+. +... ...--.|+++|++|+.-
T Consensus 170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A 249 (487)
T PRK05225 170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA 249 (487)
T ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 12 3333322345666788899999999966 22222 10 11222222 1111 22224567889988876
Q ss_pred HH
Q 009395 358 DR 359 (535)
Q Consensus 358 D~ 359 (535)
-.
T Consensus 250 ~k 251 (487)
T PRK05225 250 EK 251 (487)
T ss_pred HH
Confidence 54
No 244
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.80 E-value=4.5e-05 Score=76.89 Aligned_cols=92 Identities=22% Similarity=0.365 Sum_probs=61.0
Q ss_pred eEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-c-cC--c
Q 009395 149 KVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-V-LD--Y 221 (535)
Q Consensus 149 kV~vIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~ 221 (535)
||+|||+ |.+|+++|..++..|+ +++++|+++ ....+. ++.+ .. ....+.. + ++ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~-DL~~--------~~--------~~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAA-DLSH--------IP--------TAASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEc-hhhc--------CC--------cCceEEEecCCCchH
Confidence 6999999 9999999999998886 899999987 211111 1110 00 0013332 2 23 6
Q ss_pred ccccCCCEEEEec--------------cCChHHHHHHHHHHHhhcCCCceee
Q 009395 222 ESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILA 259 (535)
Q Consensus 222 ~~~~~aDlVI~av--------------pe~~~~k~~v~~~l~~~~~~~~ii~ 259 (535)
+++++||+||.+. +.+..+.+++...+.++. ++++++
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iii 113 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMIL 113 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEE
Confidence 8899999999876 224556677777788775 555444
No 245
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=97.79 E-value=0.00012 Score=75.84 Aligned_cols=132 Identities=15% Similarity=0.182 Sum_probs=87.0
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchh----hcccC-----------------CCCCc
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT----LYKTD-----------------KIEPL 59 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~----~~~~~-----------------~~~~~ 59 (535)
|+|||++++|++|+++||||++||++++.+.+.+++ +++..+ |.... ..... .++..
T Consensus 168 l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~ 245 (381)
T PLN02988 168 VGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSND-PTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRR 245 (381)
T ss_pred HHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccC-HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Confidence 578999999999999999999999999988888877 554431 21100 00000 01100
Q ss_pred hHHHHHHHHHHH------------HHHH-hCCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhc---CHHHHHHHH
Q 009395 60 GEAREIFKFARA------------QARK-QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVH 123 (535)
Q Consensus 60 ~~~~~~~~~~~~------------~~~~-~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~---s~e~~~~i~ 123 (535)
+ ...+++..++ -... +.+++.+...+.+.++++...++.+.+..|...-..++. ++|+.|||+
T Consensus 246 ~-~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVR 324 (381)
T PLN02988 246 T-VEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCR 324 (381)
T ss_pred C-HHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHH
Confidence 0 0111111111 0100 234566778888999999988999999999999999988 699999999
Q ss_pred HHhh-cccCCCCC
Q 009395 124 IFFA-QRGTSKVP 135 (535)
Q Consensus 124 aF~~-kr~~~~~~ 135 (535)
+-+- |...++|.
T Consensus 325 A~LiDKd~~P~W~ 337 (381)
T PLN02988 325 AILVDKDKNPKWE 337 (381)
T ss_pred HHhcCCCCCCCCC
Confidence 8765 44444443
No 246
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=97.77 E-value=0.00011 Score=70.22 Aligned_cols=101 Identities=25% Similarity=0.399 Sum_probs=69.4
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (535)
+..||.|+|.|..|.++|..++.+|. ++.++|.++++++...-+++... .. -...++....|+..
T Consensus 19 ~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s------~f-------~~~~~V~~~~Dy~~ 85 (332)
T KOG1495|consen 19 KHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGS------AF-------LSTPNVVASKDYSV 85 (332)
T ss_pred cCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhcccc------cc-------ccCCceEecCcccc
Confidence 36799999999999999999999997 89999999998765432222111 00 11235666778888
Q ss_pred ccCCCEEEEeccC--------------ChHHHHHHHHHHHhhcCCCceeee
Q 009395 224 FKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILAS 260 (535)
Q Consensus 224 ~~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s 260 (535)
.+++++||...-. +.++.+.++.++.++ +|++++..
T Consensus 86 sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llv 135 (332)
T KOG1495|consen 86 SANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLV 135 (332)
T ss_pred cCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEE
Confidence 9999999987621 333445555566655 45665443
No 247
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.00074 Score=66.91 Aligned_cols=194 Identities=16% Similarity=0.175 Sum_probs=122.2
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (535)
+...|+.||++.||..++...+.+|+.|.+|+|...+.+...+.-.+ |. .|....++++
T Consensus 5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak--------~~-----------~i~ga~S~ed~v 65 (487)
T KOG2653|consen 5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAK--------GT-----------KIIGAYSLEDFV 65 (487)
T ss_pred cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhc--------CC-----------cccCCCCHHHHH
Confidence 45679999999999999999999999999999999998876543111 10 1222334433
Q ss_pred --ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc-Cc-H-HHHHhhcCCCCcEEeecccC---CCCCCCEE
Q 009395 224 --FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST-ID-L-NLIGERTYSKDRIVGAHFFS---PAHVMPLL 295 (535)
Q Consensus 224 --~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~-~~-~-~~l~~~~~~~~r~ig~h~~~---P~~~~~lv 295 (535)
++.--.||.-|.... ....++++|.+++.++.||++..-+ ++ . ....+.....--|+|.---. .+..+|
T Consensus 66 ~klk~PR~iillvkAG~-pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-- 142 (487)
T KOG2653|consen 66 SKLKKPRVIILLVKAGA-PVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-- 142 (487)
T ss_pred HhcCCCcEEEEEeeCCC-cHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC--
Confidence 455667777764332 3457789999999988888765432 32 1 12222223333466654321 122222
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCc-------eEEeCC-cccchh----hhhHH---HHHHHHHHHHHc--CCCHHHHH
Q 009395 296 EIVRTNQTSPQVIVDLLDIGKKIKKT-------PIVVGN-CTGFAV----NRMFF---PYTQAAFLLVER--GTDLYLID 358 (535)
Q Consensus 296 eiv~~~~ts~e~~~~~~~l~~~lGk~-------~i~v~d-~~G~i~----nri~~---~~~~ea~~l~~~--G~~~~~ID 358 (535)
.++|| .+++....++.+++.+... ..++++ ..|.++ |-|-+ .++.||..++.. |.+-++|-
T Consensus 143 SlMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia 220 (487)
T KOG2653|consen 143 SLMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIA 220 (487)
T ss_pred ccCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHH
Confidence 24555 4788888888888875322 234554 344333 44432 468999999875 56888888
Q ss_pred HHHHh
Q 009395 359 RAITK 363 (535)
Q Consensus 359 ~a~~g 363 (535)
.++..
T Consensus 221 ~vF~~ 225 (487)
T KOG2653|consen 221 EVFDD 225 (487)
T ss_pred HHHHh
Confidence 87654
No 248
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.76 E-value=6.1e-05 Score=76.29 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCC---CCcchhhhhc---CcchHHHHHHHHHhHhcCCCC
Q 009395 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFP---PYRFVTFIHR---GFSKSSSCFKNLLCYFDQGRN 531 (535)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~---~~~~g~~~~~---G~~~~~~~~~~~~~~~~~~~~ 531 (535)
.+++||++.++++||+.++++|++ ++++||.++..|+|++ ++|+.+.|.. |++........++..+.+++.
T Consensus 187 G~i~nrl~~a~~~EA~~l~~~g~~-~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~ 263 (308)
T PRK06129 187 GFVLNRLQGALLREAFRLVADGVA-SVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERG 263 (308)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccC
Confidence 479999999999999999999998 9999999999999998 7888888875 899999999999888877653
No 249
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.75 E-value=4.8e-05 Score=75.47 Aligned_cols=71 Identities=14% Similarity=0.285 Sum_probs=54.3
Q ss_pred ceEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
++|+|||.| .||.+||..|.++|++|++|++....++ +.+++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~ 202 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ 202 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence 689999996 9999999999999999999986543211 23578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (535)
||+||.|++....+... .+++++++++.+
T Consensus 203 ADIVIsavg~~~~v~~~-------~ik~GaiVIDvg 231 (301)
T PRK14194 203 ADIVVAAVGRPRLIDAD-------WLKPGAVVIDVG 231 (301)
T ss_pred CCEEEEecCChhcccHh-------hccCCcEEEEec
Confidence 99999999865433322 278899887654
No 250
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.74 E-value=0.00028 Score=72.91 Aligned_cols=102 Identities=19% Similarity=0.219 Sum_probs=68.4
Q ss_pred cceEEEEeC-ChhhHHHHHHHHhCCC-c----EE--EE--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 009395 147 VKKVAILGG-GLMGSGIATALILSNY-P----VI--LK--EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216 (535)
Q Consensus 147 ~~kV~vIG~-G~mG~~iA~~l~~~G~-~----V~--l~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (535)
.-||+|||+ |.+|.++|..++..|+ . |. ++ |++.+.++....++.+.... .+..++
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~--------------~~~~v~ 109 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYP--------------LLREVS 109 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhh--------------hcCceE
Confidence 358999999 9999999999998875 2 44 45 88888776544333322100 111233
Q ss_pred -cccCcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceeeecC
Q 009395 217 -GVLDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNT 262 (535)
Q Consensus 217 -~~~~~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (535)
.+.+++++++||+||.+. |. +..+.+++...|.++.+++++++..+
T Consensus 110 i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 110 IGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred EecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 245778999999999875 21 34456677777888777777665444
No 251
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.72 E-value=5e-05 Score=77.01 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=65.2
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--cc
Q 009395 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LL 215 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i 215 (535)
.||+|||+ |.+|.++|..++..|. +++++|++++. ++....++.+.. + .... .+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~---------~-----~~~~~~~i 68 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCA---------F-----PLLAEIVI 68 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhcc---------c-----cccCceEE
Confidence 58999999 9999999999998886 79999996432 322111111100 0 0001 23
Q ss_pred ccccCcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceeeecC
Q 009395 216 TGVLDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNT 262 (535)
Q Consensus 216 ~~~~~~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (535)
. +.+++++++||+||.+. |. +..+.+++..+|.++.+++.+++..|
T Consensus 69 ~-~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 69 T-DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred e-cCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 2 45678999999999876 11 34456777778888886566554443
No 252
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.69 E-value=0.00026 Score=71.61 Aligned_cols=99 Identities=18% Similarity=0.104 Sum_probs=70.8
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (535)
++|+|||.|.+|+.+|..+..-|.+|..||+.....+ .+ +. ..+++ .++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~---------------~~-------------~~-~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN---------------EE-------------YE-RVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc---------------cC-------------ce-eecHHHHhhc
Confidence 6899999999999999999888999999998632100 00 01 12343 4789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~ 275 (535)
||+|+.++|-.++.+.-+=++....++++++++..+-+ +.-+.|.+.+.
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~ 247 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALD 247 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 99999999988776544445677789999988643333 34456767664
No 253
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.68 E-value=0.00019 Score=72.18 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=62.1
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-c-C--
Q 009395 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-L-D-- 220 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~-- 220 (535)
+||+|||+ |.+|+++|..++..|+ +++++|++ .++....++.+.. ....+... . +
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~----------------~~~~i~~~~~~~~~ 62 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHIN----------------TPAKVTGYLGPEEL 62 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCC----------------CcceEEEecCCCch
Confidence 48999999 9999999999998885 89999998 2221111111100 00134432 2 2
Q ss_pred cccccCCCEEEEec--c------------CChHHHHHHHHHHHhhcCCCceeeecC
Q 009395 221 YESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (535)
Q Consensus 221 ~~~~~~aDlVI~av--p------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (535)
++++++||+||.+. | .+..+.+++...+.++.+ +++++..|
T Consensus 63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p-~a~vivvt 117 (310)
T cd01337 63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACP-KALILIIS 117 (310)
T ss_pred HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEcc
Confidence 68999999999876 2 244566667777777754 56554333
No 254
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.67 E-value=0.0002 Score=64.41 Aligned_cols=98 Identities=22% Similarity=0.264 Sum_probs=60.1
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (535)
+++.|+|.|..|.++|+.|...|..|+++|++|-+.-++. -.| ....+-.+++..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-----------~dG-------------f~v~~~~~a~~~a 79 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-----------MDG-------------FEVMTLEEALRDA 79 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------HTT--------------EEE-HHHHTTT-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-----------hcC-------------cEecCHHHHHhhC
Confidence 5799999999999999999999999999999997643332 122 2222222557899
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc---CcHHHHHhh
Q 009395 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGER 273 (535)
Q Consensus 228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~ 273 (535)
|++|.+.-...-+.. +....+++++|+++.++. +.+..+.+.
T Consensus 80 di~vtaTG~~~vi~~----e~~~~mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 80 DIFVTATGNKDVITG----EHFRQMKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp SEEEE-SSSSSSB-H----HHHHHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred CEEEECCCCccccCH----HHHHHhcCCeEEeccCcCceeEeecccccc
Confidence 999988764322222 334457899999866653 355555443
No 255
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.66 E-value=0.0003 Score=69.59 Aligned_cols=85 Identities=22% Similarity=0.296 Sum_probs=55.5
Q ss_pred ceEEEEeCChhhHHHHHHHHhC--CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395 148 KKVAILGGGLMGSGIATALILS--NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~--G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (535)
+||+|||+|.||..++..+.+. +++ +.++|+++++.+...+. .+ ....+++++
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~----------~~-------------~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK----------TG-------------AKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh----------cC-------------CeeECCHHHH
Confidence 5899999999999999998876 355 55899998876543210 01 112344544
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCcee
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL 258 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii 258 (535)
+.++|+|++|+|.+ ...++..++.+. ..+.++
T Consensus 59 l~~~DvVvi~a~~~--~~~~~~~~al~~-Gk~Vvv 90 (265)
T PRK13304 59 VEDVDLVVECASVN--AVEEVVPKSLEN-GKDVII 90 (265)
T ss_pred hcCCCEEEEcCChH--HHHHHHHHHHHc-CCCEEE
Confidence 47899999999743 334555554432 334444
No 256
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.65 E-value=0.00053 Score=69.70 Aligned_cols=101 Identities=16% Similarity=0.125 Sum_probs=70.6
Q ss_pred ceEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009395 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 225 (535)
++|+|||.|.+|..+|+.+. .-|.+|..||+........ ..+ +.. .+++ .++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~------------~~~-------------~~~-~~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEE------------RFN-------------ARY-CDLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHH------------hcC-------------cEe-cCHHHHHH
Confidence 78999999999999999987 6788999999863211000 001 111 2343 478
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-c--CcHHHHHhhcC
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERTY 275 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~ 275 (535)
.||+|+.++|-.++...-+=++....++++++++ |++ + +.-+.|.+.+.
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQ 251 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 9999999999888765444456777889999886 554 2 34456777664
No 257
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.65 E-value=8e-05 Score=74.86 Aligned_cols=94 Identities=24% Similarity=0.284 Sum_probs=62.1
Q ss_pred EEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCE
Q 009395 152 ILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDM 229 (535)
Q Consensus 152 vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 229 (535)
|||+|.+|+.+|..++..|. ++.++|++++.++....++++..... + + .-.+. ..+++++++||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~---~--~-------~~~i~-~~~~~~~~daDi 67 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFL---P--T-------PKKIR-SGDYSDCKDADL 67 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhccc---C--C-------CeEEe-cCCHHHHCCCCE
Confidence 68999999999999998886 79999999877654443333221000 0 0 01232 356889999999
Q ss_pred EEEeccC--------------ChHHHHHHHHHHHhhcCCCceee
Q 009395 230 VIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (535)
Q Consensus 230 VI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (535)
||.+.-. +..+.+++...+.++. ++++++
T Consensus 68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vi 110 (299)
T TIGR01771 68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFL 110 (299)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 9987621 3345666667777765 455443
No 258
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.64 E-value=0.00021 Score=71.77 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=61.9
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (535)
+||.|||.|.+|..++..+...|.+|+++|+++++.+.+. ..|.- .+. ..++ +.+.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~-----------~~G~~----------~~~-~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT-----------EMGLS----------PFH-LSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCCe----------eec-HHHHHHHhCC
Confidence 5899999999999999999999999999999987654332 11210 000 1122 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (535)
+|+||.++|... +-++..+.++++.++++..+.
T Consensus 211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccC
Confidence 999999998421 223444557778877765553
No 259
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=97.63 E-value=5.6e-05 Score=73.58 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=38.9
Q ss_pred CccCCCCCChhHHHhCCCcceecCC-CchHHHHHHHHHHhhcc
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEH 42 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~-~~l~~~a~~~a~~la~~ 42 (535)
|+++|++++|+||+++||||+|||+ +++++.|.++|+++++.
T Consensus 160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~ 202 (239)
T PLN02267 160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAAR 202 (239)
T ss_pred HHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999985 68999999999999985
No 260
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.63 E-value=7e-05 Score=77.41 Aligned_cols=98 Identities=13% Similarity=0.206 Sum_probs=66.3
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (535)
++|+|||.|.||+.+|..+...|++|.+||+.....+ +. .. ..+++ .+++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~~------------~~-~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------GD------------GD-FVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------cC------------cc-ccCHHHHHhh
Confidence 6899999999999999999999999999998543210 00 00 12344 3689
Q ss_pred CCEEEEeccCChH---HHHHHH-HHHHhhcCCCceeeecCCc--CcHHHHHhhc
Q 009395 227 VDMVIEAIIENVS---LKQQIF-ADLEKYCPPHCILASNTST--IDLNLIGERT 274 (535)
Q Consensus 227 aDlVI~avpe~~~---~k~~v~-~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~ 274 (535)
||+|+.++|-..+ -...++ ++....++++++++..+-+ +.-..+.+.+
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL 221 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREAL 221 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHH
Confidence 9999999996542 122333 4566678999988643333 3334565555
No 261
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.62 E-value=0.00013 Score=67.40 Aligned_cols=98 Identities=24% Similarity=0.269 Sum_probs=58.1
Q ss_pred eEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-------
Q 009395 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD------- 220 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~------- 220 (535)
||+|||+|.+|+.++..|++.|. +++++|.+.-.......++. ... .-|.-..+.+...+.++.+..+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~--~~~--~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~ 76 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY--FLS--QIGEPKVEALKENLREINPFVKIEAINIK 76 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc--cHh--hCCChHHHHHHHHHHHHCCCCEEEEEEee
Confidence 58999999999999999999998 59999998521111111110 001 1121111222222222221111
Q ss_pred -----c-ccccCCCEEEEeccCChHHHHHHHHHHHhh
Q 009395 221 -----Y-ESFKDVDMVIEAIIENVSLKQQIFADLEKY 251 (535)
Q Consensus 221 -----~-~~~~~aDlVI~avpe~~~~k~~v~~~l~~~ 251 (535)
. +.++++|+||+| .++...+..+.......
T Consensus 77 ~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 77 IDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred cChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 1 236789999999 56788877777766654
No 262
>PLN00106 malate dehydrogenase
Probab=97.62 E-value=7.7e-05 Score=75.48 Aligned_cols=91 Identities=21% Similarity=0.305 Sum_probs=59.1
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccC---
Q 009395 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD--- 220 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~--- 220 (535)
.||+|||+ |.+|+.+|..++..++ +++++|+++ .+.....+.+. . . .-.+.. +.+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~-------~--------~-~~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHI-------N--------T-PAQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhC-------C--------c-CceEEEEeCCCCH
Confidence 59999999 9999999999998776 899999987 11100011000 0 0 002221 223
Q ss_pred cccccCCCEEEEec--------------cCChHHHHHHHHHHHhhcCCCc
Q 009395 221 YESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHC 256 (535)
Q Consensus 221 ~~~~~~aDlVI~av--------------pe~~~~k~~v~~~l~~~~~~~~ 256 (535)
++++++||+||.+. +.+..+.+++.+.+.++.++..
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~ai 130 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNAL 130 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 57899999999876 2345566777777777775443
No 263
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.59 E-value=0.00014 Score=64.20 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=51.8
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (535)
-++|.|||+|-||++++..|+..|.+ |++++|+.++++...+.+ ....+ .....+++ +.+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~ 73 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEAL 73 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHH
Confidence 46899999999999999999999986 999999999877654321 00000 01112222 246
Q ss_pred cCCCEEEEeccCCh
Q 009395 225 KDVDMVIEAIIENV 238 (535)
Q Consensus 225 ~~aDlVI~avpe~~ 238 (535)
.++|+||.|+|...
T Consensus 74 ~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 74 QEADIVINATPSGM 87 (135)
T ss_dssp HTESEEEE-SSTTS
T ss_pred hhCCeEEEecCCCC
Confidence 78999999997553
No 264
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.57 E-value=0.00014 Score=73.58 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=30.7
Q ss_pred CCcceEEEEeC-ChhhHHHHHHHHhCC--CcEEEEeCC
Q 009395 145 RRVKKVAILGG-GLMGSGIATALILSN--YPVILKEVN 179 (535)
Q Consensus 145 ~~~~kV~vIG~-G~mG~~iA~~l~~~G--~~V~l~d~~ 179 (535)
.+++||+|||+ |.+|+.+|..++..+ .+++++|++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~ 43 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV 43 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 45789999999 999999999999666 489999993
No 265
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.56 E-value=0.0023 Score=64.10 Aligned_cols=157 Identities=16% Similarity=0.084 Sum_probs=90.0
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCcccccCCCEEEEeccC
Q 009395 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (535)
Q Consensus 158 mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe 236 (535)
||+.+|..|+++|++|++++|+ +..+... +.|. +...........+..+++.+.+..+|+||.|++.
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~-----------~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs 69 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALN-----------QEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKA 69 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHH-----------HCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccc
Confidence 7999999999999999999997 4444332 1121 0000000000022334455557789999999975
Q ss_pred ChHHHHHHHHHHHhhcCCCceeeecCCcCcH-HHHHhhcCCCCcEEeeccc------CCCCC----CCEEEEEeCCCCCH
Q 009395 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHFF------SPAHV----MPLLEIVRTNQTSP 305 (535)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~ig~h~~------~P~~~----~~lveiv~~~~ts~ 305 (535)
. ...++++.+.+++.++++|++..-++.. +.+...++. .++++.... .|... ...+.+-..+.. .
T Consensus 70 ~--~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~-~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~-~ 145 (293)
T TIGR00745 70 Y--QTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPA-RRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGE-N 145 (293)
T ss_pred h--hHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCc-cCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCc-h
Confidence 4 2467788999999888888776667644 445555543 344432221 23211 011222222222 2
Q ss_pred HHHHHHHHHHHhcCCceEEeCCccc
Q 009395 306 QVIVDLLDIGKKIKKTPIVVGNCTG 330 (535)
Q Consensus 306 e~~~~~~~l~~~lGk~~i~v~d~~G 330 (535)
+..+.+.+.+...|.......|..+
T Consensus 146 ~~~~~l~~~l~~~~~~~~~~~di~~ 170 (293)
T TIGR00745 146 EAVEALAELLNEAGIPAELHGDILA 170 (293)
T ss_pred HHHHHHHHHHHhCCCCCEecchHHH
Confidence 5566777778877766655555433
No 266
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.55 E-value=0.00044 Score=68.53 Aligned_cols=79 Identities=23% Similarity=0.180 Sum_probs=52.7
Q ss_pred CcceEEEEeCChhhHHHHHHHHhC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395 146 RVKKVAILGGGLMGSGIATALILS--NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (535)
+..||+|||+|.||..++..+.+. +++|. ++|+++++.+...+. .| .....++++
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~----------~g------------~~~~~~~~e 62 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG----------LR------------RPPPVVPLD 62 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh----------cC------------CCcccCCHH
Confidence 357899999999999999998863 77776 889998876543211 11 011223443
Q ss_pred c-ccCCCEEEEeccCChHHHHHHHHHH
Q 009395 223 S-FKDVDMVIEAIIENVSLKQQIFADL 248 (535)
Q Consensus 223 ~-~~~aDlVI~avpe~~~~k~~v~~~l 248 (535)
+ +.++|+|++|.|.+.. .++...+
T Consensus 63 ell~~~D~Vvi~tp~~~h--~e~~~~a 87 (271)
T PRK13302 63 QLATHADIVVEAAPASVL--RAIVEPV 87 (271)
T ss_pred HHhcCCCEEEECCCcHHH--HHHHHHH
Confidence 3 5679999999996532 4444433
No 267
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.54 E-value=0.00016 Score=75.83 Aligned_cols=99 Identities=23% Similarity=0.268 Sum_probs=71.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (535)
++|+|||.|.+|+.+|..+...|.+|..||+++... .+ ......+++ .++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~ 203 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------LG------------NARQVGSLEELLAQ 203 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------cC------------CceecCCHHHHHhh
Confidence 689999999999999999999999999999864210 00 011122444 4789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-c--CcHHHHHhhcC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERTY 275 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~ 275 (535)
||+|+.++|-..+.+.-+=++....++++++++ |+| + +.-+.|.+.+.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILI-NASRGTVVDIDALADALK 254 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHH
Confidence 999999999887765444456777889999886 454 3 34456666663
No 268
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.52 E-value=0.0012 Score=62.45 Aligned_cols=39 Identities=28% Similarity=0.425 Sum_probs=35.7
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (535)
++|+|+|.|.||..+|+.|.+.|++|+++|+++++++..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~ 67 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA 67 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 589999999999999999999999999999998876554
No 269
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.52 E-value=8.5e-05 Score=75.41 Aligned_cols=100 Identities=20% Similarity=0.169 Sum_probs=63.5
Q ss_pred eEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-
Q 009395 149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG- 217 (535)
Q Consensus 149 kV~vIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~- 217 (535)
||+|||+ |.+|+.+|..++..|+ +++++|+++ +.++.....+.+... ........
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~--------------~~~~~~~i~ 67 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAF--------------PLLKGVVIT 67 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcc--------------cccCCcEEe
Confidence 7999999 9999999999998764 499999987 543221111111000 00011111
Q ss_pred ccCcccccCCCEEEEec--c------------CChHHHHHHHHHHHhhcCCCceeeecC
Q 009395 218 VLDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (535)
Q Consensus 218 ~~~~~~~~~aDlVI~av--p------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (535)
+.+++++++||+||.+. | .+..+.+++..++.++.+++.+++..|
T Consensus 68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 34668899999999875 2 144466777778888875566554443
No 270
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.51 E-value=0.00065 Score=68.95 Aligned_cols=96 Identities=18% Similarity=0.186 Sum_probs=70.2
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (535)
++|+|||.|.+|+.+|+.+..-|.+|..||+..... . . . ..+++ .++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-----------------~------------~-~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-R-----------------P------------D-RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-c-----------------c------------c-ccCHHHHHHh
Confidence 689999999999999999998899999999863210 0 0 0 11343 4789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-c--CcHHHHHhhcC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERTY 275 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~ 275 (535)
||+|+.++|-.++...-+=++....++++++++ |++ + +.-+.|.+.+.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLI-NTARGGLVDEQALADALR 248 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 999999999887765444467777899999886 554 3 34456766664
No 271
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.51 E-value=0.0006 Score=69.07 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=70.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (535)
++|+|||.|.+|+.+|+.+..-|.+|+.||+..... . ..+ ..+++ .++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~--~------------~~~----------------~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV--C------------REG----------------YTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc--c------------ccc----------------cCCHHHHHHh
Confidence 689999999999999999988899999999753210 0 000 12343 4789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-c--CcHHHHHhhcC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERTY 275 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~ 275 (535)
||+|+.++|-.++...-+=++....++++++++ |++ + +.-+.|.+.+.
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLI-NTGRGPLVDEQALLDALE 248 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 999999999877754444456777889999886 454 3 34556777664
No 272
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.50 E-value=0.00036 Score=70.82 Aligned_cols=93 Identities=18% Similarity=0.161 Sum_probs=60.0
Q ss_pred cceEEEEeCChhhHHHHHHHHh-C-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395 147 VKKVAILGGGLMGSGIATALIL-S-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~-~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (535)
.++|+|||+|.||..++..++. . ..+|++|+|++++.+...+.+.+ .|. .+....+. +.
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~a 186 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAA 186 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHH
Confidence 4579999999999999985554 3 46899999999987766543211 110 12223344 35
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (535)
+.+||+||.|.+... .++.. +.+++++.|...++
T Consensus 187 v~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig~ 220 (314)
T PRK06141 187 VRQADIISCATLSTE----PLVRG--EWLKPGTHLDLVGN 220 (314)
T ss_pred HhcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeCC
Confidence 789999998887542 22221 35677775544443
No 273
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.44 E-value=0.00029 Score=71.58 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=62.0
Q ss_pred eEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc
Q 009395 149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV 218 (535)
Q Consensus 149 kV~vIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 218 (535)
||+|||+ |.+|+.+|..++..|+ +++++|+++.. ++....++.+. .. .....+..+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~-------------~~-~~~~~~~~~ 66 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDC-------------AF-PLLDGVVPT 66 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcc-------------cc-hhcCceecc
Confidence 6999999 9999999999998665 59999996542 21111111100 00 001223333
Q ss_pred -cCcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceeeecC
Q 009395 219 -LDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNT 262 (535)
Q Consensus 219 -~~~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (535)
.+++++++||+||.+. |. +..+.+++..+|.++.+++++++..|
T Consensus 67 ~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 67 HDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred CChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 3478899999999875 21 23345666677888765666655444
No 274
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.39 E-value=0.0017 Score=59.86 Aligned_cols=74 Identities=22% Similarity=0.306 Sum_probs=45.7
Q ss_pred eEEEEeCChhhHHH--HHHHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 009395 149 KVAILGGGLMGSGI--ATALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (535)
Q Consensus 149 kV~vIG~G~mG~~i--A~~l~~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (535)
||+|||+|..-.+. ...+... +-+++++|+|+++++....-.+... +.-..+ -++..++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~----~~~~~~--------~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMV----EEAGAD--------LKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHH----HHCTTS--------SEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHH----HhcCCC--------eEEEEeCCHH
Confidence 79999999876553 2233332 2389999999999876543333222 211111 246667887
Q ss_pred ccccCCCEEEEec
Q 009395 222 ESFKDVDMVIEAI 234 (535)
Q Consensus 222 ~~~~~aDlVI~av 234 (535)
+++++||+||.++
T Consensus 69 eAl~gADfVi~~i 81 (183)
T PF02056_consen 69 EALEGADFVINQI 81 (183)
T ss_dssp HHHTTESEEEE--
T ss_pred HHhCCCCEEEEEe
Confidence 5699999999877
No 275
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.38 E-value=0.00022 Score=73.53 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=65.3
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-ccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 226 (535)
++|+|||.|.||+.+|..+...|.+|.+||+..... +. ... ..++++ +++
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~-----------------~~-----------~~~-~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR-----------------GD-----------EGD-FRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc-----------------cc-----------ccc-cCCHHHHHhh
Confidence 589999999999999999999999999999743210 00 000 124444 689
Q ss_pred CCEEEEeccCChH----HHHHHH-HHHHhhcCCCceeeecCC-c--CcHHHHHhhc
Q 009395 227 VDMVIEAIIENVS----LKQQIF-ADLEKYCPPHCILASNTS-T--IDLNLIGERT 274 (535)
Q Consensus 227 aDlVI~avpe~~~----~k~~v~-~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~ 274 (535)
||+|+.++|-..+ . ..++ ++....++++++++ |+| + +.-+.|.+.+
T Consensus 168 sDiI~lh~PLt~~g~~~T-~~li~~~~l~~mk~gailI-N~aRG~vVDe~AL~~aL 221 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKT-LHLADEKLIRSLKPGAILI-NACRGAVVDNTALLTCL 221 (378)
T ss_pred CCEEEEeCCCCCCccccc-ccccCHHHHhcCCCCcEEE-ECCCchhcCHHHHHHHH
Confidence 9999999985442 2 2233 45666789999886 554 3 3344565655
No 276
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.36 E-value=0.00099 Score=69.39 Aligned_cols=132 Identities=17% Similarity=0.082 Sum_probs=83.2
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCc--ch--hhc----------------ccC-CCCCc
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPW--VA--TLY----------------KTD-KIEPL 59 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~--~~--~~~----------------~~~-~~~~~ 59 (535)
|+|||++++|++|+++||+|++||++++ +.+.+.+.++...+ +. .. ..+ ... .++..
T Consensus 201 L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~ 278 (407)
T PLN02851 201 LALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDD-PAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHD 278 (407)
T ss_pred HHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCC-HHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCC
Confidence 5789999999999999999999999987 55666655543321 00 00 000 000 01111
Q ss_pred hHHHHHHHHHHH-----------HHHH--hCCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHh---cCHHHHHHHH
Q 009395 60 GEAREIFKFARA-----------QARK--QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL---RSETCKSLVH 123 (535)
Q Consensus 60 ~~~~~~~~~~~~-----------~~~~--~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~---~s~e~~~~i~ 123 (535)
+. ..+++..+. ...+ ..+++.+...+.+.++++...++++.+..|...-..++ .++|+.|||+
T Consensus 279 sv-~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVR 357 (407)
T PLN02851 279 TV-EEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVR 357 (407)
T ss_pred CH-HHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence 00 111111110 0111 13456677888889999998999999999999888887 4899999999
Q ss_pred HHhh-cccCCCCC
Q 009395 124 IFFA-QRGTSKVP 135 (535)
Q Consensus 124 aF~~-kr~~~~~~ 135 (535)
+-+- |...+++.
T Consensus 358 A~LIDKd~~P~W~ 370 (407)
T PLN02851 358 ARLVDKDFAPKWD 370 (407)
T ss_pred HHhcCCCCCCCCC
Confidence 8654 54444443
No 277
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.35 E-value=0.00037 Score=69.36 Aligned_cols=71 Identities=15% Similarity=0.267 Sum_probs=53.5
Q ss_pred ceEEEEe-CChhhHHHHHHHHhCCCcEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 148 KKVAILG-GGLMGSGIATALILSNYPVILKE-VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 148 ~kV~vIG-~G~mG~~iA~~l~~~G~~V~l~d-~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
++|+||| .|.||.+||..|.++|++|++|+ ++++. + +.++
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l-~-------------------------------------e~~~ 200 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDL-P-------------------------------------AVCR 200 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCH-H-------------------------------------HHHh
Confidence 6899999 89999999999999999999995 55321 0 2256
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (535)
.||+||.|++....+. .. ++++++++++.+.
T Consensus 201 ~ADIVIsavg~~~~v~-~~------~lk~GavVIDvGi 231 (296)
T PRK14188 201 RADILVAAVGRPEMVK-GD------WIKPGATVIDVGI 231 (296)
T ss_pred cCCEEEEecCChhhcc-hh------eecCCCEEEEcCC
Confidence 8999999998653322 21 2788998876543
No 278
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.34 E-value=0.0019 Score=68.08 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=72.5
Q ss_pred ceEEEEeCChh-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (535)
Q Consensus 148 ~kV~vIG~G~m-G~~iA~~l~~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (535)
.||+|||+|.- ...+...+++. +-+|+++|+++++++....-.++. .+....+ -++..|+|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~----~~~~g~~--------~~v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRY----VEEVGAD--------IKFEKTMDL 68 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHH----HHhhCCC--------eEEEEeCCH
Confidence 48999999874 44556666644 358999999999987633222222 2221110 146667787
Q ss_pred -ccccCCCEEEEecc----------------------------------CChHHHHHHHHHHHhhcCCCceee--ecCCc
Q 009395 222 -ESFKDVDMVIEAII----------------------------------ENVSLKQQIFADLEKYCPPHCILA--SNTST 264 (535)
Q Consensus 222 -~~~~~aDlVI~avp----------------------------------e~~~~k~~v~~~l~~~~~~~~ii~--s~tS~ 264 (535)
+++.+||+||.++- -+..+..++.+++.++++ +++++ ||-..
T Consensus 69 ~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P-~a~lin~TNP~d 147 (425)
T cd05197 69 EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSP-DAWYLNFTNPAG 147 (425)
T ss_pred HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCC-CcEEEecCChHH
Confidence 56999999997761 134466677788888774 45443 33332
Q ss_pred CcHHHHHhhcCCCCcEEee
Q 009395 265 IDLNLIGERTYSKDRIVGA 283 (535)
Q Consensus 265 ~~~~~l~~~~~~~~r~ig~ 283 (535)
+-...+.... ...|++|+
T Consensus 148 i~t~a~~~~~-p~~rviG~ 165 (425)
T cd05197 148 EVTEAVRRYV-PPEKAVGL 165 (425)
T ss_pred HHHHHHHHhC-CCCcEEEE
Confidence 2222222222 23567775
No 279
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.32 E-value=0.0012 Score=68.89 Aligned_cols=86 Identities=20% Similarity=0.176 Sum_probs=61.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (535)
++|+|+|+|.+|..++..+...|.+|+++|+++.+++.+. ..|. + .....+.+.++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~-----------~~G~-~------------~~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA-----------MEGY-E------------VMTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH-----------hcCC-E------------EccHHHHHcCC
Confidence 5899999999999999999999999999999998876543 2232 0 01111345789
Q ss_pred CEEEEeccCChHHHHHHHH-HHHhhcCCCceeeecC
Q 009395 228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNT 262 (535)
Q Consensus 228 DlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~t 262 (535)
|+||+|.... .++. .....++++.+++...
T Consensus 259 DVVI~atG~~-----~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 259 DIFVTTTGNK-----DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CEEEECCCCH-----HHHHHHHHhcCCCCcEEEEeC
Confidence 9999998532 2333 3455678888776443
No 280
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.31 E-value=0.0023 Score=67.55 Aligned_cols=75 Identities=25% Similarity=0.305 Sum_probs=49.4
Q ss_pred ceEEEEeCChh-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (535)
Q Consensus 148 ~kV~vIG~G~m-G~~iA~~l~~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (535)
+||+|||+|.. +..+...++.. +-+|+++|+++++++....-.+ +.+++...+ -++..|+|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~----~~~~~~g~~--------~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVK----ILFKENYPE--------IKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHH----HHHHhhCCC--------eEEEEECCH
Confidence 58999999875 33455555544 3589999999999876332222 222221111 146677787
Q ss_pred -ccccCCCEEEEec
Q 009395 222 -ESFKDVDMVIEAI 234 (535)
Q Consensus 222 -~~~~~aDlVI~av 234 (535)
+++++||+||.++
T Consensus 69 ~eAl~gADfVi~~i 82 (437)
T cd05298 69 EEAFTDADFVFAQI 82 (437)
T ss_pred HHHhCCCCEEEEEe
Confidence 5799999999877
No 281
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.29 E-value=0.0015 Score=68.70 Aligned_cols=75 Identities=24% Similarity=0.309 Sum_probs=48.3
Q ss_pred ceEEEEeCChhhH-HHHHHHHhC-----CCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395 148 KKVAILGGGLMGS-GIATALILS-----NYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (535)
Q Consensus 148 ~kV~vIG~G~mG~-~iA~~l~~~-----G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (535)
+||+|||+|..-+ .+...++.. +-+|+++|++ +++++....-+++.. +....+ -++..|+|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~----~~~~~~--------~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMV----KKAGLP--------IKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHH----HhhCCC--------eEEEEeCC
Confidence 4899999988643 455555553 3589999999 788765332222222 221110 14566777
Q ss_pred c-ccccCCCEEEEec
Q 009395 221 Y-ESFKDVDMVIEAI 234 (535)
Q Consensus 221 ~-~~~~~aDlVI~av 234 (535)
. +++.+||+||.++
T Consensus 69 ~~~al~gadfVi~~~ 83 (419)
T cd05296 69 RREALEGADFVFTQI 83 (419)
T ss_pred HHHHhCCCCEEEEEE
Confidence 7 5689999999887
No 282
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.29 E-value=0.00059 Score=69.17 Aligned_cols=94 Identities=19% Similarity=0.118 Sum_probs=58.4
Q ss_pred cceEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
-++|+|||+|.||..++..+...| .+|+++|+++++.+...+.+ |. . .+...+..+.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~----------g~-~---------~~~~~~~~~~l~ 237 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL----------GG-N---------AVPLDELLELLN 237 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc----------CC-e---------EEeHHHHHHHHh
Confidence 468999999999999999998866 58999999998765443211 11 0 000111123467
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhc-CCCceeeecC
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYC-PPHCILASNT 262 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~-~~~~ii~s~t 262 (535)
++|+||.|++.... ..++..+.+.. ..+.++++.+
T Consensus 238 ~aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 238 EADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred cCCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeC
Confidence 89999999985433 33344333222 2345555443
No 283
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.0021 Score=61.96 Aligned_cols=94 Identities=23% Similarity=0.321 Sum_probs=62.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccCc---c-
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDY---E- 222 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~---~- 222 (535)
++|.|||+|.+|.++|..|.+.|++|+++|.+++.++..... .+... .+.. .++. +
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~~----------------~v~gd~t~~~~L~~ 61 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDTH----------------VVIGDATDEDVLEE 61 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcceE----------------EEEecCCCHHHHHh
Confidence 579999999999999999999999999999999998763310 00000 0111 1121 1
Q ss_pred -cccCCCEEEEeccCChHHHHHHHHHHHhh-cCCCceeeecC
Q 009395 223 -SFKDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNT 262 (535)
Q Consensus 223 -~~~~aDlVI~avpe~~~~k~~v~~~l~~~-~~~~~ii~s~t 262 (535)
.+.++|.+|-++.+|.. ..++..+... +....+++-..
T Consensus 62 agi~~aD~vva~t~~d~~--N~i~~~la~~~~gv~~viar~~ 101 (225)
T COG0569 62 AGIDDADAVVAATGNDEV--NSVLALLALKEFGVPRVIARAR 101 (225)
T ss_pred cCCCcCCEEEEeeCCCHH--HHHHHHHHHHhcCCCcEEEEec
Confidence 26889999999987643 4555555433 44445555433
No 284
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.28 E-value=0.0005 Score=68.25 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=36.5
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
-++|.|+|+|.+|.+++..++..|++|++++|++++.+...
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la 157 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELA 157 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 35799999999999999999999999999999988776544
No 285
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.27 E-value=0.0016 Score=73.03 Aligned_cols=95 Identities=12% Similarity=0.117 Sum_probs=76.4
Q ss_pred EEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc--HHHHHhhcCC-CCcEEeecccCCCC------------CCCE
Q 009395 230 VIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFFSPAH------------VMPL 294 (535)
Q Consensus 230 VI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~-~~r~ig~h~~~P~~------------~~~l 294 (535)
||.|+| +....++++++.++++++++|++.+|+.. +..+.+.++. +.+|||.||+...+ .+..
T Consensus 1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 688998 45678999999999999999998888763 3444455543 35799999997543 2467
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 295 veiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~ 326 (535)
+.++|.+.++++.++.+.++++.+|..++.+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 110 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMS 110 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 78889999999999999999999999888886
No 286
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.27 E-value=0.0011 Score=67.66 Aligned_cols=93 Identities=12% Similarity=0.038 Sum_probs=61.2
Q ss_pred cceEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395 147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (535)
.++++|||+|.||...+..+.. ...+|.+||+++++.+...+.+.+ .|. .+...++. +.
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g~-----------~v~~~~~~~ea 189 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YEV-----------PVRAATDPREA 189 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hCC-----------cEEEeCCHHHH
Confidence 4679999999999997666543 345899999999998766543321 110 12223344 55
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (535)
+++||+||.|+|.... ++. .+.+++++.|.+..|
T Consensus 190 v~~aDiVitaT~s~~P----~~~--~~~l~~g~~v~~vGs 223 (325)
T TIGR02371 190 VEGCDILVTTTPSRKP----VVK--ADWVSEGTHINAIGA 223 (325)
T ss_pred hccCCEEEEecCCCCc----Eec--HHHcCCCCEEEecCC
Confidence 8899999999986432 221 234678887655554
No 287
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.26 E-value=0.00053 Score=65.35 Aligned_cols=32 Identities=41% Similarity=0.503 Sum_probs=30.1
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~ 179 (535)
.+|+|||+|.+|+.+|..|++.|. +++++|.+
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 579999999999999999999998 59999998
No 288
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00048 Score=70.84 Aligned_cols=75 Identities=25% Similarity=0.271 Sum_probs=54.1
Q ss_pred cceEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCc---
Q 009395 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY--- 221 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 221 (535)
+++|.|||+|.+|+.+|..|+++| .+|++-||+.++++++..... +.+. .+... .+.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~---------~~~vD~~d~~al 62 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVE---------ALQVDAADVDAL 62 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccce---------eEEecccChHHH
Confidence 468999999999999999999999 899999999999887653211 0111 01110 111
Q ss_pred -ccccCCCEEEEeccCChH
Q 009395 222 -ESFKDVDMVIEAIIENVS 239 (535)
Q Consensus 222 -~~~~~aDlVI~avpe~~~ 239 (535)
+.+++.|+||.|+|....
T Consensus 63 ~~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 63 VALIKDFDLVINAAPPFVD 81 (389)
T ss_pred HHHHhcCCEEEEeCCchhh
Confidence 346788999999987644
No 289
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=97.24 E-value=0.0039 Score=60.96 Aligned_cols=203 Identities=18% Similarity=0.234 Sum_probs=115.5
Q ss_pred cceEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (535)
|.||+.||+|.+|++....++.+ .++|+++|.+..++..-...- +..++.-++. ..=.++-+++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~---------crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQ---------CRGKNLFFSTD 71 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHH---------hcCCceeeecc
Confidence 46899999999999988777655 468999999999876543221 1122222221 11124567788
Q ss_pred cc-cccCCCEEEEecc-------------CChHHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEee
Q 009395 221 YE-SFKDVDMVIEAII-------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGA 283 (535)
Q Consensus 221 ~~-~~~~aDlVI~avp-------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~ 283 (535)
.+ .++.+|+|+.+|. .|+......-+.|.+......|++ .-|++|+. .+...+.+.. -|+
T Consensus 72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~--~~i 148 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNS--KGI 148 (481)
T ss_pred hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCC--CCc
Confidence 75 5899999999982 255566666677888777777765 56777764 3444443222 245
Q ss_pred ccc---CCCCC----------CCEEEEEeCCCCCH--HHHHHHHHHHHhcC-CceEEeCCc-----ccchhhhhHHH---
Q 009395 284 HFF---SPAHV----------MPLLEIVRTNQTSP--QVIVDLLDIGKKIK-KTPIVVGNC-----TGFAVNRMFFP--- 339 (535)
Q Consensus 284 h~~---~P~~~----------~~lveiv~~~~ts~--e~~~~~~~l~~~lG-k~~i~v~d~-----~G~i~nri~~~--- 339 (535)
||- ||-.. .+--.++.|..|.+ ..++.+..++..+= +..+.+... .-...|..++.
T Consensus 149 ~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqris 228 (481)
T KOG2666|consen 149 KFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRIS 228 (481)
T ss_pred eeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHh
Confidence 552 33211 12223556655432 33444444555532 233333321 12233444332
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHH
Q 009395 340 YTQAAFLLVE-RGTDLYLIDRAI 361 (535)
Q Consensus 340 ~~~ea~~l~~-~G~~~~~ID~a~ 361 (535)
.+|....+.+ -|.+..++-.++
T Consensus 229 sins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 229 SINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred hhHHHHHHHHhcCCCHHHHHHHh
Confidence 2344455554 477888887764
No 290
>PLN02306 hydroxypyruvate reductase
Probab=97.22 E-value=0.00085 Score=69.70 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=72.1
Q ss_pred ceEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHH-HHHHHHHHHHHHHH-HHHcCCCCHHHHHhhhcccccccCccc-
Q 009395 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKF-LEAGIGRVRANLQS-RVKKGKMTQEKFEKTISLLTGVLDYES- 223 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~-~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~-~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (535)
++|+|||.|.+|+.+|+.+. .-|.+|..||+.... .+..... +.. ....+.. . ..+....++++
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~----~~~~l~~~~~~---~-----~~~~~~~~L~el 233 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTA----YGQFLKANGEQ---P-----VTWKRASSMEEV 233 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhh----hcccccccccc---c-----ccccccCCHHHH
Confidence 68999999999999999985 669999999987532 1110000 000 0000000 0 01111235544
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-c--CcHHHHHhhcC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERTY 275 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~ 275 (535)
++.||+|+.++|-..+...-+=++..+.++++++++ |++ + +.-..+.+.+.
T Consensus 234 l~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI-N~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 234 LREADVISLHPVLDKTTYHLINKERLALMKKEAVLV-NASRGPVIDEVALVEHLK 287 (386)
T ss_pred HhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 689999999999877765544467778899999886 554 3 34456666663
No 291
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.22 E-value=0.00082 Score=68.07 Aligned_cols=101 Identities=22% Similarity=0.156 Sum_probs=72.3
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (535)
=++++|||.|.+|..+|+.+..-|.+|..||+++.. +.. +.+ ...... + +.++
T Consensus 146 gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~-~~~------------~~~------------~~~y~~-l~ell~ 199 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNP-EAE------------KEL------------GARYVD-LDELLA 199 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCCh-HHH------------hhc------------Cceecc-HHHHHH
Confidence 378999999999999999999778899999998641 110 000 011222 4 4579
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc---CcHHHHHhhc
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERT 274 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~ 274 (535)
.||+|+..+|-..+...-+=++..+.++++.+++ |++- +.-..+.+.+
T Consensus 200 ~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL 250 (324)
T COG1052 200 ESDIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDAL 250 (324)
T ss_pred hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHH
Confidence 9999999999888765555567788899998775 6653 3444565655
No 292
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.21 E-value=0.0011 Score=66.32 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=51.7
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (535)
++|.|||+|.+|++++..|+..|. +|+++||+.++.+...+.+...+ +. ..+....++ +.+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~ 191 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA 191 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence 689999999999999999999998 79999999988776544332111 00 011111222 2467
Q ss_pred CCCEEEEeccCC
Q 009395 226 DVDMVIEAIIEN 237 (535)
Q Consensus 226 ~aDlVI~avpe~ 237 (535)
++|+||.|+|-.
T Consensus 192 ~aDiVInaTp~G 203 (284)
T PRK12549 192 AADGLVHATPTG 203 (284)
T ss_pred CCCEEEECCcCC
Confidence 899999998743
No 293
>PRK04148 hypothetical protein; Provisional
Probab=97.19 E-value=0.00094 Score=58.21 Aligned_cols=94 Identities=24% Similarity=0.246 Sum_probs=64.8
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (535)
+||.+||+| -|..+|..|.+.|++|+.+|+++++++.+.+. +. . ...+.+ +..+.+--+++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~~-~-----~v~dDl-f~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------GL-N-----AFVDDL-FNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------CC-e-----EEECcC-CCCCHHHHhcC
Confidence 579999999 89899999999999999999999987765421 10 0 000111 12344557899
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (535)
Q Consensus 228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (535)
|+|-.+-|. +++ +.-+.++.+.+..+.+|..-+
T Consensus 79 ~liysirpp-~el-~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 79 KLIYSIRPP-RDL-QPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred CEEEEeCCC-HHH-HHHHHHHHHHcCCCEEEEcCC
Confidence 999988874 444 344556777777777765433
No 294
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.16 E-value=0.0048 Score=60.41 Aligned_cols=146 Identities=19% Similarity=0.160 Sum_probs=88.4
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
-++|+|||.|.-|.+-|..|..+|.+|++--+.... -++ ..+.|. ..-+--++++
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~k-----------A~~dGf-------------~V~~v~ea~k 73 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKK-----------AKEDGF-------------KVYTVEEAAK 73 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHH-----------HHhcCC-------------EeecHHHHhh
Confidence 469999999999999999999999998876654333 222 223332 2222236689
Q ss_pred CCCEEEEeccCChHHHHHHHH-HHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCC----------CCE
Q 009395 226 DVDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV----------MPL 294 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~----------~~l 294 (535)
.+|+|+.-+|+. +-.++++ +|.+.++++..+. -+.++.+..-.-..+....++=+-|=.|-+. .|.
T Consensus 74 ~ADvim~L~PDe--~q~~vy~~~I~p~Lk~G~aL~-FaHGfNihf~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~ 150 (338)
T COG0059 74 RADVVMILLPDE--QQKEVYEKEIAPNLKEGAALG-FAHGFNIHFGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPA 150 (338)
T ss_pred cCCEEEEeCchh--hHHHHHHHHhhhhhcCCceEE-eccccceecceecCCccCcEEEEcCCCCcHHHHHHHHccCCcee
Confidence 999999999965 3467777 8999999988664 3444443211100111112222222223221 122
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCC
Q 009395 295 LEIVRTNQTSPQVIVDLLDIGKKIKK 320 (535)
Q Consensus 295 veiv~~~~ts~e~~~~~~~l~~~lGk 320 (535)
+.-+. ...+-...+.+..+.+.+|.
T Consensus 151 LiAV~-qD~sG~a~~~Ala~AkgiGg 175 (338)
T COG0059 151 LIAVH-QDASGKALDIALAYAKGIGG 175 (338)
T ss_pred EEEEE-eCCCchHHHHHHHHHHhcCC
Confidence 22222 23345578888888888884
No 295
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.15 E-value=0.00027 Score=76.36 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=40.5
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHR 43 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~ 43 (535)
|+|||++++|+||++|||||+|||++++++++.++|+++++.+
T Consensus 188 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~ 230 (546)
T TIGR03222 188 FCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQS 230 (546)
T ss_pred HHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999999999999999999864
No 296
>PRK05086 malate dehydrogenase; Provisional
Probab=97.15 E-value=0.0012 Score=66.95 Aligned_cols=94 Identities=20% Similarity=0.307 Sum_probs=56.4
Q ss_pred ceEEEEeC-ChhhHHHHHHHHh-C--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc--ccC-
Q 009395 148 KKVAILGG-GLMGSGIATALIL-S--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--VLD- 220 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~-~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~- 220 (535)
+||+|||+ |.+|.+++..+.. . +++++++|+++.....+. .+. ..+ ....+.. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~al-Dl~-------~~~---------~~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAV-DLS-------HIP---------TAVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceeh-hhh-------cCC---------CCceEEEeCCCCH
Confidence 58999999 9999999988854 2 468999999854210000 000 000 0012222 334
Q ss_pred cccccCCCEEEEecc--C------------ChHHHHHHHHHHHhhcCCCceee
Q 009395 221 YESFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILA 259 (535)
Q Consensus 221 ~~~~~~aDlVI~avp--e------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (535)
++++++||+||.|.- . +..+.+++...+.++. ++.+++
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivi 115 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIG 115 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 478899999999872 1 2224556666677664 445443
No 297
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.15 E-value=0.0015 Score=68.47 Aligned_cols=86 Identities=22% Similarity=0.180 Sum_probs=60.9
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (535)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+. ..|. .. .++ +.+++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-----------~~G~-------------~v-~~l~eal~~ 267 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAA-----------MDGF-------------RV-MTMEEAAEL 267 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-----------hcCC-------------Ee-cCHHHHHhC
Confidence 6899999999999999999999999999999987754321 1121 00 112 34678
Q ss_pred CCEEEEeccCChHHHHHHHH-HHHhhcCCCceeeecCC
Q 009395 227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTS 263 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS 263 (535)
+|+||.|+.. ..++. +....++++++++...+
T Consensus 268 aDVVI~aTG~-----~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 268 GDIFVTATGN-----KDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CCEEEECCCC-----HHHHHHHHHhcCCCCCEEEEcCC
Confidence 9999998742 23343 55667889988865443
No 298
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.12 E-value=0.0018 Score=56.15 Aligned_cols=103 Identities=20% Similarity=0.186 Sum_probs=58.5
Q ss_pred ceEEEEeC-ChhhHHHHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395 148 KKVAILGG-GLMGSGIATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (535)
+||+|+|+ |.||+.|+..+.+ .|+++. .+|++++.... +.+- .. .|.- ...+..+++++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g----~~--~~~~--------~~~~~v~~~l~~~ 64 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVG----EL--AGIG--------PLGVPVTDDLEEL 64 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCH----HH--CTSS--------T-SSBEBS-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhh----hh--hCcC--------CcccccchhHHHh
Confidence 48999999 9999999999988 688854 67887622100 0000 00 0000 012333456644
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHH
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 271 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~ 271 (535)
+..+|+||+.. .++...+.++...+ .+..+++.|++++-+++.
T Consensus 65 ~~~~DVvIDfT--~p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~ 107 (124)
T PF01113_consen 65 LEEADVVIDFT--NPDAVYDNLEYALK---HGVPLVIGTTGFSDEQID 107 (124)
T ss_dssp TTH-SEEEEES---HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHHH
T ss_pred cccCCEEEEcC--ChHHhHHHHHHHHh---CCCCEEEECCCCCHHHHH
Confidence 56799999987 34444444444433 366677788888765543
No 299
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.10 E-value=0.00086 Score=66.18 Aligned_cols=70 Identities=17% Similarity=0.317 Sum_probs=52.9
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (535)
++|+|||. |.||.++|..|.++|+.|++|..... ++ +.++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~ 200 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR 200 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence 68999999 99999999999999999999942111 22 2368
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (535)
+||+||.|++....+..+ ++++++++++.+
T Consensus 201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvg 230 (284)
T PRK14179 201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVG 230 (284)
T ss_pred hCCEEEEecCccccCCHH-------HccCCcEEEEec
Confidence 899999999754333322 378899887654
No 300
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.10 E-value=0.002 Score=67.01 Aligned_cols=98 Identities=23% Similarity=0.155 Sum_probs=65.8
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
-++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+. ..|. ...+..+.+++
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G~-------------~v~~leeal~~ 250 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDGF-------------RVMTMEEAAKI 250 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcCC-------------EeCCHHHHHhc
Confidence 36899999999999999999999999999999987643322 1221 01111134678
Q ss_pred CCEEEEeccCChHHHHHHHH-HHHhhcCCCceeeecCCc---CcHHHHHhh
Q 009395 227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTST---IDLNLIGER 273 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS~---~~~~~l~~~ 273 (535)
+|+||++... ..++. +....++++++++..+.. +....+.+.
T Consensus 251 aDVVItaTG~-----~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 251 GDIFITATGN-----KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred CCEEEECCCC-----HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 9999998753 23333 356678899887644432 444555543
No 301
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=97.09 E-value=0.00092 Score=67.83 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=34.9
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCch------------HHHHHHHHHHhhcc
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQL------------VSTARQWALDILEH 42 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l------------~~~a~~~a~~la~~ 42 (535)
|+++|++++|+||+++||||+|||+.++ ++.+.++++.+...
T Consensus 188 llltGe~~sA~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 241 (360)
T TIGR03200 188 SGTLCEPWSAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGE 241 (360)
T ss_pred HHHhCCcCcHHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCC
Confidence 5789999999999999999999999887 56666667666554
No 302
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=97.07 E-value=0.0018 Score=65.07 Aligned_cols=105 Identities=16% Similarity=0.076 Sum_probs=71.4
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
.-++|+|+|+|.+|..+|+.|...|..+.-+.|++...+...+ .+. ...+..+.+.
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~-----------~~~-------------~~~d~~~~~~ 216 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYE-----------YYA-------------EFVDIEELLA 216 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHH-----------hcc-------------cccCHHHHHh
Confidence 3479999999999999999999999444444555544332211 010 0112224578
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH--HHHHhhc
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERT 274 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~ 274 (535)
++|+|+.|.|-+.+...-+=+++...++++.+++...-+--+ ..+.+.+
T Consensus 217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL 267 (336)
T KOG0069|consen 217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL 267 (336)
T ss_pred hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH
Confidence 999999999998887666667888999999988755444333 3555555
No 303
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.06 E-value=0.002 Score=64.98 Aligned_cols=91 Identities=15% Similarity=0.160 Sum_probs=61.6
Q ss_pred cceEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395 147 VKKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (535)
.++|+|||+|.+|...+..++. .+. +|.+|++++++.+...+++.. .+. .+. ..+. +.
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~~-----------~~~-~~~~~~a 185 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LGP-----------TAE-PLDGEAI 185 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------eeE-ECCHHHH
Confidence 3579999999999999999864 564 799999999987766543321 110 111 2333 45
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (535)
+.+||+||.|.|.... ++.. .+++++.|....|
T Consensus 186 v~~aDiVitaT~s~~P----l~~~---~~~~g~hi~~iGs 218 (304)
T PRK07340 186 PEAVDLVVTATTSRTP----VYPE---AARAGRLVVAVGA 218 (304)
T ss_pred hhcCCEEEEccCCCCc----eeCc---cCCCCCEEEecCC
Confidence 7899999999986543 3322 3578876655544
No 304
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.05 E-value=0.00035 Score=75.67 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=40.4
Q ss_pred CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccC
Q 009395 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHR 43 (535)
Q Consensus 1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~ 43 (535)
|+|||++++|+||+++||||+|||++++++.+.++|+++++.+
T Consensus 192 llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~ 234 (550)
T PRK08184 192 FCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAAS 234 (550)
T ss_pred HHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999999999999999999874
No 305
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.04 E-value=0.0026 Score=58.19 Aligned_cols=76 Identities=25% Similarity=0.263 Sum_probs=54.8
Q ss_pred ceEEEEeCChh-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~m-G~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
++|.|||+|.| |..+|..|.+.|.+|++.+++.+.+. +.+.+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~ 87 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ 87 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence 68999999997 88899999999999999998753321 23678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 267 (535)
||+||.|++...-+..+ .++++.++++.+..-.+
T Consensus 88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~prdv 121 (168)
T cd01080 88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINRVP 121 (168)
T ss_pred CCEEEEcCCCCceecHH-------HccCCeEEEEccCCCcc
Confidence 99999999753222222 24556777766654443
No 306
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.03 E-value=0.0024 Score=55.09 Aligned_cols=100 Identities=22% Similarity=0.217 Sum_probs=58.7
Q ss_pred eEEEEeC-ChhhHHHHHHHHhC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCcccc
Q 009395 149 KVAILGG-GLMGSGIATALILS-NYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYESF 224 (535)
Q Consensus 149 kV~vIG~-G~mG~~iA~~l~~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 224 (535)
||+|||+ |.+|..++..+... ++++..+ +++.+.-+.+. . ..+.++... .. ..+ .+++ .
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~----~------~~~~~~~~~----~~--~~~~~~~~-~ 63 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVS----E------AGPHLKGEV----VL--ELEPEDFE-E 63 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHH----H------HCccccccc----cc--ccccCChh-h
Confidence 5899995 99999999988885 8887766 55432211111 0 001010000 00 011 1122 2
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (535)
Q Consensus 225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 267 (535)
.++|+||.|+|.+.. .+++..+...+.+++++++.+|++..
T Consensus 64 ~~~DvV~~~~~~~~~--~~~~~~~~~~~~~g~~viD~s~~~~~ 104 (122)
T smart00859 64 LAVDIVFLALPHGVS--KEIAPLLPKAAEAGVKVIDLSSAFRM 104 (122)
T ss_pred cCCCEEEEcCCcHHH--HHHHHHHHhhhcCCCEEEECCccccC
Confidence 489999999997643 34433445556789999888887654
No 307
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.03 E-value=0.0011 Score=71.71 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCC---CCcchhhhhcC-cchHHHHHHHHHhHh
Q 009395 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFP---PYRFVTFIHRG-FSKSSSCFKNLLCYF 526 (535)
Q Consensus 459 ~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~---~~~~g~~~~~G-~~~~~~~~~~~~~~~ 526 (535)
..++.||++.++++||+.++++|++ ++++||.++..|+|++ +|||.++|+.| .+.+.+.++++.+.+
T Consensus 184 ~gfi~nrl~~a~~~EA~~L~~~g~~-s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~~~~~ 254 (495)
T PRK07531 184 DAFVGDRLLEALWREALWLVKDGIA-TTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGPCL 254 (495)
T ss_pred cchhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHhchhh
Confidence 4689999999999999999999998 9999999999998876 78888888887 445666666655443
No 308
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.01 E-value=0.0012 Score=65.83 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=51.1
Q ss_pred ceEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (535)
++|.|+|+|.+|.+++..|+..| .+|++++|+.++.+...+.+.. .+ .+....+. +.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence 57999999999999999999999 6899999999887655432210 00 01111111 4467
Q ss_pred CCCEEEEeccCC
Q 009395 226 DVDMVIEAIIEN 237 (535)
Q Consensus 226 ~aDlVI~avpe~ 237 (535)
++|+||.|+|..
T Consensus 185 ~~DivInaTp~g 196 (278)
T PRK00258 185 DFDLIINATSAG 196 (278)
T ss_pred cCCEEEECCcCC
Confidence 899999999854
No 309
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.98 E-value=0.0014 Score=66.78 Aligned_cols=100 Identities=19% Similarity=0.249 Sum_probs=62.2
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCC-------CcEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhcccc
Q 009395 148 KKVAILGG-GLMGSGIATALILSN-------YPVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLT 216 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G-------~~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~ 216 (535)
.||+|+|+ |.+|+.++..|+..+ .+|+++|+++.. ++.....+. +.. .....+.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~---------------d~~~~~~~~~~ 67 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQ---------------DCAFPLLKSVV 67 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehh---------------hccccccCCce
Confidence 47999999 999999999998855 489999996531 221000000 000 0012333
Q ss_pred cccC-cccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceeeecC
Q 009395 217 GVLD-YESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNT 262 (535)
Q Consensus 217 ~~~~-~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (535)
...+ ++++++||+||.+. |. +..+.+++...+.++.+++++++..|
T Consensus 68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (325)
T cd01336 68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG 128 (325)
T ss_pred ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 3345 47899999999876 11 22344666677888876677555444
No 310
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.94 E-value=0.0089 Score=56.51 Aligned_cols=129 Identities=21% Similarity=0.241 Sum_probs=75.3
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
++|.|||+|.+|...+..|..+|.+|++++++.. .+... .+.+.+. ...-.-..+.+.+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l-----------~~~~~i~---------~~~~~~~~~~l~~ 70 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKL-----------VEEGKIR---------WKQKEFEPSDIVD 70 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHH-----------HhCCCEE---------EEecCCChhhcCC
Confidence 6899999999999999999999999999986532 11111 1122111 0000111245789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCC--CCCCEEEEEeCCCCC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTS 304 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~--~~~~lveiv~~~~ts 304 (535)
+|+||-|+. +.++-..+.. .+..+. ++.+... |+. ..|+.|+ ..++++.-+...+.+
T Consensus 71 adlViaaT~-d~elN~~i~~----~a~~~~-lvn~~d~------------~~~---~~f~~Pa~~~~g~l~iaIsT~G~s 129 (202)
T PRK06718 71 AFLVIAATN-DPRVNEQVKE----DLPENA-LFNVITD------------AES---GNVVFPSALHRGKLTISVSTDGAS 129 (202)
T ss_pred ceEEEEcCC-CHHHHHHHHH----HHHhCC-cEEECCC------------Ccc---CeEEEeeEEEcCCeEEEEECCCCC
Confidence 999998875 4455444433 233333 3332221 111 2344554 335666666777778
Q ss_pred HHHHHHHHHHHHh
Q 009395 305 PQVIVDLLDIGKK 317 (535)
Q Consensus 305 ~e~~~~~~~l~~~ 317 (535)
|.....+++-++.
T Consensus 130 P~la~~lr~~ie~ 142 (202)
T PRK06718 130 PKLAKKIRDELEA 142 (202)
T ss_pred hHHHHHHHHHHHH
Confidence 8777766666554
No 311
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.92 E-value=0.0015 Score=61.45 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=35.9
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (535)
++|.|+|+ |.+|..++..|++.|++|++++|+.++++...+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~ 70 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD 70 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 57999996 999999999999999999999999887765543
No 312
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.91 E-value=0.0023 Score=65.26 Aligned_cols=93 Identities=13% Similarity=0.166 Sum_probs=62.2
Q ss_pred cceEEEEeCChhhHHHHHHHH-hCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395 147 VKKVAILGGGLMGSGIATALI-LSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~-~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (535)
.++|+|||+|.+|...+..++ ..++ +|.+||+++++.++..+.+...+ +. .+....++ +.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~~-----------~~~~~~~~~~~ 189 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------NT-----------EIYVVNSADEA 189 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------CC-----------cEEEeCCHHHH
Confidence 357999999999999887765 3454 89999999998876654432111 10 11223344 35
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (535)
+.++|+||.|.|... .++. ..+++++.|.+..|
T Consensus 190 ~~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs 222 (325)
T PRK08618 190 IEEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGS 222 (325)
T ss_pred HhcCCEEEEccCCCC----cchH---HhcCCCcEEEecCC
Confidence 789999999998652 3333 35678887765554
No 313
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.91 E-value=0.0055 Score=57.42 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=58.9
Q ss_pred ceEEEEeCChhhHHHHHHHHhC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395 148 KKVAILGGGLMGSGIATALILS--NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (535)
.+|++||+|.+|..+...+... .+ .|.+||++.+++..+.+. .. ....+++++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~----------------------~~-~~~~s~ide~ 57 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS----------------------VG-RRCVSDIDEL 57 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh----------------------cC-CCccccHHHH
Confidence 3799999999999998866533 24 578999999987654321 01 112355655
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 266 (535)
+.+.|+|+||.. .+..++...++.+. .-++|+.|. +.+.
T Consensus 58 ~~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~SV-GALa 96 (255)
T COG1712 58 IAEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVMSV-GALA 96 (255)
T ss_pred hhccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEEec-hhcc
Confidence 489999999985 34445554444432 335666654 3444
No 314
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.90 E-value=0.0014 Score=69.08 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=34.7
Q ss_pred ceEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHH
Q 009395 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAG 186 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~ 186 (535)
++|+|||+|.||..++..|...| .+|++++++.++.+..
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~l 220 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDL 220 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 68999999999999999999999 6899999998876543
No 315
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.90 E-value=0.0025 Score=67.21 Aligned_cols=88 Identities=23% Similarity=0.296 Sum_probs=61.6
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (535)
++|+|||.|.+|..+|..+...|.+|+++|+++.....+. ..|. . ..++ +.++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-----------~~G~-------------~-~~~leell~~ 309 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAA-----------MEGY-------------Q-VVTLEDVVET 309 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-----------hcCc-------------e-eccHHHHHhc
Confidence 6899999999999999999999999999999877643221 1121 0 1123 34688
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHhhcCCCceeeecCCcCc
Q 009395 227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTID 266 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~ 266 (535)
||+||.|.. . +.++ .+..+.++++++++ |++...
T Consensus 310 ADIVI~atG-t----~~iI~~e~~~~MKpGAiLI-NvGr~d 344 (476)
T PTZ00075 310 ADIFVTATG-N----KDIITLEHMRRMKNNAIVG-NIGHFD 344 (476)
T ss_pred CCEEEECCC-c----ccccCHHHHhccCCCcEEE-EcCCCc
Confidence 999999863 2 2344 35566688999886 455444
No 316
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.89 E-value=0.0041 Score=63.45 Aligned_cols=73 Identities=19% Similarity=0.197 Sum_probs=52.3
Q ss_pred ceEEEEeCChhhHHHHHHHH-hCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 009395 148 KKVAILGGGLMGSGIATALI-LSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~-~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (535)
++++|||+|.+|...+..++ ..++ +|++|+|++++.+...+++...+ |. .+...++++ .+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g~-----------~v~~~~~~~~av 192 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------GI-----------DVTAATDPRAAM 192 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------Cc-----------eEEEeCCHHHHh
Confidence 57999999999999999887 4675 69999999998877654432111 10 122234443 47
Q ss_pred cCCCEEEEeccCC
Q 009395 225 KDVDMVIEAIIEN 237 (535)
Q Consensus 225 ~~aDlVI~avpe~ 237 (535)
.+||+||.|+|..
T Consensus 193 ~~aDiVvtaT~s~ 205 (326)
T TIGR02992 193 SGADIIVTTTPSE 205 (326)
T ss_pred ccCCEEEEecCCC
Confidence 8999999999764
No 317
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.89 E-value=0.0033 Score=65.25 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=36.4
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (535)
+..+|.|||+|.+|...+..+...|.+|+++|+++++++.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL 206 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 34679999999999999999999999999999998876544
No 318
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.86 E-value=0.0076 Score=57.12 Aligned_cols=130 Identities=16% Similarity=0.219 Sum_probs=76.4
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
++|.|||+|.+|..-+..|++.|.+|++++.+.. .+.. ..+.|.+. .+...-..+++.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~-----------l~~~~~i~---------~~~~~~~~~dl~~ 69 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTL-----------LAEQGGIT---------WLARCFDADILEG 69 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH-----------HHHcCCEE---------EEeCCCCHHHhCC
Confidence 5899999999999999999999999999987643 1111 11222211 1111112245789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCC--CCCCEEEEEeCCCCC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTS 304 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~--~~~~lveiv~~~~ts 304 (535)
+|+||.|.. +.++-..+... +....+++.+.+.... ..|+.|+ ..++++.-+...+.+
T Consensus 70 ~~lVi~at~-d~~ln~~i~~~----a~~~~ilvn~~d~~e~---------------~~f~~pa~~~~g~l~iaisT~G~s 129 (205)
T TIGR01470 70 AFLVIAATD-DEELNRRVAHA----ARARGVPVNVVDDPEL---------------CSFIFPSIVDRSPVVVAISSGGAA 129 (205)
T ss_pred cEEEEECCC-CHHHHHHHHHH----HHHcCCEEEECCCccc---------------CeEEEeeEEEcCCEEEEEECCCCC
Confidence 999998864 55554554443 3333344432322111 2244553 345566666666778
Q ss_pred HHHHHHHHHHHHh
Q 009395 305 PQVIVDLLDIGKK 317 (535)
Q Consensus 305 ~e~~~~~~~l~~~ 317 (535)
|.....+++-++.
T Consensus 130 P~la~~lr~~ie~ 142 (205)
T TIGR01470 130 PVLARLLRERIET 142 (205)
T ss_pred cHHHHHHHHHHHH
Confidence 8776666665554
No 319
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.83 E-value=0.0058 Score=59.45 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=48.8
Q ss_pred ceEEEEeCChhhHHHHHHHHhCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395 148 KKVAILGGGLMGSGIATALILSN---YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G---~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (535)
.||+|||+|.||..++..+.+.+ ++ +.++++++++.+.... .....+++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-------------------------~~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-------------------------RVALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-------------------------cCcccCCHHH
Confidence 58999999999999999886543 44 4467887765443210 1223445665
Q ss_pred c--cCCCEEEEeccCChHHHHHHHHHHH
Q 009395 224 F--KDVDMVIEAIIENVSLKQQIFADLE 249 (535)
Q Consensus 224 ~--~~aDlVI~avpe~~~~k~~v~~~l~ 249 (535)
+ ...|+|+||.. .+..++.-..+.
T Consensus 58 ll~~~~DlVVE~A~--~~av~e~~~~iL 83 (267)
T PRK13301 58 LLAWRPDLVVEAAG--QQAIAEHAEGCL 83 (267)
T ss_pred HhhcCCCEEEECCC--HHHHHHHHHHHH
Confidence 3 68999999996 334444444433
No 320
>PLN00203 glutamyl-tRNA reductase
Probab=96.83 E-value=0.0019 Score=69.51 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=36.4
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~ 187 (535)
-++|+|||+|.||..++..|...|. +|++++++.++.+...
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La 307 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALR 307 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Confidence 4689999999999999999999997 7999999998876543
No 321
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.83 E-value=0.052 Score=52.42 Aligned_cols=106 Identities=16% Similarity=0.142 Sum_probs=74.0
Q ss_pred ccCcccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhc---CC-CCcEEeecccCCCCCCC
Q 009395 218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT---YS-KDRIVGAHFFSPAHVMP 293 (535)
Q Consensus 218 ~~~~~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~---~~-~~r~ig~h~~~P~~~~~ 293 (535)
++|.++++++|++|.-.|..-. --.+.+++.+++++++|| +||.|+|...+...+ ++ .-.+..+||-. +..++
T Consensus 133 sDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII-~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa-VPgt~ 209 (342)
T PRK00961 133 TDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIV-THACTIPTTKFAKIFKDLGRDDLNVTSYHPGA-VPEMK 209 (342)
T ss_pred cCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEE-eccccCCHHHHHHHHHHhCcccCCeeccCCCC-CCCCC
Confidence 4567889999999999986432 247888999999999987 578888877665544 32 22344455532 11122
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 294 lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~ 326 (535)
.-.++.-...++|+++.+.++.+..|+.++.+.
T Consensus 210 Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 210 GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred CceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 222333445789999999999999999999885
No 322
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.80 E-value=0.0038 Score=66.11 Aligned_cols=40 Identities=25% Similarity=0.246 Sum_probs=35.3
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 009395 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~ 186 (535)
-++|+|||+|.||..++..+...|. +|+++++++++.+..
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~l 222 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEEL 222 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHH
Confidence 3689999999999999999999997 799999999876543
No 323
>PLN02494 adenosylhomocysteinase
Probab=96.78 E-value=0.0033 Score=66.18 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=65.1
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (535)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+. ..|. ... ++ +.++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-----------~~G~-------------~vv-~leEal~~ 309 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-----------MEGY-------------QVL-TLEDVVSE 309 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-----------hcCC-------------eec-cHHHHHhh
Confidence 6899999999999999999999999999999987643322 1121 001 12 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC---cCcHHHHHhh
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGER 273 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS---~~~~~~l~~~ 273 (535)
+|+||++.... ..+..+....++++++++.... -+....|.+.
T Consensus 310 ADVVI~tTGt~----~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 310 ADIFVTTTGNK----DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred CCEEEECCCCc----cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 99999876432 1233556667899998875444 2344455443
No 324
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.74 E-value=0.0037 Score=67.10 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=51.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (535)
++++|+|+|.+|.+++..++..|++|+++|++.++.+...+.+ .....+ ..+...+.++
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~~-------------~~~~~~l~~~ 391 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAFP-------------LESLPELHRI 391 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------ccceec-------------hhHhcccCCC
Confidence 6899999999999999999999999999999988765443211 000010 1122336789
Q ss_pred CEEEEeccCCh
Q 009395 228 DMVIEAIIENV 238 (535)
Q Consensus 228 DlVI~avpe~~ 238 (535)
|+||.|+|...
T Consensus 392 DiVInatP~g~ 402 (477)
T PRK09310 392 DIIINCLPPSV 402 (477)
T ss_pred CEEEEcCCCCC
Confidence 99999998654
No 325
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.71 E-value=0.0044 Score=61.89 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=36.3
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~ 188 (535)
++|.|||+|-+|++++..|+..|. +|++++|+.++.+...+
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~ 167 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD 167 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 579999999999999999999997 69999999988766543
No 326
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.69 E-value=0.0068 Score=61.98 Aligned_cols=74 Identities=23% Similarity=0.253 Sum_probs=52.0
Q ss_pred cceEEEEeCChhhHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395 147 VKKVAILGGGLMGSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (535)
.++|+|||+|.+|...+..++. .+ .+|++|+|++++.+...+.+++.+ | + .+...+++ +.
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~a 194 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEA 194 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHH
Confidence 3589999999999998888874 45 479999999999877654432111 1 0 12223444 44
Q ss_pred ccCCCEEEEeccCC
Q 009395 224 FKDVDMVIEAIIEN 237 (535)
Q Consensus 224 ~~~aDlVI~avpe~ 237 (535)
+.+||+||.|.|..
T Consensus 195 l~~aDiVi~aT~s~ 208 (330)
T PRK08291 195 VAGADIIVTTTPSE 208 (330)
T ss_pred HccCCEEEEeeCCC
Confidence 78899999998754
No 327
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=96.68 E-value=0.088 Score=50.98 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=73.2
Q ss_pred ccCcccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhh---cCC-CCcEEeecccC-CCCCC
Q 009395 218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER---TYS-KDRIVGAHFFS-PAHVM 292 (535)
Q Consensus 218 ~~~~~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~---~~~-~~r~ig~h~~~-P~~~~ 292 (535)
++|.++++++|++|.-.|..-. --.+.+++.+.+++++|| +||.|+|...+... +++ .-.+..+||-. |-...
T Consensus 131 sDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII-~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaVPgt~~ 208 (340)
T TIGR01723 131 TDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIV-THACTIPTTKFAKIFEDLGREDLNVTSYHPGCVPEMKG 208 (340)
T ss_pred cCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEE-eccccCChHHHHHHHHhhCcccCCeeccCCCCCCCCCC
Confidence 4567889999999999986432 247788899999999987 57878877655443 332 22344455532 21112
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (535)
Q Consensus 293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~ 326 (535)
+ + ++.-...++|+++...++.+..|+.++.+.
T Consensus 209 q-~-Yi~egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 209 Q-V-YIAEGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred c-e-EeecccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 2 2 223445789999999999999999999885
No 328
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.68 E-value=0.024 Score=48.45 Aligned_cols=67 Identities=28% Similarity=0.330 Sum_probs=47.2
Q ss_pred eEEEEeCChhhHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009395 149 KVAILGGGLMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 224 (535)
||+|||+|.+|......+.+. +.+| .++|+++++.+...+. . .+...+++++ +
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~----------~-------------~~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK----------Y-------------GIPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------T-------------TSEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH----------h-------------cccchhHHHHHH
Confidence 799999999999999888777 4565 4789999887654311 1 1223445543 3
Q ss_pred --cCCCEEEEeccCCh
Q 009395 225 --KDVDMVIEAIIENV 238 (535)
Q Consensus 225 --~~aDlVI~avpe~~ 238 (535)
.+.|+|+.|+|...
T Consensus 59 ~~~~~D~V~I~tp~~~ 74 (120)
T PF01408_consen 59 ADEDVDAVIIATPPSS 74 (120)
T ss_dssp HHTTESEEEEESSGGG
T ss_pred HhhcCCEEEEecCCcc
Confidence 37899999998654
No 329
>PRK06046 alanine dehydrogenase; Validated
Probab=96.67 E-value=0.0072 Score=61.68 Aligned_cols=93 Identities=16% Similarity=0.150 Sum_probs=59.5
Q ss_pred cceEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395 147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (535)
.++|+|||+|.+|...+..+... ++ .|.+||+++++.++..+.+.+.+ +. .+...+++++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~~-----------~v~~~~~~~~~ 191 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------GC-----------DVTVAEDIEEA 191 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------Cc-----------eEEEeCCHHHH
Confidence 45899999999999999888743 44 78899999998877654432110 10 1222344443
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (535)
+. +|+|+.|.|.... +|. .+.+++++.|.+..|
T Consensus 192 l~-aDiVv~aTps~~P----~~~--~~~l~~g~hV~~iGs 224 (326)
T PRK06046 192 CD-CDILVTTTPSRKP----VVK--AEWIKEGTHINAIGA 224 (326)
T ss_pred hh-CCEEEEecCCCCc----Eec--HHHcCCCCEEEecCC
Confidence 44 9999999986432 221 124567776655444
No 330
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.65 E-value=0.025 Score=56.37 Aligned_cols=163 Identities=14% Similarity=0.175 Sum_probs=84.1
Q ss_pred cceEEEEeCChhhHHHHHHHH-hCCCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395 147 VKKVAILGGGLMGSGIATALI-LSNYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~-~~G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (535)
.-||++||+|.||+.|+.... -.|++|+. -|++.....++.++.-..-...++....+.....-..+++..|+|.+.+
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i 96 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELI 96 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhh
Confidence 357999999999999987665 45998765 5888777665543210000001111111111111122455566666543
Q ss_pred ---cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-cCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeC
Q 009395 225 ---KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-TIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300 (535)
Q Consensus 225 ---~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~ 300 (535)
...|+||++.--...--+-.+..|. ....++..|.- -+++..+-+.. .+-.|+- +..+
T Consensus 97 ~~~~~IdvIIdATG~p~vGA~~~l~Ai~---h~KHlVMmNVEaDvtIGp~Lk~~---Ad~~Gvi------------yS~~ 158 (438)
T COG4091 97 IANDLIDVIIDATGVPEVGAKIALEAIL---HGKHLVMMNVEADVTIGPILKQQ---ADAAGVI------------YSGG 158 (438)
T ss_pred hcCCcceEEEEcCCCcchhhHhHHHHHh---cCCeEEEEEeeeceeecHHHHHH---HhhcCeE------------Eecc
Confidence 4568899986221112223333333 33445544532 22222221111 0112322 2222
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395 301 NQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (535)
Q Consensus 301 ~~ts~e~~~~~~~l~~~lGk~~i~v~d 327 (535)
..-.|...-.+.+|.+++|..++..+.
T Consensus 159 ~GDeP~~~mEL~efa~a~G~evv~aGK 185 (438)
T COG4091 159 AGDEPSSCMELYEFASALGFEVVSAGK 185 (438)
T ss_pred CCCCcHHHHHHHHHHHhcCCeEEeccC
Confidence 233456667788899999999998863
No 331
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.65 E-value=0.0046 Score=56.20 Aligned_cols=38 Identities=32% Similarity=0.311 Sum_probs=35.3
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~ 185 (535)
+||+|||+ |..|+.|+.-..+.||+|+.+-||++++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence 58999999 999999999999999999999999998743
No 332
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.64 E-value=0.0057 Score=52.74 Aligned_cols=98 Identities=20% Similarity=0.199 Sum_probs=57.9
Q ss_pred eEEEEe-CChhhHHHHHHHHhCC-Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc-Ccccc
Q 009395 149 KVAILG-GGLMGSGIATALILSN-YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-DYESF 224 (535)
Q Consensus 149 kV~vIG-~G~mG~~iA~~l~~~G-~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~ 224 (535)
||+||| +|.+|+.+...|.++- ++ +.++.++.+.-.... . .... ......+.... +.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~----~----~~~~--------~~~~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLS----E----VFPH--------PKGFEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHH----H----TTGG--------GTTTEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeee----h----hccc--------cccccceeEeecchhHh
Confidence 799999 7999999999998853 35 445666552211110 0 0000 00011222222 44568
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (535)
Q Consensus 225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 267 (535)
.++|+||.|+|.. ...++...+ +..++.++++++.+..
T Consensus 65 ~~~Dvvf~a~~~~--~~~~~~~~~---~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 65 SDVDVVFLALPHG--ASKELAPKL---LKAGIKVIDLSGDFRL 102 (121)
T ss_dssp TTESEEEE-SCHH--HHHHHHHHH---HHTTSEEEESSSTTTT
T ss_pred hcCCEEEecCchh--HHHHHHHHH---hhCCcEEEeCCHHHhC
Confidence 9999999999854 344555544 4578888888887644
No 333
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.63 E-value=0.024 Score=57.23 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=28.2
Q ss_pred ceEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCH
Q 009395 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNE 180 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~ 180 (535)
.||+|||+|.||..++..+.++ +++++ ++|+++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~ 38 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG 38 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc
Confidence 5899999999999999988765 78876 579985
No 334
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.62 E-value=0.0046 Score=60.84 Aligned_cols=66 Identities=21% Similarity=0.231 Sum_probs=43.9
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395 148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (535)
.||+|+|+ |.||..++..+.+. +++++ ++|++++..... ... .+...++++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-----------~~~-------------~i~~~~dl~~l 57 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-----------GAL-------------GVAITDDLEAV 57 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-----------CCC-------------CccccCCHHHh
Confidence 58999998 99999999888764 67765 588887653211 000 1222345543
Q ss_pred ccCCCEEEEeccCC
Q 009395 224 FKDVDMVIEAIIEN 237 (535)
Q Consensus 224 ~~~aDlVI~avpe~ 237 (535)
+.++|+||++.|++
T Consensus 58 l~~~DvVid~t~p~ 71 (257)
T PRK00048 58 LADADVLIDFTTPE 71 (257)
T ss_pred ccCCCEEEECCCHH
Confidence 45799999888644
No 335
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.52 E-value=0.0047 Score=58.48 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=30.3
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~ 179 (535)
+||.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 579999999999999999999998 89999987
No 336
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.46 E-value=0.014 Score=59.08 Aligned_cols=93 Identities=15% Similarity=0.142 Sum_probs=61.7
Q ss_pred cceEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395 147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (535)
.++++|||+|.++...+..++.- . -+|.+|++++++.++..+.+++ .+. .+...++. +.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~~-----------~v~~~~~~~~a 189 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LGF-----------AVNTTLDAAEV 189 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cCC-----------cEEEECCHHHH
Confidence 45799999999999998877643 2 3899999999998766543221 110 12233444 55
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (535)
+++||+|+.|.+.... +|. .+.+++++.|....|
T Consensus 190 v~~ADIV~taT~s~~P----~~~--~~~l~~G~hi~~iGs 223 (315)
T PRK06823 190 AHAANLIVTTTPSREP----LLQ--AEDIQPGTHITAVGA 223 (315)
T ss_pred hcCCCEEEEecCCCCc----eeC--HHHcCCCcEEEecCC
Confidence 8999999999875432 232 134667876655544
No 337
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.39 E-value=0.0087 Score=58.92 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=52.8
Q ss_pred cceEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---
Q 009395 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD--- 220 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~--- 220 (535)
.+||++||.|.+-...-...... |..|..+|+++++.+.+.+-++... ... .++++. .|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~------------~L~---~~m~f~~~d~~~ 185 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL------------GLS---KRMSFITADVLD 185 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---------------HH----SSEEEEES-GGG
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc------------ccc---CCeEEEecchhc
Confidence 45999999999976654443333 4578899999999887654332111 000 122221 12
Q ss_pred c-ccccCCCEEEEec--cCChHHHHHHHHHHHhhcCCCceeeec
Q 009395 221 Y-ESFKDVDMVIEAI--IENVSLKQQIFADLEKYCPPHCILASN 261 (535)
Q Consensus 221 ~-~~~~~aDlVI~av--pe~~~~k~~v~~~l~~~~~~~~ii~s~ 261 (535)
. .++.++|+|+.|. ..+.+-|.+++..|.++++++++++.-
T Consensus 186 ~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 186 VTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp G-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 1 3468899999986 334456899999999999999987754
No 338
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.36 E-value=0.0091 Score=61.95 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=36.2
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~ 187 (535)
++|.|||+|-||.-.|.+|+.+|. .|++.+|+.++.....
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La 219 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELA 219 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 579999999999999999999995 8999999999877654
No 339
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.36 E-value=0.0069 Score=55.94 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=32.5
Q ss_pred EEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 009395 150 VAILGG-GLMGSGIATALILSNYPVILKEVNEKFLE 184 (535)
Q Consensus 150 V~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~ 184 (535)
|.|+|+ |.+|..++..|++.|++|+++-|++++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~ 36 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAE 36 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcc
Confidence 789997 99999999999999999999999998765
No 340
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.35 E-value=0.011 Score=58.75 Aligned_cols=42 Identities=24% Similarity=0.204 Sum_probs=37.6
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGR 189 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~ 189 (535)
++|.|+|+|-++++++..|++.|. ++++++|+.++.+++.+.
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~ 169 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADL 169 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 689999999999999999999995 799999999998766543
No 341
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.34 E-value=0.0094 Score=60.03 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=61.8
Q ss_pred cceEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395 147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (535)
.++++|||+|.+|...+..++.- .+ +|.+|++++++.++..+++...+ |. .+...++. +.
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~~-----------~v~~~~~~~ea 179 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------GV-----------DIRPVDNAEAA 179 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------CC-----------cEEEeCCHHHH
Confidence 46899999999999988877653 33 79999999999887665433211 10 13333444 55
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (535)
+.+||+|+.|.+.... ++. .+.+++++.|....|
T Consensus 180 v~~aDIV~taT~s~~P----~~~--~~~l~pg~hV~aiGs 213 (301)
T PRK06407 180 LRDADTITSITNSDTP----IFN--RKYLGDEYHVNLAGS 213 (301)
T ss_pred HhcCCEEEEecCCCCc----Eec--HHHcCCCceEEecCC
Confidence 8999999999875432 221 124567765554444
No 342
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.30 E-value=0.0096 Score=60.92 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=31.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (535)
++|.|||+|.+|+.+|..|++.|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 579999999999999999999998 899999985
No 343
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.29 E-value=0.013 Score=57.94 Aligned_cols=72 Identities=15% Similarity=0.279 Sum_probs=53.6
Q ss_pred ceEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
++|+|||.|. +|.++|..|.+.|..|++++.....+. +.+++
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD 201 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence 6899999987 999999999999999999987542211 23578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (535)
||+||.|++..- ++.. +.+++++++++..+
T Consensus 202 ADIVIsAvg~p~-----~i~~--~~vk~gavVIDvGi 231 (286)
T PRK14175 202 ADVIVSAVGKPG-----LVTK--DVVKEGAVIIDVGN 231 (286)
T ss_pred CCEEEECCCCCc-----ccCH--HHcCCCcEEEEcCC
Confidence 999999997432 1221 24678888876554
No 344
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.29 E-value=0.04 Score=63.87 Aligned_cols=77 Identities=22% Similarity=0.242 Sum_probs=51.8
Q ss_pred CCCcceEEEEeCChhhHHHHHHHHhC-CCc-------------EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 009395 144 PRRVKKVAILGGGLMGSGIATALILS-NYP-------------VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFE 209 (535)
Q Consensus 144 ~~~~~kV~vIG~G~mG~~iA~~l~~~-G~~-------------V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~ 209 (535)
...++||+|||+|.||..+|..|++. +++ |++.|++.+.++.+.+.. .+ ++
T Consensus 566 ~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---------~~-~~----- 630 (1042)
T PLN02819 566 TKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---------EN-AE----- 630 (1042)
T ss_pred cccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---------CC-Cc-----
Confidence 34578999999999999999999875 334 999999988876543211 01 00
Q ss_pred hhhccccc-ccCcc----cccCCCEEEEeccCChH
Q 009395 210 KTISLLTG-VLDYE----SFKDVDMVIEAIIENVS 239 (535)
Q Consensus 210 ~~~~~i~~-~~~~~----~~~~aDlVI~avpe~~~ 239 (535)
.+.. ..|.+ .++++|+||.|+|....
T Consensus 631 ----~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H 661 (1042)
T PLN02819 631 ----AVQLDVSDSESLLKYVSQVDVVISLLPASCH 661 (1042)
T ss_pred ----eEEeecCCHHHHHHhhcCCCEEEECCCchhh
Confidence 0111 12322 24679999999997543
No 345
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.24 E-value=0.041 Score=57.32 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=49.5
Q ss_pred cceEEEEeCChhhHHHH-HHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395 147 VKKVAILGGGLMGSGIA-TALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA-~~l~~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (535)
..||+|||+|..+.+-- ..++.. +.++.++|+++++++... ....+.++.-..+ -++..++|
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~----~~~~~~v~~~g~~--------~kv~~ttd 70 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIA----ILAKKLVEEAGAP--------VKVEATTD 70 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHH----HHHHHHHHhhCCC--------eEEEEecC
Confidence 45899999998876643 222222 458999999999987322 2222333321111 24666777
Q ss_pred c-ccccCCCEEEEec
Q 009395 221 Y-ESFKDVDMVIEAI 234 (535)
Q Consensus 221 ~-~~~~~aDlVI~av 234 (535)
. +++.+||+||.++
T Consensus 71 ~~eAl~gAdfVi~~~ 85 (442)
T COG1486 71 RREALEGADFVITQI 85 (442)
T ss_pred HHHHhcCCCEEEEEE
Confidence 7 5799999999887
No 346
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.23 E-value=0.011 Score=58.42 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=42.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhC-CCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc-
Q 009395 148 KKVAILGGGLMGSGIATALILS-NYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF- 224 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 224 (535)
.||+|||+|.||..++..+.+. +.++.. ++++.. .+...+. ... .+..+++++++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~--------~~~-------------~~~~~~d~~~l~ 59 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRA--------LGE-------------AVRVVSSVDALP 59 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhh--------hcc-------------CCeeeCCHHHhc
Confidence 5899999999999999998876 566543 343221 1111100 000 12334556554
Q ss_pred cCCCEEEEeccCC
Q 009395 225 KDVDMVIEAIIEN 237 (535)
Q Consensus 225 ~~aDlVI~avpe~ 237 (535)
.+.|+|++|.|..
T Consensus 60 ~~~DvVve~t~~~ 72 (265)
T PRK13303 60 QRPDLVVECAGHA 72 (265)
T ss_pred cCCCEEEECCCHH
Confidence 5689999999854
No 347
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.22 E-value=0.055 Score=48.96 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=29.1
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEV 178 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~ 178 (535)
++|.|||+|.+|...+..|...|++|++++.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 6899999999999999999999999999964
No 348
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.21 E-value=0.035 Score=53.51 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=30.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCc---EEEEeCC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYP---VILKEVN 179 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~---V~l~d~~ 179 (535)
+||.|+|+|.+|.++|..|...|.. |+++|++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 5899999999999999999999975 9999998
No 349
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.20 E-value=0.023 Score=60.97 Aligned_cols=42 Identities=19% Similarity=0.081 Sum_probs=37.9
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
+-.||.|+|+|.+|...+..+...|.+|+++|+++++++.+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae 205 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE 205 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 357999999999999999999999999999999999987664
No 350
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.20 E-value=0.014 Score=59.05 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=62.4
Q ss_pred cceEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395 147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (535)
.+.++|||+|.++......+..- + -+|.+|+++++..++...++.+.+ . ..+...++. ++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~-------~----------~~v~a~~s~~~a 192 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRG-------G----------EAVGAADSAEEA 192 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhc-------C----------ccceeccCHHHH
Confidence 45799999999999998877643 3 489999999999887765433221 1 012334444 56
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (535)
+++||+|+.|+|.+..+ +. .+.+++++-|....|
T Consensus 193 v~~aDiIvt~T~s~~Pi----l~--~~~l~~G~hI~aiGa 226 (330)
T COG2423 193 VEGADIVVTATPSTEPV----LK--AEWLKPGTHINAIGA 226 (330)
T ss_pred hhcCCEEEEecCCCCCe----ec--HhhcCCCcEEEecCC
Confidence 89999999999865422 21 234567776544333
No 351
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.19 E-value=0.047 Score=57.81 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=33.4
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~ 183 (535)
.++|.|||.|.+|.++|..|.+.|++|+++|++++.+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 4689999999999999999999999999999887643
No 352
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.18 E-value=0.0068 Score=63.68 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=35.3
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~ 187 (535)
++|.|||+|-||..++..|+..|. ++++++|+.++.+...
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La 222 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKIT 222 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 589999999999999999999996 7999999988765543
No 353
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.17 E-value=0.013 Score=59.32 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=53.1
Q ss_pred ceEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009395 148 KKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (535)
++++|||+|..+..-+..++. .++ +|.+|+|++++.++..+++++ + + -.+...++. +++
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~------~-----------~~v~~~~~~~~av 190 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L------G-----------VPVVAVDSAEEAV 190 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C------C-----------TCEEEESSHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c------c-----------ccceeccchhhhc
Confidence 479999999999998887764 344 899999999998776654322 1 1 123334455 568
Q ss_pred cCCCEEEEeccCCh--HHHHHHHHHHHhhcCCCceeeecCCc
Q 009395 225 KDVDMVIEAIIENV--SLKQQIFADLEKYCPPHCILASNTST 264 (535)
Q Consensus 225 ~~aDlVI~avpe~~--~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (535)
++||+|+.|.+... .+ +. .+.+++++.|.+..|.
T Consensus 191 ~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 191 RGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp TTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-S
T ss_pred ccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecCC
Confidence 99999999997654 22 11 2356788877655553
No 354
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.15 E-value=0.025 Score=45.46 Aligned_cols=32 Identities=38% Similarity=0.493 Sum_probs=28.6
Q ss_pred cceEEEEeCChhhHHHHHHHHhC-CCcEEEEeC
Q 009395 147 VKKVAILGGGLMGSGIATALILS-NYPVILKEV 178 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~-G~~V~l~d~ 178 (535)
-++++|+|.|.+|.+++..+... +.+|++||+
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46899999999999999999998 568889886
No 355
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.13 E-value=0.0092 Score=62.44 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=32.2
Q ss_pred EEEEeCChhhHHHHHHHHhCC-C-cEEEEeCCHHHHHHHH
Q 009395 150 VAILGGGLMGSGIATALILSN-Y-PVILKEVNEKFLEAGI 187 (535)
Q Consensus 150 V~vIG~G~mG~~iA~~l~~~G-~-~V~l~d~~~~~~~~~~ 187 (535)
|.|+|+|.+|+.++..|++.+ + +|++.|++.+++++..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~ 40 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLA 40 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence 789999999999999999987 4 8999999999987654
No 356
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.09 E-value=0.033 Score=57.06 Aligned_cols=95 Identities=12% Similarity=0.174 Sum_probs=60.1
Q ss_pred cceEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395 147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (535)
.++++|||+|..+...+..++.- . .+|.+|++++++.+...++++. .+. .+...++. +.
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~~-----------~v~~~~~~~~a 190 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PGL-----------RIVACRSVAEA 190 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cCC-----------cEEEeCCHHHH
Confidence 45799999999998887655532 3 3899999999998776554321 110 12233444 45
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (535)
+++||+|+.|.+.... ..+|. .+.+++++.|....|
T Consensus 191 v~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV~aIGs 226 (346)
T PRK07589 191 VEGADIITTVTADKTN--ATILT--DDMVEPGMHINAVGG 226 (346)
T ss_pred HhcCCEEEEecCCCCC--Cceec--HHHcCCCcEEEecCC
Confidence 8999999999974320 01111 134578876655444
No 357
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.04 E-value=0.027 Score=60.41 Aligned_cols=41 Identities=20% Similarity=0.103 Sum_probs=36.9
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
-.||.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 47999999999999999999999999999999999876554
No 358
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.04 E-value=0.085 Score=44.75 Aligned_cols=91 Identities=21% Similarity=0.216 Sum_probs=58.2
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---c--cc
Q 009395 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y--ES 223 (535)
Q Consensus 150 V~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~--~~ 223 (535)
|.|+|.|.+|..++..|.+.+.+|+++|.+++.++.+.+ .|. .-+... ++ + ..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-----------~~~----------~~i~gd~~~~~~l~~a~ 59 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-----------EGV----------EVIYGDATDPEVLERAG 59 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-----------TTS----------EEEES-TTSHHHHHHTT
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-----------ccc----------ccccccchhhhHHhhcC
Confidence 679999999999999999977799999999999876542 221 011110 11 1 13
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (535)
+.+||.||.+.+++. .-..+...+.+..+.-.+++-..
T Consensus 60 i~~a~~vv~~~~~d~-~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 60 IEKADAVVILTDDDE-ENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp GGCESEEEEESSSHH-HHHHHHHHHHHHTTTSEEEEEES
T ss_pred ccccCEEEEccCCHH-HHHHHHHHHHHHCCCCeEEEEEC
Confidence 678999999987653 33333344554455445555433
No 359
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.04 E-value=0.019 Score=63.56 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=63.9
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc--cccc
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK 225 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~ 225 (535)
.+|.|+|.|.+|..+++.|.++|++|+++|.|+++++.+++ .|.. -..+..+-.+-+ ..+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~~------v~~GDat~~~~L~~agi~ 463 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-----------YGYK------VYYGDATQLELLRAAGAE 463 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------CCCe------EEEeeCCCHHHHHhcCCc
Confidence 57999999999999999999999999999999999876542 1210 000000000011 1367
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (535)
+||.||.+++++.. -..+...+.+..++-.|++-..+
T Consensus 464 ~A~~vv~~~~d~~~-n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 464 KAEAIVITCNEPED-TMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred cCCEEEEEeCCHHH-HHHHHHHHHHHCCCCeEEEEeCC
Confidence 89999999987543 33444455555555556654333
No 360
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.03 E-value=0.008 Score=59.06 Aligned_cols=93 Identities=22% Similarity=0.253 Sum_probs=65.4
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc--cc--cCc-
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT--GV--LDY- 221 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~--~~--~~~- 221 (535)
-.||+|||.|..|..-|+...--|-+|++.|+|.+++...-. .+ . .++. .+ .++
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd----~f-----~------------~rv~~~~st~~~ie 226 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDD----LF-----G------------GRVHTLYSTPSNIE 226 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhH----hh-----C------------ceeEEEEcCHHHHH
Confidence 458999999999999999888889999999999998765321 00 0 1211 11 233
Q ss_pred ccccCCCEEEEec--cCChHHHHHHHHHHHhhcCCCceeeec
Q 009395 222 ESFKDVDMVIEAI--IENVSLKQQIFADLEKYCPPHCILASN 261 (535)
Q Consensus 222 ~~~~~aDlVI~av--pe~~~~k~~v~~~l~~~~~~~~ii~s~ 261 (535)
+.+..+|+||-+| |- .+.-+-+.++..+.++++.+|++.
T Consensus 227 e~v~~aDlvIgaVLIpg-akaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 227 EAVKKADLVIGAVLIPG-AKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred HHhhhccEEEEEEEecC-CCCceehhHHHHHhcCCCcEEEEE
Confidence 4578999999987 21 112234567777888999988754
No 361
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.00 E-value=0.018 Score=57.26 Aligned_cols=71 Identities=17% Similarity=0.314 Sum_probs=51.0
Q ss_pred ceEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
++|+|||.|. .|.+++..|.+.|..|+++++....+. +.+++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~ 202 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ 202 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence 5899999997 999999999999999999997433221 22478
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (535)
+|+||.|++.. . .+. .+.+++++++++..
T Consensus 203 aDIvI~AtG~~-~----~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 203 ADIIVGAVGKP-E----LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred CCEEEEccCCC-C----cCC--HHHcCCCCEEEEEE
Confidence 99999999522 1 111 13467787776543
No 362
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.99 E-value=0.019 Score=63.17 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=61.2
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc--cccc
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK 225 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~ 225 (535)
.+|.|+|+|.+|..+|..|.+.|++|+++|.|+++++.+.+. ...+-.|-.+.. +.+ ..++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~------------~~L~~a~i~ 480 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANE------------EIMQLAHLD 480 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCH------------HHHHhcCcc
Confidence 579999999999999999999999999999999988765421 000001111100 011 1367
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeee
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s 260 (535)
+||.||.+++++.+.. .+...+.+..+.-.|++-
T Consensus 481 ~a~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 481 CARWLLLTIPNGYEAG-EIVASAREKRPDIEIIAR 514 (558)
T ss_pred ccCEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEE
Confidence 9999999998775432 233344444444445543
No 363
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.98 E-value=0.024 Score=56.08 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=25.9
Q ss_pred ceEEEEe-CChhhHHHHHHHHh-CCCcEE-EEeCC
Q 009395 148 KKVAILG-GGLMGSGIATALIL-SNYPVI-LKEVN 179 (535)
Q Consensus 148 ~kV~vIG-~G~mG~~iA~~l~~-~G~~V~-l~d~~ 179 (535)
.||+|+| +|.||..++..+.. .+++++ ++|++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 5899999 59999999999886 477755 57743
No 364
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.93 E-value=0.024 Score=60.55 Aligned_cols=40 Identities=28% Similarity=0.320 Sum_probs=36.2
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
++|.|+|+|.+|..++..|...|++|+++|++++.++.+.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~ 40 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQ 40 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH
Confidence 4799999999999999999999999999999999876543
No 365
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.92 E-value=0.017 Score=59.15 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=31.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (535)
.||.|||+|.+|+.+|..|+++|. +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 579999999999999999999999 899999874
No 366
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.91 E-value=0.058 Score=51.50 Aligned_cols=129 Identities=22% Similarity=0.253 Sum_probs=74.1
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
++|.|||+|.++..=+..|++.|.+|+++... ++- .. ..+.|.++ .+.-.-..+++.
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el-~~-----------l~~~~~i~---------~~~r~~~~~dl~ 84 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEF-LD-----------LKKYGNLK---------LIKGNYDKEFIK 84 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHH-HH-----------HHhCCCEE---------EEeCCCChHHhC
Confidence 48999999999999899999999999999654 332 11 11222221 111011224578
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCC--CCCCEEEEEeCCCC
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQT 303 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~--~~~~lveiv~~~~t 303 (535)
++++||.|+. |.++-+.+ ...+....+++.+..... . ..|+.|+ ...+++.-+...+.
T Consensus 85 g~~LViaATd-D~~vN~~I----~~~a~~~~~lvn~vd~p~------------~---~dFi~PAiv~rg~l~IaIST~G~ 144 (223)
T PRK05562 85 DKHLIVIATD-DEKLNNKI----RKHCDRLYKLYIDCSDYK------------K---GLCIIPYQRSTKNFVFALNTKGG 144 (223)
T ss_pred CCcEEEECCC-CHHHHHHH----HHHHHHcCCeEEEcCCcc------------c---CeEEeeeEEecCCEEEEEECCCc
Confidence 9999999974 55544443 334444333433332111 0 1244554 33556666666667
Q ss_pred CHHHHHHHHHHHHh
Q 009395 304 SPQVIVDLLDIGKK 317 (535)
Q Consensus 304 s~e~~~~~~~l~~~ 317 (535)
+|.....++.-++.
T Consensus 145 sP~lar~lR~~ie~ 158 (223)
T PRK05562 145 SPKTSVFIGEKVKN 158 (223)
T ss_pred CcHHHHHHHHHHHH
Confidence 77666655555443
No 367
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.77 E-value=0.45 Score=48.29 Aligned_cols=41 Identities=27% Similarity=0.166 Sum_probs=34.2
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
=++|+|+|+|-+|..-.+.....|.+|+.+|+++++.+.++
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~ 207 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK 207 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH
Confidence 46899999998887666666668999999999999987664
No 368
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.76 E-value=0.014 Score=58.08 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=36.4
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~ 188 (535)
++|.|+|+|-.|++++..|+..|. +|+++||+.++.+...+
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 579999999999999999999997 79999999988766543
No 369
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.73 E-value=0.034 Score=54.48 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=41.9
Q ss_pred CCcceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH
Q 009395 145 RRVKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA 192 (535)
Q Consensus 145 ~~~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~ 192 (535)
+..+++.|-|+ +-+|..+|..|+++|++|+++.|+.+++++..+++++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 34567888898 9999999999999999999999999999887766554
No 370
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.71 E-value=0.02 Score=45.30 Aligned_cols=35 Identities=34% Similarity=0.597 Sum_probs=32.4
Q ss_pred eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009395 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~ 183 (535)
||+|||+|..|.-+|..+...|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987654
No 371
>PRK06153 hypothetical protein; Provisional
Probab=95.66 E-value=0.023 Score=58.30 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=29.9
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~ 179 (535)
.+|+|||+|-.|+.++..|++.|. +++++|-+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 489999999999999999999998 89999976
No 372
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.64 E-value=0.027 Score=49.98 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=29.5
Q ss_pred eEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (535)
||.|||+|.+|+.++..|++.|+ +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 799999873
No 373
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=95.62 E-value=0.013 Score=61.07 Aligned_cols=40 Identities=25% Similarity=0.435 Sum_probs=34.1
Q ss_pred ceEEEEeCChhhHHH-HHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGGGLMGSGI-ATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~G~mG~~i-A~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
+||+++|+|.||++. ...+.+.|++|+++|++++.++...
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~ 41 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALN 41 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHh
Confidence 479999999999855 7788889999999999888766554
No 374
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.60 E-value=0.058 Score=46.14 Aligned_cols=73 Identities=14% Similarity=0.192 Sum_probs=49.8
Q ss_pred ceEEEEe----CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395 148 KKVAILG----GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (535)
Q Consensus 148 ~kV~vIG----~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (535)
++|+||| -+.+|.-+...+.++|++|+.++.....+. .+....++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~-----------------------------G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL-----------------------------GIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET-----------------------------TEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC-----------------------------cEEeeccccC
Confidence 5799999 588999999999999999999987654321 1223445554
Q ss_pred c-cCCCEEEEeccCChHHHHHHHHHHHhh
Q 009395 224 F-KDVDMVIEAIIENVSLKQQIFADLEKY 251 (535)
Q Consensus 224 ~-~~aDlVI~avpe~~~~k~~v~~~l~~~ 251 (535)
. ...|+++.++| ++..-++++++.+.
T Consensus 52 ~p~~iDlavv~~~--~~~~~~~v~~~~~~ 78 (116)
T PF13380_consen 52 IPEPIDLAVVCVP--PDKVPEIVDEAAAL 78 (116)
T ss_dssp CSST-SEEEE-S---HHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcC--HHHHHHHHHHHHHc
Confidence 4 68999999997 44556777777665
No 375
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.58 E-value=0.03 Score=56.10 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=31.1
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEK 181 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~-V~l~d~~~~ 181 (535)
+++.|+|+|-+|.+++..|+..|.. |++++|+.+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 5789999999999999999999996 999999973
No 376
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.49 E-value=0.16 Score=54.65 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=33.8
Q ss_pred CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (535)
Q Consensus 145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~ 182 (535)
-..+||.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 34578999999999999999999999999999987654
No 377
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.45 E-value=0.016 Score=60.98 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=31.7
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~ 180 (535)
|.+|+|||+|.+|.++|..|++.|++|+++|+..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3589999999999999999999999999999875
No 378
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.45 E-value=0.049 Score=54.47 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=31.1
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~ 181 (535)
+++.|||+|-.+++|+..++..|. +|++++|+++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 579999999999999999999997 8999999964
No 379
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.41 E-value=0.045 Score=56.93 Aligned_cols=75 Identities=23% Similarity=0.229 Sum_probs=52.1
Q ss_pred cceEEEEeCChhhHHHHHHHHhC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009395 147 VKKVAILGGGLMGSGIATALILS--NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (535)
.++++|||+|.++......++.- .+ +|.+|++++++.+...+++...+. |. ..+...++. +
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~e 219 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIEE 219 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHHH
Confidence 46899999999999999888762 34 899999999998876544332110 10 013333444 4
Q ss_pred cccCCCEEEEeccC
Q 009395 223 SFKDVDMVIEAIIE 236 (535)
Q Consensus 223 ~~~~aDlVI~avpe 236 (535)
++++||+|+.|.+.
T Consensus 220 av~~ADIVvtaT~s 233 (379)
T PRK06199 220 VVRGSDIVTYCNSG 233 (379)
T ss_pred HHcCCCEEEEccCC
Confidence 58899999988853
No 380
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.41 E-value=0.059 Score=55.29 Aligned_cols=106 Identities=13% Similarity=0.068 Sum_probs=55.8
Q ss_pred ceEEEEeCChhhHHHHHHHHhC-CCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh-hcccccccCccc-
Q 009395 148 KKVAILGGGLMGSGIATALILS-NYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT-ISLLTGVLDYES- 223 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~~~- 223 (535)
.||+|+|+|.||..++..+... +++|+. .|.+++.......+. .++. .+... ...... -..+....+++.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~~---~~~~~-~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYPL---YVADP-EREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCCc---cccCc-cccccccCCceEEcCChhHh
Confidence 5899999999999999988754 567664 566654433222110 0000 00000 000000 011223333433
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (535)
+.++|+||+|.|.... .+... .++..++.++++++.
T Consensus 76 ~~~vDVVIdaT~~~~~--~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVG--AKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhh--HHHHH---HHHHCCCEEEEcCCC
Confidence 4689999999986533 23333 334455666666663
No 381
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.40 E-value=0.053 Score=60.31 Aligned_cols=91 Identities=19% Similarity=0.215 Sum_probs=61.3
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCc----
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY---- 221 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~---- 221 (535)
-.+|.|+|.|.+|..+++.|.++|++++++|.|+++++.+++ .|. .-+... ++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~----------~v~~GDat~~~~L~ 458 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK-----------FGM----------KVFYGDATRMDLLE 458 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------cCC----------eEEEEeCCCHHHHH
Confidence 368999999999999999999999999999999999876642 121 001010 111
Q ss_pred -ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceee
Q 009395 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (535)
Q Consensus 222 -~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~ 259 (535)
..+.++|+||.++.++.. -..+...+.+..++-.|++
T Consensus 459 ~agi~~A~~vvv~~~d~~~-n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 459 SAGAAKAEVLINAIDDPQT-SLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred hcCCCcCCEEEEEeCCHHH-HHHHHHHHHHhCCCCeEEE
Confidence 236789999999975433 3334444555444444554
No 382
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.40 E-value=0.054 Score=53.65 Aligned_cols=40 Identities=30% Similarity=0.225 Sum_probs=35.2
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~ 187 (535)
++|.|+|+|-.+++++..|+..|. +|++++|++++.+...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la 163 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA 163 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 479999999999999999999997 5999999998776543
No 383
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.36 E-value=0.11 Score=55.62 Aligned_cols=41 Identities=37% Similarity=0.421 Sum_probs=37.3
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
.++|.|+|+|.+|..++..|.+.|++|+++|.+++.++...
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~ 271 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELA 271 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence 57899999999999999999999999999999999876543
No 384
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.24 E-value=0.05 Score=56.43 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=30.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~ 179 (535)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 479999999999999999999997 89999987
No 385
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.23 E-value=0.2 Score=54.14 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=32.4
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~ 183 (535)
++|.|+|+|..|.+.+..|...|++|+++|.+++..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~ 48 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDAL 48 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 689999999999999999999999999999876543
No 386
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.22 E-value=0.044 Score=54.30 Aligned_cols=71 Identities=14% Similarity=0.266 Sum_probs=53.0
Q ss_pred ceEEEEeCChh-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395 148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (535)
Q Consensus 148 ~kV~vIG~G~m-G~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (535)
++|+|||.|.. |.++|..|.+.|..|+++.... .++ +.++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------------------------------~~l~~~~~ 200 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------------------------------RDLAAHTR 200 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------------------------------CCHHHHhh
Confidence 68999999877 9999999999999999876422 122 3368
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (535)
+||+||.+++-. . ++.. ..+++++++++...
T Consensus 201 ~ADIVV~avG~~-~----~i~~--~~ik~gavVIDVGi 231 (285)
T PRK14189 201 QADIVVAAVGKR-N----VLTA--DMVKPGATVIDVGM 231 (285)
T ss_pred hCCEEEEcCCCc-C----ccCH--HHcCCCCEEEEccc
Confidence 999999999732 2 2322 56889998876543
No 387
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.17 E-value=0.25 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.7
Q ss_pred ceEEEEeCChhhHHHHHHHHhC
Q 009395 148 KKVAILGGGLMGSGIATALILS 169 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~ 169 (535)
.+|+|+|+|.||+.++..+.++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999988765
No 388
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.16 E-value=0.037 Score=53.44 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=30.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (535)
.||.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999998 888998763
No 389
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.15 E-value=0.64 Score=46.15 Aligned_cols=85 Identities=22% Similarity=0.276 Sum_probs=56.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC---CCHHHHHh-hhcccccccCcc
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGK---MTQEKFEK-TISLLTGVLDYE 222 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~---~~~~~~~~-~~~~i~~~~~~~ 222 (535)
..|+|.|+|.+|.+.+.....+|. .++.+|+|+++.+.+.+ .|. +.+.+... ..+.|.--++
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~-----------fGaTe~iNp~d~~~~i~evi~EmTd-- 260 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE-----------FGATEFINPKDLKKPIQEVIIEMTD-- 260 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh-----------cCcceecChhhccccHHHHHHHHhc--
Confidence 579999999999999999999996 89999999999887652 232 11111111 1111111111
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHH
Q 009395 223 SFKDVDMVIEAIIENVSLKQQIFADL 248 (535)
Q Consensus 223 ~~~~aDlVI~avpe~~~~k~~v~~~l 248 (535)
.+.|+-+||+- +.+++++-|...
T Consensus 261 --gGvDysfEc~G-~~~~m~~al~s~ 283 (375)
T KOG0022|consen 261 --GGVDYSFECIG-NVSTMRAALESC 283 (375)
T ss_pred --CCceEEEEecC-CHHHHHHHHHHh
Confidence 57899999995 455555555443
No 390
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.15 E-value=0.018 Score=59.44 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=30.5
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (535)
.||.|||+|..|+.++..|+..|+ +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999998 799999874
No 391
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.13 E-value=0.13 Score=55.51 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=32.2
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 181 (535)
+.++|.|||+|..|.++|..|.+.|++|+++|.++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 346899999999999999999999999999997653
No 392
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.13 E-value=0.066 Score=51.64 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=30.4
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (535)
.+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 479999999999999999999998 899999764
No 393
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.06 E-value=0.045 Score=52.49 Aligned_cols=38 Identities=34% Similarity=0.308 Sum_probs=33.6
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~ 185 (535)
++|.|+|+ |.+|..++..+++.|++|++.+++++....
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~ 46 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQ 46 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHH
Confidence 57999987 999999999999999999999999876544
No 394
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.99 E-value=0.28 Score=46.60 Aligned_cols=130 Identities=25% Similarity=0.272 Sum_probs=79.4
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
++|.|||+|..|..=+..|++.|.+|+++..+. +.+... .+.+.+.. +.-.-+.+.+.+
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~-----------~~~~~i~~---------~~~~~~~~~~~~ 72 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKAL-----------IEEGKIKW---------IEREFDAEDLDD 72 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHH-----------HHhcCcch---------hhcccChhhhcC
Confidence 589999999999999999999999999998765 222221 22222211 111123345677
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCC--CCCEEEEEeCCCCC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQTS 304 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~--~~~lveiv~~~~ts 304 (535)
+++||.|+. |.++-+.+++...+ ..+++ |... .|.. ..|+.|.. ..++..-+...+.+
T Consensus 73 ~~lviaAt~-d~~ln~~i~~~a~~----~~i~v-Nv~D-----------~p~~---~~f~~Pa~~~r~~l~iaIsT~G~s 132 (210)
T COG1648 73 AFLVIAATD-DEELNERIAKAARE----RRILV-NVVD-----------DPEL---CDFIFPAIVDRGPLQIAISTGGKS 132 (210)
T ss_pred ceEEEEeCC-CHHHHHHHHHHHHH----hCCce-eccC-----------Cccc---CceecceeeccCCeEEEEECCCCC
Confidence 999999986 55666666554433 33443 2221 1211 34555643 35666666776777
Q ss_pred HHHHHHHHHHHHh
Q 009395 305 PQVIVDLLDIGKK 317 (535)
Q Consensus 305 ~e~~~~~~~l~~~ 317 (535)
|.....+++-+..
T Consensus 133 P~la~~ir~~Ie~ 145 (210)
T COG1648 133 PVLARLLREKIEA 145 (210)
T ss_pred hHHHHHHHHHHHH
Confidence 7776666665554
No 395
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.95 E-value=0.084 Score=46.69 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=53.5
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
++|.|+|- ...|..++..|.+.|..|++++.+...++ +.+++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~ 71 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD 71 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 58999998 56799999999999999999986432221 23678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (535)
||+||.++....-++. +.+++++++++...
T Consensus 72 ADIVvsAtg~~~~i~~-------~~ikpGa~Vidvg~ 101 (140)
T cd05212 72 ADVVVVGSPKPEKVPT-------EWIKPGATVINCSP 101 (140)
T ss_pred CCEEEEecCCCCccCH-------HHcCCCCEEEEcCC
Confidence 9999999975533333 34778998875443
No 396
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.093 Score=51.56 Aligned_cols=109 Identities=20% Similarity=0.288 Sum_probs=64.7
Q ss_pred HHhhcccCCCCCCCCCCCCCCCCcceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC
Q 009395 124 IFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGK 202 (535)
Q Consensus 124 aF~~kr~~~~~~~~~~~~~~~~~~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~ 202 (535)
+|+......|..+ +-|.|||+|-+|+-.+..|++.|. ++.++|.++-.+.....+.- .....-|.
T Consensus 62 aFfGee~m~kl~~-----------syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~---Atl~DVG~ 127 (430)
T KOG2018|consen 62 AFFGEEGMEKLTN-----------SYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSC---ATLADVGT 127 (430)
T ss_pred hhhhhhHHHHhcC-----------cEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhh---hhHhhcCC
Confidence 5666665555422 358999999999999999999998 68888988766655443210 11111111
Q ss_pred CCHHHHHhhhccccc-----------c-cCccc--ccCCCEEEEeccCChHHHHHHHHH
Q 009395 203 MTQEKFEKTISLLTG-----------V-LDYES--FKDVDMVIEAIIENVSLKQQIFAD 247 (535)
Q Consensus 203 ~~~~~~~~~~~~i~~-----------~-~~~~~--~~~aDlVI~avpe~~~~k~~v~~~ 247 (535)
-......+++..|.+ + .+-++ ..+-|+|++|+ ++.+.|.++++-
T Consensus 128 PK~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDci-DNidtKVdLL~y 185 (430)
T KOG2018|consen 128 PKVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCI-DNIDTKVDLLEY 185 (430)
T ss_pred chHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhh-hhhhhhhHHHHH
Confidence 101111111121111 1 12233 46789999999 478888887763
No 397
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.89 E-value=0.062 Score=44.87 Aligned_cols=72 Identities=28% Similarity=0.450 Sum_probs=48.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (535)
++|.|||+|.+|..=+..|++.|.+|+++..+.+..+ +.++ +. ...+ +++.+
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~~i~----------~~-~~~~~~~l~~ 60 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------GLIQ----------LI-RREFEEDLDG 60 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------TSCE----------EE-ESS-GGGCTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------hHHH----------HH-hhhHHHHHhh
Confidence 6899999999999999999999999999998851111 1110 00 1111 45888
Q ss_pred CCEEEEeccCChHHHHHHHHH
Q 009395 227 VDMVIEAIIENVSLKQQIFAD 247 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~ 247 (535)
+|+||.|.. +..+.+.+.+.
T Consensus 61 ~~lV~~at~-d~~~n~~i~~~ 80 (103)
T PF13241_consen 61 ADLVFAATD-DPELNEAIYAD 80 (103)
T ss_dssp ESEEEE-SS--HHHHHHHHHH
T ss_pred heEEEecCC-CHHHHHHHHHH
Confidence 999997764 55555555443
No 398
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.89 E-value=0.14 Score=51.25 Aligned_cols=96 Identities=20% Similarity=0.235 Sum_probs=54.3
Q ss_pred ceEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHhhhcccccccCcccc
Q 009395 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMT-QEKFEKTISLLTGVLDYESF 224 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~ 224 (535)
.||+|||+|.+|..+...+.+. ++++. ++|++++....... .+.|.-. ....+..+. ..++
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi~~~~~~ie~LL~-------~~~~ 68 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGVATSAEGIDGLLA-------MPEF 68 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCCCcccCCHHHHHh-------CcCC
Confidence 5799999999999977777654 56655 78998864321110 0122110 001111110 0124
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc
Q 009395 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (535)
Q Consensus 225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (535)
.+.|+|+++.|.... .+... .....++.++++++.
T Consensus 69 ~dIDiVf~AT~a~~H--~e~a~---~a~eaGk~VID~sPA 103 (302)
T PRK08300 69 DDIDIVFDATSAGAH--VRHAA---KLREAGIRAIDLTPA 103 (302)
T ss_pred CCCCEEEECCCHHHH--HHHHH---HHHHcCCeEEECCcc
Confidence 679999999985432 23222 234567777777764
No 399
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.86 E-value=0.054 Score=56.47 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=30.2
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~ 179 (535)
++|.|||+|..|+.++..|++.|. +++++|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 579999999999999999999998 79999987
No 400
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.84 E-value=0.13 Score=50.19 Aligned_cols=39 Identities=31% Similarity=0.361 Sum_probs=34.6
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (535)
++|.|+|+ |.+|..++..|+.+|++|++.+++++..+..
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~ 51 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT 51 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 68999987 9999999999999999999999998766543
No 401
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.83 E-value=0.071 Score=54.80 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=56.6
Q ss_pred cceEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc--
Q 009395 147 VKKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-- 222 (535)
Q Consensus 147 ~~kV~vIG~-G~mG~~iA~~l~~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-- 222 (535)
+.||+|||+ |.+|..++..+.+. +++++.+-.+.+.-+...+ .+ +.+. .. .... ..+++
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~----~~------~~~~-----~~-~~~~-~~~~~~~ 64 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSD----VH------PHLR-----GL-VDLV-LEPLDPE 64 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHH----hC------cccc-----cc-cCce-eecCCHH
Confidence 469999997 99999999999877 6776554333222111110 00 0000 00 0000 11121
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (535)
Q Consensus 223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 267 (535)
...++|+|+.|+|.... .++..++ ...++.++++++...+
T Consensus 65 ~~~~vD~Vf~alP~~~~--~~~v~~a---~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 65 ILAGADVVFLALPHGVS--MDLAPQL---LEAGVKVIDLSADFRL 104 (343)
T ss_pred HhcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCcccCC
Confidence 34679999999997532 3443333 2457888899987755
No 402
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.81 E-value=0.078 Score=52.48 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=51.8
Q ss_pred ceEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
++|+|||.| ..|.++|..|.++|..|++++.....+. +.+++
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~ 200 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN 200 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence 689999998 8999999999999999999864332221 23578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (535)
||+||.|+.-.--+. .+++++++++++..
T Consensus 201 ADIvV~AvG~p~~i~-------~~~vk~GavVIDvG 229 (285)
T PRK14191 201 ADIVCVGVGKPDLIK-------ASMVKKGAVVVDIG 229 (285)
T ss_pred CCEEEEecCCCCcCC-------HHHcCCCcEEEEee
Confidence 999999995322122 23467888887644
No 403
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.77 E-value=0.064 Score=52.14 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=31.2
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKF 182 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~ 182 (535)
.||.|+|+|.+|+.+|..|++.|. +++++|.+.-.
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 589999999999999999999997 79999987543
No 404
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.76 E-value=0.079 Score=51.20 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=29.2
Q ss_pred eEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (535)
||.|||+|..|+.++..|+..|+ +++++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999998 789999863
No 405
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=94.64 E-value=0.059 Score=48.74 Aligned_cols=74 Identities=22% Similarity=0.328 Sum_probs=47.8
Q ss_pred ceEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
++|.|||-+ ..|.+++..|.++|..|++++.....++ +.+++
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~ 79 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR 79 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence 689999996 5899999999999999999886543221 23578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 265 (535)
||+||.++...--++ .+.+++++++++.....
T Consensus 80 ADIVVsa~G~~~~i~-------~~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 80 ADIVVSAVGKPNLIK-------ADWIKPGAVVIDVGINY 111 (160)
T ss_dssp SSEEEE-SSSTT-B--------GGGS-TTEEEEE--CEE
T ss_pred ccEEeeeeccccccc-------cccccCCcEEEecCCcc
Confidence 999999996432222 23578899888665543
No 406
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.62 E-value=0.064 Score=52.83 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=30.5
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~ 181 (535)
.+|.|+|+|.+|+.+|..|++.|. +++++|.+.-
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 479999999999999999999995 8999998743
No 407
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=94.58 E-value=0.45 Score=43.98 Aligned_cols=40 Identities=30% Similarity=0.364 Sum_probs=31.7
Q ss_pred ceEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
.|++++ |+ --+|.+|+..|+++|+.|.+.|++.+..+...
T Consensus 14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata 55 (256)
T KOG1200|consen 14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATA 55 (256)
T ss_pred cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHH
Confidence 455555 55 46899999999999999999999988665543
No 408
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.58 E-value=0.081 Score=51.64 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=30.2
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (535)
.||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999997 799998763
No 409
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.56 E-value=0.079 Score=53.76 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=32.3
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL 183 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~ 183 (535)
+||.|+|+ |.+|+.++..|+++|++|++.+|+.+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 47999996 9999999999999999999999987643
No 410
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.54 E-value=0.082 Score=50.79 Aligned_cols=39 Identities=36% Similarity=0.467 Sum_probs=34.3
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (535)
++|.|+|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEA 46 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHH
Confidence 57889986 9999999999999999999999998776544
No 411
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=94.52 E-value=0.018 Score=57.17 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=28.5
Q ss_pred eEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009395 149 KVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~ 179 (535)
||.|||+|..|+.+|+.|+..|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999998 78888865
No 412
>PLN03075 nicotianamine synthase; Provisional
Probab=94.49 E-value=0.18 Score=50.22 Aligned_cols=102 Identities=18% Similarity=0.141 Sum_probs=65.8
Q ss_pred CcceEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCc-
Q 009395 146 RVKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY- 221 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~- 221 (535)
+.++|+.||+|..|-.-...++.. +-.++.+|++++.++.+++.+.. ..| + ..++++. .|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~------~~g-L--------~~rV~F~~~Da~ 187 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS------DPD-L--------SKRMFFHTADVM 187 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh------ccC-c--------cCCcEEEECchh
Confidence 347899999998876544333333 34699999999999887654321 011 1 0123221 111
Q ss_pred ---ccccCCCEEEEeccC--ChHHHHHHHHHHHhhcCCCceeeecC
Q 009395 222 ---ESFKDVDMVIEAIIE--NVSLKQQIFADLEKYCPPHCILASNT 262 (535)
Q Consensus 222 ---~~~~~aDlVI~avpe--~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (535)
....+.|+|+..+-- +..-|.++++.+.+.++++.+++.-+
T Consensus 188 ~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 188 DVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred hcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 135689999988621 22467899999999999999776555
No 413
>PRK08328 hypothetical protein; Provisional
Probab=94.42 E-value=0.047 Score=52.82 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=31.1
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKF 182 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~ 182 (535)
.+|.|||+|..|+.++..|++.|. +++++|.+.-.
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve 63 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE 63 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence 479999999999999999999998 79999977544
No 414
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.38 E-value=0.095 Score=50.87 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=28.8
Q ss_pred ceEEEEeCChhhHHHHHHHHhCC-----------CcEEEEeCCH
Q 009395 148 KKVAILGGGLMGSGIATALILSN-----------YPVILKEVNE 180 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G-----------~~V~l~d~~~ 180 (535)
.||.|||+|..|+.++..|++.| .+++++|.+.
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 58999999999999999999874 3899999763
No 415
>PRK08223 hypothetical protein; Validated
Probab=94.34 E-value=0.045 Score=54.27 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=30.2
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (535)
.+|.|||+|-+|+.++..|+++|. +++++|-+.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 479999999999999999999998 799999874
No 416
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.33 E-value=0.25 Score=53.70 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=35.4
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (535)
+.|.|.|+ |.+|..++..|++.|++|++++|+.+.++...+
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~ 122 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ 122 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 46888887 999999999999999999999999988765443
No 417
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.31 E-value=0.048 Score=57.48 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=31.4
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 181 (535)
++|+|||+|.+|.++|..|+++|++|+++|++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 3799999999999999999999999999999753
No 418
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.31 E-value=0.11 Score=50.76 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=35.2
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (535)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 42 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALK 42 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 36888887 889999999999999999999999887765543
No 419
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.23 E-value=0.12 Score=53.71 Aligned_cols=101 Identities=17% Similarity=0.263 Sum_probs=60.1
Q ss_pred CcceEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395 146 RVKKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (535)
Q Consensus 146 ~~~kV~vIG~-G~mG~~iA~~l~~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (535)
..+||+|+|+ |..|..+.+.|..+ +++|+.+..+...-+... ..... +..+.. ..+. ..+.+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~----~~~~~-l~~~~~---------~~~~-~~~~~~ 101 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFG----SVFPH-LITQDL---------PNLV-AVKDAD 101 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCch----hhCcc-ccCccc---------ccee-cCCHHH
Confidence 4569999999 99999999999988 679999877543311110 00000 000000 0000 011223
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 267 (535)
++++|+||.|+|.. .-.++... +..++.++++++..-.
T Consensus 102 ~~~~DvVf~Alp~~--~s~~i~~~----~~~g~~VIDlSs~fRl 139 (381)
T PLN02968 102 FSDVDAVFCCLPHG--TTQEIIKA----LPKDLKIVDLSADFRL 139 (381)
T ss_pred hcCCCEEEEcCCHH--HHHHHHHH----HhCCCEEEEcCchhcc
Confidence 68899999999864 33344444 3456888888886543
No 420
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.16 E-value=0.68 Score=49.41 Aligned_cols=34 Identities=35% Similarity=0.435 Sum_probs=31.9
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~ 180 (535)
-++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3689999999999999999999999999999985
No 421
>PRK07454 short chain dehydrogenase; Provisional
Probab=94.16 E-value=0.12 Score=49.89 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=34.7
Q ss_pred cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (535)
Q Consensus 147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (535)
++++.|.|+ |.+|..++..|+++|++|++.+++++..+..
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 46 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEAL 46 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 567888886 9999999999999999999999998765443
No 422
>PRK06196 oxidoreductase; Provisional
Probab=94.15 E-value=0.14 Score=51.96 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=35.8
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~ 189 (535)
++|.|.|+ |.+|..+|..|++.|++|++.+|+++..+...+.
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~ 69 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAG 69 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 56888887 8999999999999999999999998877655433
No 423
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.13 E-value=0.18 Score=48.60 Aligned_cols=32 Identities=31% Similarity=0.294 Sum_probs=29.2
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEE-EEeC
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVI-LKEV 178 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~-l~d~ 178 (535)
-++|+|.|.|.+|..+|..|...|..|+ +.|.
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 3689999999999999999999999988 7777
No 424
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.12 E-value=0.15 Score=50.42 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=54.3
Q ss_pred ceEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
++|.|||-+ ..|.++|..+...|..|+.+..+...+. +.+++
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------------------------~~~~~ 195 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------------------------AELRQ 195 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------------------------HHHhh
Confidence 589999998 8899999999999999999987654332 23578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (535)
||+||.|++-..-+.. ..+++++++++....
T Consensus 196 ADIvI~Avgk~~lv~~-------~~vk~GavVIDVgi~ 226 (279)
T PRK14178 196 ADILVSAAGKAGFITP-------DMVKPGATVIDVGIN 226 (279)
T ss_pred CCEEEECCCcccccCH-------HHcCCCcEEEEeecc
Confidence 9999999963211222 236899988765543
No 425
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.11 E-value=0.1 Score=51.65 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=52.1
Q ss_pred ceEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
++|+|||-|. .|.++|..|.+.|..|++++.....+. +.+++
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 202 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN 202 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence 6899999987 899999999999999999875422111 23678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (535)
||+||.++.-.--+.. +++++++++++..
T Consensus 203 ADIvi~avG~p~~v~~-------~~vk~gavVIDvG 231 (285)
T PRK10792 203 ADLLVVAVGKPGFIPG-------EWIKPGAIVIDVG 231 (285)
T ss_pred CCEEEEcCCCcccccH-------HHcCCCcEEEEcc
Confidence 9999999942111211 5678899887644
No 426
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.11 E-value=0.29 Score=49.97 Aligned_cols=72 Identities=22% Similarity=0.207 Sum_probs=48.1
Q ss_pred CcceEEEEeCChhh-HHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395 146 RVKKVAILGGGLMG-SGIATALILSNY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (535)
Q Consensus 146 ~~~kV~vIG~G~mG-~~iA~~l~~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (535)
++.||+|||+|.++ ...+..+...+. -|.++|+++++++...+. .|. -...+++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~----------~~~------------~~~~~~~ 59 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEE----------FGI------------AKAYTDL 59 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHH----------cCC------------CcccCCH
Confidence 35789999998555 557777777663 466889999987655421 111 0234455
Q ss_pred cc-c--cCCCEEEEeccCChH
Q 009395 222 ES-F--KDVDMVIEAIIENVS 239 (535)
Q Consensus 222 ~~-~--~~aDlVI~avpe~~~ 239 (535)
++ + .+.|+|+.|+|.+..
T Consensus 60 ~~ll~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 60 EELLADPDIDAVYIATPNALH 80 (342)
T ss_pred HHHhcCCCCCEEEEcCCChhh
Confidence 54 3 347999999997765
No 427
>PRK07062 short chain dehydrogenase; Provisional
Probab=94.11 E-value=0.13 Score=50.53 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=34.7
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (535)
+.+.|.|+ |.+|..++..|++.|++|++.+++++.++...+
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEA 50 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 45777777 789999999999999999999999887765543
No 428
>PRK08267 short chain dehydrogenase; Provisional
Probab=94.11 E-value=0.088 Score=51.49 Aligned_cols=40 Identities=25% Similarity=0.245 Sum_probs=34.9
Q ss_pred cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (535)
Q Consensus 147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (535)
+++|.|+|+ |.+|..++..|++.|++|++++++++.++..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 41 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAAL 41 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 357889986 9999999999999999999999998876554
No 429
>PRK05868 hypothetical protein; Validated
Probab=94.10 E-value=0.049 Score=56.68 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=32.9
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~ 182 (535)
|++|.|||+|..|...|..|+++|++|+++|+.++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 468999999999999999999999999999987653
No 430
>PRK07825 short chain dehydrogenase; Provisional
Probab=94.10 E-value=0.15 Score=50.34 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=35.0
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
++|.|.|+ |.+|..++..|+++|++|++.+++++.++...
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 57888887 99999999999999999999999998876543
No 431
>PRK07774 short chain dehydrogenase; Provisional
Probab=94.10 E-value=0.12 Score=50.10 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=34.2
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (535)
++|.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57889987 9999999999999999999999998765443
No 432
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.06 E-value=0.46 Score=48.97 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=34.6
Q ss_pred eEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~ 187 (535)
+|+|+|+|.||...+..+...|. +|++.|+++++++.+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~ 210 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAK 210 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHH
Confidence 79999999999998888888885 7888899999998775
No 433
>PRK07831 short chain dehydrogenase; Provisional
Probab=94.06 E-value=0.14 Score=50.26 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=36.3
Q ss_pred cceEEEEeC-C-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395 147 VKKVAILGG-G-LMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (535)
Q Consensus 147 ~~kV~vIG~-G-~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~ 189 (535)
-+++.|.|+ | .+|.+++..|+..|++|++.+++++.++...+.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~ 61 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADE 61 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 467999997 6 599999999999999999999998877665443
No 434
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.03 E-value=0.13 Score=51.52 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=35.2
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~ 81 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVA 81 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 57888887 99999999999999999999999988776544
No 435
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.01 E-value=0.17 Score=48.39 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=30.0
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (535)
-++|+|.|.|++|+.+|..|.+.|. .|.+.|.+.
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 3689999999999999999999988 566788876
No 436
>PRK07877 hypothetical protein; Provisional
Probab=94.00 E-value=0.075 Score=59.54 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=28.7
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNE 180 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~ 180 (535)
.||+|||+| +|+.+|..|++.|. +++++|.+.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence 579999999 89999999999995 899999863
No 437
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.99 E-value=0.066 Score=54.61 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=29.8
Q ss_pred eEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~ 179 (535)
.|+|||+|..|.++|..|++.|++|+++|++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999998
No 438
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=93.98 E-value=0.32 Score=46.51 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=31.9
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLE 184 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~ 184 (535)
.+|+|+|.|-+|+-.+..|++.|+ +++++|.+.=.+.
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vT 68 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVT 68 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccccc
Confidence 579999999999999999999998 7899988754433
No 439
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=93.93 E-value=0.13 Score=52.91 Aligned_cols=99 Identities=21% Similarity=0.213 Sum_probs=57.1
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCccc
Q 009395 148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYES 223 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 223 (535)
+||+|||+ |.+|..+++.|.+. +++++ +++.+...-+... ..+ +.+.. . ..+... .+.++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~----~~~------~~l~~-----~-~~~~~~~~~~~~ 64 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVS----EVH------PHLRG-----L-VDLNLEPIDEEE 64 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChH----HhC------ccccc-----c-CCceeecCCHHH
Confidence 47999998 99999999999877 66877 5565542211111 000 10000 0 000111 12223
Q ss_pred c-cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (535)
Q Consensus 224 ~-~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 267 (535)
+ .++|+||.|+|.... .++..++. ..++.++++++..-+
T Consensus 65 ~~~~~DvVf~alP~~~s--~~~~~~~~---~~G~~VIDlS~~fR~ 104 (346)
T TIGR01850 65 IAEDADVVFLALPHGVS--AELAPELL---AAGVKVIDLSADFRL 104 (346)
T ss_pred hhcCCCEEEECCCchHH--HHHHHHHH---hCCCEEEeCChhhhc
Confidence 3 589999999996532 34444432 457888888886544
No 440
>PRK07890 short chain dehydrogenase; Provisional
Probab=93.92 E-value=0.11 Score=50.64 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=34.6
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
++|.|.|+ |.+|..+|..|++.|++|++.+++++..+...
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 46 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVA 46 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 56888886 89999999999999999999999987765543
No 441
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=93.91 E-value=0.029 Score=61.13 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=29.6
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~ 179 (535)
.||.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 589999999999999999999998 78999875
No 442
>PRK06194 hypothetical protein; Provisional
Probab=93.89 E-value=0.15 Score=50.68 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=34.6
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
++|.|.|+ |.+|..++..|++.|++|+++|++.+.++...
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAV 47 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 57888876 89999999999999999999999987765543
No 443
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.87 E-value=0.12 Score=50.39 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=34.9
Q ss_pred cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (535)
Q Consensus 147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (535)
-++|.|+|+ |.+|..++..+++.|++|++.++++...+..
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~ 47 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAA 47 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 367999988 9999999999999999999999998765543
No 444
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.85 E-value=0.071 Score=46.81 Aligned_cols=32 Identities=34% Similarity=0.499 Sum_probs=29.4
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~ 179 (535)
+||+|+|+|.+|+.+|..|++.|. +++++|.+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 589999999999999999999998 79999976
No 445
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.84 E-value=0.37 Score=46.25 Aligned_cols=39 Identities=31% Similarity=0.294 Sum_probs=34.6
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (535)
++|.|.|+ |.+|..+++.+++.|++|++.+++++..+..
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRM 45 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57899987 8899999999999999999999998876544
No 446
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.83 E-value=0.084 Score=40.39 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=27.0
Q ss_pred EEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395 152 ILGGGLMGSGIATALILSNYPVILKEVNEK 181 (535)
Q Consensus 152 vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 181 (535)
|||+|.-|.+.|..|.++|++|+++|.++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999998754
No 447
>PLN00016 RNA-binding protein; Provisional
Probab=93.82 E-value=0.14 Score=53.35 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=33.1
Q ss_pred CcceEEEE----eC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395 146 RVKKVAIL----GG-GLMGSGIATALILSNYPVILKEVNEKF 182 (535)
Q Consensus 146 ~~~kV~vI----G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~ 182 (535)
..+||.|+ |+ |.+|+.++..|+++|++|++++++++.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 34789999 76 999999999999999999999998764
No 448
>PRK07832 short chain dehydrogenase; Provisional
Probab=93.81 E-value=0.18 Score=49.72 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=34.1
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
+++.|+|+ |.+|..++..|++.|++|++++++++.++...
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~ 41 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTV 41 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36888876 99999999999999999999999987765443
No 449
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.78 E-value=0.27 Score=52.73 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=32.0
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 181 (535)
.+||+|+|.|..|.++|..|.+.|++|+++|.++.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 35899999999999999999999999999998753
No 450
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.78 E-value=0.18 Score=49.14 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=36.7
Q ss_pred cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (535)
Q Consensus 147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~ 189 (535)
.++|.|.|+ |.+|..++..|+++|++|++.+++++..+...+.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~ 50 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADE 50 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Confidence 357888888 9999999999999999999999999876655433
No 451
>PRK07236 hypothetical protein; Provisional
Probab=93.78 E-value=0.071 Score=55.71 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=33.1
Q ss_pred CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (535)
Q Consensus 146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 181 (535)
+..+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 457899999999999999999999999999998764
No 452
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=93.77 E-value=0.14 Score=49.77 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=34.0
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (535)
++|.|+|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 40 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQEL 40 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 46888986 9999999999999999999999998876543
No 453
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=93.74 E-value=0.27 Score=48.91 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=52.1
Q ss_pred ceEEEEeCChhhHHHHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009395 148 KKVAILGGGLMGSGIATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 224 (535)
.||+|||+|.||..++..+.+ .++++. ++|+++++...... .+.|. -...++++. +
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A---------~~~Gi------------~~~~~~~e~ll 60 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA---------RELGV------------KTSAEGVDGLL 60 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH---------HHCCC------------CEEECCHHHHh
Confidence 379999999999988776664 456655 67888875321110 01221 011223333 2
Q ss_pred --cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395 225 --KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (535)
Q Consensus 225 --~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (535)
.+.|+|++|.|..... +.. ...+..+..++++++
T Consensus 61 ~~~dIDaV~iaTp~~~H~--e~a---~~al~aGk~VIdekP 96 (285)
T TIGR03215 61 ANPDIDIVFDATSAKAHA--RHA---RLLAELGKIVIDLTP 96 (285)
T ss_pred cCCCCCEEEECCCcHHHH--HHH---HHHHHcCCEEEECCc
Confidence 4689999999866432 222 223345665555554
No 454
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.74 E-value=0.34 Score=45.07 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=57.6
Q ss_pred ceEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc--cC----
Q 009395 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV--LD---- 220 (535)
Q Consensus 148 ~kV~vIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~---- 220 (535)
++|+|||-+ ..|.++|..|.++|..|+++|.+.-..-. ..+.+ +-+.+ .+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~----------~hs~t~~~~~~~~ 119 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI----------RHEKHHVTDEEAM 119 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc----------ccccccccchhhH
Confidence 689999985 56999999999999999999876433200 00000 00001 12
Q ss_pred c-ccccCCCEEEEeccCChH-HHHHHHHHHHhhcCCCceeeecCCcCc
Q 009395 221 Y-ESFKDVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTID 266 (535)
Q Consensus 221 ~-~~~~~aDlVI~avpe~~~-~k~~v~~~l~~~~~~~~ii~s~tS~~~ 266 (535)
+ +.+++||+||.|++..-- ++. +.+++++++++......
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~~-------d~ik~GavVIDVGi~~d 160 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVPT-------ELLKDGAICINFASIKN 160 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccCH-------HHcCCCcEEEEcCCCcC
Confidence 2 347899999999974322 233 35678999887665543
No 455
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=93.72 E-value=0.081 Score=49.79 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=30.2
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (535)
.||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 579999999999999999999998 699999763
No 456
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.72 E-value=0.18 Score=48.98 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=35.3
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
++|.|.|+ |.+|..++..|++.|++|++++++++..+...
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 45 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAA 45 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 57999986 99999999999999999999999988766543
No 457
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.70 E-value=0.06 Score=54.85 Aligned_cols=33 Identities=33% Similarity=0.375 Sum_probs=29.2
Q ss_pred eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 181 (535)
+|+|||+|.-|..+|..|+++|++|+++|+++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 699999999999999999999999999999755
No 458
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.70 E-value=0.072 Score=55.75 Aligned_cols=34 Identities=35% Similarity=0.401 Sum_probs=32.1
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 181 (535)
.+|.|||+|..|...|..|+++|++|+++|++++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 5799999999999999999999999999999865
No 459
>PRK09186 flagellin modification protein A; Provisional
Probab=93.68 E-value=0.18 Score=49.05 Aligned_cols=40 Identities=28% Similarity=0.482 Sum_probs=34.9
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~ 45 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELL 45 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHH
Confidence 57888887 89999999999999999999999988776544
No 460
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.63 E-value=0.4 Score=51.34 Aligned_cols=129 Identities=20% Similarity=0.288 Sum_probs=77.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (535)
++|.|||+|.++..=+..|+..|.+|+++... ++- .. ..+.|.+. .+.-.-..+++.
T Consensus 13 ~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~-~~-----------l~~~~~i~---------~~~~~~~~~dl~ 71 (457)
T PRK10637 13 RDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQF-TA-----------WADAGMLT---------LVEGPFDESLLD 71 (457)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHH-HH-----------HHhCCCEE---------EEeCCCChHHhC
Confidence 68999999999999899999999999998543 321 11 11222221 010011224588
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCC--CCCCEEEEEeCCCC
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQT 303 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~--~~~~lveiv~~~~t 303 (535)
++++||.|+. |.++-+. |...+....+++.+.. -+ + ...|+.|. ..++++.-+...+.
T Consensus 72 ~~~lv~~at~-d~~~n~~----i~~~a~~~~~lvN~~d-~~-----------~---~~~f~~pa~~~~g~l~iaisT~G~ 131 (457)
T PRK10637 72 TCWLAIAATD-DDAVNQR----VSEAAEARRIFCNVVD-AP-----------K---AASFIMPSIIDRSPLMVAVSSGGT 131 (457)
T ss_pred CCEEEEECCC-CHHHhHH----HHHHHHHcCcEEEECC-Cc-----------c---cCeEEEeeEEecCCEEEEEECCCC
Confidence 9999998875 4444444 4444444445543332 11 1 12345553 34667777777778
Q ss_pred CHHHHHHHHHHHHh
Q 009395 304 SPQVIVDLLDIGKK 317 (535)
Q Consensus 304 s~e~~~~~~~l~~~ 317 (535)
+|.....+++-++.
T Consensus 132 sP~~a~~lr~~ie~ 145 (457)
T PRK10637 132 SPVLARLLREKLES 145 (457)
T ss_pred CcHHHHHHHHHHHH
Confidence 88777777666655
No 461
>PRK08643 acetoin reductase; Validated
Probab=93.62 E-value=0.15 Score=49.64 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=33.7
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
+++.|+|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAA 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 35677776 89999999999999999999999987765543
No 462
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.57 E-value=0.08 Score=54.92 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=30.2
Q ss_pred eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~ 180 (535)
.|+|||+|.+|.++|..|++.|++|+++|+..
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 59999999999999999999999999999864
No 463
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.56 E-value=0.17 Score=50.08 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=52.0
Q ss_pred ceEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (535)
Q Consensus 148 ~kV~vIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (535)
++|+|||-+. .|.++|..|.+.|..|++++.... ++ +.++
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~--------------------------------------~l~~~~~ 206 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD--------------------------------------DLKKYTL 206 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC--------------------------------------CHHHHHh
Confidence 6899999987 899999999999999999884322 22 2357
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (535)
Q Consensus 226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (535)
+||+||.|+--.--+. .+.+++++++++..+
T Consensus 207 ~ADIvv~AvG~p~~i~-------~~~vk~gavVIDvGi 237 (287)
T PRK14176 207 DADILVVATGVKHLIK-------ADMVKEGAVIFDVGI 237 (287)
T ss_pred hCCEEEEccCCccccC-------HHHcCCCcEEEEecc
Confidence 8999999874211111 236788998877554
No 464
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.50 E-value=0.16 Score=49.08 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=34.9
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
++|.|+|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELA 48 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 67889887 99999999999999999999999988766543
No 465
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=93.50 E-value=0.17 Score=50.42 Aligned_cols=100 Identities=17% Similarity=0.083 Sum_probs=68.2
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (535)
++++|+|.|.+|+..|.++-.-|..|+.||.- +..... ..| +...+-.+.+..
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~-------------a~g-------------vq~vsl~Eil~~ 200 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAE-------------AFG-------------VQLVSLEEILPK 200 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHH-------------hcc-------------ceeeeHHHHHhh
Confidence 68999999999999999998889999999863 332211 112 112222245789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-c--CcHHHHHhhc
Q 009395 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERT 274 (535)
Q Consensus 227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~ 274 (535)
||+|-.-+|-.++.++-+-.+....++++.-++ |+| + +....+-+.+
T Consensus 201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI-N~aRGGvVDe~ALv~Al 250 (406)
T KOG0068|consen 201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRII-NVARGGVVDEPALVRAL 250 (406)
T ss_pred cCEEEEccCCCcchhhccCHHHHHHhhCCcEEE-EecCCceechHHHHHHH
Confidence 999999998877776655566667788888654 444 2 3344454444
No 466
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.49 E-value=0.08 Score=55.27 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=31.8
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 181 (535)
...|.|||+|..|.+.|..|+++|++|+++|+++.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 34799999999999999999999999999998753
No 467
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.47 E-value=0.61 Score=49.74 Aligned_cols=34 Identities=26% Similarity=0.172 Sum_probs=31.4
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 181 (535)
++|.|+|.|.+|.++|..|++.|++|+++|.+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 5799999999999999999999999999998754
No 468
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=93.46 E-value=0.13 Score=50.19 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=34.8
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
++|.|.|+ |.+|..+|..|+++|++|++.+++.+..+...
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 47 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAA 47 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 46888886 99999999999999999999999988766543
No 469
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.45 E-value=0.15 Score=49.31 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=33.9
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (535)
++|.|.|+ |.+|..++..|+++|++|++.+++++.....
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~ 46 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAAT 46 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57889985 9999999999999999999999998765443
No 470
>PRK06753 hypothetical protein; Provisional
Probab=93.44 E-value=0.08 Score=54.91 Aligned_cols=34 Identities=35% Similarity=0.373 Sum_probs=31.8
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 181 (535)
++|.|||+|.-|.+.|..|+++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4799999999999999999999999999998865
No 471
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=93.40 E-value=1.7 Score=43.87 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=36.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~ 187 (535)
.+|+|+|+|-+|.+-.+.+..+|. .++.+|+++++++.++
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~ 227 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK 227 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH
Confidence 579999999999999999999987 6888999999988775
No 472
>PRK07063 short chain dehydrogenase; Provisional
Probab=93.40 E-value=0.16 Score=49.62 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=34.9
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (535)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++...+
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~ 49 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAA 49 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46777776 899999999999999999999999887765543
No 473
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.39 E-value=0.29 Score=44.79 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=31.1
Q ss_pred CCCcceEEEEeCChhhHHHHH-HHH-hCCCcE-EEEeCCHHHH
Q 009395 144 PRRVKKVAILGGGLMGSGIAT-ALI-LSNYPV-ILKEVNEKFL 183 (535)
Q Consensus 144 ~~~~~kV~vIG~G~mG~~iA~-~l~-~~G~~V-~l~d~~~~~~ 183 (535)
..++.+|.|||+|++|.+++. .+. ++|+++ -++|.+++.+
T Consensus 81 ~~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V 123 (211)
T COG2344 81 QDKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV 123 (211)
T ss_pred CCcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHh
Confidence 345789999999999999985 333 567764 5789999865
No 474
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.36 E-value=0.33 Score=51.33 Aligned_cols=98 Identities=14% Similarity=0.055 Sum_probs=61.0
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhC---CC----cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 009395 148 KKVAILGG-GLMGSGIATALILS---NY----PVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~---G~----~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (535)
-+|+|-|+ |.+|-++...+++- |. .++++|+ +.+.++...-.+++..- ..+..+..
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~--------------pll~~v~i 189 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAF--------------PLLRGISV 189 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHH--------------hhcCCcEE
Confidence 57999988 99999999888864 42 5788999 56665544333332211 11112222
Q ss_pred -ccCcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCC-Cceee
Q 009395 218 -VLDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPP-HCILA 259 (535)
Q Consensus 218 -~~~~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~-~~ii~ 259 (535)
+.+++++++||+||.+. |. +..+.+.+...|.++.++ ..|++
T Consensus 190 ~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlV 247 (452)
T cd05295 190 TTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIV 247 (452)
T ss_pred EECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 45678899999999875 21 333455666677777763 33444
No 475
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.35 E-value=0.05 Score=51.13 Aligned_cols=48 Identities=23% Similarity=0.285 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhh
Q 009395 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFI 508 (535)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~ 508 (535)
.+.+||+..+++||.-+++..|+. +..|+|.+|-.|+|.+---.|++.
T Consensus 189 Gf~lnriq~Ailne~wrLvasGil-~v~dvD~VmS~GLG~RYAflG~lE 236 (313)
T KOG2305|consen 189 GFALNRIQYAILNETWRLVASGIL-NVNDVDAVMSAGLGPRYAFLGPLE 236 (313)
T ss_pred cceeccccHHHHHHHHHHHHccCc-chhhHHHHHhcCCCcchhcccchh
Confidence 379999999999999999999998 899999999999998865555554
No 476
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=93.33 E-value=0.8 Score=43.63 Aligned_cols=98 Identities=19% Similarity=0.103 Sum_probs=57.8
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH----HHH-hhhccccc-ccCc
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE----KFE-KTISLLTG-VLDY 221 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~----~~~-~~~~~i~~-~~~~ 221 (535)
.+|.++|+|. +.-|..|+++|++|+.+|+++..++.+.+. .+..... ... ..-.+++. ..|+
T Consensus 36 ~rvLd~GCG~--G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~D~ 103 (213)
T TIGR03840 36 ARVFVPLCGK--SLDLAWLAEQGHRVLGVELSEIAVEQFFAE----------NGLTPTVTQQGEFTRYRAGNIEIFCGDF 103 (213)
T ss_pred CeEEEeCCCc--hhHHHHHHhCCCeEEEEeCCHHHHHHHHHH----------cCCCcceeccccceeeecCceEEEEccC
Confidence 3799999998 355677899999999999999999865321 1110000 000 00011211 1122
Q ss_pred cc-----ccCCCEEEEec---cCChHHHHHHHHHHHhhcCCCce
Q 009395 222 ES-----FKDVDMVIEAI---IENVSLKQQIFADLEKYCPPHCI 257 (535)
Q Consensus 222 ~~-----~~~aDlVI~av---pe~~~~k~~v~~~l~~~~~~~~i 257 (535)
.. ...-|.|+++. .-++......++.+...++++..
T Consensus 104 ~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 104 FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR 147 (213)
T ss_pred CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence 11 22358888753 11345567788899999998763
No 477
>PRK08251 short chain dehydrogenase; Provisional
Probab=93.30 E-value=0.22 Score=48.16 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=34.2
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
++|.|.|+ |.+|..++..|+++|++|++.+++++..+...
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELK 43 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 46778875 99999999999999999999999988765543
No 478
>PRK05854 short chain dehydrogenase; Provisional
Probab=93.28 E-value=0.33 Score=49.18 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=36.1
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i 190 (535)
+++.|.|+ +.+|..+|..|++.|++|++.+|+.+..+.+.+.+
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l 58 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAI 58 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 56777776 88999999999999999999999998877665444
No 479
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=93.26 E-value=0.089 Score=54.66 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=29.3
Q ss_pred eEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~ 179 (535)
.|+|||+|.+|.++|..|+++|++|+++|..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~ 32 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF 32 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4899999999999999999999999999985
No 480
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=93.25 E-value=0.24 Score=49.96 Aligned_cols=88 Identities=24% Similarity=0.197 Sum_probs=59.9
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (535)
+++.|.|.|-.|.++|..+...|..|++++++|-..-++. ++.....+--++...+
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~------------------------MdGf~V~~m~~Aa~~g 265 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAA------------------------MDGFRVMTMEEAAKTG 265 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHh------------------------hcCcEEEEhHHhhhcC
Confidence 5788889999999999999999999999999986532221 1222223323557788
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc
Q 009395 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (535)
Q Consensus 228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (535)
|++|.|.-..--+. .+-...+++++|++ |...
T Consensus 266 DifiT~TGnkdVi~----~eh~~~MkDgaIl~-N~GH 297 (420)
T COG0499 266 DIFVTATGNKDVIR----KEHFEKMKDGAILA-NAGH 297 (420)
T ss_pred CEEEEccCCcCccC----HHHHHhccCCeEEe-cccc
Confidence 99999885432222 23344578888775 5543
No 481
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.25 E-value=0.47 Score=47.83 Aligned_cols=146 Identities=22% Similarity=0.295 Sum_probs=77.3
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (535)
.+|+|+|+ |..|.-+...|....++ +.++-.....=++. .+.+.- ...-.....+..+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~-----------~~f~~~-------~~~v~~~~~~~~~ 63 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKY-----------IEFGGK-------SIGVPEDAADEFV 63 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcc-----------ccccCc-------cccCccccccccc
Confidence 58999988 99999999999987653 33333222211100 001000 0000011134455
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCC----CEEEEEe
Q 009395 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVM----PLLEIVR 299 (535)
Q Consensus 224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~----~lveiv~ 299 (535)
.+++|+|+.|.+.+.. +++..++. ..++++++|+|....+. +--+-+-..||-+.. +- .++.
T Consensus 64 ~~~~Divf~~ag~~~s--~~~~p~~~---~~G~~VIdnsSa~Rm~~--------DVPLVVPeVN~~~l~~~~~rg-~Iia 129 (334)
T COG0136 64 FSDVDIVFFAAGGSVS--KEVEPKAA---EAGCVVIDNSSAFRMDP--------DVPLVVPEVNPEHLIDYQKRG-FIIA 129 (334)
T ss_pred cccCCEEEEeCchHHH--HHHHHHHH---HcCCEEEeCCcccccCC--------CCCEecCCcCHHHHHhhhhCC-CEEE
Confidence 7799999999986543 45555443 46799999999764431 111111122332110 11 3555
Q ss_pred CCCCCH-HHHHHHHHHHHhcCCceEEe
Q 009395 300 TNQTSP-QVIVDLLDIGKKIKKTPIVV 325 (535)
Q Consensus 300 ~~~ts~-e~~~~~~~l~~~lGk~~i~v 325 (535)
+++++- ..+-.+.++.+..|-.-+.+
T Consensus 130 npNCst~~l~~aL~PL~~~~~i~~v~V 156 (334)
T COG0136 130 NPNCSTIQLVLALKPLHDAFGIKRVVV 156 (334)
T ss_pred CCChHHHHHHHHHHHHHhhcCceEEEE
Confidence 555543 33455666777666444433
No 482
>PRK06847 hypothetical protein; Provisional
Probab=93.24 E-value=0.089 Score=54.58 Aligned_cols=35 Identities=43% Similarity=0.545 Sum_probs=32.4
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 181 (535)
+++|+|||+|.-|...|..|.+.|++|++++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 56899999999999999999999999999998754
No 483
>PRK05650 short chain dehydrogenase; Provisional
Probab=93.21 E-value=0.22 Score=49.06 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=34.5
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
++|.|+|+ |.+|..++..|++.|++|++.+++.+.++...
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 41 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETL 41 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36888886 99999999999999999999999988766544
No 484
>PRK07478 short chain dehydrogenase; Provisional
Probab=93.20 E-value=0.25 Score=48.07 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=34.5
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
+++.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 47 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLV 47 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46778876 89999999999999999999999988766544
No 485
>PRK07074 short chain dehydrogenase; Provisional
Probab=93.18 E-value=0.15 Score=49.64 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=34.4
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
++|.|.|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~ 43 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFA 43 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46888887 89999999999999999999999988765443
No 486
>PRK05867 short chain dehydrogenase; Provisional
Probab=93.16 E-value=0.2 Score=48.74 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=34.5
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
+++.|.|+ |.+|..++..|++.|++|++.+++.+.++...
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 50 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLA 50 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 46778887 89999999999999999999999988766543
No 487
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=93.15 E-value=0.22 Score=49.26 Aligned_cols=39 Identities=31% Similarity=0.428 Sum_probs=33.6
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (535)
+++.|.|+ |.+|..++..|++.|++|++++++.+..+..
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 50 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAV 50 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 56778887 8999999999999999999999998766543
No 488
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=93.13 E-value=0.22 Score=52.38 Aligned_cols=32 Identities=19% Similarity=0.476 Sum_probs=29.5
Q ss_pred eEEEEeCChhhHHHHHHHHhCCC------cEEEEeCCH
Q 009395 149 KVAILGGGLMGSGIATALILSNY------PVILKEVNE 180 (535)
Q Consensus 149 kV~vIG~G~mG~~iA~~l~~~G~------~V~l~d~~~ 180 (535)
||.|||+|.+|+.++..|+..|+ +++++|.+.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~ 38 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDN 38 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCC
Confidence 58999999999999999999998 899999764
No 489
>PRK09242 tropinone reductase; Provisional
Probab=93.08 E-value=0.22 Score=48.52 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=34.5
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (535)
+++.|+|+ |.+|..++..|++.|++|++.+++.+.++...
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 50 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQAR 50 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 56888886 89999999999999999999999988765543
No 490
>PRK07024 short chain dehydrogenase; Provisional
Probab=93.07 E-value=0.18 Score=49.29 Aligned_cols=39 Identities=23% Similarity=0.149 Sum_probs=33.7
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (535)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~ 42 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAF 42 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46888875 9999999999999999999999998776543
No 491
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.03 E-value=0.093 Score=59.04 Aligned_cols=33 Identities=39% Similarity=0.689 Sum_probs=31.0
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~ 180 (535)
.+|+|||+|.+|.++|..|++.|++|+++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 479999999999999999999999999999874
No 492
>PRK11579 putative oxidoreductase; Provisional
Probab=93.03 E-value=0.51 Score=48.55 Aligned_cols=67 Identities=13% Similarity=0.215 Sum_probs=43.4
Q ss_pred ceEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395 148 KKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (535)
Q Consensus 148 ~kV~vIG~G~mG~~-iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (535)
.||+|||+|.||.. .+..+... +++++ ++|+++++... +.+ .....+++++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~~~------------~~~~~~~~~el 59 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA-------------DWP------------TVTVVSEPQHL 59 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh-------------hCC------------CCceeCCHHHH
Confidence 58999999999984 45555543 67765 68998765321 001 1123445544
Q ss_pred c--cCCCEEEEeccCChH
Q 009395 224 F--KDVDMVIEAIIENVS 239 (535)
Q Consensus 224 ~--~~aDlVI~avpe~~~ 239 (535)
+ .+.|+|+.|+|....
T Consensus 60 l~~~~vD~V~I~tp~~~H 77 (346)
T PRK11579 60 FNDPNIDLIVIPTPNDTH 77 (346)
T ss_pred hcCCCCCEEEEcCCcHHH
Confidence 3 468999999997654
No 493
>PRK08374 homoserine dehydrogenase; Provisional
Probab=92.99 E-value=0.44 Score=48.77 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=19.0
Q ss_pred ceEEEEeCChhhHHHHHHHHh
Q 009395 148 KKVAILGGGLMGSGIATALIL 168 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~ 168 (535)
.+|+|+|.|++|+.++..+.+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 489999999999999998876
No 494
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.98 E-value=0.17 Score=49.39 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=29.1
Q ss_pred ceEEEEeCC---hhhHHHHHHHHhCCCcEEEEeCCH
Q 009395 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNE 180 (535)
Q Consensus 148 ~kV~vIG~G---~mG~~iA~~l~~~G~~V~l~d~~~ 180 (535)
+++.|.|++ .+|.++|..|++.|++|++.+++.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~ 43 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND 43 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch
Confidence 567788885 799999999999999999999884
No 495
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=92.97 E-value=0.11 Score=53.99 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=32.1
Q ss_pred cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 181 (535)
..+|+|||+|.+|.+.|..|++.|.+|+++|....
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 46899999999999999999999999999998754
No 496
>PRK07109 short chain dehydrogenase; Provisional
Probab=92.93 E-value=0.29 Score=50.12 Aligned_cols=42 Identities=29% Similarity=0.241 Sum_probs=35.9
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~ 189 (535)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~ 51 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAE 51 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 56888887 8999999999999999999999998877655443
No 497
>PRK08265 short chain dehydrogenase; Provisional
Probab=92.90 E-value=0.17 Score=49.61 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=33.9
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (535)
+++.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 46 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAV 46 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 56788887 9999999999999999999999998766544
No 498
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.86 E-value=0.32 Score=52.16 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=31.9
Q ss_pred cceEEEEeCChhhHH-HHHHHHhCCCcEEEEeCCHH
Q 009395 147 VKKVAILGGGLMGSG-IATALILSNYPVILKEVNEK 181 (535)
Q Consensus 147 ~~kV~vIG~G~mG~~-iA~~l~~~G~~V~l~d~~~~ 181 (535)
.++|.|||.|..|.+ +|+.|.+.|++|+++|.++.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 468999999999999 79999999999999998754
No 499
>PRK06139 short chain dehydrogenase; Provisional
Probab=92.84 E-value=0.27 Score=50.25 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=36.4
Q ss_pred ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (535)
Q Consensus 148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~ 189 (535)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~ 50 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEE 50 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 56888888 8999999999999999999999999887765543
No 500
>PRK07588 hypothetical protein; Provisional
Probab=92.80 E-value=0.11 Score=54.39 Aligned_cols=34 Identities=32% Similarity=0.272 Sum_probs=31.4
Q ss_pred ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (535)
Q Consensus 148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 181 (535)
++|.|||+|..|.+.|..|+++|++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 3799999999999999999999999999998754
Done!