BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009396
         (535 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BVI|F Chain F, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
           (Part 2)
 pdb|2BVI|G Chain G, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
           (Part 2)
 pdb|2BVI|H Chain H, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
           (Part 2)
 pdb|2BVI|I Chain I, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
           (Part 2)
 pdb|2BVI|J Chain J, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
           (Part 2)
 pdb|2BVI|K Chain K, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
           (Part 2)
 pdb|2BVI|L Chain L, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
           (Part 2)
 pdb|2BVI|M Chain M, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
           (Part 2)
 pdb|2BVI|N Chain N, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
           (Part 2)
 pdb|2BVI|O Chain O, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
           (Part 2)
 pdb|2BVI|P Chain P, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
           (Part 2)
 pdb|2BVI|Q Chain Q, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
           (Part 2)
 pdb|1P30|A Chain A, Refinement Of Adenovirus Type 5 Hexon With Cns
 pdb|3TG7|A Chain A, Crystal Structure Of Adenovirus Serotype 5 Hexon At 1.6a
           Resolution
          Length = 951

 Score = 33.1 bits (74), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 60/158 (37%), Gaps = 6/158 (3%)

Query: 129 TPSKHIISMEREKEGASSESKPERGRQVRKNLAFEEDRSLGKKMAPST-----PGGVRTA 183
           TP  HI  M   KEG S E   ++    R N     D  +G     ST       G  + 
Sbjct: 294 TPDTHISYMPTIKEGNSRELMGQQSMPNRPNYIAFRDNFIGLMYYNSTGNMGVLAGQASQ 353

Query: 184 SSGVIDICDSDDEPDVPHLLSIFGDKNIYISTDHPAEGTVGSDRETTPNESPKRAFFKYS 243
            + V+D+ D + E     LL   GD+  Y S  + A  +   D     N   +     Y 
Sbjct: 354 LNAVVDLQDRNTELSYQLLLDSIGDRTRYFSMWNQAVDSYDPDVRIIENHGTEDELPNYC 413

Query: 244 YEENVETCNDSVPVVTPKRKQASNIVTSDTE-SDEDDV 280
           +        +++  V PK  Q +      TE SD++++
Sbjct: 414 FPLGGVINTETLTKVKPKTGQENGWEKDATEFSDKNEI 451


>pdb|3IYN|A Chain A, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
 pdb|3IYN|B Chain B, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
 pdb|3IYN|C Chain C, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
 pdb|3IYN|D Chain D, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
 pdb|3IYN|E Chain E, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
 pdb|3IYN|F Chain F, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
 pdb|3IYN|G Chain G, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
 pdb|3IYN|H Chain H, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
 pdb|3IYN|I Chain I, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
 pdb|3IYN|J Chain J, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
 pdb|3IYN|K Chain K, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
 pdb|3IYN|L Chain L, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
 pdb|1VSZ|A Chain A, Crystal Structure Of Human Adenovirus At 3.5a
 pdb|1VSZ|B Chain B, Crystal Structure Of Human Adenovirus At 3.5a
 pdb|1VSZ|C Chain C, Crystal Structure Of Human Adenovirus At 3.5a
 pdb|1VSZ|D Chain D, Crystal Structure Of Human Adenovirus At 3.5a
 pdb|1VSZ|E Chain E, Crystal Structure Of Human Adenovirus At 3.5a
 pdb|1VSZ|F Chain F, Crystal Structure Of Human Adenovirus At 3.5a
 pdb|1VSZ|G Chain G, Crystal Structure Of Human Adenovirus At 3.5a
 pdb|1VSZ|H Chain H, Crystal Structure Of Human Adenovirus At 3.5a
 pdb|1VSZ|I Chain I, Crystal Structure Of Human Adenovirus At 3.5a
 pdb|1VSZ|J Chain J, Crystal Structure Of Human Adenovirus At 3.5a
 pdb|1VSZ|K Chain K, Crystal Structure Of Human Adenovirus At 3.5a
 pdb|1VSZ|L Chain L, Crystal Structure Of Human Adenovirus At 3.5a
          Length = 952

 Score = 33.1 bits (74), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 60/158 (37%), Gaps = 6/158 (3%)

Query: 129 TPSKHIISMEREKEGASSESKPERGRQVRKNLAFEEDRSLGKKMAPST-----PGGVRTA 183
           TP  HI  M   KEG S E   ++    R N     D  +G     ST       G  + 
Sbjct: 295 TPDTHISYMPTIKEGNSRELMGQQSMPNRPNYIAFRDNFIGLMYYNSTGNMGVLAGQASQ 354

Query: 184 SSGVIDICDSDDEPDVPHLLSIFGDKNIYISTDHPAEGTVGSDRETTPNESPKRAFFKYS 243
            + V+D+ D + E     LL   GD+  Y S  + A  +   D     N   +     Y 
Sbjct: 355 LNAVVDLQDRNTELSYQLLLDSIGDRTRYFSMWNQAVDSYDPDVRIIENHGTEDELPNYC 414

Query: 244 YEENVETCNDSVPVVTPKRKQASNIVTSDTE-SDEDDV 280
           +        +++  V PK  Q +      TE SD++++
Sbjct: 415 FPLGGVINTETLTKVKPKTGQENGWEKDATEFSDKNEI 452


>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
           Thetaiotaomicron
          Length = 612

 Score = 30.4 bits (67), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 23/45 (51%)

Query: 481 AEFLTDGDPQGELKKSVKELREYDPKGLELCRTFASRYSKQLFDI 525
           AE+   G P   LKK   +LRE DP   E  + F +   KQL D+
Sbjct: 102 AEWEXGGLPWWLLKKKDIKLREQDPYYXERVKLFLNEVGKQLADL 146


>pdb|1EH4|A Chain A, Binary Complex Of Casein Kinase-1 From S. Pombe With An
           Atp Competitive Inhibitor, Ic261
 pdb|1EH4|B Chain B, Binary Complex Of Casein Kinase-1 From S. Pombe With An
           Atp Competitive Inhibitor, Ic261
 pdb|1CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Mgatp
          Length = 298

 Score = 28.5 bits (62), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 406 FDEILSRLNRTKDQNSEWEL 425
           F ++L RLN T+D+N +W L
Sbjct: 278 FSKVLERLNTTEDENFDWNL 297


>pdb|2CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Cki7
          Length = 297

 Score = 28.5 bits (62), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 406 FDEILSRLNRTKDQNSEWEL 425
           F ++L RLN T+D+N +W L
Sbjct: 277 FSKVLERLNTTEDENFDWNL 296


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.130    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,019,999
Number of Sequences: 62578
Number of extensions: 502085
Number of successful extensions: 792
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 787
Number of HSP's gapped (non-prelim): 6
length of query: 535
length of database: 14,973,337
effective HSP length: 103
effective length of query: 432
effective length of database: 8,527,803
effective search space: 3684010896
effective search space used: 3684010896
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)