Query 009396
Match_columns 535
No_of_seqs 26 out of 28
Neff 2.3
Searched_HMMs 46136
Date Thu Mar 28 12:36:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2433 Uncharacterized conser 95.0 0.084 1.8E-06 58.5 8.4 102 20-132 420-523 (652)
2 PF12718 Tropomyosin_1: Tropom 94.2 0.11 2.5E-06 47.3 6.0 106 17-122 16-139 (143)
3 COG4026 Uncharacterized protei 91.5 0.36 7.8E-06 48.9 5.6 73 33-120 132-206 (290)
4 PRK04778 septation ring format 90.8 0.55 1.2E-05 50.5 6.7 43 96-138 408-451 (569)
5 PF08614 ATG16: Autophagy prot 89.3 0.51 1.1E-05 44.2 4.3 97 14-117 87-187 (194)
6 PF06005 DUF904: Protein of un 88.2 1.2 2.5E-05 37.3 5.2 29 38-66 6-34 (72)
7 PF09726 Macoilin: Transmembra 87.9 1.9 4E-05 48.5 8.2 60 6-65 457-517 (697)
8 PF00261 Tropomyosin: Tropomyo 85.3 3.7 8.1E-05 39.6 7.8 105 15-119 113-225 (237)
9 PF06160 EzrA: Septation ring 82.9 3 6.5E-05 45.2 6.6 92 19-138 355-447 (560)
10 PF07888 CALCOCO1: Calcium bin 82.7 3.9 8.5E-05 45.3 7.4 34 28-61 142-175 (546)
11 PF00769 ERM: Ezrin/radixin/mo 82.1 4.2 9.1E-05 40.1 6.8 98 19-116 9-114 (246)
12 PF04111 APG6: Autophagy prote 82.1 5.4 0.00012 40.6 7.8 90 22-125 43-133 (314)
13 PF14193 DUF4315: Domain of un 80.0 3 6.4E-05 36.0 4.3 35 23-57 2-36 (83)
14 PRK13729 conjugal transfer pil 79.8 2.6 5.7E-05 45.9 4.9 48 19-66 73-120 (475)
15 PRK15422 septal ring assembly 78.6 5.9 0.00013 34.4 5.7 66 38-117 6-72 (79)
16 PF11365 DUF3166: Protein of u 76.9 19 0.00042 32.0 8.6 86 24-118 3-89 (96)
17 PF06005 DUF904: Protein of un 76.7 9.4 0.0002 32.0 6.3 46 19-64 8-53 (72)
18 KOG4196 bZIP transcription fac 76.6 3.8 8.3E-05 38.5 4.3 58 39-132 71-130 (135)
19 PF05667 DUF812: Protein of un 76.0 6.5 0.00014 43.7 6.6 108 18-125 331-481 (594)
20 PF13870 DUF4201: Domain of un 75.5 18 0.00039 33.3 8.4 91 21-122 83-176 (177)
21 COG1579 Zn-ribbon protein, pos 72.7 14 0.0003 37.3 7.4 58 20-77 29-87 (239)
22 PF07888 CALCOCO1: Calcium bin 72.4 14 0.00031 41.1 8.1 53 16-68 165-217 (546)
23 PF10481 CENP-F_N: Cenp-F N-te 71.6 7.6 0.00017 40.4 5.4 66 16-81 75-142 (307)
24 PRK13729 conjugal transfer pil 69.1 9.3 0.0002 41.9 5.7 50 16-65 77-126 (475)
25 PF14632 SPT6_acidic: Acidic N 68.5 2.4 5.2E-05 37.2 1.0 9 376-384 19-27 (92)
26 PF12718 Tropomyosin_1: Tropom 68.5 13 0.00028 34.2 5.7 85 24-108 2-96 (143)
27 PRK03918 chromosome segregatio 68.0 21 0.00045 39.5 8.2 46 20-65 191-236 (880)
28 PF09789 DUF2353: Uncharacteri 67.6 18 0.00039 37.9 7.2 84 25-117 129-225 (319)
29 PF08317 Spc7: Spc7 kinetochor 67.2 22 0.00049 36.0 7.7 17 104-120 274-291 (325)
30 PF07716 bZIP_2: Basic region 66.7 12 0.00025 28.9 4.3 33 32-64 21-53 (54)
31 PF08614 ATG16: Autophagy prot 66.1 17 0.00036 34.3 6.1 51 19-69 127-177 (194)
32 TIGR00606 rad50 rad50. This fa 66.0 15 0.00032 43.6 6.9 55 16-70 745-812 (1311)
33 PF10473 CENP-F_leu_zip: Leuci 65.9 37 0.0008 31.8 8.2 51 19-69 21-85 (140)
34 KOG2189 Vacuolar H+-ATPase V0 64.6 11 0.00024 43.6 5.4 27 10-36 51-77 (829)
35 PF11559 ADIP: Afadin- and alp 64.5 26 0.00057 31.4 6.8 93 17-115 54-150 (151)
36 PF00261 Tropomyosin: Tropomyo 64.5 12 0.00027 36.1 5.0 51 20-70 90-140 (237)
37 TIGR02168 SMC_prok_B chromosom 63.8 30 0.00064 38.5 8.3 32 90-121 871-903 (1179)
38 PRK02224 chromosome segregatio 62.7 25 0.00055 39.1 7.7 47 16-62 538-584 (880)
39 COG3074 Uncharacterized protei 62.6 25 0.00053 30.6 5.9 65 38-117 6-72 (79)
40 PF10805 DUF2730: Protein of u 62.2 14 0.00031 32.3 4.6 45 21-65 48-94 (106)
41 PF02183 HALZ: Homeobox associ 61.9 20 0.00043 27.8 4.7 39 27-65 3-41 (45)
42 TIGR02169 SMC_prok_A chromosom 61.0 31 0.00068 38.6 8.0 45 21-65 797-841 (1164)
43 PF05377 FlaC_arch: Flagella a 60.8 20 0.00042 29.4 4.8 40 23-62 1-40 (55)
44 PF12325 TMF_TATA_bd: TATA ele 60.5 38 0.00083 30.9 7.1 42 26-67 20-61 (120)
45 PF11559 ADIP: Afadin- and alp 60.5 25 0.00054 31.5 5.9 38 32-69 48-85 (151)
46 PF04111 APG6: Autophagy prote 60.2 22 0.00047 36.4 6.2 52 17-68 45-96 (314)
47 smart00338 BRLZ basic region l 58.7 23 0.0005 27.9 4.8 38 22-59 26-63 (65)
48 TIGR02169 SMC_prok_A chromosom 58.1 16 0.00035 40.8 5.2 8 187-194 527-534 (1164)
49 PF00170 bZIP_1: bZIP transcri 58.0 22 0.00048 28.0 4.6 35 32-66 22-56 (64)
50 PF00170 bZIP_1: bZIP transcri 57.7 20 0.00043 28.3 4.3 31 19-49 30-60 (64)
51 PF10805 DUF2730: Protein of u 57.2 20 0.00044 31.4 4.7 62 20-96 40-103 (106)
52 PRK11637 AmiB activator; Provi 57.1 41 0.00088 35.0 7.6 48 19-66 44-91 (428)
53 PF00038 Filament: Intermediat 56.7 35 0.00075 33.4 6.7 76 21-117 17-94 (312)
54 PF10234 Cluap1: Clusterin-ass 56.2 23 0.00051 36.2 5.5 47 16-62 184-237 (267)
55 TIGR03185 DNA_S_dndD DNA sulfu 55.6 66 0.0014 35.4 9.2 89 20-132 207-296 (650)
56 COG4026 Uncharacterized protei 53.8 22 0.00048 36.6 4.9 38 25-62 152-189 (290)
57 PF05911 DUF869: Plant protein 53.6 31 0.00067 39.9 6.5 112 18-140 88-222 (769)
58 PRK10698 phage shock protein P 53.1 16 0.00035 35.6 3.8 47 19-66 170-217 (222)
59 PRK02224 chromosome segregatio 52.8 32 0.00068 38.4 6.3 20 20-39 480-499 (880)
60 PF13851 GAS: Growth-arrest sp 52.6 32 0.00069 33.2 5.6 40 21-60 92-131 (201)
61 KOG3779 Homeobox transcription 51.9 8.7 0.00019 42.6 1.9 55 355-414 258-312 (737)
62 PF08826 DMPK_coil: DMPK coile 51.1 42 0.00092 27.7 5.3 43 25-67 14-56 (61)
63 PF06657 Cep57_MT_bd: Centroso 50.9 38 0.00083 28.7 5.2 54 16-69 11-69 (79)
64 PF12709 Kinetocho_Slk19: Cent 50.7 27 0.00059 30.8 4.4 35 20-54 47-81 (87)
65 PF02403 Seryl_tRNA_N: Seryl-t 50.6 63 0.0014 27.4 6.5 41 26-66 26-66 (108)
66 PF05911 DUF869: Plant protein 49.4 62 0.0014 37.5 8.1 87 18-121 592-689 (769)
67 PF10211 Ax_dynein_light: Axon 49.1 46 0.001 31.8 6.0 51 19-69 131-182 (189)
68 COG1196 Smc Chromosome segrega 49.0 55 0.0012 38.6 7.7 9 187-195 1036-1044(1163)
69 PF01920 Prefoldin_2: Prefoldi 48.9 35 0.00075 28.1 4.6 30 21-50 68-97 (106)
70 KOG4674 Uncharacterized conser 48.2 31 0.00068 43.3 5.8 95 15-118 1243-1341(1822)
71 PRK10884 SH3 domain-containing 48.1 48 0.001 32.5 6.1 14 22-35 93-106 (206)
72 PRK05431 seryl-tRNA synthetase 47.7 69 0.0015 34.0 7.6 85 30-132 29-114 (425)
73 PRK04863 mukB cell division pr 47.6 33 0.00072 42.1 5.9 89 21-109 375-473 (1486)
74 PRK03992 proteasome-activating 47.4 34 0.00073 35.4 5.2 43 25-67 4-46 (389)
75 PF00038 Filament: Intermediat 47.2 51 0.0011 32.2 6.2 45 23-67 263-307 (312)
76 PF12240 Angiomotin_C: Angiomo 47.2 19 0.00042 35.9 3.3 35 11-45 132-166 (205)
77 PF04102 SlyX: SlyX; InterPro 45.9 77 0.0017 25.9 6.1 47 20-66 2-48 (69)
78 TIGR02977 phageshock_pspA phag 45.4 31 0.00067 33.1 4.3 45 20-65 171-216 (219)
79 KOG0161 Myosin class II heavy 45.3 30 0.00065 43.6 5.1 50 15-64 936-985 (1930)
80 PF03962 Mnd1: Mnd1 family; I 44.5 67 0.0015 30.8 6.4 94 21-124 68-168 (188)
81 COG2433 Uncharacterized conser 44.4 38 0.00082 38.6 5.3 69 31-125 417-487 (652)
82 PF10446 DUF2457: Protein of u 43.8 17 0.00036 39.9 2.5 8 401-408 104-111 (458)
83 PLN02678 seryl-tRNA synthetase 43.8 85 0.0018 34.1 7.7 85 29-131 33-118 (448)
84 PHA02562 46 endonuclease subun 43.8 85 0.0019 32.9 7.5 26 21-46 298-323 (562)
85 PF07106 TBPIP: Tat binding pr 43.7 86 0.0019 28.7 6.7 10 100-109 146-155 (169)
86 TIGR02894 DNA_bind_RsfA transc 43.0 60 0.0013 31.4 5.8 44 23-66 105-148 (161)
87 PTZ00454 26S protease regulato 42.7 49 0.0011 34.8 5.6 45 20-64 20-64 (398)
88 COG4477 EzrA Negative regulato 42.7 68 0.0015 36.2 6.8 88 20-135 359-447 (570)
89 PF05700 BCAS2: Breast carcino 42.3 1.7E+02 0.0036 28.5 8.7 35 84-118 181-216 (221)
90 PF14739 DUF4472: Domain of un 42.1 47 0.001 30.2 4.7 52 18-69 38-89 (108)
91 PF12001 DUF3496: Domain of un 42.0 74 0.0016 29.1 5.9 18 19-36 4-21 (111)
92 KOG2077 JNK/SAPK-associated pr 41.9 1E+02 0.0022 35.6 8.0 36 152-187 517-558 (832)
93 KOG0999 Microtubule-associated 41.5 88 0.0019 35.9 7.5 32 87-118 136-176 (772)
94 PF06156 DUF972: Protein of un 41.3 86 0.0019 28.1 6.1 51 19-69 5-55 (107)
95 cd00632 Prefoldin_beta Prefold 40.9 53 0.0012 28.1 4.6 31 20-50 68-98 (105)
96 PRK02119 hypothetical protein; 40.9 1E+02 0.0022 25.8 6.1 48 19-66 6-53 (73)
97 PF06698 DUF1192: Protein of u 40.5 53 0.0012 27.1 4.3 24 17-40 23-46 (59)
98 PF07716 bZIP_2: Basic region 40.2 60 0.0013 25.0 4.4 31 21-51 24-54 (54)
99 PF09304 Cortex-I_coil: Cortex 40.0 20 0.00044 32.6 2.1 84 18-108 12-100 (107)
100 PRK00888 ftsB cell division pr 39.6 66 0.0014 28.3 5.1 32 19-50 31-62 (105)
101 TIGR02338 gimC_beta prefoldin, 39.4 55 0.0012 28.4 4.5 32 20-51 72-103 (110)
102 KOG0250 DNA repair protein RAD 39.3 73 0.0016 38.4 6.8 103 21-125 294-421 (1074)
103 PRK02793 phi X174 lysis protei 38.2 1.2E+02 0.0026 25.3 6.1 48 19-66 5-52 (72)
104 TIGR00606 rad50 rad50. This fa 38.2 66 0.0014 38.4 6.3 51 19-69 885-935 (1311)
105 smart00338 BRLZ basic region l 38.0 63 0.0014 25.5 4.3 36 32-67 22-57 (65)
106 PF13815 Dzip-like_N: Iguana/D 37.7 80 0.0017 27.9 5.4 37 30-66 81-117 (118)
107 PRK03992 proteasome-activating 37.5 58 0.0013 33.7 5.2 51 18-68 4-54 (389)
108 PRK04406 hypothetical protein; 37.5 1.2E+02 0.0026 25.6 6.1 48 19-66 8-55 (75)
109 PF04977 DivIC: Septum formati 37.3 63 0.0014 25.3 4.2 34 31-64 19-52 (80)
110 PRK10884 SH3 domain-containing 37.0 2E+02 0.0043 28.3 8.3 23 90-112 137-159 (206)
111 PRK01156 chromosome segregatio 36.9 2E+02 0.0043 32.6 9.4 51 38-90 418-470 (895)
112 KOG0946 ER-Golgi vesicle-tethe 36.8 89 0.0019 37.1 6.8 51 17-67 659-716 (970)
113 PF08317 Spc7: Spc7 kinetochor 35.8 89 0.0019 31.8 6.1 28 21-48 215-242 (325)
114 PRK01156 chromosome segregatio 35.6 60 0.0013 36.6 5.3 33 16-48 581-613 (895)
115 PRK11637 AmiB activator; Provi 35.6 86 0.0019 32.7 6.0 42 21-62 74-115 (428)
116 PF15397 DUF4618: Domain of un 35.2 1.1E+02 0.0023 31.5 6.5 111 15-125 81-220 (258)
117 PRK13169 DNA replication intia 35.2 1.2E+02 0.0026 27.5 6.1 50 19-68 5-54 (110)
118 KOG1189 Global transcriptional 34.9 29 0.00063 40.6 2.7 18 393-410 920-937 (960)
119 KOG0161 Myosin class II heavy 34.8 84 0.0018 40.0 6.6 100 21-125 844-956 (1930)
120 PF13851 GAS: Growth-arrest sp 34.7 58 0.0013 31.4 4.3 29 87-115 102-131 (201)
121 PF04859 DUF641: Plant protein 34.2 66 0.0014 30.0 4.4 36 21-56 93-128 (131)
122 PF10779 XhlA: Haemolysin XhlA 33.6 1.5E+02 0.0033 24.2 6.0 47 19-65 3-49 (71)
123 PF08581 Tup_N: Tup N-terminal 33.1 1.6E+02 0.0035 25.3 6.3 49 16-67 26-74 (79)
124 PRK03918 chromosome segregatio 32.9 1.9E+02 0.0042 32.2 8.5 53 29-81 391-443 (880)
125 PF10152 DUF2360: Predicted co 32.6 47 0.001 30.7 3.2 35 13-47 12-46 (148)
126 PF13846 DUF4196: Domain of un 32.6 33 0.0007 31.7 2.1 43 242-289 44-87 (112)
127 PRK13923 putative spore coat p 32.5 79 0.0017 30.8 4.8 44 27-70 109-152 (170)
128 PF09755 DUF2046: Uncharacteri 32.4 60 0.0013 34.2 4.3 38 22-59 84-129 (310)
129 cd00584 Prefoldin_alpha Prefol 31.9 2.1E+02 0.0046 24.9 7.0 78 27-104 4-88 (129)
130 KOG4005 Transcription factor X 31.2 90 0.002 32.5 5.2 39 182-220 198-236 (292)
131 KOG0971 Microtubule-associated 31.1 1.8E+02 0.0039 35.2 8.1 42 20-61 1006-1051(1243)
132 KOG0804 Cytoplasmic Zn-finger 31.1 1.6E+02 0.0034 33.0 7.2 16 108-123 412-428 (493)
133 TIGR02449 conserved hypothetic 30.2 1.8E+02 0.0039 24.5 5.9 42 19-60 4-45 (65)
134 PF12777 MT: Microtubule-bindi 30.1 1.2E+02 0.0026 31.1 5.9 21 105-125 290-311 (344)
135 KOG0995 Centromere-associated 29.6 1.5E+02 0.0032 33.8 6.9 38 83-120 330-368 (581)
136 PF13815 Dzip-like_N: Iguana/D 29.5 91 0.002 27.5 4.4 40 21-60 79-118 (118)
137 PF13747 DUF4164: Domain of un 29.3 78 0.0017 27.4 3.8 30 40-69 36-65 (89)
138 PRK00295 hypothetical protein; 29.2 2E+02 0.0043 23.7 6.0 45 20-64 3-47 (68)
139 PF11932 DUF3450: Protein of u 29.1 1.3E+02 0.0027 29.4 5.7 43 25-67 52-94 (251)
140 PHA02562 46 endonuclease subun 28.9 2.6E+02 0.0055 29.5 8.2 27 87-113 381-407 (562)
141 PF09730 BicD: Microtubule-ass 28.9 2.3E+02 0.0049 33.0 8.3 32 94-125 354-386 (717)
142 KOG4005 Transcription factor X 28.6 1.8E+02 0.004 30.4 6.8 38 32-69 86-123 (292)
143 PF04325 DUF465: Protein of un 28.6 1.4E+02 0.003 22.8 4.7 45 20-64 4-48 (49)
144 PRK09343 prefoldin subunit bet 28.5 1E+02 0.0022 27.6 4.5 33 19-51 75-107 (121)
145 PF05266 DUF724: Protein of un 28.0 1.8E+02 0.004 28.2 6.5 21 99-119 159-180 (190)
146 TIGR03185 DNA_S_dndD DNA sulfu 27.8 80 0.0017 34.8 4.5 26 39-64 431-456 (650)
147 COG1196 Smc Chromosome segrega 27.8 1.8E+02 0.0039 34.5 7.5 37 89-125 888-925 (1163)
148 KOG4643 Uncharacterized coiled 27.7 62 0.0013 39.0 3.8 69 34-102 262-339 (1195)
149 PRK00888 ftsB cell division pr 27.7 1E+02 0.0022 27.2 4.3 34 31-64 29-62 (105)
150 PRK04325 hypothetical protein; 27.5 2.2E+02 0.0049 23.8 6.1 46 19-64 6-51 (74)
151 KOG4421 Uncharacterized conser 27.4 1.2E+02 0.0027 33.5 5.7 52 98-149 56-111 (637)
152 KOG0996 Structural maintenance 27.4 1.1E+02 0.0023 37.6 5.6 43 83-125 933-976 (1293)
153 PF09726 Macoilin: Transmembra 27.4 64 0.0014 36.8 3.7 96 26-121 457-575 (697)
154 PF04642 DUF601: Protein of un 27.0 35 0.00077 35.6 1.6 58 21-78 216-281 (311)
155 TIGR01242 26Sp45 26S proteasom 26.9 72 0.0016 32.2 3.7 38 27-64 4-41 (364)
156 PF03962 Mnd1: Mnd1 family; I 26.9 1.7E+02 0.0038 28.1 6.0 67 31-112 64-130 (188)
157 PF08243 SPT2: SPT2 chromatin 26.8 35 0.00076 30.9 1.3 12 373-384 24-35 (116)
158 KOG2264 Exostosin EXT1L [Signa 26.6 1.1E+02 0.0025 35.3 5.4 40 25-64 96-135 (907)
159 KOG0999 Microtubule-associated 26.5 1.6E+02 0.0034 34.0 6.4 100 13-117 105-220 (772)
160 KOG3647 Predicted coiled-coil 26.5 1E+02 0.0022 32.6 4.7 38 25-62 136-180 (338)
161 TIGR01242 26Sp45 26S proteasom 26.4 1E+02 0.0022 31.2 4.7 39 31-69 1-39 (364)
162 KOG2077 JNK/SAPK-associated pr 26.4 54 0.0012 37.6 2.9 92 22-122 329-423 (832)
163 PF04977 DivIC: Septum formati 26.3 1.6E+02 0.0036 23.0 4.9 28 21-48 23-50 (80)
164 smart00784 SPT2 SPT2 chromatin 26.0 39 0.00085 30.9 1.5 12 373-384 24-35 (111)
165 KOG2391 Vacuolar sorting prote 25.9 1.2E+02 0.0027 32.7 5.3 50 20-69 223-272 (365)
166 KOG0288 WD40 repeat protein Ti 25.8 1.4E+02 0.003 33.1 5.7 47 20-66 25-71 (459)
167 PF10211 Ax_dynein_light: Axon 25.7 2.6E+02 0.0057 26.8 7.0 31 40-70 124-154 (189)
168 PRK00736 hypothetical protein; 25.4 2.6E+02 0.0056 23.1 6.0 45 20-64 3-47 (68)
169 PF09738 DUF2051: Double stran 25.3 1.5E+02 0.0033 30.8 5.8 51 14-64 118-168 (302)
170 COG2900 SlyX Uncharacterized p 25.3 2.2E+02 0.0048 24.7 5.7 45 18-62 4-48 (72)
171 TIGR00414 serS seryl-tRNA synt 25.2 2.4E+02 0.0052 30.0 7.2 86 29-131 30-116 (418)
172 PF13600 DUF4140: N-terminal d 25.0 99 0.0021 26.0 3.6 33 34-66 68-100 (104)
173 PF01920 Prefoldin_2: Prefoldi 25.0 1E+02 0.0022 25.3 3.7 41 21-61 61-101 (106)
174 PF15070 GOLGA2L5: Putative go 24.8 1E+02 0.0023 34.8 4.8 40 18-57 118-157 (617)
175 PF06632 XRCC4: DNA double-str 24.7 1.4E+02 0.0029 31.6 5.3 40 21-60 143-182 (342)
176 COG3883 Uncharacterized protei 24.6 1.6E+02 0.0034 30.5 5.6 45 92-136 73-122 (265)
177 PF09730 BicD: Microtubule-ass 24.5 1.6E+02 0.0035 34.1 6.2 99 19-118 31-148 (717)
178 PF10174 Cast: RIM-binding pro 24.4 1.4E+02 0.0031 34.8 5.8 50 17-66 282-331 (775)
179 COG5570 Uncharacterized small 24.0 92 0.002 25.9 3.1 21 45-65 35-55 (57)
180 COG1579 Zn-ribbon protein, pos 23.9 2.9E+02 0.0064 28.1 7.3 33 24-56 47-79 (239)
181 KOG4673 Transcription factor T 23.9 2.1E+02 0.0046 33.8 6.9 75 36-125 474-557 (961)
182 PF00769 ERM: Ezrin/radixin/mo 23.9 1.9E+02 0.0041 28.8 5.9 85 21-112 32-116 (246)
183 KOG0977 Nuclear envelope prote 23.9 1.6E+02 0.0034 33.3 5.8 23 87-109 157-179 (546)
184 PF04645 DUF603: Protein of un 23.7 97 0.0021 30.7 3.8 21 51-71 139-159 (181)
185 COG1382 GimC Prefoldin, chaper 23.6 1.4E+02 0.003 27.8 4.5 35 18-52 73-107 (119)
186 TIGR00020 prfB peptide chain r 23.6 2.8E+02 0.0061 29.7 7.4 40 155-194 185-224 (364)
187 KOG3064 RNA-binding nuclear pr 23.4 39 0.00083 35.4 1.1 23 373-395 225-247 (303)
188 KOG2751 Beclin-like protein [S 23.3 1.8E+02 0.0039 32.2 6.0 44 26-69 180-223 (447)
189 PF14662 CCDC155: Coiled-coil 22.9 2.8E+02 0.0061 27.7 6.8 45 54-112 64-108 (193)
190 PTZ00454 26S protease regulato 22.9 1.7E+02 0.0036 31.0 5.5 48 22-69 15-62 (398)
191 TIGR02894 DNA_bind_RsfA transc 22.5 1.7E+02 0.0036 28.5 5.0 41 25-65 100-140 (161)
192 PRK13922 rod shape-determining 22.3 1.4E+02 0.0031 29.2 4.6 40 30-69 70-112 (276)
193 PF01763 Herpes_UL6: Herpesvir 22.1 1.3E+02 0.0028 34.0 4.8 39 20-58 368-406 (557)
194 PF05266 DUF724: Protein of un 22.1 4.3E+02 0.0093 25.7 7.7 39 25-63 113-151 (190)
195 PF12999 PRKCSH-like: Glucosid 21.4 2.1E+02 0.0045 28.1 5.5 6 15-20 117-122 (176)
196 smart00787 Spc7 Spc7 kinetocho 21.4 3.8E+02 0.0082 27.9 7.6 31 21-51 210-240 (312)
197 PRK15422 septal ring assembly 21.3 2.5E+02 0.0055 24.7 5.4 36 26-61 8-43 (79)
198 PF10473 CENP-F_leu_zip: Leuci 20.9 4.7E+02 0.01 24.7 7.5 28 97-124 78-106 (140)
199 PF09304 Cortex-I_coil: Cortex 20.7 1.8E+02 0.0038 26.8 4.5 43 14-56 57-99 (107)
200 PF11932 DUF3450: Protein of u 20.4 2.6E+02 0.0057 27.2 6.0 8 183-190 170-177 (251)
201 PF14257 DUF4349: Domain of un 20.2 1.4E+02 0.0031 29.0 4.2 27 96-122 166-193 (262)
202 KOG1962 B-cell receptor-associ 20.2 1.9E+02 0.0041 29.2 5.1 44 21-64 157-200 (216)
203 PF05701 WEMBL: Weak chloropla 20.1 2.3E+02 0.0049 31.0 6.0 105 20-124 307-419 (522)
204 PF04931 DNA_pol_phi: DNA poly 20.0 92 0.002 35.3 3.2 12 442-453 739-750 (784)
205 PF10359 Fmp27_WPPW: RNA pol I 20.0 2E+02 0.0043 31.1 5.5 50 20-69 168-233 (475)
No 1
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.084 Score=58.54 Aligned_cols=102 Identities=26% Similarity=0.364 Sum_probs=84.3
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhh
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALES 99 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ 99 (535)
.++++..|+.-+++.+.|+..|++++.++..|.-.|+.+|..++|+-+.+.. .++ .+-++--++..|+-
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~----~~r-------ei~~~~~~I~~L~~ 488 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVR----KDR-------EIRARDRRIERLEK 488 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhH-------HHHHHHHHHHHHHH
Confidence 4778889999999999999999999999999999999999999887664321 111 24446677888999
Q ss_pred hhhhhhHHHHHHH-HHHHHh-hhhhccccCCCCcc
Q 009396 100 GMKRAENEAESLK-KLKELE-SRVSNEALEGTPSK 132 (535)
Q Consensus 100 ekk~ae~E~E~wK-k~~eLE-s~vl~l~~~gTp~~ 132 (535)
+......++|+++ ++.+|+ .|.+-+--.|||++
T Consensus 489 ~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~pvk 523 (652)
T COG2433 489 ELEEKKKRVEELERKLAELRKMRKLELSGKGTPVK 523 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccee
Confidence 9999999999999 999998 67777778899999
No 2
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.21 E-value=0.11 Score=47.32 Aligned_cols=106 Identities=30% Similarity=0.384 Sum_probs=84.6
Q ss_pred chhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCccc--------cccccccccc------
Q 009396 17 CSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEIS--------LGVVDLTREG------ 82 (535)
Q Consensus 17 C~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~--------~~vvdlt~~~------ 82 (535)
=-+++.++-.|+.+..++..++..|..|+.-|+.+.-.++..|..++...+..++. +-|--|+.+-
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~ 95 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKK 95 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 34678888999999999999999999999999999999999999998877766541 2222222222
Q ss_pred ---CCCcchhhhhhhhhhhhhhhhhhHHHHHHH-HHHHHhhhhh
Q 009396 83 ---EGDGVAQLVVENKALESGMKRAENEAESLK-KLKELESRVS 122 (535)
Q Consensus 83 ---eee~~~Ql~~eN~~LE~ekk~ae~E~E~wK-k~~eLEs~vl 122 (535)
-.+++.|+.+..-.+|--.+..|.+..-|- ||.+|+...-
T Consensus 96 L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 96 LKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 256778888888888888999999999999 9999987643
No 3
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.52 E-value=0.36 Score=48.93 Aligned_cols=73 Identities=36% Similarity=0.499 Sum_probs=60.7
Q ss_pred hhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhcc-CcccccccccccccCCCcchhhhhhhhhhhhhhhhhhHHHHHH
Q 009396 33 KKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKG-SEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAESL 111 (535)
Q Consensus 33 Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~-~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ae~E~E~w 111 (535)
.+|..|+.+..||.|+..||..|-.||..|..+-+- .|. +-.|-++|..||-..++..-|+.-+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~er---------------lk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQER---------------LKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhchhHHHHH
Confidence 677889999999999999999998888888664332 232 5557899999999999999999999
Q ss_pred H-HHHHHhhh
Q 009396 112 K-KLKELESR 120 (535)
Q Consensus 112 K-k~~eLEs~ 120 (535)
| ||.|||--
T Consensus 197 ~~r~~ELe~~ 206 (290)
T COG4026 197 KKRWDELEPG 206 (290)
T ss_pred HHHHHHhccc
Confidence 9 99999864
No 4
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.84 E-value=0.55 Score=50.49 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=35.4
Q ss_pred hhhhhhhhhhHHHHHHH-HHHHHhhhhhccccCCCCcceeechh
Q 009396 96 ALESGMKRAENEAESLK-KLKELESRVSNEALEGTPSKHIISME 138 (535)
Q Consensus 96 ~LE~ekk~ae~E~E~wK-k~~eLEs~vl~l~~~gTp~~y~~~~~ 138 (535)
.|..+-..|...++-|+ ++.++..++.+.++||.|..|+.-..
T Consensus 408 ~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~ 451 (569)
T PRK04778 408 GLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFF 451 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence 34455566778889999 99999999999999999999877533
No 5
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.33 E-value=0.51 Score=44.19 Aligned_cols=97 Identities=26% Similarity=0.352 Sum_probs=50.3
Q ss_pred cccchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhh
Q 009396 14 SRKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVE 93 (535)
Q Consensus 14 ~~rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~e 93 (535)
-..|++|..|+..+..++++++.+....+..+++|..+...|+.+++.|+.+.+.+.. .+-.+. |-++-|.++
T Consensus 87 ~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k--~~e~l~-----DE~~~L~l~ 159 (194)
T PF08614_consen 87 YRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNK--ANEILQ-----DELQALQLQ 159 (194)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-----HHHHHHHHH
T ss_pred ccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-----HHHHHHHHH
Confidence 3679999999999999999999999999999999999999888888888776655532 111111 226678999
Q ss_pred hhhhhhhhhhhhHHHH----HHHHHHHH
Q 009396 94 NKALESGMKRAENEAE----SLKKLKEL 117 (535)
Q Consensus 94 N~~LE~ekk~ae~E~E----~wKk~~eL 117 (535)
++.||-..++.+.|+. -|-.++.=
T Consensus 160 ~~~~e~k~~~l~~En~~Lv~Rwm~~k~~ 187 (194)
T PF08614_consen 160 LNMLEEKLRKLEEENRELVERWMQRKAQ 187 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999964 45544443
No 6
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=88.23 E-value=1.2 Score=37.32 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 38 FEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 38 ~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
|+.||+|...+..-...|+.|+..||..+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n 34 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKN 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555544443
No 7
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.87 E-value=1.9 Score=48.54 Aligned_cols=60 Identities=22% Similarity=0.424 Sum_probs=51.5
Q ss_pred hhhHhhhh-cccchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHh
Q 009396 6 SIKSEMVE-SRKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKRE 65 (535)
Q Consensus 6 ~~~~~~~~-~~rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~ 65 (535)
.+|+++.. -..|-+|+.|+..|....|+=+.-...||.|++++...|+.+|..|.+-|+.
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~ 517 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKA 517 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555543 3567788999999999999999999999999999999999999999999764
No 8
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=85.26 E-value=3.7 Score=39.61 Aligned_cols=105 Identities=33% Similarity=0.415 Sum_probs=69.0
Q ss_pred ccchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC-cc----ccccccccccc-CCCcch
Q 009396 15 RKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS-EI----SLGVVDLTREG-EGDGVA 88 (535)
Q Consensus 15 ~rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~-E~----~~~vvdlt~~~-eee~~~ 88 (535)
.++-|...|+..++.+++.-..-.+.+|.++++|+.+...+.+-|+.|....+.. +. ..-|-+|+..- +-+.-+
T Consensus 113 ~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Ra 192 (237)
T PF00261_consen 113 RKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRA 192 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888899999999999999999999999999999999999998885533322 11 11222222221 111111
Q ss_pred h-hhhhhhhhhhhhhhhhHHHHHHH-HHHHHhh
Q 009396 89 Q-LVVENKALESGMKRAENEAESLK-KLKELES 119 (535)
Q Consensus 89 Q-l~~eN~~LE~ekk~ae~E~E~wK-k~~eLEs 119 (535)
. .--.-..||-+..+.+.++..|| +|+.+.-
T Consensus 193 e~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~ 225 (237)
T PF00261_consen 193 EFAERRVKKLEKEIDRLEDELEKEKEKYKKVQE 225 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11223456666777788888999 8876643
No 9
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=82.85 E-value=3 Score=45.17 Aligned_cols=92 Identities=27% Similarity=0.490 Sum_probs=64.2
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhh
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALE 98 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE 98 (535)
.|+.+...+...|.....-|-.+...++++......++.+..++..... .|.
T Consensus 355 ~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~----------------------------~L~ 406 (560)
T PF06160_consen 355 ELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQ----------------------------SLR 406 (560)
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHH
Confidence 4455555556666666666666666666666665555555555543322 344
Q ss_pred hhhhhhhHHHHHHH-HHHHHhhhhhccccCCCCcceeechh
Q 009396 99 SGMKRAENEAESLK-KLKELESRVSNEALEGTPSKHIISME 138 (535)
Q Consensus 99 ~ekk~ae~E~E~wK-k~~eLEs~vl~l~~~gTp~~y~~~~~ 138 (535)
-+-++|...+.-|+ ++-++-.++.+.++||.|-.|++-..
T Consensus 407 ~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~ 447 (560)
T PF06160_consen 407 KDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFF 447 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 55678888999999 99999999999999999999877543
No 10
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=82.67 E-value=3.9 Score=45.29 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=13.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHH
Q 009396 28 ESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKA 61 (535)
Q Consensus 28 e~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~ 61 (535)
+..+++...+.+.|......|+.+...++.++..
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~ 175 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVER 175 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 11
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=82.14 E-value=4.2 Score=40.08 Aligned_cols=98 Identities=27% Similarity=0.363 Sum_probs=51.2
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh-------chHHHHHHHHHhhccCcccccccccccccCCCcchhhh
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKN-------GIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLV 91 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~-------~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~ 91 (535)
||+.|+..++.+..+...+...-+.+-..|+.+.. .|+.....+...+..++.+..+.--+++.=+..+..+-
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~ 88 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAE 88 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777776666655544444444443333 33333333333333332222222222222234455566
Q ss_pred hhhhhhhhhhhhhhHHHHHHH-HHHH
Q 009396 92 VENKALESGMKRAENEAESLK-KLKE 116 (535)
Q Consensus 92 ~eN~~LE~ekk~ae~E~E~wK-k~~e 116 (535)
-+-..|+-++.+.+.|++.|+ ++.+
T Consensus 89 ~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 89 AEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666788889999999999999 5443
No 12
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=82.08 E-value=5.4 Score=40.61 Aligned_cols=90 Identities=26% Similarity=0.328 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhh
Q 009396 22 SKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGM 101 (535)
Q Consensus 22 ~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ek 101 (535)
.-+..++.|+++.+.|-+.|.+.+++|+.|...+..|+..|+.+.+.+.. .-.++.-+.+.+..+.
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~--------------eE~~~~~~~n~~~~~l 108 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDE--------------EEEEYWREYNELQLEL 108 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 44567778888888888888888888888888888888888776665531 0235677788888888
Q ss_pred hhhhHHHHHHH-HHHHHhhhhhccc
Q 009396 102 KRAENEAESLK-KLKELESRVSNEA 125 (535)
Q Consensus 102 k~ae~E~E~wK-k~~eLEs~vl~l~ 125 (535)
...+.|....+ +|.-+-..+-+|.
T Consensus 109 ~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 109 IEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888 7777666665555
No 13
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=79.97 E-value=3 Score=35.97 Aligned_cols=35 Identities=37% Similarity=0.556 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHH
Q 009396 23 KCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEE 57 (535)
Q Consensus 23 r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~ 57 (535)
++.-|..||+|-+.....+++|+++|+.+|.-+|+
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999999999988875
No 14
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=79.77 E-value=2.6 Score=45.91 Aligned_cols=48 Identities=10% Similarity=0.244 Sum_probs=28.1
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
+.+.++.+||.+|.+.+.|.+.+.++.+++++....++.|++.|+.+-
T Consensus 73 eqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666555555555555555555566665544
No 15
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=78.59 E-value=5.9 Score=34.44 Aligned_cols=66 Identities=23% Similarity=0.323 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhhhhhhHHHHHHH-HHHH
Q 009396 38 FEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAESLK-KLKE 116 (535)
Q Consensus 38 ~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ae~E~E~wK-k~~e 116 (535)
++.||+|....++....|+=|+..||..+..+.. .+.++--.+..|+.|-...-.|-.+|. |...
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~--------------e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQ--------------EVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777776666521 022223333456666666677778888 7655
Q ss_pred H
Q 009396 117 L 117 (535)
Q Consensus 117 L 117 (535)
|
T Consensus 72 L 72 (79)
T PRK15422 72 L 72 (79)
T ss_pred H
Confidence 4
No 16
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=76.94 E-value=19 Score=32.03 Aligned_cols=86 Identities=27% Similarity=0.342 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhhhh
Q 009396 24 CLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKR 103 (535)
Q Consensus 24 ~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ 103 (535)
..+|--.+|=-+-|-++|-+|+.+++.+.-.+..||+.+|..--...- . ....+.+ .-......|.-|.|.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~------~-~~~~~g~--~~~~~~~~l~~eLk~ 73 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS------L-AKLSEGG--SPSGREAELQEELKL 73 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc------c-ccCCCCC--CCccccHHHHHHHHH
Confidence 456777788888999999999999999999999999999984322210 0 0000000 113345578888999
Q ss_pred hhHHHHHHH-HHHHHh
Q 009396 104 AENEAESLK-KLKELE 118 (535)
Q Consensus 104 ae~E~E~wK-k~~eLE 118 (535)
|+.+|.... |..+|+
T Consensus 74 a~~qi~~Ls~kv~eLq 89 (96)
T PF11365_consen 74 AREQINELSGKVMELQ 89 (96)
T ss_pred HHHHHHHHhhHHHHHh
Confidence 999999998 888876
No 17
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=76.69 E-value=9.4 Score=31.99 Aligned_cols=46 Identities=30% Similarity=0.396 Sum_probs=31.2
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
.||.||..+---|.-.+-+++.|..+-..|..+...|..|...|+.
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4577776666667766777777777666666666666666666654
No 18
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=76.58 E-value=3.8 Score=38.47 Aligned_cols=58 Identities=29% Similarity=0.455 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhhhhhhHHHHHHH-HHHHH
Q 009396 39 EKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAESLK-KLKEL 117 (535)
Q Consensus 39 E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ae~E~E~wK-k~~eL 117 (535)
.-+++|+ +||.+|..|..||..|++++.. .-.|...|| ||+.|
T Consensus 71 KRv~Qk~-eLE~~k~~L~qqv~~L~~e~s~-----------------------------------~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 71 KRVQQKH-ELEKEKAELQQQVEKLKEENSR-----------------------------------LRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHH
Confidence 3455554 7889999999999999886643 346889999 99999
Q ss_pred hhhhhc-cccCCCCcc
Q 009396 118 ESRVSN-EALEGTPSK 132 (535)
Q Consensus 118 Es~vl~-l~~~gTp~~ 132 (535)
-.-+-. -..|++|+.
T Consensus 115 ~~~~~~~~~~~~~pS~ 130 (135)
T KOG4196|consen 115 QNSAVSVGASPVSPSS 130 (135)
T ss_pred HhhhhhccCCCCCCcc
Confidence 887654 337777775
No 19
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=75.98 E-value=6.5 Score=43.70 Aligned_cols=108 Identities=25% Similarity=0.272 Sum_probs=61.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh-------ccCcc-------ccccccccccc-
Q 009396 18 SELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK-------KGSEI-------SLGVVDLTREG- 82 (535)
Q Consensus 18 ~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~-------E~~E~-------~~~vvdlt~~~- 82 (535)
-+|.+.+.+|..+|.+...+++.|...++.+..|....+.+...+.++. +.++. -..+|+-+...
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl 410 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRL 410 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666655555555444444443333 33321 12333322222
Q ss_pred ---------------------------CCCcchhhhhhhhhhhhhhhhhhHHHHHHH-HHHHHhhhhhccc
Q 009396 83 ---------------------------EGDGVAQLVVENKALESGMKRAENEAESLK-KLKELESRVSNEA 125 (535)
Q Consensus 83 ---------------------------eee~~~Ql~~eN~~LE~ekk~ae~E~E~wK-k~~eLEs~vl~l~ 125 (535)
-+....|.+-+=+.|..+++.++.|+..|. .|+.|+..+-++.
T Consensus 411 ~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~ 481 (594)
T PF05667_consen 411 VELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLP 481 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 122233455555667777888888888888 8888888766654
No 20
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=75.49 E-value=18 Score=33.33 Aligned_cols=91 Identities=23% Similarity=0.368 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhh--hhhhhhh
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLV--VENKALE 98 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~--~eN~~LE 98 (535)
.++...+..++...+.++...+..+..+..+...+..+...+++.+..+-.+.|.+. +-.|| ..+..=+
T Consensus 83 keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~---------~P~ll~Dy~~~~~~ 153 (177)
T PF13870_consen 83 KEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLG---------VPALLRDYDKTKEE 153 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---------CcHHHHHHHHHHHH
Confidence 445555666666666666666666666666555555555555554444432333221 11222 1222211
Q ss_pred hhhhhhhHHHHHHH-HHHHHhhhhh
Q 009396 99 SGMKRAENEAESLK-KLKELESRVS 122 (535)
Q Consensus 99 ~ekk~ae~E~E~wK-k~~eLEs~vl 122 (535)
...-+.+|..|+ +++.|+.++.
T Consensus 154 --~~~l~~~i~~l~rk~~~l~~~i~ 176 (177)
T PF13870_consen 154 --VEELRKEIKELERKVEILEMRIK 176 (177)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhhc
Confidence 123346799999 9999998875
No 21
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=72.68 E-value=14 Score=37.28 Aligned_cols=58 Identities=22% Similarity=0.364 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcc-cccccc
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEI-SLGVVD 77 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~-~~~vvd 77 (535)
..+-+..+.+|+...+-.++.++..+.+++.++..++.|+.++.++.++.+. +.++-|
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~ 87 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD 87 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3444577888888889999999999999999999999999999888777744 444433
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=72.41 E-value=14 Score=41.08 Aligned_cols=53 Identities=28% Similarity=0.475 Sum_probs=37.4
Q ss_pred cchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhcc
Q 009396 16 KCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKG 68 (535)
Q Consensus 16 rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~ 68 (535)
.|-.|++++..|+.++...+.+.+.|+.+.+++......+..|...|+.+.+.
T Consensus 165 e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e 217 (546)
T PF07888_consen 165 EVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777776664443
No 23
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=71.61 E-value=7.6 Score=40.44 Aligned_cols=66 Identities=29% Similarity=0.392 Sum_probs=56.3
Q ss_pred cchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCc--ccccccccccc
Q 009396 16 KCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSE--ISLGVVDLTRE 81 (535)
Q Consensus 16 rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E--~~~~vvdlt~~ 81 (535)
-|-.||.+-.-|..+++-|..+...||+.+.-.......|+.||+.||-+.|.+- ...+-++|..-
T Consensus 75 ~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~ 142 (307)
T PF10481_consen 75 SCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPC 142 (307)
T ss_pred HHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccc
Confidence 4889999999999999999999999999999999999999999999999999883 33444444433
No 24
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=69.12 E-value=9.3 Score=41.88 Aligned_cols=50 Identities=16% Similarity=0.335 Sum_probs=43.5
Q ss_pred cchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHh
Q 009396 16 KCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKRE 65 (535)
Q Consensus 16 rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~ 65 (535)
+=.|||+++..|..|++.++.+...+|+|+++|++|...|+..+++++.+
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 45688999999999999888888889999999999999999999887765
No 25
>PF14632 SPT6_acidic: Acidic N-terminal SPT6
Probab=68.48 E-value=2.4 Score=37.21 Aligned_cols=9 Identities=67% Similarity=1.110 Sum_probs=7.7
Q ss_pred ccCCccccC
Q 009396 376 NLNGFIVDD 384 (535)
Q Consensus 376 sl~~FIvdD 384 (535)
-+.||||||
T Consensus 19 ~~eGFIvDd 27 (92)
T PF14632_consen 19 EREGFIVDD 27 (92)
T ss_pred HhcCCccCC
Confidence 389999986
No 26
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=68.47 E-value=13 Score=34.22 Aligned_cols=85 Identities=25% Similarity=0.316 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCccc-----cccccccccc-CCCc----chhhhhh
Q 009396 24 CLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEIS-----LGVVDLTREG-EGDG----VAQLVVE 93 (535)
Q Consensus 24 ~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~-----~~vvdlt~~~-eee~----~~Ql~~e 93 (535)
+..|-+|..-....++.|++++|+++.+...++.|+..|...+..+|.. .-+-+..... +.+. +-+|.-+
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rr 81 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRR 81 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhh
Confidence 3456667777777788889999999999999999999997777777541 0011100000 1111 1257777
Q ss_pred hhhhhhhhhhhhHHH
Q 009396 94 NKALESGMKRAENEA 108 (535)
Q Consensus 94 N~~LE~ekk~ae~E~ 108 (535)
+..||-|...++.=+
T Consensus 82 iq~LEeele~ae~~L 96 (143)
T PF12718_consen 82 IQLLEEELEEAEKKL 96 (143)
T ss_pred HHHHHHHHHHHHHHH
Confidence 778887777666543
No 27
>PRK03918 chromosome segregation protein; Provisional
Probab=67.99 E-value=21 Score=39.51 Aligned_cols=46 Identities=26% Similarity=0.402 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHh
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKRE 65 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~ 65 (535)
.+.++..|+.++.....+++.|+.++..+..+...++.+|+.|+..
T Consensus 191 i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~ 236 (880)
T PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEEL 236 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677777777777777777777777777777766666543
No 28
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=67.65 E-value=18 Score=37.88 Aligned_cols=84 Identities=32% Similarity=0.434 Sum_probs=67.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcc---------cccccccccccCCCcchhhhhhhh
Q 009396 25 LELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEI---------SLGVVDLTREGEGDGVAQLVVENK 95 (535)
Q Consensus 25 ~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~---------~~~vvdlt~~~eee~~~Ql~~eN~ 95 (535)
-.|-.++++.+.+++.||.-|+.+.+||.-+.-|-...|.-+.++-+ ..-||| |.-|..||+
T Consensus 129 e~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivD---------IDaLi~ENR 199 (319)
T PF09789_consen 129 EDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVD---------IDALIMENR 199 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc---------HHHHHHHHH
Confidence 34566789999999999999999999999998888887766666622 122334 667999999
Q ss_pred hhhhhhhhhhHHHHHHH----HHHHH
Q 009396 96 ALESGMKRAENEAESLK----KLKEL 117 (535)
Q Consensus 96 ~LE~ekk~ae~E~E~wK----k~~eL 117 (535)
-|---.+.++.|.+.-| |||.+
T Consensus 200 yL~erl~q~qeE~~l~k~~i~KYK~~ 225 (319)
T PF09789_consen 200 YLKERLKQLQEEKELLKQTINKYKSA 225 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 88853
No 29
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=67.23 E-value=22 Score=35.98 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=13.4
Q ss_pred hhHHHHHHH-HHHHHhhh
Q 009396 104 AENEAESLK-KLKELESR 120 (535)
Q Consensus 104 ae~E~E~wK-k~~eLEs~ 120 (535)
-..||.-+| +|..||..
T Consensus 274 t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 274 TRSEVKRLKAKVDALEKL 291 (325)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 567888888 88888864
No 30
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=66.68 E-value=12 Score=28.92 Aligned_cols=33 Identities=39% Similarity=0.658 Sum_probs=24.6
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 32 EKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 32 ~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
+||+...+.|+.++..|..+...|..++..|++
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567777777777777777777777777777765
No 31
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=66.07 E-value=17 Score=34.27 Aligned_cols=51 Identities=31% Similarity=0.467 Sum_probs=36.9
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
.|+.+|..|+.+|..|..-++.|.-.+..|..+-+.+|+.++.|+.++..+
T Consensus 127 ~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 127 QLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777777777777777777766543
No 32
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.01 E-value=15 Score=43.63 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=47.8
Q ss_pred cchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhch-------------HHHHHHHHHhhccCc
Q 009396 16 KCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGI-------------EEELKALKREKKGSE 70 (535)
Q Consensus 16 rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~l-------------e~El~~lKr~~E~~E 70 (535)
..-+|++++..|+.+++..+.+++.++.++..+..++..+ ..|+..++++.+.++
T Consensus 745 eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~ 812 (1311)
T TIGR00606 745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQA 812 (1311)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999999999999999999999999777 888888888777664
No 33
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=65.86 E-value=37 Score=31.83 Aligned_cols=51 Identities=39% Similarity=0.548 Sum_probs=31.7
Q ss_pred hhhhHHHHHHHHHHh--------------hhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 19 ELESKCLELESEIEK--------------KKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 19 E~e~r~~~Le~EI~K--------------k~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
.|+.+|..||++++- .+.+.+-|++++-.+-.+.+.|+.||..|+.+++-+
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666543 344555566666666677777777777776655544
No 34
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=64.57 E-value=11 Score=43.65 Aligned_cols=27 Identities=44% Similarity=0.527 Sum_probs=22.9
Q ss_pred hhhhcccchhhhhHHHHHHHHHHhhhh
Q 009396 10 EMVESRKCSELESKCLELESEIEKKKT 36 (535)
Q Consensus 10 ~~~~~~rC~E~e~r~~~Le~EI~Kk~~ 36 (535)
=+.+-+||.|||.|+.=|+.||.|-.+
T Consensus 51 fv~evrRcdemeRklrfl~~ei~k~~i 77 (829)
T KOG2189|consen 51 FVNEVRRCDEMERKLRFLESEIKKAGI 77 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356779999999999999999999443
No 35
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=64.55 E-value=26 Score=31.39 Aligned_cols=93 Identities=27% Similarity=0.373 Sum_probs=63.4
Q ss_pred chhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCccc-ccccccccccCCCcchhhhh--h
Q 009396 17 CSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEIS-LGVVDLTREGEGDGVAQLVV--E 93 (535)
Q Consensus 17 C~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~-~~vvdlt~~~eee~~~Ql~~--e 93 (535)
.-.|..++..|..++......++.|+.++++++.+...++...+.++......+.. ..- + ++=.-.+..+ .
T Consensus 54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~----k--ee~~klk~~~~~~ 127 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQE----K--EELQKLKNQLQQR 127 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--HHHHHHHHHHHHH
Confidence 34568888899999999999999999999999999999999988887766554320 000 0 0000011111 2
Q ss_pred hhhhhhhhhhhhHHHHHHH-HHH
Q 009396 94 NKALESGMKRAENEAESLK-KLK 115 (535)
Q Consensus 94 N~~LE~ekk~ae~E~E~wK-k~~ 115 (535)
-...+-|+|+-|.|++-.| ++.
T Consensus 128 ~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 128 KTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 2356678899999988888 653
No 36
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=64.48 E-value=12 Score=36.15 Aligned_cols=51 Identities=27% Similarity=0.428 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCc
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSE 70 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E 70 (535)
.++||..||..+...+...+..+.|+.+...-...++++|.....+.+..|
T Consensus 90 ~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E 140 (237)
T PF00261_consen 90 DEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAE 140 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 377888888888888888888888888777777777777777655555544
No 37
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=63.80 E-value=30 Score=38.47 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=15.2
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHH-HHHHHhhhh
Q 009396 90 LVVENKALESGMKRAENEAESLK-KLKELESRV 121 (535)
Q Consensus 90 l~~eN~~LE~ekk~ae~E~E~wK-k~~eLEs~v 121 (535)
|.-+-..++.+....+.++..++ ++.+++..+
T Consensus 871 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 903 (1179)
T TIGR02168 871 LESELEALLNERASLEEALALLRSELEELSEEL 903 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555 555554443
No 38
>PRK02224 chromosome segregation protein; Provisional
Probab=62.74 E-value=25 Score=39.11 Aligned_cols=47 Identities=28% Similarity=0.435 Sum_probs=21.3
Q ss_pred cchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHH
Q 009396 16 KCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKAL 62 (535)
Q Consensus 16 rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~l 62 (535)
++.+|++++..|+.++++...+.+.|+....++..+...+..+++.|
T Consensus 538 ~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 584 (880)
T PRK02224 538 RAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAEL 584 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34444445555555554444444444444444444444444444444
No 39
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.58 E-value=25 Score=30.62 Aligned_cols=65 Identities=26% Similarity=0.351 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchh-hhhhhhhhhhhhhhhhHHHHHHH-HHH
Q 009396 38 FEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQ-LVVENKALESGMKRAENEAESLK-KLK 115 (535)
Q Consensus 38 ~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Q-l~~eN~~LE~ekk~ae~E~E~wK-k~~ 115 (535)
++.||+|.+.-++-...|+-|+..||..+-.+-+ -+| +---+-+|+.|-...-.|--.|. ++.
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~---------------e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQ---------------EVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777775554421 011 12234456666667777888888 766
Q ss_pred HH
Q 009396 116 EL 117 (535)
Q Consensus 116 eL 117 (535)
.|
T Consensus 71 sL 72 (79)
T COG3074 71 AL 72 (79)
T ss_pred HH
Confidence 55
No 40
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=62.21 E-value=14 Score=32.28 Aligned_cols=45 Identities=18% Similarity=0.386 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHhh--hhhHHHHHHHHHHHHhhhhchHHHHHHHHHh
Q 009396 21 ESKCLELESEIEKK--KTQFEKLEQKFKELEDEKNGIEEELKALKRE 65 (535)
Q Consensus 21 e~r~~~Le~EI~Kk--~~e~E~LE~K~kel~~EK~~le~El~~lKr~ 65 (535)
+.|+..||.+++-. +.+++.|+....++.-+-..++..|+.+.++
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 66666677766666 6666666666666655555555555555443
No 41
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.88 E-value=20 Score=27.81 Aligned_cols=39 Identities=23% Similarity=0.533 Sum_probs=32.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHh
Q 009396 27 LESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKRE 65 (535)
Q Consensus 27 Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~ 65 (535)
||..-.-.+..|+.|-+.+..|..|+..|..|+..|+..
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677778888888888888999999999998888753
No 42
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=61.03 E-value=31 Score=38.62 Aligned_cols=45 Identities=27% Similarity=0.490 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHh
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKRE 65 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~ 65 (535)
+.++..|+.++.+.+.++..|+.++..+..++..++.++..|.++
T Consensus 797 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~ 841 (1164)
T TIGR02169 797 QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQ 841 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666655555555443
No 43
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=60.80 E-value=20 Score=29.38 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHH
Q 009396 23 KCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKAL 62 (535)
Q Consensus 23 r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~l 62 (535)
|+.+||.++++.++...-++....++..+...|++-++.|
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888877777777766666666666655554
No 44
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=60.54 E-value=38 Score=30.86 Aligned_cols=42 Identities=24% Similarity=0.501 Sum_probs=24.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhc
Q 009396 26 ELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKK 67 (535)
Q Consensus 26 ~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E 67 (535)
.|.+.|..+..|+..|....+.|..+|..+.+||-.|-.+++
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e 61 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENE 61 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666666666666655544433
No 45
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=60.47 E-value=25 Score=31.55 Aligned_cols=38 Identities=18% Similarity=0.377 Sum_probs=15.9
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 32 EKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 32 ~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
++-....|.|..+++.+.++...++..+..|+.+.+.+
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ 85 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEEL 85 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444433333
No 46
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=60.24 E-value=22 Score=36.37 Aligned_cols=52 Identities=37% Similarity=0.491 Sum_probs=42.7
Q ss_pred chhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhcc
Q 009396 17 CSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKG 68 (535)
Q Consensus 17 C~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~ 68 (535)
.-++++.+..|+.|......+++.||....++..|...++.|+..|+++.+.
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~ 96 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEE 96 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888999999999999999988899999888775553
No 47
>smart00338 BRLZ basic region leucin zipper.
Probab=58.73 E-value=23 Score=27.90 Aligned_cols=38 Identities=26% Similarity=0.449 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHH
Q 009396 22 SKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEEL 59 (535)
Q Consensus 22 ~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El 59 (535)
..+..||.+++....++..|..+...|..|...+..++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666666666655555544443
No 48
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=58.10 E-value=16 Score=40.78 Aligned_cols=8 Identities=13% Similarity=0.165 Sum_probs=4.1
Q ss_pred ceeccCCC
Q 009396 187 VIDICDSD 194 (535)
Q Consensus 187 vidi~Dsd 194 (535)
|.|++.-+
T Consensus 527 l~dli~v~ 534 (1164)
T TIGR02169 527 VAQLGSVG 534 (1164)
T ss_pred HHHhcCcC
Confidence 45555554
No 49
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=58.02 E-value=22 Score=27.99 Aligned_cols=35 Identities=43% Similarity=0.668 Sum_probs=17.3
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 32 EKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 32 ~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
++|+...+.||.++..|+.+...|..++..|+.++
T Consensus 22 ~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 22 QRKKQYIEELEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554444433
No 50
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=57.70 E-value=20 Score=28.26 Aligned_cols=31 Identities=45% Similarity=0.609 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELE 49 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~ 49 (535)
+||.++..|+.+....+.++..|+.....|.
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 51
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=57.25 E-value=20 Score=31.38 Aligned_cols=62 Identities=26% Similarity=0.365 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHhhhhhHHHH--HHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhh
Q 009396 20 LESKCLELESEIEKKKTQFEKL--EQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKA 96 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~L--E~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~ 96 (535)
+++|+..++.-+++.+.+.+.| ...+..|..+...+.++++.+..+-+...+ .+.|.+||..
T Consensus 40 l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~---------------~~~lLlE~~l 103 (106)
T PF10805_consen 40 LEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH---------------QLDLLLENEL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---------------HHHHHHHHHh
Confidence 4555566666666666666666 666777788888888888888887777765 5556766654
No 52
>PRK11637 AmiB activator; Provisional
Probab=57.08 E-value=41 Score=35.02 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=36.3
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
.+++++..|+.+|++.+.+...++.+.+++..+...++.+|..+.+..
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i 91 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKL 91 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888777777777777777777777775543
No 53
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=56.66 E-value=35 Score=33.39 Aligned_cols=76 Identities=32% Similarity=0.401 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHH-HHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhh
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKF-KELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALES 99 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~-kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ 99 (535)
=+|+-.||.+=.+...+...|..+. .....=+...+.||+.|++. |..+..+|..|+.
T Consensus 17 IekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~---------------------id~~~~eka~l~~ 75 (312)
T PF00038_consen 17 IEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQ---------------------IDDLSKEKARLEL 75 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHH---------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHh---------------------hhhHHHHhhHHhh
Confidence 3455566666555555555555553 22222455566666666654 3445566667777
Q ss_pred hhhhhhHHHHHHH-HHHHH
Q 009396 100 GMKRAENEAESLK-KLKEL 117 (535)
Q Consensus 100 ekk~ae~E~E~wK-k~~eL 117 (535)
+...+..|++-|+ ||.+.
T Consensus 76 e~~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 76 EIDNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 7777777777776 66544
No 54
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=56.15 E-value=23 Score=36.21 Aligned_cols=47 Identities=36% Similarity=0.562 Sum_probs=38.1
Q ss_pred cchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHh-------hhhchHHHHHHH
Q 009396 16 KCSELESKCLELESEIEKKKTQFEKLEQKFKELED-------EKNGIEEELKAL 62 (535)
Q Consensus 16 rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~-------EK~~le~El~~l 62 (535)
.|..+..--..|+..|+||+.|+|-.+.+++-|.+ |-..||.||+.|
T Consensus 184 ~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 184 QLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 35667777788999999999999999999999875 555666676665
No 55
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=55.55 E-value=66 Score=35.41 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhh
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALES 99 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ 99 (535)
+.+++.+|+.+|.....+.+.++++.+.+..+...++..+..+++.... ....+--
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~------------------------~GG~~~~ 262 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS------------------------EGGDLFE 262 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------hcchHHH
Confidence 3455666666666666666666666666666666666666655442211 1223344
Q ss_pred hhhhhhHHHHHHH-HHHHHhhhhhccccCCCCcc
Q 009396 100 GMKRAENEAESLK-KLKELESRVSNEALEGTPSK 132 (535)
Q Consensus 100 ekk~ae~E~E~wK-k~~eLEs~vl~l~~~gTp~~ 132 (535)
++...+++++.|+ ...+.+..+.++.....|+-
T Consensus 263 ~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~ 296 (650)
T TIGR03185 263 EREQLERQLKEIEAARKANRAQLRELAADPLPLL 296 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHh
Confidence 4667777777777 77777777777776666664
No 56
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=53.82 E-value=22 Score=36.58 Aligned_cols=38 Identities=37% Similarity=0.579 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHH
Q 009396 25 LELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKAL 62 (535)
Q Consensus 25 ~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~l 62 (535)
.+|-.|++.+..+|+.++.+++.|+-|+..|++.++.|
T Consensus 152 eeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 152 EELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556667777777777777777777777777766654
No 57
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=53.57 E-value=31 Score=39.86 Aligned_cols=112 Identities=30% Similarity=0.391 Sum_probs=80.0
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHH-------HHHHHHhhhhchHHHHHHHHHhhccCccccccccccccc----CCCc
Q 009396 18 SELESKCLELESEIEKKKTQFEKLEQ-------KFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREG----EGDG 86 (535)
Q Consensus 18 ~E~e~r~~~Le~EI~Kk~~e~E~LE~-------K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~----eee~ 86 (535)
.+||.++.++..++.+-..|+-.|-. -+.+|..+|..++.|++.|+.+.+..|+ ++ =|=.
T Consensus 88 ~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~ek---------en~~Lkye~~ 158 (769)
T PF05911_consen 88 SELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEK---------ENSSLKYELH 158 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 36788888888888888888775533 4667888888888888888777666643 11 0112
Q ss_pred ch--hhhhhhhhhhhhhhhhhH----HHHHHHHHHHHhhhhhccc------cCCCCcceeechhhc
Q 009396 87 VA--QLVVENKALESGMKRAEN----EAESLKKLKELESRVSNEA------LEGTPSKHIISMERE 140 (535)
Q Consensus 87 ~~--Ql~~eN~~LE~ekk~ae~----E~E~wKk~~eLEs~vl~l~------~~gTp~~y~~~~~~~ 140 (535)
|. +|-|+|-+.|+-.+.|+. =.|.-||.-.||.---+|- +|| |.- |..|+-+
T Consensus 159 ~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpg-paa-~a~mk~e 222 (769)
T PF05911_consen 159 VLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPG-PAA-LAQMKNE 222 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-hHH-HHHhHHH
Confidence 33 388999999999999986 4688899999997666665 899 443 2445554
No 58
>PRK10698 phage shock protein PspA; Provisional
Probab=53.07 E-value=16 Score=35.58 Aligned_cols=47 Identities=32% Similarity=0.453 Sum_probs=36.1
Q ss_pred hhhhHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 19 ELESKCLELESEIEKKKTQ-FEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e-~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
.||+||+.+|++.+-...- --.|+.+|++|+. ...++.||.+||++.
T Consensus 170 rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~-~~~ve~ELa~LK~~~ 217 (222)
T PRK10698 170 SFERRIDQMEAEAESHGFGKQKSLDQQFAELKA-DDEISEQLAALKAKM 217 (222)
T ss_pred HHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhc-cchHHHHHHHHHHHh
Confidence 4799999999998865210 1238999999976 357999999999853
No 59
>PRK02224 chromosome segregation protein; Provisional
Probab=52.76 E-value=32 Score=38.39 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHhhhhhHH
Q 009396 20 LESKCLELESEIEKKKTQFE 39 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E 39 (535)
++..+.+|+.+|++.+.+++
T Consensus 480 ~~~~~~~le~~l~~~~~~~e 499 (880)
T PRK02224 480 LEAELEDLEEEVEEVEERLE 499 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333
No 60
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=52.56 E-value=32 Score=33.18 Aligned_cols=40 Identities=33% Similarity=0.546 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHH
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELK 60 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~ 60 (535)
+.|+..++.+|...+.++|.|+++|..++.|+..|..-..
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777888888888888888888887777665554333
No 61
>KOG3779 consensus Homeobox transcription factor prospero [Transcription]
Probab=51.91 E-value=8.7 Score=42.65 Aligned_cols=55 Identities=24% Similarity=0.386 Sum_probs=36.9
Q ss_pred CCCCCcCCccccccCCCcccCccCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhh
Q 009396 355 PATEDVEDDESEDAGSDSESENLNGFIVDDGTEDSDGDDASSGAQDDSDMDFDEILSRLN 414 (535)
Q Consensus 355 ~~~~d~EdsE~e~~gs~sE~esl~~FIvdD~s~~S~~~~sss~~ee~s~~dy~dvls~i~ 414 (535)
.-+.|.++||-+++|..+| ++|++|||+|+..+++.... ++.++.|-..+|.+-+
T Consensus 258 ~QN~dS~~~~~~e~~E~~e-D~M~~~~i~~~~~D~V~~Sd----~~~~~~~~~~~i~r~r 312 (737)
T KOG3779|consen 258 YQNYDSTDSENDEDGELSE-DSMRSEILDARAQDSVGRSD----NEMCELDPGQFIDRAR 312 (737)
T ss_pred HhccccccccCCccccccc-ccccchhhhccccchhcccc----hhcCCCChHHHHHHHH
Confidence 4567778888888776665 68999999986665554321 2255666667776544
No 62
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=51.15 E-value=42 Score=27.68 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=35.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhc
Q 009396 25 LELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKK 67 (535)
Q Consensus 25 ~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E 67 (535)
..|.-|+.|-+..|-.++.|+++-+..-..|+.|++.|+.+.+
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999998888888999888876543
No 63
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=50.89 E-value=38 Score=28.68 Aligned_cols=54 Identities=19% Similarity=0.390 Sum_probs=45.4
Q ss_pred cchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHH-----hhhhchHHHHHHHHHhhccC
Q 009396 16 KCSELESKCLELESEIEKKKTQFEKLEQKFKELE-----DEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 16 rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~-----~EK~~le~El~~lKr~~E~~ 69 (535)
-|..|..-+.+|+-|++-++.+|..|.+.++.+. ..+..|+++|+.|=..-|.+
T Consensus 11 p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K 69 (79)
T PF06657_consen 11 PGEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAK 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHH
Confidence 3667888999999999999999999999988875 47788999999996655555
No 64
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=50.72 E-value=27 Score=30.79 Aligned_cols=35 Identities=34% Similarity=0.380 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhc
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNG 54 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~ 54 (535)
++.|+.+|+.++.....|++.|..++.-...||.-
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~ 81 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREEKQE 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777666666643
No 65
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=50.62 E-value=63 Score=27.39 Aligned_cols=41 Identities=29% Similarity=0.412 Sum_probs=29.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 26 ELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 26 ~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
.+-.+|-..-.++-.|.+++.+|.+++|.+..++..+++.+
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~ 66 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG 66 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc
Confidence 33445555556667777888888888888888888888776
No 66
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=49.37 E-value=62 Score=37.51 Aligned_cols=87 Identities=36% Similarity=0.460 Sum_probs=43.8
Q ss_pred hhhhhHHHHHHHHHHhhhh-------hHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhh
Q 009396 18 SELESKCLELESEIEKKKT-------QFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQL 90 (535)
Q Consensus 18 ~E~e~r~~~Le~EI~Kk~~-------e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql 90 (535)
.++++.+..|+.+..+... +++.+..+++|.+.-...|+.+|..++..+...|. ||
T Consensus 592 ~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~-----------------ql 654 (769)
T PF05911_consen 592 KELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAET-----------------QL 654 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HH
Confidence 3444455444444433333 55666666666666555566666655555544442 22
Q ss_pred hhh---hhhhhhhhhhhhHHHHHHH-HHHHHhhhh
Q 009396 91 VVE---NKALESGMKRAENEAESLK-KLKELESRV 121 (535)
Q Consensus 91 ~~e---N~~LE~ekk~ae~E~E~wK-k~~eLEs~v 121 (535)
.+. +..||.-.+-+|.|++... |+..||.-+
T Consensus 655 ~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~El 689 (769)
T PF05911_consen 655 KAMKESYESLETRLKDLEAEAEELQSKISSLEEEL 689 (769)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 222 4445555555555555555 555555443
No 67
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=49.05 E-value=46 Score=31.81 Aligned_cols=51 Identities=31% Similarity=0.467 Sum_probs=29.7
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHH-HHhhhhchHHHHHHHHHhhccC
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKE-LEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~ke-l~~EK~~le~El~~lKr~~E~~ 69 (535)
.|+..+..|+.++...+..++.++.++.+ ...+....++|+..||+.+.-+
T Consensus 131 ~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql 182 (189)
T PF10211_consen 131 ELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQL 182 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555566666666654 3444555677777777766544
No 68
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=49.01 E-value=55 Score=38.62 Aligned_cols=9 Identities=22% Similarity=0.682 Sum_probs=4.8
Q ss_pred ceeccCCCC
Q 009396 187 VIDICDSDD 195 (535)
Q Consensus 187 vidi~Dsdd 195 (535)
-+-+.++||
T Consensus 1036 ~L~l~~~dd 1044 (1163)
T COG1196 1036 ELELTEPDD 1044 (1163)
T ss_pred EEEeCCCCc
Confidence 344556565
No 69
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=48.85 E-value=35 Score=28.05 Aligned_cols=30 Identities=43% Similarity=0.593 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELED 50 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~ 50 (535)
++++..|+.+|.+.+.+.+.|+.+++++..
T Consensus 68 ~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 68 EERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555554443
No 70
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=48.20 E-value=31 Score=43.26 Aligned_cols=95 Identities=24% Similarity=0.278 Sum_probs=67.7
Q ss_pred ccchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC-ccc--ccccccccccCCCcchhhh
Q 009396 15 RKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS-EIS--LGVVDLTREGEGDGVAQLV 91 (535)
Q Consensus 15 ~rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~-E~~--~~vvdlt~~~eee~~~Ql~ 91 (535)
-||-||.+++.-|..+|--...++..|.+++-+..++...++.|...+|++.-.+ +.+ .-.-|+++- -
T Consensus 1243 ~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL---------~ 1313 (1822)
T KOG4674|consen 1243 EKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKL---------K 1313 (1822)
T ss_pred HHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH---------H
Confidence 4778888888888888888888899999999999999999999999997765554 431 111222221 2
Q ss_pred hhhhhhhhhhhhhhHHHHHHH-HHHHHh
Q 009396 92 VENKALESGMKRAENEAESLK-KLKELE 118 (535)
Q Consensus 92 ~eN~~LE~ekk~ae~E~E~wK-k~~eLE 118 (535)
=++..|+-|+...++.|+-.+ +|+.|-
T Consensus 1314 ~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1314 SEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 266677777777777777666 555544
No 71
>PRK10884 SH3 domain-containing protein; Provisional
Probab=48.14 E-value=48 Score=32.48 Aligned_cols=14 Identities=14% Similarity=0.411 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHhhh
Q 009396 22 SKCLELESEIEKKK 35 (535)
Q Consensus 22 ~r~~~Le~EI~Kk~ 35 (535)
.|+-.|+.|+.+.+
T Consensus 93 ~rlp~le~el~~l~ 106 (206)
T PRK10884 93 TRVPDLENQVKTLT 106 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 72
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=47.68 E-value=69 Score=33.98 Aligned_cols=85 Identities=27% Similarity=0.431 Sum_probs=52.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhhhhhhHHHH
Q 009396 30 EIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAE 109 (535)
Q Consensus 30 EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ae~E~E 109 (535)
+|-+.-.+.-.|..+...|..|+|.+..+++.++...+. ...|.-+-+.|--+.+..|.++.
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~------------------~~~l~~~~~~l~~~~~~~~~~~~ 90 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGED------------------AEALIAEVKELKEEIKALEAELD 90 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666677777777777777765543321 22355566677777777777776
Q ss_pred HHH-HHHHHhhhhhccccCCCCcc
Q 009396 110 SLK-KLKELESRVSNEALEGTPSK 132 (535)
Q Consensus 110 ~wK-k~~eLEs~vl~l~~~gTp~~ 132 (535)
... ++.++=+++=++-.|.+|+-
T Consensus 91 ~~~~~~~~~~~~iPN~~~~~vP~g 114 (425)
T PRK05431 91 ELEAELEELLLRIPNLPHDSVPVG 114 (425)
T ss_pred HHHHHHHHHHHhCCCCCCccCCCC
Confidence 666 77776666666667777653
No 73
>PRK04863 mukB cell division protein MukB; Provisional
Probab=47.57 E-value=33 Score=42.11 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCccc---ccccccccccC-------CCcchhh
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEIS---LGVVDLTREGE-------GDGVAQL 90 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~---~~vvdlt~~~e-------ee~~~Ql 90 (535)
++++.+++.++++...+...|+.++.++..+...++.++..+....+.++.. -|+-+||.+.= +..+.++
T Consensus 375 eeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~ 454 (1486)
T PRK04863 375 DEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEA 454 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666666666666666665555555443 44457777661 3334444
Q ss_pred hhhhhhhhhhhhhhhHHHH
Q 009396 91 VVENKALESGMKRAENEAE 109 (535)
Q Consensus 91 ~~eN~~LE~ekk~ae~E~E 109 (535)
.-+=..||-+...++.+++
T Consensus 455 e~qL~elE~kL~~lea~le 473 (1486)
T PRK04863 455 TEELLSLEQKLSVAQAAHS 473 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 74
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=47.37 E-value=34 Score=35.38 Aligned_cols=43 Identities=35% Similarity=0.477 Sum_probs=24.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhc
Q 009396 25 LELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKK 67 (535)
Q Consensus 25 ~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E 67 (535)
..|+..+.+.+.+++.|+.++++|..+.+.+..+++.++.+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELE 46 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555666666666666666666666666655444
No 75
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=47.20 E-value=51 Score=32.25 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhc
Q 009396 23 KCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKK 67 (535)
Q Consensus 23 r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E 67 (535)
.|..|+.||.+.+.+.......+.+|-.-|..|+-|+...++-.|
T Consensus 263 ~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 263 EIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 344455555555555555555555555555555555555555433
No 76
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=47.17 E-value=19 Score=35.89 Aligned_cols=35 Identities=29% Similarity=0.531 Sum_probs=29.7
Q ss_pred hhhcccchhhhhHHHHHHHHHHhhhhhHHHHHHHH
Q 009396 11 MVESRKCSELESKCLELESEIEKKKTQFEKLEQKF 45 (535)
Q Consensus 11 ~~~~~rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~ 45 (535)
..-+.||.+||.||-.|+++|..|-.=.--|+++-
T Consensus 132 ~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs 166 (205)
T PF12240_consen 132 HMANRKCQEMENRIKALHAQIAEKDAMIKVLQQRS 166 (205)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35689999999999999999999988777777653
No 77
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=45.91 E-value=77 Score=25.90 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
||+||..||.-|.=..--.+.|-.-..+...+...|+..|+.|..+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777766665555555555555555555555666666664433
No 78
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=45.39 E-value=31 Score=33.13 Aligned_cols=45 Identities=40% Similarity=0.491 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhhhchHHHHHHHHHh
Q 009396 20 LESKCLELESEIEKKKTQ-FEKLEQKFKELEDEKNGIEEELKALKRE 65 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e-~E~LE~K~kel~~EK~~le~El~~lKr~ 65 (535)
||+|+..+|++.+-...- -.-|+.+|++|+ ....++.||..||..
T Consensus 171 ~e~ki~~~ea~aea~~~~~~~~l~~~l~~l~-~~~~vd~eLa~LK~~ 216 (219)
T TIGR02977 171 YERRVDELEAQAESYDLGRKPSLEDEFAELE-ADDEIERELAALKAK 216 (219)
T ss_pred HHHHHHHHHHHHHHhhccCCCCHHHHHHHhc-CCChHHHHHHHHHhh
Confidence 688998888887765311 113999999998 467899999999974
No 79
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=45.29 E-value=30 Score=43.63 Aligned_cols=50 Identities=30% Similarity=0.469 Sum_probs=38.0
Q ss_pred ccchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 15 RKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 15 ~rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
-.|.+|++.+..+|..++|-..|++.++.+.+.|+.|.+.+++-+..|-+
T Consensus 936 ~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~k 985 (1930)
T KOG0161|consen 936 QEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSK 985 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777788888888888888888888888888887777776666633
No 80
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=44.51 E-value=67 Score=30.77 Aligned_cols=94 Identities=28% Similarity=0.397 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHH------hhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhh
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELE------DEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVEN 94 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~------~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN 94 (535)
+.++..|..+|++.+.+...|+.++.++. .|+..+-.+|+.|+.+++.+....- --.....+.|.
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~---~~~~~Dp~~i~------ 138 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE---KYSENDPEKIE------ 138 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCHHHHH------
Confidence 45556666666666666666665555443 3445555666666655555421000 00001111122
Q ss_pred hhhhhhhhhhhHHHHHHH-HHHHHhhhhhcc
Q 009396 95 KALESGMKRAENEAESLK-KLKELESRVSNE 124 (535)
Q Consensus 95 ~~LE~ekk~ae~E~E~wK-k~~eLEs~vl~l 124 (535)
.+..+...+-..+..|- -.--|.+|+.+-
T Consensus 139 -~~~~~~~~~~~~anrwTDNI~~l~~~~~~k 168 (188)
T PF03962_consen 139 -KLKEEIKIAKEAANRWTDNIFSLKSYLKKK 168 (188)
T ss_pred -HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 23455667778889999 999999998874
No 81
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.37 E-value=38 Score=38.63 Aligned_cols=69 Identities=28% Similarity=0.365 Sum_probs=38.9
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhhhhhhHHHHH
Q 009396 31 IEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAES 110 (535)
Q Consensus 31 I~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ae~E~E~ 110 (535)
|.-...+...|+.+...|+.|-..|+.+|..+|++.+-++ =+|+--+.+-+.+.
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~--------------------------~~l~~~~r~~~~~~ 470 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLE--------------------------SELERFRREVRDKV 470 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHH
Confidence 3334445556666666666666666666666666555443 23333344444666
Q ss_pred HH--HHHHHhhhhhccc
Q 009396 111 LK--KLKELESRVSNEA 125 (535)
Q Consensus 111 wK--k~~eLEs~vl~l~ 125 (535)
|+ ++..++.++-.|+
T Consensus 471 ~~~rei~~~~~~I~~L~ 487 (652)
T COG2433 471 RKDREIRARDRRIERLE 487 (652)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 66 5555666665554
No 82
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=43.81 E-value=17 Score=39.89 Aligned_cols=8 Identities=25% Similarity=0.713 Sum_probs=4.7
Q ss_pred CCCCCHHH
Q 009396 401 DSDMDFDE 408 (535)
Q Consensus 401 ~s~~dy~d 408 (535)
|++.+|++
T Consensus 104 DnE~GFAd 111 (458)
T PF10446_consen 104 DNEAGFAD 111 (458)
T ss_pred cccccccc
Confidence 55666654
No 83
>PLN02678 seryl-tRNA synthetase
Probab=43.81 E-value=85 Score=34.08 Aligned_cols=85 Identities=21% Similarity=0.331 Sum_probs=53.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhhhhhhHHH
Q 009396 29 SEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEA 108 (535)
Q Consensus 29 ~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ae~E~ 108 (535)
.+|-+.-.++-.|..++.+|.+|+|.+..++..+++..+..+ .|+-+=+.|--+.+..|.++
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~------------------~l~~~~~~Lk~ei~~le~~~ 94 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDAT------------------ELIAETKELKKEITEKEAEV 94 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHH------------------HHHHHHHHHHHHHHHHHHHH
Confidence 456666667777888888888889999888888766543321 23333444555555555555
Q ss_pred HHHH-HHHHHhhhhhccccCCCCc
Q 009396 109 ESLK-KLKELESRVSNEALEGTPS 131 (535)
Q Consensus 109 E~wK-k~~eLEs~vl~l~~~gTp~ 131 (535)
...+ ++.++=+++=++-.|.+|+
T Consensus 95 ~~~~~~l~~~~~~iPNi~~~~VP~ 118 (448)
T PLN02678 95 QEAKAALDAKLKTIGNLVHDSVPV 118 (448)
T ss_pred HHHHHHHHHHHHhCCCCCCccCCC
Confidence 5555 5555555555555565654
No 84
>PHA02562 46 endonuclease subunit; Provisional
Probab=43.79 E-value=85 Score=32.93 Aligned_cols=26 Identities=12% Similarity=0.364 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHH
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFK 46 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~k 46 (535)
+.|++.|..+|...+.+.+.|+.+..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554444
No 85
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.69 E-value=86 Score=28.73 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=4.3
Q ss_pred hhhhhhHHHH
Q 009396 100 GMKRAENEAE 109 (535)
Q Consensus 100 ekk~ae~E~E 109 (535)
|+.+++.+..
T Consensus 146 e~~~~~~~~~ 155 (169)
T PF07106_consen 146 EKEKLEKEYK 155 (169)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 86
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=42.96 E-value=60 Score=31.45 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 23 KCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 23 r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
.-..|+.|+.+.+.+++.|+.+...|..+...++++-+.|-.+-
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556667777777777777777777777777777777775443
No 87
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=42.72 E-value=49 Score=34.84 Aligned_cols=45 Identities=33% Similarity=0.330 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
++++...|+.+++..+.+++.|+.+.+.+..|...+++||+.|+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 20 LYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 355556666666666666666666666666666666666666654
No 88
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=42.70 E-value=68 Score=36.23 Aligned_cols=88 Identities=26% Similarity=0.410 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhh
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALES 99 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ 99 (535)
|++-++.+-..|++...-|-.|+..+++++.....++.+--...... +.|+-
T Consensus 359 l~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L----------------------------~~Lrk 410 (570)
T COG4477 359 LESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHL----------------------------TSLRK 410 (570)
T ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----------------------------HHHHH
Confidence 34444555556666666666666666666555555544332222111 23344
Q ss_pred hhhhhhHHHHHHH-HHHHHhhhhhccccCCCCcceee
Q 009396 100 GMKRAENEAESLK-KLKELESRVSNEALEGTPSKHII 135 (535)
Q Consensus 100 ekk~ae~E~E~wK-k~~eLEs~vl~l~~~gTp~~y~~ 135 (535)
+-..|.-..+..+ +.-++=.++.+-++||.|..|+.
T Consensus 411 dEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~ 447 (570)
T COG4477 411 DELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLS 447 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Confidence 4455777788888 99999999999999999998765
No 89
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=42.32 E-value=1.7e+02 Score=28.46 Aligned_cols=35 Identities=34% Similarity=0.392 Sum_probs=29.0
Q ss_pred CCcchhhhhhhhhhhhhhhhhhHHHHHHH-HHHHHh
Q 009396 84 GDGVAQLVVENKALESGMKRAENEAESLK-KLKELE 118 (535)
Q Consensus 84 ee~~~Ql~~eN~~LE~ekk~ae~E~E~wK-k~~eLE 118 (535)
+....+++-+|..+|..-...|+||+..| +-.+++
T Consensus 181 e~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 181 EQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567789999999999999999999998 666654
No 90
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=42.11 E-value=47 Score=30.21 Aligned_cols=52 Identities=27% Similarity=0.447 Sum_probs=45.8
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 18 SELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 18 ~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
.-+|.|+++|+..-.+.--....+-.+++.++..+..+.+|+..|+++--..
T Consensus 38 L~lE~rvleLel~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~a~ 89 (108)
T PF14739_consen 38 LRLENRVLELELHGDKAAPQIADLRHRLAEAQEDRQELQEEYVSLKKNYQAL 89 (108)
T ss_pred HHHHHHHHHHHhhcchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999999998755444
No 91
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=42.02 E-value=74 Score=29.08 Aligned_cols=18 Identities=44% Similarity=0.595 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHhhhh
Q 009396 19 ELESKCLELESEIEKKKT 36 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~ 36 (535)
.||-||..||.|+.|+|+
T Consensus 4 QmElrIkdLeselsk~Kt 21 (111)
T PF12001_consen 4 QMELRIKDLESELSKMKT 21 (111)
T ss_pred HHHHHHHHHHHHHHHhHh
Confidence 578899999999999994
No 92
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=41.90 E-value=1e+02 Score=35.62 Aligned_cols=36 Identities=33% Similarity=0.364 Sum_probs=22.5
Q ss_pred hhhhhhccccccccc------ccCCcCCCCCCCCCccCCccc
Q 009396 152 RGRQVRKNLAFEEDR------SLGKKMAPSTPGGVRTASSGV 187 (535)
Q Consensus 152 ~~~~Vrk~LsFee~~------~~~kk~apstp~g~~~~~~~v 187 (535)
--||||.|.-=+++| |+-.|.---|||.+-..-.+|
T Consensus 517 QYrqVreHV~keDGRvqA~GWSLP~kykq~t~gq~e~~mknv 558 (832)
T KOG2077|consen 517 QYRQVREHVQKEDGRVQAFGWSLPQKYKQVTNGQGENKMKNV 558 (832)
T ss_pred HHHHHHHHhhccccceeeeccccchhhhccCCCccccccccC
Confidence 347899999888876 444444455666555444443
No 93
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.48 E-value=88 Score=35.92 Aligned_cols=32 Identities=34% Similarity=0.425 Sum_probs=18.8
Q ss_pred chh-hhhhhhhhhhhhhhhhHHHHHHH--------HHHHHh
Q 009396 87 VAQ-LVVENKALESGMKRAENEAESLK--------KLKELE 118 (535)
Q Consensus 87 ~~Q-l~~eN~~LE~ekk~ae~E~E~wK--------k~~eLE 118 (535)
++| +.=-|-.+|.+..|.-+|+--+| -|-|||
T Consensus 136 ~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELE 176 (772)
T KOG0999|consen 136 VHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELE 176 (772)
T ss_pred HHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 34445567777777666665554 366666
No 94
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=41.29 E-value=86 Score=28.08 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=41.2
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
+|=+++..||..|+..-.+++.|.....+|..|-+.|.-|...|++.....
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678888888888888889999999999999988888888887754433
No 95
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=40.91 E-value=53 Score=28.14 Aligned_cols=31 Identities=32% Similarity=0.494 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELED 50 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~ 50 (535)
|++|+..|+.+|.+...+++.|+.+++++..
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666665555555555555555443
No 96
>PRK02119 hypothetical protein; Provisional
Probab=40.89 E-value=1e+02 Score=25.80 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
.||+|+..||.-|-=-.--.+.|-.-..+...+...|+..|+.|..+.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888877766666666666666666666666666777665433
No 97
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=40.52 E-value=53 Score=27.09 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=18.6
Q ss_pred chhhhhHHHHHHHHHHhhhhhHHH
Q 009396 17 CSELESKCLELESEIEKKKTQFEK 40 (535)
Q Consensus 17 C~E~e~r~~~Le~EI~Kk~~e~E~ 40 (535)
-.||++||..|++||...+.+...
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999877665443
No 98
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=40.21 E-value=60 Score=25.04 Aligned_cols=31 Identities=32% Similarity=0.469 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDE 51 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~E 51 (535)
..++..|+.+++....++..|+++...|..|
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456788888888889999999888888765
No 99
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=40.02 E-value=20 Score=32.64 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=47.2
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcc-----cccccccccccCCCcchhhhh
Q 009396 18 SELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEI-----SLGVVDLTREGEGDGVAQLVV 92 (535)
Q Consensus 18 ~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~-----~~~vvdlt~~~eee~~~Ql~~ 92 (535)
.+++.|+-.|+-+|+.-|...+.|-..-.+ |+.=++.|+.++....+ +.-|.|+-+.=+.++++-+-+
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~-------L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l 84 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQ-------LRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLEL 84 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888777666333333 33333333333322211 222333333334566777777
Q ss_pred hhhhhhhhhhhhhHHH
Q 009396 93 ENKALESGMKRAENEA 108 (535)
Q Consensus 93 eN~~LE~ekk~ae~E~ 108 (535)
++.-+.++|.+|.=|.
T Consensus 85 ~~r~~k~~~dka~lel 100 (107)
T PF09304_consen 85 ESRLLKAQKDKAILEL 100 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHH
Confidence 7777777777776554
No 100
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=39.56 E-value=66 Score=28.35 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELED 50 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~ 50 (535)
+++.++.+++.|+++.+.+++.|+++.+.|..
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455555555555555555555555554444
No 101
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=39.43 E-value=55 Score=28.43 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDE 51 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~E 51 (535)
|++|+..++..|.+.....+.|+.++++++..
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777776666666666666666554
No 102
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=39.27 E-value=73 Score=38.39 Aligned_cols=103 Identities=28% Similarity=0.408 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccC-----------------
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGE----------------- 83 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~e----------------- 83 (535)
++|+..|..+|.++...++.+.+|+.+.+++...+-+|.+.-+++++..-. -|.|+-++.+
T Consensus 294 qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~--~~~~~~re~~~~~~~~~~~~n~i~~~k 371 (1074)
T KOG0250|consen 294 QEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARK--DLDDLRREVNDLKEEIREIENSIRKLK 371 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888888888888887777777777776666555544311 1111111110
Q ss_pred ------CCcchhhh-hhhhhhhhhhhhhhHHHHHHH-HHHHHhhhhhccc
Q 009396 84 ------GDGVAQLV-VENKALESGMKRAENEAESLK-KLKELESRVSNEA 125 (535)
Q Consensus 84 ------ee~~~Ql~-~eN~~LE~ekk~ae~E~E~wK-k~~eLEs~vl~l~ 125 (535)
+.-|+-+. =.|+.+..+....|.++++.+ .-..||.-+.+|.
T Consensus 372 ~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~ 421 (1074)
T KOG0250|consen 372 KEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLR 421 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011100 014666667777777777777 6666666555554
No 103
>PRK02793 phi X174 lysis protein; Provisional
Probab=38.25 E-value=1.2e+02 Score=25.30 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=31.5
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
+||.||..||.-|-=-..-.+.|-.-..+...+...++..|+.|+.+.
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888777766655566666666666666666667777775433
No 104
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.22 E-value=66 Score=38.42 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=34.3
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
.|+.++.+|..+|+....+...++.+...|..++..++.++..++..++..
T Consensus 885 ~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1311)
T TIGR00606 885 QFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETS 935 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777777777777776665544444
No 105
>smart00338 BRLZ basic region leucin zipper.
Probab=37.95 E-value=63 Score=25.45 Aligned_cols=36 Identities=39% Similarity=0.685 Sum_probs=23.7
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhc
Q 009396 32 EKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKK 67 (535)
Q Consensus 32 ~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E 67 (535)
+||+.....||.+...|..+...|..++..|..++.
T Consensus 22 ~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 22 ERKKAEIEELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777777666666666665543
No 106
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=37.75 E-value=80 Score=27.87 Aligned_cols=37 Identities=27% Similarity=0.529 Sum_probs=17.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 30 EIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 30 EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
.++..+.++..+..+.+.+........++++.||+++
T Consensus 81 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 81 QLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333444444444444444444556666666654
No 107
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=37.50 E-value=58 Score=33.68 Aligned_cols=51 Identities=29% Similarity=0.371 Sum_probs=45.1
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhcc
Q 009396 18 SELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKG 68 (535)
Q Consensus 18 ~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~ 68 (535)
..|++++..|+.++++.++.+..|+.+.+.+..+...++.+++.++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLI 54 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCce
Confidence 357888899999999999999999999999999999999999999874433
No 108
>PRK04406 hypothetical protein; Provisional
Probab=37.47 E-value=1.2e+02 Score=25.61 Aligned_cols=48 Identities=15% Similarity=0.273 Sum_probs=30.9
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
.||+||..||.-|-=-.--.+.|-.-..+...+...|+..|+.|+.+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788887777666555566666666666666666666666665443
No 109
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.29 E-value=63 Score=25.31 Aligned_cols=34 Identities=24% Similarity=0.464 Sum_probs=18.2
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 31 IEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 31 I~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
+..++.++..|+.+.+++..+...|+.+++.|+.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344445555555555555555555555555533
No 110
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.99 E-value=2e+02 Score=28.34 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=10.7
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHH
Q 009396 90 LVVENKALESGMKRAENEAESLK 112 (535)
Q Consensus 90 l~~eN~~LE~ekk~ae~E~E~wK 112 (535)
|.=+|..|.-+...+.+|++..+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555444444444444433
No 111
>PRK01156 chromosome segregation protein; Provisional
Probab=36.91 E-value=2e+02 Score=32.63 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHH-hhccCccccccccccccc-CCCcchhh
Q 009396 38 FEKLEQKFKELEDEKNGIEEELKALKR-EKKGSEISLGVVDLTREG-EGDGVAQL 90 (535)
Q Consensus 38 ~E~LE~K~kel~~EK~~le~El~~lKr-~~E~~E~~~~vvdlt~~~-eee~~~Ql 90 (535)
++.|+.+..+|..++..+..+++.|+. .++ +. ..++|-+..+. .++....+
T Consensus 418 ~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~-l~-~~~~Cp~c~~~~~~e~~~e~ 470 (895)
T PRK01156 418 LQDISSKVSSLNQRIRALRENLDELSRNMEM-LN-GQSVCPVCGTTLGEEKSNHI 470 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hc-cCCCCCCCCCcCChhhHHHH
Confidence 444455555555555555555555543 222 22 34566655544 25555555
No 112
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.85 E-value=89 Score=37.06 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=28.0
Q ss_pred chhhhhHHHHHHHHHHhhhh-------hHHHHHHHHHHHHhhhhchHHHHHHHHHhhc
Q 009396 17 CSELESKCLELESEIEKKKT-------QFEKLEQKFKELEDEKNGIEEELKALKREKK 67 (535)
Q Consensus 17 C~E~e~r~~~Le~EI~Kk~~-------e~E~LE~K~kel~~EK~~le~El~~lKr~~E 67 (535)
|-.+..-|.+|-.+|+..+. |+|.|+.+...+.+++..+.+++..||.+..
T Consensus 659 ~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 659 QQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455556666666655443 4455555555555555555555555555443
No 113
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=35.80 E-value=89 Score=31.79 Aligned_cols=28 Identities=32% Similarity=0.526 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKEL 48 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel 48 (535)
..++..+..+|+.++.+...|+.++.++
T Consensus 215 r~eL~~~~~~i~~~k~~l~el~~el~~l 242 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAELQEELEEL 242 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444444333333
No 114
>PRK01156 chromosome segregation protein; Provisional
Probab=35.64 E-value=60 Score=36.55 Aligned_cols=33 Identities=12% Similarity=0.284 Sum_probs=15.8
Q ss_pred cchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 009396 16 KCSELESKCLELESEIEKKKTQFEKLEQKFKEL 48 (535)
Q Consensus 16 rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel 48 (535)
.|-+++.++.++..+|.....+++.|+.+++++
T Consensus 581 ~~~~~~~~l~e~~~~l~~l~~~l~~le~~~~~~ 613 (895)
T PRK01156 581 DIETNRSRSNEIKKQLNDLESRLQEIEIGFPDD 613 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Confidence 344444455555555555555555555444433
No 115
>PRK11637 AmiB activator; Provisional
Probab=35.60 E-value=86 Score=32.70 Aligned_cols=42 Identities=10% Similarity=0.255 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHH
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKAL 62 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~l 62 (535)
+..+..|+.+|.+...++..++++++++..+...++.++..+
T Consensus 74 ~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 74 LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444333
No 116
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=35.20 E-value=1.1e+02 Score=31.50 Aligned_cols=111 Identities=18% Similarity=0.291 Sum_probs=80.2
Q ss_pred ccchhhhhHHHHHHHHHHhhhhhHHHHHH-----------HHHH----HHhhhhchHHHHHHHHHhhccC----cc----
Q 009396 15 RKCSELESKCLELESEIEKKKTQFEKLEQ-----------KFKE----LEDEKNGIEEELKALKREKKGS----EI---- 71 (535)
Q Consensus 15 ~rC~E~e~r~~~Le~EI~Kk~~e~E~LE~-----------K~ke----l~~EK~~le~El~~lKr~~E~~----E~---- 71 (535)
.+=..|+..+..|.+.|+|..-|..+|-+ +.+. +..-|..-++||-+|.+.+... +.
T Consensus 81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~ 160 (258)
T PF15397_consen 81 SKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQE 160 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778889999999998888877753 3333 3344555667777775532211 11
Q ss_pred -----cccccccccccCCCcchhhhhhhhhhhhhhhhhhHHHHHHH-HHHHHhhhhhccc
Q 009396 72 -----SLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAESLK-KLKELESRVSNEA 125 (535)
Q Consensus 72 -----~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ae~E~E~wK-k~~eLEs~vl~l~ 125 (535)
..-++..+...=...+.|.+.+|.++..|+-+--.+|+-|+ ..-.|..-|-+|.
T Consensus 161 k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 161 KKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24456666666677899999999999999999999999999 8889988888776
No 117
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=35.15 E-value=1.2e+02 Score=27.53 Aligned_cols=50 Identities=18% Similarity=0.247 Sum_probs=42.1
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhcc
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKG 68 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~ 68 (535)
+|=+++..||..|+..-.+++.|.+...+|..|-+.|+-|-..|++....
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888999999999999999999999999999999998888775543
No 118
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=34.93 E-value=29 Score=40.64 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCHHHHH
Q 009396 393 DASSGAQDDSDMDFDEIL 410 (535)
Q Consensus 393 ~sss~~ee~s~~dy~dvl 410 (535)
+.+.+++|++--||+++=
T Consensus 920 de~~~sdEE~gkdwdele 937 (960)
T KOG1189|consen 920 DEDLESDEESGKDWDELE 937 (960)
T ss_pred cccccchhhhccchhhhH
Confidence 344444444556666653
No 119
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=34.79 E-value=84 Score=39.99 Aligned_cols=100 Identities=28% Similarity=0.396 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcc------------cccccccccccCCCcch
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEI------------SLGVVDLTREGEGDGVA 88 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~------------~~~vvdlt~~~eee~~~ 88 (535)
++-+..|..+++|.++....||.+...+..|++.++.+|..=+......+. ..-+-++ .+.+-
T Consensus 844 ~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~-----~~~~e 918 (1930)
T KOG0161|consen 844 EEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKEL-----KERLE 918 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 455566677777777777888888888888888888886654433222211 1111111 12222
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHH-HHHHHhhhhhccc
Q 009396 89 QLVVENKALESGMKRAENEAESLK-KLKELESRVSNEA 125 (535)
Q Consensus 89 Ql~~eN~~LE~ekk~ae~E~E~wK-k~~eLEs~vl~l~ 125 (535)
+.-=+|..||.+++.++.|++-.+ .+.++|.-...+.
T Consensus 919 ~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~ 956 (1930)
T KOG0161|consen 919 EEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLE 956 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467778888888888888887 7777776655544
No 120
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=34.68 E-value=58 Score=31.45 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=17.3
Q ss_pred chhhhhhhhhhhhhhhhhhHHHHHHH-HHH
Q 009396 87 VAQLVVENKALESGMKRAENEAESLK-KLK 115 (535)
Q Consensus 87 ~~Ql~~eN~~LE~ekk~ae~E~E~wK-k~~ 115 (535)
+-.|-.++.+|+.--.+.+.|-..|. +|.
T Consensus 102 l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 102 LKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666666 554
No 121
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=34.22 E-value=66 Score=30.00 Aligned_cols=36 Identities=28% Similarity=0.519 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchH
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIE 56 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le 56 (535)
|--+..|++|+..|.+|...|..++.++......|+
T Consensus 93 E~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 93 EIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444556666666666666666666666655444443
No 122
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=33.65 E-value=1.5e+02 Score=24.16 Aligned_cols=47 Identities=17% Similarity=0.422 Sum_probs=31.8
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHh
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKRE 65 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~ 65 (535)
++++|+..++..+.........||+.-+..+.....+...|++++..
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777766666777777777766666666666666543
No 123
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=33.15 E-value=1.6e+02 Score=25.25 Aligned_cols=49 Identities=27% Similarity=0.374 Sum_probs=38.0
Q ss_pred cchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhc
Q 009396 16 KCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKK 67 (535)
Q Consensus 16 rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E 67 (535)
.+.++|.++..--.|++-.+.-.-.||..|..+. ..-|+|++.||++.+
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK---~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK---QQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 5667777777777788887777778888887764 456999999998765
No 124
>PRK03918 chromosome segregation protein; Provisional
Probab=32.91 E-value=1.9e+02 Score=32.21 Aligned_cols=53 Identities=17% Similarity=0.301 Sum_probs=26.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccc
Q 009396 29 SEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTRE 81 (535)
Q Consensus 29 ~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~ 81 (535)
.+|+....+...|..++.++..++..++.+++.|+...+.++...++|-+-+.
T Consensus 391 ~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~c~~ 443 (880)
T PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGR 443 (880)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 33333333344455555666666666666666665443333323455555333
No 125
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=32.59 E-value=47 Score=30.69 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=30.2
Q ss_pred hcccchhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 009396 13 ESRKCSELESKCLELESEIEKKKTQFEKLEQKFKE 47 (535)
Q Consensus 13 ~~~rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~ke 47 (535)
+|+-+...|+|+..+|.-||+..+..-.||+|+.-
T Consensus 12 LN~F~~~cE~kL~~~e~~Lq~~E~~l~iLEaKL~S 46 (148)
T PF10152_consen 12 LNRFASVCEEKLSDMEQRLQRLEATLNILEAKLSS 46 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56666677999999999999999999999999854
No 126
>PF13846 DUF4196: Domain of unknown function (DUF4196)
Probab=32.56 E-value=33 Score=31.68 Aligned_cols=43 Identities=26% Similarity=0.399 Sum_probs=28.1
Q ss_pred ccccccccccCCCcccc-CccccccccccccCCCCCCCCchhHHHHhhh
Q 009396 242 YSYEENVETCNDSVPVV-TPKRKQASNIVTSDTESDEDDVPICKLKRRN 289 (535)
Q Consensus 242 ~~~~Ed~~~~~~nvp~v-t~~RKra~~vVaSd~esDdD~iPI~~lk~~~ 289 (535)
|.-+||++ --++ --||||..-|.-.-++|||-.|++++|--+.
T Consensus 44 qiieED~E-----EE~Ik~gkRkr~SSvm~DSDdSdDSDilvrkv~~KR 87 (112)
T PF13846_consen 44 QIIEEDLE-----EEHIKRGKRKRLSSVMYDSDDSDDSDILVRKVGAKR 87 (112)
T ss_pred ceeccccc-----hhhhcccccceeeeeeecCCccccchhhhhhhhccc
Confidence 55567777 2345 4567776665544446688999999987554
No 127
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=32.49 E-value=79 Score=30.75 Aligned_cols=44 Identities=27% Similarity=0.242 Sum_probs=38.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCc
Q 009396 27 LESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSE 70 (535)
Q Consensus 27 Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E 70 (535)
|..+|+|...+++.|+.+++.|..+...++++.+.|..+.+.-.
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~rar 152 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRAR 152 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999977654443
No 128
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=32.39 E-value=60 Score=34.18 Aligned_cols=38 Identities=32% Similarity=0.490 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHhhhhhHHH--------HHHHHHHHHhhhhchHHHH
Q 009396 22 SKCLELESEIEKKKTQFEK--------LEQKFKELEDEKNGIEEEL 59 (535)
Q Consensus 22 ~r~~~Le~EI~Kk~~e~E~--------LE~K~kel~~EK~~le~El 59 (535)
+||..|..|-+..-..|+. |..|+..|..||..+++-|
T Consensus 84 Kkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~L 129 (310)
T PF09755_consen 84 KKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQL 129 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655555444433 6677777777777666544
No 129
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=31.88 E-value=2.1e+02 Score=24.91 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=35.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCccccccccccccc-------CCCcchhhhhhhhhhhh
Q 009396 27 LESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREG-------EGDGVAQLVVENKALES 99 (535)
Q Consensus 27 Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~-------eee~~~Ql~~eN~~LE~ 99 (535)
|...+++.+.+.+.|++.+..+......++.=+..|+.--.......++|.++... ..+.|.--+--|.-+|.
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~ 83 (129)
T cd00584 4 LAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEK 83 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEe
Confidence 44444555555555555555555444444433333333211112255677776643 22333333444555555
Q ss_pred hhhhh
Q 009396 100 GMKRA 104 (535)
Q Consensus 100 ekk~a 104 (535)
....|
T Consensus 84 ~~~eA 88 (129)
T cd00584 84 DLEEA 88 (129)
T ss_pred cHHHH
Confidence 44433
No 130
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=31.25 E-value=90 Score=32.50 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=26.2
Q ss_pred cCCccceeccCCCCCCCccccccccCCcceEEeccCCCC
Q 009396 182 TASSGVIDICDSDDEPDVPHLLSIFGDKNIYISTDHPAE 220 (535)
Q Consensus 182 ~~~~~vidi~DsddE~d~~~i~~~~g~~~v~is~Dh~~~ 220 (535)
.-++.+.|.-+++.+++|--+-.---.--.||+||-+-+
T Consensus 198 n~~p~~l~~l~~~~~~~Is~~~~lt~~~~~c~~~dl~~~ 236 (292)
T KOG4005|consen 198 NPLPTLLDMLGVDEEFDISRLEELTESLLACITADLETG 236 (292)
T ss_pred CCcHHHHHHHccchhhhHHHHHHHHHHHHHHhhhccccc
Confidence 356788899999999998765222122335889987543
No 131
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.14 E-value=1.8e+02 Score=35.23 Aligned_cols=42 Identities=29% Similarity=0.511 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHhhhhhHHH----HHHHHHHHHhhhhchHHHHHH
Q 009396 20 LESKCLELESEIEKKKTQFEK----LEQKFKELEDEKNGIEEELKA 61 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~----LE~K~kel~~EK~~le~El~~ 61 (535)
+++++.++++-|.+|.+||+. |++++.+||++|.-+..-||-
T Consensus 1006 ~~ek~ee~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl~~ 1051 (1243)
T KOG0971|consen 1006 VQEKLEETQALLRKKEKEFEETMDALQADIDQLESEKAELKQRLNS 1051 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 488899999999999999984 899999999999888777655
No 132
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=31.05 E-value=1.6e+02 Score=32.96 Aligned_cols=16 Identities=44% Similarity=0.607 Sum_probs=11.8
Q ss_pred HHHHH-HHHHHhhhhhc
Q 009396 108 AESLK-KLKELESRVSN 123 (535)
Q Consensus 108 ~E~wK-k~~eLEs~vl~ 123 (535)
--+|. |++++|-+-..
T Consensus 412 q~vw~~kl~~~~e~~~~ 428 (493)
T KOG0804|consen 412 QDVWRGKLKELEEREKE 428 (493)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35799 99999876543
No 133
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=30.23 E-value=1.8e+02 Score=24.46 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=35.0
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHH
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELK 60 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~ 60 (535)
.||.|++.|-.--+..+.||..|-+....+.+|...|-+-..
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999998888877655433
No 134
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=30.13 E-value=1.2e+02 Score=31.12 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=15.2
Q ss_pred hHHHHHHH-HHHHHhhhhhccc
Q 009396 105 ENEAESLK-KLKELESRVSNEA 125 (535)
Q Consensus 105 e~E~E~wK-k~~eLEs~vl~l~ 125 (535)
..|..-|. ....|+.....|-
T Consensus 290 ~~E~~RW~~~~~~l~~~~~~l~ 311 (344)
T PF12777_consen 290 SGEKERWSEQIEELEEQLKNLV 311 (344)
T ss_dssp HHHHHCCHCHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHhcccH
Confidence 45777788 8888877766654
No 135
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.63 E-value=1.5e+02 Score=33.80 Aligned_cols=38 Identities=21% Similarity=0.432 Sum_probs=30.4
Q ss_pred CCCcchhhhhhhhhhhhhhhhhhHHHHHHH-HHHHHhhh
Q 009396 83 EGDGVAQLVVENKALESGMKRAENEAESLK-KLKELESR 120 (535)
Q Consensus 83 eee~~~Ql~~eN~~LE~ekk~ae~E~E~wK-k~~eLEs~ 120 (535)
..+-+-+.+-|+..|.-+.-++..+.+.|- +..++++-
T Consensus 330 S~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~ 368 (581)
T KOG0995|consen 330 SGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLE 368 (581)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344466788999999999999999999887 66666663
No 136
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=29.46 E-value=91 Score=27.53 Aligned_cols=40 Identities=30% Similarity=0.459 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHH
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELK 60 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~ 60 (535)
-.-+..|+.+++....+.+.|+.+.+++.++...+..|+|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~k 118 (118)
T PF13815_consen 79 SSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKESK 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456777777777777777777777777777777776653
No 137
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=29.32 E-value=78 Score=27.35 Aligned_cols=30 Identities=17% Similarity=0.399 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 40 KLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 40 ~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
.|+..+..|...+..|+.+|.+...++..+
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~L 65 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRL 65 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Confidence 444445555555555555554444444333
No 138
>PRK00295 hypothetical protein; Provisional
Probab=29.18 E-value=2e+02 Score=23.74 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
||+||..||.-|-=-.--.+.|-.-..+...+...|+..|+.|..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566776666655544444444544444444444555555555544
No 139
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=29.14 E-value=1.3e+02 Score=29.37 Aligned_cols=43 Identities=28% Similarity=0.354 Sum_probs=20.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhc
Q 009396 25 LELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKK 67 (535)
Q Consensus 25 ~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E 67 (535)
..|..+|...+.|.+.|+...+.++......+.++..|+++.+
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444455555555544333
No 140
>PHA02562 46 endonuclease subunit; Provisional
Probab=28.94 E-value=2.6e+02 Score=29.50 Aligned_cols=27 Identities=15% Similarity=-0.027 Sum_probs=13.7
Q ss_pred chhhhhhhhhhhhhhhhhhHHHHHHHH
Q 009396 87 VAQLVVENKALESGMKRAENEAESLKK 113 (535)
Q Consensus 87 ~~Ql~~eN~~LE~ekk~ae~E~E~wKk 113 (535)
+.+|.-+=..+..++...+.|...|+.
T Consensus 381 l~~l~~~l~~~~~~~~~~~ke~~~~~~ 407 (562)
T PHA02562 381 LAKLQDELDKIVKTKSELVKEKYHRGI 407 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555543
No 141
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=28.91 E-value=2.3e+02 Score=33.03 Aligned_cols=32 Identities=34% Similarity=0.326 Sum_probs=25.6
Q ss_pred hhhhhhhhhhhhHHHHHHH-HHHHHhhhhhccc
Q 009396 94 NKALESGMKRAENEAESLK-KLKELESRVSNEA 125 (535)
Q Consensus 94 N~~LE~ekk~ae~E~E~wK-k~~eLEs~vl~l~ 125 (535)
+..|||..+.|..|+..|| .++.|....-.+.
T Consensus 354 ~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~ 386 (717)
T PF09730_consen 354 LEILECKYKVAVSEVIQLKAELKALKSKYNELE 386 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5569999999999999999 9998855444443
No 142
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=28.65 E-value=1.8e+02 Score=30.37 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=25.4
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 32 EKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 32 ~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
.+||...+++|...++|++|-.-|..|-.-|+++++.+
T Consensus 86 DrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L 123 (292)
T KOG4005|consen 86 DRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESL 123 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777666666666666666654
No 143
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=28.59 E-value=1.4e+02 Score=22.83 Aligned_cols=45 Identities=27% Similarity=0.372 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
|..+-.+|..+|.........=...+..|-.+|+.|.+|+-.+.+
T Consensus 4 L~~~h~~Ld~~I~~~e~~~~~~d~~l~~LKk~kL~LKDei~~ll~ 48 (49)
T PF04325_consen 4 LFEEHHELDKEIHRLEKRPEPDDEELERLKKEKLRLKDEIYRLLR 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHTT--S-HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455566666555544333344556666777777777766654
No 144
>PRK09343 prefoldin subunit beta; Provisional
Probab=28.50 E-value=1e+02 Score=27.62 Aligned_cols=33 Identities=33% Similarity=0.355 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDE 51 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~E 51 (535)
+|++|+.-++.+|......-+.|+.++++++..
T Consensus 75 ~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~ 107 (121)
T PRK09343 75 ELKERKELLELRSRTLEKQEKKLREKLKELQAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777766666666666666665543
No 145
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=27.99 E-value=1.8e+02 Score=28.21 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=8.6
Q ss_pred hhhhhhhHHHHHHH-HHHHHhh
Q 009396 99 SGMKRAENEAESLK-KLKELES 119 (535)
Q Consensus 99 ~ekk~ae~E~E~wK-k~~eLEs 119 (535)
.|..+..++++.-+ .....|+
T Consensus 159 ~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444 3333333
No 146
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.79 E-value=80 Score=34.82 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 39 EKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 39 E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
+.++.++.++..++..++++++.++.
T Consensus 431 ~~l~~~l~~~~~~~~~~~~~~~~~~~ 456 (650)
T TIGR03185 431 GEAQNELFRSEAEIEELLRQLETLKE 456 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444433
No 147
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=27.78 E-value=1.8e+02 Score=34.52 Aligned_cols=37 Identities=32% Similarity=0.483 Sum_probs=21.7
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHH-HHHHHhhhhhccc
Q 009396 89 QLVVENKALESGMKRAENEAESLK-KLKELESRVSNEA 125 (535)
Q Consensus 89 Ql~~eN~~LE~ekk~ae~E~E~wK-k~~eLEs~vl~l~ 125 (535)
+|.=+-..|+.+...++.+++-+. ++..|+.+...++
T Consensus 888 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 925 (1163)
T COG1196 888 ELEEELRELESELAELKEEIEKLRERLEELEAKLERLE 925 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666666666666666 6666555554444
No 148
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=27.70 E-value=62 Score=39.03 Aligned_cols=69 Identities=25% Similarity=0.369 Sum_probs=46.3
Q ss_pred hhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcc-------ccccccccccc--CCCcchhhhhhhhhhhhhhh
Q 009396 34 KKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEI-------SLGVVDLTREG--EGDGVAQLVVENKALESGMK 102 (535)
Q Consensus 34 k~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~-------~~~vvdlt~~~--eee~~~Ql~~eN~~LE~ekk 102 (535)
-+...|.|+.--+.|-+||.-|+++|..++.+.|+..- +.-+-|+.-+. .--+++||+.||-.|+..+.
T Consensus 262 ykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~e 339 (1195)
T KOG4643|consen 262 YKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKE 339 (1195)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777888888999999999999888876421 12222332222 34567888888888876553
No 149
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.70 E-value=1e+02 Score=27.18 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=18.8
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 31 IEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 31 I~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
+.+.+.+.+.++++.+++..+-..|+.|++.|+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4444555555555555555555555566665554
No 150
>PRK04325 hypothetical protein; Provisional
Probab=27.46 E-value=2.2e+02 Score=23.81 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
.|++||..||.-+-=-.--.+.|-.-..+...+...|+..|+.|..
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777655444444444444444444444455555555533
No 151
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.43 E-value=1.2e+02 Score=33.45 Aligned_cols=52 Identities=25% Similarity=0.334 Sum_probs=36.0
Q ss_pred hhhhhhhhHHHHHHH-HHHHHhhhhhccc--cCCCCcc-eeechhhcccCCCcCCc
Q 009396 98 ESGMKRAENEAESLK-KLKELESRVSNEA--LEGTPSK-HIISMEREKEGASSESK 149 (535)
Q Consensus 98 E~ekk~ae~E~E~wK-k~~eLEs~vl~l~--~~gTp~~-y~~~~~~~k~~~~~~~~ 149 (535)
+.-.+|+++|++.+- +-..|++||.++. +|+||.- -.++-++.+.+..++|-
T Consensus 56 ~a~irrieaendsl~frndql~rrvenfqfe~pt~~aa~k~~~~k~~~~~tqsdsa 111 (637)
T KOG4421|consen 56 AASIRRIEAENDSLGFRNDQLERRVENFQFEIPTHEAAKKKDKDKGGRRGTQSDSA 111 (637)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHhccCCCCCccccccccccCCCCCCCCCcc
Confidence 444689999999999 9999999998765 8888865 22222333444444443
No 152
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.37 E-value=1.1e+02 Score=37.63 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=36.3
Q ss_pred CCCcchhhhhhhhhhhhhhhhhhHHHHHHH-HHHHHhhhhhccc
Q 009396 83 EGDGVAQLVVENKALESGMKRAENEAESLK-KLKELESRVSNEA 125 (535)
Q Consensus 83 eee~~~Ql~~eN~~LE~ekk~ae~E~E~wK-k~~eLEs~vl~l~ 125 (535)
++--++++--.+..||.+.+..+.|++.+. .++-|+.++..++
T Consensus 933 s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~ 976 (1293)
T KOG0996|consen 933 SDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELE 976 (1293)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 566677788888899999999999999999 8888888877655
No 153
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=27.35 E-value=64 Score=36.85 Aligned_cols=96 Identities=24% Similarity=0.372 Sum_probs=48.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhh-------hchHHHHHHHHHhhccCcccccccccccccCC--------------
Q 009396 26 ELESEIEKKKTQFEKLEQKFKELEDEK-------NGIEEELKALKREKKGSEISLGVVDLTREGEG-------------- 84 (535)
Q Consensus 26 ~Le~EI~Kk~~e~E~LE~K~kel~~EK-------~~le~El~~lKr~~E~~E~~~~vvdlt~~~ee-------------- 84 (535)
.|-.||+.++-++|.||.|+..|+..| ..||.-|++.+|..--+|.|.-=-=..+..+|
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r 536 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATR 536 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhcc
Confidence 344567777777778887777776543 33444444443322222221000000000122
Q ss_pred -CcchhhhhhhhhhhhhhhhhhHHHHHHH-HHHHHhhhh
Q 009396 85 -DGVAQLVVENKALESGMKRAENEAESLK-KLKELESRV 121 (535)
Q Consensus 85 -e~~~Ql~~eN~~LE~ekk~ae~E~E~wK-k~~eLEs~v 121 (535)
||-.++--+=+.||.|.++...|.-.=. ..-.||+-+
T Consensus 537 ~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 537 QECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444567777777777766555 666666644
No 154
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=27.04 E-value=35 Score=35.56 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHH-------HHHHhhhhchHHHHHHHHHhhccC-ccccccccc
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKF-------KELEDEKNGIEEELKALKREKKGS-EISLGVVDL 78 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~-------kel~~EK~~le~El~~lKr~~E~~-E~~~~vvdl 78 (535)
=+|..++|+.+++..+-+-.|-+|| .++..-++.+..||++|....... |-|-+|++.
T Consensus 216 ldRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa~~l~~ 281 (311)
T PF04642_consen 216 LDRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQAEMLRA 281 (311)
T ss_pred HHHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4677889999999999999999998 567777888999999998766666 445555543
No 155
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=26.88 E-value=72 Score=32.25 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=17.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 27 LESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 27 Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
|+.++++.+.+...++..+..+..|...++++|+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444444444444444444444444444444444433
No 156
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=26.86 E-value=1.7e+02 Score=28.06 Aligned_cols=67 Identities=27% Similarity=0.448 Sum_probs=43.6
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhhhhhhHHHHH
Q 009396 31 IEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAES 110 (535)
Q Consensus 31 I~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ae~E~E~ 110 (535)
..+++...+.|+.++..+..+...++.+|..++...+..+ .-..++-+-..|+-+.++..+|++.
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~---------------eR~~~l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESE---------------EREELLEELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777777777777777777755333331 1344666777777777777777775
Q ss_pred HH
Q 009396 111 LK 112 (535)
Q Consensus 111 wK 112 (535)
+.
T Consensus 129 ~~ 130 (188)
T PF03962_consen 129 YS 130 (188)
T ss_pred HH
Confidence 54
No 157
>PF08243 SPT2: SPT2 chromatin protein; InterPro: IPR013256 This entry includes the Saccharomyces cerevisiae (Baker's yeast) protein SPT2 which is a chromatin protein involved in transcriptional regulation []. These proteins shows conservation of several domains across numerous species, including having a cluster of positively charged amino acids. This cluster probably functions in the binding properties of the proteins []. Sin1p/Spt2p probably modulates the local chromatin structure by binding two strands of double-stranded DNA at their crossover point. Sin1p/Spt2p has sequence similarity to HMG1 and serves as a negative transcriptional regulator of a small family of genes that are activated by the SWI/SNF chromatin-remodelling complex. It is also involved in maintaining the integrity of chromatin during transcription elongation. Sin1p/Spt2 is required for, and is directly involved in, the efficient recruitment of the mRNA cleavage/polyadenylation complex []. Spt2 is also involved in regulating levels of histone H3 over transcribed regions [].
Probab=26.80 E-value=35 Score=30.89 Aligned_cols=12 Identities=50% Similarity=0.841 Sum_probs=9.6
Q ss_pred ccCccCCccccC
Q 009396 373 ESENLNGFIVDD 384 (535)
Q Consensus 373 E~esl~~FIvdD 384 (535)
++.+|++||.+|
T Consensus 24 ~D~~~ddFi~dd 35 (116)
T PF08243_consen 24 EDSDLDDFIDDD 35 (116)
T ss_pred cccchhcccccc
Confidence 566899999766
No 158
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=26.56 E-value=1.1e+02 Score=35.27 Aligned_cols=40 Identities=30% Similarity=0.353 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 25 LELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 25 ~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
.+||..-|+..+|.+.+-+|..||..+....+-||-+||-
T Consensus 96 ~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~ 135 (907)
T KOG2264|consen 96 TELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKG 135 (907)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 4455555555555555555555555555555555555544
No 159
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.50 E-value=1.6e+02 Score=34.03 Aligned_cols=100 Identities=27% Similarity=0.344 Sum_probs=58.2
Q ss_pred hcccchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHh-------hhhchHHHHHHHHHhhccCcccccccccccccCCC
Q 009396 13 ESRKCSELESKCLELESEIEKKKTQFEKLEQKFKELED-------EKNGIEEELKALKREKKGSEISLGVVDLTREGEGD 85 (535)
Q Consensus 13 ~~~rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~-------EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee 85 (535)
.+.+-.+||.-+..|..|+..++.|+|.|++++.++.. ++..|..|||.+|-+. .+-+.|-+.=.||-
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE-----~RllseYSELEEEN 179 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFRE-----ARLLSEYSELEEEN 179 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhc
Confidence 34455666767777777778888999999999987654 5555555666655432 23333333333333
Q ss_pred cchhhh--------hhhhhhhhhhhhhhHHHHHHH-HHHHH
Q 009396 86 GVAQLV--------VENKALESGMKRAENEAESLK-KLKEL 117 (535)
Q Consensus 86 ~~~Ql~--------~eN~~LE~ekk~ae~E~E~wK-k~~eL 117 (535)
-..|-- ||=--|--|.+|.|.|+|..+ ...++
T Consensus 180 IsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~ 220 (772)
T KOG0999|consen 180 ISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEA 220 (772)
T ss_pred chHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333311 222234445677777887776 44443
No 160
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=26.47 E-value=1e+02 Score=32.65 Aligned_cols=38 Identities=34% Similarity=0.581 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHh-------hhhchHHHHHHH
Q 009396 25 LELESEIEKKKTQFEKLEQKFKELED-------EKNGIEEELKAL 62 (535)
Q Consensus 25 ~~Le~EI~Kk~~e~E~LE~K~kel~~-------EK~~le~El~~l 62 (535)
.+|++-|+++|-|||.+..+|..|.+ |-.--|+||++|
T Consensus 136 a~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkl 180 (338)
T KOG3647|consen 136 AALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKL 180 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999975 445556666665
No 161
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=26.42 E-value=1e+02 Score=31.19 Aligned_cols=39 Identities=33% Similarity=0.440 Sum_probs=33.0
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 31 IEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 31 I~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
|.+.+.+++.|+.+++++..|...++.|++.++.+.+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (364)
T TIGR01242 1 ISELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERL 39 (364)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677999999999999999999999999998766544
No 162
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=26.38 E-value=54 Score=37.64 Aligned_cols=92 Identities=29% Similarity=0.366 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcc--hhhhhhhhhhhh
Q 009396 22 SKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGV--AQLVVENKALES 99 (535)
Q Consensus 22 ~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~--~Ql~~eN~~LE~ 99 (535)
.++++|-.|-.-.+-|++...+---.|+.....+|+|||.+|.+.+..-+ . ..+.+++.| || +-+---.
T Consensus 329 akVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~-~-----~~~~e~ddiPmAq---RkRFTRv 399 (832)
T KOG2077|consen 329 AKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQ-K-----AKDDEDDDIPMAQ---RKRFTRV 399 (832)
T ss_pred HHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-----hcccccccccHHH---HhhhHHH
Confidence 34455555555555555544433333444455566667766665444311 0 112233333 33 3344456
Q ss_pred hhhhhhHHHHHHH-HHHHHhhhhh
Q 009396 100 GMKRAENEAESLK-KLKELESRVS 122 (535)
Q Consensus 100 ekk~ae~E~E~wK-k~~eLEs~vl 122 (535)
||.|-=-|--.+| |+-||+--|-
T Consensus 400 EMaRVLMeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 400 EMARVLMERNQYKERLMELQEAVR 423 (832)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHh
Confidence 7777777778888 8888886554
No 163
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=26.30 E-value=1.6e+02 Score=22.96 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKEL 48 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel 48 (535)
...+..|+.+|.+.+.+++.|++..+.|
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555444
No 164
>smart00784 SPT2 SPT2 chromatin protein. This entry includes the Saccharomyces cerevisiae protein SPT2 which is a chromatin protein involved in transcriptional regulation PUBMED:15563464.
Probab=25.96 E-value=39 Score=30.88 Aligned_cols=12 Identities=50% Similarity=0.930 Sum_probs=9.7
Q ss_pred ccCccCCccccC
Q 009396 373 ESENLNGFIVDD 384 (535)
Q Consensus 373 E~esl~~FIvdD 384 (535)
+++.|++||.+|
T Consensus 24 ~d~d~ddFi~dd 35 (111)
T smart00784 24 EDEDMDDFIEDD 35 (111)
T ss_pred hhhhhhccccCc
Confidence 577899999655
No 165
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.86 E-value=1.2e+02 Score=32.66 Aligned_cols=50 Identities=24% Similarity=0.234 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
+|+++..|.+|+.-.+.--|.|--=+++|++++..||.++-.|+.+++++
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL 272 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDIL 272 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 37788888888888888788888888999999999999999999888877
No 166
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=25.78 E-value=1.4e+02 Score=33.07 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
.|++.-.+.++.-+.+++++.+-+|+.+.|.|.+-|++|+..|..++
T Consensus 25 ~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 25 CEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666777777788888899999999999999998888888885443
No 167
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=25.72 E-value=2.6e+02 Score=26.80 Aligned_cols=31 Identities=35% Similarity=0.591 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHhhccCc
Q 009396 40 KLEQKFKELEDEKNGIEEELKALKREKKGSE 70 (535)
Q Consensus 40 ~LE~K~kel~~EK~~le~El~~lKr~~E~~E 70 (535)
.|+.+.++|+.++..|+.++..++..++..+
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e 154 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLE 154 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777666654
No 168
>PRK00736 hypothetical protein; Provisional
Probab=25.37 E-value=2.6e+02 Score=23.12 Aligned_cols=45 Identities=22% Similarity=0.345 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
++.||..||.-|-=-.--.+.|-.-..+-..+...|+..|+.|..
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666555444444444444444444444455555555543
No 169
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=25.34 E-value=1.5e+02 Score=30.79 Aligned_cols=51 Identities=25% Similarity=0.384 Sum_probs=43.3
Q ss_pred cccchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 14 SRKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 14 ~~rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
.-++-+||+-+..|--|+.+|..++|.+-..|..|..|...|.++|+....
T Consensus 118 kd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rde 168 (302)
T PF09738_consen 118 KDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDE 168 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888899999999999999999999999999999976644
No 170
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.31 E-value=2.2e+02 Score=24.71 Aligned_cols=45 Identities=24% Similarity=0.391 Sum_probs=34.7
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHH
Q 009396 18 SELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKAL 62 (535)
Q Consensus 18 ~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~l 62 (535)
++||.||.+||--+---..-.+.|-.-++|..-....++.-|+.|
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L 48 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLL 48 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999998887777777777777777776666677777776
No 171
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=25.18 E-value=2.4e+02 Score=30.04 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=46.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhhhhhhHHH
Q 009396 29 SEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEA 108 (535)
Q Consensus 29 ~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ae~E~ 108 (535)
.+|-..-.+.-.|..++..|.+|+|.+..+++.++...+. ....|.-+-+.|--+.+..|.+.
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~-----------------~~~~l~~~~~~l~~~~~~~~~~~ 92 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKD-----------------KIEEIKKELKELKEELTELSAAL 92 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-----------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666777777777777665433221 01223444455555555555555
Q ss_pred HHHH-HHHHHhhhhhccccCCCCc
Q 009396 109 ESLK-KLKELESRVSNEALEGTPS 131 (535)
Q Consensus 109 E~wK-k~~eLEs~vl~l~~~gTp~ 131 (535)
.... ++.++=+++-++-.|.+|+
T Consensus 93 ~~~~~~~~~~~~~lPN~~~~~vP~ 116 (418)
T TIGR00414 93 KALEAELQDKLLSIPNIPHESVPV 116 (418)
T ss_pred HHHHHHHHHHHHhCCCCCCccCCC
Confidence 4444 5555555555555666654
No 172
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=24.99 E-value=99 Score=26.03 Aligned_cols=33 Identities=27% Similarity=0.568 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 34 KKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 34 k~~e~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
...+...|+++++.|+.++..++.+++.++.+.
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777777777777666544
No 173
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=24.95 E-value=1e+02 Score=25.28 Aligned_cols=41 Identities=34% Similarity=0.464 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHH
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKA 61 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~ 61 (535)
++=+.+|+..+.+.+.+.+.|+.+.+.++.+...++..|++
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777777777777777777776666666666665554
No 174
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=24.83 E-value=1e+02 Score=34.77 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=20.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHH
Q 009396 18 SELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEE 57 (535)
Q Consensus 18 ~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~ 57 (535)
-+.|+|+.+||..++....+-+....-+..+.++|..+..
T Consensus 118 ~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SR 157 (617)
T PF15070_consen 118 QEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASR 157 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Confidence 3445555555555555554444444445555555555443
No 175
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=24.69 E-value=1.4e+02 Score=31.64 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHH
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELK 60 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~ 60 (535)
..++..|..+-++.+.+...|.+.+.+++.+|..+|.+|-
T Consensus 143 ~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~ 182 (342)
T PF06632_consen 143 QAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLY 182 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666777777777777776663
No 176
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.57 E-value=1.6e+02 Score=30.51 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=31.2
Q ss_pred hhhhhhhhhhhhhhHHHHHHH-H----HHHHhhhhhccccCCCCcceeec
Q 009396 92 VENKALESGMKRAENEAESLK-K----LKELESRVSNEALEGTPSKHIIS 136 (535)
Q Consensus 92 ~eN~~LE~ekk~ae~E~E~wK-k----~~eLEs~vl~l~~~gTp~~y~~~ 136 (535)
=+|..+..|+++.+.||+..+ + =.-|..|+.++-..||-..||+.
T Consensus 73 ~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidv 122 (265)
T COG3883 73 KEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDV 122 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 345556666666666666666 3 34477888888888887778875
No 177
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=24.51 E-value=1.6e+02 Score=34.13 Aligned_cols=99 Identities=34% Similarity=0.384 Sum_probs=60.0
Q ss_pred hhhhHHHHHHHHHHhhh-------hhHHHHHHHHHHHHhhhhchHHHHHHHHHh-hccC--cccccccccccccCCCcch
Q 009396 19 ELESKCLELESEIEKKK-------TQFEKLEQKFKELEDEKNGIEEELKALKRE-KKGS--EISLGVVDLTREGEGDGVA 88 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~-------~e~E~LE~K~kel~~EK~~le~El~~lKr~-~E~~--E~~~~vvdlt~~~eee~~~ 88 (535)
.|-.||.+|+.||-..+ .|++-|...+.++..+...++-+.+.||.+ .|-+ | ++-+.|-+.=.||-+..
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE-~rll~dyselEeENisl 109 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFRE-ARLLQDYSELEEENISL 109 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHH
Confidence 35677888888776655 456667777666666666666555555442 1111 3 45555655555555555
Q ss_pred h---hh-----hhhhhhhhhhhhhhHHHHHHH-HHHHHh
Q 009396 89 Q---LV-----VENKALESGMKRAENEAESLK-KLKELE 118 (535)
Q Consensus 89 Q---l~-----~eN~~LE~ekk~ae~E~E~wK-k~~eLE 118 (535)
| .+ ||=-.|--|.+|-+-|++.|+ ...|+.
T Consensus 110 QKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 110 QKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 11 222245567889999999999 666543
No 178
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=24.43 E-value=1.4e+02 Score=34.78 Aligned_cols=50 Identities=24% Similarity=0.467 Sum_probs=36.4
Q ss_pred chhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 17 CSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 17 C~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
+.-|+.+|+.+..||++|+.|+..|.+++..+..+-.-...-+..||-..
T Consensus 282 ~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl 331 (775)
T PF10174_consen 282 SLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESL 331 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34467889999999999999999999988877665554444444444433
No 179
>COG5570 Uncharacterized small protein [Function unknown]
Probab=23.95 E-value=92 Score=25.90 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=14.3
Q ss_pred HHHHHhhhhchHHHHHHHHHh
Q 009396 45 FKELEDEKNGIEEELKALKRE 65 (535)
Q Consensus 45 ~kel~~EK~~le~El~~lKr~ 65 (535)
+.+|.--|+.|.+|+..||.+
T Consensus 35 i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 35 IRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 456666677777777777754
No 180
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.93 E-value=2.9e+02 Score=28.12 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchH
Q 009396 24 CLELESEIEKKKTQFEKLEQKFKELEDEKNGIE 56 (535)
Q Consensus 24 ~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le 56 (535)
+..++.++.+.+.++-.++..+.++.+.+..++
T Consensus 47 ~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 47 LEALEIELEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333333
No 181
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=23.93 E-value=2.1e+02 Score=33.76 Aligned_cols=75 Identities=25% Similarity=0.341 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHH--hhhhc-----hHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhh-hhhhhhhhhhhHH
Q 009396 36 TQFEKLEQKFKELE--DEKNG-----IEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVEN-KALESGMKRAENE 107 (535)
Q Consensus 36 ~e~E~LE~K~kel~--~EK~~-----le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN-~~LE~ekk~ae~E 107 (535)
....+|-+|.|+-+ .+|++ |+.|++.||+..-++|- +--+.+|| .-+-.|++|-+-+
T Consensus 474 ~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee---------------~Ek~~~E~I~k~~ae~~rq~~~ 538 (961)
T KOG4673|consen 474 AIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEE---------------TEKLLQETIEKHQAELTRQKDY 538 (961)
T ss_pred HHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHH---------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777777766 56665 89999999998888853 11122232 1233455555555
Q ss_pred HHHHH-HHHHHhhhhhccc
Q 009396 108 AESLK-KLKELESRVSNEA 125 (535)
Q Consensus 108 ~E~wK-k~~eLEs~vl~l~ 125 (535)
.--.. ...+||++++++.
T Consensus 539 ~~~sr~~~~~le~~~~a~q 557 (961)
T KOG4673|consen 539 YSNSRALAAALEAQALAEQ 557 (961)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 44444 5566777776665
No 182
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=23.91 E-value=1.9e+02 Score=28.78 Aligned_cols=85 Identities=29% Similarity=0.354 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhh
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESG 100 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~e 100 (535)
+.++..|+.+.+.-..+-+.|+.+-.+++.++..|+.+-.....+.+.++.. ...-...|++|..+...-+-|
T Consensus 32 e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e-------~~e~~~~i~~l~ee~~~ke~E 104 (246)
T PF00769_consen 32 EETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQE-------LREAEAEIARLEEESERKEEE 104 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666777766666666666666555554444444320 001123356666667777777
Q ss_pred hhhhhHHHHHHH
Q 009396 101 MKRAENEAESLK 112 (535)
Q Consensus 101 kk~ae~E~E~wK 112 (535)
..+...+++.=.
T Consensus 105 a~~lq~el~~ar 116 (246)
T PF00769_consen 105 AEELQEELEEAR 116 (246)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766666555
No 183
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=23.86 E-value=1.6e+02 Score=33.31 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=14.0
Q ss_pred chhhhhhhhhhhhhhhhhhHHHH
Q 009396 87 VAQLVVENKALESGMKRAENEAE 109 (535)
Q Consensus 87 ~~Ql~~eN~~LE~ekk~ae~E~E 109 (535)
+.++.-..+.||-|+++.-.|+.
T Consensus 157 ~~~~krr~~~le~e~~~Lk~en~ 179 (546)
T KOG0977|consen 157 INTLKRRIKALEDELKRLKAENS 179 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566666666666666655553
No 184
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=23.73 E-value=97 Score=30.67 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=16.5
Q ss_pred hhhchHHHHHHHHHhhccCcc
Q 009396 51 EKNGIEEELKALKREKKGSEI 71 (535)
Q Consensus 51 EK~~le~El~~lKr~~E~~E~ 71 (535)
+.+.++-||++++++||.+|.
T Consensus 139 ~i~slk~EL~d~iKe~e~~em 159 (181)
T PF04645_consen 139 EIESLKSELNDLIKEREIREM 159 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999888763
No 185
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.63 E-value=1.4e+02 Score=27.76 Aligned_cols=35 Identities=37% Similarity=0.472 Sum_probs=26.4
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 009396 18 SELESKCLELESEIEKKKTQFEKLEQKFKELEDEK 52 (535)
Q Consensus 18 ~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK 52 (535)
-+|++|+.-||..|.-...+-+.|+.+|++|.++.
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888877777788888887776654
No 186
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=23.55 E-value=2.8e+02 Score=29.68 Aligned_cols=40 Identities=15% Similarity=0.065 Sum_probs=20.9
Q ss_pred hhhcccccccccccCCcCCCCCCCCCccCCccceeccCCC
Q 009396 155 QVRKNLAFEEDRSLGKKMAPSTPGGVRTASSGVIDICDSD 194 (535)
Q Consensus 155 ~Vrk~LsFee~~~~~kk~apstp~g~~~~~~~vidi~Dsd 194 (535)
.+-..|.||-|---=-.+.|--|.|-+|.+.--|.+...-
T Consensus 185 ~ay~~lk~E~GvHrv~rvs~~~~~~rrhts~a~V~vlP~~ 224 (364)
T TIGR00020 185 YAYGYLKSEQGVHRLVRISPFDANGRRHTSFASVFVMPEV 224 (364)
T ss_pred CHHHHHhhccceEEEEecCCCCCCCCeEeeeEEEEEecCC
Confidence 3444566666532222344555566667666656555443
No 187
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=23.41 E-value=39 Score=35.35 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=10.8
Q ss_pred ccCccCCccccCCCCCCCCCCCC
Q 009396 373 ESENLNGFIVDDGTEDSDGDDAS 395 (535)
Q Consensus 373 E~esl~~FIvdD~s~~S~~~~ss 395 (535)
+.+++.+|--+++++.++++++.
T Consensus 225 e~~D~E~~~~~~~~~~~~~s~~d 247 (303)
T KOG3064|consen 225 ETDDSEDWDGDDDSDESDDSDED 247 (303)
T ss_pred cccchhhhcccchhhhhhhcccc
Confidence 44455555543444444443333
No 188
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=23.34 E-value=1.8e+02 Score=32.25 Aligned_cols=44 Identities=30% Similarity=0.434 Sum_probs=26.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 26 ELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 26 ~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
+|-.|.++.+-|.+.|.+.+++++.+-..+.++|..+.+..+.+
T Consensus 180 ~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~ 223 (447)
T KOG2751|consen 180 DLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERL 223 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566666666666666666666666665555554
No 189
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=22.86 E-value=2.8e+02 Score=27.71 Aligned_cols=45 Identities=31% Similarity=0.403 Sum_probs=33.8
Q ss_pred chHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhhhhhhHHHHHHH
Q 009396 54 GIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAESLK 112 (535)
Q Consensus 54 ~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ae~E~E~wK 112 (535)
.+++||..||-.+.-+| +.-.+|+..++.||-|.....++|+-+.
T Consensus 64 ~l~eEledLk~~~~~lE--------------E~~~~L~aq~rqlEkE~q~L~~~i~~Lq 108 (193)
T PF14662_consen 64 ALEEELEDLKTLAKSLE--------------EENRSLLAQARQLEKEQQSLVAEIETLQ 108 (193)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777776665553 3467889999999999999888887764
No 190
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=22.85 E-value=1.7e+02 Score=31.05 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 22 SKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 22 ~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
-+...|+..+.+.+.++..|+.+.+.+..+...+..|++.+|.+.+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 15 HTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888999999999999999999999999998877665
No 191
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=22.49 E-value=1.7e+02 Score=28.52 Aligned_cols=41 Identities=29% Similarity=0.443 Sum_probs=24.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHh
Q 009396 25 LELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKRE 65 (535)
Q Consensus 25 ~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~ 65 (535)
..|..|-++.+.+++.|+.+.+.|+.|...|+.++..++..
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666655555443
No 192
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=22.28 E-value=1.4e+02 Score=29.17 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=24.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhh---chHHHHHHHHHhhccC
Q 009396 30 EIEKKKTQFEKLEQKFKELEDEKN---GIEEELKALKREKKGS 69 (535)
Q Consensus 30 EI~Kk~~e~E~LE~K~kel~~EK~---~le~El~~lKr~~E~~ 69 (535)
.+.+...||+.|+++.++|..+.. .++.|...||+...-.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 455666677777777777776666 4455666666544433
No 193
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=22.12 E-value=1.3e+02 Score=34.01 Aligned_cols=39 Identities=36% Similarity=0.412 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHH
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEE 58 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~E 58 (535)
||.-|..+=-+|++.|.+++.|+.|+++++.|...++.+
T Consensus 368 Le~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 368 LEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999987765555444
No 194
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=22.06 E-value=4.3e+02 Score=25.75 Aligned_cols=39 Identities=33% Similarity=0.483 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHH
Q 009396 25 LELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALK 63 (535)
Q Consensus 25 ~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lK 63 (535)
..|+.+|..+.++...||.+.++|+.....++.+...++
T Consensus 113 k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 113 KKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLK 151 (190)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555554444444444444443
No 195
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=21.39 E-value=2.1e+02 Score=28.07 Aligned_cols=6 Identities=50% Similarity=1.143 Sum_probs=4.3
Q ss_pred ccchhh
Q 009396 15 RKCSEL 20 (535)
Q Consensus 15 ~rC~E~ 20 (535)
-+|.||
T Consensus 117 N~C~e~ 122 (176)
T PF12999_consen 117 NTCAEL 122 (176)
T ss_pred cHHHHH
Confidence 467787
No 196
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.36 E-value=3.8e+02 Score=27.89 Aligned_cols=31 Identities=35% Similarity=0.473 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDE 51 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~E 51 (535)
.+++.++..+|..++.+.+.++..+.++.+.
T Consensus 210 k~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~ 240 (312)
T smart00787 210 KEKLKKLLQEIMIKVKKLEELEEELQELESK 240 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666665555544433
No 197
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.29 E-value=2.5e+02 Score=24.71 Aligned_cols=36 Identities=19% Similarity=0.471 Sum_probs=17.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHH
Q 009396 26 ELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKA 61 (535)
Q Consensus 26 ~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~ 61 (535)
.||+-||..=-...+|+-...||..+...+..|...
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555554444
No 198
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=20.91 E-value=4.7e+02 Score=24.72 Aligned_cols=28 Identities=32% Similarity=0.313 Sum_probs=18.4
Q ss_pred hhhhhhhhhHHHHHHH-HHHHHhhhhhcc
Q 009396 97 LESGMKRAENEAESLK-KLKELESRVSNE 124 (535)
Q Consensus 97 LE~ekk~ae~E~E~wK-k~~eLEs~vl~l 124 (535)
|=.||.....+.+-|+ |..+||+..+.+
T Consensus 78 l~sEk~~L~k~lq~~q~kv~eLE~~~~~~ 106 (140)
T PF10473_consen 78 LRSEKENLDKELQKKQEKVSELESLNSSL 106 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3345555666666777 888888876543
No 199
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=20.66 E-value=1.8e+02 Score=26.83 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=27.2
Q ss_pred cccchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchH
Q 009396 14 SRKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIE 56 (535)
Q Consensus 14 ~~rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le 56 (535)
+-||-+|+.+|.++...+..+|.-+-.|+..+...+--|+.+|
T Consensus 57 ~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~le 99 (107)
T PF09304_consen 57 NQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAILE 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3467777777777777777777666666666655554444443
No 200
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.43 E-value=2.6e+02 Score=27.21 Aligned_cols=8 Identities=25% Similarity=0.492 Sum_probs=3.7
Q ss_pred CCccceec
Q 009396 183 ASSGVIDI 190 (535)
Q Consensus 183 ~~~~vidi 190 (535)
...+.|++
T Consensus 170 ~~~~~i~~ 177 (251)
T PF11932_consen 170 VYQGTITL 177 (251)
T ss_pred EEEEEEeE
Confidence 34444544
No 201
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.24 E-value=1.4e+02 Score=28.97 Aligned_cols=27 Identities=37% Similarity=0.593 Sum_probs=23.8
Q ss_pred hhhhhhhhhhHHHHHHH-HHHHHhhhhh
Q 009396 96 ALESGMKRAENEAESLK-KLKELESRVS 122 (535)
Q Consensus 96 ~LE~ekk~ae~E~E~wK-k~~eLEs~vl 122 (535)
.+|.+..+.+.|||.++ +.+.|+.+|.
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 47788899999999999 9999998875
No 202
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=20.22 E-value=1.9e+02 Score=29.19 Aligned_cols=44 Identities=30% Similarity=0.538 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
......|+.|++++.++++.++.+-.+|..+-.++..|-..|..
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLle 200 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLE 200 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 34445566666666666666666666655555555555555543
No 203
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=20.06 E-value=2.3e+02 Score=31.02 Aligned_cols=105 Identities=25% Similarity=0.367 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcc-----cccccccccccC--CCcchhhhh
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEI-----SLGVVDLTREGE--GDGVAQLVV 92 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~-----~~~vvdlt~~~e--ee~~~Ql~~ 92 (535)
|..-+..|..||++-+.+...|..+.......-..|+.||+.++.+.+.... ...|.+++..-. -.-.-+..-
T Consensus 307 L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ 386 (522)
T PF05701_consen 307 LRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKK 386 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhhhHHHHHHH-HHHHHhhhhhcc
Q 009396 93 ENKALESGMKRAENEAESLK-KLKELESRVSNE 124 (535)
Q Consensus 93 eN~~LE~ekk~ae~E~E~wK-k~~eLEs~vl~l 124 (535)
+-...-.|...+-.|+|--| .+...|.++.+.
T Consensus 387 ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa 419 (522)
T PF05701_consen 387 EAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAA 419 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 204
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=20.05 E-value=92 Score=35.33 Aligned_cols=12 Identities=8% Similarity=0.551 Sum_probs=9.3
Q ss_pred HHHHHHHhhhhh
Q 009396 442 KAVCALYRQQTS 453 (535)
Q Consensus 442 kAVCALYRQqk~ 453 (535)
.++-++||+|+.
T Consensus 739 ~~La~~Fk~r~~ 750 (784)
T PF04931_consen 739 EQLAAIFKERKE 750 (784)
T ss_pred HHHHHHHHHHHh
Confidence 456799999974
No 205
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=20.01 E-value=2e+02 Score=31.09 Aligned_cols=50 Identities=26% Similarity=0.425 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHhhhhhHHH----------------HHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 20 LESKCLELESEIEKKKTQFEK----------------LEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~----------------LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
+++|+.+|+.+|.+-+...+. |+...+.|..-...|+..|+.|+......
T Consensus 168 ~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~ 233 (475)
T PF10359_consen 168 IQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSESSS 233 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 478888888877766555444 44555555555566666666665544433
Done!