Query 009396
Match_columns 535
No_of_seqs 26 out of 28
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 04:15:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jee_A YIIU; FTSZ, septum, coi 88.0 0.74 2.5E-05 38.6 5.2 32 38-69 8-39 (81)
2 3u59_A Tropomyosin beta chain; 86.4 1.1 3.9E-05 37.3 5.6 52 20-71 7-58 (101)
3 3q8t_A Beclin-1; autophagy, AT 84.5 2.7 9.3E-05 35.3 7.0 46 25-70 7-52 (96)
4 3u1c_A Tropomyosin alpha-1 cha 84.2 1.7 5.9E-05 36.5 5.7 88 21-118 8-99 (101)
5 2fxo_A Myosin heavy chain, car 81.8 2.9 0.0001 36.1 6.4 95 21-120 19-126 (129)
6 1ic2_A Tropomyosin alpha chain 80.0 2.7 9.3E-05 33.8 5.2 51 20-70 4-54 (81)
7 3na7_A HP0958; flagellar bioge 77.1 6.5 0.00022 36.8 7.6 101 20-121 30-134 (256)
8 1i84_S Smooth muscle myosin he 75.1 1.2 4E-05 50.1 2.3 16 97-112 981-996 (1184)
9 3a7p_A Autophagy protein 16; c 72.6 6.7 0.00023 36.2 6.2 54 16-69 76-129 (152)
10 1ci6_A Transcription factor AT 70.3 5.3 0.00018 31.1 4.4 34 32-65 19-52 (63)
11 3nmd_A CGMP dependent protein 70.2 8.5 0.00029 31.7 5.7 43 24-66 21-63 (72)
12 3o0z_A RHO-associated protein 69.0 6 0.00021 36.8 5.2 55 18-72 93-160 (168)
13 3m9b_A Proteasome-associated A 68.7 5.9 0.0002 38.8 5.3 127 21-217 53-179 (251)
14 3hnw_A Uncharacterized protein 68.5 6.4 0.00022 34.9 5.0 67 29-109 68-134 (138)
15 3hnw_A Uncharacterized protein 68.5 7.2 0.00024 34.6 5.4 50 17-66 77-126 (138)
16 3ol1_A Vimentin; structural ge 67.7 24 0.00082 30.2 8.3 78 25-123 37-114 (119)
17 2fxo_A Myosin heavy chain, car 66.3 7.7 0.00026 33.5 5.0 49 22-70 76-124 (129)
18 3htk_A Structural maintenance 65.6 17 0.00058 27.1 6.2 49 19-67 9-57 (60)
19 2dfs_A Myosin-5A; myosin-V, in 63.1 14 0.00047 41.9 7.5 66 37-105 978-1043(1080)
20 2v71_A Nuclear distribution pr 62.9 18 0.0006 34.1 7.1 30 91-120 55-85 (189)
21 2i1j_A Moesin; FERM, coiled-co 62.3 3.8 0.00013 43.1 2.8 97 16-112 336-439 (575)
22 3tnu_A Keratin, type I cytoske 62.0 38 0.0013 29.1 8.5 33 18-50 41-73 (131)
23 3bas_A Myosin heavy chain, str 61.7 14 0.00049 30.2 5.6 48 18-65 10-57 (89)
24 3oja_B Anopheles plasmodium-re 61.6 15 0.00052 36.7 6.8 15 105-119 564-579 (597)
25 2v71_A Nuclear distribution pr 61.6 25 0.00084 33.1 7.8 78 21-112 55-136 (189)
26 1t2k_D Cyclic-AMP-dependent tr 61.3 10 0.00036 28.9 4.4 36 32-67 18-53 (61)
27 3na7_A HP0958; flagellar bioge 60.4 26 0.00089 32.8 7.8 43 20-62 37-79 (256)
28 2wt7_A Proto-oncogene protein 60.4 16 0.00054 28.2 5.3 34 23-56 24-57 (63)
29 4etp_A Kinesin-like protein KA 60.2 13 0.00043 37.6 6.0 48 18-65 13-60 (403)
30 1jnm_A Proto-oncogene C-JUN; B 59.9 12 0.0004 28.8 4.4 38 32-69 18-55 (62)
31 3qne_A Seryl-tRNA synthetase, 59.4 29 0.00099 36.4 8.7 85 29-131 33-118 (485)
32 2dq0_A Seryl-tRNA synthetase; 59.0 26 0.00088 36.0 8.1 86 29-132 31-117 (455)
33 3a7p_A Autophagy protein 16; c 58.8 49 0.0017 30.5 9.0 104 19-129 39-151 (152)
34 1gd2_E Transcription factor PA 56.5 14 0.00046 29.9 4.5 32 17-48 31-62 (70)
35 3s4r_A Vimentin; alpha-helix, 55.5 41 0.0014 27.9 7.4 70 21-113 22-92 (93)
36 3tnu_B Keratin, type II cytosk 55.3 53 0.0018 28.1 8.3 32 19-50 40-71 (129)
37 2jee_A YIIU; FTSZ, septum, coi 54.3 28 0.00094 29.2 6.1 38 20-57 11-48 (81)
38 1ci6_A Transcription factor AT 54.2 24 0.00083 27.4 5.4 36 21-56 22-57 (63)
39 3m9b_A Proteasome-associated A 53.4 26 0.00088 34.4 6.7 31 87-117 63-94 (251)
40 3nmd_A CGMP dependent protein 51.9 21 0.00073 29.4 5.0 45 19-63 23-67 (72)
41 2v66_B Nuclear distribution pr 51.7 44 0.0015 29.2 7.2 49 21-69 2-54 (111)
42 2dgc_A Protein (GCN4); basic d 51.4 16 0.00056 28.5 4.1 34 32-65 26-59 (63)
43 3s9g_A Protein hexim1; cyclin 51.1 31 0.0011 30.2 6.1 46 17-69 39-84 (104)
44 2wt7_A Proto-oncogene protein 50.9 19 0.00066 27.8 4.4 37 32-68 19-55 (63)
45 1t2k_D Cyclic-AMP-dependent tr 50.8 27 0.00091 26.6 5.1 35 22-56 22-56 (61)
46 1jnm_A Proto-oncogene C-JUN; B 50.6 16 0.00056 27.9 3.9 39 21-59 21-59 (62)
47 3mq7_A Bone marrow stromal ant 48.5 23 0.00077 31.8 5.0 45 25-69 56-104 (121)
48 3u06_A Protein claret segregat 48.4 17 0.00058 37.0 4.8 44 20-63 15-58 (412)
49 1gd2_E Transcription factor PA 47.1 13 0.00046 30.0 3.0 42 21-62 28-69 (70)
50 3c3g_A Alpha/beta peptide with 46.6 17 0.00059 26.3 3.2 26 39-64 3-28 (33)
51 1dh3_A Transcription factor CR 46.3 23 0.00079 27.0 4.1 36 32-67 18-53 (55)
52 1wle_A Seryl-tRNA synthetase; 46.2 56 0.0019 34.2 8.3 92 30-131 71-163 (501)
53 1kd8_A GABH AIV, GCN4 acid bas 46.0 17 0.00059 26.7 3.2 27 39-65 4-30 (36)
54 1l8d_A DNA double-strand break 45.8 28 0.00095 28.4 4.9 43 21-63 63-105 (112)
55 1lwu_C Fibrinogen gamma chain; 45.8 31 0.0011 34.5 6.1 53 16-68 6-58 (323)
56 2dq3_A Seryl-tRNA synthetase; 45.7 31 0.0011 34.9 6.1 84 30-131 31-115 (425)
57 3oja_B Anopheles plasmodium-re 45.7 26 0.00088 35.1 5.5 43 25-67 452-494 (597)
58 1l8d_A DNA double-strand break 45.3 35 0.0012 27.8 5.4 39 24-62 5-43 (112)
59 2dfs_A Myosin-5A; myosin-V, in 44.5 19 0.00066 40.7 4.9 49 19-70 988-1036(1080)
60 2oto_A M protein; helical coil 43.7 47 0.0016 29.1 6.3 47 20-66 34-80 (155)
61 2yy0_A C-MYC-binding protein; 43.6 29 0.00098 26.6 4.2 23 26-48 23-45 (53)
62 2l5g_B Putative uncharacterize 43.3 35 0.0012 25.8 4.5 33 19-51 6-38 (42)
63 2nr5_A Hypothetical protein SO 42.5 13 0.00043 29.9 2.2 18 105-122 43-61 (67)
64 1gk6_A Vimentin; intermediate 42.4 75 0.0026 24.4 6.5 51 20-70 5-55 (59)
65 3bas_A Myosin heavy chain, str 42.4 60 0.0021 26.5 6.3 43 20-62 19-61 (89)
66 3efg_A Protein SLYX homolog; x 42.1 58 0.002 26.5 6.1 50 18-67 10-59 (78)
67 3m91_A Proteasome-associated A 41.2 58 0.002 25.0 5.6 42 21-62 8-49 (51)
68 3c3f_A Alpha/beta peptide with 40.2 25 0.00084 25.7 3.2 26 39-64 4-29 (34)
69 2bni_A General control protein 39.2 26 0.00089 25.5 3.2 26 39-64 4-29 (34)
70 3m48_A General control protein 39.2 26 0.0009 25.4 3.2 25 40-64 4-28 (33)
71 2efr_A General control protein 38.6 99 0.0034 28.2 7.7 91 27-119 26-126 (155)
72 2zqm_A Prefoldin beta subunit 37.8 40 0.0014 27.3 4.6 29 21-49 76-104 (117)
73 4b4t_K 26S protease regulatory 37.8 33 0.0011 34.9 4.9 47 18-64 45-91 (428)
74 2eqb_B RAB guanine nucleotide 37.6 61 0.0021 27.9 5.8 49 20-68 10-58 (97)
75 2b9c_A Striated-muscle alpha t 37.6 54 0.0018 29.4 5.7 48 17-64 75-122 (147)
76 3ljm_A Coil Ser L9C; de novo d 37.5 31 0.0011 24.4 3.2 25 38-62 3-27 (31)
77 2xv5_A Lamin-A/C; structural p 37.0 90 0.0031 25.3 6.4 50 21-70 11-60 (74)
78 2r2v_A GCN4 leucine zipper; co 36.9 32 0.0011 25.1 3.3 26 39-64 4-29 (34)
79 2oxj_A Hybrid alpha/beta pepti 36.8 32 0.0011 25.1 3.3 26 39-64 4-29 (34)
80 2zqm_A Prefoldin beta subunit 36.6 43 0.0015 27.1 4.6 37 28-64 5-41 (117)
81 3mq9_A Bone marrow stromal ant 36.2 32 0.0011 33.7 4.4 41 24-67 427-467 (471)
82 2yy0_A C-MYC-binding protein; 35.5 43 0.0015 25.6 4.1 32 36-67 19-50 (53)
83 3swk_A Vimentin; cytoskeleton, 35.0 51 0.0017 27.0 4.8 41 25-65 17-57 (86)
84 1kd8_B GABH BLL, GCN4 acid bas 34.9 33 0.0011 25.3 3.2 26 39-64 4-29 (36)
85 1a93_B MAX protein, coiled coi 34.5 41 0.0014 24.4 3.6 33 17-49 2-34 (34)
86 3u59_A Tropomyosin beta chain; 34.1 72 0.0025 26.4 5.6 47 21-67 29-75 (101)
87 1gk4_A Vimentin; intermediate 33.9 1.1E+02 0.0036 24.8 6.4 50 21-70 32-81 (84)
88 4etp_A Kinesin-like protein KA 33.8 53 0.0018 33.1 5.7 38 24-61 5-42 (403)
89 1uo4_A General control protein 33.8 36 0.0012 24.8 3.2 26 39-64 4-29 (34)
90 1nkp_B MAX protein, MYC proto- 33.6 37 0.0013 26.9 3.6 21 42-62 53-73 (83)
91 3ljm_A Coil Ser L9C; de novo d 33.4 38 0.0013 23.9 3.2 23 20-42 6-28 (31)
92 1go4_E MAD1 (mitotic arrest de 32.6 71 0.0024 27.5 5.4 27 19-45 16-42 (100)
93 1fxk_A Prefoldin; archaeal pro 32.5 59 0.002 26.0 4.7 29 21-49 71-99 (107)
94 2efr_A General control protein 32.2 1.2E+02 0.0042 27.6 7.2 30 94-123 121-151 (155)
95 2wq1_A General control protein 31.1 42 0.0015 24.3 3.2 26 39-64 3-28 (33)
96 3u1c_A Tropomyosin alpha-1 cha 31.1 76 0.0026 26.5 5.3 50 20-69 28-77 (101)
97 3vkg_A Dynein heavy chain, cyt 30.9 1.2E+02 0.0041 38.6 9.0 44 22-65 2014-2057(3245)
98 2eqb_B RAB guanine nucleotide 30.5 83 0.0028 27.1 5.5 46 19-64 16-61 (97)
99 3lss_A Seryl-tRNA synthetase; 30.3 1.5E+02 0.0052 31.0 8.5 38 29-66 37-74 (484)
100 4ghu_A TNF receptor-associated 30.0 51 0.0018 29.8 4.4 32 19-50 4-35 (198)
101 2lw1_A ABC transporter ATP-bin 29.7 55 0.0019 26.5 4.1 22 24-45 24-45 (89)
102 3q8t_A Beclin-1; autophagy, AT 29.6 1.2E+02 0.004 25.4 6.2 46 20-65 9-54 (96)
103 2rpq_B Activating transcriptio 29.5 20 0.00067 27.9 1.3 32 165-196 9-43 (49)
104 2hy6_A General control protein 29.3 47 0.0016 24.2 3.2 26 39-64 4-29 (34)
105 2w83_C C-JUN-amino-terminal ki 28.9 60 0.002 27.2 4.2 25 40-64 34-58 (77)
106 3u06_A Protein claret segregat 27.6 78 0.0027 32.2 5.7 37 25-61 6-42 (412)
107 1fxk_A Prefoldin; archaeal pro 27.6 81 0.0028 25.2 4.7 34 31-64 3-36 (107)
108 3ghg_A Fibrinogen alpha chain; 26.5 1.1E+02 0.0037 33.3 6.6 53 17-69 112-164 (562)
109 1t3j_A Mitofusin 1; coiled coi 26.3 1.3E+02 0.0044 25.9 5.9 41 19-63 51-91 (96)
110 2gkw_A TNF receptor-associated 25.8 67 0.0023 28.5 4.3 32 19-50 4-35 (192)
111 3s9g_A Protein hexim1; cyclin 25.8 1.5E+02 0.0052 26.0 6.3 57 36-113 37-93 (104)
112 3vkg_A Dynein heavy chain, cyt 25.4 1.1E+02 0.0039 38.9 7.5 49 22-70 2028-2076(3245)
113 1hjb_A Ccaat/enhancer binding 25.3 85 0.0029 26.2 4.6 27 25-51 39-65 (87)
114 3oa7_A Head morphogenesis prot 25.3 1E+02 0.0035 29.7 5.7 61 22-82 30-94 (206)
115 2e7s_A RAB guanine nucleotide 25.2 1.5E+02 0.0051 26.8 6.4 47 18-64 4-53 (135)
116 4b4t_J 26S protease regulatory 25.2 52 0.0018 33.6 3.9 44 20-63 23-66 (405)
117 3o0z_A RHO-associated protein 25.0 3.9E+02 0.013 24.8 9.3 23 98-120 129-151 (168)
118 2dgc_A Protein (GCN4); basic d 24.9 81 0.0028 24.6 4.1 31 21-51 29-59 (63)
119 1ic2_A Tropomyosin alpha chain 24.9 1.4E+02 0.0049 23.7 5.7 49 20-68 25-73 (81)
120 3brv_B NF-kappa-B essential mo 24.2 81 0.0028 26.0 4.1 32 19-50 30-61 (70)
121 3vp9_A General transcriptional 23.6 1.6E+02 0.0055 25.1 6.0 48 19-69 40-87 (92)
122 1ik9_A DNA repair protein XRCC 22.9 1.1E+02 0.0037 28.8 5.3 41 20-60 137-177 (213)
123 1gu4_A CAAT/enhancer binding p 22.3 1E+02 0.0035 25.2 4.4 27 38-64 38-64 (78)
124 2lw1_A ABC transporter ATP-bin 22.1 71 0.0024 25.8 3.4 25 36-60 22-46 (89)
125 1x8y_A Lamin A/C; structural p 21.9 1.9E+02 0.0064 23.5 5.9 47 21-67 34-80 (86)
126 2xnx_M M protein, M1-BC1; cell 21.5 86 0.0029 28.8 4.2 21 21-41 32-52 (146)
127 3tnu_A Keratin, type I cytoske 21.5 2E+02 0.0069 24.6 6.3 42 23-64 85-126 (131)
128 3cvf_A Homer-3, homer protein 21.5 1.5E+02 0.0053 24.5 5.3 46 17-62 8-53 (79)
129 3swy_A Cyclic nucleotide-gated 20.9 1.5E+02 0.0052 22.4 4.8 35 18-59 1-35 (46)
130 1wt6_A Myotonin-protein kinase 20.8 1.5E+02 0.0051 25.0 5.1 39 29-67 31-69 (81)
131 2xdj_A Uncharacterized protein 20.5 93 0.0032 25.7 3.8 45 18-62 2-46 (83)
132 3rrk_A V-type ATPase 116 kDa s 20.3 1.3E+02 0.0045 28.6 5.4 18 15-32 63-80 (357)
No 1
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=87.97 E-value=0.74 Score=38.59 Aligned_cols=32 Identities=31% Similarity=0.430 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 38 FEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 38 ~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
++.||+|...++.....|+-|+.+||..+..+
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777766544
No 2
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=86.37 E-value=1.1 Score=37.29 Aligned_cols=52 Identities=29% Similarity=0.347 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcc
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEI 71 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~ 71 (535)
+.+++..|-.|...-.-.++.|+++.+.++.....+++|+..|++.+..+|.
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~ 58 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3677888999999999999999999999999999999999999988877753
No 3
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=84.50 E-value=2.7 Score=35.27 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=37.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCc
Q 009396 25 LELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSE 70 (535)
Q Consensus 25 ~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E 70 (535)
..|+.+|++.+-+=..|-+.+.+|+.|+..+..||.+++.+.+.+.
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~ 52 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 6788888888888888888888888888888888888887766654
No 4
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=84.22 E-value=1.7 Score=36.48 Aligned_cols=88 Identities=23% Similarity=0.286 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhh
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESG 100 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~e 100 (535)
.+++..|..+...-.-.++.+++++++++.+...+++|+..|.+.+..+|.. +|.+ -.+|---+..||-.
T Consensus 8 KkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~e---ld~~-------ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDS---RDQV-------LEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHH
Confidence 6788899999999999999999999999999999999999998877766530 0110 11244344444433
Q ss_pred -h--hhhhHHHHHHH-HHHHHh
Q 009396 101 -M--KRAENEAESLK-KLKELE 118 (535)
Q Consensus 101 -k--k~ae~E~E~wK-k~~eLE 118 (535)
| ..||+||.+.. |..-||
T Consensus 78 ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 78 EENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3 34566777776 555444
No 5
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=81.81 E-value=2.9 Score=36.10 Aligned_cols=95 Identities=22% Similarity=0.319 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcc------------cccccccccccCCCcch
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEI------------SLGVVDLTREGEGDGVA 88 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~------------~~~vvdlt~~~eee~~~ 88 (535)
++.+..|...+++-......|+.++..|..||+.|...|.+=+..+...|- ..-+-++ .+.+.
T Consensus 19 ~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el-----~~rle 93 (129)
T 2fxo_A 19 KEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM-----NKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 333444444444444444555666666666666655555443322222211 0112222 23344
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHH-HHHHHhhh
Q 009396 89 QLVVENKALESGMKRAENEAESLK-KLKELESR 120 (535)
Q Consensus 89 Ql~~eN~~LE~ekk~ae~E~E~wK-k~~eLEs~ 120 (535)
+.-=.|..|..+|++.+.++.-++ ...+||+-
T Consensus 94 eeee~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 94 DEEEMNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455678899999999999999999 89988864
No 6
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.05 E-value=2.7 Score=33.79 Aligned_cols=51 Identities=29% Similarity=0.395 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCc
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSE 70 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E 70 (535)
+.+++..|..+...-...++.+++++++.+.....+++|+..|++....+|
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE 54 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTE 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999988766664
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=77.09 E-value=6.5 Score=36.81 Aligned_cols=101 Identities=11% Similarity=0.074 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCccccccccccccc---CCCcchhhhhhhhh
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREG---EGDGVAQLVVENKA 96 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~---eee~~~Ql~~eN~~ 96 (535)
|-..+..|+.++...+..+..++..++++..+...++.++..++...+..+.+..-+- +.+. =..-|..+--+...
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~ 108 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQ 108 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777777777777777777777654444432211110 1111 01113333444455
Q ss_pred hhhhhhhhhHHHHHHH-HHHHHhhhh
Q 009396 97 LESGMKRAENEAESLK-KLKELESRV 121 (535)
Q Consensus 97 LE~ekk~ae~E~E~wK-k~~eLEs~v 121 (535)
||-+...+...+|..+ .+.+++..+
T Consensus 109 lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 109 ANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444 444444333
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=75.11 E-value=1.2 Score=50.06 Aligned_cols=16 Identities=13% Similarity=0.327 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHHHH
Q 009396 97 LESGMKRAENEAESLK 112 (535)
Q Consensus 97 LE~ekk~ae~E~E~wK 112 (535)
++.+.+..+.++..++
T Consensus 981 le~~l~~l~~el~~le 996 (1184)
T 1i84_S 981 ADGKIKKMEDDILIME 996 (1184)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444444444
No 9
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=72.63 E-value=6.7 Score=36.15 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=43.8
Q ss_pred cchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 16 KCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 16 rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
.|..++.||..|+.||.-|..-++.|...+-.|..+-+.+|+.++.|+.++..+
T Consensus 76 El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 76 ELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355668888888888888888888888888888888888888888888766543
No 10
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=70.34 E-value=5.3 Score=31.14 Aligned_cols=34 Identities=32% Similarity=0.526 Sum_probs=16.8
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHh
Q 009396 32 EKKKTQFEKLEQKFKELEDEKNGIEEELKALKRE 65 (535)
Q Consensus 32 ~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~ 65 (535)
+||+.+.+.|+.++++|+.+-..|+.++..|+++
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555444443
No 11
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=70.24 E-value=8.5 Score=31.72 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 24 CLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 24 ~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
+.+|+..|++|..|.-..+...++|+.+....+.+++.|+.++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888877778888888888888888888877765
No 12
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=69.02 E-value=6 Score=36.82 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=42.5
Q ss_pred hhhhhHHHHHHHHHHhh-------hhhHHHHHHHHHHHHhhhhchH----HHHHHHHH--hhccCccc
Q 009396 18 SELESKCLELESEIEKK-------KTQFEKLEQKFKELEDEKNGIE----EELKALKR--EKKGSEIS 72 (535)
Q Consensus 18 ~E~e~r~~~Le~EI~Kk-------~~e~E~LE~K~kel~~EK~~le----~El~~lKr--~~E~~E~~ 72 (535)
.+|+.|+..|..|+... ..++..|.-|+-.|+.||+.++ =+||++.. +-|+.+|+
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~~~H~ 160 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHK 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888887654 4577788889999999999999 77999954 66666664
No 13
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=68.69 E-value=5.9 Score=38.84 Aligned_cols=127 Identities=16% Similarity=0.206 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhh
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESG 100 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~e 100 (535)
|+|+.+|+.++......|+.|...++++..|...|.+||+.|+.=--. ...|++..
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~---iGtvlev~--------------------- 108 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSG---YGVLLATH--------------------- 108 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEE---EEEEEEEC---------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce---EEEEEEEc---------------------
Confidence 667888888888888888888888888877777777777776641100 12222211
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhccccCCCCcceeechhhcccCCCcCCccchhhhhhcccccccccccCCcCCCCCCCCC
Q 009396 101 MKRAENEAESLKKLKELESRVSNEALEGTPSKHIISMEREKEGASSESKPERGRQVRKNLAFEEDRSLGKKMAPSTPGGV 180 (535)
Q Consensus 101 kk~ae~E~E~wKk~~eLEs~vl~l~~~gTp~~y~~~~~~~k~~~~~~~~~~~~~~Vrk~LsFee~~~~~kk~apstp~g~ 180 (535)
.. ..+..- .+|++++=.+|=.=+ -.++.|.+-+..
T Consensus 109 -------------------------------------dd--~~aiV~---s~Gr~~~V~Vsp~Vd---~e~LkPG~rVaL 143 (251)
T 3m9b_A 109 -------------------------------------DD--DTVDVF---TSGRKMRLTCSPNID---AASLKKGQTVRL 143 (251)
T ss_dssp -------------------------------------SS--SCEEEE---CSSSCCEECBCTTSC---TTTSCSSCEEEE
T ss_pred -------------------------------------CC--CEEEEE---eCCceEEEEeCCCCC---HHHCCCCCEEEe
Confidence 00 000000 123333333221100 257788888888
Q ss_pred ccCCccceeccCCCCCCCccccccccCCcceEEeccC
Q 009396 181 RTASSGVIDICDSDDEPDVPHLLSIFGDKNIYISTDH 217 (535)
Q Consensus 181 ~~~~~~vidi~DsddE~d~~~i~~~~g~~~v~is~Dh 217 (535)
+ .+..||++++.+.--.+-++-+...++.-.++++|
T Consensus 144 N-eSlaVVevLp~E~~Gev~tv~E~l~d~~R~lV~~~ 179 (251)
T 3m9b_A 144 N-EALTVVEAGTFEAVGEISTLREILADGHRALVVGH 179 (251)
T ss_dssp C-TTCCBCCCCCCCCCSEEEEEEEECTTSSEEEEECS
T ss_pred C-CccEEEEecCCCCcccEEEEEEEecCCCEEEEecC
Confidence 6 58899999999999888888766644323344666
No 14
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=68.47 E-value=6.4 Score=34.95 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=31.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhhhhhhHHH
Q 009396 29 SEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEA 108 (535)
Q Consensus 29 ~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ae~E~ 108 (535)
-|+-+.+.+++.|++.++++..|-..|-.||..++...+...+ .+..|-=+|..|+-+..+.|+|.
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~--------------e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAK--------------EIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555554444443333321 13334445555555555555554
Q ss_pred H
Q 009396 109 E 109 (535)
Q Consensus 109 E 109 (535)
+
T Consensus 134 ~ 134 (138)
T 3hnw_A 134 N 134 (138)
T ss_dssp H
T ss_pred H
Confidence 4
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=68.45 E-value=7.2 Score=34.62 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=27.3
Q ss_pred chhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 17 CSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 17 C~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
+.+|+..+.+++.||...+-+...++-|..++..|...+..+++.|.++.
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555554443
No 16
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=67.71 E-value=24 Score=30.25 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhhhhh
Q 009396 25 LELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRA 104 (535)
Q Consensus 25 ~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~a 104 (535)
..|+.||...+-..+.+..|+.++..-+..+|+++..||+.. ....+-.-.||....+.
T Consensus 37 a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~l---------------------D~~~l~r~dLE~~iesL 95 (119)
T 3ol1_A 37 ARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV---------------------DNASLARLDLERKVESL 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc---------------------cHHHHHHHHHHHHHHHH
Confidence 356777788888888888888888888888888888887642 22345555678888888
Q ss_pred hHHHHHHHHHHHHhhhhhc
Q 009396 105 ENEAESLKKLKELESRVSN 123 (535)
Q Consensus 105 e~E~E~wKk~~eLEs~vl~ 123 (535)
..|+...|+.-+=|.+.++
T Consensus 96 ~eEl~FLKk~heeEl~eLq 114 (119)
T 3ol1_A 96 QEEIAFLKKLHEEEIQELQ 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8899999855454555543
No 17
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=66.33 E-value=7.7 Score=33.46 Aligned_cols=49 Identities=27% Similarity=0.405 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCc
Q 009396 22 SKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSE 70 (535)
Q Consensus 22 ~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E 70 (535)
.+-..|+..|.-....++..|....+|.++|--+++++..|+...+..|
T Consensus 76 ~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 76 KNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3336677777778888888888888888888889999999888766554
No 18
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=65.56 E-value=17 Score=27.12 Aligned_cols=49 Identities=27% Similarity=0.370 Sum_probs=41.7
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhc
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKK 67 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E 67 (535)
.|+.++.+++..+..++.+++.+.+++..+....+.+-+++..|+.+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888889999999999999999999999999999877543
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=63.06 E-value=14 Score=41.86 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhhhhhh
Q 009396 37 QFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAE 105 (535)
Q Consensus 37 e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ae 105 (535)
|++.++.+.+.|+.|...+++++..+..+.+.+|.. .+-+++.-++++..|.=+|..|+..+...+
T Consensus 978 e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~---~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 978 EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEW---ADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555554444444220 001111112555555555555555444444
No 20
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=62.90 E-value=18 Score=34.13 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=18.1
Q ss_pred hhhhhhhhhhhhhhhHHHHHHH-HHHHHhhh
Q 009396 91 VVENKALESGMKRAENEAESLK-KLKELESR 120 (535)
Q Consensus 91 ~~eN~~LE~ekk~ae~E~E~wK-k~~eLEs~ 120 (535)
-=.|+.|...-.+...|++.|| ||..+-+-
T Consensus 55 Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 55 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566667777777 77666433
No 21
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=62.25 E-value=3.8 Score=43.10 Aligned_cols=97 Identities=13% Similarity=0.207 Sum_probs=21.3
Q ss_pred cchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHH-------HHhhccCcccccccccccccCCCcch
Q 009396 16 KCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKAL-------KREKKGSEISLGVVDLTREGEGDGVA 88 (535)
Q Consensus 16 rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~l-------Kr~~E~~E~~~~vvdlt~~~eee~~~ 88 (535)
...||+.|+..++.|..+...+.+.-+.+-..|+.+...+++|-..| ...+..++.+..+---+++.=+..+.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~ 415 (575)
T 2i1j_A 336 KQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIR 415 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45778888888888888777776655555555555544444444444 22333332211111111111122333
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHH
Q 009396 89 QLVVENKALESGMKRAENEAESLK 112 (535)
Q Consensus 89 Ql~~eN~~LE~ekk~ae~E~E~wK 112 (535)
..-.+=..|+-+..+.++|.+.|+
T Consensus 416 ~~~~~~~~~~~~~~~~~~e~~~~~ 439 (575)
T 2i1j_A 416 AKQEEVSRIQQEVELKDSETRRLQ 439 (575)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334456777888888888887
No 22
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=61.95 E-value=38 Score=29.14 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=26.7
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 009396 18 SELESKCLELESEIEKKKTQFEKLEQKFKELED 50 (535)
Q Consensus 18 ~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~ 50 (535)
.+|-..|..|+.||+..+.....||..+++.+.
T Consensus 41 ~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 41 SELRRTMQNLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456677888999999888888888888877765
No 23
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=61.68 E-value=14 Score=30.23 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=36.8
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHh
Q 009396 18 SELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKRE 65 (535)
Q Consensus 18 ~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~ 65 (535)
...++.+..++.+|.+.+..++..+...++|+.....+..|-+.|-.+
T Consensus 10 ~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 10 ARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777888888888888887788888877777777777777665
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.61 E-value=15 Score=36.74 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=8.8
Q ss_pred hHHHHHHH-HHHHHhh
Q 009396 105 ENEAESLK-KLKELES 119 (535)
Q Consensus 105 e~E~E~wK-k~~eLEs 119 (535)
..|+.-|+ ++++|+.
T Consensus 564 ~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 564 RQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 34555666 6666654
No 25
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=61.59 E-value=25 Score=33.14 Aligned_cols=78 Identities=19% Similarity=0.242 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhh----hhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhh
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDE----KNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKA 96 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~E----K~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~ 96 (535)
|+|+-.|...+...+.|++.+..|+.....| -+.|+.|+..|+..++.+- .- |..|-+.|-.
T Consensus 55 Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~--~~------------ireLEq~NDd 120 (189)
T 2v71_A 55 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH--KY------------VRELEQANDD 120 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH------------HHHHHHHhhH
Confidence 5666666666667777777777777776666 7777777777776555442 11 3334455555
Q ss_pred hhhhhhhhhHHHHHHH
Q 009396 97 LESGMKRAENEAESLK 112 (535)
Q Consensus 97 LE~ekk~ae~E~E~wK 112 (535)
||--.|-+.+=++-..
T Consensus 121 lEr~~R~~~~SleD~e 136 (189)
T 2v71_A 121 LERAKRATIMSLEDFE 136 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHH
Confidence 5555554444444443
No 26
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=61.26 E-value=10 Score=28.90 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=21.8
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhc
Q 009396 32 EKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKK 67 (535)
Q Consensus 32 ~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E 67 (535)
++|+...+.||.+...|+.+...|..++..|+.+..
T Consensus 18 ~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666666666655443
No 27
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=60.43 E-value=26 Score=32.75 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHH
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKAL 62 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~l 62 (535)
|+..+..|...|.+.+.+++.++...+.++.+...+..-++..
T Consensus 37 le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~ 79 (256)
T 3na7_A 37 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI 79 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443333333
No 28
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=60.38 E-value=16 Score=28.23 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchH
Q 009396 23 KCLELESEIEKKKTQFEKLEQKFKELEDEKNGIE 56 (535)
Q Consensus 23 r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le 56 (535)
++..|+.+....+.+|..|...+..|..|+..|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444455555544444444444333
No 29
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=60.20 E-value=13 Score=37.61 Aligned_cols=48 Identities=19% Similarity=0.341 Sum_probs=37.1
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHh
Q 009396 18 SELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKRE 65 (535)
Q Consensus 18 ~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~ 65 (535)
-+|++++.+|+.+|++.+.+++.|++++.+++.++..|-+++.+||-+
T Consensus 13 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 13 AALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 456777777888888888888888888888888888888888877644
No 30
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=59.94 E-value=12 Score=28.79 Aligned_cols=38 Identities=18% Similarity=0.341 Sum_probs=25.3
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 32 EKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 32 ~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
++|+.....||.+...|+.+...|..++..|+.++..+
T Consensus 18 ~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 18 KRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777777777777776665544
No 31
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=59.42 E-value=29 Score=36.42 Aligned_cols=85 Identities=19% Similarity=0.250 Sum_probs=52.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhhhhhhHHH
Q 009396 29 SEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEA 108 (535)
Q Consensus 29 ~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ae~E~ 108 (535)
.+|-..-.++-.|+.+..+|.+++|.+..++..+|+.++. ..+|+-+=+.|--+.+..|.++
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~------------------~~~l~~~~~~l~~~i~~le~~~ 94 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKED------------------AKDLIAEKEKLSNEKKEIIEKE 94 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556677777888888888888888888876542 2345555556655555555555
Q ss_pred HHHH-HHHHHhhhhhccccCCCCc
Q 009396 109 ESLK-KLKELESRVSNEALEGTPS 131 (535)
Q Consensus 109 E~wK-k~~eLEs~vl~l~~~gTp~ 131 (535)
.... ++.++=+.+=++-.|.+|+
T Consensus 95 ~~~~~~~~~~l~~iPN~~~~~vP~ 118 (485)
T 3qne_A 95 AEADKNLRSKINQVGNIVHESVVD 118 (485)
T ss_dssp HHHHHHHHHHHTTSCCCCCTTSCC
T ss_pred HHHHHHHHHHHHhCCCCCCccCCC
Confidence 4433 5555555555555666664
No 32
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=59.04 E-value=26 Score=35.97 Aligned_cols=86 Identities=24% Similarity=0.338 Sum_probs=53.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhhhhhhHHH
Q 009396 29 SEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEA 108 (535)
Q Consensus 29 ~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ae~E~ 108 (535)
.+|-..-.++-.|+.+..+|.+++|.+..++..+|+..+. ..+|+-+=+.|--+.+..|.+.
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~------------------~~~l~~~~~~~~~~~~~~~~~~ 92 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEP------------------VDELLAKSREIVKRIGELENEV 92 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC------------------THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666677777788888888888888887765432 3345555555655555555554
Q ss_pred HHHH-HHHHHhhhhhccccCCCCcc
Q 009396 109 ESLK-KLKELESRVSNEALEGTPSK 132 (535)
Q Consensus 109 E~wK-k~~eLEs~vl~l~~~gTp~~ 132 (535)
.... ++.++=+.+=++-.|.+|+-
T Consensus 93 ~~~~~~~~~~~~~ipN~~~~~vP~g 117 (455)
T 2dq0_A 93 EELKKKIDYYLWRLPNITHPSVPVG 117 (455)
T ss_dssp HHHHHHHHHHHTTSCCCCCTTSCCC
T ss_pred HHHHHHHHHHHHhCCCCCCccCCCC
Confidence 4444 55555555555556777753
No 33
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=58.76 E-value=49 Score=30.51 Aligned_cols=104 Identities=20% Similarity=0.198 Sum_probs=47.5
Q ss_pred hhhhHHHHHHHHHHhhhhh-----HHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhh
Q 009396 19 ELESKCLELESEIEKKKTQ-----FEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVE 93 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e-----~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~e 93 (535)
.+|.|.-+|..+..+-... ...+-..++.|..|.+.++.+++.|+.+.+.+.+ .+-++ -|-+.-|.++
T Consensus 39 ~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K--~~e~l-----~DEl~aLqlq 111 (152)
T 3a7p_A 39 DKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNK--NTERL-----NAALISGTIE 111 (152)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----HHHHHHHHHH
Confidence 3455555666655543332 2233345555555555555555555544333321 00000 0125668999
Q ss_pred hhhhhhhhhhhhHHH----HHHHHHHHHhhhhhccccCCC
Q 009396 94 NKALESGMKRAENEA----ESLKKLKELESRVSNEALEGT 129 (535)
Q Consensus 94 N~~LE~ekk~ae~E~----E~wKk~~eLEs~vl~l~~~gT 129 (535)
++.+|-..++.+.|+ +-|=+++.=|--.++.+..||
T Consensus 112 ~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN~an~~~ 151 (152)
T 3a7p_A 112 NNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMNSEIDGT 151 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999997 567777777777777777776
No 34
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=56.52 E-value=14 Score=29.93 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=16.0
Q ss_pred chhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 009396 17 CSELESKCLELESEIEKKKTQFEKLEQKFKEL 48 (535)
Q Consensus 17 C~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel 48 (535)
+.+||.++..|+.+.+....|++.|-.....|
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555445555444444333
No 35
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=55.46 E-value=41 Score=27.95 Aligned_cols=70 Identities=24% Similarity=0.260 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhh
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESG 100 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~e 100 (535)
=+|+-.||.+=.....+.+.|.++-.. .=...-+.++..|+++ |.++..+|..|+.|
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~~~~~~--~~~~~ye~~i~~Lr~~---------------------i~~~~~ek~~l~~e 78 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLKGQGKS--RLGDLYEEEMRELRRQ---------------------VDQLTNDKARVEVE 78 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC--CcHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Confidence 345555555444443334444332111 1112246677777664 45567888999999
Q ss_pred hhhhhHHHHHHH-H
Q 009396 101 MKRAENEAESLK-K 113 (535)
Q Consensus 101 kk~ae~E~E~wK-k 113 (535)
......+++-+| |
T Consensus 79 ~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 79 RDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 999999999888 5
No 36
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.34 E-value=53 Score=28.11 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=23.2
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELED 50 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~ 50 (535)
+|-..|..|+.||+-.+.....||..+++.+.
T Consensus 40 elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44556777888888888878888777776654
No 37
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=54.29 E-value=28 Score=29.20 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHH
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEE 57 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~ 57 (535)
||.||..+--.|+-.+-|++.|..|-..|..|...+.+
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666555555555555555555554444444444333
No 38
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=54.23 E-value=24 Score=27.39 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchH
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIE 56 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le 56 (535)
..++.+|+.+.+..+.+|..|+.+...|..|...|.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888877888888777777766655443
No 39
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=53.39 E-value=26 Score=34.44 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=23.6
Q ss_pred chhhhhhhhhhhhhhhhhhHHHHHHH-HHHHH
Q 009396 87 VAQLVVENKALESGMKRAENEAESLK-KLKEL 117 (535)
Q Consensus 87 ~~Ql~~eN~~LE~ekk~ae~E~E~wK-k~~eL 117 (535)
+.+|..+|.-|.-+.+.+..|++.+| ..+.|
T Consensus 63 l~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 63 IDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788888888888888888887 55444
No 40
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=51.91 E-value=21 Score=29.37 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=38.7
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHH
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALK 63 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lK 63 (535)
+|+.-+.....||..|....+.||..+.+.+++..-|..+|.+++
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566666777788999999999999999999999999999998875
No 41
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=51.69 E-value=44 Score=29.20 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhh----hhchHHHHHHHHHhhccC
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDE----KNGIEEELKALKREKKGS 69 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~E----K~~le~El~~lKr~~E~~ 69 (535)
|+|+-.|-........|++.+..|++....| -+.|+.||..|+..++..
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l 54 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQL 54 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777777777777777766554 667899998887766655
No 42
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=51.38 E-value=16 Score=28.55 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=25.6
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHh
Q 009396 32 EKKKTQFEKLEQKFKELEDEKNGIEEELKALKRE 65 (535)
Q Consensus 32 ~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~ 65 (535)
++|+.....||.+...|..|...|..|+..|+.+
T Consensus 26 ~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 26 ARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777888888888877788888887764
No 43
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=51.14 E-value=31 Score=30.22 Aligned_cols=46 Identities=28% Similarity=0.311 Sum_probs=21.6
Q ss_pred chhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 17 CSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 17 C~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
|.+||.|..-|+.|- .-|...-+...+..-.|+.||..|+++|..+
T Consensus 39 Yl~LE~~~s~le~e~-------~rlr~~~~~~~~~v~eLe~everL~~ENq~L 84 (104)
T 3s9g_A 39 YLELEKSLSRMEDEN-------NRLRLESKRLDARVRELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 445555555555444 4444333333344444455555555554443
No 44
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=50.90 E-value=19 Score=27.77 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=28.9
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhcc
Q 009396 32 EKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKG 68 (535)
Q Consensus 32 ~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~ 68 (535)
++|+.....|+.+...|+.+...|..++..|+.+...
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777778888888888888888888888888776543
No 45
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=50.80 E-value=27 Score=26.62 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchH
Q 009396 22 SKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIE 56 (535)
Q Consensus 22 ~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le 56 (535)
.++..|+.+......+|..|..+...|..|...|.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666655555544443
No 46
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=50.65 E-value=16 Score=27.94 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHH
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEEL 59 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El 59 (535)
..++.+|+.++.....++..|......|..|...|..-|
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888878888888877777777766655443
No 47
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=48.54 E-value=23 Score=31.78 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhhh----HHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 25 LELESEIEKKKTQ----FEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 25 ~~Le~EI~Kk~~e----~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
+-|-.-+.|++.+ ++.|+.+++.|..+..-+..|+..|++.++++
T Consensus 56 ~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 56 MALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 5566666676666 88888888888888888888888888887754
No 48
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=48.39 E-value=17 Score=36.95 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHH
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALK 63 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lK 63 (535)
|.+++.+|+.+|+....+++.+++++.+++.++..|-++|.+||
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 15 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555555555555555555555555555555555555555554
No 49
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=47.12 E-value=13 Score=29.97 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHH
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKAL 62 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~l 62 (535)
+.+|-+||..+......++.|......|..+...|..||+.|
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455666666666666666665555555555555555555554
No 50
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=46.62 E-value=17 Score=26.32 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 39 EKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 39 E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
-.||.|..+|-.+|..||.|+..||.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35889999999999999999999886
No 51
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=46.28 E-value=23 Score=27.01 Aligned_cols=36 Identities=39% Similarity=0.458 Sum_probs=27.4
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhc
Q 009396 32 EKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKK 67 (535)
Q Consensus 32 ~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E 67 (535)
.+|+.-.+.||.+...|+.|-..|..++..|+..+.
T Consensus 18 ~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 18 RKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666778888888888888888888888876543
No 52
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=46.25 E-value=56 Score=34.22 Aligned_cols=92 Identities=16% Similarity=0.280 Sum_probs=52.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhhhhhhHHHH
Q 009396 30 EIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAE 109 (535)
Q Consensus 30 EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ae~E~E 109 (535)
+|-..-.++-.|.++..+|.+++|.+..++..+|+..+..+. .+.+...+|+-+=+.|--+.+..|.+..
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~----------~~~~~~~~l~~~~~~l~~~i~~l~~~~~ 140 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQV----------QQDPQYQSLRARGREIRKQLTLLYPKEA 140 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTG----------GGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccc----------cccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445556677777888888888888888888776532210 0001244566666666656555555444
Q ss_pred HHH-HHHHHhhhhhccccCCCCc
Q 009396 110 SLK-KLKELESRVSNEALEGTPS 131 (535)
Q Consensus 110 ~wK-k~~eLEs~vl~l~~~gTp~ 131 (535)
... ++.++=+.+=++-.|.+|+
T Consensus 141 ~~~~~l~~~l~~iPN~~~~~vP~ 163 (501)
T 1wle_A 141 QLEEQFYLRALRLPNQTHPDVPV 163 (501)
T ss_dssp HHHHHHHHHHTTSCCCCCTTCCC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCC
Confidence 443 4444444444444666665
No 53
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=46.03 E-value=17 Score=26.72 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHh
Q 009396 39 EKLEQKFKELEDEKNGIEEELKALKRE 65 (535)
Q Consensus 39 E~LE~K~kel~~EK~~le~El~~lKr~ 65 (535)
-.||.|..+|..+|..||+|+..||..
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 358888889999999999998888763
No 54
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.84 E-value=28 Score=28.41 Aligned_cols=43 Identities=28% Similarity=0.350 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHH
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALK 63 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lK 63 (535)
...+...+.+|.....++..|..+..++..+...++.+++.+.
T Consensus 63 ~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~~~ 105 (112)
T 1l8d_A 63 EELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKRLT 105 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777777777766443
No 55
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=45.83 E-value=31 Score=34.52 Aligned_cols=53 Identities=9% Similarity=0.132 Sum_probs=39.3
Q ss_pred cchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhcc
Q 009396 16 KCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKG 68 (535)
Q Consensus 16 rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~ 68 (535)
+|..|.+++..||.-|.....+...|+..++.+......|+..|..|+..|..
T Consensus 6 ~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~ 58 (323)
T 1lwu_C 6 TVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSR 58 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777777777777777777777777777777888888776653
No 56
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=45.69 E-value=31 Score=34.92 Aligned_cols=84 Identities=21% Similarity=0.337 Sum_probs=41.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhhhhhhHHHH
Q 009396 30 EIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAE 109 (535)
Q Consensus 30 EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ae~E~E 109 (535)
+|-..-.++-.|+.+..+|.+++|.+..++..+|+.++. ..+|+-+=+.|--+.+..+.+..
T Consensus 31 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~------------------~~~l~~~~~~~~~~~~~~~~~~~ 92 (425)
T 2dq3_A 31 KVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKD------------------TTEIQNRVKELKEEIDRLEEELR 92 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSC------------------TTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555556666666666555554433221 23344444455555554444444
Q ss_pred HHH-HHHHHhhhhhccccCCCCc
Q 009396 110 SLK-KLKELESRVSNEALEGTPS 131 (535)
Q Consensus 110 ~wK-k~~eLEs~vl~l~~~gTp~ 131 (535)
... ++.++=+.+=++-.|.+|.
T Consensus 93 ~~~~~~~~~~~~ipN~~~~~vp~ 115 (425)
T 2dq3_A 93 KVEEELKNTLLWIPNLPHPSVPV 115 (425)
T ss_dssp HHHHHHHHHHHTSCCCCCTTSCC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCC
Confidence 333 4444444444555666665
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.69 E-value=26 Score=35.10 Aligned_cols=43 Identities=19% Similarity=0.327 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhc
Q 009396 25 LELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKK 67 (535)
Q Consensus 25 ~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E 67 (535)
..|+.|+...+.+...|+++....+.....++.++.+.+..-+
T Consensus 452 e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 3355566667777777777777777777777777766654333
No 58
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.28 E-value=35 Score=27.80 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHH
Q 009396 24 CLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKAL 62 (535)
Q Consensus 24 ~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~l 62 (535)
+..++.+++..+.+...|.....+++.+...++..++.+
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444444444444
No 59
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=44.53 E-value=19 Score=40.68 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=27.3
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCc
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSE 70 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E 70 (535)
+|++.+..|+.++++...|++.||.++..+.. .|++.++.|+.++..++
T Consensus 988 ~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~ 1036 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLK 1036 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666655542 33455555555555553
No 60
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=43.70 E-value=47 Score=29.14 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
|..+..+|..++++...+++.|+.+.++|+.....|+..|+.++...
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777778788888888888888888887887777776544
No 61
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=43.63 E-value=29 Score=26.61 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=9.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHH
Q 009396 26 ELESEIEKKKTQFEKLEQKFKEL 48 (535)
Q Consensus 26 ~Le~EI~Kk~~e~E~LE~K~kel 48 (535)
.|-.|++..+.+++.|...+++|
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 62
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=43.33 E-value=35 Score=25.85 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDE 51 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~E 51 (535)
+|=..|+-.-.||.|-+.+...|+.|+++|++.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667788899999999999999999999864
No 63
>2nr5_A Hypothetical protein SO2669; PSI-2, MCSG, MAD, structural G protein structure initiative, midwest center for structural genomics; 1.90A {Shewanella oneidensis} SCOP: a.25.6.1
Probab=42.46 E-value=13 Score=29.94 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.8
Q ss_pred hHHHHHHH-HHHHHhhhhh
Q 009396 105 ENEAESLK-KLKELESRVS 122 (535)
Q Consensus 105 e~E~E~wK-k~~eLEs~vl 122 (535)
-.|+|.|- +.+|||-|+-
T Consensus 43 mqeveiwtnrikeledwlw 61 (67)
T 2nr5_A 43 MQEVEIWTNRIKELEDWLW 61 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 36899999 9999999975
No 64
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=42.42 E-value=75 Score=24.38 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCc
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSE 70 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E 70 (535)
+...|..||++++..+.+.+..-+.+.+|-.=|..|+-|+...++-.|+-|
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLEgEe 55 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLEGEE 55 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCc
Confidence 466788999999999999999888999999999999999998887555543
No 65
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=42.36 E-value=60 Score=26.53 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHH
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKAL 62 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~l 62 (535)
+++-+..|...++|-......|+.++..|..||+.|...|.+.
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~ea 61 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQL 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4666666777777777777777777777777777776554444
No 66
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=42.07 E-value=58 Score=26.49 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=34.0
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhc
Q 009396 18 SELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKK 67 (535)
Q Consensus 18 ~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E 67 (535)
.+||.||.+||.-|-=-.--.+.|-.-..+...+...|+..|+.|..+..
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888777666666666666666666666777777777755433
No 67
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=41.24 E-value=58 Score=25.05 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHH
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKAL 62 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~l 62 (535)
+.|.-+|..++......|+.|..-+++--.|...|.++|..|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888888888888888888888888888888888877765
No 68
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=40.17 E-value=25 Score=25.66 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 39 EKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 39 E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
-.||.|..+|-.++..|+.|+..||.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 35889999999999999999998875
No 69
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=39.24 E-value=26 Score=25.54 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 39 EKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 39 E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
-.||.|..+|-.++..|++|+..||.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 35889999999999999999998875
No 70
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=39.16 E-value=26 Score=25.37 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 40 KLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 40 ~LE~K~kel~~EK~~le~El~~lKr 64 (535)
.||.|..+|-.++..|+.|+..||.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5888899999999999999988875
No 71
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=38.59 E-value=99 Score=28.21 Aligned_cols=91 Identities=26% Similarity=0.269 Sum_probs=47.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC--------cccccccccccccCCCcchh-hhhhhhhh
Q 009396 27 LESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS--------EISLGVVDLTREGEGDGVAQ-LVVENKAL 97 (535)
Q Consensus 27 Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~--------E~~~~vvdlt~~~eee~~~Q-l~~eN~~L 97 (535)
+|.+++.-....+..+.|+++|+.+...+-+-|+.|....+.- +++...-+.-++++ .-|+ .--.=..|
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE--~RAE~AERsv~kL 103 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE--TRAEFAERSVTKL 103 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 6666666666667777777777777666666666653322111 11122222111111 0000 00011246
Q ss_pred hhhhhhhhHHHHHHH-HHHHHhh
Q 009396 98 ESGMKRAENEAESLK-KLKELES 119 (535)
Q Consensus 98 E~ekk~ae~E~E~wK-k~~eLEs 119 (535)
|-+.-+.|.++..|| +|+.+..
T Consensus 104 Ek~id~lEd~L~~~Kek~~~i~~ 126 (155)
T 2efr_A 104 EKSIDDLEDELYAQKLKYKAISE 126 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888888 8877643
No 72
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.83 E-value=40 Score=27.32 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELE 49 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~ 49 (535)
++|+..|+.+|.+...+.+.++.++.++.
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444444444444444433
No 73
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.78 E-value=33 Score=34.92 Aligned_cols=47 Identities=26% Similarity=0.290 Sum_probs=31.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 18 SELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 18 ~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
.+|..|+..|+.+++-...|.+.|+...+.+..|...+++|++.++.
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45567777777777777777777777777776666666777666643
No 74
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.63 E-value=61 Score=27.91 Aligned_cols=49 Identities=18% Similarity=0.351 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhcc
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKG 68 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~ 68 (535)
+.+++..|+.+......++..|...+.+...-+..+|.+++.+..+.|.
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEe 58 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666555555555555555444443
No 75
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=37.58 E-value=54 Score=29.38 Aligned_cols=48 Identities=31% Similarity=0.439 Sum_probs=30.7
Q ss_pred chhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 17 CSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 17 C~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
.-|...|+..++.++..-....+..+.|.++|+.+...+-+-|+.|..
T Consensus 75 yeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 75 YEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344455556666666666666666777777777776666666666644
No 76
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=37.46 E-value=31 Score=24.38 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHH
Q 009396 38 FEKLEQKFKELEDEKNGIEEELKAL 62 (535)
Q Consensus 38 ~E~LE~K~kel~~EK~~le~El~~l 62 (535)
.|.||.|-+.|++....||.-|.+|
T Consensus 3 wealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554444444444444433
No 77
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=37.00 E-value=90 Score=25.29 Aligned_cols=50 Identities=22% Similarity=0.352 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCc
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSE 70 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E 70 (535)
...|..||++++..+.+.+..-+.+.+|-.=|..|+-|+...++-.|+-|
T Consensus 11 ~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEGEe 60 (74)
T 2xv5_A 11 RRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEE 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 45678899999999999999888999999999999999999988666554
No 78
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=36.92 E-value=32 Score=25.09 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 39 EKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 39 E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
..||.|..+|-.++..+++|+..|+.
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46899999999999999999999875
No 79
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=36.76 E-value=32 Score=25.06 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 39 EKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 39 E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
-.||.|..+|-.++..|+.|+..||.
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 35888888999999999999988876
No 80
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=36.63 E-value=43 Score=27.14 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=28.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 28 ESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 28 e~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
.-++|.+-.+|..|.+++..+..++..++.+++.++.
T Consensus 5 ~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~ 41 (117)
T 2zqm_A 5 PPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKK 41 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777778888888888888888888888877755
No 81
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=36.17 E-value=32 Score=33.74 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhc
Q 009396 24 CLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKK 67 (535)
Q Consensus 24 ~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E 67 (535)
++.|-.-++||+++-+ .|.+|||.|...++.+|+.+..+.+
T Consensus 427 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 427 VMALMASLDAEKAQGQ---KKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777788888888843 5888888888888888888877554
No 82
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.49 E-value=43 Score=25.62 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHhhhhchHHHHHHHHHhhc
Q 009396 36 TQFEKLEQKFKELEDEKNGIEEELKALKREKK 67 (535)
Q Consensus 36 ~e~E~LE~K~kel~~EK~~le~El~~lKr~~E 67 (535)
+++|.|.+...+|..+-..|..++..|+++.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666777766543
No 83
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=35.01 E-value=51 Score=27.04 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHh
Q 009396 25 LELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKRE 65 (535)
Q Consensus 25 ~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~ 65 (535)
..|++||...+-..+-+..|+.++..-+..+|+++..||+.
T Consensus 17 ~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~Lrkd 57 (86)
T 3swk_A 17 ARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQD 57 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677888888888888999999999999999999999874
No 84
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=34.85 E-value=33 Score=25.26 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 39 EKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 39 E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
-.||.|..+|-.++..|++|+..||.
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35788888888888888888888875
No 85
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=34.52 E-value=41 Score=24.43 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=27.0
Q ss_pred chhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 009396 17 CSELESKCLELESEIEKKKTQFEKLEQKFKELE 49 (535)
Q Consensus 17 C~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~ 49 (535)
|+-|-.+..+...+|...|-+|-.|+...+.||
T Consensus 2 ~~~mRrKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 2 CGGMRRKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chhHhhhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 788888888888999888888888888776654
No 86
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=34.14 E-value=72 Score=26.37 Aligned_cols=47 Identities=21% Similarity=0.274 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhc
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKK 67 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E 67 (535)
+..+..++.+-.++..+...|..|+.-++.+.--+++.|....+..+
T Consensus 29 e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe 75 (101)
T 3u59_A 29 EADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLE 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555666666666666665555555555544333
No 87
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=33.91 E-value=1.1e+02 Score=24.77 Aligned_cols=50 Identities=18% Similarity=0.355 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCc
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSE 70 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E 70 (535)
...|..||.+|++.+.+.+..-+.+.+|-.=|..|+-|+...++=.|+-|
T Consensus 32 q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLEGEe 81 (84)
T 1gk4_A 32 QDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEE 81 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 55678889999999998888888888899999999999888877555433
No 88
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.80 E-value=53 Score=33.10 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHH
Q 009396 24 CLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKA 61 (535)
Q Consensus 24 ~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~ 61 (535)
+..|+.||...+.+.+.|+.+.++++.+...+.+.|..
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIK 42 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555554443
No 89
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=33.77 E-value=36 Score=24.82 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 39 EKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 39 E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
-.||.|..+|-.++..||+|+..||.
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35888888999999999999988875
No 90
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.58 E-value=37 Score=26.93 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=7.8
Q ss_pred HHHHHHHHhhhhchHHHHHHH
Q 009396 42 EQKFKELEDEKNGIEEELKAL 62 (535)
Q Consensus 42 E~K~kel~~EK~~le~El~~l 62 (535)
+....+|+.|+..|..+...|
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 91
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=33.44 E-value=38 Score=23.93 Aligned_cols=23 Identities=43% Similarity=0.722 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHH
Q 009396 20 LESKCLELESEIEKKKTQFEKLE 42 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE 42 (535)
||++|..||+.+|-.....|.||
T Consensus 6 lekkcaalesklqalekkleale 28 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777778777765444444443
No 92
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=32.61 E-value=71 Score=27.53 Aligned_cols=27 Identities=30% Similarity=0.318 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHH
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKF 45 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~ 45 (535)
.|..+|..|+.|.++.+.+.+.||.++
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666554
No 93
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=32.49 E-value=59 Score=26.00 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELE 49 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~ 49 (535)
++|+..++.+|.+...+.+.++.+++++.
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444444444444443
No 94
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=32.25 E-value=1.2e+02 Score=27.59 Aligned_cols=30 Identities=37% Similarity=0.439 Sum_probs=14.7
Q ss_pred hhhhhhhhhhhhHHHHHHH-HHHHHhhhhhc
Q 009396 94 NKALESGMKRAENEAESLK-KLKELESRVSN 123 (535)
Q Consensus 94 N~~LE~ekk~ae~E~E~wK-k~~eLEs~vl~ 123 (535)
++.+.-++..+=+|+.... +|-+|+--|-+
T Consensus 121 ~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~ 151 (155)
T 2efr_A 121 YKAISEEMKQLEDKVEELLSKNYHLENEVAR 151 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 3334444444445554445 66666655443
No 95
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=31.14 E-value=42 Score=24.31 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 39 EKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 39 E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
-.||.|..+|-.++..+++|+..||.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35888888888899999999888875
No 96
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=31.12 E-value=76 Score=26.48 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
++..+..++.+-.++..++..|..|+.-++.+.-.+++.|...+...+..
T Consensus 28 ~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 28 AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666777666666666666666665544433
No 97
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=30.87 E-value=1.2e+02 Score=38.61 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHh
Q 009396 22 SKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKRE 65 (535)
Q Consensus 22 ~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~ 65 (535)
.++.+++.++.+.+.+...++++++++++....|+.++.++.++
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~e 2057 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRE 2057 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444333
No 98
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.46 E-value=83 Score=27.10 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=32.3
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
.|+.+....+.|+.+...++..-.++-.+.+.++..|+.||-.|-.
T Consensus 16 ~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 16 TLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666677777777777777777777777777777777777644
No 99
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=30.26 E-value=1.5e+02 Score=31.03 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=28.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 29 SEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 29 ~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
.+|-..-.+.-.|..+..+|.+++|.+..++..+|+.+
T Consensus 37 d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~ 74 (484)
T 3lss_A 37 DAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAK 74 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444455566777788888888999999998888744
No 100
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=30.02 E-value=51 Score=29.76 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELED 50 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~ 50 (535)
.||.++..|+..|.-+..+...||.++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 35 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57888888888888888888888877777653
No 101
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.66 E-value=55 Score=26.46 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHH
Q 009396 24 CLELESEIEKKKTQFEKLEQKF 45 (535)
Q Consensus 24 ~~~Le~EI~Kk~~e~E~LE~K~ 45 (535)
+..|+.+|.+...+...|++++
T Consensus 24 le~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 102
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=29.60 E-value=1.2e+02 Score=25.36 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHh
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKRE 65 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~ 65 (535)
++..+..|+.|=...-.+.+.||...+.+..|...++.|+..|..+
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 4555556666666666666666666666666666666666666553
No 103
>2rpq_B Activating transcription factor 7-interacting protein 1; SUMO, SIM, nucleus, UBL conjugation, UBL conjugation pathway, activator; NMR {Homo sapiens}
Probab=29.48 E-value=20 Score=27.85 Aligned_cols=32 Identities=47% Similarity=0.509 Sum_probs=24.3
Q ss_pred ccccCCcCCCCCCCCC---ccCCccceeccCCCCC
Q 009396 165 DRSLGKKMAPSTPGGV---RTASSGVIDICDSDDE 196 (535)
Q Consensus 165 ~~~~~kk~apstp~g~---~~~~~~vidi~DsddE 196 (535)
|-|++||.|-+|+.-+ +..+.||||+.=-|.|
T Consensus 9 dssvnKraaesttqs~katg~dsgGVIDLTlDdEe 43 (49)
T 2rpq_B 9 DASVSKKAADSTSQCGKATGSDSSGVIDLTMDDEE 43 (49)
T ss_pred ccccchhhccCcchhheeecCCCCceEEeeecchh
Confidence 4689999999998654 5678899999754433
No 104
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=29.26 E-value=47 Score=24.20 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 39 EKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 39 E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
..||.|..+|-.++..|++|+..||.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35889999999999999999998875
No 105
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=28.93 E-value=60 Score=27.19 Aligned_cols=25 Identities=40% Similarity=0.492 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 40 KLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 40 ~LE~K~kel~~EK~~le~El~~lKr 64 (535)
.|=+|.-||-.|+..+.+||.+|+.
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~ 58 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQ 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445566666666667777666643
No 106
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.61 E-value=78 Score=32.18 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHH
Q 009396 25 LELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKA 61 (535)
Q Consensus 25 ~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~ 61 (535)
+.|+.|+...+.+.+.|+++.+++.+|...+++.|..
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777666666666544
No 107
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=27.60 E-value=81 Score=25.18 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=25.0
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 31 IEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 31 I~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
+|.+-.+|..|.+++..+..++..++.+++.++-
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~ 36 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQK 36 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777777777777777777754
No 108
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.48 E-value=1.1e+02 Score=33.26 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=46.0
Q ss_pred chhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 17 CSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 17 C~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
=.||+.||..|..+|+-.......|+.-++++..+...||-.+-.-.|.|...
T Consensus 112 S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgs 164 (562)
T 3ghg_A 112 SEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS 164 (562)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34899999999999998889999999999999999999998877666666655
No 109
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=26.31 E-value=1.3e+02 Score=25.86 Aligned_cols=41 Identities=29% Similarity=0.468 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHH
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALK 63 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lK 63 (535)
+|+..|..|+.||++ +|.++.+.|-|...-+-|+.||....
T Consensus 51 eL~~EI~~L~~eI~~----LE~iqs~aK~LRnKA~~L~~eLe~F~ 91 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQ----LEKMQNNSKLLRNKAVQLESELENFS 91 (96)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456666666666664 45666777777777777888887653
No 110
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=25.81 E-value=67 Score=28.52 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=22.2
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELED 50 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~ 50 (535)
.||.|+..|+..|..++.+...|+.++.+++.
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36777777777777777777777776666653
No 111
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=25.78 E-value=1.5e+02 Score=25.96 Aligned_cols=57 Identities=26% Similarity=0.327 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhhhhhhHHHHHHHH
Q 009396 36 TQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAESLKK 113 (535)
Q Consensus 36 ~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ae~E~E~wKk 113 (535)
.||=.||.++.-++.|-+-+...-+..-++..-+ +..|-+|-.||..| -.|.+||.+
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eL--------------e~everL~~ENq~L-------~~e~~~~~~ 93 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRLDARVREL--------------ELELDRLRAENLQL-------LTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHH--------------HHHHHHHHHHHHHH-------HHHHHhhcc
Confidence 3566677777666666655555443332221111 22356667777655 457889973
No 112
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=25.44 E-value=1.1e+02 Score=38.85 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCc
Q 009396 22 SKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSE 70 (535)
Q Consensus 22 ~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E 70 (535)
.+..+++.+|.......+.|+++|.+...||..|+.|+..|++..+..+
T Consensus 2028 ~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~ 2076 (3245)
T 3vkg_A 2028 LKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSI 2076 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555666666666677777777777766555443
No 113
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=25.32 E-value=85 Score=26.22 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=12.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 009396 25 LELESEIEKKKTQFEKLEQKFKELEDE 51 (535)
Q Consensus 25 ~~Le~EI~Kk~~e~E~LE~K~kel~~E 51 (535)
++++.+......||..|.++...|..|
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E 65 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRE 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333
No 114
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=25.27 E-value=1e+02 Score=29.67 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHh-hccC--cc-ccccccccccc
Q 009396 22 SKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKRE-KKGS--EI-SLGVVDLTREG 82 (535)
Q Consensus 22 ~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~-~E~~--E~-~~~vvdlt~~~ 82 (535)
+-+..|+++..---++|..|+-+|.++.+|+..|..-|+.|+-. .+.+ |. ...--|++++.
T Consensus 30 ~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe~~~ks~p~i~ke~ 94 (206)
T 3oa7_A 30 EALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITIKNILQSRPDISAEE 94 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHHHHhhcCcccCHHH
Confidence 34578999999999999999999999999999999999999763 2222 22 12333666665
No 115
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.24 E-value=1.5e+02 Score=26.80 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=31.2
Q ss_pred hhhhhHHHHHHHHHHhhh---hhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 18 SELESKCLELESEIEKKK---TQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 18 ~E~e~r~~~Le~EI~Kk~---~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
+.||+.+..+-.+|...+ .+|+.|..+++++..+...+..|++.|..
T Consensus 4 s~LEd~L~~~r~~l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~ 53 (135)
T 2e7s_A 4 GSLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLRE 53 (135)
T ss_dssp --CCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 356666655555554433 46777777888888888888888888755
No 116
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.19 E-value=52 Score=33.56 Aligned_cols=44 Identities=32% Similarity=0.426 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHH
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALK 63 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lK 63 (535)
++.+|.+++..|..+......|++...+|..+...+++|++.|+
T Consensus 23 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~ 66 (405)
T 4b4t_J 23 FEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQ 66 (405)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36788888888887777666666666666555555555555443
No 117
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=25.03 E-value=3.9e+02 Score=24.82 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=14.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhh
Q 009396 98 ESGMKRAENEAESLKKLKELESR 120 (535)
Q Consensus 98 E~ekk~ae~E~E~wKk~~eLEs~ 120 (535)
..||..+--||++-=++|.|-.+
T Consensus 129 ~lEKe~a~~eid~~~eLKalQ~~ 151 (168)
T 3o0z_A 129 HSEKEKNNLEIDLNYKLKSLQQR 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 56677777777765555555444
No 118
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=24.93 E-value=81 Score=24.60 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDE 51 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~E 51 (535)
..++.+|+.++...+.+|..|......|..+
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888877778888877776666543
No 119
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=24.87 E-value=1.4e+02 Score=23.71 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhcc
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKG 68 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~ 68 (535)
++..+...+....+...++..|..|+.-++.+.-.+++.|...-+..+.
T Consensus 25 ~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 25 AEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666667777778888888888777777777766554443
No 120
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=24.20 E-value=81 Score=26.02 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELED 50 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~ 50 (535)
-|.+|+.+|+.=-+|-+-|-++|+.||+|--.
T Consensus 30 ~mkeR~eeL~~wqekQkeErefl~~kf~EAr~ 61 (70)
T 3brv_B 30 ILRERCEELLHFQASQREEKEFLMCKFQEARK 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999998543
No 121
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=23.63 E-value=1.6e+02 Score=25.09 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS 69 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~ 69 (535)
++|-+|..=-.|++-.+.-.-.||..|..+ |..-|+|++.||++.|..
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~km---Kq~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHRKM---KDAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHc
Confidence 556666656666666666666666666654 567899999999988754
No 122
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=22.94 E-value=1.1e+02 Score=28.85 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHH
Q 009396 20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELK 60 (535)
Q Consensus 20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~ 60 (535)
++.++..|..|.+....++..|.+.+.++..+|...|.+|=
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~ 177 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLY 177 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777777777777777777778888888888877763
No 123
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=22.25 E-value=1e+02 Score=25.24 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 38 FEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 38 ~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
...++.+..+|+.|-..|..++..|+.
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 124
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=22.10 E-value=71 Score=25.78 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHhhhhchHHHHH
Q 009396 36 TQFEKLEQKFKELEDEKNGIEEELK 60 (535)
Q Consensus 36 ~e~E~LE~K~kel~~EK~~le~El~ 60 (535)
.|++.|+.++..|+.++..|+..|.
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666655555553
No 125
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=21.86 E-value=1.9e+02 Score=23.51 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhc
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKK 67 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E 67 (535)
...|..||.++++.+.+.+..-+.+.+|-.=|..|+-|+...++-.|
T Consensus 34 q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 34 RRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 34567788888888888888778888888888888888887776443
No 126
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=21.51 E-value=86 Score=28.82 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHhhhhhHHHH
Q 009396 21 ESKCLELESEIEKKKTQFEKL 41 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~L 41 (535)
+.++.+|+.+.+|...+..-+
T Consensus 32 ~a~~~~le~e~~kl~~e~~i~ 52 (146)
T 2xnx_M 32 RATALEKELEEKKKALELAID 52 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544443333
No 127
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.50 E-value=2e+02 Score=24.58 Aligned_cols=42 Identities=24% Similarity=0.406 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 23 KCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 23 r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
.|..||.++++.+.+.+..-+.+.+|-.=|..|+-|+..-++
T Consensus 85 ~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 85 MIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666666666666655554
No 128
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.48 E-value=1.5e+02 Score=24.52 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=23.9
Q ss_pred chhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHH
Q 009396 17 CSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKAL 62 (535)
Q Consensus 17 C~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~l 62 (535)
|-++-.|+.+||.+=+-.+-....||+.+.+-..+...+..||+.+
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555544
No 129
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=20.93 E-value=1.5e+02 Score=22.45 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=24.9
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHH
Q 009396 18 SELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEEL 59 (535)
Q Consensus 18 ~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El 59 (535)
|.||+++..|| +-.+.|++||+-|-+|-.+.+.-|
T Consensus 1 ~dlEekv~~Le-------~~ld~LqTr~ArLlae~~ssq~Kl 35 (46)
T 3swy_A 1 GALEEKVEQLG-------SSLDTLQTRFARLLAEYNATQMKM 35 (46)
T ss_dssp CHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666665555 456788999999998888777543
No 130
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=20.79 E-value=1.5e+02 Score=24.99 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=25.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhc
Q 009396 29 SEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKK 67 (535)
Q Consensus 29 ~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E 67 (535)
-|+.+-+..+-.++-|+++-+..-..|+.|++.|+.+-+
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666677777777777777777777755433
No 131
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.53 E-value=93 Score=25.70 Aligned_cols=45 Identities=11% Similarity=0.283 Sum_probs=22.5
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHH
Q 009396 18 SELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKAL 62 (535)
Q Consensus 18 ~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~l 62 (535)
+.++.|+..||.-+.....-.=.|..++..|..|...|.|.+..+
T Consensus 2 ~s~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~ 46 (83)
T 2xdj_A 2 GSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQEN 46 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 346788888876443332222334455555555544444444333
No 132
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.27 E-value=1.3e+02 Score=28.58 Aligned_cols=18 Identities=6% Similarity=0.087 Sum_probs=11.4
Q ss_pred ccchhhhhHHHHHHHHHH
Q 009396 15 RKCSELESKCLELESEIE 32 (535)
Q Consensus 15 ~rC~E~e~r~~~Le~EI~ 32 (535)
.+|.++..|+..+...++
T Consensus 63 ~~~~~~~~k~~~~~~~L~ 80 (357)
T 3rrk_A 63 KRWEAVVSQAEQSLTVVG 80 (357)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 466677666666666555
Done!