Query 009396
Match_columns 535
No_of_seqs 26 out of 28
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 04:15:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009396.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009396hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nr5a1 a.25.6.1 (A:1-64) Hypo 42.9 5.8 0.00042 29.8 2.2 18 105-122 40-58 (64)
2 d1jt6a2 a.121.1.1 (A:73-187) M 41.8 6.4 0.00046 31.4 2.4 47 479-525 9-58 (115)
3 d2ncda_ c.37.1.9 (A:) Kinesin 35.7 9.5 0.00069 35.0 2.9 46 21-66 2-47 (368)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 32.4 76 0.0055 24.4 7.6 36 19-54 5-40 (133)
5 d1gqea_ e.38.1.1 (A:) Polypept 30.1 48 0.0035 30.9 7.0 46 19-64 10-69 (362)
6 d1nkla_ a.64.1.1 (A:) NK-lysin 29.0 34 0.0025 24.2 4.5 53 480-532 14-66 (78)
7 d1of9a_ a.64.1.4 (A:) Ameobapo 26.2 43 0.0031 23.9 4.6 53 480-532 14-67 (77)
8 d1fxka_ a.2.5.1 (A:) Prefoldin 26.1 40 0.0029 25.9 4.7 32 19-50 69-100 (107)
9 d1fxkc_ a.2.5.1 (C:) Prefoldin 24.4 46 0.0034 25.8 4.9 31 21-51 94-124 (133)
10 d1fxka_ a.2.5.1 (A:) Prefoldin 24.3 59 0.0043 24.9 5.4 40 25-64 4-43 (107)
11 d1seta1 a.2.7.1 (A:1-110) Sery 23.1 1.3E+02 0.0094 22.7 7.2 15 105-119 77-92 (110)
12 d1seta1 a.2.7.1 (A:1-110) Sery 23.1 67 0.0049 24.4 5.5 23 40-62 68-90 (110)
No 1
>d2nr5a1 a.25.6.1 (A:1-64) Hypothetical protein SO2669 {Shewanella oneidensis [TaxId: 70863]}
Probab=42.94 E-value=5.8 Score=29.78 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.8
Q ss_pred hHHHHHHH-HHHHHhhhhh
Q 009396 105 ENEAESLK-KLKELESRVS 122 (535)
Q Consensus 105 e~E~E~wK-k~~eLEs~vl 122 (535)
-.|+|.|- +.+|||-|+-
T Consensus 40 mqeveiwtnrikeledwlw 58 (64)
T d2nr5a1 40 MQEVEIWTNRIKELEDWLW 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 36899999 9999999975
No 2
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=41.77 E-value=6.4 Score=31.42 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=35.7
Q ss_pred hhHhhhhcCCCCChhhHhHHHHHhcCCCChhHHHHHH---HHhhhhhHHH
Q 009396 479 RLAEFLTDGDPQGELKKSVKELREYDPKGLELCRTFA---SRYSKQLFDI 525 (535)
Q Consensus 479 ~LAEFLlDGD~~GpLKKtv~dL~~~D~~g~~fc~~lA---~~ySKQLF~I 525 (535)
-+|||++.-|.+.||.|.+.++...=...+++.+++- .+|=.-|-+|
T Consensus 9 g~a~~~~~~~~~~Pl~~a~~EF~~~~~~~~e~~~~i~~lr~~y~~~~~~I 58 (115)
T d1jt6a2 9 LYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVI 58 (115)
T ss_dssp HHHHHHHHHHHTCTTHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999987777777766553 3444444444
No 3
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=35.72 E-value=9.5 Score=35.00 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~ 66 (535)
+.++.+|...+++...|.|.+..++.+...++..|.++|-+||-+-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gnI 47 (368)
T d2ncda_ 2 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNI 47 (368)
T ss_dssp CSSSGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCE
Confidence 4456788888999999999999999999888888899988887543
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=32.37 E-value=76 Score=24.45 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=20.8
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhc
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNG 54 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~ 54 (535)
+|...+.+|+.+|+....++..|+....++..-+..
T Consensus 5 eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~ 40 (133)
T d1fxkc_ 5 EIVAQLNIYQSQVELIQQQMEAVRATISELEILEKT 40 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666655544443
No 5
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=30.09 E-value=48 Score=30.94 Aligned_cols=46 Identities=20% Similarity=0.411 Sum_probs=24.3
Q ss_pred hhhhHHHHHHH--HHHhhhhhHHHHHH------------HHHHHHhhhhchHHHHHHHHH
Q 009396 19 ELESKCLELES--EIEKKKTQFEKLEQ------------KFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 19 E~e~r~~~Le~--EI~Kk~~e~E~LE~------------K~kel~~EK~~le~El~~lKr 64 (535)
+|.+|+..|.. .|.+++.+++.||. +++.+-.|+..|+.-++.++.
T Consensus 10 eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~ 69 (362)
T d1gqea_ 10 DLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQ 69 (362)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544 45566666666664 344444555555555554433
No 6
>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]}
Probab=28.98 E-value=34 Score=24.18 Aligned_cols=53 Identities=8% Similarity=0.139 Sum_probs=41.4
Q ss_pred hHhhhhcCCCCChhhHhHHHHHhcCCCChhHHHHHHHHhhhhhHHHhhccCCC
Q 009396 480 LAEFLTDGDPQGELKKSVKELREYDPKGLELCRTFASRYSKQLFDICKNKEDP 532 (535)
Q Consensus 480 LAEFLlDGD~~GpLKKtv~dL~~~D~~g~~fc~~lA~~ySKQLF~IYkNKEDP 532 (535)
+-.+|-+...+--+++-+..+=++=|.-...|..+..+|..++++...+..+|
T Consensus 14 ~~~~l~~~~t~~~I~~~l~~~C~~lp~~~~~C~~~v~~y~~~ii~~l~~~~~p 66 (78)
T d1nkla_ 14 LEDMVGPQPNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILTGKKP 66 (78)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHcCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 33455577777777777888777777656789999999999999988777666
No 7
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]}
Probab=26.20 E-value=43 Score=23.90 Aligned_cols=53 Identities=17% Similarity=0.158 Sum_probs=39.6
Q ss_pred hHhhhhcCCCCChhhHhHHHHHhcCCCC-hhHHHHHHHHhhhhhHHHhhccCCC
Q 009396 480 LAEFLTDGDPQGELKKSVKELREYDPKG-LELCRTFASRYSKQLFDICKNKEDP 532 (535)
Q Consensus 480 LAEFLlDGD~~GpLKKtv~dL~~~D~~g-~~fc~~lA~~ySKQLF~IYkNKEDP 532 (535)
.++-|+++..+--+++..+.+=++=|.. ...|..++.+|...+++...++.+|
T Consensus 14 ~~~~l~~~~t~~~I~~~l~~~C~~lp~~~~~~C~~~v~~y~~~ii~~l~~~~~p 67 (77)
T d1of9a_ 14 TLENLLTTKGADKVKDYISSLCNKASGFIATLCTKVLDFGIDKLIQLIEDKVDA 67 (77)
T ss_dssp HHHHHCSSSCSHHHHHHHHHHHTTCSSTTHHHHHHHHHHCHHHHHHHHHHTCCH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHCChHHHHHhHHHHHHHHHHHHHHHHHcCCH
Confidence 3455565555556677777777776544 5789999999999999998888776
No 8
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.13 E-value=40 Score=25.86 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 009396 19 ELESKCLELESEIEKKKTQFEKLEQKFKELED 50 (535)
Q Consensus 19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~ 50 (535)
+|++|+..|+.+|.+...+...|+.++.++..
T Consensus 69 ~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~ 100 (107)
T d1fxka_ 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655555555555555543
No 9
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.36 E-value=46 Score=25.77 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 009396 21 ESKCLELESEIEKKKTQFEKLEQKFKELEDE 51 (535)
Q Consensus 21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~E 51 (535)
+.|+.+|+..|++...+...++++..++..+
T Consensus 94 ~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~ 124 (133)
T d1fxkc_ 94 KSQKNELESTLQKMGENLRAITDIMMKLSPQ 124 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666655555555555555444
No 10
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.29 E-value=59 Score=24.85 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=22.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 009396 25 LELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64 (535)
Q Consensus 25 ~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr 64 (535)
.++..+++....++..+.++...|+.++.-.+.=|++|..
T Consensus 4 qe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~ 43 (107)
T d1fxka_ 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSR 43 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555555555666666666666665555555555544
No 11
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=23.08 E-value=1.3e+02 Score=22.69 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=6.0
Q ss_pred hHHHHHHH-HHHHHhh
Q 009396 105 ENEAESLK-KLKELES 119 (535)
Q Consensus 105 e~E~E~wK-k~~eLEs 119 (535)
-.++..+. .+.++|.
T Consensus 77 k~~i~~le~~~~~~~~ 92 (110)
T d1seta1 77 GEEAKRLEEALREKEA 92 (110)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 33444443 4444443
No 12
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=23.08 E-value=67 Score=24.40 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhhhchHHHHHHH
Q 009396 40 KLEQKFKELEDEKNGIEEELKAL 62 (535)
Q Consensus 40 ~LE~K~kel~~EK~~le~El~~l 62 (535)
.|-++.++|.++...++.+++.+
T Consensus 68 ~l~~~~k~lk~~i~~le~~~~~~ 90 (110)
T d1seta1 68 ALIARGKALGEEAKRLEEALREK 90 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
Done!