Query 009398
Match_columns 535
No_of_seqs 140 out of 162
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 12:38:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03254 XG_FTase: Xyloglucan 100.0 5E-188 1E-192 1478.4 43.2 455 48-502 20-476 (476)
2 PF05830 NodZ: Nodulation prot 99.8 1.1E-18 2.4E-23 177.7 17.3 144 306-470 146-300 (321)
3 PF10250 O-FucT: GDP-fucose pr 98.3 6.4E-06 1.4E-10 84.6 12.3 146 305-460 172-337 (351)
4 PF01531 Glyco_transf_11: Glyc 97.6 0.00044 9.6E-09 71.0 10.2 40 432-473 237-276 (298)
5 KOG3705 Glycoprotein 6-alpha-L 95.3 0.019 4E-07 62.0 4.6 157 283-461 317-483 (580)
6 KOG3849 GDP-fucose protein O-f 75.6 1.2E+02 0.0025 32.4 16.3 281 134-457 24-359 (386)
7 cd00550 ArsA_ATPase Oxyanion-t 27.8 82 0.0018 31.7 4.4 47 140-186 1-49 (254)
8 cd07018 S49_SppA_67K_type Sign 25.4 34 0.00075 33.8 1.2 54 434-487 90-154 (222)
9 cd02145 BluB Subfamily of the 24.9 1.7E+02 0.0037 27.8 5.8 51 335-400 10-60 (196)
10 PRK10727 DNA-binding transcrip 23.4 5E+02 0.011 26.4 9.2 114 346-470 30-144 (343)
11 PF02374 ArsA_ATPase: Anion-tr 21.9 98 0.0021 32.4 3.8 50 140-189 2-53 (305)
12 TIGR00706 SppA_dom signal pept 20.5 67 0.0015 31.4 2.1 47 435-481 75-132 (207)
No 1
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=100.00 E-value=4.8e-188 Score=1478.37 Aligned_cols=455 Identities=63% Similarity=1.088 Sum_probs=439.1
Q ss_pred CCCcccccCCCCCCcccccCCCCCCCCCCCcccchhhhcccccCCCCCCCHHHHHHHHHHHHhhccCCCCChhHHHHHHH
Q 009398 48 PTSEDEINGENQLSSDKLLGGLLAPNFTKRDCLSRYQSISYRKSSPYVPSLYLVSKLREYEKLHNRCGPDTESYKNSIKD 127 (535)
Q Consensus 48 ~~~~~~~~~~~~~~~d~llggll~~~fde~sC~SRy~s~lyrk~s~~~pSpyL~s~LR~YE~lHrrCgp~t~~Y~~a~~~ 127 (535)
..++++....+...+|+||||||++||||+||+||||+++|||+++|+|||||++|||+||+|||||||||++|++|++|
T Consensus 20 ~~~~~~~~~~~~~~~d~llgglL~~~fde~sC~SRy~~~~yrk~s~~~pSpyL~skLR~YE~lHrrCgp~t~~y~~a~~~ 99 (476)
T PF03254_consen 20 SDSSSSSSQSAESPNDKLLGGLLSPGFDERSCLSRYQSSLYRKPSPHKPSPYLVSKLRRYEALHRRCGPGTESYNKAVEQ 99 (476)
T ss_pred cCCCCCcCCccccccccccccccCCCCCcccccchhhhhhhcCCCCCCCCHHHHHHHHHHHHHHhhhCCCchhhHHHHHH
Confidence 33444556677788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCceEEEEeccCCchhhHHHHHHHHHHHHHhCceeeecCCCcccccccCCCCCCcccCCCCCCcccccccc
Q 009398 128 MVSGQNDSSSECRYVVWIARAGLGNRILSIASAFLYALLTNRVLLIDEEPEMANLFCEPFPNATWLLPKDFPFMYRISRF 207 (535)
Q Consensus 128 l~s~~~~~~~~CkYlVw~~~~GLGNRmLslaSaFLYALLT~RVLLVd~~~d~~~LFCEPFpgssWlLP~dFP~~~~~~~~ 207 (535)
|++|++++.++||||||++++|||||||+||||||||||||||||||+++||++|||||||||||+||+|||+.++++++
T Consensus 100 L~s~~~~~~~~CkYvVw~~~~GLGNRmLslaSaFLYAlLT~RVLLV~~~~d~~~LFCEPFpgsSWlLP~dFP~~~~~~~~ 179 (476)
T PF03254_consen 100 LRSGHSDGTSECKYVVWIPYSGLGNRMLSLASAFLYALLTNRVLLVDPGKDMADLFCEPFPGSSWLLPPDFPLKNQLNGF 179 (476)
T ss_pred HhccCCCCCCCCcEEEEecCCchHHHHHHHHHHHHHHHHhCcEEEEecCCchhhhhcCCCCCCceeCcCCCCchhhccCC
Confidence 99998888999999999999999999999999999999999999999999999999999999999999999999878999
Q ss_pred cccchhhHHHHhhcCCCCCCCCCCCcEEEEEeeccCCCCCceeeeccccccccCcCEEEEeecceeecccccccchHHHH
Q 009398 208 KQNYAKSYGNMLKKNKINASTELLPTHLYLYLCNDYDHHDKLFFCDQDQTILRNIPWLIMKSNLYFLPSLFLMSSFEEEL 287 (535)
Q Consensus 208 ~~~~~~syg~~l~n~~~~~~~~~~p~~vyl~L~~~~~~~d~~FfCd~~q~~L~~vpWL~~~Sd~YFvP~LFl~P~f~~eL 287 (535)
+.++++|||||++|+.++.+...+|+|+|+||+|+++++|++||||++|++|+|||||+|+||+||||+||++|+||+||
T Consensus 180 ~~~~~~sygnml~~~~~~~~~~~~p~~vyl~L~~~~~~~d~~FfCd~~Q~~L~~vpWLil~sd~YFvP~LFl~P~f~~eL 259 (476)
T PF03254_consen 180 SQESAESYGNMLKNKSINNSDNSLPPYVYLHLEHDYDDHDKLFFCDEDQALLRKVPWLILRSDQYFVPSLFLVPSFRPEL 259 (476)
T ss_pred CCCchHHHHHHHhcCCccccccCCCceeEEEecccCCcCCCceecCccHHHHhcCCeEEEecCcceeehhhhchHHHHHH
Confidence 99999999999999999887678999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCccchhhhhhccccCCchhHHHHHHHHHHhhhccccceeEEEEEeecCCCCchHHHHHHHHhHHhhccCCCCccc
Q 009398 288 DKLFPDKEMVFHHLGRYLFHPSNQVWKLITSYYKKYLADAEERVGIQIRIFHKNSSPFQQVMDQILSCTDKEKLLPQVDM 367 (535)
Q Consensus 288 ~~lFP~kd~vFhhL~RYLfhPsn~VW~~Vtrfy~ayLA~a~~rIGIQIR~f~~~~~p~~~~~~qIl~Ct~~e~lLP~v~~ 367 (535)
++|||+||+||||||||||||+|+||++|+|||++|||+|++|||||||+|+.+++++++++|||++|+++|||||+|.+
T Consensus 260 ~~lFP~k~tvFhhL~RYLfhPsN~VW~~Itryy~ayLa~Ad~riGIQIRvf~~~~~~~~~~~dqIl~C~~~e~LLP~v~~ 339 (476)
T PF03254_consen 260 DRLFPEKDTVFHHLGRYLFHPSNQVWGLITRYYDAYLAKADERIGIQIRVFDPKPGPFQHVLDQILSCTQQEKLLPEVVD 339 (476)
T ss_pred HHhcCChhHHHHHHHHHHcCCCchhHHHHHHHHHHHccCcCceeEEEEEecCCCCCcchhHHHHHHHHHhhcccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999943
Q ss_pred -CCC-cccCCCCCceeEEEEeecChhHHHHHHHHhhcCCccCCceEEEEcCCcchhccccchhhhHHHHHHHHHHhcCCc
Q 009398 368 -GKS-IVAPFGKGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTQHTMKNVHNQKAWAEINLLSMMDV 445 (535)
Q Consensus 368 -~~~-~~~~~~~~~~kaVlVtSL~~~y~e~lk~~Y~~~~t~~Ge~V~V~qPShee~Q~~~~~~h~~kALaEmyLLS~sD~ 445 (535)
++. +++++++.++||||||||++||||+||+|||+++|++||+|+||||||||+|++++++|||||||||||||+||+
T Consensus 340 ~~~~~~~~~~~~~~~kaVlVtSL~~~yye~lr~~Y~~~~t~tGe~V~V~QpShe~~Q~~~~~~h~~kAlaEmyLLS~sD~ 419 (476)
T PF03254_consen 340 TQEPAASSSSKSQKSKAVLVTSLYSEYYEKLRNMYWEHPTVTGEVVGVHQPSHEEYQQFGDNMHNQKALAEMYLLSLSDV 419 (476)
T ss_pred cccccccccCCCCceEEEEEEeCCHHHHHHHHHHHhcCCCcCCcEEEEECCCCcccccccccchHHHHHHHHHHHHhccc
Confidence 333 456778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCchhHHHHhhcCCcceEeeccCCCCCCCCCcccCCCCCCCCCCCCcccccc
Q 009398 446 LVTSAGSTFGYVAQGLGGKRPWILYKTETQKIPDPVCGRAMSMEPCFHCPQVYDCKA 502 (535)
Q Consensus 446 LVtS~~STFGYVAqgLgGl~PwiL~~~~~~~~~~ppC~r~~S~EPCfh~pp~ydC~~ 502 (535)
||||+|||||||||||||||||||++|+|++++||||+|++|||||||+||+|||+|
T Consensus 420 LVTS~~STFGYVAqgLgGl~PwiL~~~~~~~~~~ppC~r~~S~EPCfh~pp~~dC~a 476 (476)
T PF03254_consen 420 LVTSGWSTFGYVAQGLGGLRPWILYKPENQTVPDPPCVRAMSMEPCFHAPPFYDCKA 476 (476)
T ss_pred eEecCCCCchhHHHhhcCCCceEEecCcccCCCCCCCcCCCCCCCCCCCCCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999986
No 2
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=99.80 E-value=1.1e-18 Score=177.71 Aligned_cols=144 Identities=18% Similarity=0.268 Sum_probs=88.7
Q ss_pred cCCchhHHHHHHHHHHhhhccccceeEEEEEeecCCC-----CchH---HHHHHHHhHHhhccCCCCcccCCCcccCCCC
Q 009398 306 FHPSNQVWKLITSYYKKYLADAEERVGIQIRIFHKNS-----SPFQ---QVMDQILSCTDKEKLLPQVDMGKSIVAPFGK 377 (535)
Q Consensus 306 fhPsn~VW~~Vtrfy~ayLA~a~~rIGIQIR~f~~~~-----~p~~---~~~~qIl~Ct~~e~lLP~v~~~~~~~~~~~~ 377 (535)
+.|+..|-.+|..+|+.++++ ...||||||..+.+. ..+. .-+++|..-..+.+.++ .
T Consensus 146 lkpR~eIqarID~iy~ehf~g-~~~IGVHVRhGngeD~~~h~~~~~D~e~~L~~V~~ai~~ak~~~-------------~ 211 (321)
T PF05830_consen 146 LKPRPEIQARIDAIYREHFAG-YSVIGVHVRHGNGEDIMDHAPYWADEERALRQVCTAIDKAKALA-------------P 211 (321)
T ss_dssp S-B-HHHHHHHHHHHHHHTTT-SEEEEEEE---------------HHHHHHHHHHHHHHHHHHTS---------------
T ss_pred CCCCHHHHHHHHHHHHHHcCC-CceEEEEEeccCCcchhccCccccCchHHHHHHHHHHHHHHhcc-------------C
Confidence 689999999999999999994 568999999775421 1221 23666655555544443 2
Q ss_pred CceeEEEEeecChhHHHHHHHHhhcCCccCCceEEEEcCCcchhccccc--hhhhHHHHHHHHHHhcCCcee-ecCCCch
Q 009398 378 GKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTQHTMK--NVHNQKAWAEINLLSMMDVLV-TSAGSTF 454 (535)
Q Consensus 378 ~~~kaVlVtSL~~~y~e~lk~~Y~~~~t~~Ge~V~V~qPShee~Q~~~~--~~h~~kALaEmyLLS~sD~LV-tS~~STF 454 (535)
.+.+.|||+|++++..+++|..|...-+. ..-+++++.+.-+..+ ..+...||+||||||.||+|| .|+.|+|
T Consensus 212 ~k~~~IFLATDSaeVid~fr~~FPdiiti----~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~LLSrCD~LIr~~ptS~F 287 (321)
T PF05830_consen 212 PKPVRIFLATDSAEVIDQFRKKFPDIITI----PKQFPASQAGPLHSAAVGIEGGESALIDMYLLSRCDYLIRFPPTSAF 287 (321)
T ss_dssp SS-EEEEEEES-HHHHHHHHHHSTTEE--------------------HHHHHHHHHHHHHHHHHHTTSSEEEEESTT-GG
T ss_pred CCCeeEEEecCcHHHHHHHHHHCCCeEEc----ccccCCCCCCcCcccccccchHHHHHHHHHHHHhCCeEEEcCCCchh
Confidence 45689999999999999999999642221 1126677764332222 134678999999999999999 8999999
Q ss_pred hHHHHhhcCCcceEee
Q 009398 455 GYVAQGLGGKRPWILY 470 (535)
Q Consensus 455 GYVAqgLgGl~PwiL~ 470 (535)
|-+|+=++ |=++-
T Consensus 288 sr~asl~~---pr~~~ 300 (321)
T PF05830_consen 288 SRYASLFV---PRVIE 300 (321)
T ss_dssp GHHHHHH----SEEEE
T ss_pred hhHHHHhc---chhee
Confidence 99999777 77763
No 3
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=98.30 E-value=6.4e-06 Score=84.63 Aligned_cols=146 Identities=21% Similarity=0.264 Sum_probs=67.5
Q ss_pred ccCCchhHHHHHHHHHHhhhccccceeEEEEEee-cC----CCCchHHHHHHHHhHHhhccC----------CCCcccCC
Q 009398 305 LFHPSNQVWKLITSYYKKYLADAEERVGIQIRIF-HK----NSSPFQQVMDQILSCTDKEKL----------LPQVDMGK 369 (535)
Q Consensus 305 LfhPsn~VW~~Vtrfy~ayLA~a~~rIGIQIR~f-~~----~~~p~~~~~~qIl~Ct~~e~l----------LP~v~~~~ 369 (535)
.+++++.|-.+.++|-+..+++...=||||+|+- |. ......+.+ +-..|..+..+ +|......
T Consensus 172 ~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~~~~C~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 250 (351)
T PF10250_consen 172 YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDWFSACEFKGERHLL-ASPRCWGKKSINPEKKRRNGCCPSTPQEA 250 (351)
T ss_dssp G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHHHHHHCT-T----T-TTHHHH-GGGTT-----HHHHS--HHHHH
T ss_pred EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCchHhhcccCCchHHH-HHhHhhccccccchhhhhcCCCCChHHHH
Confidence 6899999999999999999966677799999997 54 000000001 01222211111 12110000
Q ss_pred C-cccCCCCCceeEEEEeecChh----HHHHHHHHhhcCCccCCceEEEEcCCcchhccccchhhhHHHHHHHHHHhcCC
Q 009398 370 S-IVAPFGKGKSKAVLITSLIPS----YYEKMKNMYLKHPTLNGEVVAVYQASHEVTQHTMKNVHNQKAWAEINLLSMMD 444 (535)
Q Consensus 370 ~-~~~~~~~~~~kaVlVtSL~~~----y~e~lk~~Y~~~~t~~Ge~V~V~qPShee~Q~~~~~~h~~kALaEmyLLS~sD 444 (535)
. .....+..+.+.|+|||+... ..+.+++++.+.-+ .+.+. +++|.+.+.+ ++.|++|+++++.||
T Consensus 251 ~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~--~~~~~----~~~~~~~~~~---~~~a~vD~~i~~~s~ 321 (351)
T PF10250_consen 251 KQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVT--KDDLL----SHEELEPLND---DQLAMVDQEICSRSD 321 (351)
T ss_dssp HHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHG--GGT------EE--S--------S--HHHHHHHHHHSS
T ss_pred HHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEe--ccccC----CHHHhhhccc---cchhHHHHHHHhcCC
Confidence 0 000112234589999999932 23556666643221 11222 2455555544 689999999999999
Q ss_pred ceeecCCCchhHHHHh
Q 009398 445 VLVTSAGSTFGYVAQG 460 (535)
Q Consensus 445 ~LVtS~~STFGYVAqg 460 (535)
+.|.|..|||...-.+
T Consensus 322 ~Figt~~Stfs~~i~~ 337 (351)
T PF10250_consen 322 VFIGTCGSTFSSNIAR 337 (351)
T ss_dssp EEEE-TT-HHHHHHHH
T ss_pred EEEecCcchhHHHhhc
Confidence 9999999999876544
No 4
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=97.55 E-value=0.00044 Score=71.02 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCceeecCCCchhHHHHhhcCCcceEeeccC
Q 009398 432 KAWAEINLLSMMDVLVTSAGSTFGYVAQGLGGKRPWILYKTE 473 (535)
Q Consensus 432 kALaEmyLLS~sD~LVtS~~STFGYVAqgLgGl~PwiL~~~~ 473 (535)
.++.||+|||.||+.|.| -||||.-|+-|++= +=+.+.|.
T Consensus 237 ~~~~Dl~lms~C~~~Iis-nSTFswW~a~L~~~-~~i~i~p~ 276 (298)
T PF01531_consen 237 SPYEDLYLMSQCKHFIIS-NSTFSWWAAYLSKN-DKIVIAPI 276 (298)
T ss_pred CHHHHHHHHHhCCcEEEC-CChHHHHHHHHCCC-CCEEEECC
Confidence 678899999999999999 59999999999884 44443443
No 5
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.019 Score=61.95 Aligned_cols=157 Identities=20% Similarity=0.263 Sum_probs=96.1
Q ss_pred hHHHHhhcCCCccch--hhhhhccccCCchhHHHHHHHHHHhhhccccceeEEEEEeecCCCC-----chHHHHHHH---
Q 009398 283 FEEELDKLFPDKEMV--FHHLGRYLFHPSNQVWKLITSYYKKYLADAEERVGIQIRIFHKNSS-----PFQQVMDQI--- 352 (535)
Q Consensus 283 f~~eL~~lFP~kd~v--FhhL~RYLfhPsn~VW~~Vtrfy~ayLA~a~~rIGIQIR~f~~~~~-----p~~~~~~qI--- 352 (535)
+-+.|.++--+.- | -.+...||++|.+..-..++.=-++ |.-...-||+|||..+.-.+ +.++.|.-+
T Consensus 317 La~rL~rlHgdP~-vwwVgqFikYL~Rpqp~t~~~l~~a~k~-lg~~~PivGvhvRRTDKVGTEAAfH~~eEYM~~vE~~ 394 (580)
T KOG3705|consen 317 LAERLTRLHGDPP-VWWVGQFIKYLMRPQPATQEKLDKALKS-LGLDKPIVGVHVRRTDKVGTEAAFHALEEYMEWVEIW 394 (580)
T ss_pred HHHHHHHhcCCCc-eeeHHHHHHHHhCCChhhHHHHHHHHHh-CCCCCceeeEEEEecccccchhhhhhHHHHHHHHHHH
Confidence 3445556655553 4 2566789999999988777654332 33334679999999885422 234444322
Q ss_pred HhHHhhccCCCCcccCCCcccCCCCCceeEEEEeecChhHHHHHHHHhhcCCccCCceEEEEcCCcchhccccchhhhHH
Q 009398 353 LSCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTQHTMKNVHNQK 432 (535)
Q Consensus 353 l~Ct~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lk~~Y~~~~t~~Ge~V~V~qPShee~Q~~~~~~h~~k 432 (535)
+.-..+ +- ..-.+.||++|+.+...+..|+.|.+...-+..-|.-..--|-.|. +. .-+-
T Consensus 395 f~~le~-rg---------------~~~~rRiflAsDDp~vv~EAk~kYPnYe~igd~eia~~A~l~nRYT---d~-sL~G 454 (580)
T KOG3705|consen 395 FKVLEK-RG---------------KPLERRIFLASDDPTVVPEAKNKYPNYEVIGDTEIAKTAQLNNRYT---DA-SLMG 454 (580)
T ss_pred HHHHHH-hC---------------CchhheEEEecCCchhchHhhccCCCcEEeccHHHHHHhhccccch---hh-hhhh
Confidence 111111 10 1124799999999999999999998764332211211110011111 11 2345
Q ss_pred HHHHHHHHhcCCceeecCCCchhHHHHhh
Q 009398 433 AWAEINLLSMMDVLVTSAGSTFGYVAQGL 461 (535)
Q Consensus 433 ALaEmyLLS~sD~LVtS~~STFGYVAqgL 461 (535)
-..||++||.+|.||.|=.|----||.-+
T Consensus 455 vIlDIh~LS~~d~LVCTFSSQVCRvaYEi 483 (580)
T KOG3705|consen 455 VILDIHILSKVDYLVCTFSSQVCRVAYEI 483 (580)
T ss_pred eeeeeeeecccceEEEechHHHHHHHHHH
Confidence 67899999999999999988877777543
No 6
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=75.63 E-value=1.2e+02 Score=32.38 Aligned_cols=281 Identities=19% Similarity=0.266 Sum_probs=139.3
Q ss_pred CCCCCceEEEEeccCC-chhhHHHHHHHHHHHHHhCceeeecCCCcccccccCCCCCC-cccCCCCCCcccccccccccc
Q 009398 134 DSSSECRYVVWIARAG-LGNRILSIASAFLYALLTNRVLLIDEEPEMANLFCEPFPNA-TWLLPKDFPFMYRISRFKQNY 211 (535)
Q Consensus 134 ~~~~~CkYlVw~~~~G-LGNRmLslaSaFLYALLT~RVLLVd~~~d~~~LFCEPFpgs-sWlLP~dFP~~~~~~~~~~~~ 211 (535)
++.+.-.||++-|+-| .||+.=-.....-+|=+-||.|.+.+.-+.. . |.+ +-..|-.| | |..+.
T Consensus 24 ~~~DP~GYl~yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiEy~----~--pe~~n~~vpf~~-----y--F~vep 90 (386)
T KOG3849|consen 24 GSWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWIEYK----H--PETKNLMVPFEF-----Y--FQVEP 90 (386)
T ss_pred CCCCCCccEEEccccccccchHHHHHHHHHHHHHhcccccCCcchhcc----C--Ccccccccchhh-----e--eeccc
Confidence 3456778999998766 9999988888889999999999987542211 0 111 11111111 1 11222
Q ss_pred hhhHHHHhhcC----CC-CCCCCCCCcEEEEEeeccCCCCCce---------e--eeccccccccCcCEEEEeecceeec
Q 009398 212 AKSYGNMLKKN----KI-NASTELLPTHLYLYLCNDYDHHDKL---------F--FCDQDQTILRNIPWLIMKSNLYFLP 275 (535)
Q Consensus 212 ~~syg~~l~n~----~~-~~~~~~~p~~vyl~L~~~~~~~d~~---------F--fCd~~q~~L~~vpWL~~~Sd~YFvP 275 (535)
-..|-+++... .+ .+....-|...|-+=.......|+- | |+|+. -+-+-.+.||.+
T Consensus 91 l~~YhRVitm~dFm~klapthwp~~~Rva~c~k~a~qr~pdkp~Ch~KeGNPFGPfWDqf--------hvsFv~sE~f~~ 162 (386)
T KOG3849|consen 91 LAKYHRVITMQDFMKKLAPTHWPGTPRVAICDKSAAQRSPDKPGCHSKEGNPFGPFWDQF--------HVSFVGSEYFGD 162 (386)
T ss_pred HhhhhhheeHHHHHHHhCcccCCCCcceeeeehhhhccCCCCCCCcccCCCCCCCchhhe--------Eeeeeccccccc
Confidence 22233222110 00 1111112222222111111111111 1 22222 234446778888
Q ss_pred ccccccch--HHHHhhcCCCccc----------hh------hhhhccccCCchhHHHHHHHHHHhhhccccceeEEEEEe
Q 009398 276 SLFLMSSF--EEELDKLFPDKEM----------VF------HHLGRYLFHPSNQVWKLITSYYKKYLADAEERVGIQIRI 337 (535)
Q Consensus 276 ~LFl~P~f--~~eL~~lFP~kd~----------vF------hhL~RYLfhPsn~VW~~Vtrfy~ayLA~a~~rIGIQIR~ 337 (535)
-=|-...- ++.-..=||.++. -| -.|-+|| .=|..+-+.-+.|-++.|++ .=|||+.|.
T Consensus 163 i~Fd~~~~~~~~kW~~kfp~eeyPVLAf~gAPA~FPv~~e~~~lQkYl-~WS~r~~e~~k~fI~a~L~r--pfvgiHLRn 239 (386)
T KOG3849|consen 163 IGFDLNQMGSRKKWLEKFPSEEYPVLAFSGAPAPFPVKGEVWSLQKYL-RWSSRITEQAKKFISANLAR--PFVGIHLRN 239 (386)
T ss_pred cccchhhcchHHHHHhhCCcccCceeeecCCCCCCccccccccHHHHH-HHHHHHHHHHHHHHHHhcCc--ceeEEEeec
Confidence 76644333 1222233444431 11 1234553 33445555667788888884 679999996
Q ss_pred ecCC--------CCchHHHHHHHHhHHhhcc----CCCCcccCC-Cc-----ccCCCC-CceeEEEEeecChhHHHHHHH
Q 009398 338 FHKN--------SSPFQQVMDQILSCTDKEK----LLPQVDMGK-SI-----VAPFGK-GKSKAVLITSLIPSYYEKMKN 398 (535)
Q Consensus 338 f~~~--------~~p~~~~~~qIl~Ct~~e~----lLP~v~~~~-~~-----~~~~~~-~~~kaVlVtSL~~~y~e~lk~ 398 (535)
..+- .+--++++.. -.|.-..+ |-|++-..+ .. ...-++ ..-|+|+|+|++.-|.++|..
T Consensus 240 g~DWvraCehikd~~~~hlfAS-pQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~dakSVfVAsDs~hmi~Eln~ 318 (386)
T KOG3849|consen 240 GADWVRACEHIKDTTNRHLFAS-PQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIGDAKSVFVASDSDHMIDELNE 318 (386)
T ss_pred CchHHHHHHHhcccCCCccccC-hhhccccccccccchhhhCccHHHHHHHHHHHHhhhcccceEEEeccchhhhHHHHH
Confidence 4311 0000111110 12222111 111110000 00 000011 135899999999999998886
Q ss_pred HhhcCCccCCceEEEEcCCcchhccccchhhhHHHHHHHHHHhcCCceeecCCCchhHH
Q 009398 399 MYLKHPTLNGEVVAVYQASHEVTQHTMKNVHNQKAWAEINLLSMMDVLVTSAGSTFGYV 457 (535)
Q Consensus 399 ~Y~~~~t~~Ge~V~V~qPShee~Q~~~~~~h~~kALaEmyLLS~sD~LVtS~~STFGYV 457 (535)
..-.. .|+||.--. ..+-.|.++|.-+|..|.---|||.-.
T Consensus 319 aL~~~------~i~vh~l~p------------dd~y~dLaIlGqadhFiGNCvSsfsaf 359 (386)
T KOG3849|consen 319 ALKPY------EIEVHRLEP------------DDMYTDLAILGQADHFIGNCVSSFSAF 359 (386)
T ss_pred hhccc------ceeEEecCc------------ccchhhhhhhcccchhhhhhHHHHHHH
Confidence 54332 366663222 246689999999999999888888654
No 7
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=27.76 E-value=82 Score=31.75 Aligned_cols=47 Identities=26% Similarity=0.493 Sum_probs=37.9
Q ss_pred eEEEEeccCCchhhHHHHHHHHHHHHHhCceeeecCC--CcccccccCC
Q 009398 140 RYVVWIARAGLGNRILSIASAFLYALLTNRVLLIDEE--PEMANLFCEP 186 (535)
Q Consensus 140 kYlVw~~~~GLGNRmLslaSaFLYALLT~RVLLVd~~--~d~~~LFCEP 186 (535)
|+++..+-.|-|--.++.+.|..+|-.-.|||||+.. ..+.++|--+
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~sl~~~~~~~ 49 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSDSFNQE 49 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcccHHHHhCCc
Confidence 5778888899999999999999999999999999743 3455555443
No 8
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=25.36 E-value=34 Score=33.80 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCceeecCCCchhHHHHhhc-----------CCcceEeeccCCCCCCCCCcccCCC
Q 009398 434 WAEINLLSMMDVLVTSAGSTFGYVAQGLG-----------GKRPWILYKTETQKIPDPVCGRAMS 487 (535)
Q Consensus 434 LaEmyLLS~sD~LVtS~~STFGYVAqgLg-----------Gl~PwiL~~~~~~~~~~ppC~r~~S 487 (535)
-+.-||.|.||.++.++.+.||-++-... |+++-++...+.....+|-....+|
T Consensus 90 sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s 154 (222)
T cd07018 90 QGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMS 154 (222)
T ss_pred chhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCC
Confidence 35789999999999999999988754322 8999988766655555555444443
No 9
>cd02145 BluB Subfamily of the nitroreductase family that includes BluB protein in Rhodobacter capsulatus is involved in the conversion of cobinamide to cobalamin in Cobalamin (vitamin B12) biosynthesis. Nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.
Probab=24.91 E-value=1.7e+02 Score=27.84 Aligned_cols=51 Identities=16% Similarity=0.411 Sum_probs=32.6
Q ss_pred EEeecCCCCchHHHHHHHHhHHhhccCCCCcccCCCcccCCCCCceeEEEEeecChhHHHHHHHHh
Q 009398 335 IRIFHKNSSPFQQVMDQILSCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSYYEKMKNMY 400 (535)
Q Consensus 335 IR~f~~~~~p~~~~~~qIl~Ct~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lk~~Y 400 (535)
||.|+.+++| ++.+++|+.+++. ++++.|.+.-.++|.+. ++-.++|++..
T Consensus 10 iR~F~~~~V~-~e~i~~ileaA~~-------------APS~~N~Qpw~fvVv~~-~~~~~~l~~~~ 60 (196)
T cd02145 10 VRHFFPDPVP-EEVLERLLAAAHH-------------APSVGLSQPWRFIRVRD-PATRAAIKALF 60 (196)
T ss_pred hhcCCCCCCC-HHHHHHHHHHHHh-------------CCCcCCCCCeEEEEEcC-HHHHHHHHHHH
Confidence 5889887655 6777889888864 22344555556666644 45566666554
No 10
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=23.43 E-value=5e+02 Score=26.36 Aligned_cols=114 Identities=9% Similarity=0.044 Sum_probs=64.6
Q ss_pred HHHHHHHHhHHhhccCCCCcccCCCcccCCCCCceeEEEEeecChhHHHHHHHHhhcCCccCCceEEEEcCCcchhcccc
Q 009398 346 QQVMDQILSCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTQHTM 425 (535)
Q Consensus 346 ~~~~~qIl~Ct~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lk~~Y~~~~t~~Ge~V~V~qPShee~Q~~~ 425 (535)
++.-++|++.+.+-+--|+....+ ...+..+.++|++.++...|+..+.+-.-+.....|-.+-+. .+.+..
T Consensus 30 ~~tr~rV~~~a~elgY~pn~~ar~---l~~~~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~-~~~~~~---- 101 (343)
T PRK10727 30 EASRLAVHSAMESLSYHPNANARA---LAQQSTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIG-NGYHNE---- 101 (343)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHh---hhhCCCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCCEEEEE-eCCCCH----
Confidence 566788999999877777642211 122345678888888777777665554433333334334343 222211
Q ss_pred chhhhHHHHHHHHHHhcCCceeecCCC-chhHHHHhhcCCcceEee
Q 009398 426 KNVHNQKAWAEINLLSMMDVLVTSAGS-TFGYVAQGLGGKRPWILY 470 (535)
Q Consensus 426 ~~~h~~kALaEmyLLS~sD~LVtS~~S-TFGYVAqgLgGl~PwiL~ 470 (535)
..+....++.+-.-.|.+|..+.. +--.+.+-..|+.|.|+.
T Consensus 102 ---~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~p~vV~i 144 (343)
T PRK10727 102 ---QKERQAIEQLIRHRCAALVVHAKMIPDAELASLMKQIPGMVLI 144 (343)
T ss_pred ---HHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHhcCCCEEEE
Confidence 123445566666788999887542 223344445566556664
No 11
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=21.93 E-value=98 Score=32.40 Aligned_cols=50 Identities=20% Similarity=0.374 Sum_probs=40.8
Q ss_pred eEEEEeccCCchhhHHHHHHHHHHHHHhCceeee--cCCCcccccccCCCCC
Q 009398 140 RYVVWIARAGLGNRILSIASAFLYALLTNRVLLI--DEEPEMANLFCEPFPN 189 (535)
Q Consensus 140 kYlVw~~~~GLGNRmLslaSaFLYALLT~RVLLV--d~~~d~~~LFCEPFpg 189 (535)
|++++.+-+|-|---+|.+.|.-+|---.||||| |+...++|+|.-...+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~~ 53 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLGG 53 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--BS
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCCC
Confidence 6888899999999999999999999888899999 5666888999776543
No 12
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=20.45 E-value=67 Score=31.41 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=35.1
Q ss_pred HHHHHHhcCCceeecCCCchhHHH---Hhh--------cCCcceEeeccCCCCCCCCC
Q 009398 435 AEINLLSMMDVLVTSAGSTFGYVA---QGL--------GGKRPWILYKTETQKIPDPV 481 (535)
Q Consensus 435 aEmyLLS~sD~LVtS~~STFGYVA---qgL--------gGl~PwiL~~~~~~~~~~pp 481 (535)
+-.||.+.||.++.++-+.||-++ +++ -|++++++...+.....+|-
T Consensus 75 ~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~ 132 (207)
T TIGR00706 75 GGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPT 132 (207)
T ss_pred HHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCC
Confidence 678999999999999999887654 333 48999999666554445543
Done!