Query 009398
Match_columns 535
No_of_seqs 140 out of 162
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:18:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hhc_A NODZ, nodulation fucosy 100.0 2.9E-41 9.8E-46 341.4 9.1 279 137-465 2-300 (330)
2 2de0_X Alpha-(1,6)-fucosyltran 99.6 1E-14 3.5E-19 158.2 20.3 204 297-525 265-481 (526)
3 3zy2_A Putative GDP-fucose pro 97.9 3E-05 1E-09 80.5 9.8 145 291-459 178-341 (362)
4 4ap5_A GDP-fucose protein O-fu 97.2 0.018 6E-07 59.9 19.7 99 331-459 268-373 (408)
5 2cpd_A Apobec-1 stimulating pr 28.8 1.2E+02 0.0041 24.0 6.1 58 378-437 13-71 (99)
6 3kjx_A Transcriptional regulat 18.2 4.5E+02 0.015 25.0 9.0 113 346-470 39-153 (344)
7 3zy2_A Putative GDP-fucose pro 16.2 1.3E+02 0.0046 31.3 4.8 39 137-175 6-45 (362)
8 2dnq_A RNA-binding protein 4B; 15.7 2.1E+02 0.0071 22.1 4.9 56 378-437 6-62 (90)
9 2e5j_A Methenyltetrahydrofolat 15.0 3.7E+02 0.013 20.9 6.3 60 377-437 16-76 (97)
10 2dgt_A RNA-binding protein 30; 14.6 2.2E+02 0.0075 22.0 4.8 57 377-437 7-64 (92)
No 1
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=100.00 E-value=2.9e-41 Score=341.39 Aligned_cols=279 Identities=18% Similarity=0.208 Sum_probs=195.5
Q ss_pred CCceEEEEeccCCchhhHHHHHHHHHHHHHhCceeeecCCCcccccccCCCCCCcccCCCCCCcccccccccccchhhHH
Q 009398 137 SECRYVVWIARAGLGNRILSIASAFLYALLTNRVLLIDEEPEMANLFCEPFPNATWLLPKDFPFMYRISRFKQNYAKSYG 216 (535)
Q Consensus 137 ~~CkYlVw~~~~GLGNRmLslaSaFLYALLT~RVLLVd~~~d~~~LFCEPFpgssWlLP~dFP~~~~~~~~~~~~~~syg 216 (535)
+.||||||...+||||||+.+||||+||++|+|+|+|||.+ ++||+ .|+++|+ |.+||-.. ++++
T Consensus 2 ~~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~---~~y~~-~~~~~~f-p~~F~~v~----------~~~~ 66 (330)
T 2hhc_A 2 TKERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG---SCYVE-QPFSNAF-PAFFEPVE----------DIAG 66 (330)
T ss_dssp CCCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT---CTTCS-STTSBSH-HHHBCCCS----------EETT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC---cccCC-CCccccC-cccccchh----------hhcc
Confidence 47999999999999999999999999999999999999987 57996 4678887 88886211 1233
Q ss_pred HHhh-cCCCCCCC---CCCCcEEEEEeeccCCCCCceeeecccccc------ccCcCEEEEeecceeecccccccchHHH
Q 009398 217 NMLK-KNKINAST---ELLPTHLYLYLCNDYDHHDKLFFCDQDQTI------LRNIPWLIMKSNLYFLPSLFLMSSFEEE 286 (535)
Q Consensus 217 ~~l~-n~~~~~~~---~~~p~~vyl~L~~~~~~~d~~FfCd~~q~~------L~~vpWL~~~Sd~YFvP~LFl~P~f~~e 286 (535)
+++. ++.++... ..+|+ +|.++. .+.++|++.|.+ ...+.|.....+.|+++++++.+.|+++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~p~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~w~~~~~ 139 (330)
T 2hhc_A 67 VPVICDDRVNQLSFPGPFFPR-WWNRPS------IDCINRPDEQIFRERDELTELFQAREDSEANTIVCDACLMWRCSEE 139 (330)
T ss_dssp EEEECSGGGGTCCCCSSEESG-GGGSCG------GGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEECSCCTTSSCHH
T ss_pred cceecccccccccCCCCcCch-hhhccc------cccccChHHhhhhhhhhhhhhhhhhhccCCCeEEcccccccchhhh
Confidence 3222 11111111 01122 222221 136788777553 2224455455568999999999988886
Q ss_pred HhhcCCCccchhhhhhccccCCchhHHHHHHHHHHhhhccccceeEEEEEeecCCCCc-----hH---HHHHHHHhHHhh
Q 009398 287 LDKLFPDKEMVFHHLGRYLFHPSNQVWKLITSYYKKYLADAEERVGIQIRIFHKNSSP-----FQ---QVMDQILSCTDK 358 (535)
Q Consensus 287 L~~lFP~kd~vFhhL~RYLfhPsn~VW~~Vtrfy~ayLA~a~~rIGIQIR~f~~~~~p-----~~---~~~~qIl~Ct~~ 358 (535)
. ++.+| ||| +|++.+|+.|++|+++++++ +..||||||.++..... +. ..++++.+|+.+
T Consensus 140 ~------~~~i~----~yl-~p~~~i~~~i~~~~~~~~~~-~~~VGVHIRrgD~~~~~~~~~~~~~~~~~l~~~~~~i~~ 207 (330)
T 2hhc_A 140 A------ERLIF----RNI-KLRSEIRARIDALYEEHFSG-HSIIGVHVRHGNGEDIMEHAPYWADSELALHQVCMAIRK 207 (330)
T ss_dssp H------HHHHH----HHS-CBCHHHHHHHHHHHHHHTTT-SEEEEEEECC------------CHHHHHHHHHHHHHHHH
T ss_pred h------HHHHH----hcC-CccHHHHHHHHHHHHHhccC-CceEEEEEecCCCCcccccCcchHHHhHHHHHHHHHHHH
Confidence 2 33344 998 99999999999999999885 78999999999854222 11 227899999998
Q ss_pred ccCCCCcccCCCcccCCCCCceeEEEEeecChhHHHHHHHHhhcCCccCCceEEEE-cCCcchhccccchhhhHHHHHHH
Q 009398 359 EKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVY-QASHEVTQHTMKNVHNQKAWAEI 437 (535)
Q Consensus 359 e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lk~~Y~~~~t~~Ge~V~V~-qPShee~Q~~~~~~h~~kALaEm 437 (535)
.+.+++. +.++|||+|+.+++.+++|++|++..+.+++.+... ++.|... .+..+.++|++||
T Consensus 208 ~~~~~~~-------------~~~~vfvaSDd~~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~---~~~~~~~~~~~Dm 271 (330)
T 2hhc_A 208 AKALSYP-------------KPVKVFLCTDSAQVLDQVSGLFPDVFAVPKRFQADRAGPLHSAE---MGIEGGASALIDM 271 (330)
T ss_dssp HHTSCCS-------------SCEEEEEEESCHHHHHHHHHHSTTEECCCC-----------CHH---HHHHHHHHHHHHH
T ss_pred HHhccCc-------------CceEEEEEeCCHHHHHHHHHHcCCcccccceeecccccccccCc---hhhccchHHHHHH
Confidence 8777641 458999999999999999999988655555432111 2222211 2345788999999
Q ss_pred HHHhcCCcee-ecCCCchhHHHHhhcCCc
Q 009398 438 NLLSMMDVLV-TSAGSTFGYVAQGLGGKR 465 (535)
Q Consensus 438 yLLS~sD~LV-tS~~STFGYVAqgLgGl~ 465 (535)
||||.||.+| |+++||||++|+-|+.-.
T Consensus 272 ~LLS~cd~~I~~~~~STFs~~aa~l~~~~ 300 (330)
T 2hhc_A 272 YLLARCATVIRFPPTSAFTRYARLLVPRI 300 (330)
T ss_dssp HHHTTCSEEEEESTTCGGGHHHHHHCSEE
T ss_pred HHHHcCCeeEECCCCCCHHHHHHHhCCcc
Confidence 9999999999 888999999999887543
No 2
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=99.63 E-value=1e-14 Score=158.16 Aligned_cols=204 Identities=17% Similarity=0.154 Sum_probs=123.5
Q ss_pred hhhhhhccccCCchhHHHHHHHHHHhhhccccceeEEEEEeecCC-----CCchHHHHHHH---HhHHhhccCCCCcccC
Q 009398 297 VFHHLGRYLFHPSNQVWKLITSYYKKYLADAEERVGIQIRIFHKN-----SSPFQQVMDQI---LSCTDKEKLLPQVDMG 368 (535)
Q Consensus 297 vFhhL~RYLfhPsn~VW~~Vtrfy~ayLA~a~~rIGIQIR~f~~~-----~~p~~~~~~qI---l~Ct~~e~lLP~v~~~ 368 (535)
.+.++.+|||+|++.+...|.++++.. ......||||||..|.- -.|.++.++.+ +....++
T Consensus 265 ~~~q~~~yl~rP~~~i~~~I~~~~~~l-~~~~piVGVHIRrGDk~~~E~~~~~~~~Y~~~v~~~~~~l~~~--------- 334 (526)
T 2de0_X 265 WVSQFVKYLIRPQPWLEKEIEEATKKL-GFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARR--------- 334 (526)
T ss_dssp HHHHHHHHHTCBCHHHHHHHHHHHHHH-TCCSSEEEEEECCC-----CCCSCSHHHHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh-CCCCCEEEEEEeCCCCCccccccCCHHHHHHHHHHHHHHHHhh---------
Confidence 478899999999999999999998874 12467799999998862 23445555433 2222221
Q ss_pred CCcccCCCCCceeEEEEeecChhHHHHHHHHhhcCCccCCceEEEEcCCcchhccccchhhhHHHHHHHHHHhcCCceee
Q 009398 369 KSIVAPFGKGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTQHTMKNVHNQKAWAEINLLSMMDVLVT 448 (535)
Q Consensus 369 ~~~~~~~~~~~~kaVlVtSL~~~y~e~lk~~Y~~~~t~~Ge~V~V~qPShee~Q~~~~~~h~~kALaEmyLLS~sD~LVt 448 (535)
.....+.|||+|+.++.++.++++|.+....+...+ .-+.....+.. ...-..+++||||||.||++|.
T Consensus 335 -------~~~~~~~ifLATDDp~v~~e~k~~~p~~~~~~d~~~---~~~a~~~~R~s-~~~l~~~l~DL~lLs~cd~~Vg 403 (526)
T 2de0_X 335 -------MQVDKKRVYLATDDPSLLKEAKTKYPNYEFISDNSI---SWSAGLHNRYT-ENSLRGVILDIHFLSQADFLVC 403 (526)
T ss_dssp -------SCCSSCEEEEEESCHHHHHHHHHHCTTSEEECCCCS---SCSSGGGGGTC-CTHHHHHHHHHHHHHHSSEEEE
T ss_pred -------cCCCCCeEEEEcCCHHHHHHHHHhCCCCEEecCccc---ccccCcccccc-HHHHHHHHHHHHHHhcCCeeec
Confidence 123457999999999999999998876522211111 11111111211 1123689999999999999999
Q ss_pred cCCCchhHHHHhhcCCcceEeeccCCCCCCCCCcccCCCCCCCCCCCCcccccccc----cCCcccccccccccCCccC-
Q 009398 449 SAGSTFGYVAQGLGGKRPWILYKTETQKIPDPVCGRAMSMEPCFHCPQVYDCKAKR----EVDTATIIPYLRHCDDLYW- 523 (535)
Q Consensus 449 S~~STFGYVAqgLgGl~PwiL~~~~~~~~~~ppC~r~~S~EPCfh~pp~ydC~~~~----~~d~~~~~p~vr~CeD~~~- 523 (535)
|..|||+.+|..+.|-..-.- .....+..+...+.+++.+.| . .-|+-.+.. .-..|.++--+..|+|-+|
T Consensus 404 t~sS~~srla~~l~~~~~~~~-~~~~~SLD~~~~~~Gq~~~~~--~-aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~ 479 (526)
T 2de0_X 404 TFSSQVCRVAYEIMQTLHPDA-SANFHSLDDIYYFGGQNAHNQ--I-AIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSK 479 (526)
T ss_dssp CTTSHHHHHHHHHHTTSSSCC-TTCEEESSCCSCCTTCCCCEE--E-ECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEE
T ss_pred CCCCHHHHHHHHHhcCcCccc-cccccCCccccccccccccce--E-EeecCCCCCCCcCCcCCCCEEEEccccCCCeeE
Confidence 999999999999887654110 000001122333333432222 1 124433332 1245555555677877766
Q ss_pred Ce
Q 009398 524 GT 525 (535)
Q Consensus 524 Gl 525 (535)
|-
T Consensus 480 G~ 481 (526)
T 2de0_X 480 GV 481 (526)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 3
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=97.91 E-value=3e-05 Score=80.48 Aligned_cols=145 Identities=14% Similarity=0.210 Sum_probs=91.0
Q ss_pred CCCccchhhhhhccccCCchhHHHHHHHHHHhhhccccceeEEEEEee-cCC-------CCchHHHHHHHHhHH--hhcc
Q 009398 291 FPDKEMVFHHLGRYLFHPSNQVWKLITSYYKKYLADAEERVGIQIRIF-HKN-------SSPFQQVMDQILSCT--DKEK 360 (535)
Q Consensus 291 FP~kd~vFhhL~RYLfhPsn~VW~~Vtrfy~ayLA~a~~rIGIQIR~f-~~~-------~~p~~~~~~qIl~Ct--~~e~ 360 (535)
||-+. --.+|.|| +..++.+-...++|-+++|.+ .=|||++|.. |++ .....+++.+ -+|. ..++
T Consensus 178 FPv~~-e~r~LqkY-m~WS~~i~~~a~~fI~~~L~r--pyVgIHLR~G~DW~~aC~hlk~~~~~~lfaS-PQC~Gy~~~~ 252 (362)
T 3zy2_A 178 FPSKG-KVWSIQKY-LRWSSRITEQAKKFISANLAK--PFVAVHLRNDADWVRVCEHIDTTTNRPLFAS-EQCLGEGHHL 252 (362)
T ss_dssp SSCCG-GGGGGGGG-CCBCHHHHHHHHHHHHHHCCS--SEEEEEECCCHHHHHHHHTCCTTTCCCCTTT-HHHHCGGGTT
T ss_pred CCcCh-hhHhHHHh-ccccHHHHHHHHHHHHHhcCC--CeEEEEEecCCcHHHHHhhhccccCcccccC-CcccCCcccC
Confidence 44443 35678888 899999999999999999995 7899999986 211 0000000000 1233 1111
Q ss_pred C-------CCCcccCCCcc-cCCCCCceeEEEEeecChhHHHHHHHHhhcCCccCCceEEE-EcCCcchhccccchhhhH
Q 009398 361 L-------LPQVDMGKSIV-APFGKGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAV-YQASHEVTQHTMKNVHNQ 431 (535)
Q Consensus 361 l-------LP~v~~~~~~~-~~~~~~~~kaVlVtSL~~~y~e~lk~~Y~~~~t~~Ge~V~V-~qPShee~Q~~~~~~h~~ 431 (535)
. +|.+....... ...+..+.++|+|+|+...+.++|++.+.... +..| ++|.
T Consensus 253 ~~lt~emClPSle~I~rqIk~~vk~~~lksVFIATDa~~~~~ELk~~L~~~~-----v~vv~~~pe-------------- 313 (362)
T 3zy2_A 253 GTLTKEICSPSKQQILEQIVEKVGSIGAKSVFVASDKDHMIDEINEALKPYE-----IEAHRQEPD-------------- 313 (362)
T ss_dssp CCCCHHHHSCCHHHHHHHHHHHHHHHTCSEEEEEESSCCCHHHHHHHHGGGT-----CCEECCSSC--------------
T ss_pred cccchhccCCCHHHHHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHHhhccC-----ceEEEeCCc--------------
Confidence 1 22221100000 00012246899999999999999999874321 1112 2222
Q ss_pred HHHHHHHHHhcCCceeecCCCchhHHHH
Q 009398 432 KAWAEINLLSMMDVLVTSAGSTFGYVAQ 459 (535)
Q Consensus 432 kALaEmyLLS~sD~LVtS~~STFGYVAq 459 (535)
.|.+|||+|+.+|++|.+..|||.+-.+
T Consensus 314 ~a~ID~~I~~~A~~FIGN~~SSFSa~I~ 341 (362)
T 3zy2_A 314 DMYTSLAIMGRADLFVGNCVSTFSHIVK 341 (362)
T ss_dssp CHHHHHHHHHHSSEEEECTTCHHHHHHH
T ss_pred hhHHHHHHHHhCCEeecCccccccHHHH
Confidence 6899999999999999999999998753
No 4
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=97.25 E-value=0.018 Score=59.94 Aligned_cols=99 Identities=13% Similarity=0.189 Sum_probs=64.9
Q ss_pred eEEEEEeecCCC-----C-chHHHHHHHHhHHhhccCCCCcccCCCcccCCCCCceeEEEEeecChhH-HHHHHHHhhcC
Q 009398 331 VGIQIRIFHKNS-----S-PFQQVMDQILSCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSY-YEKMKNMYLKH 403 (535)
Q Consensus 331 IGIQIR~f~~~~-----~-p~~~~~~qIl~Ct~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y-~e~lk~~Y~~~ 403 (535)
+++|+|..+... . +.+.+.++|..-..+. +.+.|+|||+.... .+.|++....
T Consensus 268 ~~~H~Rr~d~~~~~~~~~ps~~~~~~~i~~~~~~~-------------------~~~~VyiATD~~~~~~~~l~~~~~~- 327 (408)
T 4ap5_A 268 LGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTH-------------------RLDKVFVATDAVRKEYEELKKLLPE- 327 (408)
T ss_dssp EEEEECCTTTTTTTCSSSCCHHHHHHHHHHHHHHH-------------------TCSCEEEEECCCHHHHHHHHHHCTT-
T ss_pred cccccccccchhhhhccCCCHHHHHHHHHHHHHhc-------------------CCCEEEEeCCCchhHHHHHHHhCCC-
Confidence 889999866431 1 3344555554444332 24689999996543 5778776532
Q ss_pred CccCCceEEEEcCCcchhccccchhhhHHHHHHHHHHhcCCceeecCCCchhHHHH
Q 009398 404 PTLNGEVVAVYQASHEVTQHTMKNVHNQKAWAEINLLSMMDVLVTSAGSTFGYVAQ 459 (535)
Q Consensus 404 ~t~~Ge~V~V~qPShee~Q~~~~~~h~~kALaEmyLLS~sD~LVtS~~STFGYVAq 459 (535)
+..+.|..++....++ +.-|++|+++++.+|+.|.|..|||..--+
T Consensus 328 -------~~~~~~~~~~~~~~~d---~~~a~idq~Ic~~a~~FiGt~~StfS~~I~ 373 (408)
T 4ap5_A 328 -------MVRFEPTWEELELYKD---GGVAIIDQWICAHARFFIGTSVSTFSFRIH 373 (408)
T ss_dssp -------EECCCCCHHHHHHHHH---HHHHHHHHHHHHTEEEEEBCTTCHHHHHHH
T ss_pred -------cEEecCcchhhhccCc---chhhHHHHHHHHhCCeeEeCCcCchhHHHH
Confidence 3345565554443322 345999999999999999999999987643
No 5
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.81 E-value=1.2e+02 Score=23.96 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=42.9
Q ss_pred CceeEEEEeecChhHH-HHHHHHhhcCCccCCceEEEEcCCcchhccccchhhhHHHHHHH
Q 009398 378 GKSKAVLITSLIPSYY-EKMKNMYLKHPTLNGEVVAVYQASHEVTQHTMKNVHNQKAWAEI 437 (535)
Q Consensus 378 ~~~kaVlVtSL~~~y~-e~lk~~Y~~~~t~~Ge~V~V~qPShee~Q~~~~~~h~~kALaEm 437 (535)
...+.|+|..|....- +.|++.|.+... |++..|..+.+-..=.+.+....++|+..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~--g~v~~~~~~~g~afV~f~~~~~A~~A~~~l 71 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVKKIRDYAFVHFSNREDAVEAMKAL 71 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEEECSSEEEEEESSHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCC--cceEEEEEeCCeEEEEeCCHHHHHHHHHHh
Confidence 3457899999987654 569988877643 778888777666666667777788888766
No 6
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=18.17 E-value=4.5e+02 Score=25.03 Aligned_cols=113 Identities=12% Similarity=-0.047 Sum_probs=67.4
Q ss_pred HHHHHHHHhHHhhccCCCCcccCCCcccCCCCCceeEEEEeecChhHHHHHHHHhhcCCccCCceEEEEcCCcchhcccc
Q 009398 346 QQVMDQILSCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTQHTM 425 (535)
Q Consensus 346 ~~~~~qIl~Ct~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lk~~Y~~~~t~~Ge~V~V~qPShee~Q~~~ 425 (535)
++.-++|++.+.+-+--|+....+ ...+..+.++|++.++...|+..+.+-..+.....|=.+.+......
T Consensus 39 ~~tr~rV~~~~~~lgY~pn~~a~~---l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~------ 109 (344)
T 3kjx_A 39 DATRARVLAAAKELGYVPNKIAGA---LASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDYL------ 109 (344)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCSC---STTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTTC------
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHH---hhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCCC------
Confidence 555678888898888888643221 12344568999998887777776665554444444555555432221
Q ss_pred chhhhHHHHHHHHHHhcCCceeecCCCch-hHHHHhh-cCCcceEee
Q 009398 426 KNVHNQKAWAEINLLSMMDVLVTSAGSTF-GYVAQGL-GGKRPWILY 470 (535)
Q Consensus 426 ~~~h~~kALaEmyLLS~sD~LVtS~~STF-GYVAqgL-gGl~PwiL~ 470 (535)
...+....+..+-.-.|-+|..+...- -.+..-. .| .|.|+.
T Consensus 110 --~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~-iPvV~i 153 (344)
T 3kjx_A 110 --PEKEEKVLYEMLSWRPSGVIIAGLEHSEAARAMLDAAG-IPVVEI 153 (344)
T ss_dssp --HHHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHHCS-SCEEEE
T ss_pred --HHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHhCC-CCEEEE
Confidence 123455667766678999998764422 2232222 34 488776
No 7
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=16.19 E-value=1.3e+02 Score=31.27 Aligned_cols=39 Identities=21% Similarity=0.436 Sum_probs=34.4
Q ss_pred CCceEEEEeccCC-chhhHHHHHHHHHHHHHhCceeeecC
Q 009398 137 SECRYVVWIARAG-LGNRILSIASAFLYALLTNRVLLIDE 175 (535)
Q Consensus 137 ~~CkYlVw~~~~G-LGNRmLslaSaFLYALLT~RVLLVd~ 175 (535)
++=-||++-|+-| .||++==...++-.|=.-||+|+|-+
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPp 45 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPN 45 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCC
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCc
Confidence 3457999998866 99999999999999999999999964
No 8
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=15.74 E-value=2.1e+02 Score=22.07 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=38.6
Q ss_pred CceeEEEEeecChhHH-HHHHHHhhcCCccCCceEEEEcCCcchhccccchhhhHHHHHHH
Q 009398 378 GKSKAVLITSLIPSYY-EKMKNMYLKHPTLNGEVVAVYQASHEVTQHTMKNVHNQKAWAEI 437 (535)
Q Consensus 378 ~~~kaVlVtSL~~~y~-e~lk~~Y~~~~t~~Ge~V~V~qPShee~Q~~~~~~h~~kALaEm 437 (535)
...+.|+|.-|....- +.|++.|.+. |++..|.-+..-..=.+.+....++|+..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~~~~g~afV~f~~~~~A~~A~~~l 62 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQY----GKVLECDIIKNYGFVHIEDKTAAEDAIRNL 62 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTS----SCEEEEEEETTEEEEEESSHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEECCEEEEEECCHHHHHHHHHHh
Confidence 3457899999877655 5588888765 456666555555555667777778887765
No 9
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.05 E-value=3.7e+02 Score=20.91 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=37.2
Q ss_pred CCceeEEEEeecChhHH-HHHHHHhhcCCccCCceEEEEcCCcchhccccchhhhHHHHHHH
Q 009398 377 KGKSKAVLITSLIPSYY-EKMKNMYLKHPTLNGEVVAVYQASHEVTQHTMKNVHNQKAWAEI 437 (535)
Q Consensus 377 ~~~~kaVlVtSL~~~y~-e~lk~~Y~~~~t~~Ge~V~V~qPShee~Q~~~~~~h~~kALaEm 437 (535)
......|+|..|..+.- +.|++.|.+...+. ..+..-.+.+-..=.+.+....++|+.+|
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l 76 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCL 76 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHh
Confidence 34467999999976655 55888888776653 11111122333344556676778888766
No 10
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=14.56 E-value=2.2e+02 Score=22.01 Aligned_cols=57 Identities=9% Similarity=0.105 Sum_probs=37.8
Q ss_pred CCceeEEEEeecChhHH-HHHHHHhhcCCccCCceEEEEcCCcchhccccchhhhHHHHHHH
Q 009398 377 KGKSKAVLITSLIPSYY-EKMKNMYLKHPTLNGEVVAVYQASHEVTQHTMKNVHNQKAWAEI 437 (535)
Q Consensus 377 ~~~~kaVlVtSL~~~y~-e~lk~~Y~~~~t~~Ge~V~V~qPShee~Q~~~~~~h~~kALaEm 437 (535)
....+.|+|.-|....- +.|++.|.+.. ++..|.-+..-..=.+.+....++|+..|
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G----~v~~v~~~~~~afV~f~~~~~a~~A~~~l 64 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYG----PVIECDIVKDYAFVHMERAEDAVEAIRGL 64 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTS----CCCEEEECSSEEEEEESCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEECCEEEEEECCHHHHHHHHHHh
Confidence 44568999999876554 55888887654 44555544444444556666777887766
Done!