Query 009398
Match_columns 535
No_of_seqs 140 out of 162
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 04:18:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009398.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009398hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cpda1 d.58.7.1 (A:223-308) A 30.7 33 0.0024 25.2 4.9 58 379-438 7-65 (86)
2 d2bz2a1 d.58.7.1 (A:35-113) Ne 25.2 68 0.005 23.1 5.9 63 378-443 3-65 (79)
3 d1tjya_ c.93.1.1 (A:) AI-2 rec 20.9 52 0.0038 28.2 5.1 71 377-454 2-72 (316)
4 d1ihua1 c.37.1.10 (A:1-296) Ar 17.9 66 0.0048 27.9 5.1 48 139-186 8-57 (296)
5 d1zcha1 d.90.1.1 (A:1-249) Hyp 17.8 64 0.0047 28.5 5.1 52 335-401 14-65 (249)
6 d1wwha1 d.58.7.1 (A:169-249) N 16.5 1.1E+02 0.0081 22.5 5.5 51 380-434 4-56 (81)
7 d1f5va_ d.90.1.1 (A:) Oxygen-i 16.4 78 0.0057 27.8 5.3 52 335-401 14-65 (240)
8 d1prtb2 d.169.1.2 (B:4-89) Per 14.6 9.1 0.00067 29.5 -1.6 19 446-464 44-67 (86)
9 d2nzug1 c.93.1.1 (G:58-332) Gl 13.9 1.5E+02 0.011 24.8 6.4 86 377-470 2-88 (275)
10 d1whxa_ d.58.7.1 (A:) Probable 13.3 1.1E+02 0.0082 22.8 4.8 54 380-437 10-66 (111)
No 1
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.70 E-value=33 Score=25.23 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=45.0
Q ss_pred ceeEEEEeecChhHH-HHHHHHhhcCCccCCceEEEEcCCcchhccccchhhhHHHHHHHH
Q 009398 379 KSKAVLITSLIPSYY-EKMKNMYLKHPTLNGEVVAVYQASHEVTQHTMKNVHNQKAWAEIN 438 (535)
Q Consensus 379 ~~kaVlVtSL~~~y~-e~lk~~Y~~~~t~~Ge~V~V~qPShee~Q~~~~~~h~~kALaEmy 438 (535)
+.+.|+|..|..+.- +.|++.+.+... ++.+.+..+.+-.+=.+.+..+.++|+..|-
T Consensus 7 ~~k~l~V~nLp~~~te~~l~~~F~~~g~--i~~~~~~~~rg~afV~f~~~~~A~~Ai~~l~ 65 (86)
T d2cpda1 7 SVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVKKIRDYAFVHFSNREDAVEAMKALN 65 (86)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEEECSSEEEEEESSHHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHhhcccce--eeeEEEccccEEEEEEeCCHHHHHHHHHHcC
Confidence 347899999988665 559999877643 4677888888877778888888888987763
No 2
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.15 E-value=68 Score=23.06 Aligned_cols=63 Identities=10% Similarity=-0.022 Sum_probs=40.9
Q ss_pred CceeEEEEeecChhHHHHHHHHhhcCCccCCceEEEEcCCcchhccccchhhhHHHHHHHHHHhcC
Q 009398 378 GKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTQHTMKNVHNQKAWAEINLLSMM 443 (535)
Q Consensus 378 ~~~kaVlVtSL~~~y~e~lk~~Y~~~~t~~Ge~V~V~qPShee~Q~~~~~~h~~kALaEmyLLS~s 443 (535)
.+.+.|+|..+. --.+.|++.|.+...+ ..|.+..+.+-..=.+.+....++|+.+|-=..+.
T Consensus 3 ~~~~ti~V~~~~-~te~~L~~~F~~~G~I--~~v~~~~~~~~afV~f~~~~~A~~Ai~~lng~~~~ 65 (79)
T d2bz2a1 3 RKGNTLYVYGED-MTPTLLRGAFSPFGNI--IDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVE 65 (79)
T ss_dssp CCCCEEEEECSS-CCHHHHHHHHSTTCCC--SCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEEECCC-CCHHHHHHHHhccCcc--ceeeeccCCCEEEEEEcccHHHHHHHHHhCCCEEC
Confidence 345689999985 5578899999877543 22333444444455667777788888887433333
No 3
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=20.93 E-value=52 Score=28.24 Aligned_cols=71 Identities=14% Similarity=-0.009 Sum_probs=49.2
Q ss_pred CCceeEEEEeecChhHHHHHHHHhhcCCccCCceEEEEcCCcchhccccchhhhHHHHHHHHHHhcCCceeecCCCch
Q 009398 377 KGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTQHTMKNVHNQKAWAEINLLSMMDVLVTSAGSTF 454 (535)
Q Consensus 377 ~~~~kaVlVtSL~~~y~e~lk~~Y~~~~t~~Ge~V~V~qPShee~Q~~~~~~h~~kALaEmyLLS~sD~LVtS~~STF 454 (535)
+.+.+++++.++.-.|+..+.+-.-+....-|=.+.+..|+... ...|.+..|..+-.-.|.+|+++.++=
T Consensus 2 ~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~v~~~~~~~~d-------~~~q~~~i~~~i~~~~dgIIi~~~~~~ 72 (316)
T d1tjya_ 2 SAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPS-------VSGQVQLVNNFVNQGYDAIIVSAVSPD 72 (316)
T ss_dssp CCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCC-------HHHHHHHHHHHHHTTCSEEEECCSSSS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-------HHHHHHHHHHHHhcCCCeeeecccccc
Confidence 45678999999988898887766655444445344455555432 223677888888889999999886553
No 4
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=17.86 E-value=66 Score=27.86 Aligned_cols=48 Identities=25% Similarity=0.487 Sum_probs=39.6
Q ss_pred ceEEEEeccCCchhhHHHHHHHHHHHHHhCceeeecCC--CcccccccCC
Q 009398 139 CRYVVWIARAGLGNRILSIASAFLYALLTNRVLLIDEE--PEMANLFCEP 186 (535)
Q Consensus 139 CkYlVw~~~~GLGNRmLslaSaFLYALLT~RVLLVd~~--~d~~~LFCEP 186 (535)
-||+++..=+|-|==-+|..-|..+|-.=.||||||-. ..++++|--+
T Consensus 8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~~~l~~~lg~~ 57 (296)
T d1ihua1 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQT 57 (296)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHTTSC
T ss_pred CeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCCCCHHHHhCCC
Confidence 58999888899999999999999999999999999844 4566666444
No 5
>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD {Bacillus subtilis [TaxId: 1423]}
Probab=17.80 E-value=64 Score=28.52 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=35.0
Q ss_pred EEeecCCCCchHHHHHHHHhHHhhccCCCCcccCCCcccCCCCCceeEEEEeecChhHHHHHHHHhh
Q 009398 335 IRIFHKNSSPFQQVMDQILSCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSYYEKMKNMYL 401 (535)
Q Consensus 335 IR~f~~~~~p~~~~~~qIl~Ct~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lk~~Y~ 401 (535)
||-|.+++++ ++.+++|+.|++. ++++.|.+.-.|+|..+ ++--++|.....
T Consensus 14 iR~F~~~pV~-~e~i~~il~aA~~-------------APS~~N~Qpw~~ivV~d-~e~~~~l~~~~~ 65 (249)
T d1zcha1 14 IRSYTDEPVA-QEQLDQIIEAVQS-------------APSSINGQQVTVITVQD-KERKKKISELAG 65 (249)
T ss_dssp CCCBCSCCCC-HHHHHHHHHHHHH-------------SCCGGGCCCEEEEEECC-HHHHHHHHHHTT
T ss_pred cccCCCCCCC-HHHHHHHHHHHHh-------------CcCcccCCCeEEEEEec-chHHHHHHHHhc
Confidence 6889888777 7788999999975 22334445555555543 566777776554
No 6
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.46 E-value=1.1e+02 Score=22.48 Aligned_cols=51 Identities=8% Similarity=0.069 Sum_probs=38.6
Q ss_pred eeEEEEeecChhHHHHHHHHhhcCCccCCceEEEEcCCcc--hhccccchhhhHHHH
Q 009398 380 SKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHE--VTQHTMKNVHNQKAW 434 (535)
Q Consensus 380 ~kaVlVtSL~~~y~e~lk~~Y~~~~t~~Ge~V~V~qPShe--e~Q~~~~~~h~~kAL 434 (535)
...|+|..+.++-.+.+.+.|.+. |+++.+..+... .+=.+.+....++||
T Consensus 4 ~~wV~V~G~p~~~~~~il~~F~~~----G~I~~~~~~~~~~~~fV~f~~~~~A~~Al 56 (81)
T d1wwha1 4 DTWVTVFGFPQASASYILLQFAQY----GNILKHVMSNTGNWMHIRYQSKLQARKAL 56 (81)
T ss_dssp GGEEEEECCCGGGHHHHHHHHHTT----SCEEEEEECSSSSEEEEEESSHHHHHHHH
T ss_pred ccEEEEECCChHHHHHHHHHHHhh----hhhheEEecCCCCEEEEEEcccHHHHHHH
Confidence 357999999998888888878665 678888766543 355667788888887
No 7
>d1f5va_ d.90.1.1 (A:) Oxygen-insensitive NAD(P)H nitroreductase {Escherichia coli, major form, NfsA [TaxId: 562]}
Probab=16.35 E-value=78 Score=27.83 Aligned_cols=52 Identities=10% Similarity=0.119 Sum_probs=34.5
Q ss_pred EEeecCCCCchHHHHHHHHhHHhhccCCCCcccCCCcccCCCCCceeEEEEeecChhHHHHHHHHhh
Q 009398 335 IRIFHKNSSPFQQVMDQILSCTDKEKLLPQVDMGKSIVAPFGKGKSKAVLITSLIPSYYEKMKNMYL 401 (535)
Q Consensus 335 IR~f~~~~~p~~~~~~qIl~Ct~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lk~~Y~ 401 (535)
||.|.+++++ ++.+++|+.|++. ++++.|.+.-.++|.++ ++.-++|.....
T Consensus 14 vR~F~~~~V~-~e~l~~il~aA~~-------------APS~~N~Qpw~~ivV~d-~e~~~~la~~~~ 65 (240)
T d1f5va_ 14 IRHFTDEPIS-EAQREAIINSARA-------------TSSSSFLQCSSIIRITD-KALREELVTLTG 65 (240)
T ss_dssp CCCBCSCCCC-HHHHHHHHHHHHT-------------SCCGGGCCCEEEEECCC-HHHHHHHHHHTT
T ss_pred CccCCCCCCC-HHHHHHHHHHHHH-------------CcCcccCCCceEEEEeC-CccchhhHhhhh
Confidence 6889888777 6778999999975 22334455555555554 566677776544
No 8
>d1prtb2 d.169.1.2 (B:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=14.58 E-value=9.1 Score=29.51 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=16.8
Q ss_pred eeecCCCchh-----HHHHhhcCC
Q 009398 446 LVTSAGSTFG-----YVAQGLGGK 464 (535)
Q Consensus 446 LVtS~~STFG-----YVAqgLgGl 464 (535)
-||-+||-|| |++|.+||+
T Consensus 44 ~it~gwsi~~lydgtylg~~yggi 67 (86)
T d1prtb2 44 HVTRGWSIFALYDGTYLGGEYGGV 67 (86)
T ss_dssp TTCCSSCEEECSSEEEECGGGCSE
T ss_pred hcCCCceEEEEeccceeccccCce
Confidence 4799999998 789999997
No 9
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=13.86 E-value=1.5e+02 Score=24.81 Aligned_cols=86 Identities=14% Similarity=0.125 Sum_probs=52.9
Q ss_pred CCceeEEEEeecChhHHHHHHHHhhcCCccCCceEEEEcCCcchhccccchhhhHHHHHHHHHHhcCCceeecCCCchhH
Q 009398 377 KGKSKAVLITSLIPSYYEKMKNMYLKHPTLNGEVVAVYQASHEVTQHTMKNVHNQKAWAEINLLSMMDVLVTSAGSTFGY 456 (535)
Q Consensus 377 ~~~~kaVlVtSL~~~y~e~lk~~Y~~~~t~~Ge~V~V~qPShee~Q~~~~~~h~~kALaEmyLLS~sD~LVtS~~STFGY 456 (535)
+.+.++|+|.++...|+..+-+-.-+.....|=.+.++. +.+ ....+++..|..+-.-.|.+|..+...-..
T Consensus 2 kt~tIgvvvp~l~~~f~~~~~~gi~~~~~~~g~~~~~~~-~~~-------~~~~e~~~i~~~~~~~vdgii~~~~~~~~~ 73 (275)
T d2nzug1 2 KTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSN-SDQ-------NQDKELHLLNNMLGKQVDGIIFMSGNVTEE 73 (275)
T ss_dssp CCSEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE-CTT-------CHHHHHHHHHHHHTTCCSEEEECCSCCCHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHHHHcCCEEEEEE-CCC-------CHHHHHHHHHHHHhcCCceeeccccchhhH
Confidence 457899999998877777665555444444444444432 221 223457788888888999999888655444
Q ss_pred HHHh-hcCCcceEee
Q 009398 457 VAQG-LGGKRPWILY 470 (535)
Q Consensus 457 VAqg-LgGl~PwiL~ 470 (535)
...- ...-.|.++.
T Consensus 74 ~~~~l~~~~~pvv~~ 88 (275)
T d2nzug1 74 HVEELKKSPVPVVLA 88 (275)
T ss_dssp HHHHHHHCSSCEEEE
T ss_pred HHHHHhhcccccccc
Confidence 4332 3334466553
No 10
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.32 E-value=1.1e+02 Score=22.82 Aligned_cols=54 Identities=11% Similarity=0.256 Sum_probs=37.8
Q ss_pred eeEEEEeecChhHH-HHHHHHhhcCCccCCceEEEEcCCcch--hccccchhhhHHHHHHH
Q 009398 380 SKAVLITSLIPSYY-EKMKNMYLKHPTLNGEVVAVYQASHEV--TQHTMKNVHNQKAWAEI 437 (535)
Q Consensus 380 ~kaVlVtSL~~~y~-e~lk~~Y~~~~t~~Ge~V~V~qPShee--~Q~~~~~~h~~kALaEm 437 (535)
...|+|.-|..... +.|+++|... |+++.|.-+.+.+ +=.|.+....++|+-+|
T Consensus 10 ~~~l~V~nLp~~~t~~~L~~~F~~f----G~I~~v~l~~~kg~afV~f~~~~~A~~A~~~l 66 (111)
T d1whxa_ 10 KTVILAKNLPAGTLAAEIQETFSRF----GSLGRVLLPEGGITAIVEFLEPLEARKAFRHL 66 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCSSSSCEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHhhhhcc----CCccEEEeeccCceEEEEEcCHHHHHHHHHHH
Confidence 46788888876554 5699999765 6778887665543 34556666777888776
Done!