BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009399
(535 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 468 bits (1203), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/514 (45%), Positives = 346/514 (67%), Gaps = 16/514 (3%)
Query: 30 DSFIHCLNSN--SDLSVPFSTFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYE 87
++F+ C + + ++++ P + Q + + SIL S+ QNLR+++ + PKP I TP
Sbjct: 5 ENFLKCFSKHIPNNVANPKLVYT-QHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNN 63
Query: 88 SHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAW 147
SH+QA ++CSK++G+ +R RSGGHD EG+SY+S++ PF++VDL + +I +D+ S +AW
Sbjct: 64 SHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQV--PFVVVDLRNMHSIKIDVHSQTAW 121
Query: 148 VQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDAR 207
V+ GAT+GEVYY I EK++ FP G C ++GVGGH +GG YG++MR YGL ADN++DA
Sbjct: 122 VEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAH 181
Query: 208 IVDANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLXXXXXXXXXXXXXXXLE-QG 266
+V+ +GK+LDR++MGEDLFWAIRGGGG +FGII +WKIKL +E G
Sbjct: 182 LVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHG 241
Query: 267 ATKILYRWQQVADKLDEDLFIRVIIQAAEIPERKGQR--TISTSYNALFLGGVDRLLQVM 324
K+ +WQ +A K D+DL + I + G+ T+ ++++F GGVD L+ +M
Sbjct: 242 LVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLM 301
Query: 325 QESFPELGLTQKDCIETSWIKSVLYIAGY----PSNTPPEVLLQGKSTFKNYFKAKSDFV 380
+SFPELG+ + DC E SWI + ++ +G +N E+LL + K F K D+V
Sbjct: 302 NKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYV 361
Query: 381 REPIPETALEGLWKRFLEEE--GPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTN 438
++PIPETA+ + ++ EE+ + + PYGG+M +I+ESAIPFPHR G ++++ Y +
Sbjct: 362 KKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTAS 421
Query: 439 WQDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLG-MNNKSNTSFIQATAWG 497
W+ + N KH+ W+R +YN+ PYVS PR AY+NYRDLDLG N+ S ++ QA WG
Sbjct: 422 WEKQEDN-EKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWG 480
Query: 498 SRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPLP 531
+YF NF RLV+VKTKVDP+NFFR+EQSIPPLP
Sbjct: 481 EKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 437 bits (1124), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/508 (44%), Positives = 328/508 (64%), Gaps = 19/508 (3%)
Query: 25 SDSVEDSFIHCLNSNSDLSVPFSTFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTP 84
+ VE F+ CL + +P +++ ++ S+ S+ +N+++L+ KP +I TP
Sbjct: 6 AKQVERDFLTCLTKD----IPPRQLYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITP 61
Query: 85 LYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESN 144
SH+QAAV+C ++ G+ +RVRSGGHDYEGLSY SE PF +VD+ ++RA+S+D ++
Sbjct: 62 TNASHIQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAA 121
Query: 145 SAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVL 204
+AWV +GA +G++YY IA+ S GFPAG+CT++GVGGH +GG +G ++RKYG ADNV+
Sbjct: 122 TAWVDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVI 181
Query: 205 DARIVDANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLXXXXXXXXXXXXXXXLE 264
DA++VDA G++LDR+AMGED FWAIRGGGG SFGI+ SW++KL ++
Sbjct: 182 DAKVVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIK 241
Query: 265 QGATKILYRWQQVADKLDEDLFIRVIIQAAEIPERKGQRTISTSYNALFLGGVDRLLQVM 324
+GA ++ +WQ VA L +DL IR++ GQ + + AL+LG L+ +M
Sbjct: 242 EGAIDLVTKWQTVAPALPDDLMIRIMAM--------GQGAM---FEALYLGTCKDLVLLM 290
Query: 325 QESFPELGLTQKDCIETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNYFKAKSDFVREPI 384
FPELG+ C E +WI+SV YI P T + LL S K + K KSD+V EPI
Sbjct: 291 TARFPELGMNATHCKEMTWIESVPYIPMGPKGTVRD-LLNRTSNIKAFGKYKSDYVLEPI 349
Query: 385 PETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTNWQDGDK 444
P++ E ++ ++ + I +PYGG ++ + ESA PFP R+G LF IQYV W G+
Sbjct: 350 PKSDWEKIFTWLVKPGAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWF-GEG 408
Query: 445 NMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLGMNN--KSNTSFIQATAWGSRYFK 502
A +W R +Y++M PYVS PR AYVNYRDLDLG+N + +++ WG +YFK
Sbjct: 409 AAALPTQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFK 468
Query: 503 DNFMRLVRVKTKVDPDNFFRHEQSIPPL 530
NF RL R K K+DP+++FR+EQSIPPL
Sbjct: 469 GNFERLARTKGKIDPEDYFRNEQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 404 bits (1039), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/507 (41%), Positives = 312/507 (61%), Gaps = 19/507 (3%)
Query: 27 SVEDSFIHCLNSNSDLSVPFSTFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLY 86
+ ++ F+ CL +P +++ ++ S+L + +N R+ +P KP +I TP
Sbjct: 6 AAKEDFLGCLVKE----IPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQ 61
Query: 87 ESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSA 146
SH+Q+AV+C ++ + +RVRSGGHDYEGLSY S F +VDL ++RA+ VD ++ +A
Sbjct: 62 VSHIQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTA 121
Query: 147 WVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDA 206
WV +GA +GE+YY I + S FPAG+C ++GVGG+ GG +G ++RKYG+ A+NV+D
Sbjct: 122 WVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDV 181
Query: 207 RIVDANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLXXXXXXXXXXXXXXXLEQG 266
++VDANGK+ D+++MG+D FWA+RGGGG SFGI+++W++KL + +G
Sbjct: 182 KLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEG 241
Query: 267 ATKILYRWQQVADKLDEDLFIRVIIQAAEIPERKGQRTISTSYNALFLGGVDRLLQVMQE 326
A I+ +WQ VA +L DL IR+I Q + ++ A++LG L +M
Sbjct: 242 AVDIINKWQVVAPQLPADLMIRIIAQGPK-----------ATFEAMYLGTCKTLTPLMSS 290
Query: 327 SFPELGLTQKDCIETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNYFKAKSDFVREPIPE 386
FPELG+ C E SWI+S+ ++ + + LL +++FK + + KSD+V +P P+
Sbjct: 291 KFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPK 350
Query: 387 TALEGLWKRFLEEEGP-LSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTNWQDGDKN 445
T E + +L + G + I++PYG +S ESA PFPHR G LF IQYV W
Sbjct: 351 TVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWF-APGA 409
Query: 446 MAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLGMNNKSN--TSFIQATAWGSRYFKD 503
A + W + +YNYM PYVS PR AY NYRD+DLG N N +++ WG +YFK
Sbjct: 410 AAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKG 469
Query: 504 NFMRLVRVKTKVDPDNFFRHEQSIPPL 530
NF RL K KVDP ++FR+EQSIPPL
Sbjct: 470 NFERLAITKGKVDPTDYFRNEQSIPPL 496
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 343 bits (879), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 208/526 (39%), Positives = 298/526 (56%), Gaps = 48/526 (9%)
Query: 31 SFIHCLNSNSDL--SVPF------STFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIF 82
S ++C + +DL + F + F ++S F L S QN + + KP I
Sbjct: 16 SLLNCAEAGNDLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAII 75
Query: 83 TPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIE 142
P + + + C ++ +R+RSGGH YEGLSY S+ TPFI++DL L +S+D+E
Sbjct: 76 LPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSD--TPFILIDLMNLNRVSIDLE 133
Query: 143 SNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADN 202
S +AWV++G+T+GE+YY I E S GF AG C ++G GGHI+GG +G M RKYGL ADN
Sbjct: 134 SETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADN 193
Query: 203 VLDARIVDANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLXXXXXXXXXXXXXXX 262
V+DA ++DANG ILDR+AMGED+FWAIRGGGG +G I +WKIKL
Sbjct: 194 VVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKN 253
Query: 263 LE-QGATKILYRWQQVADKLDEDLFIRVIIQAAE-------IPERKGQRTISTSYNALFL 314
+ AT +L++WQ VA++L+ED + V+ A E + G +T++ S L
Sbjct: 254 VAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLL- 312
Query: 315 GGVDRLLQVMQESFPELGLTQKDCIETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNY-- 372
FPELGL ++D +E SW +S Y+AG E + Q + F +
Sbjct: 313 -------------FPELGLVEEDYLEMSWGESFAYLAGL------ETVSQLNNRFLKFDE 353
Query: 373 --FKAKSDFVREPIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTL 430
FK K D +EP+P A GL +R +E N +GG MSKI+ PFPHR+GT
Sbjct: 354 RAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTR 413
Query: 431 FKIQYVTNW-QDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLGMNNKSNTS 489
++Y+ W Q K + ++W+ ++Y +M P+VS PR YVN+ DLDLG + N +
Sbjct: 414 LMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKT 473
Query: 490 FIQ-----ATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPL 530
+ + +WG YF N+ RL+R KT +DP+N F H QSIPP+
Sbjct: 474 VVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 519
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 342 bits (876), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 205/519 (39%), Positives = 293/519 (56%), Gaps = 42/519 (8%)
Query: 30 DSFIHCLNSNSDLSVPFSTFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYESH 89
+ + CL N + + F ++S F L S QN + + KP I P +
Sbjct: 6 NDLLSCLTFNGVRN--HTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 63
Query: 90 VQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQ 149
+ + C ++ +R+RSGGH YEGLSY S+ TPFI++DL L +S+D+ES +AWV+
Sbjct: 64 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVE 121
Query: 150 TGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIV 209
+G+T+GE+YY I E S GF AG C ++G GG I+GG +G M RKYGL ADNV+DA ++
Sbjct: 122 SGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVDAILI 181
Query: 210 DANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLXXXXXXXXXXXXXXXLE-QGAT 268
DANG ILDR+AMGED+FWAIRGGGG +G I +WKIKL + AT
Sbjct: 182 DANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEAT 241
Query: 269 KILYRWQQVADKLDEDLFIRVIIQAAE-------IPERKGQRTISTSYNALFLGGVDRLL 321
+L++WQ VA++L+ED + V+ A E + G +T++ S L
Sbjct: 242 SLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLL-------- 293
Query: 322 QVMQESFPELGLTQKDCIETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNY----FKAKS 377
FPELGL ++D +E SW +S Y+AG E + Q + F + FK K
Sbjct: 294 ------FPELGLVEEDYLEMSWGESFAYLAGL------ETVSQLNNRFLKFDERAFKTKV 341
Query: 378 DFVREPIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVT 437
D +EP+P A GL +R +E N +GG MSKI+ PFPHR+GT ++Y+
Sbjct: 342 DLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIV 401
Query: 438 NW-QDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLGMNNKSNTSFIQ---- 492
W Q K + ++W+ ++Y +M P+VS PR YVN+ DLDLG + N + +
Sbjct: 402 AWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIE 461
Query: 493 -ATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPL 530
+ +WG YF N+ RL+R KT +DP+N F H QSIPP+
Sbjct: 462 ISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 500
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 342 bits (876), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 206/519 (39%), Positives = 294/519 (56%), Gaps = 42/519 (8%)
Query: 30 DSFIHCLNSNSDLSVPFSTFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYESH 89
+ + CL N + + F ++S F L S QN + + KP I P +
Sbjct: 6 NDLLSCLTFNGVRN--HTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 63
Query: 90 VQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQ 149
+ + C ++ +R+RSGGH YEGLSY S+ TPFI++DL L +S+D+ES +AWV+
Sbjct: 64 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVE 121
Query: 150 TGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIV 209
+G+T+GE+YY I E S GF AG C ++G GGHI+GG +G M RKYGL ADNV+DA ++
Sbjct: 122 SGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILI 181
Query: 210 DANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLXXXXXXXXXXXXXXXLE-QGAT 268
DANG ILDR+AMGED+FWAIRGGGG +G I +WKIKL + AT
Sbjct: 182 DANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEAT 241
Query: 269 KILYRWQQVADKLDEDLFIRVIIQAAE-------IPERKGQRTISTSYNALFLGGVDRLL 321
+L++WQ VA++L+ED + V+ A E + G +T++ S L
Sbjct: 242 SLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLL-------- 293
Query: 322 QVMQESFPELGLTQKDCIETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNY----FKAKS 377
FPELGL ++D +E SW +S Y+AG E + Q + F + FK K
Sbjct: 294 ------FPELGLVEEDYLEMSWGESFAYLAGL------ETVSQLNNRFLKFDERAFKTKV 341
Query: 378 DFVREPIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVT 437
D +EP+P A GL +R +E N +GG MSKI+ PFPHR+GT ++Y+
Sbjct: 342 DLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIV 401
Query: 438 NW-QDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLGMNNKSNTSFIQ---- 492
W Q K + ++W+ ++Y +M P+VS PR YVN+ DLDLG + N + +
Sbjct: 402 AWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIE 461
Query: 493 -ATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPL 530
+ +WG YF N+ RL+R KT +DP+N F H QSIPP+
Sbjct: 462 ISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 500
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 341 bits (875), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 203/502 (40%), Positives = 288/502 (57%), Gaps = 40/502 (7%)
Query: 47 STFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRV 106
+ F ++S F L S QN + + KP I P + + + C ++ +R+
Sbjct: 15 TVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRL 74
Query: 107 RSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSK 166
RSGGH YEGLSY S+ TPFI++DL L +S+D+ES +AWV++G+T+GE+YY I E S
Sbjct: 75 RSGGHSYEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSS 132
Query: 167 IHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDREAMGEDLF 226
GF AG C ++G GGHI+GG +G M RKYGL ADNV+DA ++DANG ILDR+AMGED+F
Sbjct: 133 KLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVF 192
Query: 227 WAIRGGGGASFGIILSWKIKLXXXXXXXXXXXXXXXLE-QGATKILYRWQQVADKLDEDL 285
WAIRGGGG +G I +WKIKL + AT +L++WQ VA++L+ED
Sbjct: 193 WAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDF 252
Query: 286 FIRVIIQAAE-------IPERKGQRTISTSYNALFLGGVDRLLQVMQESFPELGLTQKDC 338
+ V+ A E + G +T++ S L FPELGL ++D
Sbjct: 253 TLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLL--------------FPELGLVEEDY 298
Query: 339 IETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNY----FKAKSDFVREPIPETALEGLWK 394
+E SW +S Y+AG E + Q + F + FK K D +EP+P A GL +
Sbjct: 299 LEMSWGESFAYLAGL------ETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLE 352
Query: 395 RFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTNW-QDGDKNMAKHMEWI 453
R +E N +GG MSKI+ PFPHR+GT ++Y+ W Q K + ++W+
Sbjct: 353 RLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWL 412
Query: 454 RRLYNYMAPYVSMLPRAAYVNYRDLDLGMNNKSNTSFIQ-----ATAWGSRYFKDNFMRL 508
++Y +M P+VS PR YVN+ DLDLG + N + + + +WG YF N+ RL
Sbjct: 413 EKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERL 472
Query: 509 VRVKTKVDPDNFFRHEQSIPPL 530
+R KT +DP+N F H QSIPP+
Sbjct: 473 IRAKTLIDPNNVFNHPQSIPPM 494
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 338 bits (866), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 202/502 (40%), Positives = 287/502 (57%), Gaps = 40/502 (7%)
Query: 47 STFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRV 106
+ F ++S F L S QN + + KP I P + + + C ++ +R+
Sbjct: 15 TVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRL 74
Query: 107 RSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSK 166
RSGGH YEGLSY S+ TPFI++DL L +S+D+ES +AWV++G+T+GE+YY I E S
Sbjct: 75 RSGGHSYEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSS 132
Query: 167 IHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDREAMGEDLF 226
GF AG ++G GGHI+GG +G M RKYGL ADNV+DA ++DANG ILDR+AMGED+F
Sbjct: 133 KLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVF 192
Query: 227 WAIRGGGGASFGIILSWKIKLXXXXXXXXXXXXXXXLE-QGATKILYRWQQVADKLDEDL 285
WAIRGGGG +G I +WKIKL + AT +L++WQ VA++L+ED
Sbjct: 193 WAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDF 252
Query: 286 FIRVIIQAAE-------IPERKGQRTISTSYNALFLGGVDRLLQVMQESFPELGLTQKDC 338
+ V+ A E + G +T++ S L FPELGL ++D
Sbjct: 253 TLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLL--------------FPELGLVEEDY 298
Query: 339 IETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNY----FKAKSDFVREPIPETALEGLWK 394
+E SW +S Y+AG E + Q + F + FK K D +EP+P A GL +
Sbjct: 299 LEMSWGESFAYLAGL------ETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLE 352
Query: 395 RFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTNW-QDGDKNMAKHMEWI 453
R +E N +GG MSKI+ PFPHR+GT ++Y+ W Q K + ++W+
Sbjct: 353 RLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWL 412
Query: 454 RRLYNYMAPYVSMLPRAAYVNYRDLDLGMNNKSNTSFIQ-----ATAWGSRYFKDNFMRL 508
++Y +M P+VS PR YVN+ DLDLG + N + + + +WG YF N+ RL
Sbjct: 413 EKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERL 472
Query: 509 VRVKTKVDPDNFFRHEQSIPPL 530
+R KT +DP+N F H QSIPP+
Sbjct: 473 IRAKTLIDPNNVFNHPQSIPPM 494
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 338 bits (866), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 205/519 (39%), Positives = 293/519 (56%), Gaps = 42/519 (8%)
Query: 30 DSFIHCLNSNSDLSVPFSTFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYESH 89
+ + CL N + + F ++S F L S QN + + KP I P +
Sbjct: 3 NDLLSCLTFNGVRN--HTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 60
Query: 90 VQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQ 149
+ + C ++ +R+RSGG YEGLSY S+ TPFI++DL L +S+D+ES +AWV+
Sbjct: 61 LSNTIRCIRKGSWTIRLRSGGASYEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVE 118
Query: 150 TGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIV 209
+G+T+GE+YY I E S GF AG C ++G GGHI+GG +G M RKYGL ADNV+DA ++
Sbjct: 119 SGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILI 178
Query: 210 DANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLXXXXXXXXXXXXXXXLE-QGAT 268
DANG ILDR+AMGED+FWAIRGGGG +G I +WKIKL + AT
Sbjct: 179 DANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEAT 238
Query: 269 KILYRWQQVADKLDEDLFIRVIIQAAE-------IPERKGQRTISTSYNALFLGGVDRLL 321
+L++WQ VA++L+ED + V+ A E + G +T++ S L
Sbjct: 239 SLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLL-------- 290
Query: 322 QVMQESFPELGLTQKDCIETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNY----FKAKS 377
FPELGL ++D +E SW +S Y+AG E + Q + F + FK K
Sbjct: 291 ------FPELGLVEEDYLEMSWGESFAYLAGL------ETVSQLNNRFLKFDERAFKTKV 338
Query: 378 DFVREPIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVT 437
D +EP+P A GL +R +E N +GG MSKI+ PFPHR+GT ++Y+
Sbjct: 339 DLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIV 398
Query: 438 NW-QDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLGMNNKSNTSFIQ---- 492
W Q K + ++W+ ++Y +M P+VS PR YVN+ DLDLG + N + +
Sbjct: 399 AWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIE 458
Query: 493 -ATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPL 530
+ +WG YF N+ RL+R KT +DP+N F H QSIPP+
Sbjct: 459 ISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 497
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 337 bits (865), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 202/502 (40%), Positives = 287/502 (57%), Gaps = 40/502 (7%)
Query: 47 STFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRV 106
+ F ++S F L S QN + + KP I P + + + C ++ +R+
Sbjct: 15 TVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRL 74
Query: 107 RSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSK 166
RSGGH YEGLSY S+ TPFI++DL L +S+D+ES +AWV++G+T+GE+YY I E S
Sbjct: 75 RSGGHSYEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSS 132
Query: 167 IHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDREAMGEDLF 226
GF AG ++G GGHI+GG +G M RKYGL ADNV+DA ++DANG ILDR+AMGED+F
Sbjct: 133 KLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVF 192
Query: 227 WAIRGGGGASFGIILSWKIKLXXXXXXXXXXXXXXXLE-QGATKILYRWQQVADKLDEDL 285
WAIRGGGG +G I +WKIKL + AT +L++WQ VA++L+ED
Sbjct: 193 WAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDF 252
Query: 286 FIRVIIQAAE-------IPERKGQRTISTSYNALFLGGVDRLLQVMQESFPELGLTQKDC 338
+ V+ A E + G +T++ S L FPELGL ++D
Sbjct: 253 TLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLL--------------FPELGLVEEDY 298
Query: 339 IETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNY----FKAKSDFVREPIPETALEGLWK 394
+E SW +S Y+AG E + Q + F + FK K D +EP+P A GL +
Sbjct: 299 LEMSWGESFAYLAGL------ETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLE 352
Query: 395 RFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTNW-QDGDKNMAKHMEWI 453
R +E N +GG MSKI+ PFPHR+GT ++Y+ W Q K + ++W+
Sbjct: 353 RLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWL 412
Query: 454 RRLYNYMAPYVSMLPRAAYVNYRDLDLGMNNKSNTSFIQ-----ATAWGSRYFKDNFMRL 508
++Y +M P+VS PR YVN+ DLDLG + N + + + +WG YF N+ RL
Sbjct: 413 EKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERL 472
Query: 509 VRVKTKVDPDNFFRHEQSIPPL 530
+R KT +DP+N F H QSIPP+
Sbjct: 473 IRAKTLIDPNNVFNHPQSIPPM 494
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 124/484 (25%), Positives = 223/484 (46%), Gaps = 50/484 (10%)
Query: 77 KPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFI--IVDLARL 134
+P+ ++ V AV + G + VRSGGH +EG ++ P + ++D++++
Sbjct: 55 RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGF-----VDDPAVRAVIDMSQM 109
Query: 135 RAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMR 194
R + D + V+ GAT+GE Y + + PAG+C +GVGGH+ GG YG + R
Sbjct: 110 RQVFYDSGKRAFAVEPGATLGETYRALYLDWGVT-IPAGVCPQVGVGGHVLGGGYGPLSR 168
Query: 195 KYGLGADNV--LDARIVDANG---KILDREAMGE---DLFWAIRGGGGASFGIILSWKIK 246
+ G+ AD++ ++ +VDA+G K++ A + +L+WA GGGG +FGI+ + +
Sbjct: 169 RDGVVADHLYAVEVVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFR 228
Query: 247 LXXXXXXXXXXXXXXXLEQGATKILYR---WQQVADKLDEDLFIRVII-QAAEIPERKGQ 302
L + T L W A L E+ F R+I A
Sbjct: 229 ----TPGATGTDPSQLLPKAPTSTLRHIVTWDWSA--LTEEAFTRIIDNHGAWHQSNSAA 282
Query: 303 RTISTSYNALFLGGVDRLLQVMQESFPELGLTQKDCIETSWIKSVLYIAGYPSNTPPEVL 362
T S +++F Q++ + + GL + + ++ +V G
Sbjct: 283 GTPYASMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVNEGTGVEPAVQRSTE 342
Query: 363 LQGKSTFKNYF--------KAKSDFVREPIPETALEGLWKRFLEEE---GPLSIWNPYGG 411
++T N F K+K ++R+P L++ + G +S+++ YGG
Sbjct: 343 PWLRATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHLSADSQVWGEVSLYS-YGG 401
Query: 412 MMSKIAESAIPFPHRNGTLFKIQYVTNWQDGDKNMAKHMEWIRRLYNYMAPYVSMLP--- 468
++ + E+A R+ ++ K+ W D + A ++ WIR +Y + +P
Sbjct: 402 KVNSVPETATATAQRD-SIIKVWMSATWMDPAHDDA-NLAWIREIYREIFATTGGVPVPD 459
Query: 469 ---RAAYVNYRDLDLGMNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQ 525
++NY D+DL ++ + NTS + W + Y+K N+ RL +VK + DP + FRH
Sbjct: 460 DRTEGTFINYPDVDL-VDERWNTSGVP---WYTLYYKGNYPRLQKVKARWDPRDVFRHAL 515
Query: 526 SIPP 529
S+ P
Sbjct: 516 SVRP 519
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 132/486 (27%), Positives = 226/486 (46%), Gaps = 52/486 (10%)
Query: 77 KPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRA 136
+P++I V AV + + G + VRSGGH +E +++ +I+D++ L
Sbjct: 57 EPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFEDFVDNPDVK---VIIDMSLLTE 113
Query: 137 ISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKY 196
I+ D N+ ++ G T+ EVY ++ + P G+C +GVGGHI GG YG + R++
Sbjct: 114 IAYDPSMNAFLIEPGNTLSEVYEKLYLGWNV-TIPGGVCGGVGVGGHICGGGYGPLSRQF 172
Query: 197 GLGADNV--LDARIVDANGK------ILDREAMGEDLFWAIRGGGGASFGIILSWKIKLX 248
G D + ++ +V+ GK +R+ DL+WA GGGG +FG++ + +++
Sbjct: 173 GSVVDYLYAVEVVVVNKQGKARVIVATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMRVP 232
Query: 249 XXXXXXXXXXXXXXLEQGATK-ILYRWQQVADKLDEDLFIRVIIQAAEIPERK-GQRTIS 306
T + + W + E F R++ E ER G +
Sbjct: 233 EDVGRNPERLLPKPPATLLTSTVTFDWA----GMTEAAFSRLLRNHGEWYERNSGPDSPY 288
Query: 307 TS-YNALFLGGVDRLLQVMQES---FP-ELGLTQKDC--IETSWIKSVLYIAGYPSNTPP 359
T ++ L +G + M ES P ++ T+ D + + I++V I G P P
Sbjct: 289 TGLWSQLMIGNE---VPGMGESGFMMPIQVDATRPDARRLLDAHIEAV--IDGVPPAEVP 343
Query: 360 EVLLQ-------GKSTFKNYFKAKSDFVREPIPETALEGLWKRFLEEEGPL--SIW-NPY 409
E + Q G+ K K+ ++R+ + + ++ +++ +G ++W Y
Sbjct: 344 EPIEQRWLASTPGRGGRGPASKTKAGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIGY 403
Query: 410 GGMMSKIAESAIPFPHRNGTLFKIQYVTNWQDGDKNMAKHMEWIRRLYNYM------APY 463
GG ++ + +A P R+ L K+ Y+T W + N AKH+ W+R+LY + P
Sbjct: 404 GGKVNTVDPAATALPQRDAIL-KVNYITGWAN-PGNEAKHLTWVRKLYADVYAETGGVPV 461
Query: 464 VSMLPRAAYVNYRDLDLGMNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFFRH 523
+ + AY+NY D DL + NTS + W Y+K N RL +VK DP N F H
Sbjct: 462 PNDVSDGAYINYPDSDLA-DPGLNTSGV---PWHDLYYKGNHPRLRKVKAAYDPRNHFHH 517
Query: 524 EQSIPP 529
SI P
Sbjct: 518 ALSIRP 523
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 107/471 (22%), Positives = 194/471 (41%), Gaps = 73/471 (15%)
Query: 88 SHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARL-RAISVDIESNSA 146
+H+Q+AV C+K+L + + +SGGH Y + E ++V L R+ IS + ++ A
Sbjct: 47 AHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGE--NGHLMVQLDRMIDVISYNDKTGIA 104
Query: 147 WVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDA 206
V+ GA +G + + +K G C +G+ GH G +G +GL D+V+
Sbjct: 105 HVEPGARLGHLATVLNDKYG-RAISHGTCPGVGISGHFAHGGFGFSSHMHGLAVDSVVGV 163
Query: 207 RIVDANGKILDREAM-GEDLFWAIRGGGGASFGIILSWKIKLXXXXXXXXXXXXXXXLEQ 265
+V A+G+I++ A DLFW I+ G G++FGI+ WK+
Sbjct: 164 TVVLADGRIVEASATENADLFWGIK-GAGSNFGIVAVWKLATFP---------------- 206
Query: 266 GATKILYRWQQVADKLDEDLFIRVIIQAAEIPERKGQRTIS---TSYNA-------LFLG 315
A K+L R+ + ++ ++ I + R ++ Y A L+ G
Sbjct: 207 -APKVLTRFGVTLNWKNKTSALKGIEAVEDYARWVAPREVNFRIGDYGAGNPGIEGLYYG 265
Query: 316 GVDRLLQVMQESFPEL--GLTQKDCIETSWIKSVLYIAGYP-----SNTPPEVLLQGKST 368
++ Q L G +WI+SVL + + + P E T
Sbjct: 266 TPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSLT 325
Query: 369 FKNYFKAKSDFVRE------PIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAIP 422
K+ K D V+ + + W L+ G + ++K+ +
Sbjct: 326 LKS---IKGDAVKNFVDYYFDVSNKVKDRFWFYQLDVHGGKN------SQVTKVTNAETA 376
Query: 423 FPHRNGTLFKIQYVTNWQDGDKNMAKHMEWIRRLYNYMAPYVSMLPRA---AYVNYRDLD 479
+PHR+ L+ IQ+ + D N + L ++ LP++ Y+NY D
Sbjct: 377 YPHRD-KLWLIQFYDRY---DNNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYADPR 432
Query: 480 LGMNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPL 530
+ + + Y+ +N RL ++K K DP + F + Q++ P+
Sbjct: 433 MDRDYATKV-----------YYGENLARLQKLKAKFDPTDRFYYPQAVRPV 472
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 124/507 (24%), Positives = 211/507 (41%), Gaps = 73/507 (14%)
Query: 63 SSAQNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEI 122
S + N R++ +PE F P V A++ + G + RSGGH G +V
Sbjct: 24 SHSDNHRFVV----EPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGH--CGQDFVG-- 75
Query: 123 ETPF--IIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGV 180
TP +++DL L AI + V +GAT+ +V + + P G C+++G+
Sbjct: 76 -TPRRDLVLDLHNLHAIGPAADGAGVRVGSGATVDQVQKALFRRWNA-ALPLGACSAVGM 133
Query: 181 GGHITGGAYGSMMRKYGLGADNV--LDARIVDANGKILDREAMGED------LFWAIRGG 232
GG + GG YG + R+ GL D++ ++ +VD + + A +D LFWA GG
Sbjct: 134 GGLVAGGGYGPLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGELFWAHTGG 193
Query: 233 GGASFGIILSWKIKLXXXXXXXXXXXXXXXLEQGATKILYRWQQVADKLDEDLFIRVIIQ 292
GG +FG++ +++ + K+++ W + DE F+ V+ +
Sbjct: 194 GGGNFGVVTAYEFRSPEHLATEPVGLPRAAGRLHVQKVVFPWAMI----DETSFVTVMRR 249
Query: 293 AAEIPERKGQ--RTISTSYNALFLGGVDR-LLQVMQESFPEL------------GLTQKD 337
E ER + S+ + F+ V +LQ+M + ++ LT+
Sbjct: 250 FFEWHERHSEPGSPESSLFATFFVNHVSSGVLQLMVQQDADVDPEGEILARFVASLTEGT 309
Query: 338 CI-------ETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNYFKAKSDFVREPIPETALE 390
+ SW+ Y++ +V+ ++ Y +A P
Sbjct: 310 GVVGIPRGGVMSWLTGTRYMSQADCG---DVMGARSASKSAYHRAA--------PTDEQL 358
Query: 391 GLWKRFLEEEGP----LSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTNWQDGDKNM 446
+ R L + P ++N YGG +++ S P R+ ++ K + + WQD + +
Sbjct: 359 SVLHRHLHADHPGQASYVMFNSYGGEINRRGPSDAAVPQRD-SVVKSSWFSAWQDAELD- 416
Query: 447 AKHMEWIRRLYN------YMAPYVSMLPRAAYVNYRDLDLGMNNKSNTSFIQATAWGSRY 500
H+ W+R LY P Y+NY D DL ++ N S W Y
Sbjct: 417 ELHLGWLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADL-LDPARNRS---GEPWHHLY 472
Query: 501 FKDNFMRLVRVKTKVDPDNFFRHEQSI 527
+KDN+ RL K DP N F H SI
Sbjct: 473 YKDNYARLRSAKRAWDPLNTFHHSMSI 499
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 112/474 (23%), Positives = 178/474 (37%), Gaps = 72/474 (15%)
Query: 75 MPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARL 134
+ +P I L V +V + G+ + VRSGGH+ G + I++DL +
Sbjct: 36 LQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYA----TNDGGIVLDLRLM 91
Query: 135 RAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPA--GLCTSLGVGGHITGGAYGSM 192
+I +D + A + G G++ + E +K G A G+ +G G G G +
Sbjct: 92 NSIHIDTAGSRARIGGGVISGDL---VKEAAKF-GLAAVTGMHPKVGFCGLALNGGVGFL 147
Query: 193 MRKYGLGADNVLDARIVDANGKIL---DREAMGEDLFWAIRGGGGASFGIILSWKIKLXX 249
KYGL +DN+L A +V A G ++ D E +LFWA+R G G +FG++ +++L
Sbjct: 148 TPKYGLASDNILGATLVTATGDVIYCSDDER--PELFWAVR-GAGPNFGVVTEVEVQLYE 204
Query: 250 XXXXXXX-----XXXXXXLEQGATKILYRWQQVADKLDEDLFIRVIIQAAEIPERKGQRT 304
L T +L ++AD + +F+ V R
Sbjct: 205 LPRKMLAGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGV----------DENRA 254
Query: 305 ISTSYNALFLGGVDRLLQVMQESFPELGLTQKDCIETSWIKSVLYIAGYPSNTPPEVLLQ 364
S + LGG+D + + LG T D I V+ + N
Sbjct: 255 PSVTVCVGHLGGLD-IAERDIARLRGLGRTVSDSIAVRSYDEVVAL-----NAEVGSFED 308
Query: 365 GKSTF---KNYFKAKSDFVREPIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAI 421
G S + + F A+ G +F+ E P G K+ +
Sbjct: 309 GMSNLWIDREIAMPNARFAE------AIAGNLDKFVSE--------PASGGSVKLEIEGM 354
Query: 422 PF------PHRNGTLFKIQYVTNWQDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNY 475
PF P R+ + + W K+ E R L + L RA
Sbjct: 355 PFGNPKRTPARHRDAMGVLALAEWSGAAPGSEKYPELARELD-------AALLRAGVTTS 407
Query: 476 RDLDLGMNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPP 529
G +N S + A Y + + RL VK + DP+N FRH +I P
Sbjct: 408 -----GFGLLNNNSEVTAEMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNIDP 456
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 409 YGGMMSKIAESAIPFPHRNGTLFKIQYVTNWQDGDKNMAKHMEWIRRLYNYMAPYVSMLP 468
YGG ++ + R+ ++ KI YVT W+D ++ H+ WIR LY + +P
Sbjct: 407 YGGKVNAVPADRTAVAQRD-SILKIVYVTTWEDPAQDPV-HVRWIRELYRDVYADTGGVP 464
Query: 469 ------RAAYVNYRDLDLGMNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFFR 522
AYVNY D+DL + + NTS + W Y+KD + RL VK + DP N FR
Sbjct: 465 VPGGAADGAYVNYPDVDLA-DEEWNTSGVP---WSELYYKDAYPRLQAVKARWDPRNVFR 520
Query: 523 HEQS--IPP 529
H S +PP
Sbjct: 521 HALSVRVPP 529
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 16/171 (9%)
Query: 66 QNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETP 125
+NLR++ PE I + ++ + + + G + VRSGGH YE S++
Sbjct: 51 ENLRFVG----DPEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDVR-- 104
Query: 126 FIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHIT 185
+++D++RL A+ D E + V+ GAT+G VY + + P G C +G GGHI
Sbjct: 105 -VVMDMSRLSAVGFDEERGAFAVEAGATLGAVYKTLFRVWGVT-LPGGACPDVGAGGHIL 162
Query: 186 GGAYGSMMRKYGLGAD--NVLDARIVDANGK----ILDREAM--GEDLFWA 228
GG YG + R +G D + ++ +VDA+G I RE DL+WA
Sbjct: 163 GGGYGPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWA 213
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 112/476 (23%), Positives = 190/476 (39%), Gaps = 62/476 (13%)
Query: 78 PEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI 137
P I P + AAV C G+ + + GGH Y + E ++++L R+ +
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGG--EDGHLMLELDRMYRV 100
Query: 138 SVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYG 197
SVD ++N A +Q GA +G + ++ G C ++GVGGH+ GG YG +G
Sbjct: 101 SVD-DNNVATIQGGARLGYTALELLDQGN-RALSHGTCPAVGVGGHVLGGGYGFATHTHG 158
Query: 198 LGADNVLDARIVDANGKILD-REAMGEDLFWAIRGGGGASFGIILSWKIKLXXXXXXXXX 256
L D ++ A +V A+ I+ E DLFWA+RGGGG F I+ ++
Sbjct: 159 LTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIITT 217
Query: 257 XXXXXXLEQ----GATKILYRWQQVADKLDEDLFIRVIIQAAEIPERKGQRTISTSYNAL 312
+ K L W Q + + +L +R+ I A + ++
Sbjct: 218 YQVTTTWNRKQHVAGLKALQDWAQ--NTMPRELSMRLEINANAL-----------NWEGN 264
Query: 313 FLGGVDRLLQVMQESFPELG--LTQKDCIETSW---IKSVLYIAGYPSNTPPEVLLQGKS 367
F G L +++Q + G T +ET W I + LY A ++ +
Sbjct: 265 FFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGA--------DLNITYNY 316
Query: 368 TFKNYFKAKSDFVREPIPETALEGLWKRFLEE------EGPLSIWNPYGGMMSKIA---E 418
YF A S + + A++ + G W+ +GG S +A
Sbjct: 317 DVHEYFYANS-LTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSN 375
Query: 419 SAIPFPHRNGTLFKIQYVTNWQDGDKNMAKHME-WIRRLYNYMAPYVSMLP---RAAYVN 474
+ HR+ L+ Q+ + D + N + + E + ++A LP + Y N
Sbjct: 376 DETAYAHRD-QLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFN 434
Query: 475 YRDLDLGMNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPL 530
Y D L Y++ N +L +K K DP++ F + S+ P+
Sbjct: 435 YADTTLTKEEAQKL-----------YWRGNLEKLQAIKAKYDPEDVFGNVVSVEPI 479
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 111/476 (23%), Positives = 189/476 (39%), Gaps = 62/476 (13%)
Query: 78 PEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI 137
P I P + AAV C G+ + + GGH Y + E ++++L R+ +
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGG--EDGHLMLELDRMYRV 100
Query: 138 SVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYG 197
SVD ++N A +Q GA +G + ++ G ++GVGGH+ GG YG +G
Sbjct: 101 SVD-DNNVATIQGGARLGYTALELLDQGN-RALSHGTAPAVGVGGHVLGGGYGFATHTHG 158
Query: 198 LGADNVLDARIVDANGKILD-REAMGEDLFWAIRGGGGASFGIILSWKIKLXXXXXXXXX 256
L D ++ A +V A+ I+ E DLFWA+RGGGG F I+ ++
Sbjct: 159 LTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIITT 217
Query: 257 XXXXXXLEQ----GATKILYRWQQVADKLDEDLFIRVIIQAAEIPERKGQRTISTSYNAL 312
+ K L W Q + + +L +R+ I A + ++
Sbjct: 218 YQVTTTWNRKQHVAGLKALQDWAQ--NTMPRELSMRLEINANAL-----------NWEGN 264
Query: 313 FLGGVDRLLQVMQESFPELG--LTQKDCIETSW---IKSVLYIAGYPSNTPPEVLLQGKS 367
F G L +++Q + G T +ET W I + LY A ++ +
Sbjct: 265 FFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGA--------DLNITYNY 316
Query: 368 TFKNYFKAKSDFVREPIPETALEGLWKRFLEE------EGPLSIWNPYGGMMSKIA---E 418
YF A S + + A++ + G W+ +GG S +A
Sbjct: 317 DVHEYFYANS-LTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSN 375
Query: 419 SAIPFPHRNGTLFKIQYVTNWQDGDKNMAKHME-WIRRLYNYMAPYVSMLP---RAAYVN 474
+ HR+ L+ Q+ + D + N + + E + ++A LP + Y N
Sbjct: 376 DETAYAHRD-QLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFN 434
Query: 475 YRDLDLGMNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPL 530
Y D L Y++ N +L +K K DP++ F + S+ P+
Sbjct: 435 YADTTLTKEEAQKL-----------YWRGNLEKLQAIKAKYDPEDVFGNVVSVEPI 479
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 127 IIVDLARLRAI-SVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHIT 185
+++ L R I +D SN+ V+ GA + V + AE ++ G S +GG+++
Sbjct: 98 VVISLKRXDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLS 157
Query: 186 GGAYGSMMRKYGLGADNVLDARIVDANGKI------LDREAMGEDLFWAIRGGGGASFGI 239
A G+ YGL D L +V A+G++ L ++ G DL G G + GI
Sbjct: 158 TNAGGTAALAYGLARDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAEG-TLGI 216
Query: 240 ILSWKIKL 247
I + +KL
Sbjct: 217 ITAATLKL 224
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
Length = 403
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 180 VGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDREAMG--EDLFWAIRGGGGASF 237
VGG I +G G ++V ++ ANG++ G DLFWA GG G +
Sbjct: 65 VGGAIGCDIHGKNHHSAGSFGNHVRSMELLTANGEVRHLTPAGPDSDLFWATVGGNGLT- 123
Query: 238 GIILSWKIKL 247
GIIL I++
Sbjct: 124 GIILRATIEM 133
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Hexagonal Crystal Form
pdb|4FDO|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct319
pdb|4FDP|A Chain A, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FDP|B Chain B, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FEH|A Chain A, Mycobacterium Tuberculosis Dpre1 - Hexagonal Crystal Form
pdb|4FF6|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
pdb|4FF6|B Chain B, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
Length = 481
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 19/131 (14%)
Query: 127 IIVDLARLRAI-SVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGL-------CTSL 178
+++D+ L I S+D ++ + G + ++ P GL +
Sbjct: 90 LVIDMTPLNTIHSIDADTKLVDIDAGVNLDQLMKA--------ALPFGLWVPVLPGTRQV 141
Query: 179 GVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDREAMGED--LFWAIRGGGGAS 236
VGG I +G G ++V ++ A+G+I GED LFWA GG G +
Sbjct: 142 TVGGAIACDIHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPTGEDAELFWATVGGNGLT 201
Query: 237 FGIILSWKIKL 247
GII+ I++
Sbjct: 202 -GIIMRATIEM 211
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 178 LGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD-REAMGEDLFWAIRGGGGAS 236
L VGG ++ +YG NV + +V NG ++ E +LF+++ GG G
Sbjct: 166 LTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVLGGLG-Q 224
Query: 237 FGIILSWKIKL 247
FGII ++ L
Sbjct: 225 FGIITRARVLL 235
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With
Fad And Covalently Bound Btz043
Length = 468
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 180 VGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDREAMG--EDLFWAIRGGGGASF 237
VGG I +G G ++V ++ ANG++ G DLFWA GG G +
Sbjct: 130 VGGAIGCDIHGKNHHSAGSFGNHVRSMELLTANGEVRHLTPAGPDSDLFWATVGGNGLT- 188
Query: 238 GIILSWKIKL 247
GIIL I++
Sbjct: 189 GIILRATIEM 198
>pdb|2FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (fhua) From E.coli
Length = 723
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 23/113 (20%)
Query: 119 VSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGF-------- 170
+++ E F V+ +RA V+IE+ +A + +G Y AE + +
Sbjct: 559 MADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQV 618
Query: 171 PAGLCT---------------SLGVGGHITGGAYGSMMRKYGLGADNVLDARI 208
P + + +LG GG TG +YG + +G+ V+DA +
Sbjct: 619 PKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALV 671
>pdb|1QJQ|A Chain A, Ferric Hydroxamate Receptor From Escherichia Coli (fhua)
pdb|1QKC|A Chain A, Escherichia Coli Ferric Hydroxamate Uptake Receptor (Fhua)
In Complex Delta Two-Albomycin
pdb|1QFG|A Chain A, E. Coli Ferric Hydroxamate Receptor (Fhua)
pdb|2GRX|A Chain A, Crystal Structure Of Tonb In Complex With Fhua, E. Coli
Outer Membrane Receptor For Ferrichrome
pdb|2GRX|B Chain B, Crystal Structure Of Tonb In Complex With Fhua, E. Coli
Outer Membrane Receptor For Ferrichrome
Length = 725
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 23/113 (20%)
Query: 119 VSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGF-------- 170
+++ E F V+ +RA V+IE+ +A + +G Y AE + +
Sbjct: 561 MADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQV 620
Query: 171 PAGLCT---------------SLGVGGHITGGAYGSMMRKYGLGADNVLDARI 208
P + + +LG GG TG +YG + +G+ V+DA +
Sbjct: 621 PKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALV 673
>pdb|1FI1|A Chain A, Fhua In Complex With Lipopolysaccharide And Rifamycin
Cgp4832
Length = 707
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 23/113 (20%)
Query: 119 VSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGF-------- 170
+++ E F V+ +RA V+IE+ +A + +G Y AE + +
Sbjct: 543 MADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQV 602
Query: 171 PAGLCT---------------SLGVGGHITGGAYGSMMRKYGLGADNVLDARI 208
P + + +LG GG TG +YG + +G+ V+DA +
Sbjct: 603 PKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALV 655
>pdb|1QFF|A Chain A, E. Coli Ferric Hydroxamate Uptake Receptor (Fhua) In
Complex With Bound Ferrichrome-Iron
Length = 725
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 23/112 (20%)
Query: 120 SEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGF----PAGLC 175
++ E F V+ +RA V+IE+ +A + +G Y AE + + PA +
Sbjct: 562 ADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVP 621
Query: 176 T-------------------SLGVGGHITGGAYGSMMRKYGLGADNVLDARI 208
+LG GG TG +YG + +G+ V+DA +
Sbjct: 622 KHXASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALV 673
>pdb|1FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (Fhua) From E.Coli In
Complex With Bound Ferrichrome-Iron
Length = 705
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 27/114 (23%)
Query: 120 SEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSK------------- 166
++ E F V+ +RA V+IE+ +A + +G Y AE +
Sbjct: 542 ADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVP 601
Query: 167 ------------IHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARI 208
G +GL +LG GG TG +YG + +G+ V+DA +
Sbjct: 602 KHXASLWADYTFFDGPLSGL--TLGTGGRYTGSSYGDPANSFKVGSYTVVDALV 653
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 178 LGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD-REAMGEDLFWAIRGGGGAS 236
L VGG ++ ++G NVL+ ++ +G+++ + + DLF A+ GG G
Sbjct: 155 LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-Q 213
Query: 237 FGIILSWKIKL 247
FG+I +I +
Sbjct: 214 FGVITRARIAV 224
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 178 LGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD-REAMGEDLFWAIRGGGGAS 236
L VGG ++ ++G NVL+ ++ +G+++ + + DLF A+ GG G
Sbjct: 155 LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-Q 213
Query: 237 FGIILSWKIKL 247
FG+I +I +
Sbjct: 214 FGVITRARIAV 224
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 178 LGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD-REAMGEDLFWAIRGGGGAS 236
L VGG ++ ++G NVL+ ++ +G+++ + + DLF A+ GG G
Sbjct: 173 LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-Q 231
Query: 237 FGIILSWKIKL 247
FG+I +I +
Sbjct: 232 FGVITRARIAV 242
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 178 LGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD-REAMGEDLFWAIRGGGGAS 236
L VGG ++ ++G NVL+ ++ +G+++ + + DLF A+ GG G
Sbjct: 155 LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-Q 213
Query: 237 FGIILSWKIKL 247
FG+I +I +
Sbjct: 214 FGVITRARIAV 224
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 178 LGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD-REAMGEDLFWAIRGGGGAS 236
L VGG ++ ++G NVL+ ++ +G+++ + + DLF A+ GG G
Sbjct: 155 LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-Q 213
Query: 237 FGIILSWKIKL 247
FG+I +I +
Sbjct: 214 FGVITRARIAV 224
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 178 LGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD-REAMGEDLFWAIRGGGGAS 236
L VGG ++ ++G NVL+ ++ +G+++ + + DLF A+ GG G
Sbjct: 155 LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-Q 213
Query: 237 FGIILSWKIKL 247
FG+I +I +
Sbjct: 214 FGVITRARIAV 224
>pdb|1BY3|A Chain A, Fhua From E. Coli
pdb|1BY5|A Chain A, Fhua From E. Coli, With Its Ligand Ferrichrome
Length = 714
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%)
Query: 119 VSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGF-------- 170
+++ E F V+ +RA V+IE+ + +G Y AE + +
Sbjct: 550 MADPEGSFFSVEGGEIRARGVEIEAKRPLSASVNVVGSYTYTDAEYTTDTTYKGNTPAQV 609
Query: 171 PAGLCT---------------SLGVGGHITGGAYGSMMRKYGLGADNVLDARI 208
P + + +LG GG TG +YG + +G+ V+DA +
Sbjct: 610 PKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALV 662
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,958,713
Number of Sequences: 62578
Number of extensions: 673889
Number of successful extensions: 1481
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1353
Number of HSP's gapped (non-prelim): 53
length of query: 535
length of database: 14,973,337
effective HSP length: 103
effective length of query: 432
effective length of database: 8,527,803
effective search space: 3684010896
effective search space used: 3684010896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)