Query 009399
Match_columns 535
No_of_seqs 274 out of 2280
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 12:38:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 1.2E-38 2.6E-43 339.3 43.1 190 67-263 54-254 (525)
2 TIGR01678 FAD_lactone_ox sugar 100.0 5.8E-33 1.3E-37 293.7 35.1 196 69-278 6-204 (438)
3 TIGR01677 pln_FAD_oxido plant- 100.0 1.7E-32 3.6E-37 295.9 32.3 183 69-255 23-216 (557)
4 TIGR01679 bact_FAD_ox FAD-link 100.0 2.9E-32 6.3E-37 288.1 31.7 175 69-255 3-180 (419)
5 COG0277 GlcD FAD/FMN-containin 100.0 2.5E-32 5.4E-37 293.7 31.4 186 74-264 28-220 (459)
6 PLN02805 D-lactate dehydrogena 100.0 5.7E-33 1.2E-37 300.2 23.1 192 76-273 132-330 (555)
7 TIGR01676 GLDHase galactonolac 100.0 1.8E-32 3.9E-37 291.7 22.9 196 69-278 53-251 (541)
8 PRK11230 glycolate oxidase sub 100.0 4.6E-32 1E-36 291.6 23.4 196 74-273 52-253 (499)
9 TIGR00387 glcD glycolate oxida 100.0 1.5E-30 3.2E-35 275.3 19.5 190 81-274 1-197 (413)
10 PRK11282 glcE glycolate oxidas 100.0 5.8E-30 1.3E-34 261.9 20.0 170 86-262 3-181 (352)
11 KOG1231 Proteins containing th 100.0 2.8E-29 6.2E-34 252.4 23.8 174 74-252 60-240 (505)
12 PLN02465 L-galactono-1,4-lacto 100.0 1.6E-28 3.6E-33 263.5 23.7 177 69-254 88-267 (573)
13 PF01565 FAD_binding_4: FAD bi 99.9 6E-27 1.3E-31 210.8 12.6 136 78-217 1-137 (139)
14 PRK11183 D-lactate dehydrogena 99.9 1.3E-24 2.9E-29 228.1 18.3 197 75-275 36-290 (564)
15 KOG4730 D-arabinono-1, 4-lacto 99.9 9.7E-24 2.1E-28 212.6 17.0 183 70-260 42-227 (518)
16 PRK13905 murB UDP-N-acetylenol 99.9 5E-24 1.1E-28 215.6 12.4 162 76-251 29-193 (298)
17 KOG1232 Proteins containing th 99.9 2.6E-23 5.6E-28 204.6 11.3 188 65-256 77-271 (511)
18 KOG1233 Alkyl-dihydroxyacetone 99.8 1.1E-20 2.4E-25 186.3 15.1 190 72-263 155-352 (613)
19 PRK12436 UDP-N-acetylenolpyruv 99.8 8.1E-21 1.8E-25 191.9 12.5 162 75-250 34-197 (305)
20 TIGR00179 murB UDP-N-acetyleno 99.8 9.2E-21 2E-25 189.9 12.6 161 76-249 11-174 (284)
21 PRK14652 UDP-N-acetylenolpyruv 99.8 1.6E-20 3.4E-25 189.4 13.5 162 75-251 33-196 (302)
22 PRK13906 murB UDP-N-acetylenol 99.8 1.8E-20 4E-25 189.3 12.9 160 76-249 35-196 (307)
23 PRK13903 murB UDP-N-acetylenol 99.8 1.5E-19 3.2E-24 185.5 14.3 162 76-250 31-196 (363)
24 PRK14649 UDP-N-acetylenolpyruv 99.8 6.3E-19 1.4E-23 177.4 15.8 164 76-250 19-192 (295)
25 PRK14653 UDP-N-acetylenolpyruv 99.7 7.3E-17 1.6E-21 161.9 12.7 159 76-250 32-193 (297)
26 PF08031 BBE: Berberine and be 99.7 3.3E-17 7.1E-22 118.0 3.6 47 471-528 1-47 (47)
27 COG0812 MurB UDP-N-acetylmuram 99.6 1.4E-15 3E-20 149.8 13.3 164 75-250 18-183 (291)
28 PRK14650 UDP-N-acetylenolpyruv 99.6 2.7E-15 5.8E-20 150.1 12.0 162 76-251 31-195 (302)
29 PRK00046 murB UDP-N-acetylenol 99.6 2.9E-15 6.4E-20 152.1 11.0 161 76-250 19-188 (334)
30 PRK14648 UDP-N-acetylenolpyruv 99.6 2.1E-14 4.6E-19 145.6 12.6 165 76-250 28-236 (354)
31 KOG1262 FAD-binding protein DI 99.5 6.9E-14 1.5E-18 138.9 7.7 125 128-254 105-232 (543)
32 PRK14651 UDP-N-acetylenolpyruv 99.4 3.6E-12 7.8E-17 125.9 13.9 149 77-250 20-170 (273)
33 PRK13904 murB UDP-N-acetylenol 99.1 3.4E-10 7.4E-15 110.9 9.9 142 77-251 18-160 (257)
34 PF00941 FAD_binding_5: FAD bi 95.5 0.018 3.9E-07 53.6 4.6 78 78-160 2-80 (171)
35 PRK09799 putative oxidoreducta 94.6 0.12 2.5E-06 51.5 7.8 138 80-246 4-155 (258)
36 PRK09971 xanthine dehydrogenas 94.0 0.17 3.6E-06 51.3 7.5 102 80-187 6-118 (291)
37 TIGR03312 Se_sel_red_FAD proba 93.6 0.25 5.4E-06 49.1 7.8 138 81-246 4-154 (257)
38 TIGR02963 xanthine_xdhA xanthi 92.4 0.43 9.3E-06 51.6 8.0 151 78-246 192-357 (467)
39 PF09265 Cytokin-bind: Cytokin 90.5 0.17 3.7E-06 50.5 2.4 33 494-527 248-280 (281)
40 TIGR03195 4hydrxCoA_B 4-hydrox 90.5 0.55 1.2E-05 48.1 6.1 76 79-159 5-81 (321)
41 PLN00107 FAD-dependent oxidore 90.2 0.77 1.7E-05 45.0 6.5 22 503-524 176-197 (257)
42 TIGR03199 pucC xanthine dehydr 89.3 0.48 1E-05 47.3 4.6 70 84-159 1-73 (264)
43 PF04030 ALO: D-arabinono-1,4- 86.7 0.63 1.4E-05 46.2 3.6 27 496-524 228-254 (259)
44 PLN02906 xanthine dehydrogenas 82.8 2.4 5.2E-05 51.9 6.7 80 78-163 228-309 (1319)
45 PLN00192 aldehyde oxidase 82.7 3.2 6.9E-05 50.9 7.6 84 78-164 233-317 (1344)
46 PF02913 FAD-oxidase_C: FAD li 82.3 3.6 7.8E-05 39.7 6.7 27 496-522 217-244 (248)
47 TIGR02969 mam_aldehyde_ox alde 81.5 4.2 9E-05 49.8 8.0 76 79-162 237-316 (1330)
48 COG1319 CoxM Aerobic-type carb 74.1 12 0.00026 37.7 7.5 77 78-159 3-81 (284)
49 COG4630 XdhA Xanthine dehydrog 64.3 15 0.00031 38.1 5.7 141 78-230 203-352 (493)
50 TIGR00387 glcD glycolate oxida 64.1 11 0.00024 40.1 5.3 28 495-522 382-410 (413)
51 cd02875 GH18_chitobiase Chitob 60.8 23 0.0005 36.9 6.9 81 7-108 2-84 (358)
52 PLN02805 D-lactate dehydrogena 57.9 26 0.00057 38.8 7.0 34 495-529 516-550 (555)
53 COG0351 ThiD Hydroxymethylpyri 47.0 44 0.00095 33.2 5.8 104 30-165 119-225 (263)
54 PRK11230 glycolate oxidase sub 45.1 16 0.00035 39.9 2.8 29 495-523 439-468 (499)
55 PRK11282 glcE glycolate oxidas 41.8 16 0.00035 38.0 2.0 21 502-522 323-344 (352)
56 COG4981 Enoyl reductase domain 39.8 38 0.00081 36.9 4.3 68 31-106 112-181 (717)
57 KOG4730 D-arabinono-1, 4-lacto 39.8 17 0.00036 38.7 1.7 20 503-522 485-504 (518)
58 COG1519 KdtA 3-deoxy-D-manno-o 37.4 1.9E+02 0.0041 30.8 8.9 34 77-110 260-293 (419)
59 PF02601 Exonuc_VII_L: Exonucl 35.5 49 0.0011 33.7 4.4 54 51-111 22-87 (319)
60 PF03941 INCENP_ARK-bind: Inne 34.1 17 0.00037 27.1 0.5 35 493-533 18-52 (57)
61 COG4359 Uncharacterized conser 33.0 46 0.00099 31.2 3.2 25 90-114 78-102 (220)
62 PF03614 Flag1_repress: Repres 31.3 36 0.00077 30.5 2.1 40 80-119 8-48 (165)
63 PF10740 DUF2529: Protein of u 30.0 1.3E+02 0.0029 27.8 5.7 69 79-152 85-154 (172)
64 KOG3282 Uncharacterized conser 28.2 72 0.0016 29.7 3.6 36 69-106 118-153 (190)
65 PRK00286 xseA exodeoxyribonucl 27.8 65 0.0014 34.6 3.9 54 51-111 143-204 (438)
66 TIGR00178 monomer_idh isocitra 26.6 5.2E+02 0.011 28.9 10.2 127 87-230 312-460 (741)
67 cd07033 TPP_PYR_DXS_TK_like Py 24.2 1.1E+02 0.0023 27.7 4.1 29 79-107 125-153 (156)
68 cd06568 GH20_SpHex_like A subg 24.2 71 0.0015 32.9 3.3 28 85-112 72-101 (329)
69 PLN02465 L-galactono-1,4-lacto 24.0 44 0.00095 37.2 1.8 27 495-524 538-564 (573)
70 PF15608 PELOTA_1: PELOTA RNA 23.9 95 0.0021 26.1 3.3 50 49-110 39-89 (100)
71 TIGR01676 GLDHase galactonolac 23.9 44 0.00096 36.8 1.8 26 496-524 509-534 (541)
72 cd02742 GH20_hexosaminidase Be 23.7 74 0.0016 32.3 3.3 29 84-112 68-98 (303)
73 PF02779 Transket_pyr: Transke 23.2 1.2E+02 0.0027 27.9 4.4 31 79-109 139-171 (178)
74 cd02429 PTH2_like Peptidyl-tRN 23.1 1.6E+02 0.0035 25.4 4.7 31 77-107 55-85 (116)
75 COG2838 Icd Monomeric isocitra 22.8 2.8E+02 0.006 30.1 7.2 137 87-231 314-463 (744)
76 PRK04322 peptidyl-tRNA hydrola 22.8 1.8E+02 0.004 24.9 5.0 37 76-112 46-83 (113)
77 KOG2499 Beta-N-acetylhexosamin 22.6 72 0.0016 34.3 2.9 33 77-112 242-276 (542)
78 PF04472 DUF552: Protein of un 22.3 1.4E+02 0.0029 23.3 3.8 21 80-100 2-22 (73)
79 cd06570 GH20_chitobiase-like_1 21.6 87 0.0019 32.0 3.3 28 85-112 65-94 (311)
80 PF00728 Glyco_hydro_20: Glyco 21.6 73 0.0016 32.7 2.8 30 84-113 69-100 (351)
81 cd06565 GH20_GcnA-like Glycosy 21.5 86 0.0019 31.8 3.3 29 84-112 56-86 (301)
82 cd06563 GH20_chitobiase-like T 20.6 91 0.002 32.5 3.3 27 86-112 84-112 (357)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=1.2e-38 Score=339.29 Aligned_cols=190 Identities=22% Similarity=0.286 Sum_probs=169.8
Q ss_pred cccCCCCCCCCceEEEEcCCHHHHHHHHHHHH--hcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCC------e-
Q 009399 67 NLRYLTPSMPKPEFIFTPLYESHVQAAVICSK--QLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRA------I- 137 (535)
Q Consensus 67 n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~--~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~------i- 137 (535)
..+|.......|.+|++|+|++||+++|++|+ +++++|++||+|||+.|.+...++ ++|||++||+ +
T Consensus 54 s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~G----ivIdms~Ln~i~~~~~ii 129 (525)
T PLN02441 54 SKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPGG----VVVDMRSLRGGVRGPPVI 129 (525)
T ss_pred hcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCCe----EEEECCCCCCcCccCceE
Confidence 34677767789999999999999999999997 669999999999999988877554 9999999999 4
Q ss_pred EEcCCCCeEEEeCCCcHHHHHHHHHHcCCceeec-CCCCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcEe
Q 009399 138 SVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFP-AGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKIL 216 (535)
Q Consensus 138 ~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~-~g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i~ 216 (535)
++|.+..+|+|++|++|.++.+++.++| ++.+ .+.+..++|||.+++||.|..+.+||..+|+|++++||+++|+++
T Consensus 130 ~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv 207 (525)
T PLN02441 130 VVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVV 207 (525)
T ss_pred EEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEE
Confidence 7888999999999999999999999986 4433 366778999999999999999999999999999999999999999
Q ss_pred c-ccCCCcchHHHhhcCCCCCcEEEEEEEEEEeecCceEEEEEEEecc
Q 009399 217 D-REAMGEDLFWAIRGGGGASFGIILSWKIKLVPVPETVTVFTVTKTL 263 (535)
Q Consensus 217 ~-~~~~~~dLf~a~rG~~~g~~GiVt~~~~k~~p~~~~~~~~~~~~~~ 263 (535)
+ +..+|+|||||++||+ |+|||||++++|++|+|+.+.++.+.+..
T Consensus 208 ~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~ 254 (525)
T PLN02441 208 TCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSD 254 (525)
T ss_pred EeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCC
Confidence 7 6678999999999998 89999999999999999977776666654
No 2
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=5.8e-33 Score=293.70 Aligned_cols=196 Identities=21% Similarity=0.348 Sum_probs=170.1
Q ss_pred cCCCCCCCCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCe-EEcCCCCeEE
Q 009399 69 RYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI-SVDIESNSAW 147 (535)
Q Consensus 69 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~ 147 (535)
+|.....+.|.+|+.|+|++||+++|++|++++++|+++|+|||+.+....+ + ++|||++||+| ++|.++++|+
T Consensus 6 nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~~-g----vvIdl~~l~~i~~id~~~~~vt 80 (438)
T TIGR01678 6 NWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACTD-G----FLIHLDKMNKVLQFDKEKKQIT 80 (438)
T ss_pred eCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccCC-e----EEEEhhhcCCceEEcCCCCEEE
Confidence 4777777899999999999999999999999999999999999998765543 3 99999999997 9999999999
Q ss_pred EeCCCcHHHHHHHHHHcCCceeec-CCCCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcEec-ccCCCcch
Q 009399 148 VQTGATIGEVYYRIAEKSKIHGFP-AGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD-REAMGEDL 225 (535)
Q Consensus 148 v~aG~~~~~l~~~l~~~g~~l~~~-~g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dL 225 (535)
|+||+++.+|.+.|.++| +.++ .|.++.++|||.+++|+||. +.+||..+|+|+++++|++||++++ +..+++||
T Consensus 81 V~aG~~l~~L~~~L~~~G--l~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dl 157 (438)
T TIGR01678 81 VEAGIRLYQLHEQLDEHG--YSMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADV 157 (438)
T ss_pred EcCCCCHHHHHHHHHHcC--CEecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhH
Confidence 999999999999999997 4555 58889999999999999996 7899999999999999999999997 55678999
Q ss_pred HHHhhcCCCCCcEEEEEEEEEEeecCceEEEEEEEecchhhHHHHHHHHHHHh
Q 009399 226 FWAIRGGGGASFGIILSWKIKLVPVPETVTVFTVTKTLEQGATKILYRWQQVA 278 (535)
Q Consensus 226 f~a~rG~~~g~~GiVt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (535)
||+.+|+. |+|||||++|||++|........ . .....++++.|++..
T Consensus 158 f~a~~~~~-G~lGIIt~vtl~l~p~~~l~~~~--~---~~~~~~~~~~~~~~~ 204 (438)
T TIGR01678 158 FQAARVSL-GCLGIIVTVTIQVVPQFHLQETS--F---VSTLKELLDNWDSHW 204 (438)
T ss_pred HHHHhcCC-CceEeeEEEEEEEEeccceEEEE--e---cCCHHHHHHHHHHHh
Confidence 99999998 89999999999999987644332 1 122456677776654
No 3
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=1.7e-32 Score=295.90 Aligned_cols=183 Identities=20% Similarity=0.243 Sum_probs=160.7
Q ss_pred cCCCCCCCCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEe-CCCCCCCCccccCCCCCeEEEEcCCCCC-eEEcCCCCeE
Q 009399 69 RYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRS-GGHDYEGLSYVSEIETPFIIVDLARLRA-ISVDIESNSA 146 (535)
Q Consensus 69 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~g-gGh~~~g~~~~~~~~~~~ivIdl~~~~~-i~~d~~~~~v 146 (535)
+|+.+..+.|.+|++|+|++||+++|++|+++++||+++| +||++.+.+...+. +++++|||++||+ +++|.++++|
T Consensus 23 nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~-~ggvvIdL~~Ln~il~iD~~~~tV 101 (557)
T TIGR01677 23 AFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGS-DGALLISTKRLNHVVAVDATAMTV 101 (557)
T ss_pred hcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCC-CCEEEEEcccCCCCEEEeCCCCEE
Confidence 7999999999999999999999999999999999999996 59998776554321 1359999999999 5999999999
Q ss_pred EEeCCCcHHHHHHHHHHcCCceeecC-CCCCcccccccccCCCCCCCc-ccCCccccceeEEEEEecCC------cEec-
Q 009399 147 WVQTGATIGEVYYRIAEKSKIHGFPA-GLCTSLGVGGHITGGAYGSMM-RKYGLGADNVLDARIVDANG------KILD- 217 (535)
Q Consensus 147 ~v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~s-~~~G~~~d~v~~~~vV~~~G------~i~~- 217 (535)
+|+||+++.+|.+.|.++| +.++. +.+..++|||.+++|+||... ++||..+|+|++++||++|| ++++
T Consensus 102 tV~AG~~l~~L~~~L~~~G--lal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~ 179 (557)
T TIGR01677 102 TVESGMSLRELIVEAEKAG--LALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRIL 179 (557)
T ss_pred EECCCCcHHHHHHHHHHcC--CEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEe
Confidence 9999999999999999996 55565 455678999999999999865 68999999999999999998 7775
Q ss_pred ccCCCcchHHHhhcCCCCCcEEEEEEEEEEeecCceEE
Q 009399 218 REAMGEDLFWAIRGGGGASFGIILSWKIKLVPVPETVT 255 (535)
Q Consensus 218 ~~~~~~dLf~a~rG~~~g~~GiVt~~~~k~~p~~~~~~ 255 (535)
+..+++|||||+|||+ |+|||||++|||++|.+....
T Consensus 180 s~~~~~dLf~a~rgsl-G~lGVVtevTL~~~P~~~~~~ 216 (557)
T TIGR01677 180 SEGDTPNEFNAAKVSL-GVLGVISQVTLALQPMFKRSV 216 (557)
T ss_pred CCCCCHHHHHhhccCC-CccEeeeEEEEEEEccccceE
Confidence 5567899999999998 899999999999999876433
No 4
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=2.9e-32 Score=288.07 Aligned_cols=175 Identities=21% Similarity=0.367 Sum_probs=154.7
Q ss_pred cCCCCCCCCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCe-EEcCCCCeEE
Q 009399 69 RYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI-SVDIESNSAW 147 (535)
Q Consensus 69 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~ 147 (535)
+|+....+.|.+|+.|+|++||+++|+.|++ +|+++|+|||+.+.+.. ++ ++|||++||+| ++|+++++|+
T Consensus 3 nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~~-~g----~~idl~~l~~i~~~d~~~~~v~ 74 (419)
T TIGR01679 3 NWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLACT-DG----TMISLTGLQGVVDVDQPTGLAT 74 (419)
T ss_pred CCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcccC-CC----EEEEhhHcCCceeecCCCCEEE
Confidence 4777777899999999999999999999974 79999999999876543 33 99999999997 9999999999
Q ss_pred EeCCCcHHHHHHHHHHcCCceeecC-CCCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcEec-ccCCCcch
Q 009399 148 VQTGATIGEVYYRIAEKSKIHGFPA-GLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD-REAMGEDL 225 (535)
Q Consensus 148 v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dL 225 (535)
||||+++.+|.+.|.++|+ .++. |.+..++|||.+++|+||. +..||..+|+|++++||++||++++ ++.+++||
T Consensus 75 v~aG~~l~~l~~~L~~~G~--~l~~~~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dL 151 (419)
T TIGR01679 75 VEAGTRLGALGPQLAQRGL--GLENQGDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEGDDQDM 151 (419)
T ss_pred EcCCCCHHHHHHHHHHcCC--ccccCCCCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHH
Confidence 9999999999999999975 4442 5566689999999999997 4689999999999999999999997 56678999
Q ss_pred HHHhhcCCCCCcEEEEEEEEEEeecCceEE
Q 009399 226 FWAIRGGGGASFGIILSWKIKLVPVPETVT 255 (535)
Q Consensus 226 f~a~rG~~~g~~GiVt~~~~k~~p~~~~~~ 255 (535)
|||+|||+ |+|||||++|||++|.+....
T Consensus 152 f~a~~g~~-G~lGVIt~vtl~~~p~~~~~~ 180 (419)
T TIGR01679 152 YLAARVSL-GALGVISQVTLQTVALFRLRR 180 (419)
T ss_pred HHHHHhCC-CceEEEEEEEEEeecceEeEE
Confidence 99999998 899999999999999876443
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=2.5e-32 Score=293.69 Aligned_cols=186 Identities=30% Similarity=0.387 Sum_probs=164.6
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCe-EEcCCCCeEEEeCCC
Q 009399 74 SMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI-SVDIESNSAWVQTGA 152 (535)
Q Consensus 74 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~v~aG~ 152 (535)
....|.+|+.|+|++||+++|++|+++++||++||+||++.|.+.+.+ +++|||++||+| ++|+++++++|+||+
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~~----gvvl~l~~mn~i~~id~~~~~~~v~aGv 103 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPDG----GVVLDLSRLNRILEIDPEDGTATVQAGV 103 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCCC----cEEEEchhhcchhccCcCCCEEEEcCCc
Confidence 345899999999999999999999999999999999999998887762 399999999998 899999999999999
Q ss_pred cHHHHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcEec--c----cCCCcchH
Q 009399 153 TIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD--R----EAMGEDLF 226 (535)
Q Consensus 153 ~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~--~----~~~~~dLf 226 (535)
++.+|.++|.++|+.+.+.+++...++|||+++++++|..+.+||.+.|+|+++++|++||++++ . +..++||+
T Consensus 104 ~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~ 183 (459)
T COG0277 104 TLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLT 183 (459)
T ss_pred cHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHH
Confidence 99999999999975544444555589999999999999999999999999999999999999996 1 34568999
Q ss_pred HHhhcCCCCCcEEEEEEEEEEeecCceEEEEEEEecch
Q 009399 227 WAIRGGGGASFGIILSWKIKLVPVPETVTVFTVTKTLE 264 (535)
Q Consensus 227 ~a~rG~~~g~~GiVt~~~~k~~p~~~~~~~~~~~~~~~ 264 (535)
+++.|+. |+|||||++++|++|.|+........+...
T Consensus 184 ~l~iGs~-GtlGiit~~tl~l~p~~~~~~~~~~~~~~~ 220 (459)
T COG0277 184 ALFVGSE-GTLGIITEATLKLLPLPETKATAVAGFPSI 220 (459)
T ss_pred HhcccCC-ccceEEEEEEEEeccCCchheEEEEeCCCH
Confidence 9999988 899999999999999988766655555443
No 6
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=5.7e-33 Score=300.18 Aligned_cols=192 Identities=20% Similarity=0.312 Sum_probs=169.8
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCe-EEcCCCCeEEEeCCCcH
Q 009399 76 PKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI-SVDIESNSAWVQTGATI 154 (535)
Q Consensus 76 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~v~aG~~~ 154 (535)
..|.+||+|+|++||+++|++|+++++|++++|||||+.|.+.+.. ++++|||++||+| ++|.++++|+||||+++
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~---ggivIdl~~mn~I~~id~~~~~vtVeaGv~~ 208 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH---GGVCIDMSLMKSVKALHVEDMDVVVEPGIGW 208 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC---CEEEEEccCCCCeEEEeCCCCEEEEeCCcCH
Confidence 4699999999999999999999999999999999999998876543 3599999999998 79999999999999999
Q ss_pred HHHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcEecc------cCCCcchHHH
Q 009399 155 GEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDR------EAMGEDLFWA 228 (535)
Q Consensus 155 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~~------~~~~~dLf~a 228 (535)
.+|+++|.++| +.++...++.++|||.++++++|..+.+||.++|+|++++||++||++++. ...++||+|+
T Consensus 209 ~~L~~~L~~~G--l~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l 286 (555)
T PLN02805 209 LELNEYLEPYG--LFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRL 286 (555)
T ss_pred HHHHHHHHHcC--CEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHH
Confidence 99999999996 566776667889999999999999999999999999999999999999951 1357899999
Q ss_pred hhcCCCCCcEEEEEEEEEEeecCceEEEEEEEecchhhHHHHHHH
Q 009399 229 IRGGGGASFGIILSWKIKLVPVPETVTVFTVTKTLEQGATKILYR 273 (535)
Q Consensus 229 ~rG~~~g~~GiVt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~ 273 (535)
++|+. |+|||||+++||++|.|+....+.+.|+..+++.+++..
T Consensus 287 ~~Gse-GtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~ 330 (555)
T PLN02805 287 VIGSE-GTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIA 330 (555)
T ss_pred hccCC-CceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHH
Confidence 99998 899999999999999999777777777654444454443
No 7
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=1.8e-32 Score=291.67 Aligned_cols=196 Identities=18% Similarity=0.221 Sum_probs=170.6
Q ss_pred cCCCCCCCCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCe-EEcCCCCeEE
Q 009399 69 RYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI-SVDIESNSAW 147 (535)
Q Consensus 69 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~ 147 (535)
+|+.+..+.|..+++|+|++||+++|+.|++++++|+++|+|||+.+.+...+ .+|||++||+| ++|.++++|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~g-----~lldL~~ln~Vl~vD~~~~tVt 127 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSRA-----GMVNLALMDKVLEVDEEKKRVR 127 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCCC-----eEEEhhhCCCCEEEcCCCCEEE
Confidence 68888889999999999999999999999999999999999999998777654 57999999997 9999999999
Q ss_pred EeCCCcHHHHHHHHHHcCCceeecC-CCCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcEec-ccCCCcch
Q 009399 148 VQTGATIGEVYYRIAEKSKIHGFPA-GLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD-REAMGEDL 225 (535)
Q Consensus 148 v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dL 225 (535)
|+||+++.+|.+.|.++| ++++. |.+..++|||.+++|+||.. .+||..+|+|+++++|+++|+++. +..+++||
T Consensus 128 V~AG~~l~~L~~~L~~~G--lal~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdL 204 (541)
T TIGR01676 128 VQAGIRVQQLVDAIKEYG--ITLQNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPEL 204 (541)
T ss_pred EcCCCCHHHHHHHHHHcC--CEeccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHH
Confidence 999999999999999996 55554 88899999999999999985 579999999999999999999996 55678999
Q ss_pred HHHhhcCCCCCcEEEEEEEEEEeecCceEEEEEEEecchhhHHHHHHHHHHHh
Q 009399 226 FWAIRGGGGASFGIILSWKIKLVPVPETVTVFTVTKTLEQGATKILYRWQQVA 278 (535)
Q Consensus 226 f~a~rG~~~g~~GiVt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (535)
|||+|||+ |+|||||++|||++|.+..... ....+ ..++++.+.++.
T Consensus 205 F~Aargsl-G~LGVItevTLr~~Pa~~l~~~-~~~~~----~~e~l~~~~~~~ 251 (541)
T TIGR01676 205 FFLARCGL-GGLGVVAEVTLQCVERQELVEH-TFISN----MKDIKKNHKKFL 251 (541)
T ss_pred HHHHhcCC-CceEeEEEEEEEEEeccceeEE-EEecC----HHHHHHHHHHHH
Confidence 99999998 8999999999999999874332 11122 345566665543
No 8
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=4.6e-32 Score=291.56 Aligned_cols=196 Identities=21% Similarity=0.285 Sum_probs=169.2
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCe-EEcCCCCeEEEeCCC
Q 009399 74 SMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI-SVDIESNSAWVQTGA 152 (535)
Q Consensus 74 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~v~aG~ 152 (535)
....|.+|++|+|++||+++|++|+++++||++||+||++.|.+.+.. ++++|||++||+| ++|+++++|+||||+
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~---~gividl~~ln~I~~id~~~~~v~VeaGv 128 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE---KGVLLVMARFNRILDINPVGRRARVQPGV 128 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC---CcEEEEcccCCCceEEcCCCCEEEEcCCc
Confidence 345899999999999999999999999999999999999987766543 2499999999998 999999999999999
Q ss_pred cHHHHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcEecc-----cCCCcchHH
Q 009399 153 TIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDR-----EAMGEDLFW 227 (535)
Q Consensus 153 ~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~~-----~~~~~dLf~ 227 (535)
++.+|.++|.++|+.+...+++...++|||++++++.|..+.+||.+.|+|++++||++||++++. +..++||+|
T Consensus 129 ~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~ 208 (499)
T PRK11230 129 RNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLA 208 (499)
T ss_pred cHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHh
Confidence 999999999999754333345666789999999999999999999999999999999999999962 234899999
Q ss_pred HhhcCCCCCcEEEEEEEEEEeecCceEEEEEEEecchhhHHHHHHH
Q 009399 228 AIRGGGGASFGIILSWKIKLVPVPETVTVFTVTKTLEQGATKILYR 273 (535)
Q Consensus 228 a~rG~~~g~~GiVt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~ 273 (535)
+++|+. |+|||||++|||++|.|+....+.+.+...+++.+++..
T Consensus 209 l~~Gs~-GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~ 253 (499)
T PRK11230 209 LFTGSE-GMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGD 253 (499)
T ss_pred hhccCC-CccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHH
Confidence 999998 899999999999999998777777777554444444433
No 9
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=1.5e-30 Score=275.30 Aligned_cols=190 Identities=24% Similarity=0.292 Sum_probs=163.6
Q ss_pred EEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCe-EEcCCCCeEEEeCCCcHHHHHH
Q 009399 81 IFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI-SVDIESNSAWVQTGATIGEVYY 159 (535)
Q Consensus 81 vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~~ 159 (535)
||+|+|++||+++|++|+++++||+++|+|||+.|.+.+.+ ++++|||++||+| ++|+++++++||||+++.+|.+
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~---~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~ 77 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE---GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQ 77 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC---CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHH
Confidence 57899999999999999999999999999999987766553 3599999999998 9999999999999999999999
Q ss_pred HHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcEecc------cCCCcchHHHhhcCC
Q 009399 160 RIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDR------EAMGEDLFWAIRGGG 233 (535)
Q Consensus 160 ~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~~------~~~~~dLf~a~rG~~ 233 (535)
+|.++|+.+.+.+++...++|||.+.+++.|..+.+||.+.|+|++++||++||++++. ...++||+|+++|+.
T Consensus 78 ~l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~ 157 (413)
T TIGR00387 78 AVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSE 157 (413)
T ss_pred HHHHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCC
Confidence 99999754333345556789999999999999999999999999999999999999962 345789999999998
Q ss_pred CCCcEEEEEEEEEEeecCceEEEEEEEecchhhHHHHHHHH
Q 009399 234 GASFGIILSWKIKLVPVPETVTVFTVTKTLEQGATKILYRW 274 (535)
Q Consensus 234 ~g~~GiVt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (535)
|+|||||+++||++|.|+....+.+.+...+++.+++..+
T Consensus 158 -GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 158 -GTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred -ccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHH
Confidence 8999999999999999997777667776544444444433
No 10
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=5.8e-30 Score=261.93 Aligned_cols=170 Identities=22% Similarity=0.339 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEeCCC-CCCCCccccCCCCCeEEEEcCCCCCe-EEcCCCCeEEEeCCCcHHHHHHHHHH
Q 009399 86 YESHVQAAVICSKQLGIHLRVRSGGH-DYEGLSYVSEIETPFIIVDLARLRAI-SVDIESNSAWVQTGATIGEVYYRIAE 163 (535)
Q Consensus 86 s~~dv~~~v~~a~~~~~~v~v~ggGh-~~~g~~~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~ 163 (535)
.++||+++|++|+++++||+++|+|| ++.|.. ..+ ++|||++||+| ++|+++.+|+|+||+++.+|.++|.+
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~--~~~----~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~ 76 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRA--LAG----EVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAE 76 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCC--CCC----eEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHH
Confidence 47999999999999999999999997 455552 233 79999999998 99999999999999999999999999
Q ss_pred cCCceeecCC-CCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcEec------ccCCCcchHHHhhcCCCCC
Q 009399 164 KSKIHGFPAG-LCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD------REAMGEDLFWAIRGGGGAS 236 (535)
Q Consensus 164 ~g~~l~~~~g-~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~------~~~~~~dLf~a~rG~~~g~ 236 (535)
+|+.+++.++ .+..++|||.+++|++|..+.+||.++|+|+++++|++||++++ ++..++||||+++|+. |+
T Consensus 77 ~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~-Gt 155 (352)
T PRK11282 77 AGQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL-GT 155 (352)
T ss_pred cCCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC-ch
Confidence 9865555443 34568999999999999999999999999999999999999996 2345789999999998 89
Q ss_pred cEEEEEEEEEEeecCceEEEEEEEec
Q 009399 237 FGIILSWKIKLVPVPETVTVFTVTKT 262 (535)
Q Consensus 237 ~GiVt~~~~k~~p~~~~~~~~~~~~~ 262 (535)
|||||+++||++|.|+....+.+.++
T Consensus 156 LGVitevtlkl~P~p~~~~t~~~~~~ 181 (352)
T PRK11282 156 LGVLLEVSLKVLPRPRAELTLRLEMD 181 (352)
T ss_pred hhhheEEEEEEEecCceEEEEEEecC
Confidence 99999999999999987655555543
No 11
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=2.8e-29 Score=252.37 Aligned_cols=174 Identities=22% Similarity=0.341 Sum_probs=150.8
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHhc--CCeEEEEeCCCCCCCCccccCCCCCeEEEEcC---CCCCe-EEcCCCCeEE
Q 009399 74 SMPKPEFIFTPLYESHVQAAVICSKQL--GIHLRVRSGGHDYEGLSYVSEIETPFIIVDLA---RLRAI-SVDIESNSAW 147 (535)
Q Consensus 74 ~~~~p~~vv~P~s~~dv~~~v~~a~~~--~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~---~~~~i-~~d~~~~~v~ 147 (535)
....|.+|..|+|+|||++++|.|+.. ++||.+||+|||..|.+.... +|+||.|. .|+++ .+..++..|.
T Consensus 60 ~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~---~GvvV~m~~~~~~~~~~~~~~~~~yvd 136 (505)
T KOG1231|consen 60 TQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR---GGVVVCMDSSLLMKDVPVLVVDDLYVD 136 (505)
T ss_pred CCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC---CCeEEEEehhhccCCCceeecccceEE
Confidence 345899999999999999999999999 999999999999999988744 24676664 46666 5677789999
Q ss_pred EeCCCcHHHHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcEec-ccCCCcchH
Q 009399 148 VQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD-REAMGEDLF 226 (535)
Q Consensus 148 v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dLf 226 (535)
|.||..|-+|.+++.++|+.-..+.- +...+|||+++.+|.|....+||...+||++++||+++|++++ +...|++||
T Consensus 137 V~~g~~Widll~~t~e~GL~p~swtD-yl~ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~lf 215 (505)
T KOG1231|consen 137 VSAGTLWIDLLDYTLEYGLSPFSWTD-YLPLTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNLF 215 (505)
T ss_pred eeCChhHHHHHHHHHHcCCCccCcCC-ccceeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCceee
Confidence 99999999999999999741122222 2238899999999999999999999999999999999999996 667899999
Q ss_pred HHhhcCCCCCcEEEEEEEEEEeecCc
Q 009399 227 WAIRGGGGASFGIILSWKIKLVPVPE 252 (535)
Q Consensus 227 ~a~rG~~~g~~GiVt~~~~k~~p~~~ 252 (535)
.++.||. |.|||||+++++++|+|+
T Consensus 216 ~~vlGgl-GqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 216 FLVLGGL-GQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeeeccC-cceeeEEEEEEEeccCCc
Confidence 9999998 899999999999999994
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=1.6e-28 Score=263.47 Aligned_cols=177 Identities=20% Similarity=0.275 Sum_probs=160.1
Q ss_pred cCCCCCCCCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCe-EEcCCCCeEE
Q 009399 69 RYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI-SVDIESNSAW 147 (535)
Q Consensus 69 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~ 147 (535)
+|+....+.|.+++.|+|++||+++|++|+++++||+++|+|||+.+.....+ .+|||++||+| ++|.++++|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td~-----glIdL~~l~~Il~vD~e~~~Vt 162 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSRE-----GMVNLALMDKVLEVDKEKKRVT 162 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCCC-----EEEECcCCCCcEEEeCCCCEEE
Confidence 69988899999999999999999999999999999999999999988776554 57899999997 9999999999
Q ss_pred EeCCCcHHHHHHHHHHcCCceeecC-CCCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcEec-ccCCCcch
Q 009399 148 VQTGATIGEVYYRIAEKSKIHGFPA-GLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD-REAMGEDL 225 (535)
Q Consensus 148 v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dL 225 (535)
|+||+++.+|.+.|.++| ++++. |.....+|||.+++|+||.. ..+|..+|+|+++++|+++|++++ +..+++||
T Consensus 163 V~AG~~l~~L~~~L~~~G--Lal~n~g~I~~~TIGGaIstGtHGtG-~~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdL 239 (573)
T PLN02465 163 VQAGARVQQVVEALRPHG--LTLQNYASIREQQIGGFIQVGAHGTG-ARIPPIDEQVVSMKLVTPAKGTIELSKEDDPEL 239 (573)
T ss_pred EccCCCHHHHHHHHHHcC--CEeccCCCCCCeeecchhhCCCCCcC-CCcCcHhheEEEEEEEECCCCEEEECCCCCHHH
Confidence 999999999999999997 45554 66677899999999999985 468999999999999999999996 55678999
Q ss_pred HHHhhcCCCCCcEEEEEEEEEEeecCceE
Q 009399 226 FWAIRGGGGASFGIILSWKIKLVPVPETV 254 (535)
Q Consensus 226 f~a~rG~~~g~~GiVt~~~~k~~p~~~~~ 254 (535)
||+.|++. |.|||||++|||++|.+...
T Consensus 240 F~aar~gl-G~lGVIteVTLql~P~~~L~ 267 (573)
T PLN02465 240 FRLARCGL-GGLGVVAEVTLQCVPAHRLV 267 (573)
T ss_pred HhHhhccC-CCCcEEEEEEEEEEecCceE
Confidence 99999998 89999999999999998743
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=6e-27 Score=210.85 Aligned_cols=136 Identities=35% Similarity=0.540 Sum_probs=124.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCC-eEEcCCCCeEEEeCCCcHHH
Q 009399 78 PEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRA-ISVDIESNSAWVQTGATIGE 156 (535)
Q Consensus 78 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~-i~~d~~~~~v~v~aG~~~~~ 156 (535)
|.+|++|++++||+++|++|+++++|++++|+||++.+.+...+ +++|||++|++ +++|++.++++|+||+++.|
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~~----~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~ 76 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDEG----GIVIDMSRLNKIIEIDPENGTVTVGAGVTWGD 76 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSSTT----EEEEECTTCGCEEEEETTTTEEEEETTSBHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccCC----cEEEeeccccccccccccceeEEEeccccchh
Confidence 78999999999999999999999999999999999987766333 49999999999 59999999999999999999
Q ss_pred HHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcEec
Q 009399 157 VYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD 217 (535)
Q Consensus 157 l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~ 217 (535)
|+++|.++|+.+.+.++.+..++|||++.+|++|..++.||..+|+|+++++|++||++++
T Consensus 77 l~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 77 LYEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 9999999975444447888889999999999999999999999999999999999999985
No 14
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.92 E-value=1.3e-24 Score=228.10 Aligned_cols=197 Identities=14% Similarity=0.147 Sum_probs=163.9
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCC--CCCeEEEEcCCCCCe-EEcCCCCeEEEeCC
Q 009399 75 MPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEI--ETPFIIVDLARLRAI-SVDIESNSAWVQTG 151 (535)
Q Consensus 75 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~--~~~~ivIdl~~~~~i-~~d~~~~~v~v~aG 151 (535)
...|.+||+|.|++||+++|+.|+++++||+++|||+++.|.+.+.++ +.++|+|||.+||+| ++| ++++++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 357999999999999999999999999999999999999999887642 113699999999998 888 5679999999
Q ss_pred CcHHHHHHHHHHcCCceeecCCC-CCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcE-------ec--c---
Q 009399 152 ATIGEVYYRIAEKSKIHGFPAGL-CTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKI-------LD--R--- 218 (535)
Q Consensus 152 ~~~~~l~~~l~~~g~~l~~~~g~-~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i-------~~--~--- 218 (535)
+++.+|.++|.++|+......|+ |-.++|||.++.++.|....+||...++++. ++|+++|++ +. .
T Consensus 115 Vtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e 193 (564)
T PRK11183 115 TTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPE 193 (564)
T ss_pred CcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHH
Confidence 99999999999997432221233 3356788999999999999999999999999 999999999 32 1
Q ss_pred ------cCCCc----------------------------------chHHHh--hcCCCCCcEEEEEEEEEEeecCceEEE
Q 009399 219 ------EAMGE----------------------------------DLFWAI--RGGGGASFGIILSWKIKLVPVPETVTV 256 (535)
Q Consensus 219 ------~~~~~----------------------------------dLf~a~--rG~~~g~~GiVt~~~~k~~p~~~~~~~ 256 (535)
+..+. |+...+ .|+. |.+||| +++++++|+|+....
T Consensus 194 ~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGse-GkLgV~-avrLdtfp~p~~~~v 271 (564)
T PRK11183 194 EILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCA-GKLAVF-AVRLDTFPAEKNTQV 271 (564)
T ss_pred HHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCC-ceEEEE-EEEeccccCCCcceE
Confidence 11234 888888 8888 899999 999999999998888
Q ss_pred EEEEecchhhHHHHHHHHH
Q 009399 257 FTVTKTLEQGATKILYRWQ 275 (535)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~ 275 (535)
|.+.++..+.+.++...+.
T Consensus 272 f~ig~n~~~~~~~~rr~il 290 (564)
T PRK11183 272 FYIGTNDPAVLTEIRRHIL 290 (564)
T ss_pred EEEeCCCHHHHHHHHHHHH
Confidence 8888877666666655543
No 15
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.91 E-value=9.7e-24 Score=212.63 Aligned_cols=183 Identities=22% Similarity=0.305 Sum_probs=162.7
Q ss_pred CCCCCCCCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCe-EEcCCCCeEEE
Q 009399 70 YLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI-SVDIESNSAWV 148 (535)
Q Consensus 70 ~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~v 148 (535)
|+.+..++.+-|-+|+|++|+.++|+.|+++|.++++.|.|||..+..+.++ .+|+|++||++ ++|++.+++||
T Consensus 42 fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctdg-----~lisl~~lnkVv~~dpe~~tvTV 116 (518)
T KOG4730|consen 42 FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTDG-----LLISLDKLNKVVEFDPELKTVTV 116 (518)
T ss_pred cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceeccc-----cEEEhhhhccceeeCchhceEEe
Confidence 6667778899999999999999999999999999999999999999888765 79999999996 99999999999
Q ss_pred eCCCcHHHHHHHHHHcCCceeecC-CCCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcEec-ccCCCcchH
Q 009399 149 QTGATIGEVYYRIAEKSKIHGFPA-GLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD-REAMGEDLF 226 (535)
Q Consensus 149 ~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dLf 226 (535)
++|+++.||++++.+.| +.++. +....++|||.+..|+||....-|+......+-..++.++|.++. ++..+||+|
T Consensus 117 ~aGirlrQLie~~~~~G--lsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F 194 (518)
T KOG4730|consen 117 QAGIRLRQLIEELAKLG--LSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELF 194 (518)
T ss_pred ccCcCHHHHHHHHHhcC--ccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHH
Confidence 99999999999999985 66676 777889999999999999987767777777777777788998775 666789999
Q ss_pred HHhhcCCCCCcEEEEEEEEEEeecCceEEEEEEE
Q 009399 227 WAIRGGGGASFGIILSWKIKLVPVPETVTVFTVT 260 (535)
Q Consensus 227 ~a~rG~~~g~~GiVt~~~~k~~p~~~~~~~~~~~ 260 (535)
.|.+.+. |.+|||.++||++.|..+...++.+.
T Consensus 195 ~AAkvSL-G~LGVIs~VTl~~vp~Fk~s~t~~v~ 227 (518)
T KOG4730|consen 195 NAAKVSL-GVLGVISQVTLSVVPAFKRSLTYVVT 227 (518)
T ss_pred hhhhhcc-cceeEEEEEEEEEEecceeeeEEEEe
Confidence 9999999 89999999999999998877666554
No 16
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=5e-24 Score=215.55 Aligned_cols=162 Identities=23% Similarity=0.244 Sum_probs=138.6
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCC-CCCeEEcCCCCeEEEeCCCcH
Q 009399 76 PKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLAR-LRAISVDIESNSAWVQTGATI 154 (535)
Q Consensus 76 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~-~~~i~~d~~~~~v~v~aG~~~ 154 (535)
..|.+++.|+|++||+++|++|+++++|+.++|+|||+...+.+.++ ++|||++ |+.|++ ++.+++|+||+++
T Consensus 29 g~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~g----vvI~l~~~l~~i~~--~~~~v~v~aG~~~ 102 (298)
T PRK13905 29 GPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIRG----VVIRLGKGLNEIEV--EGNRITAGAGAPL 102 (298)
T ss_pred ceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcce----EEEEecCCcceEEe--cCCEEEEECCCcH
Confidence 47999999999999999999999999999999999997654433333 9999998 999854 4579999999999
Q ss_pred HHHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCC-ccccceeEEEEEecCCcEecccCCCcchHHHhhcCC
Q 009399 155 GEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYG-LGADNVLDARIVDANGKILDREAMGEDLFWAIRGGG 233 (535)
Q Consensus 155 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G-~~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~ 233 (535)
.+|.++|.++|+ .|.+..+|++| ..||+.+++.+.|| .++|+|+++++|++||++++.. +.|++|++|++.
T Consensus 103 ~~L~~~l~~~Gl-----~gle~~~gipG-TVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~s~ 174 (298)
T PRK13905 103 IKLARFAAEAGL-----SGLEFAAGIPG-TVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRHSA 174 (298)
T ss_pred HHHHHHHHHcCC-----CcchhccCCCc-chhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCcccc
Confidence 999999999973 46677778888 47788888888898 7999999999999999999742 459999999987
Q ss_pred CC-CcEEEEEEEEEEeecC
Q 009399 234 GA-SFGIILSWKIKLVPVP 251 (535)
Q Consensus 234 ~g-~~GiVt~~~~k~~p~~ 251 (535)
.+ .+||||+++||++|..
T Consensus 175 ~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 175 LQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred CCCCCEEEEEEEEEEcCCC
Confidence 44 3899999999999863
No 17
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.89 E-value=2.6e-23 Score=204.58 Aligned_cols=188 Identities=22% Similarity=0.292 Sum_probs=172.9
Q ss_pred cccccCCCCCCCCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCe-EEcCCC
Q 009399 65 AQNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI-SVDIES 143 (535)
Q Consensus 65 ~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i-~~d~~~ 143 (535)
.+|..|....+.....|.+|+|+++|++++++|+++++.|++.||-+...|.|.+.-+ .|||+|.+||+| ++|+-.
T Consensus 77 ~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvfD---EiVlsl~~mNKi~sfDevs 153 (511)
T KOG1232|consen 77 NFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVFD---EIVLSLGLMNKILSFDEVS 153 (511)
T ss_pred hhhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccchH---HHhhhhhhhcccccccccc
Confidence 5788898888889999999999999999999999999999999999999988888764 499999999998 899999
Q ss_pred CeEEEeCCCcHHHHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcEec------
Q 009399 144 NSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD------ 217 (535)
Q Consensus 144 ~~v~v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~------ 217 (535)
+++++++|+.+.++.++|+++|..+++..|.-.++-|||.+++++.|..--+||....+|+++|+|+|+|+++.
T Consensus 154 Gil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slR 233 (511)
T KOG1232|consen 154 GILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLR 233 (511)
T ss_pred ceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhc
Confidence 99999999999999999999987666667888889999999999999999999999999999999999999994
Q ss_pred ccCCCcchHHHhhcCCCCCcEEEEEEEEEEeecCceEEE
Q 009399 218 REAMGEDLFWAIRGGGGASFGIILSWKIKLVPVPETVTV 256 (535)
Q Consensus 218 ~~~~~~dLf~a~rG~~~g~~GiVt~~~~k~~p~~~~~~~ 256 (535)
.+..+.|+-+.+.|+. |++||||++++-+.|.|+.+..
T Consensus 234 KDNTgydlkhLFIGSE-GtlGVvT~vSil~~~kpksvn~ 271 (511)
T KOG1232|consen 234 KDNTGYDLKHLFIGSE-GTLGVVTKVSILAPPKPKSVNV 271 (511)
T ss_pred ccCccccchhheecCC-ceeeEEeeEEEeecCCCcceeE
Confidence 4557899999999998 8999999999999999986544
No 18
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.85 E-value=1.1e-20 Score=186.34 Aligned_cols=190 Identities=21% Similarity=0.247 Sum_probs=159.5
Q ss_pred CCCCCCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCC-CCccccCCCCC-eEEEEcCCCCCe-EEcCCCCeEEE
Q 009399 72 TPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYE-GLSYVSEIETP-FIIVDLARLRAI-SVDIESNSAWV 148 (535)
Q Consensus 72 ~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~-g~~~~~~~~~~-~ivIdl~~~~~i-~~d~~~~~v~v 148 (535)
...++.|+.||.|+..+||.++|+.|.+|++-+.+.|||+|.. +..++.+. +. -+.+||+.||+| -+|.++-|+.+
T Consensus 155 gkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E-~R~iislDtsqmnriLWidreNLT~~~ 233 (613)
T KOG1233|consen 155 GKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETE-KRAIISLDTSQMNRILWIDRENLTCRA 233 (613)
T ss_pred CccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCccc-ceeEEEecHHhhhheeEeccccceEEE
Confidence 3455699999999999999999999999999999999999975 45555543 23 355888899998 89999999999
Q ss_pred eCCCcHHHHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcEec-----ccCCCc
Q 009399 149 QTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD-----REAMGE 223 (535)
Q Consensus 149 ~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~-----~~~~~~ 223 (535)
|+|+.-.+|.+.|.+.|..-...+.+..-.++||++++.+.|+.-..||.+-|-|+.+++|+|.|.+.. .-+.+|
T Consensus 234 eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~GP 313 (613)
T KOG1233|consen 234 EAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSGP 313 (613)
T ss_pred ecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCCC
Confidence 999999999999999873211122333346899999999999999999999999999999999999884 234689
Q ss_pred chHHHhhcCCCCCcEEEEEEEEEEeecCceEEEEEEEecc
Q 009399 224 DLFWAIRGGGGASFGIILSWKIKLVPVPETVTVFTVTKTL 263 (535)
Q Consensus 224 dLf~a~rG~~~g~~GiVt~~~~k~~p~~~~~~~~~~~~~~ 263 (535)
|+..-+.|+. |++||||++++|+.|.|+....-++.|+.
T Consensus 314 Dihh~IlGSE-GTLGVitEvtiKirPiPe~~ryGS~aFPN 352 (613)
T KOG1233|consen 314 DIHHIILGSE-GTLGVITEVTIKIRPIPEVKRYGSFAFPN 352 (613)
T ss_pred CcceEEeccC-cceeEEEEEEEEEeechhhhhcCccccCc
Confidence 9999999988 89999999999999999876655566654
No 19
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=8.1e-21 Score=191.92 Aligned_cols=162 Identities=20% Similarity=0.191 Sum_probs=132.6
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCeEEcCCCCeEEEeCCCcH
Q 009399 75 MPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGATI 154 (535)
Q Consensus 75 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i~~d~~~~~v~v~aG~~~ 154 (535)
...|.+++.|+|++||++++++|+++++|+.++|+|||+...+.+.+ +++|+|++|++|+++ +.+++|+||+.+
T Consensus 34 gg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~----GvvI~l~~l~~i~~~--~~~v~v~aG~~~ 107 (305)
T PRK12436 34 GGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIR----GITVSLIHITGVTVT--GTTIVAQCGAAI 107 (305)
T ss_pred CceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCee----EEEEEeCCcCcEEEe--CCEEEEEeCCcH
Confidence 34799999999999999999999999999999999999874433333 399999889998775 468999999999
Q ss_pred HHHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCC-ccccceeEEEEEecCCcEecccCCCcchHHHhhcCC
Q 009399 155 GEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYG-LGADNVLDARIVDANGKILDREAMGEDLFWAIRGGG 233 (535)
Q Consensus 155 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G-~~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~ 233 (535)
.+|.+++.++|+ .|.+..+|++|. .||+..++.+.|| ...|.+.+++|+++||++++.. +.|+.|+||.+.
T Consensus 108 ~~L~~~~~~~gl-----~Gle~~~giPGt-VGGav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~--~~e~~f~YR~s~ 179 (305)
T PRK12436 108 IDVSRIALDHNL-----TGLEFACGIPGS-VGGALYMNAGAYGGEISFVLTEAVVMTGDGELRTLT--KEAFEFGYRKSV 179 (305)
T ss_pred HHHHHHHHHcCC-----ccchhhcCCccc-hhHHHHhcCccchhehheeeeEEEEEeCCCCEEEEE--HHHhcCcCCCCc
Confidence 999999999973 355555667775 5566666777788 5567888999999999999743 368999999875
Q ss_pred CC-CcEEEEEEEEEEeec
Q 009399 234 GA-SFGIILSWKIKLVPV 250 (535)
Q Consensus 234 ~g-~~GiVt~~~~k~~p~ 250 (535)
.. ...||++++||+.+.
T Consensus 180 ~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 180 FANNHYIILEARFELEEG 197 (305)
T ss_pred CCCCCEEEEEEEEEEcCC
Confidence 32 357999999999874
No 20
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.84 E-value=9.2e-21 Score=189.95 Aligned_cols=161 Identities=20% Similarity=0.168 Sum_probs=139.5
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCeEEcCCCCeEEEeCCCcHH
Q 009399 76 PKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIG 155 (535)
Q Consensus 76 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i~~d~~~~~v~v~aG~~~~ 155 (535)
..|.++++|+|++||+++|++|+++++|+.++|+|||+...+.+.++ ++|++++|+++.+++ +.+++|+||+.+.
T Consensus 11 g~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~~g----vvi~l~~~~~~~~~~-~~~v~v~aG~~~~ 85 (284)
T TIGR00179 11 GNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGRGG----VIINLGKGIDIEDDE-GEYVHVGGGENWH 85 (284)
T ss_pred ceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCcCe----EEEECCCCceEEEec-CCEEEEEcCCcHH
Confidence 47999999999999999999999999999999999998876655544 999999999887665 5799999999999
Q ss_pred HHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCcccc-ceeEEEEEecCCcEecccCCCcchHHHhhcCCC
Q 009399 156 EVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGAD-NVLDARIVDANGKILDREAMGEDLFWAIRGGGG 234 (535)
Q Consensus 156 ~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~~~d-~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~ 234 (535)
+|.+++.++|+ .|.+..+|++|. .||+.+++++.||..++ .|+++++|++||++++.. +.|+.|+||.+..
T Consensus 86 ~l~~~~~~~Gl-----~GlE~l~giPGt-vGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~--~~~~~f~YR~S~f 157 (284)
T TIGR00179 86 KLVKYALKNGL-----SGLEFLAGIPGT-VGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLT--NEQLGFGYRTSIF 157 (284)
T ss_pred HHHHHHHHCCC-----cccccCCCCCch-HHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEE--HHHccccCCcccc
Confidence 99999999973 599999999995 89999999999999886 679999999999998643 3699999997653
Q ss_pred CC-c-EEEEEEEEEEee
Q 009399 235 AS-F-GIILSWKIKLVP 249 (535)
Q Consensus 235 g~-~-GiVt~~~~k~~p 249 (535)
.. . .||++++|++.+
T Consensus 158 ~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 158 QHKYVGLVLKAEFQLTL 174 (284)
T ss_pred CCCCcEEEEEEEEEecc
Confidence 22 2 699999999844
No 21
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=1.6e-20 Score=189.40 Aligned_cols=162 Identities=20% Similarity=0.203 Sum_probs=133.2
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCC-CCCeEEcCCCCeEEEeCCCc
Q 009399 75 MPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLAR-LRAISVDIESNSAWVQTGAT 153 (535)
Q Consensus 75 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~-~~~i~~d~~~~~v~v~aG~~ 153 (535)
...|.+++.|+|++||++++++|+++++|+.++|+|||....+.+.+ +++|+|++ ++.+.++ +.+++|+||+.
T Consensus 33 gg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~----gvVI~l~~~~~~i~~~--~~~v~v~AG~~ 106 (302)
T PRK14652 33 GGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVR----GVVLRLPQDFPGESTD--GGRLVLGAGAP 106 (302)
T ss_pred CCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEe----eEEEEecCCcceEEec--CCEEEEECCCc
Confidence 35899999999999999999999999999999999999864333333 39999976 5556543 46999999999
Q ss_pred HHHHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcc-cCCccccceeEEEEEecCCcEecccCCCcchHHHhhcC
Q 009399 154 IGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMR-KYGLGADNVLDARIVDANGKILDREAMGEDLFWAIRGG 232 (535)
Q Consensus 154 ~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~-~~G~~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~ 232 (535)
+.+|.+++.++| + .|.++.+||+| +.||+..++++ +||.+.|+|+++++|+++| +++. ...|+.|+||++
T Consensus 107 ~~~L~~~~~~~G--L---~GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~--~~~e~~f~YR~s 177 (302)
T PRK14652 107 ISRLPARAHAHG--L---VGMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFV--PAAALGYAYRTC 177 (302)
T ss_pred HHHHHHHHHHcC--C---cccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEe--ehhhcCccccee
Confidence 999999999997 2 38899999999 47777777764 7788999999999999999 4432 236999999986
Q ss_pred CCCCcEEEEEEEEEEeecC
Q 009399 233 GGASFGIILSWKIKLVPVP 251 (535)
Q Consensus 233 ~~g~~GiVt~~~~k~~p~~ 251 (535)
..+..||||+++||++|..
T Consensus 178 ~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 178 RLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred ccCCCeEEEEEEEEEecCC
Confidence 5333489999999999843
No 22
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.83 E-value=1.8e-20 Score=189.33 Aligned_cols=160 Identities=23% Similarity=0.219 Sum_probs=136.6
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCeEEcCCCCeEEEeCCCcHH
Q 009399 76 PKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIG 155 (535)
Q Consensus 76 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i~~d~~~~~v~v~aG~~~~ 155 (535)
..+.+++.|+|++||+++|++|+++++|+.++|+|||....+.+.++ ++|+|++|++|+++ +.+++|+||+.+.
T Consensus 35 G~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~~G----vvI~l~~l~~i~~~--~~~v~v~aG~~~~ 108 (307)
T PRK13906 35 GNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIRG----IVISLLSLDHIEVS--DDAIIAGSGAAII 108 (307)
T ss_pred ceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCcce----EEEEecCccceEEe--CCEEEEECCCcHH
Confidence 47899999999999999999999999999999999998754443433 99999889999875 3589999999999
Q ss_pred HHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCC-ccccceeEEEEEecCCcEecccCCCcchHHHhhcCCC
Q 009399 156 EVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYG-LGADNVLDARIVDANGKILDREAMGEDLFWAIRGGGG 234 (535)
Q Consensus 156 ~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G-~~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~ 234 (535)
+|.+++.++| ..|.+..+||+| ..||+..++++.|| .++|+|+++++|+++|++++.. ..|+.|+||.+..
T Consensus 109 ~l~~~~~~~G-----l~GlE~~~gIPG-tVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~--~~e~~f~YR~S~~ 180 (307)
T PRK13906 109 DVSRVARDYA-----LTGLEFACGIPG-SIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLT--TKELELDYRNSII 180 (307)
T ss_pred HHHHHHHHcC-----CccchhhcCCCc-cHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEE--HHHccCcCCcccC
Confidence 9999999997 357788889999 58888888888995 8899999999999999999743 3589999997653
Q ss_pred CC-cEEEEEEEEEEee
Q 009399 235 AS-FGIILSWKIKLVP 249 (535)
Q Consensus 235 g~-~GiVt~~~~k~~p 249 (535)
.. --||++++|++.|
T Consensus 181 ~~~~~ii~~~~~~l~~ 196 (307)
T PRK13906 181 QKEHLVVLEAAFTLAP 196 (307)
T ss_pred CCCCEEEEEEEEEECC
Confidence 22 2499999999986
No 23
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.81 E-value=1.5e-19 Score=185.49 Aligned_cols=162 Identities=22% Similarity=0.226 Sum_probs=133.8
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCeEEcCCCCeEEEeCCCcHH
Q 009399 76 PKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIG 155 (535)
Q Consensus 76 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i~~d~~~~~v~v~aG~~~~ 155 (535)
..+.+++.|+|++||++++++|+++++|+.++|+|||+...+.+.++ +||+++ +++++++.++.+++|+||+.|.
T Consensus 31 g~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~G----vVI~l~-~~~i~i~~~~~~v~vgAG~~~~ 105 (363)
T PRK13903 31 GPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFDG----TVVRVA-TRGVTVDCGGGLVRAEAGAVWD 105 (363)
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCccE----EEEEeC-CCcEEEeCCCCEEEEEcCCCHH
Confidence 47999999999999999999999999999999999998755444443 999997 5888887666799999999999
Q ss_pred HHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCc-cccceeEEEEEecC-CcEecccCCCcchHHHhhcCC
Q 009399 156 EVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGL-GADNVLDARIVDAN-GKILDREAMGEDLFWAIRGGG 233 (535)
Q Consensus 156 ~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~-~~d~v~~~~vV~~~-G~i~~~~~~~~dLf~a~rG~~ 233 (535)
+|.+++.++| ..|.+..+||+|.+ ||+.-++.+.||. +.|.|.++++++.+ |++++.. +.||+|+||++.
T Consensus 106 ~l~~~a~~~G-----L~GlE~laGIPGTV-GGAv~mNaGayG~ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~S~ 177 (363)
T PRK13903 106 DVVARTVEAG-----LGGLECLSGIPGSA-GATPVQNVGAYGQEVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRTSV 177 (363)
T ss_pred HHHHHHHHcC-----CccccccCCCCcch-hhHhhcCCChhHHHHhhhEeEEEEEECCCCEEEEEE--HHHcceeccccc
Confidence 9999999997 35677777777774 4444555666665 58999999999965 9999743 579999999863
Q ss_pred C--CCcEEEEEEEEEEeec
Q 009399 234 G--ASFGIILSWKIKLVPV 250 (535)
Q Consensus 234 ~--g~~GiVt~~~~k~~p~ 250 (535)
. ++++|||+++||+.|.
T Consensus 178 f~~~~~~IIl~a~f~L~~~ 196 (363)
T PRK13903 178 LKHSDRAVVLEVEFQLDPS 196 (363)
T ss_pred cCCCCCEEEEEEEEEEEcC
Confidence 2 2478999999999986
No 24
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.80 E-value=6.3e-19 Score=177.35 Aligned_cols=164 Identities=18% Similarity=0.202 Sum_probs=137.6
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCC-CeEEcCCCCeEEEeCCCcH
Q 009399 76 PKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLR-AISVDIESNSAWVQTGATI 154 (535)
Q Consensus 76 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~-~i~~d~~~~~v~v~aG~~~ 154 (535)
....+++.|++++|+++++++|+++++|+.++|+|||+...+.+.++ +||++++++ ++..+.+..+++|+||+.|
T Consensus 19 g~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~G----vVI~l~~~~~~i~~~~~~~~v~v~AG~~~ 94 (295)
T PRK14649 19 GPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFDG----LVARYRGQRWELHEHGDTAEVWVEAGAPM 94 (295)
T ss_pred ceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcCe----EEEEecCCCcEEEEeCCcEEEEEEcCCcH
Confidence 47788999999999999999999999999999999999887766665 999998754 6666655558999999999
Q ss_pred HHHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcEecccCCCcchHHHhhcCCC
Q 009399 155 GEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDREAMGEDLFWAIRGGGG 234 (535)
Q Consensus 155 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~ 234 (535)
.+|.+++.++| ..|.++.+||+|.+.|..++..+..++.++|.|+++++++.+|++++.. ..||+|+||.+..
T Consensus 95 ~~l~~~~~~~G-----L~GlE~l~GIPGTvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~--~~el~f~YR~S~~ 167 (295)
T PRK14649 95 AGTARRLAAQG-----WAGLEWAEGLPGTIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWS--VHDFAYGYRTSVL 167 (295)
T ss_pred HHHHHHHHHcC-----CccccccCCCCcchhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEe--HHHcCcccceeec
Confidence 99999999997 4678899999996555577777777778899999999999999998743 3599999997643
Q ss_pred CC---------cEEEEEEEEEEeec
Q 009399 235 AS---------FGIILSWKIKLVPV 250 (535)
Q Consensus 235 g~---------~GiVt~~~~k~~p~ 250 (535)
-. --||++++|++.|.
T Consensus 168 ~~~~~~~~~~~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 168 KQLRADGITWRPPLVLAARFRLHRD 192 (295)
T ss_pred ccccccccccCCeEEEEEEEEECCC
Confidence 22 12899999998864
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.70 E-value=7.3e-17 Score=161.86 Aligned_cols=159 Identities=20% Similarity=0.261 Sum_probs=136.0
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCeEEcCCCCeEEEeCCCcHH
Q 009399 76 PKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIG 155 (535)
Q Consensus 76 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i~~d~~~~~v~v~aG~~~~ 155 (535)
....+++.|+|++|+++++++|++ ++|+.+.|+|+|....+.+.++ +||.+++|++|+++ +..++|+||+.+.
T Consensus 32 G~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~g----vVI~l~~~~~i~i~--~~~v~v~AG~~l~ 104 (297)
T PRK14653 32 GPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMDF----VVVSTERLDDIFVD--NDKIICESGLSLK 104 (297)
T ss_pred cEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCccE----EEEEeCCcCceEEe--CCEEEEeCCCcHH
Confidence 367789999999999999999999 9999999999999877766655 99999789999876 3589999999999
Q ss_pred HHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCc-cccceeEEEEEecCCcEecccCCCcchHHHhhcCCC
Q 009399 156 EVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGL-GADNVLDARIVDANGKILDREAMGEDLFWAIRGGGG 234 (535)
Q Consensus 156 ~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~-~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~ 234 (535)
+|.+++.++| ..|.+..+||+|. .||+.-++.+.||. +.|.|+++++++ +|++++.. ..|+-|.||.+..
T Consensus 105 ~L~~~~~~~G-----L~GlE~l~gIPGT-VGGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~--~~e~~f~YR~S~~ 175 (297)
T PRK14653 105 KLCLVAAKNG-----LSGFENAYGIPGS-VGGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLG--KNEIKFSYRNSIF 175 (297)
T ss_pred HHHHHHHHCC-----CcchhhhcCCchh-HHHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEc--hhhccccCccccC
Confidence 9999999997 4788888999998 77778888888998 899999999999 78877642 3489999997653
Q ss_pred CC--cEEEEEEEEEEeec
Q 009399 235 AS--FGIILSWKIKLVPV 250 (535)
Q Consensus 235 g~--~GiVt~~~~k~~p~ 250 (535)
.. --||++++||+.|.
T Consensus 176 ~~~~~~iI~~a~f~L~~~ 193 (297)
T PRK14653 176 KEEKDLIILRVTFKLKKG 193 (297)
T ss_pred CCCCcEEEEEEEEEEecC
Confidence 32 12999999999875
No 26
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.67 E-value=3.3e-17 Score=117.99 Aligned_cols=47 Identities=53% Similarity=0.921 Sum_probs=35.0
Q ss_pred ccccccCcccCCCCCCCchhhhhhhhhhhhhhhhHHHHHHhHhhcCCCCCcccCCCCC
Q 009399 471 AYVNYRDLDLGMNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIP 528 (535)
Q Consensus 471 ~YvNy~d~dl~~~~~~~~~~~~~~~~~~~yyG~n~~RL~~IK~kyDP~~vF~~~q~i~ 528 (535)
+|+||+|.+++ ..+|.+.|||+||+||++||++|||+|||+++|+||
T Consensus 1 aY~Ny~d~~~~-----------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP-----------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG-----------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc-----------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 69999999965 137999999999999999999999999999999996
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=1.4e-15 Score=149.79 Aligned_cols=164 Identities=20% Similarity=0.199 Sum_probs=141.2
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCeEEcCCCCeEEEeCCCcH
Q 009399 75 MPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGATI 154 (535)
Q Consensus 75 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i~~d~~~~~v~v~aG~~~ 154 (535)
......++.|++++|+.++++++.+.++|+.+.|+|+|....+.+.++ ++|.+.+++.++++.+...++|++|+.|
T Consensus 18 Gg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~g----vvi~~~~~~~~~~~~~~~~i~a~aG~~~ 93 (291)
T COG0812 18 GGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIGG----VVIKLGKLNFIEIEGDDGLIEAGAGAPW 93 (291)
T ss_pred CcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCce----EEEEcccccceeeeccCCeEEEccCCcH
Confidence 347888999999999999999999999999999999998766655554 9999999998888777779999999999
Q ss_pred HHHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCc-cccceeEEEEEecCCcEecccCCCcchHHHhhcCC
Q 009399 155 GEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGL-GADNVLDARIVDANGKILDREAMGEDLFWAIRGGG 233 (535)
Q Consensus 155 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~-~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~ 233 (535)
.+|.+++.++| ..|.+..+||+|. .||+.-++.+.||. +.|.+.++++++.+|++.+. ++.||-|+||-+.
T Consensus 94 ~~l~~~~~~~g-----l~GlE~l~gIPGs-vGgav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l--~~~el~f~YR~S~ 165 (291)
T COG0812 94 HDLVRFALENG-----LSGLEFLAGIPGS-VGGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWL--SAEELGFGYRTSP 165 (291)
T ss_pred HHHHHHHHHcC-----CcchhhhcCCCcc-cchhhhccCcccccchheeEEEEEEEcCCCCEEEE--EHHHhCcccccCc
Confidence 99999999997 5789999999998 66666677788877 57999999999999999974 3469999999766
Q ss_pred CCCc-EEEEEEEEEEeec
Q 009399 234 GASF-GIILSWKIKLVPV 250 (535)
Q Consensus 234 ~g~~-GiVt~~~~k~~p~ 250 (535)
...- .||++++|++.|-
T Consensus 166 f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 166 FKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred CCCCCEEEEEEEEEeCCC
Confidence 4322 8999999999885
No 28
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.62 E-value=2.7e-15 Score=150.13 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=135.1
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccc-cCCCCCeEEEEcCCCCCeEEcCCCCeEEEeCCCcH
Q 009399 76 PKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYV-SEIETPFIIVDLARLRAISVDIESNSAWVQTGATI 154 (535)
Q Consensus 76 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~-~~~~~~~ivIdl~~~~~i~~d~~~~~v~v~aG~~~ 154 (535)
....+++.|+|++|+++++++++++++|+.+.|+|+|....+.+ .++ +||.+.+|+.++++. ..++|+||+.|
T Consensus 31 G~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~g----~vi~~~~~~~i~~~~--~~v~a~AG~~~ 104 (302)
T PRK14650 31 GISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEIDF----PIIYTGHLNKIEIHD--NQIVAECGTNF 104 (302)
T ss_pred cEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccce----EEEEECCcCcEEEeC--CEEEEEeCCcH
Confidence 36778899999999999999999999999999999998766655 444 888886799998753 47999999999
Q ss_pred HHHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCc-cccceeEEEEEecCCcEecccCCCcchHHHhhcCC
Q 009399 155 GEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGL-GADNVLDARIVDANGKILDREAMGEDLFWAIRGGG 233 (535)
Q Consensus 155 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~-~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~ 233 (535)
.+|.+++.++| ..|.+..+||+|+ .||+.-++.+.||. +.|.|.++++++.+|++++.. ..|+-|+||.+.
T Consensus 105 ~~l~~~~~~~g-----l~GlE~l~gIPGT-VGGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~--~~e~~f~YR~S~ 176 (302)
T PRK14650 105 EDLCKFALQNE-----LSGLEFIYGLPGT-LGGAIWMNARCFGNEISEILDKITFIDEKGKTICKK--FKKEEFKYKISP 176 (302)
T ss_pred HHHHHHHHHcC-----CchhhhhcCCCcc-hhHHHHhhCCccccchheeEEEEEEEECCCCEEEEE--HHHcCccccccc
Confidence 99999999997 5788999999998 56666667777775 679999999999999998642 368999999765
Q ss_pred CCC-cEEEEEEEEEEeecC
Q 009399 234 GAS-FGIILSWKIKLVPVP 251 (535)
Q Consensus 234 ~g~-~GiVt~~~~k~~p~~ 251 (535)
... -.||++++|++.|..
T Consensus 177 f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 177 FQNKNTFILKATLNLKKGN 195 (302)
T ss_pred CCCCCEEEEEEEEEEcCCC
Confidence 221 249999999998753
No 29
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.60 E-value=2.9e-15 Score=152.06 Aligned_cols=161 Identities=15% Similarity=0.109 Sum_probs=133.4
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCeEEc-CCC--CeEEEeCCC
Q 009399 76 PKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVD-IES--NSAWVQTGA 152 (535)
Q Consensus 76 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i~~d-~~~--~~v~v~aG~ 152 (535)
....+++.|+|++|+++++++|+++++|+.+.|+|+|....+ +.++ +||.+ +|++++++ .++ .+++|+||+
T Consensus 19 G~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~~g----~vI~~-~~~~~~~~~~~~~~~~v~a~AG~ 92 (334)
T PRK00046 19 ARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DFDG----TVLLN-RIKGIEVLSEDDDAWYLHVGAGE 92 (334)
T ss_pred cEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CCCE----EEEEe-cCCceEEEecCCCeEEEEEEcCC
Confidence 367889999999999999999999999999999999987666 4544 88887 48998773 222 289999999
Q ss_pred cHHHHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCc-cccceeEEEEEecC-CcEecccCCCcchHHHhh
Q 009399 153 TIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGL-GADNVLDARIVDAN-GKILDREAMGEDLFWAIR 230 (535)
Q Consensus 153 ~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~-~~d~v~~~~vV~~~-G~i~~~~~~~~dLf~a~r 230 (535)
.|.+|.+++.++| ..|.+..+||+|+ .||+.-++.+.||. +.|.|.++++++.+ |++++.. ..|+.|+||
T Consensus 93 ~~~~l~~~~~~~g-----l~GlE~l~gIPGT-VGGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~--~~e~~f~YR 164 (334)
T PRK00046 93 NWHDLVLWTLQQG-----MPGLENLALIPGT-VGAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLS--AAECRFGYR 164 (334)
T ss_pred cHHHHHHHHHHcC-----chhhHHhcCCCcc-hhHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEE--HHHcCcccc
Confidence 9999999999997 5788999999998 56666667777775 67999999999987 9988642 369999999
Q ss_pred cCCCCC----cEEEEEEEEEEeec
Q 009399 231 GGGGAS----FGIILSWKIKLVPV 250 (535)
Q Consensus 231 G~~~g~----~GiVt~~~~k~~p~ 250 (535)
.+.... --||++++|++.|-
T Consensus 165 ~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 165 DSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cccCCCCCcCCEEEEEEEEEecCC
Confidence 765322 23999999999884
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.56 E-value=2.1e-14 Score=145.56 Aligned_cols=165 Identities=23% Similarity=0.250 Sum_probs=132.2
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCeEEc---CCCCeEEEeCCC
Q 009399 76 PKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVD---IESNSAWVQTGA 152 (535)
Q Consensus 76 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i~~d---~~~~~v~v~aG~ 152 (535)
....+++.|+|++|+++++++++++++|+.+.|+|+|....+.+.++ +||.+.+|+++++. .+...++|+||+
T Consensus 28 G~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~~G----~VI~l~~~~~i~i~~~~~~~~~v~agAG~ 103 (354)
T PRK14648 28 GAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGVPG----LMLSLRRFRSLHTQTQRDGSVLVHAGAGL 103 (354)
T ss_pred cEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCccE----EEEEeCCcCceEEeeccCCcEEEEEEeCC
Confidence 46778999999999999999999999999999999998877665655 99999779988752 222479999999
Q ss_pred cHHHHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCc-cccceeEEEEE--------------------ec
Q 009399 153 TIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGL-GADNVLDARIV--------------------DA 211 (535)
Q Consensus 153 ~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~-~~d~v~~~~vV--------------------~~ 211 (535)
.|.+|.+++.++| ..|.+..+||+|. .||+.-++.+.||. +.|.|.+++++ +.
T Consensus 104 ~~~~Lv~~~~~~g-----l~GlE~laGIPGT-VGGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~~ 177 (354)
T PRK14648 104 PVAALLAFCAHHA-----LRGLETFAGLPGS-VGGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQDK 177 (354)
T ss_pred cHHHHHHHHHHcC-----CcchhhhcCCCcc-hhhHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccccC
Confidence 9999999999997 5789999999998 55666667777775 67999999999 45
Q ss_pred CCcEec-----------ccCCCcchHHHhhcCCCCC---------cEEEEEEEEEEeec
Q 009399 212 NGKILD-----------REAMGEDLFWAIRGGGGAS---------FGIILSWKIKLVPV 250 (535)
Q Consensus 212 ~G~i~~-----------~~~~~~dLf~a~rG~~~g~---------~GiVt~~~~k~~p~ 250 (535)
+|+++. ..-.+.|+.|+||-+.... --||++++|++.|.
T Consensus 178 ~g~~~~~~~~~~~~~~~~~~~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~ 236 (354)
T PRK14648 178 RGECLGLDGGPFTCSSFQTVFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPG 236 (354)
T ss_pred CCceecccccccccccceEecHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCC
Confidence 667620 0113468999999765321 13999999999875
No 31
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.47 E-value=6.9e-14 Score=138.94 Aligned_cols=125 Identities=26% Similarity=0.336 Sum_probs=109.6
Q ss_pred EEEcCCCCCe-EEcCCCCeEEEeCCCcHHHHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCccccceeEE
Q 009399 128 IVDLARLRAI-SVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDA 206 (535)
Q Consensus 128 vIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~ 206 (535)
-|++..+..| ++|.+++||+|||+|+++|+.++|.+.|+.|++. ..-...++||.+.|-|.-..|.+||+..+.+.+.
T Consensus 105 ~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~-~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aY 183 (543)
T KOG1262|consen 105 QVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVL-PELDDLTVGGLINGVGIESSSHKYGLFQHICTAY 183 (543)
T ss_pred cCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeee-cccccceecceeeecccccccchhhhHHhhhhee
Confidence 4555555555 8999999999999999999999999998655443 4456789999999999999999999999999999
Q ss_pred EEEecCCcEec--ccCCCcchHHHhhcCCCCCcEEEEEEEEEEeecCceE
Q 009399 207 RIVDANGKILD--REAMGEDLFWAIRGGGGASFGIILSWKIKLVPVPETV 254 (535)
Q Consensus 207 ~vV~~~G~i~~--~~~~~~dLf~a~rG~~~g~~GiVt~~~~k~~p~~~~~ 254 (535)
|||++||++++ .+.+++|||+|+-.+. |++|..+.+|+|+.|..+.+
T Consensus 184 EvVladGelv~~t~dne~sdLfyaiPWSq-GTlgfLVaatiriIkvK~Yv 232 (543)
T KOG1262|consen 184 EVVLADGELVRVTPDNEHSDLFYAIPWSQ-GTLGFLVAATIRIIKVKKYV 232 (543)
T ss_pred EEEecCCeEEEecCCcccCceEEEccccc-CchheeeeeEEEEEeccceE
Confidence 99999999996 4558899999999999 89999999999999987754
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.40 E-value=3.6e-12 Score=125.93 Aligned_cols=149 Identities=20% Similarity=0.219 Sum_probs=119.0
Q ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCC-CCCeEEcCCCCeEEEeCCCcHH
Q 009399 77 KPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLAR-LRAISVDIESNSAWVQTGATIG 155 (535)
Q Consensus 77 ~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~-~~~i~~d~~~~~v~v~aG~~~~ 155 (535)
...+++ |++++|+++++ ++|+.+.|+|+|....+.+.++ +||.+.+ ++.++++ . +|+||+.|.
T Consensus 20 ~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~~g----~vI~l~~~~~~~~~~--~---~a~AG~~~~ 83 (273)
T PRK14651 20 PAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAGVPE----RVIRLGGEFAEWDLD--G---WVGGGVPLP 83 (273)
T ss_pred eEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCCcce----EEEEECCcceeEeEC--C---EEECCCcHH
Confidence 445556 99999999988 4899999999998876665554 8888865 6666553 2 699999999
Q ss_pred HHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCc-cccceeEEEEEecCCcEecccCCCcchHHHhhcCCC
Q 009399 156 EVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGL-GADNVLDARIVDANGKILDREAMGEDLFWAIRGGGG 234 (535)
Q Consensus 156 ~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~-~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~ 234 (535)
+|.+++.++| ..|.+..+||+|+ .||+.-++.+.||. +.|.|.++++++ +|++++.. +.|+.|+||.+..
T Consensus 84 ~l~~~~~~~g-----l~GlE~l~gIPGT-VGGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~--~~e~~f~YR~S~~ 154 (273)
T PRK14651 84 GLVRRAARLG-----LSGLEGLVGIPAQ-VGGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYS--PDELGFGYRHSGL 154 (273)
T ss_pred HHHHHHHHCC-----CcchhhhcCCCcc-hhhHHHhhCCccccChheeEEEEEEEE-CCCEEEEE--HHHccccccccCC
Confidence 9999999997 4688999999998 56666667777775 679999999997 89988642 4699999997653
Q ss_pred CCcEEEEEEEEEEeec
Q 009399 235 ASFGIILSWKIKLVPV 250 (535)
Q Consensus 235 g~~GiVt~~~~k~~p~ 250 (535)
..--||++++|++.|.
T Consensus 155 ~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 155 PPGHVVTRVRLKLRPS 170 (273)
T ss_pred CCCEEEEEEEEEECCC
Confidence 2224999999999874
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.10 E-value=3.4e-10 Score=110.90 Aligned_cols=142 Identities=13% Similarity=0.084 Sum_probs=111.8
Q ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCeEEcCCCCeEEEeCCCcHHH
Q 009399 77 KPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGE 156 (535)
Q Consensus 77 ~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i~~d~~~~~v~v~aG~~~~~ 156 (535)
..++++.|++.+ + ++|+.+.|+|+|....+.+.+ .+|-+++|+.++++. .+++|+||+.+.+
T Consensus 18 ~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~~-----~vv~~~~~~~~~~~~--~~v~~~AG~~l~~ 79 (257)
T PRK13904 18 PLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPKN-----LAILGKNFDYIKIDG--ECLEIGGATKSGK 79 (257)
T ss_pred eEEEEEEechhh-h----------CCCeEEEeceeEEEEecCCcc-----EEEEccCcCeEEEeC--CEEEEEcCCcHHH
Confidence 566677788887 5 799999999999876655533 444456688888753 4899999999999
Q ss_pred HHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCc-cccceeEEEEEecCCcEecccCCCcchHHHhhcCCCC
Q 009399 157 VYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGL-GADNVLDARIVDANGKILDREAMGEDLFWAIRGGGGA 235 (535)
Q Consensus 157 l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~-~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~g 235 (535)
|.+++.++| ..|.+..+||+|. .||+.-++.+.||. +.|.|.++++++ |+ + ...|+.|+||.+..
T Consensus 80 l~~~~~~~g-----l~GlE~l~gIPGt-VGGAv~mNaGa~g~ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S~~- 145 (257)
T PRK13904 80 IFNYAKKNN-----LGGFEFLGKLPGT-LGGLVKMNAGLKEYEISNNLESICTNG--GW-I----EKEDIGFGYRSSGI- 145 (257)
T ss_pred HHHHHHHCC-----CchhhhhcCCCcc-HHHHHHhcCCcCccchheeEEEEEEEe--eE-E----eHHHCcccccCcCC-
Confidence 999999997 5788999999998 55666666777775 679999999998 42 2 34689999997642
Q ss_pred CcEEEEEEEEEEeecC
Q 009399 236 SFGIILSWKIKLVPVP 251 (535)
Q Consensus 236 ~~GiVt~~~~k~~p~~ 251 (535)
-.||++++||+.|..
T Consensus 146 -~~iIl~a~f~l~~~~ 160 (257)
T PRK13904 146 -NGVILEARFKKTHGF 160 (257)
T ss_pred -CcEEEEEEEEECCCC
Confidence 259999999998853
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=95.49 E-value=0.018 Score=53.56 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=51.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCe-EEcCCCCeEEEeCCCcHHH
Q 009399 78 PEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI-SVDIESNSAWVQTGATIGE 156 (535)
Q Consensus 78 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~v~aG~~~~~ 156 (535)
+..++.|+|.+|+.++++ .+-...+.+||++....-. .+......+||++++..+ .|..+++.+++||++++.+
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~-~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~ 76 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMR-EGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSE 76 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHH-TTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcc-cCccccceEEEeEEecccccEEEeccEEEECCCccHHH
Confidence 456789999999999998 2235788899998531110 000001289999986544 3444578999999999999
Q ss_pred HHHH
Q 009399 157 VYYR 160 (535)
Q Consensus 157 l~~~ 160 (535)
+.+.
T Consensus 77 l~~~ 80 (171)
T PF00941_consen 77 LEES 80 (171)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 9886
No 35
>PRK09799 putative oxidoreductase; Provisional
Probab=94.61 E-value=0.12 Score=51.51 Aligned_cols=138 Identities=16% Similarity=0.100 Sum_probs=82.3
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCC-ccccCCCCCeEEEEcCCCCCe-EEcCCCCeEEEeCCCcHHHH
Q 009399 80 FIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGL-SYVSEIETPFIIVDLARLRAI-SVDIESNSAWVQTGATIGEV 157 (535)
Q Consensus 80 ~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~-~~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l 157 (535)
.++.|+|.+|+.++++. ++-...+.+||+.+... .... ..++||++++ .. .+..+++.+++||++++.++
T Consensus 4 ~y~~P~sl~Ea~~ll~~---~~~~a~ilAGGT~L~~~~~~~~----~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l 75 (258)
T PRK09799 4 QFFRPDSVEQALELKRR---YQDEAVWFAGGSKLNATPTRTD----KKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPL 75 (258)
T ss_pred cEeCCCCHHHHHHHHHh---CCCCCEEEecCCChHhhhCCCC----CCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHH
Confidence 46789999999988753 43335789999997321 1111 2389999975 44 34456689999999999999
Q ss_pred HHHH------HHcCCceeec-CCCCCcccccccccCCCCCCCcccCCccccc-----eeEEEEEecCCcEecccCCCcch
Q 009399 158 YYRI------AEKSKIHGFP-AGLCTSLGVGGHITGGAYGSMMRKYGLGADN-----VLDARIVDANGKILDREAMGEDL 225 (535)
Q Consensus 158 ~~~l------~~~g~~l~~~-~g~~~~vgigG~~~ggg~g~~s~~~G~~~d~-----v~~~~vV~~~G~i~~~~~~~~dL 225 (535)
.+.. .+.- ..+- +..-+..+|||.+..+-- ..|. .+..+|+..+++.+.. .|+
T Consensus 76 ~~~~~~~~~L~~a~--~~vas~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vpl----~~f 140 (258)
T PRK09799 76 RDARFIPAALREAL--GFVYSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLSI----EDY 140 (258)
T ss_pred HhCcccHHHHHHHH--HHhCCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEeH----HHh
Confidence 8632 1110 0011 122355678888764421 1343 2556666666654422 233
Q ss_pred HHHhhcCCCCCcEEEEEEEEE
Q 009399 226 FWAIRGGGGASFGIILSWKIK 246 (535)
Q Consensus 226 f~a~rG~~~g~~GiVt~~~~k 246 (535)
| .|.. =.|||++.+.
T Consensus 141 ~---~g~~---~Eil~~I~iP 155 (258)
T PRK09799 141 L---ACPC---DRLLTEIIIP 155 (258)
T ss_pred c---CCCC---CcEEEEEEcC
Confidence 3 3222 2588888764
No 36
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=93.97 E-value=0.17 Score=51.34 Aligned_cols=102 Identities=12% Similarity=0.103 Sum_probs=61.9
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCC-ccccCCCCCeEEEEcCCCCCe-EEc-CCCCeEEEeCCCcHHH
Q 009399 80 FIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGL-SYVSEIETPFIIVDLARLRAI-SVD-IESNSAWVQTGATIGE 156 (535)
Q Consensus 80 ~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~-~~~~~~~~~~ivIdl~~~~~i-~~d-~~~~~v~v~aG~~~~~ 156 (535)
.++.|+|.+|+.++++. +. ...+.+||+++... ..+... ...+||++++... .|. .+++.+++|+++++.+
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~--p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~ 79 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDR--YRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQ 79 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCC--CCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHH
Confidence 57889999999988764 22 35779999996311 111110 2389999986543 333 2446899999999999
Q ss_pred HHH--HHHHcCCcee-----e-cCCCCCcccccccccCC
Q 009399 157 VYY--RIAEKSKIHG-----F-PAGLCTSLGVGGHITGG 187 (535)
Q Consensus 157 l~~--~l~~~g~~l~-----~-~~g~~~~vgigG~~~gg 187 (535)
+.+ .+.+.-..|. + .+..-+..+|||.+..+
T Consensus 80 l~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a 118 (291)
T PRK09971 80 IIEDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNG 118 (291)
T ss_pred HhcChHHHHHhHHHHHHHHHhCCHHHhcceecccccccC
Confidence 985 1111100000 1 11333566788887754
No 37
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=93.58 E-value=0.25 Score=49.09 Aligned_cols=138 Identities=15% Similarity=0.153 Sum_probs=79.7
Q ss_pred EEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCC-CCccccCCCCCeEEEEcCCCCCe-EEcCCCCeEEEeCCCcHHHHH
Q 009399 81 IFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYE-GLSYVSEIETPFIIVDLARLRAI-SVDIESNSAWVQTGATIGEVY 158 (535)
Q Consensus 81 vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~-g~~~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~ 158 (535)
++.|+|.+|+.++++. ++-.-.+.+|||++. ...... ..++||++++ .. .|..+++.+++||++++.++.
T Consensus 4 y~~P~sl~Ea~~ll~~---~~~~a~~lAGGTdL~~~~~~~~----~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~ 75 (257)
T TIGR03312 4 FFRPESTIQALELKKR---HTGVAVWFAGGSKLNATPTRTD----KKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLI 75 (257)
T ss_pred eECCCCHHHHHHHHHh---CCCCCEEEecCcchhhhhcccC----CCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHH
Confidence 5789999999987653 322356789999974 222111 2388999875 44 344456799999999999987
Q ss_pred HH------HHHcCCceeecCCCCCcccccccccCCCCCCCcccCCccccc-----eeEEEEEecCCcEecccCCCcchHH
Q 009399 159 YR------IAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADN-----VLDARIVDANGKILDREAMGEDLFW 227 (535)
Q Consensus 159 ~~------l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~~~d~-----v~~~~vV~~~G~i~~~~~~~~dLf~ 227 (535)
+. |.+.- ...-.+..-+..++||.+..+.- ..|. .+..+|+..+.+.+.. .|+|
T Consensus 76 ~~~~~~~~L~~aa-~~va~~qIRN~gTlGGNl~~a~p---------~~D~~~~LlaldA~v~l~~~r~vp~----~dF~- 140 (257)
T TIGR03312 76 DNELTPAALKEAL-GFVYSRHIRNQATIGGEIAAFQS---------ESLLLPVLLALKATVVLANASQMDI----EDYL- 140 (257)
T ss_pred hCcchHHHHHHHH-HHhCCHHHhccccHHHHhhcCCC---------chHHHHHHHHcCCEEEEecCcEEeH----HHhc-
Confidence 52 22210 00001233356678888775431 1342 2455566555543322 2333
Q ss_pred HhhcCCCCCcEEEEEEEEE
Q 009399 228 AIRGGGGASFGIILSWKIK 246 (535)
Q Consensus 228 a~rG~~~g~~GiVt~~~~k 246 (535)
.|.. + -+||++.+.
T Consensus 141 --~g~~-~--Ell~~V~iP 154 (257)
T TIGR03312 141 --ASEQ-R--ELIVEVIIP 154 (257)
T ss_pred --CCCC-C--cEEEEEEcC
Confidence 2222 2 488888764
No 38
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=92.36 E-value=0.43 Score=51.63 Aligned_cols=151 Identities=13% Similarity=0.138 Sum_probs=86.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCC-ccccCCCCCeEEEEcCCCCCe-EEcCCCCeEEEeCCCcHH
Q 009399 78 PEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGL-SYVSEIETPFIIVDLARLRAI-SVDIESNSAWVQTGATIG 155 (535)
Q Consensus 78 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~-~~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~v~aG~~~~ 155 (535)
...++.|+|.+|+.++++. +. ...+.+||+++.-. ...... ...+||++++..+ .+..+++.+++||++++.
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~--~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~ 265 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRD--LPDVIYVGQVAELKRIEETDDGIEIGAAVTLT 265 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCC--CCeEEECCCChhhccEEEcCCEEEEecCCcHH
Confidence 4568999999999998764 22 35778999996311 111110 2389999986544 344456789999999999
Q ss_pred HHHHHHHHcCCce-----eec-CCCCCcccccccccCCCCCCCcccCCccccce-----e--EEEEEecCCcEecccCCC
Q 009399 156 EVYYRIAEKSKIH-----GFP-AGLCTSLGVGGHITGGAYGSMMRKYGLGADNV-----L--DARIVDANGKILDREAMG 222 (535)
Q Consensus 156 ~l~~~l~~~g~~l-----~~~-~g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v-----~--~~~vV~~~G~i~~~~~~~ 222 (535)
++.+.+.++=-.+ .+- ...-+..+|||.+..+.- ..|.. + .+++..++|+... . =
T Consensus 266 el~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP---------~sD~~p~LlALdA~v~l~~~~G~R~v-p--l 333 (467)
T TIGR02963 266 DAYAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGSP---------IGDSPPALIALGARLTLRKGEGRRTL-P--L 333 (467)
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCCC---------chHHHHHHHHcCCEEEEEcCCCcEEE-e--H
Confidence 9987655431000 011 123356678888765432 23432 3 3444555664221 1 1
Q ss_pred cchHHHhhcCCCCCcEEEEEEEEE
Q 009399 223 EDLFWAIRGGGGASFGIILSWKIK 246 (535)
Q Consensus 223 ~dLf~a~rG~~~g~~GiVt~~~~k 246 (535)
.|+|-.++--.-..--||+++.+.
T Consensus 334 ~dF~~g~~kt~L~~~EiI~~I~iP 357 (467)
T TIGR02963 334 EDFFIDYGKTDRQPGEFVEALHVP 357 (467)
T ss_pred HHhhcccccccCCCCceEEEEEec
Confidence 254443331100122499998775
No 39
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=90.46 E-value=0.17 Score=50.51 Aligned_cols=33 Identities=30% Similarity=0.567 Sum_probs=24.8
Q ss_pred hhhhhhhhhhhHHHHHHhHhhcCCCCCcccCCCC
Q 009399 494 TAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSI 527 (535)
Q Consensus 494 ~~~~~~yyG~n~~RL~~IK~kyDP~~vF~~~q~i 527 (535)
++|. .-||+.|+|..+.|++|||.+++.-=|.|
T Consensus 248 ~dW~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 248 EDWR-RHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHH-HHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHH-HHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 4795 67899999999999999999999877776
No 40
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=90.46 E-value=0.55 Score=48.10 Aligned_cols=76 Identities=18% Similarity=0.186 Sum_probs=50.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCe-EEcCCCCeEEEeCCCcHHHH
Q 009399 79 EFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI-SVDIESNSAWVQTGATIGEV 157 (535)
Q Consensus 79 ~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l 157 (535)
-.++.|+|.+|..++++- ++ .-.+.+||+++...-. .+-.....+||++++..+ .|..+++.+++|+++++.++
T Consensus 5 f~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~-~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l 79 (321)
T TIGR03195 5 FRTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLR-RGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAAL 79 (321)
T ss_pred ceEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHh-cccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHH
Confidence 357889999999988764 22 2467899998521111 000002389999975443 23345678999999999998
Q ss_pred HH
Q 009399 158 YY 159 (535)
Q Consensus 158 ~~ 159 (535)
.+
T Consensus 80 ~~ 81 (321)
T TIGR03195 80 AE 81 (321)
T ss_pred hh
Confidence 65
No 41
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=90.19 E-value=0.77 Score=45.03 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=20.1
Q ss_pred hhHHHHHHhHhhcCCCCCcccC
Q 009399 503 DNFMRLVRVKTKVDPDNFFRHE 524 (535)
Q Consensus 503 ~n~~RL~~IK~kyDP~~vF~~~ 524 (535)
.++++-++||+++||+++|.++
T Consensus 176 Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 176 KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred cCHHHHHHHHHHhCCCCccCCH
Confidence 6889999999999999999875
No 42
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=89.32 E-value=0.48 Score=47.28 Aligned_cols=70 Identities=10% Similarity=0.012 Sum_probs=48.5
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCC-ccc-cCCCCCeEEEEcCCCCCe-EEcCCCCeEEEeCCCcHHHHHH
Q 009399 84 PLYESHVQAAVICSKQLGIHLRVRSGGHDYEGL-SYV-SEIETPFIIVDLARLRAI-SVDIESNSAWVQTGATIGEVYY 159 (535)
Q Consensus 84 P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~-~~~-~~~~~~~ivIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~~ 159 (535)
|+|.+|+.++++.. . ...+.+||+++.-. -.. ... ...+||++++..+ .|..+++.+++|+++++.++.+
T Consensus 1 P~sl~ea~~ll~~~---~-~a~ivaGgT~l~~~~~~~~~~~--~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~ 73 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFVSGSTLLQLQWEKGTLPM--KQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRK 73 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEEEccChHHHHHhcCcCCC--CCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhh
Confidence 78889998888742 1 35788999986311 111 000 1289999986654 4555678999999999999964
No 43
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=86.73 E-value=0.63 Score=46.16 Aligned_cols=27 Identities=22% Similarity=0.484 Sum_probs=18.8
Q ss_pred hhhhhhhhhHHHHHHhHhhcCCCCCcccC
Q 009399 496 WGSRYFKDNFMRLVRVKTKVDPDNFFRHE 524 (535)
Q Consensus 496 ~~~~yyG~n~~RL~~IK~kyDP~~vF~~~ 524 (535)
..+.| .++++-.++|+++||+|+|.++
T Consensus 228 l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 228 LRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 44455 7899999999999999999763
No 44
>PLN02906 xanthine dehydrogenase
Probab=82.84 E-value=2.4 Score=51.87 Aligned_cols=80 Identities=5% Similarity=0.077 Sum_probs=54.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCc-cccCCCCCeEEEEcCCCCCe-EEcCCCCeEEEeCCCcHH
Q 009399 78 PEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLS-YVSEIETPFIIVDLARLRAI-SVDIESNSAWVQTGATIG 155 (535)
Q Consensus 78 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~-~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~v~aG~~~~ 155 (535)
....+.|+|.+|+.++++.. . ..++.+||+++...- .... ...++||++++..+ .|..++..+++||++++.
T Consensus 228 ~~~~~~P~tl~ea~~ll~~~---~-~a~ivAGGTdl~~~~~~~~~--~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~ 301 (1319)
T PLN02906 228 GLTWYRPTSLQHLLELKAEY---P-DAKLVVGNTEVGIEMRFKNA--QYPVLISPTHVPELNAIKVKDDGLEIGAAVRLS 301 (1319)
T ss_pred CceEECcCCHHHHHHHHHhC---C-CCEEEEcCchhHHHhhhccC--CCCeEEECCCChhhhcEEecCCEEEEecCCcHH
Confidence 34688999999999977642 1 246789999973211 1111 02389999985554 344456789999999999
Q ss_pred HHHHHHHH
Q 009399 156 EVYYRIAE 163 (535)
Q Consensus 156 ~l~~~l~~ 163 (535)
++.+.|.+
T Consensus 302 el~~~l~~ 309 (1319)
T PLN02906 302 ELQNLFRK 309 (1319)
T ss_pred HHHHHHHH
Confidence 99986544
No 45
>PLN00192 aldehyde oxidase
Probab=82.67 E-value=3.2 Score=50.87 Aligned_cols=84 Identities=11% Similarity=0.094 Sum_probs=56.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCe-EEcCCCCeEEEeCCCcHHH
Q 009399 78 PEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI-SVDIESNSAWVQTGATIGE 156 (535)
Q Consensus 78 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~v~aG~~~~~ 156 (535)
....+.|.|.+|+.++++.....+-..++..||+++.-.-.... ..++||++++..+ .|..++..+++||++++.+
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~~~~---p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~e 309 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKDEEL---YDKYIDIRHIPELSMIRRDEKGIEIGAVVTISK 309 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeeccCC---CCeEEEcCCChhhhcEEecCCEEEEeecCcHHH
Confidence 45689999999999887642100123667889999632211111 2389999985554 3444567999999999999
Q ss_pred HHHHHHHc
Q 009399 157 VYYRIAEK 164 (535)
Q Consensus 157 l~~~l~~~ 164 (535)
+.+.+.+.
T Consensus 310 l~~~l~~~ 317 (1344)
T PLN00192 310 AIEALREE 317 (1344)
T ss_pred HHHHHHhh
Confidence 98766543
No 46
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=82.34 E-value=3.6 Score=39.72 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=20.4
Q ss_pred hhhhhhhh-hHHHHHHhHhhcCCCCCcc
Q 009399 496 WGSRYFKD-NFMRLVRVKTKVDPDNFFR 522 (535)
Q Consensus 496 ~~~~yyG~-n~~RL~~IK~kyDP~~vF~ 522 (535)
|-..++|+ .+.-+++||+.+||.|+++
T Consensus 217 ~~~~~~~~~~~~~~~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 217 YLEEEYGPAALRLMRAIKQAFDPNGILN 244 (248)
T ss_dssp HHCHHCHHHHHHHHHHHHHHH-TTS-BS
T ss_pred HHHHhcchHHHHHHHHhhhccCCccCCC
Confidence 55556665 7999999999999999984
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=81.46 E-value=4.2 Score=49.84 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=54.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCc---cccCCCCCeEEEEcCCCCCe-EEcCCCCeEEEeCCCcH
Q 009399 79 EFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLS---YVSEIETPFIIVDLARLRAI-SVDIESNSAWVQTGATI 154 (535)
Q Consensus 79 ~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~---~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~v~aG~~~ 154 (535)
...+.|+|.+|+.++++. +. ..++..||+++.-.- .... ..+||+++...+ .+..++..+++||++++
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~----~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~ 308 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFH----PVIISPDRIEELSVVNHTGDGLTLGAGLSL 308 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCC----CeEEECCCChhhhcEEEcCCEEEEeccccH
Confidence 468899999999998764 22 356789999973211 1122 279999986554 34455679999999999
Q ss_pred HHHHHHHH
Q 009399 155 GEVYYRIA 162 (535)
Q Consensus 155 ~~l~~~l~ 162 (535)
.++.+.|.
T Consensus 309 ~el~~~l~ 316 (1330)
T TIGR02969 309 AQVKDILA 316 (1330)
T ss_pred HHHHHHHH
Confidence 99998654
No 48
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=74.06 E-value=12 Score=37.69 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=52.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCC-e-EEcCCCCeEEEeCCCcHH
Q 009399 78 PEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRA-I-SVDIESNSAWVQTGATIG 155 (535)
Q Consensus 78 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~-i-~~d~~~~~v~v~aG~~~~ 155 (535)
+-.+.+|.|.+|...+++ +++ -..+.+|||++...-...- ....-+||++++.. . .+..+++.+++||-+++.
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~-~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ 77 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGI-ERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLT 77 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhccc-CCcceEEEecCChhhhceEeecCCEEEEeecccHH
Confidence 567889999999888776 343 5688899999752111100 00226889988742 2 233456779999999999
Q ss_pred HHHH
Q 009399 156 EVYY 159 (535)
Q Consensus 156 ~l~~ 159 (535)
++.+
T Consensus 78 ei~~ 81 (284)
T COG1319 78 EIAR 81 (284)
T ss_pred HHHh
Confidence 9963
No 49
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=64.31 E-value=15 Score=38.13 Aligned_cols=141 Identities=16% Similarity=0.138 Sum_probs=81.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCe-EEcCCCCeEEEeCCCcHHH
Q 009399 78 PEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI-SVDIESNSAWVQTGATIGE 156 (535)
Q Consensus 78 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i-~~d~~~~~v~v~aG~~~~~ 156 (535)
-..++.|.+.+|...++.. + =..++..|++.+.-+...... +-..||-..++..+ +|+.+.+.+++++|+++.+
T Consensus 203 ~~r~~~P~~l~D~a~l~aa--~--P~AtivAGsTDvgLwVtk~mr-~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~ 277 (493)
T COG4630 203 DDRFIVPATLADFADLLAA--H--PGATIVAGSTDVGLWVTKQMR-DLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQ 277 (493)
T ss_pred CceeEeeccHHHHHHHHhh--C--CCCEEEecCcchhhHHHHHHh-hcCCeEEecchhhhheeeecCCcEEEccCccHHH
Confidence 4457889999999998743 2 235666788876422222110 01245666666554 5666778999999999999
Q ss_pred HHHHHHHcCCcee--e-cCCC---CCcccccccccCCCCCCCcccCCccc--cceeEEEEEecCCcEecccCCCcchHHH
Q 009399 157 VYYRIAEKSKIHG--F-PAGL---CTSLGVGGHITGGAYGSMMRKYGLGA--DNVLDARIVDANGKILDREAMGEDLFWA 228 (535)
Q Consensus 157 l~~~l~~~g~~l~--~-~~g~---~~~vgigG~~~ggg~g~~s~~~G~~~--d~v~~~~vV~~~G~i~~~~~~~~dLf~a 228 (535)
.++.|.++=-.+. + --|. -+.-+|||.+..|.- -|-+- =..++.++++-.|+-.+. -.-.|+|-+
T Consensus 278 a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSP------IGDtPPaLIALgA~ltLr~g~~~Rt-lPLe~~Fi~ 350 (493)
T COG4630 278 AYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSP------IGDTPPALIALGATLTLRSGDGRRT-LPLEDYFIA 350 (493)
T ss_pred HHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCc------CCCCCchhhhcCcEEEEEecCCccc-ccHHHHHHH
Confidence 9999987621000 0 0122 134456776554431 11111 123777888776665531 112477777
Q ss_pred hh
Q 009399 229 IR 230 (535)
Q Consensus 229 ~r 230 (535)
|+
T Consensus 351 Y~ 352 (493)
T COG4630 351 YG 352 (493)
T ss_pred hh
Confidence 76
No 50
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=64.13 E-value=11 Score=40.10 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=23.4
Q ss_pred hhhhhhhh-hhHHHHHHhHhhcCCCCCcc
Q 009399 495 AWGSRYFK-DNFMRLVRVKTKVDPDNFFR 522 (535)
Q Consensus 495 ~~~~~yyG-~n~~RL~~IK~kyDP~~vF~ 522 (535)
.|....|| ..++-|++||+.+||+|+++
T Consensus 382 ~~~~~~~~~~~~~~~~~iK~~fDP~~ilN 410 (413)
T TIGR00387 382 EFMPYKFNEKELETMRAIKKAFDPDNILN 410 (413)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcCcCCC
Confidence 46666677 47999999999999999985
No 51
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=60.81 E-value=23 Score=36.93 Aligned_cols=81 Identities=20% Similarity=0.151 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhhhcccCCCCCCcccHHHHhccCCCCCCCCcee--ecCCCCChhhHhhhccccccCCCCCCCCceEEEEc
Q 009399 7 YILSLLLILLLSSASRTNSDSVEDSFIHCLNSNSDLSVPFSTF--CDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTP 84 (535)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~--~~~~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P 84 (535)
.++.++|||+..+-+..|+++. -.-|..-... |..+| |.+++..|.. ..|. +...|+..
T Consensus 2 ~~~~~~~~~~~~~~~~~c~~~~---~~~~~p~~~~---~~~~~~~~~~~~~~~~~--------~~~~-----~~tti~~~ 62 (358)
T cd02875 2 IILLILLILLAISKSYECPCIE---PELCEPIEIG---PRFEFLVFSVNSTNYPN--------YDWS-----KVTTIAIF 62 (358)
T ss_pred chHHHHHHHHHHHhcCCCCCCC---HhhCCCccCC---CceEEEEEEeCCCcCcc--------cccc-----cceEEEec
Confidence 4556667777666666676664 2336443332 44565 5666655542 3575 45666655
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEe
Q 009399 85 LYESHVQAAVICSKQLGIHLRVRS 108 (535)
Q Consensus 85 ~s~~dv~~~v~~a~~~~~~v~v~g 108 (535)
.+.+ .+++..|+++|++|.+.+
T Consensus 63 ~~~~--~~~~~~A~~~~v~v~~~~ 84 (358)
T cd02875 63 GDID--DELLCYAHSKGVRLVLKG 84 (358)
T ss_pred CCCC--HHHHHHHHHcCCEEEEEC
Confidence 6655 478889999999999764
No 52
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=57.88 E-value=26 Score=38.83 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=26.8
Q ss_pred hhhhhhhhh-hHHHHHHhHhhcCCCCCcccCCCCCC
Q 009399 495 AWGSRYFKD-NFMRLVRVKTKVDPDNFFRHEQSIPP 529 (535)
Q Consensus 495 ~~~~~yyG~-n~~RL~~IK~kyDP~~vF~~~q~i~~ 529 (535)
.|-..+||+ .++=+++||+.+||.|+++ |--|-|
T Consensus 516 ~~l~~~~g~~~~~lm~~IK~a~DP~gILN-PGKi~~ 550 (555)
T PLN02805 516 KYLEKELGIEALQTMKRIKKALDPNNIMN-PGKLIP 550 (555)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcCcCCC-CCceeC
Confidence 577788884 7999999999999999994 433433
No 53
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=47.00 E-value=44 Score=33.24 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=65.3
Q ss_pred ccHHHHhccCCCCCCCCceeecCCCCChhhHhhhccccccCCCCCCCCceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeC
Q 009399 30 DSFIHCLNSNSDLSVPFSTFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSG 109 (535)
Q Consensus 30 ~~~~~cl~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~gg 109 (535)
++..+-|....- |.+.|++|+-++...+.. . ...++++|++++-+...+.|.+-++.=|
T Consensus 119 ~~a~~~l~~~Ll---P~a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~VliKG 177 (263)
T COG0351 119 EEAVEALREELL---PLATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKAVLIKG 177 (263)
T ss_pred hHHHHHHHHHhh---ccCeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 444454454432 678899999998887632 1 2689999999999999999998888888
Q ss_pred CCCCCCCccccCCCCCeEEEEcCCCCCe---EEcCCCCeEEEeCCCcHHHHHHHHHHcC
Q 009399 110 GHDYEGLSYVSEIETPFIIVDLARLRAI---SVDIESNSAWVQTGATIGEVYYRIAEKS 165 (535)
Q Consensus 110 Gh~~~g~~~~~~~~~~~ivIdl~~~~~i---~~d~~~~~v~v~aG~~~~~l~~~l~~~g 165 (535)
||... ...+ ++.|-..+..+ .++.+ =+=|.|+++.-.+..-..+|
T Consensus 178 GH~~~---~~~D-----~l~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa~LA~G 225 (263)
T COG0351 178 GHLEG---EAVD-----VLYDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAANLAKG 225 (263)
T ss_pred CCCCC---Ccee-----EEEcCCceEEEeccccCCC---CCCCccHHHHHHHHHHHHcC
Confidence 99864 1111 44443311111 12211 13578888876665544444
No 54
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=45.11 E-value=16 Score=39.93 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=23.4
Q ss_pred hhhhhhhh-hhHHHHHHhHhhcCCCCCccc
Q 009399 495 AWGSRYFK-DNFMRLVRVKTKVDPDNFFRH 523 (535)
Q Consensus 495 ~~~~~yyG-~n~~RL~~IK~kyDP~~vF~~ 523 (535)
.|-...|| +.++-+++||+.+||+|+++-
T Consensus 439 ~~l~~~~g~~~~~~m~~IK~~fDP~~iLNP 468 (499)
T PRK11230 439 NQMCAQFNSDEITLFHAVKAAFDPDGLLNP 468 (499)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCCCcCCCC
Confidence 35555666 579999999999999999953
No 55
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=41.76 E-value=16 Score=37.98 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=17.9
Q ss_pred hhh-HHHHHHhHhhcCCCCCcc
Q 009399 502 KDN-FMRLVRVKTKVDPDNFFR 522 (535)
Q Consensus 502 G~n-~~RL~~IK~kyDP~~vF~ 522 (535)
..+ .+-.++||+++||.++|+
T Consensus 323 ~~~~~~l~~~lK~~fDP~~iln 344 (352)
T PRK11282 323 PAPLLRIHRRLKQAFDPAGIFN 344 (352)
T ss_pred CHHHHHHHHHHHHhcCcccCCC
Confidence 345 788899999999999994
No 56
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=39.84 E-value=38 Score=36.89 Aligned_cols=68 Identities=10% Similarity=0.127 Sum_probs=45.6
Q ss_pred cHHHHhccCCCCCCCCcee-ecCCCCChhhHhhhccccccCCCCCCCCceEEEEcCCHHHHHHHHHHHHhc-CCeEEE
Q 009399 31 SFIHCLNSNSDLSVPFSTF-CDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQL-GIHLRV 106 (535)
Q Consensus 31 ~~~~cl~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~-~~~v~v 106 (535)
.|.+-.+++.. |..-| +..+-|+-+.+.. ++-.+.= ...|..+++|.|+|+|..+++.|+++ ..||.+
T Consensus 112 rLv~kara~G~---~I~gvvIsAGIP~le~A~E-lI~~L~~----~G~~yv~fKPGtIeqI~svi~IAka~P~~pIil 181 (717)
T COG4981 112 RLVQKARASGA---PIDGVVISAGIPSLEEAVE-LIEELGD----DGFPYVAFKPGTIEQIRSVIRIAKANPTFPIIL 181 (717)
T ss_pred HHHHHHHhcCC---CcceEEEecCCCcHHHHHH-HHHHHhh----cCceeEEecCCcHHHHHHHHHHHhcCCCCceEE
Confidence 35555555542 34444 5677777776643 2222221 24799999999999999999999998 567665
No 57
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=39.76 E-value=17 Score=38.66 Aligned_cols=20 Identities=25% Similarity=0.728 Sum_probs=18.9
Q ss_pred hhHHHHHHhHhhcCCCCCcc
Q 009399 503 DNFMRLVRVKTKVDPDNFFR 522 (535)
Q Consensus 503 ~n~~RL~~IK~kyDP~~vF~ 522 (535)
.|+++-.++|+++||.++|.
T Consensus 485 ~n~~~flkvr~~lDP~~lFs 504 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFS 504 (518)
T ss_pred cChHHHHHHHHhcCccchhh
Confidence 79999999999999999993
No 58
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=37.44 E-value=1.9e+02 Score=30.81 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=32.2
Q ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCeEEEEeCC
Q 009399 77 KPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGG 110 (535)
Q Consensus 77 ~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggG 110 (535)
....|+.|+-.|-...+.+.|+++|+++.-|+.|
T Consensus 260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 4778999999999999999999999999999988
No 59
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=35.48 E-value=49 Score=33.73 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=37.6
Q ss_pred cCCCCChhhHhhhccccccCCCCCCCCceEEEEcCC------HHHHHHHHHHHHhcC------CeEEEEeCCC
Q 009399 51 DQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLY------ESHVQAAVICSKQLG------IHLRVRSGGH 111 (535)
Q Consensus 51 ~~~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s------~~dv~~~v~~a~~~~------~~v~v~ggGh 111 (535)
.|+...|.+.+. .-+.||+ ....+++|.. +++|.++++.+.+.+ +=|.+||||.
T Consensus 22 s~~gAa~~D~~~--~~~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 22 SPTGAAIQDFLR--TLKRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred CCchHHHHHHHH--HHHHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 466778888765 3345776 4566777754 688999999998654 5566777775
No 60
>PF03941 INCENP_ARK-bind: Inner centromere protein, ARK binding region; InterPro: IPR005635 This region of the inner centromere protein has been found to be necessary and sufficient for binding to aurora-related kinase. This interaction has been implicated in the coordination of chromosome segregation with cell division in yeast [].; PDB: 2BFX_C 2BFY_C 3ZTX_D 2VGO_D 2VGP_D 2VRX_D 4AF3_D.
Probab=34.11 E-value=17 Score=27.07 Aligned_cols=35 Identities=31% Similarity=0.753 Sum_probs=23.7
Q ss_pred hhhhhhhhhhhhHHHHHHhHhhcCCCCCcccCCCCCCCCCC
Q 009399 493 ATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPLPLQ 533 (535)
Q Consensus 493 ~~~~~~~yyG~n~~RL~~IK~kyDP~~vF~~~q~i~~~~~~ 533 (535)
.+.|.+ +.++.+...-.+.+||+.+|.. |+|..|.
T Consensus 18 iP~WA~---~~~L~~~L~~Q~~~Dpd~IFG~---~~~~~Le 52 (57)
T PF03941_consen 18 IPSWAQ---SPNLRQALKKQQNIDPDEIFGP---IPPLNLE 52 (57)
T ss_dssp --GGGS---HHHHHHHHHHHHHS-HHHHCTT---SB---CC
T ss_pred CCCCcC---cHHHHHHHHHHhccCHHHHcCC---CCCCCHH
Confidence 346876 6799999999999999999963 5666554
No 61
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=33.02 E-value=46 Score=31.24 Aligned_cols=25 Identities=28% Similarity=0.133 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCC
Q 009399 90 VQAAVICSKQLGIHLRVRSGGHDYE 114 (535)
Q Consensus 90 v~~~v~~a~~~~~~v~v~ggGh~~~ 114 (535)
..+.+++++++++|+.|.++|.++.
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~f 102 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPF 102 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchH
Confidence 4567889999999999999999964
No 62
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=31.28 E-value=36 Score=30.53 Aligned_cols=40 Identities=18% Similarity=-0.021 Sum_probs=33.2
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCeEEEEeC-CCCCCCCccc
Q 009399 80 FIFTPLYESHVQAAVICSKQLGIHLRVRSG-GHDYEGLSYV 119 (535)
Q Consensus 80 ~vv~P~s~~dv~~~v~~a~~~~~~v~v~gg-Gh~~~g~~~~ 119 (535)
+=+.|++.+.+...+++++.+++||.+... |+.+.+...+
T Consensus 8 AEvwprdys~ler~l~f~r~~~~pVrvv~~ng~~f~myV~g 48 (165)
T PF03614_consen 8 AEVWPRDYSMLERRLQFWRFNDIPVRVVSENGQVFCMYVSG 48 (165)
T ss_pred cccCcchHHHHHHHHHHHHhcCCceEEEecCCcEEEEEEec
Confidence 446799999999999999999999999875 8887654443
No 63
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=30.00 E-value=1.3e+02 Score=27.80 Aligned_cols=69 Identities=12% Similarity=0.044 Sum_probs=32.3
Q ss_pred eEEEEcCCHH-HHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCeEEcCCCCeEEEeCCC
Q 009399 79 EFIFTPLYES-HVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGA 152 (535)
Q Consensus 79 ~~vv~P~s~~-dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i~~d~~~~~v~v~aG~ 152 (535)
-.++.|.+.+ |++++++-+.+.++|++..+ -..-...+..... -+-||++--+.+-.+++...+ +.|..
T Consensus 85 Vllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs-~~~~~~~~l~~~~---~~~Idl~~~~~LvP~EdG~Ri-g~P~~ 154 (172)
T PF10740_consen 85 VLLFSPFSTDEEAVALAKQLIEQGIPFVGVS-PNKPDEEDLEDLA---DVHIDLKLPKPLVPTEDGDRI-GFPHL 154 (172)
T ss_dssp EEEEES-S--HHHHHHHHHHHHHT--EEEEE--SS---TTGGG-S---SS-EE----S-SEE-TTS-EE----HH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE-ecCCCCCchhhhh---hheeecccCCCcccCCCCCEe-cchHH
Confidence 3456777777 99999999999999999999 1111122222211 167998877777666665444 33433
No 64
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.23 E-value=72 Score=29.74 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=30.9
Q ss_pred cCCCCCCCCceEEEEcCCHHHHHHHHHHHHhcCCeEEE
Q 009399 69 RYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRV 106 (535)
Q Consensus 69 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v 106 (535)
||-. ...|..||..++++++.++.+.|++.+++..+
T Consensus 118 ~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 118 RWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred HHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 6764 35899999999999999999999999887554
No 65
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=27.82 E-value=65 Score=34.55 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=38.3
Q ss_pred cCCCCChhhHhhhccccccCCCCCCCCceEEEEcCCH------HHHHHHHHHHHhc--CCeEEEEeCCC
Q 009399 51 DQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYE------SHVQAAVICSKQL--GIHLRVRSGGH 111 (535)
Q Consensus 51 ~~~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~------~dv~~~v~~a~~~--~~~v~v~ggGh 111 (535)
.|....+.+.+. .-+.||+. -..+++|..+ .+|.++++.+.+. .+=|.+||||+
T Consensus 143 s~~gAa~~D~~~--~~~~r~p~-----~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 143 SPTGAAIRDILT--VLRRRFPL-----VEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred CCccHHHHHHHH--HHHhcCCC-----CeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 466777887764 44678853 4667777665 8999999888874 55677788774
No 66
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=26.58 E-value=5.2e+02 Score=28.86 Aligned_cols=127 Identities=17% Similarity=0.238 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCe------EEcCCC---CeEEEeCCCc----
Q 009399 87 ESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI------SVDIES---NSAWVQTGAT---- 153 (535)
Q Consensus 87 ~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i------~~d~~~---~~v~v~aG~~---- 153 (535)
.++|.+.++.+.+++-++..+..-.+++....+.+ |+||-+ |-.+ -.++++ .+..|=|--+
T Consensus 312 ~~eI~a~i~~~~~~~P~laMVnSdkGITNLHvPsD-----VIIDAS-MPAmIR~~GkmW~~dG~~~Dt~avIPD~sYA~v 385 (741)
T TIGR00178 312 QEEIEADLQAVYAQRPELAMVNSDKGITNLHVPSD-----VIVDAS-MPAMIRASGKMWGPDGKLKDTKAVIPDRCYAGV 385 (741)
T ss_pred HHHHHHHHHHHHhhCCCEEEeccCCCccccCCCcC-----eEEecC-cHHHHhccCCccCCCCCcccceeecCCccchHH
Confidence 57799999999999999999988877777777776 889865 2221 122222 2344433333
Q ss_pred HHHHHHHHHHcCCceeec-CCCCCcccccccccCCCCCCCcccCCcc-------ccceeEEEEEecCCcEec-ccCCCcc
Q 009399 154 IGEVYYRIAEKSKIHGFP-AGLCTSLGVGGHITGGAYGSMMRKYGLG-------ADNVLDARIVDANGKILD-REAMGED 224 (535)
Q Consensus 154 ~~~l~~~l~~~g~~l~~~-~g~~~~vgigG~~~ggg~g~~s~~~G~~-------~d~v~~~~vV~~~G~i~~-~~~~~~d 224 (535)
..++++.+.++|. +-.. .|+.+.||+.. .-.-.||+. .|- .++||+.+|+++. -+.+.-|
T Consensus 386 Yq~~I~~ck~nGa-fDp~TmGsV~NVGLMA--------qKAEEYGSHdkTFei~~~G--~v~Vvd~~G~vl~eh~Ve~GD 454 (741)
T TIGR00178 386 YQVVIEDCKQNGA-FDPTTMGTVPNVGLMA--------QKAEEYGSHDKTFQIPADG--VVRVVDSSGEVLLEQSVEAGD 454 (741)
T ss_pred HHHHHHHHHhcCC-CCcccccCCcchhHhH--------HHHHHhcCCCcceecCCCc--eEEEEeCCCCEEEEeeccCCc
Confidence 4677788888873 2222 27777777632 123345543 222 2678899999984 3456679
Q ss_pred hHHHhh
Q 009399 225 LFWAIR 230 (535)
Q Consensus 225 Lf~a~r 230 (535)
+|+++.
T Consensus 455 IwRmcq 460 (741)
T TIGR00178 455 IWRMCQ 460 (741)
T ss_pred chhhhh
Confidence 988877
No 67
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=24.23 E-value=1.1e+02 Score=27.68 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=25.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHhcCCeEEEE
Q 009399 79 EFIFTPLYESHVQAAVICSKQLGIHLRVR 107 (535)
Q Consensus 79 ~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ 107 (535)
..|+.|.+.+|+..+++.|-+.+-|+.+|
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~ir 153 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIR 153 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 35899999999999999999887788877
No 68
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=24.23 E-value=71 Score=32.92 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEE--eCCCC
Q 009399 85 LYESHVQAAVICSKQLGIHLRVR--SGGHD 112 (535)
Q Consensus 85 ~s~~dv~~~v~~a~~~~~~v~v~--ggGh~ 112 (535)
=|.+|++++|++|+++||.|++- .=||+
T Consensus 72 YT~~di~elv~yA~~rgI~vIPEiD~PGH~ 101 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPEIDMPGHT 101 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCcHHH
Confidence 48999999999999999999883 23665
No 69
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=23.99 E-value=44 Score=37.18 Aligned_cols=27 Identities=11% Similarity=0.372 Sum_probs=22.5
Q ss_pred hhhhhhhhhhHHHHHHhHhhcCCCCCcccC
Q 009399 495 AWGSRYFKDNFMRLVRVKTKVDPDNFFRHE 524 (535)
Q Consensus 495 ~~~~~yyG~n~~RL~~IK~kyDP~~vF~~~ 524 (535)
.+.+.| + +++-+++++++||+++|.|+
T Consensus 538 ~L~~~Y-P--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 538 RLRKRF-P--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHhhC-C--HHHHHHHHHHhCCCCccCCH
Confidence 455555 4 99999999999999999775
No 70
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=23.88 E-value=95 Score=26.08 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=36.8
Q ss_pred eecCCCCChhhHhhhccccccCCCCCCCCceE-EEEcCCHHHHHHHHHHHHhcCCeEEEEeCC
Q 009399 49 FCDQTNSSFGSILQSSAQNLRYLTPSMPKPEF-IFTPLYESHVQAAVICSKQLGIHLRVRSGG 110 (535)
Q Consensus 49 ~~~~~~~~y~~~~~~~~~n~r~~~~~~~~p~~-vv~P~s~~dv~~~v~~a~~~~~~v~v~ggG 110 (535)
.+-||=.+=+..+- .| .|.. +|.+.+..|+..++..|.++|+||.+.+.-
T Consensus 39 ~IKPGIgEaTRvLL-----RR-------vP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 39 LIKPGIGEATRVLL-----RR-------VPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred cccCChhHHHHHHH-----hc-------CCCEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 46677655555432 23 4554 577788899999999999999999998744
No 71
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=23.87 E-value=44 Score=36.84 Aligned_cols=26 Identities=8% Similarity=0.321 Sum_probs=20.9
Q ss_pred hhhhhhhhhHHHHHHhHhhcCCCCCcccC
Q 009399 496 WGSRYFKDNFMRLVRVKTKVDPDNFFRHE 524 (535)
Q Consensus 496 ~~~~yyG~n~~RL~~IK~kyDP~~vF~~~ 524 (535)
|.+.| + +++-++|++++||+++|.|+
T Consensus 509 l~~~Y-P--~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 509 LKKKF-P--VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHhhC-C--HHHHHHHHHHhCCCCccccH
Confidence 44444 3 78889999999999999875
No 72
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=23.73 E-value=74 Score=32.28 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=23.7
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEEE--eCCCC
Q 009399 84 PLYESHVQAAVICSKQLGIHLRVR--SGGHD 112 (535)
Q Consensus 84 P~s~~dv~~~v~~a~~~~~~v~v~--ggGh~ 112 (535)
.=|.+|++++|++|+++||.|+|- .=||.
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPEiD~PGH~ 98 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPEIDMPGHS 98 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEeccchHHH
Confidence 457799999999999999999873 33665
No 73
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=23.23 E-value=1.2e+02 Score=27.88 Aligned_cols=31 Identities=6% Similarity=0.021 Sum_probs=26.3
Q ss_pred eEEEEcCCHHHHHHHHHHHHh--cCCeEEEEeC
Q 009399 79 EFIFTPLYESHVQAAVICSKQ--LGIHLRVRSG 109 (535)
Q Consensus 79 ~~vv~P~s~~dv~~~v~~a~~--~~~~v~v~gg 109 (535)
..|+.|.+.+|+..+++.+-+ .+-|+.+|-.
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 568999999999999999999 5689988754
No 74
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=23.07 E-value=1.6e+02 Score=25.39 Aligned_cols=31 Identities=6% Similarity=-0.001 Sum_probs=28.4
Q ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCeEEEE
Q 009399 77 KPEFIFTPLYESHVQAAVICSKQLGIHLRVR 107 (535)
Q Consensus 77 ~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ 107 (535)
....|+...+++|+.++-+-|++.|++..++
T Consensus 55 ~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 55 MHKVVLEVPDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 7999999999999999999999999986663
No 75
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=22.85 E-value=2.8e+02 Score=30.08 Aligned_cols=137 Identities=20% Similarity=0.259 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCC--CCCe---EEcCC---CCeEEEeCCCc----H
Q 009399 87 ESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLAR--LRAI---SVDIE---SNSAWVQTGAT----I 154 (535)
Q Consensus 87 ~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~--~~~i---~~d~~---~~~v~v~aG~~----~ 154 (535)
.++|.+-+..+.+++--+.....-.+++....+.+ |++|-+- |=+- -.+.+ ..|--|-|--+ .
T Consensus 314 r~eI~~~~~~~~a~~p~laMVdS~kGItNlhvPSD-----VIVDASMPAMir~sg~mw~~dgk~kDTkAviPdstya~iY 388 (744)
T COG2838 314 RAEIEADIHAVYAHRPDLAMVDSDKGITNLHVPSD-----VIVDASMPAMIRNSGRMWGKDGKLKDTKAVIPDSTYAGIY 388 (744)
T ss_pred HHHHHHHHHHHHhcCCcceeeecccCcccccCCcc-----eeeeCCcHHHHhccccccCCccccccccccCcchhHHHHH
Confidence 35777778888887766777776666666666665 7787552 2110 12222 12333333333 3
Q ss_pred HHHHHHHHHcCCceeecCCCCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcEec-ccCCCcchHHHhhc
Q 009399 155 GEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILD-REAMGEDLFWAIRG 231 (535)
Q Consensus 155 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dLf~a~rG 231 (535)
.++++.+.++|--=+...|+.|.||+..-- .--+|.--..|-...|-+ ++||+++|+++- -..+--|+|.++..
T Consensus 389 q~vI~~ck~nGafdPttmGsVpNVGLMAqk-AeEYGSHdKTF~i~~dGv--~~vv~~~G~VLleh~Ve~gDiwR~cq~ 463 (744)
T COG2838 389 QEVIDFCKTNGAFDPTTMGTVPNVGLMAQK-AEEYGSHDKTFEIEADGV--VRVVDANGKVLLEHDVEAGDIWRMCQV 463 (744)
T ss_pred HHHHHHHHhcCCcCcccccCCCchHHHHHH-HHHhCCCCceEEecCCce--EEEEecCCcEeeecccccccHHHHHhc
Confidence 567778888873111123888888763221 111222222222333444 578899999983 34456788887763
No 76
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=22.75 E-value=1.8e+02 Score=24.89 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=30.7
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHhcCCeE-EEEeCCCC
Q 009399 76 PKPEFIFTPLYESHVQAAVICSKQLGIHL-RVRSGGHD 112 (535)
Q Consensus 76 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~v-~v~ggGh~ 112 (535)
..+..|+.+.+++++.++.+-|++.|++. .++-.|+.
T Consensus 46 G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 46 GQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred CCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 47999999999999999999999999874 44555554
No 77
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=22.59 E-value=72 Score=34.33 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=25.4
Q ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCeEEEE--eCCCC
Q 009399 77 KPEFIFTPLYESHVQAAVICSKQLGIHLRVR--SGGHD 112 (535)
Q Consensus 77 ~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~--ggGh~ 112 (535)
.|..|+ |.+||+++|++|+.+||+|.+- .-||.
T Consensus 242 s~~~vY---T~eDv~evV~yarlRGIRVlpEfD~PgHt 276 (542)
T KOG2499|consen 242 SPRHVY---TREDVSEVVEYARLRGIRVLPEFDTPGHT 276 (542)
T ss_pred Ccceee---cHHHHHHHHHHHHhccceeeecccCCccc
Confidence 455555 5599999999999999999874 34565
No 78
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=22.31 E-value=1.4e+02 Score=23.28 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=17.0
Q ss_pred EEEEcCCHHHHHHHHHHHHhc
Q 009399 80 FIFTPLYESHVQAAVICSKQL 100 (535)
Q Consensus 80 ~vv~P~s~~dv~~~v~~a~~~ 100 (535)
.++.|++-+|+.+++...++.
T Consensus 2 ~v~~p~~~~D~~~i~~~l~~g 22 (73)
T PF04472_consen 2 VVFEPKSFEDAREIVDALREG 22 (73)
T ss_dssp EEEE-SSGGGHHHHHHHHHTT
T ss_pred EEEeeCCHHHHHHHHHHHHcC
Confidence 478999999999999887763
No 79
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.58 E-value=87 Score=31.99 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEE--eCCCC
Q 009399 85 LYESHVQAAVICSKQLGIHLRVR--SGGHD 112 (535)
Q Consensus 85 ~s~~dv~~~v~~a~~~~~~v~v~--ggGh~ 112 (535)
-|.+|++++|++|+++||.|.+- .=||.
T Consensus 65 yT~~di~elv~yA~~rgI~vIPEId~PGH~ 94 (311)
T cd06570 65 YTQEQIREVVAYARDRGIRVVPEIDVPGHA 94 (311)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEeecCccch
Confidence 58999999999999999998873 33666
No 80
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=21.58 E-value=73 Score=32.73 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=23.5
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEE--EeCCCCC
Q 009399 84 PLYESHVQAAVICSKQLGIHLRV--RSGGHDY 113 (535)
Q Consensus 84 P~s~~dv~~~v~~a~~~~~~v~v--~ggGh~~ 113 (535)
.=|.+|++++|++|+++||.|+| -.=||.-
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPeid~PGH~~ 100 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPEIDTPGHAE 100 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEEEEESSS-H
T ss_pred cCCHHHHHHHHHHHHHcCCceeeeccCchHHH
Confidence 45789999999999999999987 3458873
No 81
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.54 E-value=86 Score=31.80 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=24.3
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEEE--eCCCC
Q 009399 84 PLYESHVQAAVICSKQLGIHLRVR--SGGHD 112 (535)
Q Consensus 84 P~s~~dv~~~v~~a~~~~~~v~v~--ggGh~ 112 (535)
+=|.+|+++++++|+++||.|+|- .=||.
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~ 86 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIPLIQTLGHL 86 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEecCCCHHHH
Confidence 469999999999999999999883 23665
No 82
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.60 E-value=91 Score=32.45 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHhcCCeEEEE--eCCCC
Q 009399 86 YESHVQAAVICSKQLGIHLRVR--SGGHD 112 (535)
Q Consensus 86 s~~dv~~~v~~a~~~~~~v~v~--ggGh~ 112 (535)
|.+|++++|++|+++||.|++- .=||.
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~ 112 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHA 112 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhH
Confidence 7999999999999999999884 33776
Done!