Query 009400
Match_columns 535
No_of_seqs 156 out of 229
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 12:39:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03164 Mon1: Trafficking pro 100.0 1E-108 2E-113 872.3 43.7 365 135-534 2-372 (415)
2 KOG0997 Uncharacterized conser 100.0 3E-103 7E-108 822.0 41.7 369 133-534 106-480 (523)
3 PF01217 Clat_adaptor_s: Clath 96.3 0.067 1.4E-06 49.1 12.1 77 145-221 3-80 (141)
4 PF08217 DUF1712: Fungal domai 95.1 0.24 5.1E-06 56.5 12.7 67 167-233 35-111 (604)
5 KOG0937 Adaptor complexes medi 82.7 11 0.00024 41.5 10.9 78 145-225 2-82 (424)
6 PF03259 Robl_LC7: Roadblock/L 78.9 24 0.00053 28.9 9.6 67 145-211 16-90 (91)
7 PF04099 Sybindin: Sybindin-li 77.9 61 0.0013 30.3 14.8 103 146-257 3-128 (142)
8 KOG3368 Transport protein part 75.1 38 0.00083 32.0 10.4 84 147-232 6-104 (140)
9 KOG3343 Vesicle coat complex C 70.1 77 0.0017 31.0 11.5 120 145-278 10-140 (175)
10 PF13774 Longin: Regulated-SNA 61.6 64 0.0014 26.8 8.4 58 177-234 5-62 (83)
11 KOG2635 Medium subunit of clat 50.1 1.4E+02 0.003 33.6 10.5 120 147-267 6-130 (512)
12 COG5122 TRS23 Transport protei 39.8 2.6E+02 0.0057 26.0 9.1 84 145-230 4-100 (134)
13 KOG0936 Clathrin adaptor compl 28.9 4.2E+02 0.009 25.9 8.9 111 145-267 3-124 (182)
14 PLN02673 quinolinate synthetas 26.6 1.8E+02 0.004 34.3 7.3 41 134-179 128-168 (724)
15 PRK11778 putative inner membra 26.1 37 0.00081 36.3 1.6 80 152-238 152-253 (330)
16 COG5030 APS2 Clathrin adaptor 24.3 6.5E+02 0.014 24.3 9.7 115 145-269 3-120 (152)
17 PF13421 Band_7_1: SPFH domain 20.4 1.1E+02 0.0024 30.5 3.6 36 308-343 24-59 (211)
No 1
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=100.00 E-value=1.1e-108 Score=872.29 Aligned_cols=365 Identities=45% Similarity=0.763 Sum_probs=347.2
Q ss_pred ccchhHHccCceEEEecCCCcceEeeCCCchhhhhhHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEeCC
Q 009400 135 DASISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCT 214 (535)
Q Consensus 135 ~~~~~w~~~~KH~FIlS~AGKPIYSryGdE~~ls~~mGvlqAIiSfve~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~ 214 (535)
+.+++|++|+|||||||+||||||||||||++++++||+||||||||++++|+|++|.+|+++|||+.|+||||||||++
T Consensus 2 ~~~~~~~~~~kh~fIlS~AGKPIysr~G~e~~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~ 81 (415)
T PF03164_consen 2 VHSEEWRKHKKHFFILSSAGKPIYSRYGDEDKLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKT 81 (415)
T ss_pred cchHHHHhcCCeEEEECCCCceeEEecCChHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhH-HHHHHhhhCCCCCcccCcCchHHHHHHHHHhcCCCh-hhhhcccccccCChhHHH
Q 009400 215 EEPYESLRGQLELLYGQMILILTK-SINRCFEKNPKFDMTPLLGGTDVVFSSLIHSFNWNP-ATFLHAYTCLPLAYATRQ 292 (535)
Q Consensus 215 ~Es~~~Lr~QL~~Ly~QIlSiLT~-~l~rif~krpNyDLRrLL~Gtd~~l~~Li~~~~~~p-~~lL~a~~cLpL~~s~R~ 292 (535)
+|++++|++||+|||.||+|+||. +|+|+|++||||||||+|+|||+++++++++++++| +++++|++||||+++.|+
T Consensus 82 ~e~~~~l~~qL~~ly~qils~lt~~~l~~~f~~r~n~DlR~lL~gtd~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~R~ 161 (415)
T PF03164_consen 82 GESESQLRKQLDYLYSQILSILTKPQLERIFEKRPNFDLRRLLGGTDRFLDSLLDSMNRSPPSFLLNALECLPLRPSIRD 161 (415)
T ss_pred cCCHHHHHHHHHHHHHHHHHhccHHHHHHHhccCCCcchhhhccchHHHHHHHHHHhcCChHHHHhhcceEEECCHHHHH
Confidence 999999999999999999999997 799999999999999999999999999999999998 889999999999999999
Q ss_pred HHHHHhhh--cCCCCeEEEEEeeCCeEEEeeccCCCcCCcccHHHHHHhhhcccccCCCCcccccccCCCCCCceEEEEE
Q 009400 293 AAGAVLQD--VADSGVLFALLMCKCKVVSLVGAQKASLHPDDMLLLSNFVMSSESFRTSESFSPICLPRYNPTAFLYAYV 370 (535)
Q Consensus 293 ~i~~iL~~--~~~~~lLfglL~a~~klVs~vrpK~~sLhp~DL~LL~N~V~ss~Sfr~~EsW~PICLP~FN~~GFLyaYV 370 (535)
+|+++|.. .+.+++|||+|+++||||+++|||+|+|||.||+||+|+|.++.+++++|+|+|||||+||++|||||||
T Consensus 162 ~i~~~l~~~~~~~~~llf~lL~~~~klv~~~~~k~~~L~~~Dl~lL~n~v~~~~~~~~~E~W~PICLP~FN~~GFLyayv 241 (415)
T PF03164_consen 162 KITSILLSCLNKRKDLLFGLLFANNKLVSVVRPKKHSLHPSDLHLLFNLVRSSSSFKSGESWIPICLPKFNPNGFLYAYV 241 (415)
T ss_pred HHHHHHHHhccCCCCcEEEEEEECCEEEEEEccCCCcCChHHHHHHHHHHhhccccCCCCceeccCCcccCCCceEEEEe
Confidence 99999998 7889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecC--CeEEEEecCCchhhhHhHHHHHHHHHHHHhcchHHHHHHHHHhcCcccccCCCCCCCCCCCCccchhhhhccC
Q 009400 371 HYFDA--DTYLMLLTTSSDAFYHLKDCRIRIEQVLLRSNVLSEVQRSMLEGGMRVEDLPVDPLPRSSMPHRLSQQRILTQ 448 (535)
Q Consensus 371 ~yl~~--~~~LVLiSt~~daF~~L~~~~~~I~~~L~~~~~l~~i~~al~~~~~~v~dip~~~~~~s~~~~~~~~~~~~~~ 448 (535)
+||++ ++||||||+++|+||+|++++++|+++|.+.|++++|.+++..+.
T Consensus 242 ~~l~~~~~~~lvLiS~~~~~F~~l~~~~~~i~~~L~~~~~~~~l~~~~~~~~---------------------------- 293 (415)
T PF03164_consen 242 SYLDEDSPVCLVLISTDKDAFFELSEAKDRIIDKLEESGCLEALISALSNSS---------------------------- 293 (415)
T ss_pred eeccCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhc----------------------------
Confidence 99999 899999999999999999999999999999999999998875520
Q ss_pred CCccccccccccCCCCceeEEEEeecCCceEEecCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEecCCeeE
Q 009400 449 SPEIFSESIVGIGGPTGLWHFIYRSIYLDQYVSSDFSPPISSPQQQKRLYRAYQKLYCSMHDKGIGPHKTQFRRDENYGK 528 (535)
Q Consensus 449 ~p~~ys~~~~~~~g~~~L~HFvYKsk~~~Q~vspe~~~py~~~~~~kRL~~~Yq~l~~~mh~~~~~p~kl~y~~~~~e~~ 528 (535)
.|+ +...|.|+|||||||+|+++||+||+|++||.++.+|+||+++||+||++||+.+ +++|++|++++++++
T Consensus 294 ---~~~---~~~ig~p~L~HFiYKsk~~~Q~~~p~~~~~~~~~~~~~rL~~~Y~~L~~~~h~~~-~~~k~~y~~~~~e~~ 366 (415)
T PF03164_consen 294 ---SYS---ISDIGIPELRHFIYKSKSNNQFVSPEFSPPYNSPDERKRLFRLYQKLHSSMHSSS-RPLKLIYRWTEKETG 366 (415)
T ss_pred ---CCC---cccCCCCceEEEEEEecCCCceeCCCCCCCCCChHHHHHHHHHHHHHHHHHhCCC-CCeeEEEEecCCcEE
Confidence 011 1122457999999999999999999999999999999999999999999999964 689999999999999
Q ss_pred EEEeec
Q 009400 529 FFFLMY 534 (535)
Q Consensus 529 l~WvT~ 534 (535)
|+|+|-
T Consensus 367 l~w~T~ 372 (415)
T PF03164_consen 367 LAWVTS 372 (415)
T ss_pred EEEEcC
Confidence 999984
No 2
>KOG0997 consensus Uncharacterized conserved protein Sand [Function unknown]
Probab=100.00 E-value=3.1e-103 Score=822.04 Aligned_cols=369 Identities=36% Similarity=0.610 Sum_probs=346.7
Q ss_pred ccccchhHHccCceEEEecCCCcceEeeCCCchhhhhhHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEe
Q 009400 133 EDDASISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCIS 212 (535)
Q Consensus 133 ed~~~~~w~~~~KH~FIlS~AGKPIYSryGdE~~ls~~mGvlqAIiSfve~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS 212 (535)
..+..+.|+.++|||||||+||||||||||+|++++++||+|||+|||||.+++.+++|.++++++|||.|+||+|||+|
T Consensus 106 ~~d~~e~~r~q~khifilseaGKPiyS~~gs~e~l~stmGv~~alISf~q~~~~~i~si~a~g~k~vfl~kspl~LvA~s 185 (523)
T KOG0997|consen 106 LNDLIEDWRLQKKHIFILSEAGKPIYSRHGSDEALSSTMGVMQALISFFQVSGLAITSIHAFGNKLVFLQKSPLLLVAVS 185 (523)
T ss_pred cchhhHHHHhCCceEEEEecCCCceeeecCcHHHHHHHHHHHHHHHHHHhhCCceEEEEEecCceEEEEecCcEEEEEEc
Confidence 33444999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhH-HHHHHhhhCCCCCcccCcCchHHHHHHHHHhcCCCh-hhhhcccccccCChhH
Q 009400 213 CTEEPYESLRGQLELLYGQMILILTK-SINRCFEKNPKFDMTPLLGGTDVVFSSLIHSFNWNP-ATFLHAYTCLPLAYAT 290 (535)
Q Consensus 213 ~~~Es~~~Lr~QL~~Ly~QIlSiLT~-~l~rif~krpNyDLRrLL~Gtd~~l~~Li~~~~~~p-~~lL~a~~cLpL~~s~ 290 (535)
+++++.+||..||++||.||+|+||+ ++.++|++|+||||||||+|+|++++++++.|+.+| .++++|++||||+++.
T Consensus 186 ~t~~Sa~qL~~qL~~ly~QIlS~LT~~ql~~if~~r~NfDLRrLL~gser~~~~ll~~~~~~~~~lllnsi~~lPl~~s~ 265 (523)
T KOG0997|consen 186 RTSQSAAQLLQQLLLLYCQILSILTASQLQRIFNKRQNFDLRRLLSGSERLLDNLLDSMNRDPLVLLLNSIRCLPLNSSF 265 (523)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHhcccHHHHHHHHHHHhhCcchhhhccceeccCChhH
Confidence 99999999999999999999999996 799999999999999999999999999999999998 5778999999999999
Q ss_pred HHHHHHHhhh--cCCCCeEEEEEeeCCeEEEeeccCCCcCCcccHHHHHHhhhcccccCCCCcccccccCCCCCCceEEE
Q 009400 291 RQAAGAVLQD--VADSGVLFALLMCKCKVVSLVGAQKASLHPDDMLLLSNFVMSSESFRTSESFSPICLPRYNPTAFLYA 368 (535)
Q Consensus 291 R~~i~~iL~~--~~~~~lLfglL~a~~klVs~vrpK~~sLhp~DL~LL~N~V~ss~Sfr~~EsW~PICLP~FN~~GFLya 368 (535)
|+++.+.|+. ++.+++|||+|+++|||||+||+|||.|||.|||||||+|.++++|+++|.|+|||||+||++||+||
T Consensus 266 Rd~Ls~~l~~~l~~~~~Llf~iliarnkLva~vr~kk~~LHp~DL~Llfnlvs~~~~~~s~E~WvPIClPkFN~~Gffya 345 (523)
T KOG0997|consen 266 RDQLSALLLSCLAKAKGLLFGILIARNKLVAMVRAKKYLLHPADLHLLFNLVSRQSLFDSSENWVPICLPKFNPDGFFYA 345 (523)
T ss_pred HHHHHHHHHHhhccCCccEEEEEEeCCeeEEEEeccccccChhhHHHHHHHhcccccccccccccceeccccCCCceEEE
Confidence 9999999988 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecC--CeEEEEecCCchhhhHhHHHHHHHHHHHHhcchHHHHHHHHHhcCcccccCCCCCCCCCCCCccchhhhhc
Q 009400 369 YVHYFDA--DTYLMLLTTSSDAFYHLKDCRIRIEQVLLRSNVLSEVQRSMLEGGMRVEDLPVDPLPRSSMPHRLSQQRIL 446 (535)
Q Consensus 369 YV~yl~~--~~~LVLiSt~~daF~~L~~~~~~I~~~L~~~~~l~~i~~al~~~~~~v~dip~~~~~~s~~~~~~~~~~~~ 446 (535)
||+||++ .+||||+|+++|+||.|++||++|+++|.+.|++.++..+... . ++
T Consensus 346 yisyL~~d~~vcllLls~~rdaFf~l~~~r~~i~~kL~~~~~l~~l~~~~~~---~----~~------------------ 400 (523)
T KOG0997|consen 346 YISYLCKDDPVCLLLLSVQRDAFFALKSVRRKIAEKLEKHGALKALNEAAEF---D----PN------------------ 400 (523)
T ss_pred EEeecCCCCCeEEEEEecchhHHHHHHHHHHHHHHHHHhcchHHHHHHHhcC---C----Cc------------------
Confidence 9999985 5799999999999999999999999999999999999876532 1 00
Q ss_pred cCCCccccccccccCCCCceeEEEEeecCCceEEecCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEecCCe
Q 009400 447 TQSPEIFSESIVGIGGPTGLWHFIYRSIYLDQYVSSDFSPPISSPQQQKRLYRAYQKLYCSMHDKGIGPHKTQFRRDENY 526 (535)
Q Consensus 447 ~~~p~~ys~~~~~~~g~~~L~HFvYKsk~~~Q~vspe~~~py~~~~~~kRL~~~Yq~l~~~mh~~~~~p~kl~y~~~~~e 526 (535)
| | ..+..+|.|.||||+||+|+..||+||+++.||.+.++|+||.+.|+++|+++|+++ +|+|++|.+.++|
T Consensus 401 ---~--~--~~~q~~g~p~l~HFLy~~ks~~q~~sp~le~p~~~~~erq~L~~~y~rl~~~l~s~s-~~l~~i~~~~e~e 472 (523)
T KOG0997|consen 401 ---P--Y--YYVQNVGSPCLRHFLYKSKSSAQFTSPGLEAPYKSETERQRLYAIYARLHSRLHSKS-RPLRTIYTVKEKE 472 (523)
T ss_pred ---c--c--eeeecCCCccchhheecccccchhcCccccCCcCChHHHHHHHHHHHHHhhhhhccC-CcceEEEEecCce
Confidence 0 0 012344678999999999999999999999999999999999999999999999985 7999999999999
Q ss_pred eEEEEeec
Q 009400 527 GKFFFLMY 534 (535)
Q Consensus 527 ~~l~WvT~ 534 (535)
++|||||.
T Consensus 473 ~llaWvT~ 480 (523)
T KOG0997|consen 473 VLLAWVTG 480 (523)
T ss_pred EEEEEecc
Confidence 99999995
No 3
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=96.32 E-value=0.067 Score=49.08 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=53.8
Q ss_pred ceEEEecCCCcceEeeCCCchhhhhhHHHHHHHHHHHHcCC-CceEEEEeCCeEEEEEecCCEEEEEEeCCCCCHHHH
Q 009400 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGK-DRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESL 221 (535)
Q Consensus 145 KH~FIlS~AGKPIYSryGdE~~ls~~mGvlqAIiSfve~~~-d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~L 221 (535)
+-+||++..||++++||=+......-......+.......+ +.-..+..+++++||...+.|+++++...+|.+-.+
T Consensus 3 ~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~ 80 (141)
T PF01217_consen 3 KAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSSRNSKQSPIFEHDNYRIVYKRYSDLYFVVVGDENENELLL 80 (141)
T ss_dssp EEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSSSSTSEEEETTEEEEEEEETTEEEEEEESSTSBHHHH
T ss_pred EEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHhcccccceeeecccceeeeEeeccEEEEEEeecccchHHH
Confidence 46899999999999997533222222334444444333332 334457789999999999999999999988877554
No 4
>PF08217 DUF1712: Fungal domain of unknown function (DUF1712); InterPro: IPR013176 The function of this fungal family of proteins is unknown.
Probab=95.09 E-value=0.24 Score=56.48 Aligned_cols=67 Identities=19% Similarity=0.317 Sum_probs=49.1
Q ss_pred hhhhHHHHHHHHHHHHc--CCCceEEEEeCCeEEEEEecCC-EEE-EEEeCC------CCCHHHHHHHHHHHHHHHH
Q 009400 167 LAGFSATLQAIISFVEN--GKDRIKLVRAGKHQVVFLIKGP-IYL-VCISCT------EEPYESLRGQLELLYGQMI 233 (535)
Q Consensus 167 ls~~mGvlqAIiSfve~--~~d~L~~I~ag~~~~VFL~r~P-L~L-VaVS~~------~Es~~~Lr~QL~~Ly~QIl 233 (535)
=...+|++|||++|.+. .++..+.|...++++||+.-.| +++ ++|... .-+...|+++|...|....
T Consensus 35 ql~~IGL~qglv~Ft~~Fs~~~~~~~I~T~K~r~v~~e~Ep~~Wi~l~I~~~~~~~~~~~~~~~L~~~L~~~Y~~F~ 111 (604)
T PF08217_consen 35 QLRQIGLAQGLVSFTRTFSPDDPCDSIHTEKSRIVFYEPEPGFWIVLSINLPKEQSTKDGPEQYLLSVLKQAYSMFR 111 (604)
T ss_pred HHHHhhHHHHHHHHHHhcCCCCcccceeecceEEEEEEecCCEEEEEEEecCcCCccccchHHHHHHHHHHHHHHHH
Confidence 34679999999999997 4556788999999999999988 554 344411 1233358888888886654
No 5
>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.70 E-value=11 Score=41.48 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=51.3
Q ss_pred ceEEEecCCCcceEeeC--CCchhhhhhHHHHHHHHHHHHcCCCceE-EEEeCCeEEEEEecCCEEEEEEeCCCCCHHHH
Q 009400 145 KHFFILSHSGKPIYSRY--GDEHKLAGFSATLQAIISFVENGKDRIK-LVRAGKHQVVFLIKGPIYLVCISCTEEPYESL 221 (535)
Q Consensus 145 KH~FIlS~AGKPIYSry--GdE~~ls~~mGvlqAIiSfve~~~d~L~-~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~L 221 (535)
+.+|||+.-|||+.+|. || .-++-.+...-...+.+ .+|... .+..++..+++....-||+|+.++.+-+...+
T Consensus 2 sa~fild~~G~~lisr~yr~d--v~~s~~~~F~~~l~~~e-~~~~~~p~l~~~g~~~~~ik~s~lylv~~~~~n~~a~~v 78 (424)
T KOG0937|consen 2 SAVFILDHKGEVLISRDYRGD--VPMSSTEKFFRKLFEKE-EGDESPPFLVHDGSRFIHIKHSNLYLVAGTRPNVSAALV 78 (424)
T ss_pred ceEEEEcCCCcEeEeeccccc--CChhhhhhHHHHHhhhc-ccCCCCCeEEeCCceEEEEeecceEEEEEeccCCCHHHH
Confidence 57999999999999884 44 21222233322333333 344333 55667889999999999999999777666554
Q ss_pred HHHH
Q 009400 222 RGQL 225 (535)
Q Consensus 222 r~QL 225 (535)
..-|
T Consensus 79 ~~~l 82 (424)
T KOG0937|consen 79 LSFL 82 (424)
T ss_pred HHHH
Confidence 4333
No 6
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=78.88 E-value=24 Score=28.95 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=41.1
Q ss_pred ceEEEecCCCcceEeeCCCchhhhhhHHHHHHHHHHH----Hc-CCCceEE--EEeCCeEEEEEecCC-EEEEEE
Q 009400 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFV----EN-GKDRIKL--VRAGKHQVVFLIKGP-IYLVCI 211 (535)
Q Consensus 145 KH~FIlS~AGKPIYSryGdE~~ls~~mGvlqAIiSfv----e~-~~d~L~~--I~ag~~~~VFL~r~P-L~LVaV 211 (535)
+.+.|++..|-||.+...+......+.+.+.++.... ++ +.++++. |+..++.+++..-++ .+||.+
T Consensus 16 ~~~~l~~~dG~~i~~~~~~~~~~~~~aa~~a~~~~~~~~~~~~l~~~~~~~v~i~~~~~~i~i~~~~~~~~L~v~ 90 (91)
T PF03259_consen 16 RGAVLVDKDGLVIASSGIDDDDAEKLAAMAASLLAAAEKLAKELGEGELEQVRIETEKGEIIITPVGDFYLLVVL 90 (91)
T ss_dssp EEEEEEETTSEEEEETSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEEEESSEEEEEEECSTCEEEEEE
T ss_pred eEEEEEcCCCCEEEEecCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEECCCEEEEEEcCCCEEEEEE
Confidence 4678999999999993333333333333333333322 21 3567765 567788888888888 566544
No 7
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=77.85 E-value=61 Score=30.27 Aligned_cols=103 Identities=18% Similarity=0.305 Sum_probs=56.0
Q ss_pred eEEEecCCCcceEeeC-C----------CchhhhhhHHHHHHHHHHHHc-----------CCCceEEEEeCCeEEEEEec
Q 009400 146 HFFILSHSGKPIYSRY-G----------DEHKLAGFSATLQAIISFVEN-----------GKDRIKLVRAGKHQVVFLIK 203 (535)
Q Consensus 146 H~FIlS~AGKPIYSry-G----------dE~~ls~~mGvlqAIiSfve~-----------~~d~L~~I~ag~~~~VFL~r 203 (535)
.|+|+..+|.-||.|- . +++..--+.|++..|=++... +.+.++.++++..++.++.-
T Consensus 3 slyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~eT 82 (142)
T PF04099_consen 3 SLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCFET 82 (142)
T ss_dssp EEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEEE-
T ss_pred EEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEEEc
Confidence 5899999999999873 1 123333456776666665542 12569999999999988775
Q ss_pred -CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhhCCCCCcccCcC
Q 009400 204 -GPIYLVCISCTEEPYESLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLG 257 (535)
Q Consensus 204 -~PL~LVaVS~~~Es~~~Lr~QL~~Ly~QIlSiLT~~l~rif~krpNyDLRrLL~ 257 (535)
.-+-+|+++...-+ .++..|..+|..+- .+.--|+|-|.+-..+.
T Consensus 83 ~TGlKFvl~td~~~~--~~~~~l~~~~~~lY-------~dyV~KNPfy~~~~pI~ 128 (142)
T PF04099_consen 83 PTGLKFVLITDPNVP--SLRDELLRIYYELY-------VDYVVKNPFYSLEMPIR 128 (142)
T ss_dssp TTS-EEEEEE-TTCC--HCHHHHHHHHHHHH-------HHHHHS-TTS-TTS---
T ss_pred CcCcEEEEEecCCCc--cHHHHHHHHHHHHH-------HHHHhhCCCCCCCCcEe
Confidence 46999999987542 23333333332222 12223778887755443
No 8
>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.13 E-value=38 Score=32.00 Aligned_cols=84 Identities=21% Similarity=0.327 Sum_probs=61.8
Q ss_pred EEEecCCCcceEee---------CCCchhhhhhHHHHHHHHHHHHc-----CCCceEEEEeCCeEEEEEecC-CEEEEEE
Q 009400 147 FFILSHSGKPIYSR---------YGDEHKLAGFSATLQAIISFVEN-----GKDRIKLVRAGKHQVVFLIKG-PIYLVCI 211 (535)
Q Consensus 147 ~FIlS~AGKPIYSr---------yGdE~~ls~~mGvlqAIiSfve~-----~~d~L~~I~ag~~~~VFL~r~-PL~LVaV 211 (535)
|.||+.-|-=+|-+ -+.|+.---..|.|-.|=||++. .+|...+++.+.-|+.|+.-. -|.+|-+
T Consensus 6 ~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeTptglk~vl~ 85 (140)
T KOG3368|consen 6 FYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGDVKDGFLSYKTSKYKLHFYETPTGLKFVLN 85 (140)
T ss_pred EEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCCcccCeeEEeeceeEEEEEEcCCCcEEEEe
Confidence 56666666666644 13444344457888888888873 467899999999999999875 5999999
Q ss_pred eCCCCCHHHHHHHHHHHHHHH
Q 009400 212 SCTEEPYESLRGQLELLYGQM 232 (535)
Q Consensus 212 S~~~Es~~~Lr~QL~~Ly~QI 232 (535)
+..+ ..-+|.-|+++|..+
T Consensus 86 Tdpk--~~~ir~vLq~IYs~l 104 (140)
T KOG3368|consen 86 TDPK--AGSIRDVLQYIYSHL 104 (140)
T ss_pred cCCC--cccHHHHHHHHHHHH
Confidence 8754 356888899999754
No 9
>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.13 E-value=77 Score=30.96 Aligned_cols=120 Identities=22% Similarity=0.362 Sum_probs=76.8
Q ss_pred ceEEEecCCCcceEeeCCCchhhhhhHHHHHHHHHH----HHc-CCCceEEEEeCCeEEEEEecCCEEEEEEeCCCCCHH
Q 009400 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISF----VEN-GKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYE 219 (535)
Q Consensus 145 KH~FIlS~AGKPIYSryGdE~~ls~~mGvlqAIiSf----ve~-~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~ 219 (535)
|.++||.+.||-||..|=++.-.+. +-.=-.| |.. ..-+-.-...+++.+|+..---|+|-.+....|.+-
T Consensus 10 k~iliLD~~G~Ri~aKYY~~~~~s~----vkeqkaFEK~lF~KT~kt~~eI~~ldg~~vvYk~~~Dl~fyv~G~~~ENEl 85 (175)
T KOG3343|consen 10 KAILILDSDGKRILAKYYDDPHPST----VKEQKAFEKNLFSKTSKTESEILLLDGNTVVYKSVIDLHFYVVGSEEENEL 85 (175)
T ss_pred heEEEEcCCCCEeeeeecCCCcchh----HHHHHHHHHHHhcccccccceeEEecCcEEEEEecccEEEEEecCcchhHH
Confidence 5699999999999999877765543 2222222 111 122222234577888888888899999999999888
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhhCCCCCcccCcCchHHHH---HHHHHh---cCCChhhhh
Q 009400 220 SLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGGTDVVF---SSLIHS---FNWNPATFL 278 (535)
Q Consensus 220 ~Lr~QL~~Ly~QIlSiLT~~l~rif~krpNyDLRrLL~Gtd~~l---~~Li~~---~~~~p~~lL 278 (535)
.|..-|.-+|.-+--+|-+.+ |=|.+|...|.++ +.+|+. ++.||....
T Consensus 86 ~L~svL~~l~dal~llLr~nv----------eKr~llEN~D~i~L~~DEiiD~GvILEtdp~~ia 140 (175)
T KOG3343|consen 86 MLMSVLTCLFDALSLLLRKNV----------EKRELLENLDLIFLALDEIIDGGVILETDPNQIA 140 (175)
T ss_pred HHHHHHHHHHHHHHHHHHhCh----------hHHHHHhhhccceeehhhhccCceEEecCHHHHH
Confidence 888888888877655554444 4455666666533 344543 455665543
No 10
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=61.64 E-value=64 Score=26.76 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=39.9
Q ss_pred HHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHh
Q 009400 177 IISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQMIL 234 (535)
Q Consensus 177 IiSfve~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~Lr~QL~~Ly~QIlS 234 (535)
|+.-+.-.++.-.++..|+..|.++..+.|+++||+...-+...--.-|+-|......
T Consensus 5 il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~ 62 (83)
T PF13774_consen 5 ILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQ 62 (83)
T ss_dssp HHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHH
Confidence 3333332333567888999999999999999999998877766555555555555443
No 11
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.11 E-value=1.4e+02 Score=33.55 Aligned_cols=120 Identities=22% Similarity=0.185 Sum_probs=74.3
Q ss_pred EEEecCCCcceEeeCCCchhhhhhHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEeCCCCCHHHHHHHHH
Q 009400 147 FFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLE 226 (535)
Q Consensus 147 ~FIlS~AGKPIYSryGdE~~ls~~mGvlqAIiSfve~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~Lr~QL~ 226 (535)
+-|.|-.||+|-||.--|---+-+-|.+.|....+.. +..=.++..+..|+|+-.=..||+|.|+..+-..-+=..-|+
T Consensus 6 a~i~t~~Gk~ivsRqf~~Msr~RIEgLl~aFpkLv~~-~~qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNIleDl~TL~ 84 (512)
T KOG2635|consen 6 ASINTKTGKAIVSRQFREMSRSRIEGLLAAFPKLVSA-GKQHTFVETDSVRYVYQPLDNLYIVLITTKQSNILEDLETLR 84 (512)
T ss_pred EEEeecCCceeeehHhHhhhHHHHHHHHHHhHHhhcc-CCCccEEecccEEEEEEecccEEEEEEeccccchhhHHHHHH
Confidence 4588999999999977665555555566555555543 233346777889999999999999999987533222223333
Q ss_pred HHHHHH---HhhhhH--HHHHHhhhCCCCCcccCcCchHHHHHHHH
Q 009400 227 LLYGQM---ILILTK--SINRCFEKNPKFDMTPLLGGTDVVFSSLI 267 (535)
Q Consensus 227 ~Ly~QI---lSiLT~--~l~rif~krpNyDLRrLL~Gtd~~l~~Li 267 (535)
++-..| ++.|-. .++..|+---.||=---|+--|.+...-|
T Consensus 85 Lfskvipey~~slde~eI~~~~FelifAFDEivsLGyre~v~laQi 130 (512)
T KOG2635|consen 85 LFSKVIPEYCSSLDEKEILENAFELIFAFDEIVSLGYRENVNLAQI 130 (512)
T ss_pred HHHHhchhhhhhhhHHHHHHhhhhhhhccchhhhhcccccccHHHh
Confidence 333322 233442 25666776677776555654444443333
No 12
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=39.81 E-value=2.6e+02 Score=26.02 Aligned_cols=84 Identities=23% Similarity=0.339 Sum_probs=51.3
Q ss_pred ceEEEecCCCcceEeeC-C-Cchhhhh-----hHHHHH---HHHHHHHc--CCCceEEEEeCCeEEEEE-ecCCEEEEEE
Q 009400 145 KHFFILSHSGKPIYSRY-G-DEHKLAG-----FSATLQ---AIISFVEN--GKDRIKLVRAGKHQVVFL-IKGPIYLVCI 211 (535)
Q Consensus 145 KH~FIlS~AGKPIYSry-G-dE~~ls~-----~mGvlq---AIiSfve~--~~d~L~~I~ag~~~~VFL-~r~PL~LVaV 211 (535)
.+|||...||--||-|. | +|.++.+ +.+++. ||.+-.-. +...++.+.+++..+..+ .-.-+-+|.|
T Consensus 4 e~~~iINksGglifqref~~~et~lnsneyLiLastlhgV~aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~kFV~~ 83 (134)
T COG5122 4 EQFFIINKSGGLIFQREFGEGETELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKFVFV 83 (134)
T ss_pred eEEEEEecCCcEEEEEeccCCccccCcccEEEEeechhhhhhhhhhcccCCCCCceEEEEeccEEEEEEEecCCcEEEEE
Confidence 37999999999999885 4 4444544 334433 44443333 345677788888765544 4456888898
Q ss_pred eCCCCCHHHHHHHHHHHHH
Q 009400 212 SCTEEPYESLRGQLELLYG 230 (535)
Q Consensus 212 S~~~Es~~~Lr~QL~~Ly~ 230 (535)
+..... -++-||.-+|.
T Consensus 84 ~~k~t~--na~~ql~kiY~ 100 (134)
T COG5122 84 AEKRTV--NALFQLQKIYS 100 (134)
T ss_pred ecCCch--hHHHHHHHHHH
Confidence 844333 34445544443
No 13
>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.89 E-value=4.2e+02 Score=25.95 Aligned_cols=111 Identities=20% Similarity=0.442 Sum_probs=68.1
Q ss_pred ceEEEecCCCcceEeeC---CCchhhhhhHHHHHHHHH--------HHHcCCCceEEEEeCCeEEEEEecCCEEEEEEeC
Q 009400 145 KHFFILSHSGKPIYSRY---GDEHKLAGFSATLQAIIS--------FVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISC 213 (535)
Q Consensus 145 KH~FIlS~AGKPIYSry---GdE~~ls~~mGvlqAIiS--------fve~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~ 213 (535)
|-++||..-|||=.+++ -+|++---+.+-.-.++| |.+. ++.+ .-.+.|+++-+-.-||||-|-.
T Consensus 3 ~AvlifNn~gkPRL~KFY~p~~~~~Qq~lir~vf~lvs~R~~n~~nFLe~-~~l~---g~~d~rlIYrhYATLYFvfvvD 78 (182)
T KOG0936|consen 3 KAVLIFNNKGKPRLVKFYTPVDEEKQQQLIREVFHLVSKRPDNVCNFLEG-NSLI---GGSDNRLIYRHYATLYFVFVVD 78 (182)
T ss_pred eEEEEecCCCCcceeeecCcCChHHHHHHHHHHHHHHHcCCchHhhhhcc-cccc---CCccceeehheeeeEEEEEEEc
Confidence 56899999999976653 355443334444444444 2221 2211 1126789998889999999887
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhhCCCCCcccCcCchHHHHHHHH
Q 009400 214 TEEPYESLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGGTDVVFSSLI 267 (535)
Q Consensus 214 ~~Es~~~Lr~QL~~Ly~QIlSiLT~~l~rif~krpNyDLRrLL~Gtd~~l~~Li 267 (535)
.+|++- ..|+++ -++-.+|+|+|++==-.||---......++..++
T Consensus 79 ~sEsEL---~iLDLI-----QvfVEtLDkCF~nVcELDliF~~~k~h~iL~EiV 124 (182)
T KOG0936|consen 79 SSESEL---GILDLI-----QVFVETLDKCFENVCELDLIFNWQKVHAILAEIV 124 (182)
T ss_pred CCcchh---HHHHHH-----HHHHHHHHHHHHhhhhhhheeeHHHHHHHHHHHH
Confidence 777663 334443 3556789999987766666554444444554444
No 14
>PLN02673 quinolinate synthetase A
Probab=26.61 E-value=1.8e+02 Score=34.29 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=24.8
Q ss_pred cccchhHHccCceEEEecCCCcceEeeCCCchhhhhhHHHHHHHHH
Q 009400 134 DDASISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIIS 179 (535)
Q Consensus 134 d~~~~~w~~~~KH~FIlS~AGKPIYSryGdE~~ls~~mGvlqAIiS 179 (535)
...+.-|..- -+...||-.|.-+-|-..+-||+++|.++++
T Consensus 128 GCQSqVWL~~-----eldddGkv~F~ADSDA~IVKGL~ALLl~~ls 168 (724)
T PLN02673 128 GCTAQVWLEA-----ELDQDGKMRFWADSDSEITKGFCSCLIWVLD 168 (724)
T ss_pred CcccceEEEE-----EEcCCCEEEEEEeCccHHHHHHHHHHHHHHc
Confidence 4456666421 1345687666655566667788888776654
No 15
>PRK11778 putative inner membrane peptidase; Provisional
Probab=26.11 E-value=37 Score=36.34 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=47.3
Q ss_pred CCCcceEeeCCCchhhhhhH-------------------HHHHHHHH---HHHcCCCceEEEEeCCeEEEEEecCCEEEE
Q 009400 152 HSGKPIYSRYGDEHKLAGFS-------------------ATLQAIIS---FVENGKDRIKLVRAGKHQVVFLIKGPIYLV 209 (535)
Q Consensus 152 ~AGKPIYSryGdE~~ls~~m-------------------GvlqAIiS---fve~~~d~L~~I~ag~~~~VFL~r~PL~LV 209 (535)
.+||||+...++-....+|+ |++..... +.+..|=+.+.+++|+.|=..-.=+|
T Consensus 152 ~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~---- 227 (330)
T PRK11778 152 DAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGE---- 227 (330)
T ss_pred hcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCC----
Confidence 46899998776655444443 22222222 22344556677888876522111112
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhhhhH
Q 009400 210 CISCTEEPYESLRGQLELLYGQMILILTK 238 (535)
Q Consensus 210 aVS~~~Es~~~Lr~QL~~Ly~QIlSiLT~ 238 (535)
.+.|.-++++..|+-+|.+++..+..
T Consensus 228 ---~see~Re~~q~~Ld~~y~~F~~~Va~ 253 (330)
T PRK11778 228 ---NTEEGREKFREELEETHQLFKDFVQR 253 (330)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 14455568899999999999887764
No 16
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]
Probab=24.31 E-value=6.5e+02 Score=24.28 Aligned_cols=115 Identities=17% Similarity=0.265 Sum_probs=75.1
Q ss_pred ceEEEecCCCcceEeeC---CCchhhhhhHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEeCCCCCHHHH
Q 009400 145 KHFFILSHSGKPIYSRY---GDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESL 221 (535)
Q Consensus 145 KH~FIlS~AGKPIYSry---GdE~~ls~~mGvlqAIiSfve~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~L 221 (535)
|-++|++.-|||=-+++ -|+.+=+-+.+=+..+||--.. ++-..+...++++||-.=+.||+|++-...+++-
T Consensus 3 ~~vli~nrqgk~RL~K~yt~~~~~e~~kli~~i~~lIs~R~~--ke~N~~e~k~~kiVYrrYA~LyF~f~Vd~~dnEl-- 78 (152)
T COG5030 3 KFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELISARKP--KESNFIEGKNEKIVYRRYATLYFVFGVDNDDNEL-- 78 (152)
T ss_pred EEEEEEcCCCceeeeEeeccCCcHHHHHHHHHHHHHHHcCCc--hhcccccccCcEEEeeecCcEEEEEEEcCCCCcc--
Confidence 45899999999987775 2444444467777777774311 1222334455699999999999998876655442
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhhhCCCCCcccCcCchHHHHHHHHHh
Q 009400 222 RGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGGTDVVFSSLIHS 269 (535)
Q Consensus 222 r~QL~~Ly~QIlSiLT~~l~rif~krpNyDLRrLL~Gtd~~l~~Li~~ 269 (535)
.-|+++|. +-..++|.|.+==-.||=---.-+..+++.++-.
T Consensus 79 -~iL~lIh~-----FVE~lDr~FgnVCELdlIFNF~kv~~ILdE~i~g 120 (152)
T COG5030 79 -IILELIHN-----FVEILDRFFGNVCELDLIFNFQKVYAILDEMILG 120 (152)
T ss_pred -hHHHHHHH-----HHHHHHHHhccceeeEeEeeHHHHHHHHHHHHhC
Confidence 23455443 2345788888777777766666677777777654
No 17
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=20.43 E-value=1.1e+02 Score=30.52 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=31.3
Q ss_pred EEEEeeCCeEEEeeccCCCcCCcccHHHHHHhhhcc
Q 009400 308 FALLMCKCKVVSLVGAQKASLHPDDMLLLSNFVMSS 343 (535)
Q Consensus 308 fglL~a~~klVs~vrpK~~sLhp~DL~LL~N~V~ss 343 (535)
.++++.+||++.+.+|-.|+|.+.++-+|-+++...
T Consensus 24 ~Avfv~~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~ 59 (211)
T PF13421_consen 24 CAVFVNDGKIADVFGPGRYTLDTDNIPILSTLKNWK 59 (211)
T ss_pred EEEEEECCEEEEEecCceEEEecCCchHHHHHhhhc
Confidence 467789999999999999999999999998876543
Done!