Query 009401
Match_columns 535
No_of_seqs 394 out of 1531
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 04:22:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oss_A HUNK1 protein, bromodom 100.0 1.8E-28 6.2E-33 220.6 12.3 105 150-254 19-123 (127)
2 3g0l_A Hwalp4, bromodomain adj 100.0 3.4E-28 1.2E-32 215.7 12.8 104 151-256 12-115 (117)
3 2ouo_A HUNK1 protein, bromodom 100.0 1.8E-28 6E-33 221.6 11.1 106 149-254 19-127 (130)
4 3d7c_A General control of amin 99.9 8.1E-28 2.8E-32 211.7 12.6 102 151-254 6-107 (112)
5 2d9e_A Peregrin; four-helix bu 99.9 1.3E-27 4.4E-32 213.3 14.0 108 151-260 6-113 (121)
6 3p1f_A CREB-binding protein; s 99.9 1.1E-27 3.8E-32 213.0 13.5 108 151-258 10-118 (119)
7 3jvl_A Bromodomain-containing 99.9 3.7E-28 1.3E-32 216.4 9.4 106 150-255 7-115 (120)
8 3q2e_A Bromodomain and WD repe 99.9 1.8E-27 6.2E-32 212.9 13.4 107 151-259 9-116 (123)
9 1e6i_A Transcriptional activat 99.9 9.3E-28 3.2E-32 214.2 10.2 103 152-256 13-115 (121)
10 3mb3_A PH-interacting protein; 99.9 3E-27 1E-31 214.8 13.3 107 151-259 20-127 (135)
11 4alg_A Bromodomain-containing 99.9 2.1E-27 7.3E-32 220.4 12.2 105 150-254 30-134 (154)
12 3fkm_X Signaling protein; brom 99.9 3.3E-27 1.1E-31 221.7 12.7 107 149-255 18-124 (166)
13 2i7k_A Bromodomain-containing 99.9 5E-27 1.7E-31 208.3 12.9 103 150-254 6-108 (117)
14 2dat_A Possible global transcr 99.9 3.8E-27 1.3E-31 210.9 11.6 103 150-254 11-119 (123)
15 3nxb_A CAT eye syndrome critic 99.9 5.1E-27 1.7E-31 207.8 12.2 101 151-253 15-115 (116)
16 3rcw_A Bromodomain-containing 99.9 1.3E-26 4.5E-31 210.5 14.6 108 151-260 12-119 (135)
17 2grc_A Probable global transcr 99.9 7.8E-27 2.7E-31 210.5 12.5 105 151-257 10-121 (129)
18 3mqm_A Probable histone-lysine 99.9 1.8E-26 6E-31 207.3 13.6 109 151-261 8-122 (126)
19 3hme_A Bromodomain-containing 99.9 1.5E-26 5.2E-31 207.0 12.7 103 151-255 12-114 (123)
20 2yyn_A Transcription intermedi 99.9 1.9E-26 6.6E-31 209.5 13.1 104 150-256 18-123 (135)
21 3iu5_A Protein polybromo-1; PB 99.9 1.2E-26 4.2E-31 205.4 11.4 103 152-256 5-113 (116)
22 3mb4_A Protein polybromo-1; PB 99.9 1.1E-26 3.8E-31 208.1 11.2 103 151-255 14-122 (124)
23 3ljw_A Protein polybromo-1; al 99.9 2.1E-26 7.3E-31 205.1 12.8 105 151-257 7-117 (120)
24 3k2j_A Protein polybromo-1; PB 99.9 4E-26 1.4E-30 206.1 13.1 106 150-257 15-126 (130)
25 3uv4_A Second bromodomain of h 99.9 2E-25 6.7E-30 208.0 12.4 107 153-261 30-137 (158)
26 2ri7_A Nucleosome-remodeling f 99.9 3.2E-25 1.1E-29 209.3 10.4 103 150-254 70-172 (174)
27 3tlp_A Protein polybromo-1; PB 99.9 5.3E-25 1.8E-29 203.4 11.3 104 152-257 24-134 (150)
28 3dai_A ATPase family AAA domai 99.9 2.2E-24 7.6E-29 194.7 13.0 100 151-252 9-112 (130)
29 3o36_A Transcription intermedi 99.9 1.4E-24 5E-29 206.8 11.5 103 150-255 79-183 (184)
30 3uv5_A Transcription initiatio 99.9 8.5E-24 2.9E-28 212.5 13.0 108 151-260 13-120 (265)
31 3uv5_A Transcription initiatio 99.9 6.4E-24 2.2E-28 213.4 11.5 107 152-260 136-243 (265)
32 2ro1_A Transcription intermedi 99.9 5.2E-24 1.8E-28 203.9 9.2 100 150-256 74-178 (189)
33 2dkw_A Hypothetical protein KI 99.9 2E-23 6.7E-28 188.7 12.3 95 151-252 11-109 (131)
34 3u5n_A E3 ubiquitin-protein li 99.9 2E-23 6.7E-28 202.6 12.0 105 149-256 78-202 (207)
35 3aad_A Transcription initiatio 99.9 4.9E-23 1.7E-27 209.7 11.3 107 151-259 46-152 (292)
36 2r0y_A Chromatin structure-rem 99.9 5.9E-22 2E-26 203.3 14.3 86 167-254 178-263 (311)
37 3aad_A Transcription initiatio 99.9 4.9E-22 1.7E-26 202.3 13.3 103 156-260 173-276 (292)
38 2r10_A Chromatin structure-rem 99.8 2.1E-21 7.2E-26 203.1 10.0 86 167-254 228-313 (361)
39 2r10_A Chromatin structure-rem 99.8 7E-20 2.4E-24 191.6 8.6 100 151-254 77-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 1.2E-19 4.1E-24 186.1 8.5 100 151-254 27-129 (311)
41 2jns_A Bromodomain-containing 99.8 1.7E-19 5.7E-24 152.6 3.1 72 350-421 12-84 (90)
42 3iu6_A Protein polybromo-1; PB 99.7 1.4E-17 4.7E-22 151.9 13.8 101 151-257 6-112 (147)
43 3lqh_A Histone-lysine N-methyl 99.6 5E-15 1.7E-19 140.6 8.0 96 151-259 74-169 (183)
44 2lm0_A AF4/FMR2 family member 95.8 0.041 1.4E-06 48.0 8.9 62 354-416 57-119 (125)
45 1td6_A F10_ORF294, hypothetica 51.2 3.2 0.00011 40.3 0.0 11 409-419 264-274 (306)
46 1gk7_A Vimentin; intermediate 27.2 66 0.0023 22.3 3.6 24 92-115 5-28 (39)
47 2x1l_A Methionyl-tRNA syntheta 23.7 18 0.00063 38.6 0.3 23 15-37 4-26 (524)
No 1
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.95 E-value=1.8e-28 Score=220.63 Aligned_cols=105 Identities=32% Similarity=0.564 Sum_probs=100.0
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhh
Q 009401 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 229 (535)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~Y 229 (535)
...+...|..||..|++++.+|+|..||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 19 ~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 98 (127)
T 2oss_A 19 TNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIY 98 (127)
T ss_dssp CHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999999987779999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 009401 230 NPKDHEVHIIAEQFLARFEELFRPI 254 (535)
Q Consensus 230 N~~~s~v~~~A~~L~~~Fe~~~~~i 254 (535)
|++++.||.+|..|++.|++.|+.+
T Consensus 99 N~~~s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 99 NKPGDDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999998754
No 2
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.95 E-value=3.4e-28 Score=215.69 Aligned_cols=104 Identities=32% Similarity=0.520 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009401 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
...++.|..||..|++++.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 12 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (117)
T 3g0l_A 12 SKDLALCSMILTEMETHEDAWPFLLPVNLKL--VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFN 89 (117)
T ss_dssp TTHHHHHHHHHHHHHTSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCcCChhh--cCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4578999999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009401 231 PKDHEVHIIAEQFLARFEELFRPINE 256 (535)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~ 256 (535)
++++.||.+|..|++.|++.|++++.
T Consensus 90 ~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 90 EDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999998864
No 3
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.95 E-value=1.8e-28 Score=221.58 Aligned_cols=106 Identities=43% Similarity=0.727 Sum_probs=100.8
Q ss_pred CcHHHHHHHHHHHHHHHcCCC---CCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 009401 149 DNGKLMKNCGQILTKLMKHKL---GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNN 225 (535)
Q Consensus 149 ~~~~~~k~c~~iL~~L~~~k~---s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~N 225 (535)
.....+++|..||..|+.+++ +|+|..||++..+++||||++|++||||+||++||++|.|.++.+|..||+|||.|
T Consensus 19 ~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 98 (130)
T 2ouo_A 19 KVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSN 98 (130)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 346788999999999999885 89999999999888999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 009401 226 AMTYNPKDHEVHIIAEQFLARFEELFRPI 254 (535)
Q Consensus 226 a~~YN~~~s~v~~~A~~L~~~Fe~~~~~i 254 (535)
|++||++++.||.+|..|++.|++.|+.+
T Consensus 99 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 99 CYKYNPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999765
No 4
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.95 E-value=8.1e-28 Score=211.73 Aligned_cols=102 Identities=26% Similarity=0.418 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009401 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
..|...|..||..|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 6 ~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 83 (112)
T 3d7c_A 6 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYN 83 (112)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCCchhhcCCCCccc--ccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHC
Confidence 6789999999999999999999999999876 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 009401 231 PKDHEVHIIAEQFLARFEELFRPI 254 (535)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i 254 (535)
++++.+|.+|..|++.|++.|+++
T Consensus 84 ~~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 84 PPDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999998764
No 5
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=213.33 Aligned_cols=108 Identities=27% Similarity=0.377 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009401 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
..+...|..||..|++++.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLSE--VPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYN 83 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHcCCccHhhCCcCCccc--cCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4678899999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009401 231 PKDHEVHIIAEQFLARFEELFRPINEKLMQ 260 (535)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~ 260 (535)
++++.+|.+|..|++.|+.+|..+...++.
T Consensus 84 ~~~s~~~~~A~~L~~~~~~~l~~~~~~~~~ 113 (121)
T 2d9e_A 84 AKDTIFYRAAVRLREQGGAVLRQARRQAEK 113 (121)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887753
No 6
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.95 E-value=1.1e-27 Score=212.99 Aligned_cols=108 Identities=35% Similarity=0.551 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHc-CCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhh
Q 009401 151 GKLMKNCGQILTKLMK-HKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 229 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~-~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~Y 229 (535)
.++++.|..+|..|++ ++.+|+|..||++..+++||||++|++||||+||++||++|.|.++.+|..||+|||.||++|
T Consensus 10 ~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 89 (119)
T 3p1f_A 10 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLY 89 (119)
T ss_dssp HHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 7799999999999998 679999999999997779999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 009401 230 NPKDHEVHIIAEQFLARFEELFRPINEKL 258 (535)
Q Consensus 230 N~~~s~v~~~A~~L~~~Fe~~~~~i~~~~ 258 (535)
|++++.||.+|..|++.|++.|..+...+
T Consensus 90 N~~~s~i~~~A~~L~~~f~~~~~~~~~~l 118 (119)
T 3p1f_A 90 NRKTSRVYKFCSKLAEVFEQEIDPVMQSL 118 (119)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999987654
No 7
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.95 E-value=3.7e-28 Score=216.40 Aligned_cols=106 Identities=43% Similarity=0.723 Sum_probs=101.6
Q ss_pred cHHHHHHHHHHHHHHHcCCC---CCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhH
Q 009401 150 NGKLMKNCGQILTKLMKHKL---GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNA 226 (535)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k~---s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na 226 (535)
..+++++|..||..|+.++. +|+|..||++..+++||||++|++||||+||++||++|.|.++.+|..||+|||.||
T Consensus 7 ~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 86 (120)
T 3jvl_A 7 ISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNC 86 (120)
T ss_dssp SCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999988 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009401 227 MTYNPKDHEVHIIAEQFLARFEELFRPIN 255 (535)
Q Consensus 227 ~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (535)
++||++++.||.+|..|++.|++.|+.+.
T Consensus 87 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~p 115 (120)
T 3jvl_A 87 YKYNPPDHEVVAMARKLQDVFEMRFAKMP 115 (120)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999987654
No 8
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=212.92 Aligned_cols=107 Identities=35% Similarity=0.622 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009401 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
..|+++|..||..|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|+.||+|||.||++||
T Consensus 9 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCEDSEPFRQPVDLVE--YPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp -CHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5699999999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009401 231 PK-DHEVHIIAEQFLARFEELFRPINEKLM 259 (535)
Q Consensus 231 ~~-~s~v~~~A~~L~~~Fe~~~~~i~~~~~ 259 (535)
++ ++.||.+|..|++.|++.|+.+...+.
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 999999999999999999999988774
No 9
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.94 E-value=9.3e-28 Score=214.24 Aligned_cols=103 Identities=35% Similarity=0.507 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCC
Q 009401 152 KLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNP 231 (535)
Q Consensus 152 ~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~ 231 (535)
.+.+.|..||..|++|+.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||+
T Consensus 13 ~~~~~~~~il~~l~~~~~a~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 90 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHAAAWPFLQPVNKEE--VPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNG 90 (121)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCCchhhCCCCChhh--CcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 457899999999999999999999999876 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q 009401 232 KDHEVHIIAEQFLARFEELFRPINE 256 (535)
Q Consensus 232 ~~s~v~~~A~~L~~~Fe~~~~~i~~ 256 (535)
+++.+|.+|..|++.|++.|+.+..
T Consensus 91 ~~s~i~~~A~~L~~~f~~~~~~~p~ 115 (121)
T 1e6i_A 91 ENTSYYKYANRLEKFFNNKVKEIPE 115 (121)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTSGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999987643
No 10
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.94 E-value=3e-27 Score=214.77 Aligned_cols=107 Identities=31% Similarity=0.539 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009401 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
..|++.|..||..|++++.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|+.||+|||.||++||
T Consensus 20 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCEDSEPFRQPVDLLE--YPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp STHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChhh--CCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5699999999999999999999999999866 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009401 231 PK-DHEVHIIAEQFLARFEELFRPINEKLM 259 (535)
Q Consensus 231 ~~-~s~v~~~A~~L~~~Fe~~~~~i~~~~~ 259 (535)
++ ++.||.+|..|++.|++.|..+...+.
T Consensus 98 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 127 (135)
T 3mb3_A 98 PSKRSRIYSMSLRLSAFFEEHISSVLSDYK 127 (135)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 999999999999999999999988775
No 11
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.94 E-value=2.1e-27 Score=220.40 Aligned_cols=105 Identities=30% Similarity=0.524 Sum_probs=100.7
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhh
Q 009401 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 229 (535)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~Y 229 (535)
...+...|..||+.|++++.+|+|..||++..+++||||++|++||||+||++||+++.|.++.+|+.||+|||.||++|
T Consensus 30 t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~Y 109 (154)
T 4alg_A 30 TNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIY 109 (154)
T ss_dssp BHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 37788889999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 009401 230 NPKDHEVHIIAEQFLARFEELFRPI 254 (535)
Q Consensus 230 N~~~s~v~~~A~~L~~~Fe~~~~~i 254 (535)
|++++.||.+|..|++.|++.|+.+
T Consensus 110 N~~~s~i~~~A~~L~~~f~~~~~~l 134 (154)
T 4alg_A 110 NKPTDDIVLMAQTLEKIFLQKVASM 134 (154)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999998765
No 12
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=3.3e-27 Score=221.71 Aligned_cols=107 Identities=33% Similarity=0.509 Sum_probs=98.7
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhh
Q 009401 149 DNGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 228 (535)
Q Consensus 149 ~~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~ 228 (535)
....|.+.|..||..|++++.+|+|..||++..+++||||++|++||||+||++||.++.|.++.+|+.||+|||.||++
T Consensus 18 ~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 97 (166)
T 3fkm_X 18 GNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSL 97 (166)
T ss_dssp TTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44789999999999999999999999999998778999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009401 229 YNPKDHEVHIIAEQFLARFEELFRPIN 255 (535)
Q Consensus 229 YN~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (535)
||++++.||.+|..|++.|++.|+.+.
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 98 YNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp SSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999998764
No 13
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.94 E-value=5e-27 Score=208.33 Aligned_cols=103 Identities=26% Similarity=0.350 Sum_probs=98.7
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhh
Q 009401 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 229 (535)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~Y 229 (535)
...+.+.|..||..|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||++|
T Consensus 6 ~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~--~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~y 83 (117)
T 2i7k_A 6 QTPLQEALNQLMRQLQRKDPSAFFSFPVTDFI--APGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIY 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTT--SSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcccHHhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999865 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 009401 230 NPKDHEVHIIAEQFLARFEELFRPI 254 (535)
Q Consensus 230 N~~~s~v~~~A~~L~~~Fe~~~~~i 254 (535)
|++++.+|.+|..|++.|+++|...
T Consensus 84 N~~~s~i~~~A~~L~~~f~~~~~~~ 108 (117)
T 2i7k_A 84 NKPETIYYKAAKKLLHSGMKILSQE 108 (117)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765
No 14
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=3.8e-27 Score=210.88 Aligned_cols=103 Identities=23% Similarity=0.360 Sum_probs=97.5
Q ss_pred cHHHHHHHHHHHHHHHcCC------CCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 009401 150 NGKLMKNCGQILTKLMKHK------LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTF 223 (535)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k------~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif 223 (535)
...+.+.|..||+.|++++ .+|+|..||+... +||||++|++||||+||++||+++.|.++.+|.+||+|||
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTT--SCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3678999999999999987 4899999999876 9999999999999999999999999999999999999999
Q ss_pred HhHhhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 009401 224 NNAMTYNPKDHEVHIIAEQFLARFEELFRPI 254 (535)
Q Consensus 224 ~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i 254 (535)
.||++||++++.||.+|..|++.|++.++.+
T Consensus 89 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 89 HNAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999988754
No 15
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.94 E-value=5.1e-27 Score=207.84 Aligned_cols=101 Identities=27% Similarity=0.442 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009401 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
..+.+.|..||..|++++.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|+.||+|||.||++||
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 92 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDESY--APNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYN 92 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChhh--ccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4478999999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 009401 231 PKDHEVHIIAEQFLARFEELFRP 253 (535)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~ 253 (535)
++++.||.+|..|++.|++.|.+
T Consensus 93 ~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 93 GESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998863
No 16
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=210.54 Aligned_cols=108 Identities=26% Similarity=0.394 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009401 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
..+...|..||..|++++.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 12 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (135)
T 3rcw_A 12 TPLTVLLRSVLDQLQDKDPARIFAQPVSLKE--VPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYN 89 (135)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhCCcchhhcCCCChhh--cCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5689999999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009401 231 PKDHEVHIIAEQFLARFEELFRPINEKLMQ 260 (535)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~ 260 (535)
++++.+|.+|..|++.|++.|+.+...++.
T Consensus 90 ~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~ 119 (135)
T 3rcw_A 90 ARDTVFYRAAVRLRDQGGVVLRQARREVDS 119 (135)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877753
No 17
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.94 E-value=7.8e-27 Score=210.51 Aligned_cols=105 Identities=24% Similarity=0.374 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHcCC-------CCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 009401 151 GKLMKNCGQILTKLMKHK-------LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTF 223 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k-------~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif 223 (535)
..+.+.|..||..|++++ .+++|..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||
T Consensus 10 ~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 10 PNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLC 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 678999999999999886 4899999999876 9999999999999999999999999999999999999999
Q ss_pred HhHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009401 224 NNAMTYNPKDHEVHIIAEQFLARFEELFRPINEK 257 (535)
Q Consensus 224 ~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 257 (535)
.||++||++++.||.+|..|++.|++.|+.+...
T Consensus 88 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 88 QNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999888654
No 18
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=207.29 Aligned_cols=109 Identities=18% Similarity=0.229 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHcCCC------CCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009401 151 GKLMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFN 224 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~------s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~ 224 (535)
..+.+.|..|++.|++++. +|+|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 85 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKK--NADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFR 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGG--CTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999764 999999999986 99999999999999999999999999999999999999999
Q ss_pred hHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009401 225 NAMTYNPKDHEVHIIAEQFLARFEELFRPINEKLMQE 261 (535)
Q Consensus 225 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~~ 261 (535)
||++||++++.||.+|..|++.|++.|.++...++..
T Consensus 86 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l~~i 122 (126)
T 3mqm_A 86 NAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQIDEI 122 (126)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888643
No 19
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=206.98 Aligned_cols=103 Identities=31% Similarity=0.386 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009401 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
..+.+.|..||..|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 12 ~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDAI--APGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYN 89 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCSSSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhCCccHhhcCCCChhh--ccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5688999999999999999999999999886 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 009401 231 PKDHEVHIIAEQFLARFEELFRPIN 255 (535)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (535)
++++.||.+|..|++.|++.|.+..
T Consensus 90 ~~~s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 90 RPDTVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654
No 20
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.94 E-value=1.9e-26 Score=209.49 Aligned_cols=104 Identities=37% Similarity=0.652 Sum_probs=98.1
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHhHh
Q 009401 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSK--NLYDSPASFAADVRLTFNNAM 227 (535)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~--~~Y~s~~eF~~DvrLif~Na~ 227 (535)
....++.|..||..|++|+.+|+|..||+. ++||||++|++||||+||++||++ +.|.++.+|++||+|||.||+
T Consensus 18 ~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~ 94 (135)
T 2yyn_A 18 TPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCA 94 (135)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHH
Confidence 466789999999999999999999999997 399999999999999999999998 599999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009401 228 TYNPKDHEVHIIAEQFLARFEELFRPINE 256 (535)
Q Consensus 228 ~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~ 256 (535)
+||++++.||.+|..|++.|+++|+++..
T Consensus 95 ~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 123 (135)
T 2yyn_A 95 EFNEPDSEVANAGIKLENYFEELLKNLYP 123 (135)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999887753
No 21
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=205.41 Aligned_cols=103 Identities=22% Similarity=0.329 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHcCCC------CCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 009401 152 KLMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNN 225 (535)
Q Consensus 152 ~~~k~c~~iL~~L~~~k~------s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~N 225 (535)
..+++|..||..|+++++ +++|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.|
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRN--QPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGG--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCccc--CCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 468899999999999854 999999999876 999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009401 226 AMTYNPKDHEVHIIAEQFLARFEELFRPINE 256 (535)
Q Consensus 226 a~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~ 256 (535)
|++||++++.||.+|..|++.|++.++++.+
T Consensus 83 a~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 83 AKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988764
No 22
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.94 E-value=1.1e-26 Score=208.07 Aligned_cols=103 Identities=26% Similarity=0.349 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHcC------CCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009401 151 GKLMKNCGQILTKLMKH------KLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFN 224 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~------k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~ 224 (535)
..+.+.|..||..|+++ +.+++|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.
T Consensus 14 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 91 (124)
T 3mb4_A 14 TPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSE--LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFN 91 (124)
T ss_dssp CHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccc--cCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 57899999999999984 45799999999876 99999999999999999999999999999999999999999
Q ss_pred hHhhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009401 225 NAMTYNPKDHEVHIIAEQFLARFEELFRPIN 255 (535)
Q Consensus 225 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (535)
||++||++++.||.+|..|++.|++.|+++.
T Consensus 92 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 92 NACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998763
No 23
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.94 E-value=2.1e-26 Score=205.09 Aligned_cols=105 Identities=28% Similarity=0.344 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHcCCC------CCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009401 151 GKLMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFN 224 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~------s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~ 224 (535)
..|.+.|..||..|++++. +++|..||+... +||||++|++||||+||++||.+|.|.++.+|..||+|||.
T Consensus 7 ~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 7 AYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQ--YPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999887 999999999876 99999999999999999999999999999999999999999
Q ss_pred hHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009401 225 NAMTYNPKDHEVHIIAEQFLARFEELFRPINEK 257 (535)
Q Consensus 225 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 257 (535)
||++||++++.||.+|..|++.|++.|+++..+
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999988654
No 24
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.93 E-value=4e-26 Score=206.08 Aligned_cols=106 Identities=19% Similarity=0.284 Sum_probs=100.4
Q ss_pred cHHHHHHHHHHHHHHHcCCC------CCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 009401 150 NGKLMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTF 223 (535)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k~------s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif 223 (535)
...+..+|..|+..|.++.. +|+|.+||+... +||||++|++||||+||++||+++.|.++.+|..||+|||
T Consensus 15 ~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~--~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif 92 (130)
T 3k2j_A 15 TENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKK--YPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMF 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhh--CccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 37799999999999998765 999999999876 9999999999999999999999999999999999999999
Q ss_pred HhHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009401 224 NNAMTYNPKDHEVHIIAEQFLARFEELFRPINEK 257 (535)
Q Consensus 224 ~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 257 (535)
.||++||++++.||.+|..|++.|++.|+++...
T Consensus 93 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 93 ENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988754
No 25
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.92 E-value=2e-25 Score=207.95 Aligned_cols=107 Identities=30% Similarity=0.456 Sum_probs=96.1
Q ss_pred HHHHHHHHHHH-HHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCC
Q 009401 153 LMKNCGQILTK-LMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNP 231 (535)
Q Consensus 153 ~~k~c~~iL~~-L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~ 231 (535)
+...+..|+.. |+.++.+|+|..||++.. +||||++|++||||+||++||+++.|.++.+|+.||+|||.||++||+
T Consensus 30 l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~ 107 (158)
T 3uv4_A 30 FSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 107 (158)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCcCChhh--cccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 44444555543 666888999999999886 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009401 232 KDHEVHIIAEQFLARFEELFRPINEKLMQE 261 (535)
Q Consensus 232 ~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~~ 261 (535)
+++.||.+|..|.+.|+..|.++..++...
T Consensus 108 ~~s~i~~~A~~L~~~~~~~l~e~~~~l~~l 137 (158)
T 3uv4_A 108 PESQYTKTAQEIVNVCYQTLTEYDEHLTQL 137 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988877643
No 26
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.92 E-value=3.2e-25 Score=209.31 Aligned_cols=103 Identities=31% Similarity=0.528 Sum_probs=98.2
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhh
Q 009401 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 229 (535)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~Y 229 (535)
....++.|..||..|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 70 ~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 147 (174)
T 2ri7_A 70 TEKDYEGLKRVLRSLQAHKMAWPFLEPVDPND--APDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYY 147 (174)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhhhhhhcCCCccc--CCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999986 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 009401 230 NPKDHEVHIIAEQFLARFEELFRPI 254 (535)
Q Consensus 230 N~~~s~v~~~A~~L~~~Fe~~~~~i 254 (535)
|++++.||.+|..|++.|++.|+.+
T Consensus 148 N~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 148 NPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998654
No 27
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.92 E-value=5.3e-25 Score=203.36 Aligned_cols=104 Identities=20% Similarity=0.302 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHcCCC-------CCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009401 152 KLMKNCGQILTKLMKHKL-------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFN 224 (535)
Q Consensus 152 ~~~k~c~~iL~~L~~~k~-------s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~ 224 (535)
....+|..||..|+++.. +++|..||+... +||||++|++||||+||++||++|.|.++.+|+.||+|||.
T Consensus 24 ~~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~ 101 (150)
T 3tlp_A 24 IRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKD--YPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFR 101 (150)
T ss_dssp HHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhh--CcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 346788888888887664 899999999876 99999999999999999999999999999999999999999
Q ss_pred hHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009401 225 NAMTYNPKDHEVHIIAEQFLARFEELFRPINEK 257 (535)
Q Consensus 225 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 257 (535)
||++||++++.||.+|..|++.|++.|+++...
T Consensus 102 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 134 (150)
T 3tlp_A 102 NARHYNEEGSQVYNDAHILEKLLKEKRKELGPL 134 (150)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999887543
No 28
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.91 E-value=2.2e-24 Score=194.65 Aligned_cols=100 Identities=27% Similarity=0.360 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009401 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
..+...|..+|..|+.++.+|+|..||++.. +||||++|++||||+||++||.+|.|.++.+|+.||+|||.||++||
T Consensus 9 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (130)
T 3dai_A 9 RELRIFLRNVTHRLAIDKRFRVFTKPVDPDE--VPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYN 86 (130)
T ss_dssp HHHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCccHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5688899999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHH----HHHHHHHHHHHHHHHH
Q 009401 231 PKDHEV----HIIAEQFLARFEELFR 252 (535)
Q Consensus 231 ~~~s~v----~~~A~~L~~~Fe~~~~ 252 (535)
++++++ +.+|..|++.|..+++
T Consensus 87 ~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 87 PDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 999876 6788888888887775
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.91 E-value=1.4e-24 Score=206.81 Aligned_cols=103 Identities=37% Similarity=0.658 Sum_probs=98.0
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHhHh
Q 009401 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSK--NLYDSPASFAADVRLTFNNAM 227 (535)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~--~~Y~s~~eF~~DvrLif~Na~ 227 (535)
...+++.|+.||..|+.++.+++|..||+.. +||||++|++||||+||++||++ +.|.++.+|++||+|||+||+
T Consensus 79 ~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~~---~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~ 155 (184)
T 3o36_A 79 TPIDKRKCERLLLFLYCHEMSLAFQDPVPLT---VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCA 155 (184)
T ss_dssp CHHHHHHHHHHHHHHHHSTTCHHHHSCCCTT---STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhchhhhhhccccccC---CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999853 89999999999999999999998 789999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009401 228 TYNPKDHEVHIIAEQFLARFEELFRPIN 255 (535)
Q Consensus 228 ~YN~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (535)
+||++++.||.+|..|++.|+++|+.++
T Consensus 156 ~yN~~~s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 156 EFNEPDSEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998763
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.90 E-value=8.5e-24 Score=212.55 Aligned_cols=108 Identities=30% Similarity=0.496 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009401 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
..|...|..||..|++++.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|+.||+|||+||++||
T Consensus 13 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 90 (265)
T 3uv5_A 13 VTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 90 (265)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchhhhCCCChhh--cCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcC
Confidence 5789999999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009401 231 PKDHEVHIIAEQFLARFEELFRPINEKLMQ 260 (535)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~ 260 (535)
++++.||.+|..|++.|++.|+.+..++..
T Consensus 91 ~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~ 120 (265)
T 3uv5_A 91 GPKHSLTQISQSMLDLCDEKLKEKEDKLAR 120 (265)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999988776653
No 31
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.90 E-value=6.4e-24 Score=213.43 Aligned_cols=107 Identities=30% Similarity=0.463 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHH-HHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009401 152 KLMKNCGQILTK-LMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 152 ~~~k~c~~iL~~-L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
.+...|..++.. |+.++.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 136 ~~~~il~~i~~~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN 213 (265)
T 3uv5_A 136 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN 213 (265)
T ss_dssp HHHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHhCCCChhH--hCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 355566666654 788999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009401 231 PKDHEVHIIAEQFLARFEELFRPINEKLMQ 260 (535)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~ 260 (535)
++++.||.+|..|+..|+..|+.+...+..
T Consensus 214 ~~~s~~~~~A~~l~~~~~~~~~~~~~~~~~ 243 (265)
T 3uv5_A 214 GPESQYTKTAQEIVNVCYQTLTEYDEHLTQ 243 (265)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877754
No 32
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.90 E-value=5.2e-24 Score=203.94 Aligned_cols=100 Identities=18% Similarity=0.261 Sum_probs=93.7
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccC--CCCCHHHHHHHHhcC---CCCCHHHHHHHHHHHHH
Q 009401 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIK--NPMDLGTVKSKLSKN---LYDSPASFAADVRLTFN 224 (535)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk--~PMDL~tIk~KL~~~---~Y~s~~eF~~DvrLif~ 224 (535)
....+++|..||..|+.|+.+|+|.+||+ |+||++|+ +||||+||++||+++ .|.++++|++||+|||+
T Consensus 74 ~~~~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~ 147 (189)
T 2ro1_A 74 SPANQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFK 147 (189)
T ss_dssp CHHHHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHH
Confidence 35667899999999999999999999998 57999998 899999999999999 99999999999999999
Q ss_pred hHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009401 225 NAMTYNPKDHEVHIIAEQFLARFEELFRPINE 256 (535)
Q Consensus 225 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~ 256 (535)
||++|| +++.||.+|..|++.|+++|++++.
T Consensus 148 N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~ 178 (189)
T 2ro1_A 148 QFNKLT-EDKADVQSIIGLQRFFETRMNEAFG 178 (189)
T ss_dssp HHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999 5899999999999999999988754
No 33
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=2e-23 Score=188.70 Aligned_cols=95 Identities=29% Similarity=0.459 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009401 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
.++...|..||..|+.++.+|+|..| +||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 11 ~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN 83 (131)
T 2dkw_A 11 RELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYN 83 (131)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 67889999999999999999999998 79999999999999999999999999999999999999999999999
Q ss_pred CCCCH----HHHHHHHHHHHHHHHHH
Q 009401 231 PKDHE----VHIIAEQFLARFEELFR 252 (535)
Q Consensus 231 ~~~s~----v~~~A~~L~~~Fe~~~~ 252 (535)
+++|+ |+.+|..|++.|...++
T Consensus 84 ~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 84 PDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 99985 57899999998888764
No 34
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.89 E-value=2e-23 Score=202.61 Aligned_cols=105 Identities=38% Similarity=0.594 Sum_probs=99.1
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHh
Q 009401 149 DNGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSK---NLYDSPASFAADVRLTFNN 225 (535)
Q Consensus 149 ~~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~---~~Y~s~~eF~~DvrLif~N 225 (535)
....+++.|+.||..|++++.+++|..||+. ++||||++|++||||+||++||++ +.|.++.+|+.||+|||+|
T Consensus 78 ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~N 154 (207)
T 3u5n_A 78 LSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKN 154 (207)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHH
Confidence 4477899999999999999999999999986 399999999999999999999997 7999999999999999999
Q ss_pred HhhhCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHH
Q 009401 226 AMTYNP-----------------KDHEVHIIAEQFLARFEELFRPINE 256 (535)
Q Consensus 226 a~~YN~-----------------~~s~v~~~A~~L~~~Fe~~~~~i~~ 256 (535)
|++||+ +++.|+.+|..|+..|+.+|++++.
T Consensus 155 a~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p 202 (207)
T 3u5n_A 155 CERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYS 202 (207)
T ss_dssp HHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999 9999999999999999999988753
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.88 E-value=4.9e-23 Score=209.73 Aligned_cols=107 Identities=30% Similarity=0.496 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009401 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
..+...|..||..|+.++.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 46 ~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~--~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 123 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 123 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTTCGGGSSSCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCcchhhcCCCCchh--cccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHc
Confidence 4578899999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009401 231 PKDHEVHIIAEQFLARFEELFRPINEKLM 259 (535)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~ 259 (535)
++++.||.+|..|.+.|++.|+.+..++.
T Consensus 124 ~~~s~i~~~A~~L~~~~~~~~~~~~~~~~ 152 (292)
T 3aad_A 124 GPKHSLTQISQSMLDLCDEKLKEKEDKLA 152 (292)
T ss_dssp CSSSHHHHHHTHHHHTTTTTGGGSHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhhcchhhhh
Confidence 99999999999999999999987765543
No 36
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.87 E-value=5.9e-22 Score=203.25 Aligned_cols=86 Identities=30% Similarity=0.391 Sum_probs=83.1
Q ss_pred CCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHH
Q 009401 167 HKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLAR 246 (535)
Q Consensus 167 ~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s~v~~~A~~L~~~ 246 (535)
|+.+|+|.+||+... +||||+||++||||+||++||++|.|.++.+|..||+|||+||++||+++|.||.+|..|++.
T Consensus 178 ~~~s~~F~~pvd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 255 (311)
T 2r0y_A 178 VKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 255 (311)
T ss_dssp SCTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CccHHHHhCCCChhh--cccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 567999999999986 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 009401 247 FEELFRPI 254 (535)
Q Consensus 247 Fe~~~~~i 254 (535)
|+.+|+..
T Consensus 256 f~~~~~~~ 263 (311)
T 2r0y_A 256 FNYLIQKE 263 (311)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999874
No 37
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.87 E-value=4.9e-22 Score=202.33 Aligned_cols=103 Identities=31% Similarity=0.489 Sum_probs=94.3
Q ss_pred HHHHHH-HHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 009401 156 NCGQIL-TKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 234 (535)
Q Consensus 156 ~c~~iL-~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s 234 (535)
.+..++ ..|+.++.+|+|..||+... +||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||++++
T Consensus 173 ~l~~i~~~~l~~~~~s~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s 250 (292)
T 3aad_A 173 ILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 250 (292)
T ss_dssp HHHHHHHHTGGGSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHhhhhhhcCcchhHHHhcccccc--cccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 344444 34788899999999999876 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009401 235 EVHIIAEQFLARFEELFRPINEKLMQ 260 (535)
Q Consensus 235 ~v~~~A~~L~~~Fe~~~~~i~~~~~~ 260 (535)
.||.+|..|++.|+..|..+..++..
T Consensus 251 ~i~~~A~~L~~~~~~~~~~~~~~l~~ 276 (292)
T 3aad_A 251 QYTKTAQEIVNVCYQTLTEYDEHLTQ 276 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877754
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.84 E-value=2.1e-21 Score=203.13 Aligned_cols=86 Identities=30% Similarity=0.391 Sum_probs=83.1
Q ss_pred CCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHH
Q 009401 167 HKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLAR 246 (535)
Q Consensus 167 ~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s~v~~~A~~L~~~ 246 (535)
|+.+|+|..||+... +||||+||++||||+||++||++|.|.++.+|..||+|||.||++||++++.||.+|..|++.
T Consensus 228 ~~~s~~F~~pvd~~~--~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 228 VKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SCTTGGGSSCCCTTT--CTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhh--cccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 567999999999986 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 009401 247 FEELFRPI 254 (535)
Q Consensus 247 Fe~~~~~i 254 (535)
|+.+|+.+
T Consensus 306 f~~~~~~~ 313 (361)
T 2r10_A 306 FNYLIQKE 313 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999874
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.79 E-value=7e-20 Score=191.59 Aligned_cols=100 Identities=23% Similarity=0.210 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHcCC--CCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHhHh
Q 009401 151 GKLMKNCGQILTKLMKHK--LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYD-SPASFAADVRLTFNNAM 227 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k--~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~-s~~eF~~DvrLif~Na~ 227 (535)
..+...|..+|..|.+.. .+++|..||+... +||||+||++||||+||++|| +.|. ++.+|+.||+|||.||+
T Consensus 77 ~~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~--~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~ 152 (361)
T 2r10_A 77 PKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQ 152 (361)
T ss_dssp TTHHHHHHHHHHHHHHHTHHHHGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCcccHHhcCCCCccc--CCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHh
Confidence 346678999999987644 4899999999877 999999999999999999999 5555 89999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 009401 228 TYNPKDHEVHIIAEQFLARFEELFRPI 254 (535)
Q Consensus 228 ~YN~~~s~v~~~A~~L~~~Fe~~~~~i 254 (535)
+||++++.||.+|..|+++|+..|...
T Consensus 153 ~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 153 AYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999988754
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.78 E-value=1.2e-19 Score=186.15 Aligned_cols=100 Identities=23% Similarity=0.210 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHcCC--CCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHhHh
Q 009401 151 GKLMKNCGQILTKLMKHK--LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYD-SPASFAADVRLTFNNAM 227 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k--~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~-s~~eF~~DvrLif~Na~ 227 (535)
..|..+|..+|..+.+.- .+++|.+||+... +||||+||++||||+||++|| +.|. ++.+|+.||+|||.||+
T Consensus 27 p~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~--~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~ 102 (311)
T 2r0y_A 27 PKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQ 102 (311)
T ss_dssp TTHHHHHHHHHHHHHHHSHHHHGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCchhHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHH
Confidence 456777877887777633 4899999999887 999999999999999999999 5555 89999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 009401 228 TYNPKDHEVHIIAEQFLARFEELFRPI 254 (535)
Q Consensus 228 ~YN~~~s~v~~~A~~L~~~Fe~~~~~i 254 (535)
+||++++.||.+|..|++.|++.|.+.
T Consensus 103 ~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 103 AYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999998765
No 41
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=1.7e-19 Score=152.59 Aligned_cols=72 Identities=40% Similarity=0.709 Sum_probs=67.4
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhhcCCCCC-CCCeEEEeCCCCCHHHHHHHHHHHHHHHH
Q 009401 350 DPNKREMSMEEKHKLGIGLQSLPQEKMEQVIHILKKRNGNLRQ-DEDEIELDIEALDTETLWELDRFVTNYKK 421 (535)
Q Consensus 350 ~~~~r~MT~eEK~~Ls~~I~~Lp~ekl~~VIqIIkk~~p~l~~-~~DEIELDID~Ld~eTL~eL~~~V~~~~k 421 (535)
++.+++||++||++|+.+|+.||+++|.+||+||++++|.+.+ +++|||||||.|++.|||+|++||.+|++
T Consensus 12 e~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~~L~~yV~~~l~ 84 (90)
T 2jns_A 12 EDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLR 84 (90)
T ss_dssp TSSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999999999999874 67999999999999999999999999965
No 42
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=151.94 Aligned_cols=101 Identities=14% Similarity=0.171 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHcCCC------CCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009401 151 GKLMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFN 224 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~------s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~ 224 (535)
..+...+..|+..++++++ +.+|...++.. |+||. ++||+|.+|++||..|.|.++++|..||.|||.
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~ 79 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLE 79 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3577889999999999875 78999988775 68998 999999999999999999999999999999999
Q ss_pred hHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009401 225 NAMTYNPKDHEVHIIAEQFLARFEELFRPINEK 257 (535)
Q Consensus 225 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 257 (535)
||++||.+||.||.+|..|+++|.+.+.++...
T Consensus 80 NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 80 RARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999887664
No 43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.55 E-value=5e-15 Score=140.60 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009401 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
.++...+..||..|..++.+|+|+. |. ++.||||.||++||+.|.|.++.+|..||+|||+||..||
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~-----------y~--~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~ 140 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLR-----------YR--QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSD 140 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHT-----------CC--C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhccccHhhhh-----------hh--hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 5677788999999999999999976 32 5999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009401 231 PKDHEVHIIAEQFLARFEELFRPINEKLM 259 (535)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~ 259 (535)
..++.+..++..|+.+|+++++.++.++.
T Consensus 141 ~~~~e~~~ag~~l~~~f~~~l~~vfpwf~ 169 (183)
T 3lqh_A 141 GGQPEIKKANSMVKSFFIRQMERVFPWFS 169 (183)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred CCChhhhhhhhHHHHHHHHHHHHHCCCCC
Confidence 99999999999999999999999988875
No 44
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=95.79 E-value=0.041 Score=48.04 Aligned_cols=62 Identities=18% Similarity=0.426 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHhcCCC-hhhHHHHHHHHHhhcCCCCCCCCeEEEeCCCCCHHHHHHHHHHH
Q 009401 354 REMSMEEKHKLGIGLQSLP-QEKMEQVIHILKKRNGNLRQDEDEIELDIEALDTETLWELDRFV 416 (535)
Q Consensus 354 r~MT~eEK~~Ls~~I~~Lp-~ekl~~VIqIIkk~~p~l~~~~DEIELDID~Ld~eTL~eL~~~V 416 (535)
..=-.+|-+.|-..|-.|. .+.|.+||++|.+ .+++...+....+|+.+||..|+++|..|+
T Consensus 57 ~~~y~~~L~~l~~rim~l~d~~~lq~iv~li~~-tG~~~it~~tfDFDLc~LD~~Tv~klq~~l 119 (125)
T 2lm0_A 57 DKAYLDELVELHRRLMTLRERHILQQIVNLIEE-TGHFHITNTTFDFDLCSLDKTTVRKLQSYL 119 (125)
T ss_dssp SCSTHHHHHHHHHHHHTCCCCSSHHHHHHHHHT-SCCEEECSSCEEECTTTSCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHh-cCceeeecccccceeeccCHHHHHHHHHHH
Confidence 3345689999999999996 5559999999987 456666778999999999999999999997
No 45
>1td6_A F10_ORF294, hypothetical protein Mg237 homolog; alpha helical, structural genomics, PSI, protein structure initiative; 2.50A {Mycoplasma pneumoniae} SCOP: a.234.1.1
Probab=51.16 E-value=3.2 Score=40.33 Aligned_cols=11 Identities=9% Similarity=0.208 Sum_probs=7.2
Q ss_pred HHHHHHHHHHH
Q 009401 409 LWELDRFVTNY 419 (535)
Q Consensus 409 L~eL~~~V~~~ 419 (535)
-..+..||.++
T Consensus 264 A~~I~QYv~n~ 274 (306)
T 1td6_A 264 AAKIYEYVSQI 274 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45677777665
No 46
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=27.16 E-value=66 Score=22.28 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 009401 92 KKELFELKNRLISELEQIRQLKNR 115 (535)
Q Consensus 92 ~~e~~~l~~Rl~~eLeqvr~l~~k 115 (535)
+.++..|-.||...+++||.|...
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~ 28 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQ 28 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999988543
No 47
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=23.71 E-value=18 Score=38.56 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=13.7
Q ss_pred CCccCCCCCcccccCCCCCCCCC
Q 009401 15 PMQTKGSGPKFMGKAPNPNPKKR 37 (535)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (535)
||||+||...|.+-.|-||||.+
T Consensus 4 ~~~~~~~~~~~~i~t~~P~~ng~ 26 (524)
T 2x1l_A 4 HHHHHGGSEPFYITTAIAYPNGV 26 (524)
T ss_dssp -------CCEEEEEECCBCCSSC
T ss_pred cccccCCCCCEEEeeCCCCCCCC
Confidence 35778888999999999999855
Done!