BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009405
(535 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1LZD9|PSPC1_BOVIN Paraspeckle component 1 OS=Bos taurus GN=PSPC1 PE=2 SV=1
Length = 520
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 362 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVI 420
RIR A HG + ++NL P V +L+ AF + K + V G+ FV
Sbjct: 145 RIRFAT-HGAALTVKNLSP----VVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVE 199
Query: 421 FKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQRE 479
F + A + + +G LL+ + P +F L +KL + Q+
Sbjct: 200 FAAKPPARKALERCGDGAFLLT-------TTPRPVIVEPMEQFDDEDGLPEKLMQKTQQY 252
Query: 480 MREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 535
+E +QP + E++ A W LD K+ EQ + +++ K KL+++
Sbjct: 253 HKEREQPPRFAQPGTFEFEYASRWKA----LDEMEKQQREQVDRNIREAKEKLEAE 304
>sp|Q8R326|PSPC1_MOUSE Paraspeckle component 1 OS=Mus musculus GN=Pspc1 PE=1 SV=1
Length = 523
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 362 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVI 420
RIR A HG + ++NL P V +L+ AF + K + V G+ FV
Sbjct: 147 RIRFAT-HGAALTVKNLSP----VVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVE 201
Query: 421 FKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQRE 479
F + A + + +G LL+ + P +F L +KL + Q+
Sbjct: 202 FAAKPPARKALERCGDGAFLLT-------TTPRPVIVEPMEQFDDEDGLPEKLMQKTQQY 254
Query: 480 MREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 535
+E +QP + E++ A W LD K+ EQ + +++ K KL+++
Sbjct: 255 HKEREQPPRFAQPGTFEFEYASRWKA----LDEMEKQQREQVDRNIREAKEKLEAE 306
>sp|Q4KLH4|PSPC1_RAT Paraspeckle component 1 OS=Rattus norvegicus GN=Pspc1 PE=2 SV=1
Length = 522
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 362 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVI 420
RIR A HG + ++NL P V +L+ AF + K + V G+ FV
Sbjct: 147 RIRFAT-HGAALTVKNLSP----VVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVE 201
Query: 421 FKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQRE 479
F + A + + +G LL+ + P +F L +KL + Q+
Sbjct: 202 FAAKPPARKALERCGDGAFLLT-------TTPRPVIVEPMEQFDDEDGLPEKLMQKTQQY 254
Query: 480 MREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 535
+E +QP + E++ A W LD K+ EQ + +++ K KL+++
Sbjct: 255 HKEREQPPRFAQPGTFEFEYASRWKA----LDEMEKQQREQVDRNIREAKEKLEAE 306
>sp|Q8WXF1|PSPC1_HUMAN Paraspeckle component 1 OS=Homo sapiens GN=PSPC1 PE=1 SV=1
Length = 523
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 362 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVI 420
RIR A HG + ++NL P V +L+ AF + K + V G+ FV
Sbjct: 148 RIRFAT-HGAALTVKNLSP----VVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVE 202
Query: 421 FKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQRE 479
F + A + + +G LL+ + P +F L +KL + Q+
Sbjct: 203 FAAKPPARKALERCGDGAFLLT-------TTPRPVIVEPMEQFDDEDGLPEKLMQKTQQY 255
Query: 480 MREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 535
+E +QP + E++ A W LD K+ EQ + +++ K KL+++
Sbjct: 256 HKEREQPPRFAQPGTFEFEYASRWKA----LDEMEKQQREQVDRNIREAKEKLEAE 307
>sp|Q5ZK88|PSPC1_CHICK Paraspeckle component 1 OS=Gallus gallus GN=PSPC1 PE=2 SV=1
Length = 523
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 362 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVI 420
RIR A HG + ++NL P V +L+ AF + + + V G+ FV
Sbjct: 147 RIRFAT-HGAALTVKNLSP----VVSNELLEQAFSQFGPVERAVVVVDDRGRATGKGFVE 201
Query: 421 FKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQRE 479
F + A + + +G LL+ + P +F L +KL + Q+
Sbjct: 202 FAAKPPARKALERCSDGAFLLT-------TTPRPVVVEPMEQFDDEDGLPEKLMQKTQQY 254
Query: 480 MREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 535
+E +QP + E++ A W LD K+ EQ + +++ K KL+++
Sbjct: 255 HKEREQPPRFAQPGTFEFEYASRWKA----LDEMEKQQREQVDRNIREAKEKLEAE 306
>sp|P68720|VTF3S_VACCW Intermediate transcription factor 3 small subunit OS=Vaccinia virus
(strain Western Reserve) GN=VITF3S PE=1 SV=1
Length = 288
Score = 35.8 bits (81), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 137 NEHTKVLTTKQKSSFAERPVSSVDSKAWLVGMKSSLGEKVSSIGGAQQGEIVRTIKPGIT 196
+EH+ + ++ S+ +S + + +L+ +KS L + +S GA ++V T+ IT
Sbjct: 167 DEHSSGIFNIRQESYLVSSLSEITYRFYLINLKSDLVQWSAS-TGAVINQMVNTV--LIT 223
Query: 197 FGDKIASSSKVGFEKSKAKSSKALETKEEVKSFKDPNELYNGPSNKAKFDSSRKV 251
+K+ V S+ S A+E+K +K KD NEL+ N+ K SS K+
Sbjct: 224 VYEKL---QLVIENDSQFTCSLAVESKLPIKLLKDRNELFTKFINELKKTSSFKI 275
>sp|P68719|VTF3S_VACCA Intermediate transcription factor 3 small subunit OS=Vaccinia virus
(strain Ankara) GN=VITF3S PE=2 SV=1
Length = 288
Score = 35.8 bits (81), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 137 NEHTKVLTTKQKSSFAERPVSSVDSKAWLVGMKSSLGEKVSSIGGAQQGEIVRTIKPGIT 196
+EH+ + ++ S+ +S + + +L+ +KS L + +S GA ++V T+ IT
Sbjct: 167 DEHSSGIFNIRQESYLVSSLSEITYRFYLINLKSDLVQWSAS-TGAVINQMVNTV--LIT 223
Query: 197 FGDKIASSSKVGFEKSKAKSSKALETKEEVKSFKDPNELYNGPSNKAKFDSSRKV 251
+K+ V S+ S A+E+K +K KD NEL+ N+ K SS K+
Sbjct: 224 VYEKL---QLVIENDSQFTCSLAVESKLPIKLLKDRNELFTKFINELKKTSSFKI 275
>sp|Q1JPY8|PSPC1_DANRE Paraspeckle component 1 OS=Danio rerio GN=pspc1 PE=2 SV=1
Length = 512
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 20/177 (11%)
Query: 362 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVI 420
RIR A HG + + NL P V +L+ AF + + I V G+ V
Sbjct: 142 RIRFA-THGAALTVRNLSP----VVSNELLEQAFSQFGPVERAIVIVDDRGRPTGKGIVE 196
Query: 421 FKTREVAELVVTKLEEGCLLLSNG-RPLLGSIGTPCFTGKQSKFVGHLALDK-LKFQMQR 478
F + A + +G LLL+ RP+ I P + L K ++ +R
Sbjct: 197 FANKPAARKALDHCADGALLLTTSPRPV---ILEPTEQYDDEDGLPEKLLQKSAQYHKER 253
Query: 479 EMREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 535
E + H +QP + E++ + W L E +D K+ EQ E +++ K KL+++
Sbjct: 254 EHK-----PHFAQPGTFEFEYSSRWKALDE-MD---KQQREQVERNIQEAKEKLETE 301
>sp|P20986|VTF3S_VACCC Intermediate transcription factor 3 small subunit OS=Vaccinia virus
(strain Copenhagen) GN=VITF3S PE=2 SV=1
Length = 288
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 137 NEHTKVLTTKQKSSFAERPVSSVDSKAWLVGMKSSLGEKVSSIGGAQQGEIVRTIKPGIT 196
+EH+ + ++ S+ +S + + +L+ +KS L + +S GA ++V T+ IT
Sbjct: 167 DEHSSGIFNIRQESYLVSSLSEITYRFYLINLKSDLVQWSAS-TGAVINQMVNTVL--IT 223
Query: 197 FGDKIASSSKVGFEKSKAKSSKALETKEEVKSFKDPNELYNGPSNKAKFDSSRKV 251
+K+ V S+ S A+E++ +K KD NEL+ N+ K SS K+
Sbjct: 224 VYEKL---QLVIENDSQFTCSLAVESELPIKLLKDRNELFTKFINELKKTSSFKI 275
>sp|Q99K48|NONO_MOUSE Non-POU domain-containing octamer-binding protein OS=Mus musculus
GN=Nono PE=1 SV=3
Length = 473
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 362 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIF 421
R+R A +L V NL P Y S + + + F + A +I V G+ V F
Sbjct: 142 RVRFACHSASLTV-RNL-PQYVSNELLEEAFSVFGQVERAVVI--VDDRGRPSGKGIVEF 197
Query: 422 KTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQREM 480
+ A + + EG LL+ + P + L +KL + Q+
Sbjct: 198 SGKPAARKALDRCSEGSFLLT-------TFPRPVTVEPMDQLDDEEGLPEKLVIKNQQFH 250
Query: 481 REAVSTSHCSQPNSLEYDMAIEWSLL-------QERLDCAWKKLYEQQELELK 526
+E +QP S EY+ A+ W L Q+++D K+ E+ E+E++
Sbjct: 251 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEME 303
>sp|Q5FVM4|NONO_RAT Non-POU domain-containing octamer-binding protein OS=Rattus
norvegicus GN=Nono PE=2 SV=3
Length = 476
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 362 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIF 421
R+R A +L V NL P Y S + + + F + A +I V G+ V F
Sbjct: 145 RVRFACHSASLTV-RNL-PQYVSNELLEEAFSVFGQVERAVVI--VDDRGRPSGKGIVEF 200
Query: 422 KTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQREM 480
+ A + + EG LL+ + P + L +KL + Q+
Sbjct: 201 SGKPAARKALDRCSEGSFLLT-------TFPRPVTVEPMDQLDDEEGLPEKLVIKNQQFH 253
Query: 481 REAVSTSHCSQPNSLEYDMAIEWSLL-------QERLDCAWKKLYEQQELELK 526
+E +QP S EY+ A+ W L Q+++D K+ E+ E+E++
Sbjct: 254 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEME 306
>sp|P33834|VTF3S_VAR67 Intermediate transcription factor 3 small subunit OS=Variola virus
(isolate Human/India/Ind3/1967) GN=VITF3S PE=2 SV=1
Length = 288
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 137 NEHTKVLTTKQKSSFAERPVSSVDSKAWLVGMKSSLGEKVSSIGGAQQGEIVRTIKPGIT 196
+EH+ + ++ S+ +S + + +L+ +KS L + +S GA ++V T+ IT
Sbjct: 167 DEHSSGIFNIRQESYLVSSLSEITYRFYLINLKSDLVQWSAS-TGAVINQMVNTV--LIT 223
Query: 197 FGDKIASSSKVGFEKSKAKSSKALETKEEVKSFKDPNELYNGPSNKAKFDSSRKV 251
+K+ V S+ S A+E++ +K KD NEL+ N+ K SS K+
Sbjct: 224 VYEKL---QLVIENDSQFICSLAVESELPIKLLKDRNELFTKFINELKKTSSFKI 275
>sp|Q5RFL9|NONO_PONAB Non-POU domain-containing octamer-binding protein OS=Pongo abelii
GN=NONO PE=2 SV=3
Length = 471
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 362 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIF 421
R+R A +L V NL P Y S + + + F + A +I V G+ V F
Sbjct: 140 RVRFACHSASLTV-RNL-PQYVSNELLEEAFSVFGQVERAVVI--VDDRGRPSGKGIVEF 195
Query: 422 KTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQREM 480
+ A + + EG LL+ + P + L +KL + Q+
Sbjct: 196 SGKPAARKALDRCSEGSFLLT-------TFPRPVTVEPMDQLDDEEGLPEKLVIKNQQFH 248
Query: 481 REAVSTSHCSQPNSLEYDMAIEWSLL-------QERLDCAWKKLYEQQELELK 526
+E +QP S EY+ A+ W L Q+++D K+ E+ E+E++
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEME 301
>sp|Q15233|NONO_HUMAN Non-POU domain-containing octamer-binding protein OS=Homo sapiens
GN=NONO PE=1 SV=4
Length = 471
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 362 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIF 421
R+R A +L V NL P Y S + + + F + A +I V G+ V F
Sbjct: 140 RVRFACHSASLTV-RNL-PQYVSNELLEEAFSVFGQVERAVVI--VDDRGRPSGKGIVEF 195
Query: 422 KTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQREM 480
+ A + + EG LL+ + P + L +KL + Q+
Sbjct: 196 SGKPAARKALDRCSEGSFLLT-------TFPRPVTVEPMDQLDDEEGLPEKLVIKNQQFH 248
Query: 481 REAVSTSHCSQPNSLEYDMAIEWSLL-------QERLDCAWKKLYEQQELELK 526
+E +QP S EY+ A+ W L Q+++D K+ E+ E+E++
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEME 301
>sp|Q197C1|ICP46_IIV3 Immediate-early protein ICP-46 homolog OS=Invertebrate iridescent
virus 3 GN=IIV3-039R PE=3 SV=1
Length = 443
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 362 RIRVAHEHGTLVVLENLDPSYTSTV---------VEDLVWHAFKENCSAKMIPRVAFASP 412
++RVA + ++ +L+ L P YT+T + D+++H + + ++P +P
Sbjct: 279 QLRVAQDDASIALLKQLFPQYTATFQSHEQSVDWLVDVIYHEYTKRKQRSLLPSDLTTTP 338
Query: 413 YFGQSFVIF-KTREVAELVVTKLEEGCLL 440
Q +F K + + + V+TK LL
Sbjct: 339 QIDQRMYLFIKNKLINKGVITKERIKALL 367
>sp|Q8MEX4|MATK_ZAMIT Maturase K OS=Zamia integrifolia GN=matK PE=3 SV=1
Length = 514
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 352 KWFKELPWEERIR-VAHEHGTLVVLENLD-----PSYTSTVVEDLVWHAFKENCSAKMIP 405
+W ++ P+ +R V HEH L++ NLD S +T + +W+++ C + ++P
Sbjct: 166 RWIQDAPFLHSLRFVLHEHRNLIISSNLDQLILIASKENTRLSLFLWNSYAYECESLLVP 225
>sp|A0JM49|LTN1_XENTR E3 ubiquitin-protein ligase listerin OS=Xenopus tropicalis GN=ltn1
PE=2 SV=1
Length = 1696
Score = 33.1 bits (74), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 41 VALKLDSNKKEVSKNATISD---ETVISAQQNIPESVSTKQEGGFIDTSVKQG------V 91
+ +K S +EV ++ D E +I QN P T + G + +V+Q +
Sbjct: 1554 MTVKARSTTREVIATYSVDDICIELIIQLPQNYPLGSITVESGRRVGVAVQQWRNWMLQL 1613
Query: 92 EASLIRQNSSLLDNVDLESGGKAKSGEGLEDISI 125
L QN S+++ + L K EG+ED I
Sbjct: 1614 NTYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMI 1647
>sp|Q8MEX7|MATK_MACCO Maturase K OS=Macrozamia communis GN=matK PE=3 SV=1
Length = 499
Score = 33.1 bits (74), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 352 KWFKELPWEERIR-VAHEHGTLVVLENLD-----PSYTSTVVEDLVWHAFKENCSAKMIP 405
+W ++ P+ +R V HEH L++ NLD S +T + +W+ + C + ++P
Sbjct: 166 RWIQDAPFLHSLRSVLHEHRNLIISSNLDQLILIASKKNTRLSLFLWNYYAYECESLLVP 225
>sp|Q6A009|LTN1_MOUSE E3 ubiquitin-protein ligase listerin OS=Mus musculus GN=Ltn1 PE=1
SV=3
Length = 1767
Score = 33.1 bits (74), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 41 VALKLDSNKKEVSKNATISD---ETVISAQQNIPESVSTKQEGGFIDTSVKQG------V 91
+ +K + +EV TI D E +I N P T + G I +V+Q +
Sbjct: 1625 MTVKARATTREVMATYTIEDIVIELIIQLPSNYPLGSITVESGKRIGVAVQQWRNWMLQL 1684
Query: 92 EASLIRQNSSLLDNVDLESGGKAKSGEGLEDISI 125
L QN S+++ + L K EG+ED I
Sbjct: 1685 STYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMI 1718
>sp|Q65UE1|POTA_MANSM Spermidine/putrescine import ATP-binding protein PotA OS=Mannheimia
succiniciproducens (strain MBEL55E) GN=potA PE=3 SV=1
Length = 373
Score = 32.7 bits (73), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 54/140 (38%), Gaps = 33/140 (23%)
Query: 165 LVGMKSSLGEKVSSIGGAQQGEIV--RTI--KPGITFGDKIASSSKVGFEKSKAKSSKAL 220
+V ++ K + + G QQ I R + KP + D+ S+ K KAL
Sbjct: 127 MVQLEEMADRKPTQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKAL 186
Query: 221 ETK------------EEVKSFKD---------------PNELYNGPSN--KAKFDSSRKV 251
+ K EE + D P E+Y PSN AKF +
Sbjct: 187 QRKLGITFIFVTHDQEEALTMSDRIIVLRKGNIEQDGSPREIYEEPSNLFVAKFIGEINI 246
Query: 252 FDDKIKNRVQKLGLDSNVHG 271
FD ++ NRV + + +NV G
Sbjct: 247 FDAQVLNRVDEKRVRANVEG 266
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,960,045
Number of Sequences: 539616
Number of extensions: 7618130
Number of successful extensions: 20012
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 161
Number of HSP's that attempted gapping in prelim test: 19940
Number of HSP's gapped (non-prelim): 213
length of query: 535
length of database: 191,569,459
effective HSP length: 122
effective length of query: 413
effective length of database: 125,736,307
effective search space: 51929094791
effective search space used: 51929094791
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)