Query 009405
Match_columns 535
No_of_seqs 20 out of 22
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 04:27:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sde_A Paraspeckle component 1 99.5 6.3E-14 2.2E-18 128.8 10.5 153 370-532 96-249 (261)
2 4fxv_A ELAV-like protein 1; RN 98.9 3.1E-09 1.1E-13 86.3 7.4 93 357-454 6-98 (99)
3 1x4g_A Nucleolysin TIAR; struc 98.7 1.7E-07 5.9E-12 75.6 11.0 94 355-459 10-103 (109)
4 1x5t_A Splicing factor 3B subu 98.7 1.3E-07 4.5E-12 73.9 9.6 88 368-459 3-90 (96)
5 4a8x_A RNA-binding protein wit 98.6 4.8E-08 1.7E-12 74.8 6.0 85 369-457 3-87 (88)
6 2dhg_A TRNA selenocysteine ass 98.6 1.2E-07 4.2E-12 75.2 8.1 87 368-459 7-94 (104)
7 2dis_A Unnamed protein product 98.6 2.7E-07 9.2E-12 73.8 9.9 88 369-457 7-94 (109)
8 2d9p_A Polyadenylate-binding p 98.6 8.6E-08 2.9E-12 76.2 5.9 86 368-460 13-98 (103)
9 2lxi_A RNA-binding protein 10; 98.5 3.7E-07 1.3E-11 72.7 9.5 81 371-454 2-82 (91)
10 2cph_A RNA binding motif prote 98.5 3.2E-07 1.1E-11 73.0 9.0 89 367-459 12-101 (107)
11 3ucg_A Polyadenylate-binding p 98.5 2.4E-07 8.2E-12 71.2 7.9 85 368-458 4-88 (89)
12 2cqb_A Peptidyl-prolyl CIS-tra 98.5 2.5E-07 8.4E-12 73.3 7.9 88 368-460 10-97 (102)
13 1nu4_A U1A RNA binding domain; 98.5 1.4E-07 4.8E-12 73.8 6.3 84 367-454 5-88 (97)
14 2dgo_A Cytotoxic granule-assoc 98.5 3.2E-07 1.1E-11 74.3 8.5 91 368-463 13-103 (115)
15 2dnz_A Probable RNA-binding pr 98.5 4E-07 1.4E-11 71.0 8.7 87 369-460 4-90 (95)
16 2dgx_A KIAA0430 protein; RRM d 98.5 4.3E-07 1.5E-11 72.2 8.9 83 367-456 6-91 (96)
17 1whw_A Hypothetical protein ri 98.5 5.6E-07 1.9E-11 70.8 9.3 87 368-459 6-92 (99)
18 2cqi_A Nucleolysin TIAR; RNA r 98.5 7.9E-07 2.7E-11 70.7 10.1 86 368-460 13-98 (103)
19 3ulh_A THO complex subunit 4; 98.5 1.7E-07 6E-12 74.7 6.3 82 364-451 23-104 (107)
20 1x5s_A Cold-inducible RNA-bind 98.5 5.9E-07 2E-11 71.1 9.0 87 368-459 10-96 (102)
21 2jvr_A Nucleolar protein 3; RN 98.5 4.5E-07 1.6E-11 76.5 8.8 82 368-457 26-107 (111)
22 2kt5_A RNA and export factor-b 98.5 6E-07 2.1E-11 73.9 9.3 87 366-458 31-117 (124)
23 2do4_A Squamous cell carcinoma 98.5 2.5E-07 8.6E-12 73.2 6.7 83 369-457 16-98 (100)
24 2ywk_A Putative RNA-binding pr 98.5 2.8E-07 9.5E-12 71.9 6.9 82 365-452 11-92 (95)
25 3p5t_L Cleavage and polyadenyl 98.5 1.3E-07 4.3E-12 74.2 4.9 84 372-459 3-87 (90)
26 2cpz_A CUG triplet repeat RNA- 98.5 4.6E-07 1.6E-11 73.6 8.2 88 369-461 24-111 (115)
27 2cpx_A Hypothetical protein FL 98.5 8.3E-07 2.8E-11 71.6 9.3 84 369-460 24-110 (115)
28 2la4_A Nuclear and cytoplasmic 98.4 5.5E-07 1.9E-11 71.3 8.1 86 358-454 15-100 (101)
29 3ex7_B RNA-binding protein 8A; 98.4 4.8E-07 1.7E-11 74.3 8.0 89 368-461 20-108 (126)
30 2cq3_A RNA-binding protein 9; 98.4 8.2E-07 2.8E-11 70.6 8.7 85 368-459 13-97 (103)
31 2dgp_A Bruno-like 4, RNA bindi 98.4 1.4E-06 4.7E-11 69.4 10.0 91 368-460 11-101 (106)
32 3mdf_A Peptidyl-prolyl CIS-tra 98.4 3.9E-07 1.3E-11 69.5 6.5 79 368-451 5-83 (85)
33 2dnm_A SRP46 splicing factor; 98.4 6.6E-07 2.2E-11 71.1 7.9 88 367-459 10-97 (103)
34 1oo0_B CG8781-PA, drosophila Y 98.4 6.1E-07 2.1E-11 72.1 7.8 86 368-458 24-109 (110)
35 2cpe_A RNA-binding protein EWS 98.4 8.8E-07 3E-11 71.5 8.7 88 368-459 13-107 (113)
36 1p27_B RNA-binding protein 8A; 98.4 3.7E-07 1.3E-11 72.7 6.3 85 368-457 21-105 (106)
37 2dgv_A HnRNP M, heterogeneous 98.4 6E-07 2E-11 69.6 7.3 83 368-457 6-88 (92)
38 1x4h_A RNA-binding protein 28; 98.4 1.1E-06 3.7E-11 70.3 9.0 89 367-459 12-105 (111)
39 2kn4_A Immunoglobulin G-bindin 98.4 1.2E-06 4.2E-11 74.2 9.8 88 368-460 68-155 (158)
40 2dgs_A DAZ-associated protein 98.4 1E-06 3.4E-11 69.6 8.5 86 368-459 8-93 (99)
41 2cpf_A RNA binding motif prote 98.4 6.8E-07 2.3E-11 70.3 7.3 88 369-460 4-93 (98)
42 3r27_A HnRNP L, heterogeneous 98.4 7.4E-07 2.5E-11 75.2 7.8 78 368-454 19-96 (100)
43 2dnp_A RNA-binding protein 14; 98.4 1.3E-06 4.5E-11 68.0 8.7 79 368-459 7-85 (90)
44 2dnh_A Bruno-like 5, RNA bindi 98.4 8.4E-07 2.9E-11 70.5 7.5 88 368-460 13-102 (105)
45 2cqc_A Arginine/serine-rich sp 98.4 7.9E-07 2.7E-11 69.1 7.0 80 368-452 13-92 (95)
46 2x1f_A MRNA 3'-END-processing 98.4 1.3E-06 4.6E-11 68.7 8.4 82 370-456 2-83 (96)
47 2e5j_A Methenyltetrahydrofolat 98.4 9.8E-07 3.3E-11 69.9 7.6 80 368-457 17-96 (97)
48 2fy1_A RNA-binding motif prote 98.4 1.6E-06 5.4E-11 71.8 9.2 83 368-456 5-87 (116)
49 3bs9_A Nucleolysin TIA-1 isofo 98.4 5.7E-07 1.9E-11 68.9 6.0 81 369-454 5-85 (87)
50 1x5u_A Splicing factor 3B subu 98.4 1.8E-06 6.1E-11 68.6 9.0 83 368-455 13-95 (105)
51 2dgu_A Heterogeneous nuclear r 98.4 1.2E-06 4E-11 70.1 8.0 80 367-459 8-87 (103)
52 1x4a_A Splicing factor, argini 98.4 1.5E-06 5E-11 70.0 8.5 82 368-457 20-101 (109)
53 2do0_A HnRNP M, heterogeneous 98.4 7E-07 2.4E-11 71.9 6.6 85 368-458 13-97 (114)
54 2fc8_A NCL protein; structure 98.4 5.3E-07 1.8E-11 71.4 5.8 84 368-459 13-96 (102)
55 2div_A TRNA selenocysteine ass 98.3 1.4E-06 4.7E-11 68.6 8.1 83 368-455 7-94 (99)
56 2dng_A Eukaryotic translation 98.3 7.1E-07 2.4E-11 71.1 6.5 85 368-459 13-97 (103)
57 2jwn_A Embryonic polyadenylate 98.3 9.3E-07 3.2E-11 72.4 7.3 89 365-459 31-119 (124)
58 1wi8_A EIF-4B, eukaryotic tran 98.3 1.3E-06 4.4E-11 69.8 7.9 84 369-459 14-98 (104)
59 1fj7_A Nucleolin RBD1, protein 98.3 1.2E-06 4.2E-11 69.4 7.7 82 368-456 15-96 (101)
60 2lkz_A RNA-binding protein 5; 98.3 5.7E-07 1.9E-11 73.5 5.9 79 372-452 11-92 (95)
61 2dgt_A RNA-binding protein 30; 98.3 2.3E-06 7.9E-11 66.9 9.1 79 368-459 8-86 (92)
62 2cq0_A Eukaryotic translation 98.3 5.2E-07 1.8E-11 71.7 5.5 88 368-460 13-100 (103)
63 1sjq_A Polypyrimidine tract-bi 98.3 2E-06 7E-11 72.9 9.4 83 368-459 14-96 (105)
64 1x4c_A Splicing factor, argini 98.3 1.7E-06 6E-11 70.0 8.6 80 368-459 13-97 (108)
65 2ki2_A SS-DNA binding protein 98.3 8.5E-07 2.9E-11 68.7 6.4 82 371-458 2-83 (90)
66 2fc9_A NCL protein; structure 98.3 2.4E-06 8.1E-11 67.7 9.1 81 368-457 13-93 (101)
67 3md1_A Nuclear and cytoplasmic 98.3 9.5E-07 3.3E-11 67.1 6.4 79 371-454 2-80 (83)
68 2hzc_A Splicing factor U2AF 65 98.3 1.9E-06 6.7E-11 65.9 8.2 72 368-450 4-85 (87)
69 1x5o_A RNA binding motif, sing 98.3 6.5E-07 2.2E-11 72.3 5.6 83 369-454 24-111 (114)
70 1p1t_A Cleavage stimulation fa 98.3 5E-07 1.7E-11 71.5 4.8 84 367-455 5-88 (104)
71 2e5h_A Zinc finger CCHC-type a 98.3 9.8E-07 3.4E-11 68.6 6.4 78 369-451 15-92 (94)
72 2dgw_A Probable RNA-binding pr 98.3 1.1E-06 3.8E-11 68.4 6.7 81 367-455 7-87 (91)
73 2e44_A Insulin-like growth fac 98.3 2E-06 6.7E-11 67.4 8.1 81 368-456 13-93 (96)
74 2cpi_A CCR4-NOT transcription 98.3 1.3E-06 4.5E-11 71.2 7.1 84 369-456 14-102 (111)
75 2mss_A Protein (musashi1); RNA 98.3 1.5E-06 5.2E-11 65.2 6.8 73 373-451 2-74 (75)
76 2cpd_A Apobec-1 stimulating pr 98.3 2.6E-06 8.9E-11 67.4 8.4 79 368-458 13-92 (99)
77 2cq1_A PTB-like protein L; RRM 98.3 1.4E-06 4.7E-11 72.1 7.0 83 368-459 13-95 (101)
78 2krb_A Eukaryotic translation 98.3 2.8E-06 9.7E-11 65.2 8.3 73 370-449 1-80 (81)
79 2dnq_A RNA-binding protein 4B; 98.3 3.6E-06 1.2E-10 65.6 8.8 79 368-459 6-84 (90)
80 2qfj_A FBP-interacting repress 98.3 2.4E-06 8.1E-11 73.9 8.5 93 362-459 117-209 (216)
81 1fje_B Nucleolin RBD12, protei 98.3 2.3E-06 7.9E-11 72.1 8.2 97 367-470 10-110 (175)
82 2j76_E EIF-4B, EIF4B, eukaryot 98.3 9.4E-07 3.2E-11 70.7 5.5 85 364-454 13-97 (100)
83 2lea_A Serine/arginine-rich sp 98.3 1.6E-06 5.5E-11 73.9 7.1 88 367-459 44-131 (135)
84 2f3j_A RNA and export factor b 98.3 2.7E-06 9.2E-11 76.0 8.8 84 366-455 84-167 (177)
85 2a3j_A U1 small nuclear ribonu 98.3 2.1E-06 7.2E-11 73.7 7.8 80 368-454 27-109 (127)
86 2dh8_A DAZ-associated protein 98.3 2.2E-06 7.5E-11 68.3 7.3 87 367-459 13-99 (105)
87 2khc_A Testis-specific RNP-typ 98.3 1.9E-06 6.5E-11 70.0 7.1 79 368-451 38-116 (118)
88 3lqv_A PRE-mRNA branch site pr 98.3 2.3E-06 7.7E-11 69.3 7.5 83 366-456 4-86 (115)
89 2cqh_A IGF-II mRNA-binding pro 98.2 2E-06 6.8E-11 67.2 6.8 81 368-459 6-87 (93)
90 2kxn_B Transformer-2 protein h 98.2 1.4E-06 4.8E-11 73.9 6.3 85 368-457 44-128 (129)
91 1wf1_A RNA-binding protein RAL 98.2 2.7E-06 9.4E-11 68.7 7.6 77 369-458 26-103 (110)
92 4f25_A Polyadenylate-binding p 98.2 1.5E-06 5E-11 71.5 6.0 78 371-455 6-83 (115)
93 1h2v_Z 20 kDa nuclear CAP bind 98.2 2E-06 6.9E-11 73.4 7.0 90 365-459 34-123 (156)
94 1whx_A Hypothetical protein ri 98.2 2.4E-06 8.4E-11 70.2 7.3 74 369-453 9-82 (111)
95 3md3_A Nuclear and cytoplasmic 98.2 2.2E-06 7.7E-11 70.5 7.0 81 368-453 85-165 (166)
96 1fjc_A Nucleolin RBD2, protein 98.2 1.5E-06 5.3E-11 68.0 5.7 81 365-455 11-91 (96)
97 2cqd_A RNA-binding region cont 98.2 4.5E-06 1.5E-10 67.8 8.6 83 367-455 14-96 (116)
98 1wex_A Hypothetical protein (r 98.2 2.8E-06 9.6E-11 70.5 7.5 81 369-458 14-94 (104)
99 2jrs_A RNA-binding protein 39; 98.2 8.9E-07 3E-11 72.5 4.4 88 362-454 18-105 (108)
100 2jvo_A Nucleolar protein 3; nu 98.2 2.6E-06 9E-11 69.9 7.2 79 364-455 25-103 (108)
101 2hvz_A Splicing factor, argini 98.2 5E-06 1.7E-10 65.8 8.5 76 371-456 1-76 (101)
102 2ad9_A Polypyrimidine tract-bi 98.2 2.1E-06 7.4E-11 74.0 6.8 82 369-460 30-112 (119)
103 2i2y_A Fusion protein consists 98.2 4.8E-06 1.7E-10 70.6 8.8 78 367-454 70-147 (150)
104 1u6f_A Tcubp1, RNA-binding pro 98.2 4.4E-06 1.5E-10 69.6 8.4 87 368-459 40-126 (139)
105 2ytc_A PRE-mRNA-splicing facto 98.2 2.3E-06 7.9E-11 65.4 5.9 73 368-451 10-83 (85)
106 3n9u_C Cleavage and polyadenyl 98.2 3E-06 1E-10 74.5 7.4 81 368-453 53-135 (156)
107 1rk8_A CG8781-PA, CG8781-PA pr 98.2 2.6E-06 8.9E-11 73.9 6.9 87 368-459 70-156 (165)
108 2cpj_A Non-POU domain-containi 98.2 3.8E-06 1.3E-10 66.5 7.1 79 367-456 12-90 (99)
109 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.2 5.2E-06 1.8E-10 68.5 8.2 78 368-450 61-138 (140)
110 2cqp_A RNA-binding protein 12; 98.2 2.1E-06 7.3E-11 67.4 5.6 81 368-453 13-93 (98)
111 2cq4_A RNA binding motif prote 98.2 1.2E-06 4.3E-11 70.9 4.3 83 366-454 21-103 (114)
112 2la6_A RNA-binding protein FUS 98.2 3.5E-06 1.2E-10 66.7 6.7 79 368-451 11-97 (99)
113 1b7f_A Protein (SXL-lethal pro 98.2 4.7E-06 1.6E-10 69.1 7.8 107 370-485 3-111 (168)
114 2err_A Ataxin-2-binding protei 98.2 4.9E-06 1.7E-10 67.8 7.7 91 357-454 15-106 (109)
115 1x4e_A RNA binding motif, sing 98.2 1.6E-06 5.4E-11 66.6 4.5 79 368-451 3-81 (85)
116 1uaw_A Mouse-musashi-1; RNP-ty 98.2 2.4E-06 8.2E-11 64.0 5.3 74 372-451 2-75 (77)
117 1why_A Hypothetical protein ri 98.1 6.7E-06 2.3E-10 64.9 7.9 77 370-457 17-95 (97)
118 1fje_B Nucleolin RBD12, protei 98.1 6.7E-06 2.3E-10 69.3 8.3 76 369-454 98-173 (175)
119 1fxl_A Paraneoplastic encephal 98.1 5.7E-06 1.9E-10 68.1 7.6 107 370-485 2-110 (167)
120 3s7r_A Heterogeneous nuclear r 98.1 4E-06 1.4E-10 64.5 6.2 79 366-450 7-85 (87)
121 2g4b_A Splicing factor U2AF 65 98.1 1.1E-05 3.7E-10 67.5 9.2 98 368-471 2-106 (172)
122 3md3_A Nuclear and cytoplasmic 98.1 6.6E-06 2.3E-10 67.7 7.8 104 371-484 1-108 (166)
123 2ek1_A RNA-binding protein 12; 98.1 3.2E-06 1.1E-10 65.8 5.5 79 369-452 14-92 (95)
124 1wg1_A KIAA1579 protein, homol 98.1 2.8E-06 9.6E-11 66.3 5.1 72 369-452 4-75 (88)
125 1x5p_A Negative elongation fac 98.1 1.3E-05 4.5E-10 63.3 8.9 81 369-462 14-94 (97)
126 2ghp_A U4/U6 snRNA-associated 98.1 5.7E-06 2E-10 75.8 7.7 86 365-455 205-291 (292)
127 3s8s_A Histone-lysine N-methyl 98.1 5.3E-06 1.8E-10 68.8 6.7 79 369-452 5-83 (110)
128 2rs2_A Musashi-1, RNA-binding 98.1 8.4E-06 2.9E-10 66.6 7.8 92 361-458 16-107 (109)
129 2cjk_A Nuclear polyadenylated 98.1 9.6E-06 3.3E-10 67.4 8.3 82 368-455 85-166 (167)
130 2qfj_A FBP-interacting repress 98.1 9.4E-06 3.2E-10 70.2 8.5 86 364-454 22-107 (216)
131 2cpy_A RNA-binding protein 12; 98.1 3.9E-06 1.3E-10 68.7 5.7 80 368-454 13-93 (114)
132 1x4b_A Heterogeneous nuclear r 98.1 1.1E-05 3.8E-10 65.5 8.3 85 368-458 25-109 (116)
133 1iqt_A AUF1, heterogeneous nuc 98.1 8.4E-06 2.9E-10 60.9 7.0 72 373-450 2-73 (75)
134 3egn_A RNA-binding protein 40; 98.1 4.9E-06 1.7E-10 70.0 6.3 89 368-459 43-134 (143)
135 3nmr_A Cugbp ELAV-like family 98.1 5.9E-06 2E-10 68.8 6.5 81 369-452 94-174 (175)
136 1qm9_A Polypyrimidine tract-bi 98.0 9E-06 3.1E-10 70.3 7.5 78 369-455 119-197 (198)
137 2adc_A Polypyrimidine tract-bi 98.0 9.5E-06 3.2E-10 73.0 7.8 77 369-455 150-228 (229)
138 1x4d_A Matrin 3; structural ge 98.0 6E-06 2E-10 69.0 6.0 76 369-453 14-90 (102)
139 2yh0_A Splicing factor U2AF 65 98.0 8.6E-06 2.9E-10 69.5 7.0 83 368-455 112-194 (198)
140 3smz_A Protein raver-1, ribonu 98.0 8.7E-06 3E-10 74.3 7.4 106 360-485 12-117 (284)
141 2pe8_A Splicing factor 45; RRM 98.0 1.5E-05 5E-10 66.2 8.0 83 369-454 7-93 (105)
142 1x4f_A Matrin 3; structural ge 98.0 5.7E-06 2E-10 70.6 5.7 77 369-454 24-101 (112)
143 2xnq_A Nuclear polyadenylated 98.0 1.4E-05 4.6E-10 64.2 7.4 77 364-453 16-93 (97)
144 2nlw_A Eukaryotic translation 98.0 2.4E-05 8.2E-10 63.2 8.9 78 369-453 14-98 (105)
145 2kvi_A Nuclear polyadenylated 98.0 9.4E-06 3.2E-10 64.3 6.3 74 368-454 8-82 (96)
146 1wel_A RNA-binding protein 12; 98.0 2.6E-06 8.9E-11 70.5 3.2 80 367-452 22-101 (124)
147 2dit_A HIV TAT specific factor 98.0 2.4E-05 8.2E-10 64.0 8.7 78 370-455 15-102 (112)
148 2wbr_A GW182, gawky, LD47780P; 98.0 2E-05 6.9E-10 66.3 8.4 71 371-452 8-78 (89)
149 3ns6_A Eukaryotic translation 98.0 4E-06 1.4E-10 67.4 3.8 81 369-454 5-92 (100)
150 1s79_A Lupus LA protein; RRM, 98.0 1.1E-05 3.8E-10 66.3 6.3 76 368-450 9-84 (103)
151 2m2b_A RNA-binding protein 10; 98.0 1.1E-05 3.6E-10 67.6 6.2 82 368-455 21-108 (131)
152 2diu_A KIAA0430 protein; struc 98.0 1.9E-05 6.6E-10 67.5 7.8 74 369-452 8-81 (96)
153 3smz_A Protein raver-1, ribonu 98.0 9.7E-06 3.3E-10 74.0 6.2 84 368-457 182-266 (284)
154 2cqg_A TDP-43, TAR DNA-binding 97.9 1.8E-05 6E-10 62.9 6.9 85 365-456 10-94 (103)
155 2g4b_A Splicing factor U2AF 65 97.9 1.3E-05 4.5E-10 66.9 6.4 78 370-452 94-171 (172)
156 2dnn_A RNA-binding protein 12; 97.9 9.4E-06 3.2E-10 67.9 5.5 77 368-452 14-90 (109)
157 3tyt_A Heterogeneous nuclear r 97.9 1.6E-05 5.5E-10 72.0 7.3 74 369-452 3-77 (205)
158 2yh0_A Splicing factor U2AF 65 97.9 2.6E-05 9E-10 66.5 8.0 82 369-455 3-88 (198)
159 3beg_B Splicing factor, argini 97.9 2.2E-05 7.7E-10 64.6 7.3 67 369-447 15-81 (115)
160 3nmr_A Cugbp ELAV-like family 97.9 1.1E-05 3.8E-10 67.1 5.2 100 369-470 2-106 (175)
161 2ghp_A U4/U6 snRNA-associated 97.9 2.8E-05 9.7E-10 71.2 8.2 96 369-470 116-221 (292)
162 1wg5_A Heterogeneous nuclear r 97.9 1.6E-05 5.6E-10 64.1 5.8 79 368-453 13-92 (104)
163 2lmi_A GRSF-1, G-rich sequence 97.9 1.2E-05 4.3E-10 65.1 5.0 80 366-451 7-88 (107)
164 3pgw_A U1-A; protein-RNA compl 97.8 3.8E-05 1.3E-09 70.0 8.2 80 367-453 6-88 (282)
165 1wez_A HnRNP H', FTP-3, hetero 97.8 8.1E-06 2.8E-10 66.5 3.4 78 368-453 13-90 (102)
166 1qm9_A Polypyrimidine tract-bi 97.8 3E-05 1E-09 67.0 7.1 75 370-454 3-78 (198)
167 1b7f_A Protein (SXL-lethal pro 97.8 1.8E-05 6.2E-10 65.6 5.5 77 369-450 88-166 (168)
168 2db1_A Heterogeneous nuclear r 97.8 1.7E-05 5.8E-10 65.8 5.3 78 367-450 14-93 (118)
169 1l3k_A Heterogeneous nuclear r 97.8 3E-05 1E-09 66.1 6.8 86 368-459 102-187 (196)
170 2hgl_A HNRPF protein, heteroge 97.8 1.5E-05 5.1E-10 69.4 4.9 79 368-452 42-122 (136)
171 4f02_A Polyadenylate-binding p 97.8 2.9E-05 9.9E-10 69.2 6.8 78 369-453 102-179 (213)
172 2e5g_A U6 snRNA-specific termi 97.8 5.5E-05 1.9E-09 59.4 7.6 77 369-457 7-84 (94)
173 1l3k_A Heterogeneous nuclear r 97.8 4E-05 1.4E-09 65.2 7.3 98 367-470 10-115 (196)
174 3pgw_S U1-70K; protein-RNA com 97.8 5.3E-05 1.8E-09 76.8 9.0 83 368-455 100-182 (437)
175 2adc_A Polypyrimidine tract-bi 97.8 7.3E-05 2.5E-09 67.3 8.9 78 368-455 32-110 (229)
176 3q2s_C Cleavage and polyadenyl 97.8 2.3E-05 7.8E-10 72.6 5.7 81 369-454 67-149 (229)
177 2lcw_A RNA-binding protein FUS 97.0 3.2E-06 1.1E-10 68.9 0.0 86 368-457 5-97 (116)
178 2xs2_A Deleted in azoospermia- 97.8 1E-05 3.4E-10 64.2 2.7 79 367-453 6-84 (102)
179 2dnl_A Cytoplasmic polyadenyla 97.8 2.7E-05 9.1E-10 63.8 5.1 76 368-451 6-84 (114)
180 3v4m_A Splicing factor U2AF 65 97.7 9E-05 3.1E-09 61.3 8.1 80 371-454 6-96 (105)
181 2cjk_A Nuclear polyadenylated 97.7 5.7E-05 1.9E-09 62.8 6.9 95 369-470 2-98 (167)
182 3pgw_A U1-A; protein-RNA compl 97.7 6.5E-05 2.2E-09 68.5 7.8 76 368-452 205-280 (282)
183 2hgm_A HNRPF protein, heteroge 97.7 3.7E-05 1.3E-09 66.5 5.9 75 368-450 40-116 (126)
184 3sde_A Paraspeckle component 1 97.7 5.6E-05 1.9E-09 69.5 7.0 76 367-453 19-94 (261)
185 2hgn_A Heterogeneous nuclear r 97.7 2.4E-05 8.1E-10 68.5 4.2 83 365-455 41-123 (139)
186 3ue2_A Poly(U)-binding-splicin 97.7 5.2E-05 1.8E-09 64.6 5.8 82 369-454 19-108 (118)
187 1wf0_A TDP-43, TAR DNA-binding 97.7 0.00012 4.2E-09 56.7 7.3 80 368-459 3-82 (88)
188 2bz2_A Negative elongation fac 97.7 9.1E-05 3.1E-09 62.3 7.1 76 368-456 37-112 (121)
189 1fxl_A Paraneoplastic encephal 97.7 9E-05 3.1E-09 61.0 6.9 73 369-446 87-159 (167)
190 3tyt_A Heterogeneous nuclear r 97.6 0.00013 4.4E-09 66.1 8.3 68 369-439 122-190 (205)
191 4f02_A Polyadenylate-binding p 97.6 9.6E-05 3.3E-09 65.8 7.0 96 370-470 15-114 (213)
192 2cq2_A Hypothetical protein LO 97.5 9.8E-05 3.3E-09 63.6 5.7 81 368-456 23-107 (114)
193 2dha_A FLJ20171 protein; RRM d 97.5 0.00012 4.1E-09 62.7 5.1 76 367-448 20-98 (123)
194 2e5i_A Heterogeneous nuclear r 97.4 0.00036 1.2E-08 60.4 7.4 72 373-455 28-102 (124)
195 3d2w_A TAR DNA-binding protein 97.4 0.00042 1.4E-08 54.9 7.1 81 364-456 5-85 (89)
196 2voo_A Lupus LA protein; RNA-b 97.3 0.00028 9.6E-09 63.6 6.4 80 366-452 105-184 (193)
197 3s6e_A RNA-binding protein 39; 97.3 0.00066 2.3E-08 57.6 7.7 75 370-452 7-90 (114)
198 1sjr_A Polypyrimidine tract-bi 97.3 0.00067 2.3E-08 62.0 8.0 78 371-455 47-124 (164)
199 1jmt_A Splicing factor U2AF 35 97.3 0.00064 2.2E-08 56.0 7.2 38 411-451 65-102 (104)
200 3u1l_A PRE-mRNA-splicing facto 96.9 0.0008 2.7E-08 64.4 5.3 81 367-454 131-228 (240)
201 3zzy_A Polypyrimidine tract-bi 96.9 0.0014 4.9E-08 57.6 6.2 77 369-454 27-105 (130)
202 1owx_A Lupus LA protein, SS-B, 96.5 0.0021 7.2E-08 56.2 4.6 74 366-448 14-89 (121)
203 3tht_A Alkylated DNA repair pr 96.4 0.0028 9.6E-08 63.5 5.3 82 363-452 11-96 (345)
204 2d9o_A DNAJ (HSP40) homolog, s 96.4 0.012 4E-07 49.0 7.9 68 380-459 27-94 (100)
205 3dxb_A Thioredoxin N-terminall 95.4 0.021 7.1E-07 51.1 5.7 82 369-454 123-212 (222)
206 2j8a_A Histone-lysine N-methyl 95.4 0.022 7.7E-07 51.5 5.9 75 371-450 3-91 (136)
207 2dnr_A Synaptojanin-1; RRM dom 93.3 0.17 5.8E-06 42.9 6.4 48 395-455 39-86 (91)
208 1ufw_A Synaptojanin 2; RNP dom 91.3 0.52 1.8E-05 40.4 7.0 49 387-449 41-89 (95)
209 1whv_A Poly(A)-specific ribonu 80.1 1.7 5.9E-05 37.8 4.3 57 371-438 17-73 (100)
210 1uw4_A UPF3X; nonsense mediate 80.0 2.9 0.0001 35.0 5.6 64 372-439 3-70 (91)
211 3ctr_A Poly(A)-specific ribonu 74.6 2.6 8.8E-05 36.7 3.8 58 371-439 7-64 (101)
212 2kn4_A Immunoglobulin G-bindin 66.1 3.7 0.00013 34.4 2.9 25 413-437 12-36 (158)
213 2dhx_A Poly (ADP-ribose) polym 63.1 13 0.00043 32.5 5.7 57 369-433 7-66 (104)
214 2i2y_A Fusion protein consists 54.8 4.8 0.00017 33.7 1.7 55 412-470 11-84 (150)
215 2l08_A Regulator of nonsense t 50.3 12 0.00041 32.1 3.4 63 373-439 12-78 (97)
216 3d45_A Poly(A)-specific ribonu 34.8 46 0.0016 34.7 5.6 55 371-436 441-495 (507)
217 2l9w_A U4/U6 snRNA-associated- 34.7 1E+02 0.0035 27.5 6.9 75 368-450 19-95 (117)
218 1wey_A Calcipressin 1; structu 33.9 1.4E+02 0.0047 25.9 7.5 75 372-457 7-86 (104)
219 2dlx_A UBX domain-containing p 23.2 96 0.0033 27.1 4.8 80 357-437 29-134 (153)
220 1xi6_A Extragenic suppressor; 20.9 93 0.0032 29.1 4.5 76 386-465 57-135 (262)
No 1
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.50 E-value=6.3e-14 Score=128.77 Aligned_cols=153 Identities=19% Similarity=0.288 Sum_probs=119.7
Q ss_pred ccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeee-eCCceee
Q 009405 370 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLL-SNGRPLL 448 (535)
Q Consensus 370 GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~l-s~GRPL~ 448 (535)
++.|++.||++..|..+|.+++. .|+.-..++++... +....|.|||.|.+.++|..||..|+.+++++ ..||||+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFS-QFGPVEKAVVVVDD--RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET--TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred CCcccccCCCCCCCHHHHHHHHH-hcCCeEEEEeeeCC--CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 67899999999999999999885 46666677777652 46778999999999999999999998877753 5699999
Q ss_pred eccCCcCCCCCCCccccceehhhHHHHHHHHHHhhhccccCCCCCcchhhcccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009405 449 GSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKL 528 (535)
Q Consensus 449 ~S~g~~~~p~k~s~f~GHl~i~k~r~q~qrEmr~AVSTSHcSQPNtIEYdmA~eW~Llqek~~~~w~~L~k~~~~El~Kl 528 (535)
.....+..+... .++-.+.+. ++-.+.--+..++++|++.||++++.|..+++...++++.|++++.+|..||
T Consensus 173 v~~~~~~~~~~~---~~~~~~~~~----~~~~~~r~~~p~~~~pgs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 245 (261)
T 3sde_A 173 VEPMEQFDDEDG---LPEKLMQKT----QQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKL 245 (261)
T ss_dssp EEECCCEESSSC---CCGGGSCCC----HHHHHHHTSCSEECCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeccccCccCC---Ccchhhhcc----hhhhhhccCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877765543321 122222221 1222333567899999999999999999999999999999999988888889
Q ss_pred Hhhh
Q 009405 529 KVKL 532 (535)
Q Consensus 529 ka~L 532 (535)
.+.+
T Consensus 246 ~~~~ 249 (261)
T 3sde_A 246 EAEM 249 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.89 E-value=3.1e-09 Score=86.31 Aligned_cols=93 Identities=23% Similarity=0.214 Sum_probs=68.6
Q ss_pred CChHHHHHhhhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhcc
Q 009405 357 LPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE 436 (535)
Q Consensus 357 lPWeerl~~A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~e 436 (535)
+++......-+-+||-||+.||.+..|..||.+++.. |++-..++++. ...+..+-|.|||.|.+.+.|+.||..|+.
T Consensus 6 ~~~~~~~en~~~~gt~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~-d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 83 (99)
T 4fxv_A 6 IHHHHHHENLYFQGTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIR-DKVAGHSLGYGFVNYVTAKDAERAINTLNG 83 (99)
T ss_dssp ----------CCCCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEE-CSSSCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cccccccccccCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEeEeee-cCCCCcccccEEEEECCHHHHHHHHHHhCC
Confidence 5666777788889999999999999999999998865 44444555553 344466778999999999999999999998
Q ss_pred ceeeeeCCceeeeccCCc
Q 009405 437 GCLLLSNGRPLLGSIGTP 454 (535)
Q Consensus 437 gCL~ls~GRPL~~S~g~~ 454 (535)
..| +||||....+.|
T Consensus 84 ~~~---~gr~l~V~~AkP 98 (99)
T 4fxv_A 84 LRL---QSKTIKVSYARP 98 (99)
T ss_dssp CEE---TTEECEEEECCB
T ss_pred CEE---CCEEEEEEEeeC
Confidence 866 999999887755
No 3
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=1.7e-07 Score=75.62 Aligned_cols=94 Identities=18% Similarity=0.252 Sum_probs=77.8
Q ss_pred cCCChHHHHHhhhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhh
Q 009405 355 KELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKL 434 (535)
Q Consensus 355 K~lPWeerl~~A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL 434 (535)
+++++++........++-||+.||.+..|..||.+++.. |+.--.++++.. .|.|||.|.+.+.|+.||..|
T Consensus 10 ~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~-------~g~afV~f~~~~~a~~A~~~l 81 (109)
T 1x4g_A 10 KQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSP-FGQIMEIRVFPE-------KGYSFVRFSTHESAAHAIVSV 81 (109)
T ss_dssp CSCCHHHHHHHSCSSCCEEEEECCSSCCCHHHHHHHHHH-HSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHH
T ss_pred ccCCccccccCCCCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHc
Confidence 457888888888889999999999999999999998875 444445566543 799999999999999999999
Q ss_pred ccceeeeeCCceeeeccCCcCCCCC
Q 009405 435 EEGCLLLSNGRPLLGSIGTPCFTGK 459 (535)
Q Consensus 435 ~egCL~ls~GRPL~~S~g~~~~p~k 459 (535)
+..-+ +||+|....+.+.....
T Consensus 82 ~g~~~---~g~~l~v~~a~~~~~~~ 103 (109)
T 1x4g_A 82 NGTTI---EGHVVKCYWGKESPDMT 103 (109)
T ss_dssp TTCEE---TTEECEEECCCCCCSSC
T ss_pred CCCEE---CCcEEEEEecCCCCCCC
Confidence 98755 89999988887654433
No 4
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=1.3e-07 Score=73.87 Aligned_cols=88 Identities=17% Similarity=0.177 Sum_probs=70.0
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++-||+.||.+..|..||.+++.. |..-..+..|+....+..+.|.|||.|.+.+.|+.||..|+...+ +||||
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 78 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSA-FGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPI 78 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHT-TSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---CCEEE
Confidence 35789999999999999999888865 333333412444445677889999999999999999999999876 89999
Q ss_pred eeccCCcCCCCC
Q 009405 448 LGSIGTPCFTGK 459 (535)
Q Consensus 448 ~~S~g~~~~p~k 459 (535)
....+.+..+..
T Consensus 79 ~v~~a~~~~~~~ 90 (96)
T 1x5t_A 79 TVSYAFKKDSKG 90 (96)
T ss_dssp EEEESCCCCCCC
T ss_pred EEEEecccCCCC
Confidence 998887766554
No 5
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.62 E-value=4.8e-08 Score=74.77 Aligned_cols=85 Identities=14% Similarity=0.179 Sum_probs=66.3
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
+.+-|++.||.+..|..||.+++.+ |+.-..++++....-...+.|.|||.|.+.+.|+.|+..|+...+ +||+|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI---DGQEIT 78 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE---CCeEEE
Confidence 4678999999999999999998865 444444554433322222679999999999999999999999876 999999
Q ss_pred eccCCcCCC
Q 009405 449 GSIGTPCFT 457 (535)
Q Consensus 449 ~S~g~~~~p 457 (535)
.+...+.-|
T Consensus 79 v~~a~~~~~ 87 (88)
T 4a8x_A 79 ATAVLAPWP 87 (88)
T ss_dssp EEEECCCCC
T ss_pred EEECCCCCC
Confidence 888766544
No 6
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=1.2e-07 Score=75.22 Aligned_cols=87 Identities=14% Similarity=0.191 Sum_probs=72.9
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccce-eeeeCCce
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGC-LLLSNGRP 446 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egC-L~ls~GRP 446 (535)
..++-||+.||.+..|..||.+++...|.+-..++++... +..+.|.|||.|.+.+.|+.||..|+... + +||+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---~g~~ 81 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ--TGVSKGYGFVKFTDELEQKRALTECQGAVGL---GSKP 81 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT--TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS---SSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC--CCCccceEEEEECCHHHHHHHHHHccCCccc---CCEe
Confidence 4567899999999999999999998867776677776554 56778999999999999999999999986 5 8999
Q ss_pred eeeccCCcCCCCC
Q 009405 447 LLGSIGTPCFTGK 459 (535)
Q Consensus 447 L~~S~g~~~~p~k 459 (535)
|....+.+....+
T Consensus 82 l~v~~a~~~~~~~ 94 (104)
T 2dhg_A 82 VRLSVAIPKASRV 94 (104)
T ss_dssp CCCCBCCCCCSCC
T ss_pred EEEEEccCCCcCC
Confidence 9988876655544
No 7
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=2.7e-07 Score=73.83 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=70.2
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
..+-||+.||.+..|..||.+++......-..++++.....+...-|.|||.|.+.+.|+.||..|+.|...+ +||+|.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~-~g~~l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL-WGHQIA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB-TTBCCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee-cCCeEE
Confidence 4678999999999999999998877544355566665666667888999999999999999999997553333 899999
Q ss_pred eccCCcCCC
Q 009405 449 GSIGTPCFT 457 (535)
Q Consensus 449 ~S~g~~~~p 457 (535)
...+.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 887765443
No 8
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=8.6e-08 Score=76.25 Aligned_cols=86 Identities=20% Similarity=0.197 Sum_probs=70.7
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++-||+.||.+..|..||.+++.. |.+-..++++.. +..+.|.|||.|.+.++|+.||..|+..-+ +||+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 85 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSP-FGTITSAKVMME---GGRSKGFGFVCFSSPEEATKAVTEMNGRIV---ATKPL 85 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTT-TSCEEEEEEEEC---SSSEEEEEEEEESSHHHHHHHHHHHTTCBS---SSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcC---CCCcCEEEEEEECCHHHHHHHHHHhCCCEe---CCcEE
Confidence 46889999999999999998887764 445555666654 567789999999999999999999999865 99999
Q ss_pred eeccCCcCCCCCC
Q 009405 448 LGSIGTPCFTGKQ 460 (535)
Q Consensus 448 ~~S~g~~~~p~k~ 460 (535)
......+..+..+
T Consensus 86 ~V~~a~~~~~~~~ 98 (103)
T 2d9p_A 86 YVALAQRKEERQS 98 (103)
T ss_dssp EEEECSSCCCCCC
T ss_pred EEEEecccccCCC
Confidence 9988877665543
No 9
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.55 E-value=3.7e-07 Score=72.73 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=64.6
Q ss_pred cEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeeec
Q 009405 371 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 450 (535)
Q Consensus 371 rlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~S 450 (535)
++|+|.||.++.|.+||.+++.+...+--.++++ +...+...-|.|||.|.+.+.|+.||..++.+.. -+||||...
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~-~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~--~~gr~i~V~ 78 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLM-RNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLN--ILGQKVSMH 78 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSS-SCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEE--ETTEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEE-ecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeE--ECCEEEEEE
Confidence 5799999999999999999988754343445544 4445577889999999999999999999876642 289999988
Q ss_pred cCCc
Q 009405 451 IGTP 454 (535)
Q Consensus 451 ~g~~ 454 (535)
.+.|
T Consensus 79 ~a~~ 82 (91)
T 2lxi_A 79 YSDP 82 (91)
T ss_dssp CCCS
T ss_pred EcCC
Confidence 7765
No 10
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.54 E-value=3.2e-07 Score=73.00 Aligned_cols=89 Identities=18% Similarity=0.194 Sum_probs=69.9
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhh-ccceeeeeCCc
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKL-EEGCLLLSNGR 445 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL-~egCL~ls~GR 445 (535)
....+.|+|.||.+..|..||.+++.. |.+-..++++.....+..+.|.|||.|.+.+.|+.||..| +...+ +||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---~g~ 87 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFST-FGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL---YGR 87 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS---SSC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHc-cCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE---CCC
Confidence 346788999999999999999988865 3444445554432456778899999999999999999999 66655 899
Q ss_pred eeeeccCCcCCCCC
Q 009405 446 PLLGSIGTPCFTGK 459 (535)
Q Consensus 446 PL~~S~g~~~~p~k 459 (535)
+|....+.+..+..
T Consensus 88 ~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 88 RLVLEWADSEVTVQ 101 (107)
T ss_dssp BCEEEECCCCCCCC
T ss_pred EEEEEeCCCCCCCC
Confidence 99988887765544
No 11
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.54 E-value=2.4e-07 Score=71.25 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=68.2
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++-|++.||.+..|..||.+++.+ |++-..++++ ....+....|.|||.|.+.++|+.|+ .|+...+ +||+|
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~---~g~~l 77 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTIL-CDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF---RGRQI 77 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGG-GCCEEEEEEE-ESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE---TTEEC
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEE-ecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE---CCcEE
Confidence 45688999999999999999988875 4444455544 34445677899999999999999999 9999876 99999
Q ss_pred eeccCCcCCCC
Q 009405 448 LGSIGTPCFTG 458 (535)
Q Consensus 448 ~~S~g~~~~p~ 458 (535)
......+..|+
T Consensus 78 ~V~~a~~~~pg 88 (89)
T 3ucg_A 78 KVIPKRTNRPG 88 (89)
T ss_dssp EEEETTTTSCC
T ss_pred EEEEccCCCCC
Confidence 98887776654
No 12
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=2.5e-07 Score=73.27 Aligned_cols=88 Identities=17% Similarity=0.204 Sum_probs=69.5
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++.|++.||.+..|..||.+++.. |.+--.+++ +....+..+.|.|||.|.+.+.|+.||..|+...| +||+|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 84 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTI 84 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTT-TSCCCCEEC-CCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE---TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhc-cCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 35788999999999999998888765 333334444 34444567789999999999999999999998765 89999
Q ss_pred eeccCCcCCCCCC
Q 009405 448 LGSIGTPCFTGKQ 460 (535)
Q Consensus 448 ~~S~g~~~~p~k~ 460 (535)
....+.+..+...
T Consensus 85 ~V~~a~~~~~~~~ 97 (102)
T 2cqb_A 85 RVNLAKPMRIKES 97 (102)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEeCCCCCCCCC
Confidence 9988877665553
No 13
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.52 E-value=1.4e-07 Score=73.82 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=66.5
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
...++.||+.||.+..+..||.+.++..|..--...-|... .+..+.|.|||.|.+.+.|+.|+..|+...+ +|||
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS-RSLKMRGQAFVIFKEVSSATNALRSMQGFPF---YDKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC-HHHHHTTCEEEEESSHHHHHHHHHHHTTCEE---TTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE-cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE---CCcE
Confidence 45678999999999999999998888888764333332221 1345569999999999999999999999866 8999
Q ss_pred eeeccCCc
Q 009405 447 LLGSIGTP 454 (535)
Q Consensus 447 L~~S~g~~ 454 (535)
|....+.+
T Consensus 81 l~v~~a~~ 88 (97)
T 1nu4_A 81 MRIQYAKT 88 (97)
T ss_dssp CEEEECSS
T ss_pred EEEEEccC
Confidence 99877655
No 14
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.52 E-value=3.2e-07 Score=74.26 Aligned_cols=91 Identities=19% Similarity=0.213 Sum_probs=71.7
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++-|||.||++..|..||.+++.. |..-..++++.. ..+..+.|.|||.|.+.+.|+.||..|+...| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 87 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKD-MATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---GGRQI 87 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE---TTEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEc-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 46789999999999999999888864 444444555433 23466679999999999999999999998765 99999
Q ss_pred eeccCCcCCCCCCCcc
Q 009405 448 LGSIGTPCFTGKQSKF 463 (535)
Q Consensus 448 ~~S~g~~~~p~k~s~f 463 (535)
....+.+..+.+.+.+
T Consensus 88 ~V~~a~~~~~~~~~~~ 103 (115)
T 2dgo_A 88 RTNWATRKPPAPKSTY 103 (115)
T ss_dssp EEEESSCCCCCSCCCC
T ss_pred EEEEccCCCCCCcccc
Confidence 9998887776665443
No 15
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=4e-07 Score=70.97 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=69.4
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
..+-|++.||.+..|..||.+++.. |.+-...+++ ....+..+.|.|||.|.+.+.|+.||..|+...+ +||+|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 78 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEP-FGKIDNIVLM-KDSDTGRSKGYGFITFSDSECARRALEQLNGFEL---AGRPMR 78 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEE-CCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS---SSSCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEe-ecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee---CCcEEE
Confidence 5688999999999999999888854 3444445544 3334566789999999999999999999999766 899999
Q ss_pred eccCCcCCCCCC
Q 009405 449 GSIGTPCFTGKQ 460 (535)
Q Consensus 449 ~S~g~~~~p~k~ 460 (535)
.....+..+...
T Consensus 79 V~~a~~~~~~~~ 90 (95)
T 2dnz_A 79 VGHVTERLDGGS 90 (95)
T ss_dssp EEESSCCCCCCC
T ss_pred EEEcccccCCCC
Confidence 888877666553
No 16
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=4.3e-07 Score=72.16 Aligned_cols=83 Identities=19% Similarity=0.166 Sum_probs=65.2
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhc---cceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeC
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKE---NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 443 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke---~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~ 443 (535)
...++-||+.||.+..+..|+.++++..|.. -..++++... .. -|.|||.|.+.+.|+.||..|+..-| +
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~-~~---rg~afV~f~~~~~A~~Ai~~l~g~~~---~ 78 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHT-DY---QLKAVVQMENLQDAIGAVNSLHRYKI---G 78 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCC-ST---TCCEEEEESSHHHHHHHHHHHTTEEE---T
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCC-CC---CeEEEEEECCHHHHHHHHHHhCCCEE---C
Confidence 4467889999999999999999777776654 3344444322 11 68999999999999999999998765 8
Q ss_pred CceeeeccCCcCC
Q 009405 444 GRPLLGSIGTPCF 456 (535)
Q Consensus 444 GRPL~~S~g~~~~ 456 (535)
||+|....+.+..
T Consensus 79 gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 79 SKKILVSLATGAS 91 (96)
T ss_dssp TEEEEEEECCCSS
T ss_pred CeEEEEEEcCCCC
Confidence 9999988876543
No 17
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.50 E-value=5.6e-07 Score=70.84 Aligned_cols=87 Identities=16% Similarity=0.077 Sum_probs=68.6
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+-|++.||.+..|..||.+++.. |++-..++++ ....+..+.|.|||.|.+.+.|+.||..|+...+ +||+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 80 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSA-YGPLSELHYP-IDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF---QGRML 80 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECC-CCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES---SSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEE-ecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 35788999999999999999988865 3333344444 3334566789999999999999999999999765 89999
Q ss_pred eeccCCcCCCCC
Q 009405 448 LGSIGTPCFTGK 459 (535)
Q Consensus 448 ~~S~g~~~~p~k 459 (535)
......+..+..
T Consensus 81 ~V~~a~~~~~~~ 92 (99)
T 1whw_A 81 HVLPSTIKKEAS 92 (99)
T ss_dssp EEEECCCCSTTC
T ss_pred EEEEcCCCcccc
Confidence 988887765543
No 18
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=7.9e-07 Score=70.67 Aligned_cols=86 Identities=17% Similarity=0.123 Sum_probs=68.7
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+.||+.||.+..+..||.+++.. |..-..++++.... .+-|.|||.|.+.+.|+.||..|+...| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 85 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQ-IGPCKSCKMITEHT---SNDPYCFVEFYEHRDAAAALAAMNGRKI---LGKEV 85 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHH-HSCEEEEEEECCCC---SSCCEEEEEESSHHHHHHHHHHHTTEEE---TTEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHh-cCCEeEEEEEecCC---CCCCEEEEEECCHHHHHHHHHHhCCCCc---CCCeE
Confidence 45789999999999999999998865 44444555655422 2469999999999999999999998866 89999
Q ss_pred eeccCCcCCCCCC
Q 009405 448 LGSIGTPCFTGKQ 460 (535)
Q Consensus 448 ~~S~g~~~~p~k~ 460 (535)
....+.+....++
T Consensus 86 ~V~~a~~~~~~~~ 98 (103)
T 2cqi_A 86 KVNWATTPSSQKS 98 (103)
T ss_dssp EEEECCCTTCCCC
T ss_pred EEEECCCCccccc
Confidence 9988877655443
No 19
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.49 E-value=1.7e-07 Score=74.71 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=67.9
Q ss_pred HhhhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeC
Q 009405 364 RVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 443 (535)
Q Consensus 364 ~~A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~ 443 (535)
.+..+.++.|++.||.+..|..||++++.. |..-..++++... +....|.|||.|.+.+.|+.||..|+...| +
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~ 96 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVHYDR--SGRSLGTADVHFERKADALKAMKQYNGVPL---D 96 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTCEE---T
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEe---C
Confidence 345567899999999999999999998874 4555666766554 567789999999999999999999999877 8
Q ss_pred Cceeeecc
Q 009405 444 GRPLLGSI 451 (535)
Q Consensus 444 GRPL~~S~ 451 (535)
||+|....
T Consensus 97 g~~l~V~~ 104 (107)
T 3ulh_A 97 GRPMNIQL 104 (107)
T ss_dssp TEECEEEE
T ss_pred CcEEEEEE
Confidence 99998654
No 20
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=5.9e-07 Score=71.06 Aligned_cols=87 Identities=10% Similarity=0.118 Sum_probs=69.3
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+.||+.||.+..|..||.+++.. |.+-..++++. ...+..+.|.|||.|.+.+.|+.||..|+...+ +||+|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 84 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSK-YGQISEVVVVK-DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV---DGRQI 84 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHH-HSCCCEEEECC-CSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT---TSCCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEe-CCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence 45688999999999999999998875 44445555544 333456789999999999999999999998866 89999
Q ss_pred eeccCCcCCCCC
Q 009405 448 LGSIGTPCFTGK 459 (535)
Q Consensus 448 ~~S~g~~~~p~k 459 (535)
......+....+
T Consensus 85 ~v~~a~~~~~~~ 96 (102)
T 1x5s_A 85 RVDQAGKSSDNR 96 (102)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEECCCCCCCC
Confidence 988876655444
No 21
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.48 E-value=4.5e-07 Score=76.46 Aligned_cols=82 Identities=12% Similarity=0.089 Sum_probs=66.0
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++-|++.||.+..+..|+.+++.....+-..++++. ....|.|||.|.+.+.|+.||.+||...| +||+|
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l---~Gr~i 97 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-----RDFDGTGALEFPSEEILVEALERLNNIEF---RGSVI 97 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-----CSSSCCEEEEESSHHHHHHHHHHTTTEEE---TTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-----CCCCCEEEEEECCHHHHHHHHHHcCCCEE---CCeEE
Confidence 35789999999999999999999987653555555542 23679999999999999999999999877 99999
Q ss_pred eeccCCcCCC
Q 009405 448 LGSIGTPCFT 457 (535)
Q Consensus 448 ~~S~g~~~~p 457 (535)
.........|
T Consensus 98 ~V~~a~~~p~ 107 (111)
T 2jvr_A 98 TVERDDNPPP 107 (111)
T ss_dssp EEEESCC---
T ss_pred EEEECCCCCC
Confidence 9887754433
No 22
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.48 E-value=6e-07 Score=73.93 Aligned_cols=87 Identities=20% Similarity=0.182 Sum_probs=70.0
Q ss_pred hhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCc
Q 009405 366 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 445 (535)
Q Consensus 366 A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GR 445 (535)
....++.|++.||.+..+..||.+++.. |++-..++++... +....|.|||.|.+.+.|+.||..|+..-+ +||
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~ 104 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDR--SGRSLGTADVHFERRADALKAMKQYKGVPL---DGR 104 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHT-TSCCSEEEEECCS--SSSCCSEEEEEESSHHHHHHHHHHHTTEES---SSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEECC--CCCEeeEEEEEECCHHHHHHHHHHcCCCEE---CCc
Confidence 4467899999999999999999988865 4444556665544 567889999999999999999999998755 999
Q ss_pred eeeeccCCcCCCC
Q 009405 446 PLLGSIGTPCFTG 458 (535)
Q Consensus 446 PL~~S~g~~~~p~ 458 (535)
+|....+.+....
T Consensus 105 ~l~V~~a~~~~~~ 117 (124)
T 2kt5_A 105 PMDIQLVASQIDL 117 (124)
T ss_dssp EEEEEEECCTTCC
T ss_pred EEEEEEeCCCCCC
Confidence 9988777554433
No 23
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=2.5e-07 Score=73.20 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=65.7
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
..+.||+.||.+..|..||.+++.. |.+--.++++... +..+.|.|||.|.+.++|+.||..|+...+ +||+|.
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 89 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKA-HGTVKDLRLVTNR--AGKPKGLAYVEYENESQASQAVMKMDGMTI---KENIIK 89 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTEES---SSCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECC--CCCEEeEEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence 4678999999999999999888765 3343345555433 566779999999999999999999998655 899999
Q ss_pred eccCCcCCC
Q 009405 449 GSIGTPCFT 457 (535)
Q Consensus 449 ~S~g~~~~p 457 (535)
...+.+..+
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 887766543
No 24
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.47 E-value=2.8e-07 Score=71.88 Aligned_cols=82 Identities=20% Similarity=0.175 Sum_probs=64.7
Q ss_pred hhhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCC
Q 009405 365 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 444 (535)
Q Consensus 365 ~A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~G 444 (535)
.+.+..+-|++.||.+..+..||.+++.+ |.+-...+++.... ..+.|.|||.|.+.+.|+.||..|+...+ +|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~-~G~i~~v~i~~~~~--g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g 84 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQ-AGPLTKVTICKDRE--GKPKSFGFVCFKHPESVSYAIALLNGIRL---YG 84 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTT--SCEEEEEEEEESSTHHHHHHHHHHTTCEE---TT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEECCC--CCCceEEEEEECCHHHHHHHHHHhCCCEE---CC
Confidence 34567899999999999999999888865 34444555554432 56679999999999999999999999866 89
Q ss_pred ceeeeccC
Q 009405 445 RPLLGSIG 452 (535)
Q Consensus 445 RPL~~S~g 452 (535)
|+|.....
T Consensus 85 ~~l~V~~a 92 (95)
T 2ywk_A 85 RPINVSGP 92 (95)
T ss_dssp EECEEECC
T ss_pred CEEEEEEc
Confidence 99986553
No 25
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.47 E-value=1.3e-07 Score=74.23 Aligned_cols=84 Identities=12% Similarity=0.007 Sum_probs=60.8
Q ss_pred EEEEecCCCCCCchhHHHHHHHHhh-ccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeeec
Q 009405 372 LVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 450 (535)
Q Consensus 372 lVlLqNLDPs~tS~eVEDli~~afk-e~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~S 450 (535)
-||+.||.+..|..||.+++.+..- +-..++++.. ..+...-|.|||.|.+.+.|+.||..|+...+ +||+|...
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~-~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~---~gr~i~V~ 78 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN-RANGQSKGFALVGVGSEASSKKLMDLLPKREL---HGQNPVVT 78 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEEC-TTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS---SSCCCEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEec-CCCCccCcEEEEEECCHHHHHHHHHHcCCCee---CCEEEEEE
Confidence 3799999999999999999865331 4555665543 33455678999999999999999999999876 99999988
Q ss_pred cCCcCCCCC
Q 009405 451 IGTPCFTGK 459 (535)
Q Consensus 451 ~g~~~~p~k 459 (535)
...|..|..
T Consensus 79 ~~~~~~~~~ 87 (90)
T 3p5t_L 79 PSNKLEHHH 87 (90)
T ss_dssp CC-------
T ss_pred ECCCCcccc
Confidence 877765544
No 26
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.46 E-value=4.6e-07 Score=73.55 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=70.0
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
.++-||+.||.+..+..||.+++.. |.+-..++++.. ..+..+.|.|||.|.+.+.|+.||..|+...| +||+|.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 98 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMP-FGNVVSAKVFID-KQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI---GMKRLK 98 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGG-GSCCSEEEEEEC-SSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC-CCCCCcCccEEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence 4688999999999999999888764 444445555543 23456678999999999999999999999766 899999
Q ss_pred eccCCcCCCCCCC
Q 009405 449 GSIGTPCFTGKQS 461 (535)
Q Consensus 449 ~S~g~~~~p~k~s 461 (535)
.....+..+.++.
T Consensus 99 V~~a~~~~~~~~~ 111 (115)
T 2cpz_A 99 VQLKRSKNDSKSG 111 (115)
T ss_dssp EECCCCSCCCCCC
T ss_pred EEEcCCCCcCCCC
Confidence 9988777665543
No 27
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=8.3e-07 Score=71.60 Aligned_cols=84 Identities=20% Similarity=0.239 Sum_probs=67.4
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhh-ccc--eeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCc
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFK-ENC--SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 445 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afk-e~C--~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GR 445 (535)
.++.||+.||.+..|..||.+++..... +.| ..+++ +...-|.|||.|.+.+.|+.||..|+..-| +||
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~ 95 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-----TGRMRGQAFITFPNKEIAWQALHLVNGYKL---YGK 95 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-----CSSSCSEEEEECSSHHHHHHHHHHSTTCBC---SSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-----CCccceEEEEEECCHHHHHHHHHHhCCCEe---CCc
Confidence 4789999999999999999988876433 222 23333 456679999999999999999999999765 899
Q ss_pred eeeeccCCcCCCCCC
Q 009405 446 PLLGSIGTPCFTGKQ 460 (535)
Q Consensus 446 PL~~S~g~~~~p~k~ 460 (535)
||....+.+..+..+
T Consensus 96 ~l~v~~a~~~~~~~~ 110 (115)
T 2cpx_A 96 ILVIEFGKNKKQRSS 110 (115)
T ss_dssp BCEEEECCCCSCCCC
T ss_pred EEEEEEccCCCCCCC
Confidence 999998877666554
No 28
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.45 E-value=5.5e-07 Score=71.33 Aligned_cols=86 Identities=23% Similarity=0.201 Sum_probs=69.5
Q ss_pred ChHHHHHhhhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccc
Q 009405 358 PWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG 437 (535)
Q Consensus 358 PWeerl~~A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~eg 437 (535)
..++.++.+...++-||+.||.+..+..||.+++.. |++-..++++ .+.|.|||.|.+.+.|+.||..|+..
T Consensus 15 ~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~~~-------~~~g~afV~f~~~~~A~~Ai~~l~g~ 86 (101)
T 2la4_A 15 AVDHIIRSAPPRVTTAYIGNIPHFATEADLIPLFQN-FGFILDFKHY-------PEKGCCFIKYDTHEQAAVCIVALANF 86 (101)
T ss_dssp HHHHHHTTSCSSCCEEEEESCCTTCCHHHHHHHHHT-TSCCSEEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred hhhhhhhcCCCCCCEEEEcCCCcccCHHHHHHHHHh-CCCEEEEEEe-------cCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 456666677777899999999999999999988755 4444555665 45799999999999999999999987
Q ss_pred eeeeeCCceeeeccCCc
Q 009405 438 CLLLSNGRPLLGSIGTP 454 (535)
Q Consensus 438 CL~ls~GRPL~~S~g~~ 454 (535)
-+ +||+|....+.+
T Consensus 87 ~~---~g~~l~V~~a~~ 100 (101)
T 2la4_A 87 PF---QGRNLRTGWGKE 100 (101)
T ss_dssp EE---TTEECCCCBCCC
T ss_pred eE---CCeEEEEEeccC
Confidence 65 899998776543
No 29
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.45 E-value=4.8e-07 Score=74.27 Aligned_cols=89 Identities=15% Similarity=0.073 Sum_probs=70.5
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++.|||.||.+..|..||.+++.. |.+-..++++. ...+..+.|.|||.|.+.++|+.||..|+...| +||+|
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 94 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNL-DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---MGQPI 94 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCB-CTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS---SSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEe-cCCCCccceEEEEEECCHHHHHHHHHHhCCCee---CCeEE
Confidence 45789999999999999999988764 44433444443 333566789999999999999999999999876 99999
Q ss_pred eeccCCcCCCCCCC
Q 009405 448 LGSIGTPCFTGKQS 461 (535)
Q Consensus 448 ~~S~g~~~~p~k~s 461 (535)
....+.+..+.+..
T Consensus 95 ~v~~a~~~~~~~~~ 108 (126)
T 3ex7_B 95 SVDWCFVRGPPKGK 108 (126)
T ss_dssp EEEESEESSSCCC-
T ss_pred EEEEecCCCCCCCC
Confidence 99988777666543
No 30
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=8.2e-07 Score=70.58 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=67.1
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+-||+.||.+..|..||.+++.+ |..-..++++... ....|.|||.|.+.+.|+.||..|+..-| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 85 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNE---RGSKGFGFVTFENSADADRAREKLHGTVV---EGRKI 85 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGG-TSCEEEEEEECCT---TTTCCEEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecC---CCCcEEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 45689999999999999998887754 3343455555433 23689999999999999999999999866 99999
Q ss_pred eeccCCcCCCCC
Q 009405 448 LGSIGTPCFTGK 459 (535)
Q Consensus 448 ~~S~g~~~~p~k 459 (535)
....+.+..+..
T Consensus 86 ~v~~a~~~~~~~ 97 (103)
T 2cq3_A 86 EVNNATARVMTN 97 (103)
T ss_dssp EEEECCSSCCCC
T ss_pred EEEEcccCCCCC
Confidence 988887765544
No 31
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.43 E-value=1.4e-06 Score=69.40 Aligned_cols=91 Identities=14% Similarity=0.127 Sum_probs=71.4
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+-||+.||.+..|..||.+++... .+-..++++ ....+..+-|.|||.|.+.+.|+.||..|+...++--+||||
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEF-GKIYELTVL-KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHH-SCCCEEECC-CCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEE-ecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 457889999999999999999988763 444445544 334456678999999999999999999999987654478999
Q ss_pred eeccCCcCCCCCC
Q 009405 448 LGSIGTPCFTGKQ 460 (535)
Q Consensus 448 ~~S~g~~~~p~k~ 460 (535)
....+.+......
T Consensus 89 ~v~~a~~~~~~~~ 101 (106)
T 2dgp_A 89 QVKPADSESRGGS 101 (106)
T ss_dssp EEEECCCCSCCCC
T ss_pred EEEECCcccccCC
Confidence 9888876655443
No 32
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.43 E-value=3.9e-07 Score=69.54 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=62.9
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+.|++.||.+..+..||.+++.. |++-...++ ++...+..+.|.|||.|.+.+.|+.|+..|+...+ +||+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 79 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTI 79 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEC-CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhc-cCCEEEEEE-EECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 45789999999999999999888765 333334443 34444566789999999999999999999999866 89999
Q ss_pred eecc
Q 009405 448 LGSI 451 (535)
Q Consensus 448 ~~S~ 451 (535)
....
T Consensus 80 ~v~~ 83 (85)
T 3mdf_A 80 RVNL 83 (85)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 33
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=6.6e-07 Score=71.13 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=67.9
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
.+..+-|||.||.+..|..||.+++.. |.+-..+++ .....+..+.|.|||.|.+.+.|+.||..|+...| +||+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 84 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEK-YGRVGDVYI-PREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL---DGRE 84 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEC-CBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB---TTBC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEE-EeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE---CCcE
Confidence 346789999999999999999888765 333233333 33344466779999999999999999999999865 8999
Q ss_pred eeeccCCcCCCCC
Q 009405 447 LLGSIGTPCFTGK 459 (535)
Q Consensus 447 L~~S~g~~~~p~k 459 (535)
|......+.-+..
T Consensus 85 l~V~~a~~~~~~~ 97 (103)
T 2dnm_A 85 LRVQVARYGRRDL 97 (103)
T ss_dssp CEEEECSSCCSCC
T ss_pred EEEEECCcCCCCC
Confidence 9988876654443
No 34
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.42 E-value=6.1e-07 Score=72.08 Aligned_cols=86 Identities=9% Similarity=0.028 Sum_probs=66.9
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++.|++.||.+..|..||.+++.. |++--.+++ +....+..+.|.|||.|.+.+.|+.||..|+..-| +||+|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l 98 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHL-NLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---MGQTI 98 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEC-CBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---CCcEE
Confidence 45789999999999999998887754 333333444 33334466679999999999999999999999865 89999
Q ss_pred eeccCCcCCCC
Q 009405 448 LGSIGTPCFTG 458 (535)
Q Consensus 448 ~~S~g~~~~p~ 458 (535)
....+.+..|.
T Consensus 99 ~V~~a~~~~~~ 109 (110)
T 1oo0_B 99 QVDWCFVKGPK 109 (110)
T ss_dssp EEEESEESSCC
T ss_pred EEEEcccCCCC
Confidence 98887665553
No 35
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=8.8e-07 Score=71.46 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=68.0
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccc-------eeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENC-------SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL 440 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C-------~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ 440 (535)
...+-||+.||.+..|..||.+++.....-.. .++++ ....+....|.|||.|.+.+.|+.||..|+...|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 90 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIY-LDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF- 90 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECC-BCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE-
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEE-EeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc-
Confidence 46789999999999999998888766332221 23333 3334456678999999999999999999999866
Q ss_pred eeCCceeeeccCCcCCCCC
Q 009405 441 LSNGRPLLGSIGTPCFTGK 459 (535)
Q Consensus 441 ls~GRPL~~S~g~~~~p~k 459 (535)
+||+|....+.+..+..
T Consensus 91 --~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 --QGSKLKVSLARKKPPMN 107 (113)
T ss_dssp --TTEECEEECSSCCCCST
T ss_pred --CCCEEEEEECCCCCCCC
Confidence 89999988887766554
No 36
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=3.7e-07 Score=72.67 Aligned_cols=85 Identities=14% Similarity=0.074 Sum_probs=65.6
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++.||+.||.+..|..||.+++.. |++--..+++ ....+..+.|.|||.|.+.++|+.||..|+...+ +||+|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 95 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLN-LDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---MGQPI 95 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEE-ECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS---SSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-cCCeEEEEEE-ecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE---CCcEE
Confidence 45789999999999999998887754 3333334443 3333456679999999999999999999999865 89999
Q ss_pred eeccCCcCCC
Q 009405 448 LGSIGTPCFT 457 (535)
Q Consensus 448 ~~S~g~~~~p 457 (535)
....+.+..|
T Consensus 96 ~V~~a~~~~~ 105 (106)
T 1p27_B 96 SVDWCFVRGP 105 (106)
T ss_dssp EEEESEESSC
T ss_pred EEEeecCCCC
Confidence 9887765443
No 37
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.41 E-value=6e-07 Score=69.62 Aligned_cols=83 Identities=19% Similarity=0.141 Sum_probs=66.3
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++-|++.||.+..+..||.+++.+ |.+-..++++.. ...+.|.|||.|.+.+.|+.||..|+..-+ +||+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~~~i~~~---~g~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~l 78 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNE-CGHVLYADIKME---NGKSKGCGVVKFESPEVAERACRMMNGMKL---SGREI 78 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHT-TSCEEEEEEEES---SSCEEEEEEEEESSHHHHHHHHHHHTTCCB---TTBCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcc---CCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 46789999999999999999988876 344444555531 345679999999999999999999998765 89999
Q ss_pred eeccCCcCCC
Q 009405 448 LGSIGTPCFT 457 (535)
Q Consensus 448 ~~S~g~~~~p 457 (535)
......+..+
T Consensus 79 ~v~~a~~~~~ 88 (92)
T 2dgv_A 79 DVRIDRNASG 88 (92)
T ss_dssp CCEECSCCSS
T ss_pred EEEEcCCCCC
Confidence 9877765543
No 38
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.41 E-value=1.1e-06 Score=70.35 Aligned_cols=89 Identities=18% Similarity=0.186 Sum_probs=67.6
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhcc-----ceeee
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE-----GCLLL 441 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~e-----gCL~l 441 (535)
...++.|||.||.+..|..||.+++.. |.+-..+++ +....+....|.|||.|.+.++|+.||..|+. +. .+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~-~~ 88 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQ-FGDLKYVRV-VLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL-KL 88 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEEC-CBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE-ES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEE-EecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc-EE
Confidence 456889999999999999999888864 333333443 34444567789999999999999999999993 32 23
Q ss_pred eCCceeeeccCCcCCCCC
Q 009405 442 SNGRPLLGSIGTPCFTGK 459 (535)
Q Consensus 442 s~GRPL~~S~g~~~~p~k 459 (535)
+||+|....+.+..+..
T Consensus 89 -~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 89 -DGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp -SSCEEEEECCCCCCCCC
T ss_pred -cCEEEEEEECCCCccCC
Confidence 89999988887665443
No 39
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.41 E-value=1.2e-06 Score=74.24 Aligned_cols=88 Identities=17% Similarity=0.180 Sum_probs=71.1
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+.||+.||.+..|..||.+++.. |++-..++++ ....+...-|.|||.|.+.+.|+.||..|+..-| +||||
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~v~~~~i~-~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 142 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEK-YGRVGDVYIP-RDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---DGREL 142 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHH-HSCEEEEECC-CCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES---SSSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEe-ecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence 45789999999999999999999844 5554455544 4444567789999999999999999999999765 99999
Q ss_pred eeccCCcCCCCCC
Q 009405 448 LGSIGTPCFTGKQ 460 (535)
Q Consensus 448 ~~S~g~~~~p~k~ 460 (535)
....+.+.-|.++
T Consensus 143 ~v~~a~~~~~~~~ 155 (158)
T 2kn4_A 143 RVQMARYGRPPDS 155 (158)
T ss_dssp EEEEECCSSCCCC
T ss_pred EEEECCCCCCCCC
Confidence 9998877665543
No 40
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=1e-06 Score=69.61 Aligned_cols=86 Identities=13% Similarity=0.117 Sum_probs=67.1
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+-||+.||.+..+..||.+++.+ |.+-..++++ ....+..+.|.|||.|.+.++|+.||. |+..-| +||+|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~---~g~~l 81 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKK-FGVVTEVVMI-YDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI---MGKKV 81 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSS-SSCEEEEEEC-CCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS---SSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEE-eCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE---CCeEE
Confidence 45688999999999999998887765 3343445554 333446678999999999999999998 987655 89999
Q ss_pred eeccCCcCCCCC
Q 009405 448 LGSIGTPCFTGK 459 (535)
Q Consensus 448 ~~S~g~~~~p~k 459 (535)
....+.+.....
T Consensus 82 ~V~~a~~~~~~~ 93 (99)
T 2dgs_A 82 EVKRAEPRDSKS 93 (99)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEECCCCcccC
Confidence 988887765554
No 41
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.39 E-value=6.8e-07 Score=70.26 Aligned_cols=88 Identities=17% Similarity=0.157 Sum_probs=66.6
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCC--CCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAF--ASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~--sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
.++-||+.||.+..|..||.+++.. |.+-..++++....- +....|.|||.|.+.+.|+.||..|+..-+ +||+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSK-VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV---DGHK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE---TTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee---CCeE
Confidence 5688999999999999999888864 333334444432221 124568999999999999999999999865 8999
Q ss_pred eeeccCCcCCCCCC
Q 009405 447 LLGSIGTPCFTGKQ 460 (535)
Q Consensus 447 L~~S~g~~~~p~k~ 460 (535)
|......+..+..+
T Consensus 80 l~V~~a~~~~~~~~ 93 (98)
T 2cpf_A 80 LEVRISERATKPAS 93 (98)
T ss_dssp CEEECSSCSSCCCC
T ss_pred EEEEEccCCCCCCC
Confidence 99888876655443
No 42
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.39 E-value=7.4e-07 Score=75.19 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=66.3
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
.-+++||+.||.+..|..|+.+++.. |++-..++|++ .-|.|||.|.+.++|..||..|+..-+.+ +||||
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~-fG~V~~v~i~~-------~kg~AFVef~~~~~A~~Av~~ln~~~~~i-~Gr~i 89 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQE-FGPISYVVVMP-------KKRQALVEFEDVLGACNAVNYAADNQIYI-AGHPA 89 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHHHSCEEE-TTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEEc-------CCCEEEEEECCHHHHHHHHHHhcCCCcee-CCcEE
Confidence 45789999999999999999998865 67777888874 35899999999999999999999876655 99999
Q ss_pred eeccCCc
Q 009405 448 LGSIGTP 454 (535)
Q Consensus 448 ~~S~g~~ 454 (535)
+-.....
T Consensus 90 ~V~~S~~ 96 (100)
T 3r27_A 90 FVNYSTS 96 (100)
T ss_dssp EEEECSC
T ss_pred EEEeccc
Confidence 9776543
No 43
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=1.3e-06 Score=68.02 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=65.1
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++-||+.||.+..|..||.+++.+ |+.-..++++ .|.|||.|.+.+.|+.||..|+..-+ +||+|
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 73 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFER-RGRVIECDVV---------KDYAFVHMEKEADAKAAIAQLNGKEV---KGKRI 73 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHH-HSCEEEEEEC---------SSCEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHc-CCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 45788999999999999999998876 4444455555 34899999999999999999998755 89999
Q ss_pred eeccCCcCCCCC
Q 009405 448 LGSIGTPCFTGK 459 (535)
Q Consensus 448 ~~S~g~~~~p~k 459 (535)
......+..+..
T Consensus 74 ~v~~a~~~~~~~ 85 (90)
T 2dnp_A 74 NVELSTKGQKKS 85 (90)
T ss_dssp EEEESCCCCCCC
T ss_pred EEEECCCCCCCC
Confidence 998887765544
No 44
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.38 E-value=8.4e-07 Score=70.52 Aligned_cols=88 Identities=14% Similarity=0.094 Sum_probs=68.1
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCC--c
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG--R 445 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~G--R 445 (535)
..++-||+.||.+..|..||.+++.. |.+-..++++... +....|.|||.|.+.+.|+.||..|+...+ .+| |
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~gg~~~ 87 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQP-FGVIDECTVLRGP--DGSSKGCAFVKFSSHTEAQAAIHALHGSQT--MPGASS 87 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECS--SSCEEEEEEEEESSHHHHHHHHHHHSSCCC--CTTCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC--CCCcCcEEEEEeCCHHHHHHHHHHHcCCcc--CCCCCc
Confidence 45889999999999999998888764 3444455555443 356679999999999999999999999865 233 9
Q ss_pred eeeeccCCcCCCCCC
Q 009405 446 PLLGSIGTPCFTGKQ 460 (535)
Q Consensus 446 PL~~S~g~~~~p~k~ 460 (535)
||....+.+.....+
T Consensus 88 ~l~V~~a~~~~~~~~ 102 (105)
T 2dnh_A 88 SLVVKFADTDKESGP 102 (105)
T ss_dssp CCEEEESCSSCCCSC
T ss_pred cEEEEECccCcccCC
Confidence 999888776655443
No 45
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.37 E-value=7.9e-07 Score=69.08 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=62.6
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++.|++.||.+..+..||.+++.. |.+-...+++ ....+..+.|.|||.|.+.+.|+.||..|+..-+ +||+|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 87 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIV-YDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---DGRRI 87 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHT-TSCEEEEEEE-ECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE---TTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEE-EcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 45788999999999999999888865 3333344443 3333456678999999999999999999998755 89999
Q ss_pred eeccC
Q 009405 448 LGSIG 452 (535)
Q Consensus 448 ~~S~g 452 (535)
.....
T Consensus 88 ~v~~a 92 (95)
T 2cqc_A 88 RVSGP 92 (95)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 86654
No 46
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.37 E-value=1.3e-06 Score=68.73 Aligned_cols=82 Identities=20% Similarity=0.131 Sum_probs=64.7
Q ss_pred ccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeee
Q 009405 370 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 449 (535)
Q Consensus 370 GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~ 449 (535)
.+.|++.||.+..+..||.+++.. |+.-..++++ ....+....|.|||.|.+.+.|+.||..|+...+ +||+|..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V 76 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSN-VGPVINLKMM-FDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL---GSRFLKC 76 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECC-BCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEE-eCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE---CCeEEEE
Confidence 468999999999999998888765 3333344443 3344566789999999999999999999999766 9999998
Q ss_pred ccCCcCC
Q 009405 450 SIGTPCF 456 (535)
Q Consensus 450 S~g~~~~ 456 (535)
..+.+..
T Consensus 77 ~~a~~~~ 83 (96)
T 2x1f_A 77 GYSSNSD 83 (96)
T ss_dssp EECSCSS
T ss_pred EEcCCCC
Confidence 8776543
No 47
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=9.8e-07 Score=69.85 Aligned_cols=80 Identities=11% Similarity=-0.001 Sum_probs=65.3
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
+..+-|++.||.+..|..||.+++.....-.| +++. +.+.|.|||.|.+.+.|+.||..|+...+ +||+|
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~--~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 86 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPL--RLTW-----QGPRRRAFLHYPDSAAAQQAVSCLQGLRL---GTDTL 86 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCS--EEEE-----ETTTTEEEEECSSHHHHHHHHHHHTTCCS---SSSCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEE--EEEc-----CCCCcEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 45789999999999999999999877544333 4442 46789999999999999999999999866 89999
Q ss_pred eeccCCcCCC
Q 009405 448 LGSIGTPCFT 457 (535)
Q Consensus 448 ~~S~g~~~~p 457 (535)
....+.+..|
T Consensus 87 ~V~~a~~~~~ 96 (97)
T 2e5j_A 87 RVALARQQRD 96 (97)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCCC
Confidence 9887766433
No 48
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.36 E-value=1.6e-06 Score=71.83 Aligned_cols=83 Identities=12% Similarity=0.153 Sum_probs=67.4
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
+..+-||+.||++..|..||.+++.. |+.-..++++... +....|.|||.|.+.+.|+.||..|+..-+ +||+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~--~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~---~g~~l 78 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGK-HGPISEVLLIKDR--TSKSRGFAFITFENPADAKNAAKDMNGKSL---HGKAI 78 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHT-SSCCSEEEEECST--TTTCCCEEEEECSSHHHHHHHHHHCSSCBC---SSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECC--CCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 45688999999999999999988864 4444455665544 577889999999999999999999998866 99999
Q ss_pred eeccCCcCC
Q 009405 448 LGSIGTPCF 456 (535)
Q Consensus 448 ~~S~g~~~~ 456 (535)
....+.+..
T Consensus 79 ~V~~a~~~~ 87 (116)
T 2fy1_A 79 KVEQAKKPS 87 (116)
T ss_dssp EEEECCCSS
T ss_pred EEEECCCCC
Confidence 987775543
No 49
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.36 E-value=5.7e-07 Score=68.88 Aligned_cols=81 Identities=20% Similarity=0.236 Sum_probs=62.7
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
.++-|++.||.+..+..||.+++.+ +++-...+++ +...+..+.|.|||.|.+.+.|+.|+..|+...+ +||+|.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 79 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAP-FGRISDARVV-KDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---GGRQIR 79 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEE-ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEE-ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCeEEE
Confidence 5688999999999999999888764 3443344444 3333466789999999999999999999998765 999998
Q ss_pred eccCCc
Q 009405 449 GSIGTP 454 (535)
Q Consensus 449 ~S~g~~ 454 (535)
...+.+
T Consensus 80 v~~a~~ 85 (87)
T 3bs9_A 80 TNWATR 85 (87)
T ss_dssp EEEEC-
T ss_pred EEecCC
Confidence 766544
No 50
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=1.8e-06 Score=68.63 Aligned_cols=83 Identities=17% Similarity=0.216 Sum_probs=65.5
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+-||+.||.+..|..||.+++.+ |.+-..++++ ....+..+.|.|||.|.+.+.|+.||..|+...| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 87 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQ-AGPVVNTHMP-KDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL---YGKPI 87 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECC-BCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC---SSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEE-ecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE---CCeEE
Confidence 45688999999999999999888865 3333344443 3334566789999999999999999999998766 89999
Q ss_pred eeccCCcC
Q 009405 448 LGSIGTPC 455 (535)
Q Consensus 448 ~~S~g~~~ 455 (535)
....+.+.
T Consensus 88 ~v~~a~~~ 95 (105)
T 1x5u_A 88 RVNKASAH 95 (105)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 98776554
No 51
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.36 E-value=1.2e-06 Score=70.06 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=65.3
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
....+.||+.||.+..|..||.+++.+ |.+-..++++ .|.|||.|.+.++|+.||..|+..-| +||+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 74 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQ-FGKLERVKKL---------KDYAFIHFDERDGAVKAMEEMNGKDL---EGEN 74 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHH-HSCEEEEEEC---------SSCEEEEESSHHHHHHHHHHHTTEEE---TTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEE---------CCEEEEEeCCHHHHHHHHHHHCCCcc---CCCE
Confidence 345688999999999999999998876 4444444544 46899999999999999999999865 8999
Q ss_pred eeeccCCcCCCCC
Q 009405 447 LLGSIGTPCFTGK 459 (535)
Q Consensus 447 L~~S~g~~~~p~k 459 (535)
|......+....+
T Consensus 75 l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 75 IEIVFAKPPDQKR 87 (103)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEcCCCcccc
Confidence 9998887765544
No 52
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=1.5e-06 Score=69.97 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=64.2
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+.|||.||.+..|..||.+++.+ |..-..++++. +.-+.|.|||.|.+.+.|+.||..|+...| +||+|
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 91 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYK-YGAIRDIDLKN----RRGGPPFAFVEFEDPRDAEDAVYGRDGYDY---DGYRL 91 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEECC----SSSSSCCEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEE----CCCCCcEEEEEECCHHHHHHHHHHcCCCEE---CCeEE
Confidence 45689999999999999999888766 33333344422 223579999999999999999999999865 89999
Q ss_pred eeccCCcCCC
Q 009405 448 LGSIGTPCFT 457 (535)
Q Consensus 448 ~~S~g~~~~p 457 (535)
......+..+
T Consensus 92 ~V~~a~~~~~ 101 (109)
T 1x4a_A 92 RVEFPRSGRG 101 (109)
T ss_dssp EEECCCCCCC
T ss_pred EEEEcccCCC
Confidence 9888766543
No 53
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=7e-07 Score=71.95 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=67.5
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++-|||.||.+..+..||.+++.+ |.+-..++++... ...+.|.|||.|.+.+.|+.||..|+..-| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 86 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSM-AGVVVRADILEDK--DGKSRGIGTVTFEQSIEAVQAISMFNGQLL---FDRPM 86 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECT--TCSEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC--CCCeeeEEEEEECCHHHHHHHHHHhCCCEe---CCCEE
Confidence 45788999999999999999988875 3444455555443 256678999999999999999999999866 89999
Q ss_pred eeccCCcCCCC
Q 009405 448 LGSIGTPCFTG 458 (535)
Q Consensus 448 ~~S~g~~~~p~ 458 (535)
.........|.
T Consensus 87 ~v~~a~~~~~~ 97 (114)
T 2do0_A 87 HVKMDERALPK 97 (114)
T ss_dssp EEEECSCCCCC
T ss_pred EEEEcccCCCC
Confidence 98877654444
No 54
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=5.3e-07 Score=71.35 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=65.5
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+-||+.||.+..|..||.+++. .-..++++. ...+..+.|.|||.|.+.+.|+.||..|+..-| +||+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~----~~~~~~~~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 84 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFD----GSVRARIVT-DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI---DGNKV 84 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTST----TCSEEEEEE-CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhc----CCeEEEEEe-cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE---CCeEE
Confidence 4568899999999999999877665 223445443 223456678999999999999999999999765 89999
Q ss_pred eeccCCcCCCCC
Q 009405 448 LGSIGTPCFTGK 459 (535)
Q Consensus 448 ~~S~g~~~~p~k 459 (535)
....+.+.....
T Consensus 85 ~V~~a~~~~~~~ 96 (102)
T 2fc8_A 85 TLDWAKPKGEGG 96 (102)
T ss_dssp EEEECCCCCSSS
T ss_pred EEEEecCCCCCC
Confidence 988887765543
No 55
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=1.4e-06 Score=68.63 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=65.3
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccc-eeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENC-SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C-~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
...+-||+.||.+..+..||.+++.+. .+-. .++++.. ..+..+.|.|||.|.+.+.|+.||..|+...+ +||+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 81 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATM-GETVMSVKIIRN-RLTGIPAGYCFVEFADLATAEKCLHKINGKPL---PGAT 81 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHT-TCCCCEEEEEEC-SSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE---SSCS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHh-CCcceEEEEeec-CCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc---CCCC
Confidence 467889999999999999999988763 3333 5666543 23455678999999999999999999999876 8998
Q ss_pred ----eeeccCCcC
Q 009405 447 ----LLGSIGTPC 455 (535)
Q Consensus 447 ----L~~S~g~~~ 455 (535)
|....+.+.
T Consensus 82 ~~~~l~v~~a~~~ 94 (99)
T 2div_A 82 PAKRFKLNYATYS 94 (99)
T ss_dssp SCEECCEEETTCC
T ss_pred cceeEEEeecCCC
Confidence 776666544
No 56
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.35 E-value=7.1e-07 Score=71.13 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=66.2
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+.||+.||.+..|..||.+++... . -..++++ ....+..+.|.|||.|.+.+.|+.|| .|+...| +||+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~-~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l 85 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDL-S-IRSVRLV-RDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL---GDRSL 85 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTS-C-EEEEEEE-ECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE---TTEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC-C-ceEEEEe-ecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE---CCeEE
Confidence 346899999999999999998887654 2 3334443 33444666789999999999999999 9998755 89999
Q ss_pred eeccCCcCCCCC
Q 009405 448 LGSIGTPCFTGK 459 (535)
Q Consensus 448 ~~S~g~~~~p~k 459 (535)
......+..+.+
T Consensus 86 ~V~~a~~~~~~~ 97 (103)
T 2dng_A 86 RVDIAEGRKQDK 97 (103)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEecCCCCCC
Confidence 988877655544
No 57
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.35 E-value=9.3e-07 Score=72.40 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=70.0
Q ss_pred hhhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCC
Q 009405 365 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 444 (535)
Q Consensus 365 ~A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~G 444 (535)
.....++.||+.||.+..|..||.+++.+ |++-..++++. ...+....|.|||.|.+.+.|+.|| .|+...| +|
T Consensus 31 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~-~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g 104 (124)
T 2jwn_A 31 KKEIDKRSVYVGNVDYGSTAQDLEAHFSS-CGSINRITILC-DKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF---RG 104 (124)
T ss_dssp HHHHHHTEEEEEEECTTCCHHHHHHHHHT-TSCEEEEEEEE-ECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE---TT
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEe-cCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE---CC
Confidence 44567899999999999999999988875 34433455443 3345667899999999999999999 8998866 99
Q ss_pred ceeeeccCCcCCCCC
Q 009405 445 RPLLGSIGTPCFTGK 459 (535)
Q Consensus 445 RPL~~S~g~~~~p~k 459 (535)
|+|......+..|+.
T Consensus 105 ~~l~V~~a~~~~~~~ 119 (124)
T 2jwn_A 105 RTIKVLPKRTNMPGI 119 (124)
T ss_dssp EECEEEESSCCCSSC
T ss_pred eEEEEEECCCCCCCC
Confidence 999988877665554
No 58
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.34 E-value=1.3e-06 Score=69.78 Aligned_cols=84 Identities=12% Similarity=0.117 Sum_probs=65.0
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCC-CCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFA-SPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~s-spn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..+-||+.||.+..|..||.+++.+. + -..++++ ....+ ..+.|.|||.|.+.+.|+.|| .|+...| +||+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-i~~v~i~-~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l 86 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGL-N-ISAVRLP-REPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---GNKRI 86 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTS-C-EEEEECC-BCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE---TTEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHC-C-ceEEEEe-cCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe---CCcEE
Confidence 45889999999999999998887653 2 3344443 33322 566799999999999999999 9998865 99999
Q ss_pred eeccCCcCCCCC
Q 009405 448 LGSIGTPCFTGK 459 (535)
Q Consensus 448 ~~S~g~~~~p~k 459 (535)
......+..+..
T Consensus 87 ~V~~a~~~~~~~ 98 (104)
T 1wi8_A 87 RVDVADQAQDKD 98 (104)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEccCCCCCC
Confidence 988877665544
No 59
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.34 E-value=1.2e-06 Score=69.36 Aligned_cols=82 Identities=13% Similarity=0.008 Sum_probs=64.8
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+-||+.||.+..|..||.+++.....-.. ++ .....+....|.|||.|.+.+.|+.||. |+..-+ +||+|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--~~-~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~---~g~~l 87 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND--LA-VVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV---FGNEI 87 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--CC-CCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB---TTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce--EE-EecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE---CCcEE
Confidence 35788999999999999999999988554333 22 2333345678999999999999999998 998766 79999
Q ss_pred eeccCCcCC
Q 009405 448 LGSIGTPCF 456 (535)
Q Consensus 448 ~~S~g~~~~ 456 (535)
....+.+..
T Consensus 88 ~V~~a~~~~ 96 (101)
T 1fj7_A 88 KLEKPKGRD 96 (101)
T ss_dssp EEECCSCCC
T ss_pred EEEEcCCCC
Confidence 987776543
No 60
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.34 E-value=5.7e-07 Score=73.53 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=61.2
Q ss_pred EEEEecCCCCCCchhHHHHHHHHhh-ccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccce--eeeeCCceee
Q 009405 372 LVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGC--LLLSNGRPLL 448 (535)
Q Consensus 372 lVlLqNLDPs~tS~eVEDli~~afk-e~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egC--L~ls~GRPL~ 448 (535)
-|+|.||+|..|.++|.+++..-.. +-+.++++ +...+...-|.|||.|.+.+.|+.||..|+..- +.+ +||||.
T Consensus 11 tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~-~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i-~Gr~i~ 88 (95)
T 2lkz_A 11 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLI-KDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI-DGKTIG 88 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECC-CCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE-TTEEEE
T ss_pred EEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEE-ecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE-CCEEEE
Confidence 4899999999999998887765333 34556554 444556778999999999999999999999863 223 999998
Q ss_pred eccC
Q 009405 449 GSIG 452 (535)
Q Consensus 449 ~S~g 452 (535)
.+.+
T Consensus 89 V~~A 92 (95)
T 2lkz_A 89 VDFA 92 (95)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7654
No 61
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=2.3e-06 Score=66.91 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=64.5
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+-||+.||.+..|..||.+++.. |..-..++++ .|.|||.|.+.+.|+.||..|+..-+ +||+|
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~v~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 74 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEE-YGPVIECDIV---------KDYAFVHMERAEDAVEAIRGLDNTEF---QGKRM 74 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHT-TSCCCEEEEC---------SSEEEEEESCHHHHHHHHHHHTTEEE---TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEE---------CCEEEEEECCHHHHHHHHHHhCCCee---CCcEE
Confidence 46789999999999999999988866 4444455554 34899999999999999999999866 89999
Q ss_pred eeccCCcCCCCC
Q 009405 448 LGSIGTPCFTGK 459 (535)
Q Consensus 448 ~~S~g~~~~p~k 459 (535)
......+.....
T Consensus 75 ~V~~a~~~~~~~ 86 (92)
T 2dgt_A 75 HVQLSTSRLRTA 86 (92)
T ss_dssp EEEESSCCCSCC
T ss_pred EEEEccCCCCCC
Confidence 988887654433
No 62
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.34 E-value=5.2e-07 Score=71.71 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=67.6
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++.|++.||.+..|..||.+++.+ |.+-..+++ +....+..+.|.|||.|.+.+.|+.||..|+..-+ +||+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 87 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRP-FGSISRIYL-AKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY---DHLIL 87 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTT-TCCEEEEEE-EECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEE-eecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee---CCcEE
Confidence 45788999999999999998877654 233333443 33334456678999999999999999999998865 89999
Q ss_pred eeccCCcCCCCCC
Q 009405 448 LGSIGTPCFTGKQ 460 (535)
Q Consensus 448 ~~S~g~~~~p~k~ 460 (535)
......+..+..+
T Consensus 88 ~v~~a~~~~~~~~ 100 (103)
T 2cq0_A 88 NVEWAKPSTNSGP 100 (103)
T ss_dssp EEEESSCCCCSCC
T ss_pred EEEECCCCCCCCC
Confidence 9888877665543
No 63
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.33 E-value=2e-06 Score=72.93 Aligned_cols=83 Identities=18% Similarity=0.164 Sum_probs=67.3
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++.||+.||.+..|..||++++-. |++-..++++.. -|.|||.|.+.+.|+.||..|+..-..+ +||||
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~-fG~V~~v~i~~~-------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l-~Gr~l 84 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVL-RGQPI 84 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHH-HCCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTSCCEE-TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHhccCCceE-CCEEE
Confidence 45789999999999999999998865 677777887752 5999999999999999999997532223 89999
Q ss_pred eeccCCcCCCCC
Q 009405 448 LGSIGTPCFTGK 459 (535)
Q Consensus 448 ~~S~g~~~~p~k 459 (535)
....+.+.....
T Consensus 85 ~V~~A~~~~~~~ 96 (105)
T 1sjq_A 85 YIQFSNHKELKT 96 (105)
T ss_dssp CBCCCSSSSCCC
T ss_pred EEEEcCCCCCCc
Confidence 988886655444
No 64
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.33 E-value=1.7e-06 Score=70.00 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=66.5
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCC---
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG--- 444 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~G--- 444 (535)
..++-||+.||.+..|..||.+++.+ |.+-..++++.. |.|||.|.+.+.|+.||..|+...| +|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~~ 80 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKLDNTKF---RSHEG 80 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEETT--------TEEEEEESSHHHHHHHHHHSSSEEE---ECTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEecC--------CEEEEEECCHHHHHHHHHHHCcCCc---cCCcC
Confidence 35788999999999999999998864 445556666543 9999999999999999999999876 78
Q ss_pred --ceeeeccCCcCCCCC
Q 009405 445 --RPLLGSIGTPCFTGK 459 (535)
Q Consensus 445 --RPL~~S~g~~~~p~k 459 (535)
|+|....+.+..+..
T Consensus 81 ~~~~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 81 ETAYIRVKVDGPRSPSY 97 (108)
T ss_dssp CEEEEEEEESSCCSCCC
T ss_pred cceEEEEEeCCCCCCCC
Confidence 999988888766655
No 65
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.33 E-value=8.5e-07 Score=68.72 Aligned_cols=82 Identities=22% Similarity=0.181 Sum_probs=62.7
Q ss_pred cEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeeec
Q 009405 371 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 450 (535)
Q Consensus 371 rlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~S 450 (535)
|-|++.||.+..+..||.+++.+ |++--.++++ ....+..+.|.|||.|.+.+ |+.|+..|+...+ +||+|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~-~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~---~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQ-FGKVFNVKLI-YDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF---MGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHH-HTCCSEEEEC-CCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC---SSSSCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHh-cCCEEEEEEE-EcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE---CCeEEEEE
Confidence 46899999999999999998876 4444445544 44445677899999999999 9999999999876 89999988
Q ss_pred cCCcCCCC
Q 009405 451 IGTPCFTG 458 (535)
Q Consensus 451 ~g~~~~p~ 458 (535)
.+.+..+.
T Consensus 76 ~a~~~~~~ 83 (90)
T 2ki2_A 76 EANPKKSL 83 (90)
T ss_dssp EC------
T ss_pred EcCCCCCC
Confidence 87665443
No 66
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=2.4e-06 Score=67.70 Aligned_cols=81 Identities=19% Similarity=0.169 Sum_probs=64.0
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+.||+.||.+..|..||.+++.+ --..+++. . ......|.|||.|.+.+.|+.||..|+..-| +||+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~----~g~v~~~~-~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 83 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEK----ATFIKVPQ-N-QNGKSKGYAFIEFASFEDAKEALNSCNKREI---EGRAI 83 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSS----CSEEECCB-C-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE---TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh----CCEEEEEE-C-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe---CCeEE
Confidence 45789999999999999988777544 23344433 3 4466789999999999999999999998765 89999
Q ss_pred eeccCCcCCC
Q 009405 448 LGSIGTPCFT 457 (535)
Q Consensus 448 ~~S~g~~~~p 457 (535)
......+...
T Consensus 84 ~v~~a~~~~~ 93 (101)
T 2fc9_A 84 RLELQGPRGS 93 (101)
T ss_dssp EEEECSSCCC
T ss_pred EEEEcCCCCC
Confidence 9888766543
No 67
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.32 E-value=9.5e-07 Score=67.08 Aligned_cols=79 Identities=18% Similarity=0.216 Sum_probs=62.6
Q ss_pred cEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeeec
Q 009405 371 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 450 (535)
Q Consensus 371 rlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~S 450 (535)
.-|++.||++..+..||.+++.. +++-..++++. ...+....|.|||.|.+.+.|+.|+..|+..-+ +||||...
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~-~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~l~v~ 76 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMW-DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL---NGRPLRIN 76 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTT-STTEEEEEEEE-CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEE-cCCCCCccceEEEEECCHHHHHHHHHHhcCCee---CCcEEEEE
Confidence 45899999999999999988865 34444455543 333466689999999999999999999998866 89999977
Q ss_pred cCCc
Q 009405 451 IGTP 454 (535)
Q Consensus 451 ~g~~ 454 (535)
.+.+
T Consensus 77 ~a~~ 80 (83)
T 3md1_A 77 WAAK 80 (83)
T ss_dssp ECCC
T ss_pred ecCc
Confidence 6654
No 68
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.32 E-value=1.9e-06 Score=65.89 Aligned_cols=72 Identities=10% Similarity=0.092 Sum_probs=58.1
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHh---h-------ccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccc
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAF---K-------ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG 437 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~af---k-------e~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~eg 437 (535)
...+-|++.||++..|..||.+++.+.+ + +-..+++.. .-|.|||.|.+.+.|+.|+ .|+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-------~kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-------DKNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-------SSSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-------CCcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4578899999999999999999998864 3 323333332 2799999999999999999 99988
Q ss_pred eeeeeCCceeeec
Q 009405 438 CLLLSNGRPLLGS 450 (535)
Q Consensus 438 CL~ls~GRPL~~S 450 (535)
-+ +||+|...
T Consensus 76 ~~---~g~~l~V~ 85 (87)
T 2hzc_A 76 IF---QGQSLKIR 85 (87)
T ss_dssp EE---TTEECEEE
T ss_pred EE---CCeEEEEe
Confidence 65 89998754
No 69
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=6.5e-07 Score=72.34 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=63.8
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhcccee-----eeeC
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL-----LLSN 443 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL-----~ls~ 443 (535)
..+-||+.||.+..|..||.+++.. |.+-..++++... +..+-|.|||.|.+.+.|+.||..|+...+ +...
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKP-FGQVISTRILRDS--SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEEECS--SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4578999999999999998877654 3344445555443 566779999999999999999999998866 2236
Q ss_pred CceeeeccCCc
Q 009405 444 GRPLLGSIGTP 454 (535)
Q Consensus 444 GRPL~~S~g~~ 454 (535)
||||....+.|
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 88888777653
No 70
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=5e-07 Score=71.51 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=66.4
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
.+..|-|++.||.+..+..||.+++.. |+.-...+++.. ..+..+.|.|||.|.+.+.|+.||..|+...+ +||+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 79 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSE-VGPVVSFRLVYD-RETGKPKGYGFCEYQDQETALSAMRNLNGREF---SGRA 79 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHT-TSCCSEEEEEEE-TTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC---SSSC
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHh-cCCeeEEEEEeC-CCCCccceEEEEEECCHHHHHHHHHHhCCCee---CCcE
Confidence 456688999999999999999988865 444445555432 23456679999999999999999999998866 9999
Q ss_pred eeeccCCcC
Q 009405 447 LLGSIGTPC 455 (535)
Q Consensus 447 L~~S~g~~~ 455 (535)
|......+.
T Consensus 80 l~v~~a~~~ 88 (104)
T 1p1t_A 80 LRVDNAASE 88 (104)
T ss_dssp BEEEETTCT
T ss_pred EEEEeCCCc
Confidence 997766543
No 71
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=9.8e-07 Score=68.64 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=60.7
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
..+.|++.||.+..+..||.+++.. |.+-..+++ +....+..+.|.|||.|.+.+.|+.||..|+..-+ +||+|.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 89 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSK-YGKVVKVTI-MKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL---FGRVIK 89 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTT-TSCEEEEEE-CCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE---TTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEE-EeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee---CCcEEE
Confidence 5688999999999999998877754 333333444 33344466789999999999999999999998765 899998
Q ss_pred ecc
Q 009405 449 GSI 451 (535)
Q Consensus 449 ~S~ 451 (535)
...
T Consensus 90 v~~ 92 (94)
T 2e5h_A 90 ASI 92 (94)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 72
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.31 E-value=1.1e-06 Score=68.40 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=63.9
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
...++.|++.||.+..|..||.+++... .-..++++.. -+....|.|||.|.+.+.|+.||. |+..-+ +||+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~--~i~~v~i~~~--~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~---~gr~ 78 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL--KPVAIRIVRN--AHGNKTGYIFVDFSNEEEVKQALK-CNREYM---GGRY 78 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS--CCSEEEEEEC--TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE---TTEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC--CceEEEEEEC--CCCCCceEEEEEECCHHHHHHHHH-hCCcee---CCcE
Confidence 3567899999999999999988887654 4445555543 345668999999999999999999 998765 9999
Q ss_pred eeeccCCcC
Q 009405 447 LLGSIGTPC 455 (535)
Q Consensus 447 L~~S~g~~~ 455 (535)
|......+.
T Consensus 79 i~v~~a~~~ 87 (91)
T 2dgw_A 79 IEVFREKSG 87 (91)
T ss_dssp EEEEEESSC
T ss_pred EEEEECCcC
Confidence 987665443
No 73
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=2e-06 Score=67.39 Aligned_cols=81 Identities=14% Similarity=0.076 Sum_probs=64.2
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++-|++.||.+..|..||.+++.+. +.-..++.|+. ++.+|+|||.|.+.+.|+.||..|+..-| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~~~~i~~----~~~~~~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l 84 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQY-GVVESCEQVNT----DSETAVVNVTYSSKDQARQALDKLNGFQL---ENFTL 84 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHH-SCEEEEEEECC----SSSSEEEEEEESSHHHHHHHHHHHTTCBC---SSCBC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhc-CCeEEEEEeec----CCCCCEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 356789999999999999999888753 33334432332 56778899999999999999999999866 89999
Q ss_pred eeccCCcCC
Q 009405 448 LGSIGTPCF 456 (535)
Q Consensus 448 ~~S~g~~~~ 456 (535)
....+.+..
T Consensus 85 ~V~~a~~~~ 93 (96)
T 2e44_A 85 KVAYIPDEM 93 (96)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCccc
Confidence 988776653
No 74
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.30 E-value=1.3e-06 Score=71.22 Aligned_cols=84 Identities=17% Similarity=0.229 Sum_probs=64.0
Q ss_pred cccEEEEecCCCCCCchhHH---HHHHHHhhccceeeeccCCCC--CCCCCceeEEEeechHHHHHHHhhhccceeeeeC
Q 009405 369 HGTLVVLENLDPSYTSTVVE---DLVWHAFKENCSAKMIPRVAF--ASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 443 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVE---Dli~~afke~C~AKmI~~~~~--sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~ 443 (535)
+.+.||+.||++..+..||. +++-+ |++-..++++....+ +....|.|||.|.+.+.|+.||..|+...| +
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~-~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~---~ 89 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGK-FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV---D 89 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTT-TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE---T
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhc-cCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE---C
Confidence 45678999999999999987 55433 333445555444332 234568999999999999999999999876 9
Q ss_pred CceeeeccCCcCC
Q 009405 444 GRPLLGSIGTPCF 456 (535)
Q Consensus 444 GRPL~~S~g~~~~ 456 (535)
||+|....+.+..
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999988876654
No 75
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.29 E-value=1.5e-06 Score=65.21 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=57.8
Q ss_pred EEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeeecc
Q 009405 373 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 451 (535)
Q Consensus 373 VlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~S~ 451 (535)
|++.||++..|..||.+++.+ +++-..+++ +....+..+.|.|||.|.+.++|+.|+. |+...+ +||+|....
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~---~g~~l~v~~ 74 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQ-FGKVDDAML-MFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI---NNKMVECKK 74 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHT-TSCCSEECC-CBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS---SSCCCEEEC
T ss_pred EEEecCCCCCCHHHHHHHHHh-cCCEEEEEE-EecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE---CCEEEEEEe
Confidence 789999999999999998866 444334444 3444457788999999999999999998 887766 899987643
No 76
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=2.6e-06 Score=67.43 Aligned_cols=79 Identities=22% Similarity=0.215 Sum_probs=63.0
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHh-hccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAF-KENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~af-ke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
...+.||+.||.+..|..||.+++.+.. .+-..++++ .|.|||.|.+.+.|+.||..|+..-+ +||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 80 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---------RDYAFVHFSNREDAVEAMKALNGKVL---DGSP 80 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---------SSEEEEEESSHHHHHHHHHHHSSEEE---TTEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---------CCeEEEEeCCHHHHHHHHHHhCCCEe---CCcE
Confidence 4678999999999999999988876631 333333332 57999999999999999999999855 8999
Q ss_pred eeeccCCcCCCC
Q 009405 447 LLGSIGTPCFTG 458 (535)
Q Consensus 447 L~~S~g~~~~p~ 458 (535)
|....+.+....
T Consensus 81 l~v~~a~~~~~~ 92 (99)
T 2cpd_A 81 IEVTLAKPVDKD 92 (99)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCCCC
Confidence 998888765543
No 77
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.28 E-value=1.4e-06 Score=72.12 Aligned_cols=83 Identities=18% Similarity=0.113 Sum_probs=65.0
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
+.++.||+.||.+..|..||.+++.+ |++-..++|+.. -|.|||.|.+.+.|+.||..|+..-..+ +||||
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~-fG~v~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~-~Gr~l 83 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLP-FGKVTNILMLKG-------KNQAFLELATEEAAITMVNYYSAVTPHL-RNQPI 83 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCEE-TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceE-CCcEE
Confidence 35789999999999999999887754 455455666542 6999999999999999999987432223 89999
Q ss_pred eeccCCcCCCCC
Q 009405 448 LGSIGTPCFTGK 459 (535)
Q Consensus 448 ~~S~g~~~~p~k 459 (535)
....+.+..++.
T Consensus 84 ~V~~a~~~~~~~ 95 (101)
T 2cq1_A 84 YIQYSNHKELKT 95 (101)
T ss_dssp EEEECSCSSCCC
T ss_pred EEEEcCcccCcC
Confidence 998887666554
No 78
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.28 E-value=2.8e-06 Score=65.16 Aligned_cols=73 Identities=12% Similarity=0.103 Sum_probs=52.5
Q ss_pred ccEEEEecCCCCCC------chhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeC
Q 009405 370 GTLVVLENLDPSYT------STVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 443 (535)
Q Consensus 370 GrlVlLqNLDPs~t------S~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~ 443 (535)
++.||+.||.+..+ ..||.+++.. |++-..++|+ + -+....|.|||.|.+.+.|+.||..|+...+ +
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~i~~v~i~-~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~---~ 73 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYP-E--EDGKTKGYIFLEYASPAHAVDAVKNADGYKL---D 73 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHT-TCCEEEEECC-C--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCC---S
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh-cCCeEEEEec-C--CCCcEeEEEEEEECCHHHHHHHHHHhcCccc---C
Confidence 47899999987663 3444444432 2333344544 2 3456679999999999999999999999877 8
Q ss_pred Cc-eeee
Q 009405 444 GR-PLLG 449 (535)
Q Consensus 444 GR-PL~~ 449 (535)
|| ||..
T Consensus 74 g~~~l~V 80 (81)
T 2krb_A 74 KQHTFRV 80 (81)
T ss_dssp SSSCCCC
T ss_pred CceeEEe
Confidence 99 8864
No 79
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=3.6e-06 Score=65.58 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=63.3
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
+..+-||+.||.+..|..||.+++.+ |.+-..++++ .|.|||.|.+.+.|+.||..|+..-+ +||+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 72 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQ-YGKVLECDII---------KNYGFVHIEDKTAAEDAIRNLHHYKL---HGVNI 72 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHT-SSCEEEEEEE---------TTEEEEEESSHHHHHHHHHHHTTCBC---SSCBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHhcCCcc---CCcEE
Confidence 45688999999999999999888865 3333344444 58999999999999999999998655 89999
Q ss_pred eeccCCcCCCCC
Q 009405 448 LGSIGTPCFTGK 459 (535)
Q Consensus 448 ~~S~g~~~~p~k 459 (535)
......+..+..
T Consensus 73 ~v~~a~~~~~~~ 84 (90)
T 2dnq_A 73 NVEASKNKSKAS 84 (90)
T ss_dssp EEECSSCCCCCC
T ss_pred EEEECCCCCCCC
Confidence 988887655443
No 80
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.27 E-value=2.4e-06 Score=73.90 Aligned_cols=93 Identities=10% Similarity=0.041 Sum_probs=72.2
Q ss_pred HHHhhhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeee
Q 009405 362 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLL 441 (535)
Q Consensus 362 rl~~A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~l 441 (535)
.+.......+.|++.||++..|..||.+++.. |++-..++++... -+..+.|.|||.|.+.+.|..|+..|+...+
T Consensus 117 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~-~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~-- 192 (216)
T 2qfj_A 117 QLAEEARAFNRIYVASVHQDLSDDDIKSVFEA-FGKIKSATLARDP-TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDL-- 192 (216)
T ss_dssp HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTT-SSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTCBC--
T ss_pred hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhc-cCCeeEEEEEecC-CCCCcCceEEEEecCHHHHHHHHHHccCCEe--
Confidence 34445567889999999999999998888754 4444556655432 2456678999999999999999999999876
Q ss_pred eCCceeeeccCCcCCCCC
Q 009405 442 SNGRPLLGSIGTPCFTGK 459 (535)
Q Consensus 442 s~GRPL~~S~g~~~~p~k 459 (535)
+||+|....+.+..+..
T Consensus 193 -~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 193 -GGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp -SSSBCEEEECSSCSSTT
T ss_pred -CCcEEEEEEecCCCCCC
Confidence 99999988887664433
No 81
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.27 E-value=2.3e-06 Score=72.15 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=73.9
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
....+-||+.||++..|..||.+++...+...- .+.....+....|.|||.|.+.+.|+.|| +|+..-+ +|||
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~---~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~ 82 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND---LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV---FGNE 82 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT---CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE---TTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce---EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe---CCeE
Confidence 356789999999999999999999998775433 22233345677899999999999999999 6998766 7999
Q ss_pred eeeccCCcCCCCC----CCccccceehh
Q 009405 447 LLGSIGTPCFTGK----QSKFVGHLALD 470 (535)
Q Consensus 447 L~~S~g~~~~p~k----~s~f~GHl~i~ 470 (535)
|......+..... ..-|+|.|.-+
T Consensus 83 l~v~~~~~~~~~~~~~~~~l~v~nlp~~ 110 (175)
T 1fje_B 83 IKLEKPKGRDSKKVRAARTLLAKNLSFN 110 (175)
T ss_dssp EEEECCCCSSCSTTGGGGEEEEESCCSS
T ss_pred EEEecCCCccccccccCCEEEEeCCCCC
Confidence 9988776543322 44567766544
No 82
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.27 E-value=9.4e-07 Score=70.68 Aligned_cols=85 Identities=13% Similarity=0.148 Sum_probs=61.7
Q ss_pred HhhhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeC
Q 009405 364 RVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 443 (535)
Q Consensus 364 ~~A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~ 443 (535)
......++-||+.||.+..+..||.+++... + -..++|+.....+....|.|||.|.+.+.|+.|| .|+...+ +
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~---~ 86 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGL-N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---G 86 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSS-C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB---T
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhc-C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE---C
Confidence 3556778999999999999999998887653 3 3344444333245677899999999999999999 9998866 9
Q ss_pred CceeeeccCCc
Q 009405 444 GRPLLGSIGTP 454 (535)
Q Consensus 444 GRPL~~S~g~~ 454 (535)
||+|....+.+
T Consensus 87 g~~l~V~~a~~ 97 (100)
T 2j76_E 87 NRRIRVDVADQ 97 (100)
T ss_dssp TBCCCCEECCC
T ss_pred CeEEEEEeccC
Confidence 99998665543
No 83
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.26 E-value=1.6e-06 Score=73.88 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=69.2
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
.+.++-|+|.||.+..|..||.+++.. |++--.++++ ....+....|.|||.|.+.+.|+.||..|+..-| +||+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~-~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i---~g~~ 118 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEK-YGRVGDVYIP-RDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---DGRE 118 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGG-GSCCSEEECC-CCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS---SSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEE-ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCEE
Confidence 356789999999999999999888755 3333344443 3444567789999999999999999999998866 8999
Q ss_pred eeeccCCcCCCCC
Q 009405 447 LLGSIGTPCFTGK 459 (535)
Q Consensus 447 L~~S~g~~~~p~k 459 (535)
|......+..|..
T Consensus 119 l~V~~a~~~~~~~ 131 (135)
T 2lea_A 119 LRVQMARYGRPPD 131 (135)
T ss_dssp CEEEECCCCCCCT
T ss_pred EEEEECCCCCCCc
Confidence 9988877655543
No 84
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.26 E-value=2.7e-06 Score=76.00 Aligned_cols=84 Identities=20% Similarity=0.202 Sum_probs=69.1
Q ss_pred hhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCc
Q 009405 366 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 445 (535)
Q Consensus 366 A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GR 445 (535)
..+.++.|++.||.+..+..||.+++-. |.+-..++++... +....|.|||.|.+.+.|+.||..|+..-| +||
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~--~g~~kG~afV~F~~~~~A~~Ai~~lng~~l---~Gr 157 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDR--SGRSLGTADVHFERRADALKAMKQYKGVPL---DGR 157 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHH-TSCCSEEEECCCT--TSSCSCCEEEEESCHHHHHHHHHHSTTCBC---SSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC--CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE---CCE
Confidence 3467899999999999999999999876 5555566665444 567789999999999999999999998755 999
Q ss_pred eeeeccCCcC
Q 009405 446 PLLGSIGTPC 455 (535)
Q Consensus 446 PL~~S~g~~~ 455 (535)
||....+.+.
T Consensus 158 ~l~V~~a~~~ 167 (177)
T 2f3j_A 158 PMDIQLVASQ 167 (177)
T ss_dssp BCEEEEESSG
T ss_pred EEEEEEecCC
Confidence 9997776543
No 85
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.25 E-value=2.1e-06 Score=73.75 Aligned_cols=80 Identities=18% Similarity=0.341 Sum_probs=63.6
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhc---cceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCC
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKE---NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 444 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke---~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~G 444 (535)
+.++.||+.||++..+..|+++.++..|.. -..+.+ .. +...-|.|||.|.+.+.|+.||..|+...| +|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i-~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l---~g 99 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVV-DL---SDDNSGKAYIVFATQESAQAFVEAFQGYPF---QG 99 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE-CC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCC---TT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEe-cc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEe---CC
Confidence 447889999999999999999877776655 233333 22 345679999999999999999999999866 89
Q ss_pred ceeeeccCCc
Q 009405 445 RPLLGSIGTP 454 (535)
Q Consensus 445 RPL~~S~g~~ 454 (535)
|||....+..
T Consensus 100 r~l~V~~a~~ 109 (127)
T 2a3j_A 100 NPLVITFSET 109 (127)
T ss_dssp SCCEEEECCC
T ss_pred CEEEEEEccC
Confidence 9998776543
No 86
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=2.2e-06 Score=68.33 Aligned_cols=87 Identities=18% Similarity=0.154 Sum_probs=67.0
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
.+..+-||+.||.+..|..||.+++.+ |.+-..++++. ......+.|.|||.|.+.+.|+.||.. +...| +||+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~-~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~---~g~~ 86 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQ-YGEVVDCVIMK-DKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL---DGRN 86 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHT-TSCEEEEEEEE-CSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE---TTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEee-CCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE---CCEE
Confidence 345688999999999999999988865 44444555544 334456678999999999999999999 66544 8999
Q ss_pred eeeccCCcCCCCC
Q 009405 447 LLGSIGTPCFTGK 459 (535)
Q Consensus 447 L~~S~g~~~~p~k 459 (535)
|......+....+
T Consensus 87 l~V~~a~~~~~~~ 99 (105)
T 2dh8_A 87 IDPKPCTPRGMQP 99 (105)
T ss_dssp EBCCCSCCSSCCT
T ss_pred EEEEEccCCCCCC
Confidence 9988887665443
No 87
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.25 E-value=1.9e-06 Score=70.01 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=62.3
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++.||+.||.+..+..||.+++.. |++-...+++ +...+..+.|.|||.|.+.+.|+.||..|+...+ +||+|
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~-~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 112 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLP-FGNVISAKVF-IDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV---GTKRL 112 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTT-SCEEEEEEEC-CCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEE-eCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE---CCEEE
Confidence 45789999999999999998887754 3333344444 3344567789999999999999999999999766 89998
Q ss_pred eecc
Q 009405 448 LGSI 451 (535)
Q Consensus 448 ~~S~ 451 (535)
....
T Consensus 113 ~V~~ 116 (118)
T 2khc_A 113 KVQL 116 (118)
T ss_dssp CEEE
T ss_pred EEEe
Confidence 7543
No 88
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.25 E-value=2.3e-06 Score=69.26 Aligned_cols=83 Identities=14% Similarity=0.089 Sum_probs=65.9
Q ss_pred hhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCc
Q 009405 366 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 445 (535)
Q Consensus 366 A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GR 445 (535)
.-+.++.|++.||.+..|..||.+++.. |+.-..++++. +....|.|||.|.+.+.|+.||..|+...+ +||
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~ 75 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGK-YGPIRQIRVGN----TPETRGTAYVVYEDIFDAKNAVDHLSGFNV---SNR 75 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEC----STTTTTCEEEEESSHHHHHHHHHHHTTCBS---SSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEee----CCCCCcEEEEEECCHHHHHHHHHHcCCCEE---CCe
Confidence 3456899999999999999999988864 44444555552 233479999999999999999999999866 899
Q ss_pred eeeeccCCcCC
Q 009405 446 PLLGSIGTPCF 456 (535)
Q Consensus 446 PL~~S~g~~~~ 456 (535)
+|......+..
T Consensus 76 ~l~v~~a~~~~ 86 (115)
T 3lqv_A 76 YLVVLYYNANR 86 (115)
T ss_dssp BCEEEECCHHH
T ss_pred EEEEEEecCCh
Confidence 99987765543
No 89
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.25 E-value=2e-06 Score=67.21 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=63.1
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhcc-ceeeeeCCce
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE-GCLLLSNGRP 446 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~e-gCL~ls~GRP 446 (535)
...+-||+.||.+..|.+||.+++.+... -.....| +..|.|||.|.+.+.|+.||..|+. .-+ +||+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-vv~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~---~g~~ 74 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKL-PLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVEL---HGKI 74 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTC-CCSSCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEE---TTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCC-ceEEEEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeE---CCEE
Confidence 45678999999999999999999877443 1222222 2478999999999999999999999 544 8999
Q ss_pred eeeccCCcCCCCC
Q 009405 447 LLGSIGTPCFTGK 459 (535)
Q Consensus 447 L~~S~g~~~~p~k 459 (535)
|....+.+.....
T Consensus 75 l~v~~a~~~~~~~ 87 (93)
T 2cqh_A 75 MEVDYSVSKKLRS 87 (93)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEEccCccccC
Confidence 9988887655443
No 90
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.24 E-value=1.4e-06 Score=73.87 Aligned_cols=85 Identities=12% Similarity=0.076 Sum_probs=67.0
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
+.++.|+|.||.+..+..||.+++.. |++-..++++ ....+....|.|||.|.+.+.|+.||..|+..-| +||+|
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~-~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i---~g~~l 118 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIV-YDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---DGRRI 118 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTT-TSCEEEEEEE-CCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS---SSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEE-ecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 45788999999999999999888854 3343344544 3334466789999999999999999999999765 89999
Q ss_pred eeccCCcCCC
Q 009405 448 LGSIGTPCFT 457 (535)
Q Consensus 448 ~~S~g~~~~p 457 (535)
......+..|
T Consensus 119 ~V~~a~~~~p 128 (129)
T 2kxn_B 119 RVDFSITKRP 128 (129)
T ss_dssp EESCCSSSSC
T ss_pred EEEEecCCCC
Confidence 9877766544
No 91
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.23 E-value=2.7e-06 Score=68.68 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=62.5
Q ss_pred cccEEEEecCCCC-CCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 369 HGTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 369 ~GrlVlLqNLDPs-~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
.++-||+.||.+. .|..||.+++.+ |.+-..+++ +.|.|||.|.+.+.|+.||..|+..-| +||+|
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~-~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 92 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSK-YGRVAGCSV---------HKGYAFVQYSNERHARAAVLGENGRVL---AGQTL 92 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGG-GSCCSEEEE---------ETTEEEEECSSSHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEE---CCeEE
Confidence 4689999999999 999998888765 444444444 479999999999999999999999766 89999
Q ss_pred eeccCCcCCCC
Q 009405 448 LGSIGTPCFTG 458 (535)
Q Consensus 448 ~~S~g~~~~p~ 458 (535)
....+.+..+.
T Consensus 93 ~V~~a~~~~~~ 103 (110)
T 1wf1_A 93 DINMAGEPKPD 103 (110)
T ss_dssp CEEESCCCCSC
T ss_pred EEEECCCCCCC
Confidence 98887654443
No 92
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.23 E-value=1.5e-06 Score=71.55 Aligned_cols=78 Identities=26% Similarity=0.254 Sum_probs=62.1
Q ss_pred cEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeeec
Q 009405 371 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 450 (535)
Q Consensus 371 rlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~S 450 (535)
+=||+.||+++.|..||.+++.+ |++--.++++... +..-|.|||.|.+.+.|+.||..|+...| +||+|...
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~-~G~v~~v~i~~d~---~~~kg~afV~f~~~~~A~~Ai~~l~~~~~---~g~~i~V~ 78 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNGMLL---NDRKVFVG 78 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEET---TEEEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred CEEEECCCCCCCCHHHHHHHHhc-cCCEEEEEEeecC---CCCCceEEEEECCHHHHHHHHHHcCCCEE---CCEEEEEE
Confidence 45999999999999999998865 4444455665432 22358999999999999999999999866 99999987
Q ss_pred cCCcC
Q 009405 451 IGTPC 455 (535)
Q Consensus 451 ~g~~~ 455 (535)
...+.
T Consensus 79 ~a~~~ 83 (115)
T 4f25_A 79 RFKSR 83 (115)
T ss_dssp ESSCC
T ss_pred ECCCc
Confidence 76543
No 93
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.23 E-value=2e-06 Score=73.38 Aligned_cols=90 Identities=16% Similarity=0.067 Sum_probs=69.9
Q ss_pred hhhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCC
Q 009405 365 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 444 (535)
Q Consensus 365 ~A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~G 444 (535)
.+.+..+.|+|.||.+..|..||.+++-. |.+-..++++. ...+....|.|||.|.+.+.|+.||..|+...| +|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~-~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g 108 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSK-SGDIKKIIMGL-DKMKKTACGFCFVEYYSRADAENAMRYINGTRL---DD 108 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE---TT
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEe-cCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CC
Confidence 45567899999999999999998888754 33333444443 333355668999999999999999999998876 99
Q ss_pred ceeeeccCCcCCCCC
Q 009405 445 RPLLGSIGTPCFTGK 459 (535)
Q Consensus 445 RPL~~S~g~~~~p~k 459 (535)
|+|......+..+.+
T Consensus 109 ~~l~V~~a~~~~~~~ 123 (156)
T 1h2v_Z 109 RIIRTDWDAGFKEGR 123 (156)
T ss_dssp EECEEEEESCCCTTC
T ss_pred eEEEEEECCCCCCcC
Confidence 999988887765544
No 94
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.23 E-value=2.4e-06 Score=70.19 Aligned_cols=74 Identities=14% Similarity=0.043 Sum_probs=60.8
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
.++.||+.||.+..|..||.+++.+ |+.-..++|++ .-|.|||.|.+.+.|+.||..|+..-+ +||||.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~-------~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~ 77 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSR-FGSLGRVLLPE-------GGITAIVEFLEPLEARKAFRHLAYSKF---HHVPLY 77 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCS-------SSSCEEEEESCHHHHHHHHHHHTTCBS---SSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeC-------CCCEEEEEeCCHHHHHHHHHHhCCCEE---CCeEEE
Confidence 4689999999999999999998875 44444455542 457899999999999999999998866 899998
Q ss_pred eccCC
Q 009405 449 GSIGT 453 (535)
Q Consensus 449 ~S~g~ 453 (535)
...+.
T Consensus 78 V~~a~ 82 (111)
T 1whx_A 78 LEWAP 82 (111)
T ss_dssp EEEEE
T ss_pred EEECC
Confidence 76653
No 95
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.22 E-value=2.2e-06 Score=70.48 Aligned_cols=81 Identities=17% Similarity=0.232 Sum_probs=64.1
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++.|++.||++..|..||.+++.. |+.-..++++.. .......|.|||-|.+.+.|+.|+..|+...+ +||||
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~i 159 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWD-MQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL---NGRPL 159 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTT-STTEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhc-cCCeeEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc---CCcEE
Confidence 35678999999999999999888844 444445555433 23456678999999999999999999999876 99999
Q ss_pred eeccCC
Q 009405 448 LGSIGT 453 (535)
Q Consensus 448 ~~S~g~ 453 (535)
..+.+.
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 877653
No 96
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.22 E-value=1.5e-06 Score=67.99 Aligned_cols=81 Identities=12% Similarity=0.132 Sum_probs=63.3
Q ss_pred hhhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCC
Q 009405 365 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 444 (535)
Q Consensus 365 ~A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~G 444 (535)
.....++-||+.||.+..|..||.+++.. --..+.+ .......|.|||.|.+.+.|+.||..|+..-| +|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~----~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g 80 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFED----ALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---DG 80 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCS----EEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE---TT
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhh----CCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CC
Confidence 34457899999999999999988776654 2233444 34456678999999999999999999998755 99
Q ss_pred ceeeeccCCcC
Q 009405 445 RPLLGSIGTPC 455 (535)
Q Consensus 445 RPL~~S~g~~~ 455 (535)
|+|......+.
T Consensus 81 ~~l~v~~a~~~ 91 (96)
T 1fjc_A 81 RSVSLYYTGEK 91 (96)
T ss_dssp EEEEEEECSSS
T ss_pred eEEEEEEcCCC
Confidence 99997766544
No 97
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.22 E-value=4.5e-06 Score=67.79 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=65.2
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
....+-||+.||.+..|..||.+++.+ |.+-..++++ ....+..+.|.|||.|.+.+.|+.||..|+. - + +||+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~--~-~g~~ 87 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEG-FGDIEEAVVI-TDRQTGKSRGYGFVTMADRAAAERACKDPNP-I--I-DGRK 87 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHT-TSCEEEEEES-CCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-E--E-TTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeeEEEEE-EcCCCCccceEEEEEECCHHHHHHHHHhCCC-c--C-CCEE
Confidence 345789999999999999999888864 4443344444 4444577889999999999999999999995 3 3 8999
Q ss_pred eeeccCCcC
Q 009405 447 LLGSIGTPC 455 (535)
Q Consensus 447 L~~S~g~~~ 455 (535)
|......+.
T Consensus 88 l~V~~a~~~ 96 (116)
T 2cqd_A 88 ANVNLAYLG 96 (116)
T ss_dssp CEEEESTTT
T ss_pred EEEEEcccC
Confidence 998887543
No 98
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.22 E-value=2.8e-06 Score=70.46 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=64.2
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
-.+.||+.||.+..+..||.+++-+ |++-..++|++ .-|.|||.|.+.+.|+.||..|+..-+.+ +||||.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~-fG~V~~v~i~~-------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i-~Gr~l~ 84 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEK-FGTICYVMMMP-------FKRQALVEFENIDSAKECVTFAADVPVYI-AGQQAF 84 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTT-TSCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHHHSCCBS-SSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEC-------CCCEEEEEECCHHHHHHHHHHhccCCceE-CCEEEE
Confidence 3689999999999999999888765 45555566664 25899999999999999999997643333 899999
Q ss_pred eccCCcCCCC
Q 009405 449 GSIGTPCFTG 458 (535)
Q Consensus 449 ~S~g~~~~p~ 458 (535)
...+......
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 8887665443
No 99
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.22 E-value=8.9e-07 Score=72.50 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=68.1
Q ss_pred HHHhhhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeee
Q 009405 362 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLL 441 (535)
Q Consensus 362 rl~~A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~l 441 (535)
.+..+....+-|++.||.+..|..||.+++.. |+.-..++++. ...+....|.|||.|.+.+.|+.||..|+...+
T Consensus 18 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~-~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i-- 93 (108)
T 2jrs_A 18 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMM-DSETGRSKGYGFITFSDSECAKKALEQLNGFEL-- 93 (108)
T ss_dssp SSCCSCSSCEEEEEECCCSSCCHHHHHHHHTT-TSCEEEEEEEE-ETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS--
T ss_pred ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEE-cCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--
Confidence 34555667899999999999999999888754 33434445443 333455678999999999999999999999766
Q ss_pred eCCceeeeccCCc
Q 009405 442 SNGRPLLGSIGTP 454 (535)
Q Consensus 442 s~GRPL~~S~g~~ 454 (535)
+||+|..+.+.+
T Consensus 94 -~g~~l~V~~a~~ 105 (108)
T 2jrs_A 94 -AGRPMKVGHVTE 105 (108)
T ss_dssp -SSSCCEEECSCS
T ss_pred -CCEEEEEEEccc
Confidence 899999877654
No 100
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.21 E-value=2.6e-06 Score=69.88 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=63.3
Q ss_pred HhhhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeC
Q 009405 364 RVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 443 (535)
Q Consensus 364 ~~A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~ 443 (535)
......++.||+.||.+..|..||.+++.+ |++--.++++ .|.|||.|.+.+.|+.|+..|+..-+ +
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~---------kg~afV~f~~~~~A~~Ai~~l~g~~~---~ 91 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGP-FGPMKEVKIL---------NGFAFVEFEEAESAAKAIEEVHGKSF---A 91 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTT-TSCCCEEEEE---------TTEEEEECSSHHHHHHHHHHHTTCEE---T
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHcCCCEE---C
Confidence 345567899999999999999998888755 3343445554 69999999999999999999999866 9
Q ss_pred CceeeeccCCcC
Q 009405 444 GRPLLGSIGTPC 455 (535)
Q Consensus 444 GRPL~~S~g~~~ 455 (535)
||+|....+.+.
T Consensus 92 g~~l~V~~a~~~ 103 (108)
T 2jvo_A 92 NQPLEVVYSKLP 103 (108)
T ss_dssp TEECEEESCSCC
T ss_pred CeEEEEEEecCC
Confidence 999998877654
No 101
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.21 E-value=5e-06 Score=65.81 Aligned_cols=76 Identities=18% Similarity=0.062 Sum_probs=61.8
Q ss_pred cEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeeec
Q 009405 371 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 450 (535)
Q Consensus 371 rlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~S 450 (535)
+-|++.||.+..|..||.+++... ++--.++++.. ..|.|||.|.+.+.|+.||..|+..-+ +||+|...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V~ 70 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY-GPLRTVWIARN------PPGFAFVEFEDPRDAEDAVRGLDGKVI---CGSRVRVE 70 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH-CCCSEEEEESS------SSSEEEEECSSHHHHHHHHHHHHHSCS---SSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeC------CCCEEEEEECCHHHHHHHHHHHCCCeE---CCcEEEEE
Confidence 358999999999999999988764 34344555543 679999999999999999999998855 89999988
Q ss_pred cCCcCC
Q 009405 451 IGTPCF 456 (535)
Q Consensus 451 ~g~~~~ 456 (535)
.+.+..
T Consensus 71 ~a~~~~ 76 (101)
T 2hvz_A 71 LSTGMP 76 (101)
T ss_dssp ESSSCC
T ss_pred EccCCC
Confidence 776544
No 102
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.21 E-value=2.1e-06 Score=73.96 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=67.5
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhcc-ceeeeeCCcee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE-GCLLLSNGRPL 447 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~e-gCL~ls~GRPL 447 (535)
.++.||+.||.+..|..||++++-. |++-..++|+.. -|.|||.|.+.++|+.||..|+. +.. + +||||
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~-fG~V~~v~i~~~-------kG~AFVeF~~~e~A~~Ai~~l~~~~~~-l-~Gr~l 99 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPV-L-RGQPI 99 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTT-TSCCCEEEEEGG-------GTEEEEECSCHHHHHHHHHHHHHHCCC-B-TTBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhccCCce-E-CCeEE
Confidence 4789999999999999999988754 666667777752 59999999999999999999985 322 2 89999
Q ss_pred eeccCCcCCCCCC
Q 009405 448 LGSIGTPCFTGKQ 460 (535)
Q Consensus 448 ~~S~g~~~~p~k~ 460 (535)
....+.+..++..
T Consensus 100 ~V~~a~~k~~~~~ 112 (119)
T 2ad9_A 100 YIQFSNHKELKTD 112 (119)
T ss_dssp EEEECSSSSCCCC
T ss_pred EEEEccCCCCCcc
Confidence 9998887766653
No 103
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.20 E-value=4.8e-06 Score=70.59 Aligned_cols=78 Identities=19% Similarity=0.086 Sum_probs=64.7
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
....+-||+.||.+..|..||.+++.+ |++-..++++.. ..|.|||.|.+.+.|+.||..|+..-| +|||
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 139 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGY-YGPLRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGRTL---CGCR 139 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHH-HSCEEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSSCS---SSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-hCCEEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCCEE---CCeE
Confidence 346789999999999999999999876 455556666543 479999999999999999999999755 8999
Q ss_pred eeeccCCc
Q 009405 447 LLGSIGTP 454 (535)
Q Consensus 447 L~~S~g~~ 454 (535)
|..+.+.+
T Consensus 140 l~v~~a~~ 147 (150)
T 2i2y_A 140 VRVELSNG 147 (150)
T ss_dssp CEEEECCC
T ss_pred EEEEEcCC
Confidence 99877654
No 104
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.20 E-value=4.4e-06 Score=69.61 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=67.6
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
+..+-|++.||.+..|..||.+++.. |++-..++++. ...+..+.|.|||.|.+.+.|+.||..|+..-| +||+|
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~-~G~i~~v~i~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 114 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFER-YGPIESVKIVC-DRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI---LNKRL 114 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHH-HSCEEEEEEEE-ETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC---SSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEE-cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence 45789999999999999999988866 34434444443 222355678999999999999999999998765 89999
Q ss_pred eeccCCcCCCCC
Q 009405 448 LGSIGTPCFTGK 459 (535)
Q Consensus 448 ~~S~g~~~~p~k 459 (535)
....+.+....+
T Consensus 115 ~v~~a~~~~~~~ 126 (139)
T 1u6f_A 115 KVALAASGHQRP 126 (139)
T ss_dssp EEEESSCCCCCC
T ss_pred EEEECCCCCCCC
Confidence 988876654443
No 105
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.19 E-value=2.3e-06 Score=65.41 Aligned_cols=73 Identities=23% Similarity=0.269 Sum_probs=57.8
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhh-ccceeeeeCCce
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKL-EEGCLLLSNGRP 446 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL-~egCL~ls~GRP 446 (535)
...+.|++.||++..+..||.+++.+ |+.-...+++. .-|.|||.|.+.+.|+.|+..| +...+ +|||
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~-~G~i~~~~~~~-------~kg~afV~f~~~~~A~~a~~~l~~~~~~---~g~~ 78 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQ-FGEIRTITVVQ-------RQQCAFIQFATRQAAEVAAEKSFNKLIV---NGRR 78 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHT-TSCEEEEEEEG-------GGTEEEEEESSHHHHHHHHHTTTTTCEE---TTEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHh-CCCEeEEEEEC-------CCCEEEEEECCHHHHHHHHHHhcCCeeE---CCCE
Confidence 45688999999999999999988865 34444555554 3689999999999999999999 55433 8999
Q ss_pred eeecc
Q 009405 447 LLGSI 451 (535)
Q Consensus 447 L~~S~ 451 (535)
|....
T Consensus 79 l~v~~ 83 (85)
T 2ytc_A 79 LNVKW 83 (85)
T ss_dssp CCEEE
T ss_pred EEEEe
Confidence 87554
No 106
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.18 E-value=3e-06 Score=74.48 Aligned_cols=81 Identities=12% Similarity=0.070 Sum_probs=64.8
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhh--ccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCc
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFK--ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 445 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afk--e~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GR 445 (535)
+..+-||+.||.+..|..||.+++.. |+ +-..++++.. ..+...-|.|||.|.+.+.|+.||..|+..-| +||
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d-~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~---~Gr 127 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRS-IGVYDVVELKFAEN-RANGQSKGYAEVVVASENSVHKLLELLPGKVL---NGE 127 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE---TTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-HCCccEEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCe
Confidence 45789999999999999999999855 55 6667776643 23355678999999999999999999999866 999
Q ss_pred eeeeccCC
Q 009405 446 PLLGSIGT 453 (535)
Q Consensus 446 PL~~S~g~ 453 (535)
+|....+.
T Consensus 128 ~l~V~~a~ 135 (156)
T 3n9u_C 128 KVDVRPAT 135 (156)
T ss_dssp ECEEEECC
T ss_pred EeEEEEcC
Confidence 99977654
No 107
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.18 E-value=2.6e-06 Score=73.88 Aligned_cols=87 Identities=9% Similarity=0.040 Sum_probs=66.7
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++.|||.||.+..|..+|.+++.+ |++-..++++.. ..+..+.|.|||.|.+.+.|+.||..|+...| +||||
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l 144 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLD-RRTGFSKGYALVEYETHKQALAAKEALNGAEI---MGQTI 144 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC-TTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhc-CCCEEEEEEEec-CCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 45789999999999999999988865 344455555433 23355679999999999999999999999766 89999
Q ss_pred eeccCCcCCCCC
Q 009405 448 LGSIGTPCFTGK 459 (535)
Q Consensus 448 ~~S~g~~~~p~k 459 (535)
....+.+..|.+
T Consensus 145 ~V~~a~~~~~~~ 156 (165)
T 1rk8_A 145 QVDWCFVKGPKR 156 (165)
T ss_dssp EEEESEECC---
T ss_pred EEEEecCCCCCC
Confidence 988877665544
No 108
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.17 E-value=3.8e-06 Score=66.51 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=62.8
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
....+-|++.||.+..|..||.+++.+ |.+-...+++. .-|.|||.|.+.+.|+.||..|+..-| +||+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~~-------~kg~afV~f~~~~~a~~a~~~l~g~~~---~g~~ 80 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEK-YGKAGEVFIHK-------DKGFGFIRLETRTLAEIAKVELDNMPL---RGKQ 80 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTST-TCCCSEEEEET-------TTTEEEEECSSSHHHHHHHHHHTTCCB---TTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhh-cCCeEEEEEec-------CCCEEEEEECCHHHHHHHHHHhCCCEe---CCce
Confidence 346688999999999999998887754 33334445542 369999999999999999999998865 8999
Q ss_pred eeeccCCcCC
Q 009405 447 LLGSIGTPCF 456 (535)
Q Consensus 447 L~~S~g~~~~ 456 (535)
|....+.+..
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpj_A 81 LRVRFACHSA 90 (99)
T ss_dssp CEEEESSCCS
T ss_pred EEEEEcCCCC
Confidence 9988776543
No 109
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.17 E-value=5.2e-06 Score=68.47 Aligned_cols=78 Identities=19% Similarity=0.208 Sum_probs=61.8
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++.|++.||.+..|..||.+++.. |++--..+ |++...+..+.|.|||.|.+.+.|+.||..|+..-| +||+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~-i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 135 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQ-IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTI 135 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGG-GSCEEEEE-CCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE---TTEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHh-cCCEEEEE-EeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 35799999999999999999888755 33333344 344445567789999999999999999999998755 89998
Q ss_pred eec
Q 009405 448 LGS 450 (535)
Q Consensus 448 ~~S 450 (535)
.-.
T Consensus 136 ~v~ 138 (140)
T 2ku7_A 136 RVN 138 (140)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 110
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.17 E-value=2.1e-06 Score=67.40 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=61.6
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+.|++.||.+..+..||++++... ..-..++++.. ..+....|.|||.|.+.+.|+.||..|+...| +||+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-G~v~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l 87 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGY-QVIPGSVCLKY-NEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---GSRKV 87 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTS-CCCTTTCEEEE-CSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc-CCccceEEEEE-CCCCCeeeEEEEEECCHHHHHHHHHHhCCCee---CCeEE
Confidence 456889999999999999998887542 22222333322 23345568999999999999999999999866 99999
Q ss_pred eeccCC
Q 009405 448 LGSIGT 453 (535)
Q Consensus 448 ~~S~g~ 453 (535)
....+.
T Consensus 88 ~V~~a~ 93 (98)
T 2cqp_A 88 KLVLGS 93 (98)
T ss_dssp EEEESS
T ss_pred EEEEcC
Confidence 877654
No 111
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.17 E-value=1.2e-06 Score=70.89 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=63.8
Q ss_pred hhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCc
Q 009405 366 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 445 (535)
Q Consensus 366 A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GR 445 (535)
.....+-||+.||.+..|..||.+++.. |++-..++++. ...+....|.|||.|.+.+.|+.|| .|+..-| +||
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~-~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~ 94 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSA-VGKVRDVRIIS-DRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL---LGV 94 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECC-SCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE---TTE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEeEEEEEe-cCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe---CCe
Confidence 4456789999999999999998888754 34434455543 3334567799999999999999999 9998765 899
Q ss_pred eeeeccCCc
Q 009405 446 PLLGSIGTP 454 (535)
Q Consensus 446 PL~~S~g~~ 454 (535)
+|......+
T Consensus 95 ~l~V~~a~~ 103 (114)
T 2cq4_A 95 PIIVQASQA 103 (114)
T ss_dssp EEEEEEHHH
T ss_pred EEEEEecCC
Confidence 998765433
No 112
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.17 E-value=3.5e-06 Score=66.71 Aligned_cols=79 Identities=14% Similarity=0.142 Sum_probs=61.2
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccce--------eeeccCCCCCCCCCceeEEEeechHHHHHHHhhhcccee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCS--------AKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 439 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~--------AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL 439 (535)
...+.||+.||.+..|..||.+++... +.-.. ++++. ..-+....|.|||.|.+.+.|+.||..|+..-+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~v~i~~-~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQI-GIIKTNKKTGQPMINLYT-DRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTT-SCBCEETTTTEESEEEEE-CTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh-CCEeeccccccccEEEEe-cCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 356889999999999999999888653 33333 44443 223355678999999999999999999999866
Q ss_pred eeeCCceeeecc
Q 009405 440 LLSNGRPLLGSI 451 (535)
Q Consensus 440 ~ls~GRPL~~S~ 451 (535)
+||+|....
T Consensus 89 ---~g~~l~V~~ 97 (99)
T 2la6_A 89 ---SGNPIKVSF 97 (99)
T ss_dssp ---SSSBCEEEE
T ss_pred ---CCcEEEEEe
Confidence 899987654
No 113
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.16 E-value=4.7e-06 Score=69.12 Aligned_cols=107 Identities=13% Similarity=0.126 Sum_probs=77.1
Q ss_pred ccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeee
Q 009405 370 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 449 (535)
Q Consensus 370 GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~ 449 (535)
++-|++.||.+..+..||.+++.. ++.-...+++. ..-+..+.|.|||.|.+.+.|+.|+..|+..-+ +||||..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~-~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~~l~v 77 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRA-IGPINTCRIMR-DYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV---RNKRLKV 77 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCE-ETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEE-eCCCCccceEEEEEECCHHHHHHHHHhcCCCEe---CCcEEEE
Confidence 578999999999999999988866 33333444443 223455678999999999999999999998755 9999998
Q ss_pred ccCCcCCCCC--CCccccceehhhHHHHHHHHHHhhhc
Q 009405 450 SIGTPCFTGK--QSKFVGHLALDKLKFQMQREMREAVS 485 (535)
Q Consensus 450 S~g~~~~p~k--~s~f~GHl~i~k~r~q~qrEmr~AVS 485 (535)
....+..+.. ..-|.|.|.-+- ..+++++..+
T Consensus 78 ~~~~~~~~~~~~~~l~v~nl~~~~----t~~~l~~~f~ 111 (168)
T 1b7f_A 78 SYARPGGESIKDTNLYVTNLPRTI----TDDQLDTIFG 111 (168)
T ss_dssp EECCCCSSTTTTCEEEEESCCTTC----CHHHHHHHHT
T ss_pred EecCCCcccCCCCCEEEeCCCCCC----CHHHHHHhhh
Confidence 8776655433 445677666443 2345555543
No 114
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=4.9e-06 Score=67.85 Aligned_cols=91 Identities=15% Similarity=0.202 Sum_probs=65.7
Q ss_pred CChHHHHHh-hhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhc
Q 009405 357 LPWEERIRV-AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLE 435 (535)
Q Consensus 357 lPWeerl~~-A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~ 435 (535)
.|+..++.. ....++-|++.||.+..|..||.+++.. |++-..++++... ....|.|||.|.+.+.|+.|+..|+
T Consensus 15 ~~~~~S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~---~~~kg~afV~f~~~~~A~~Ai~~l~ 90 (109)
T 2err_A 15 VPRGSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNE---RGSKGFGFVTFENSADADRAREKLH 90 (109)
T ss_dssp -------CCSCTTCCCEEEEESCCTTCCHHHHHHHGGG-TCCCSCEEECCBT---TBCTTEEEEECCCSHHHHHHHHHHT
T ss_pred CCCCCCCCccCCCCCCEEEEECCCCcCCHHHHHHHHHh-cCCEEEEEEEECC---CCCceEEEEEECCHHHHHHHHHHcC
Confidence 344444443 3456799999999999999998887754 3444455555432 2367999999999999999999999
Q ss_pred cceeeeeCCceeeeccCCc
Q 009405 436 EGCLLLSNGRPLLGSIGTP 454 (535)
Q Consensus 436 egCL~ls~GRPL~~S~g~~ 454 (535)
..-+ +||+|....+.+
T Consensus 91 g~~~---~g~~l~V~~a~~ 106 (109)
T 2err_A 91 GTVV---EGRKIEVNNATA 106 (109)
T ss_dssp TCEE---TTEECEEEECCC
T ss_pred CCEE---CCEEEEEEECCC
Confidence 9866 999999877654
No 115
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=1.6e-06 Score=66.56 Aligned_cols=79 Identities=20% Similarity=0.172 Sum_probs=61.3
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++-|++.||.+..+..||.+++.. |++-..++++ ....+..+.|.|||.|.+.+.|+.||..|+..-| +||+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~~ 77 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQP-YGKIVSTKAI-LDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV---QAQMA 77 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTT-TSCEEEEEEE-CCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC---CEESC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEE-ecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE---eeEEE
Confidence 46789999999999999998877653 3333344444 3444577789999999999999999999998855 78888
Q ss_pred eecc
Q 009405 448 LGSI 451 (535)
Q Consensus 448 ~~S~ 451 (535)
-.+.
T Consensus 78 ~~~~ 81 (85)
T 1x4e_A 78 KQSG 81 (85)
T ss_dssp CSSC
T ss_pred eecC
Confidence 6543
No 116
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.15 E-value=2.4e-06 Score=64.02 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=56.8
Q ss_pred EEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeeecc
Q 009405 372 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 451 (535)
Q Consensus 372 lVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~S~ 451 (535)
-|++.||.+..+..||.+++.+ +++--.+++ ++...+..+.|.|||.|.+.+.|+.|+..++ .-+ +||+|....
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~-~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~---~g~~l~v~~ 75 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQ-FGEVKECLV-MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL---DSKTIDPKV 75 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTT-TSCCCCEEE-ECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC---SSCCCEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEE-ecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc---CCEEEEEEe
Confidence 4799999999999999888765 233233444 3444456778999999999999999999999 433 999987654
No 117
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.14 E-value=6.7e-06 Score=64.86 Aligned_cols=77 Identities=12% Similarity=0.086 Sum_probs=60.5
Q ss_pred ccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeC--Ccee
Q 009405 370 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN--GRPL 447 (535)
Q Consensus 370 GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~--GRPL 447 (535)
.+.||+.||.+..|..||.+++.. |.+--.++++. ..|.|||.|.+.+.|+.||..|+..-+ + ||+|
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~---~~~g~~l 85 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDR-FGSIRTIDHVK-------GDSFAYIQYESLDAAQAACAKMRGFPL---GGPDRRL 85 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHT-TSCEEEEEECS-------SSCCEEEEESSHHHHHHHHHHHTTCBC---SSSSCBC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEeC-------CCCEEEEEECCHHHHHHHHHHHCCCEe---CCCCcEE
Confidence 478999999999999999887764 33333344442 268999999999999999999998755 5 9999
Q ss_pred eeccCCcCCC
Q 009405 448 LGSIGTPCFT 457 (535)
Q Consensus 448 ~~S~g~~~~p 457 (535)
....+.+..+
T Consensus 86 ~V~~a~~~~~ 95 (97)
T 1why_A 86 RVDFAKSGPS 95 (97)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCCC
Confidence 9887766543
No 118
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.14 E-value=6.7e-06 Score=69.32 Aligned_cols=76 Identities=13% Similarity=0.179 Sum_probs=62.5
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
.++.|++.||.++.|..||.+++. .-.+.+.+ .......|.|||-|.+.+.|+.|+..|+...+ +||+|.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~----~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~i~ 167 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFE----DALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---DGRSVS 167 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCT----TCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE---TTEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHH----hcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE---CCeEEE
Confidence 578999999999999887766554 44456666 44567789999999999999999999999766 899999
Q ss_pred eccCCc
Q 009405 449 GSIGTP 454 (535)
Q Consensus 449 ~S~g~~ 454 (535)
.+.+.|
T Consensus 168 v~~a~~ 173 (175)
T 1fje_B 168 LYYTGE 173 (175)
T ss_dssp EEECSS
T ss_pred EEecCC
Confidence 887755
No 119
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.13 E-value=5.7e-06 Score=68.13 Aligned_cols=107 Identities=20% Similarity=0.225 Sum_probs=77.1
Q ss_pred ccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeee
Q 009405 370 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 449 (535)
Q Consensus 370 GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~ 449 (535)
.|-|++.||.|..|..||.+++.. +++-...+++.. ..+..+.|.|||.|.+.+.|+.|+..|+..-+ +||||..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~~~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~~l~v 76 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGS-IGEIESCKLVRD-KITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKV 76 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEeC-CCCCcceeEEEEEECCHHHHHHHHHHcCCCcc---CCceEEE
Confidence 367999999999999999988875 334444555543 33456679999999999999999999998655 8999998
Q ss_pred ccCCcCCCC--CCCccccceehhhHHHHHHHHHHhhhc
Q 009405 450 SIGTPCFTG--KQSKFVGHLALDKLKFQMQREMREAVS 485 (535)
Q Consensus 450 S~g~~~~p~--k~s~f~GHl~i~k~r~q~qrEmr~AVS 485 (535)
....+..+. ...-|.|.|.-+- ..+++++..+
T Consensus 77 ~~~~~~~~~~~~~~l~v~nl~~~~----t~~~l~~~f~ 110 (167)
T 1fxl_A 77 SYARPSSASIRDANLYVSGLPKTM----TQKELEQLFS 110 (167)
T ss_dssp EECCCCCGGGTTCEEEEESCCTTC----CHHHHHHHHG
T ss_pred EecCCCcccCCCCcEEECCCCCcC----CHHHHHHHHH
Confidence 877655432 3446777765443 2244555443
No 120
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.13 E-value=4e-06 Score=64.53 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=59.9
Q ss_pred hhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCc
Q 009405 366 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 445 (535)
Q Consensus 366 A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GR 445 (535)
.....+-|++.||.+..|..+|.+++.+ |++-..++++. ...+....|.|||.|.+.+.|+.||.. +..- + +||
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~-~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~--~-~g~ 80 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTK-FGEVVDCTIKM-DPNTGRSRGFGFILFKDAASVEKVLDQ-KEHR--L-DGR 80 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTT-TSCEEEEEEEE-CTTTCCEEEEEEEEESSTHHHHHHHHS-SCEE--E-TTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEee-cCCCCccccEEEEEECCHHHHHHHHHh-CCCE--E-CCE
Confidence 3467889999999999999999988854 44444555543 333466678999999999999999965 4442 3 999
Q ss_pred eeeec
Q 009405 446 PLLGS 450 (535)
Q Consensus 446 PL~~S 450 (535)
+|...
T Consensus 81 ~i~v~ 85 (87)
T 3s7r_A 81 VIDPK 85 (87)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98754
No 121
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.12 E-value=1.1e-05 Score=67.46 Aligned_cols=98 Identities=10% Similarity=0.079 Sum_probs=70.2
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhc-ccee----eeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSA----KMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS 442 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke-~C~A----KmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls 442 (535)
++.+-|++.||.++.|..||.+++...+.. .|.. .+... . .....|.|||.|.+.+.|+.|+ .|+..-+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~-~-~~~~~g~afV~f~~~~~A~~A~-~~~~~~~--- 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAV-Q-INQDKNFAFLEFRSVDETTQAM-AFDGIIF--- 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEE-E-EETTTTEEEEEESSHHHHHHHG-GGTTCEE---
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeee-E-ecCCCCEEEEEeCCHHHHHHHH-HhCCcEe---
Confidence 567899999999999999999999886422 1110 11111 1 1244799999999999999999 8988754
Q ss_pred CCceeeeccCCcCCCC--CCCccccceehhh
Q 009405 443 NGRPLLGSIGTPCFTG--KQSKFVGHLALDK 471 (535)
Q Consensus 443 ~GRPL~~S~g~~~~p~--k~s~f~GHl~i~k 471 (535)
+||||.........+. ...-|.|.|.-+-
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~ 106 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPLPGAHKLFIGGLPNYL 106 (172)
T ss_dssp TTEECEEECCSSCCCCTTTTCEEEECCCTTC
T ss_pred cCceeeecCCcccCCCCCCCEEEEEcCCCcC
Confidence 9999998776554333 3556777776543
No 122
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.12 E-value=6.6e-06 Score=67.66 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=74.8
Q ss_pred cEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeeec
Q 009405 371 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 450 (535)
Q Consensus 371 rlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~S 450 (535)
|-||+.||.++.|..||.+++.. +++--..+++... .+...|.|||.|.+.+.|+.|+..|+...+ +||||...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~i~v~ 74 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQV-GGPIANIKIMIDK--NNKNVNYAFVEYHQSHDANIALQTLNGKQI---ENNIVKIN 74 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGG-GSCEEEEEEECCC--C-CCEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHh-cCCeEEEEEEECC--CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc---CCCeeEEE
Confidence 57999999999999999988865 3444455555443 255779999999999999999999999877 89999887
Q ss_pred cCCcCCCCC----CCccccceehhhHHHHHHHHHHhhh
Q 009405 451 IGTPCFTGK----QSKFVGHLALDKLKFQMQREMREAV 484 (535)
Q Consensus 451 ~g~~~~p~k----~s~f~GHl~i~k~r~q~qrEmr~AV 484 (535)
...+..+.. ..-|.|.|.-+- ..+++++..
T Consensus 75 ~~~~~~~~~~~~~~~l~v~nl~~~~----t~~~l~~~f 108 (166)
T 3md3_A 75 WAFQSQQSSSDDTFNLFVGDLNVNV----DDETLRNAF 108 (166)
T ss_dssp ECCCCCCCCCTTCEEEEEESCCTTC----CHHHHHHHH
T ss_pred EcCCCCCCCCCCCceEEECCCCCCC----CHHHHHHHH
Confidence 765543322 335666665433 224555554
No 123
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.11 E-value=3.2e-06 Score=65.84 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=58.9
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
..+.|++.||.+..|..||.+++.+. ..-...+++.. .......|.|||.|.+.+.|+.||..|+..-+ +||+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~gr~l~ 88 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGY-QVIPGSVCLKY-NEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---GSRKVK 88 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTS-CBCTTCCEEEE-CTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCccceEEEEe-CCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE---CCcEEE
Confidence 35789999999999999998877542 22222333332 22345568999999999999999999999866 899998
Q ss_pred eccC
Q 009405 449 GSIG 452 (535)
Q Consensus 449 ~S~g 452 (535)
-...
T Consensus 89 v~~a 92 (95)
T 2ek1_A 89 LSGP 92 (95)
T ss_dssp EECC
T ss_pred EEec
Confidence 6543
No 124
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.11 E-value=2.8e-06 Score=66.31 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=57.9
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
..+-|++.||.+..+..||.+++.+. +-..+++. ...|.|||.|.+.+.|+.||..|+..-+ +||+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~--~v~~~~i~-------~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~ 71 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY--DLKYCYVD-------RNKRTAFVTLLNGEQAQNAIQMFHQYSF---RGKDLI 71 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS--CCCCEEEE-------GGGTEEEECCSCHHHHHHHHHHHTTEEE---TTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC--CeEEEEEe-------CCCcEEEEEECCHHHHHHHHHHhCCCeE---CCcEEE
Confidence 35779999999999999888776554 33334442 5679999999999999999999998866 999998
Q ss_pred eccC
Q 009405 449 GSIG 452 (535)
Q Consensus 449 ~S~g 452 (535)
...+
T Consensus 72 V~~a 75 (88)
T 1wg1_A 72 VQLQ 75 (88)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7654
No 125
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.10 E-value=1.3e-05 Score=63.33 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=62.2
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
.++-||+.|| ..|..||.+++.. |.+-..++|. .+.|.|||.|.+.+.|+.||..|+...+ +||+|.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~-~G~i~~v~i~-------~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~ 80 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD-------PPRNCAFVTYEKMESADQAVAELNGTQV---ESVQLK 80 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTT-TSCEEEEEEE-------TTTTEEEEEESSHHHHHHHHHHTTTEEE---TTEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhh-CCCEEEEEec-------CCCCEEEEEECCHHHHHHHHHHhCCCeE---CCeEEE
Confidence 4688999996 7888888777654 2333344442 5678999999999999999999999866 899999
Q ss_pred eccCCcCCCCCCCc
Q 009405 449 GSIGTPCFTGKQSK 462 (535)
Q Consensus 449 ~S~g~~~~p~k~s~ 462 (535)
...+.+..+..+..
T Consensus 81 v~~a~~~~~~~~~~ 94 (97)
T 1x5p_A 81 VNIARKQPMLDSGP 94 (97)
T ss_dssp EECCSSCCCCCSSC
T ss_pred EEECCCCCCCCCCC
Confidence 98887766555443
No 126
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.10 E-value=5.7e-06 Score=75.78 Aligned_cols=86 Identities=15% Similarity=0.179 Sum_probs=66.0
Q ss_pred hhhhcccEEEEecCCCC-CCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeC
Q 009405 365 VAHEHGTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 443 (535)
Q Consensus 365 ~A~E~GrlVlLqNLDPs-~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~ 443 (535)
.....++.|++.||.++ .|..||.+++.. |+.-..++++....-+....|.|||-|.+.+.|..|+ .|+...| +
T Consensus 205 ~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~---~ 279 (292)
T 2ghp_A 205 SATLEGREIMIRNLSTELLDENLLRESFEG-FGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLL---G 279 (292)
T ss_dssp --CCTTTEEEEEEECTTTCCHHHHHHHHGG-GSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEE---T
T ss_pred ccCCCCceEEEECCCcccCCHHHHHHHHhc-cCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEE---C
Confidence 45667899999999999 998888887764 4444455665533223566899999999999999999 9999876 9
Q ss_pred CceeeeccCCcC
Q 009405 444 GRPLLGSIGTPC 455 (535)
Q Consensus 444 GRPL~~S~g~~~ 455 (535)
||+|..+.+.+.
T Consensus 280 g~~i~V~~a~~k 291 (292)
T 2ghp_A 280 NREISVSLADKK 291 (292)
T ss_dssp TEEEEEEECCCC
T ss_pred CcEEEEEEecCC
Confidence 999998887654
No 127
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.10 E-value=5.3e-06 Score=68.79 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=63.2
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
..+-||+.||++..+..++.+++-+ |++-..++++ ....+..+-|.|||.|.+.+.|+.||..||..-| +||+|.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~-~G~i~~v~i~-~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~---~gr~i~ 79 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRK-YGEVEEVEIL-LHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV---MGNIIH 79 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEE-ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEE-ECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE---CCeEEE
Confidence 3578999999999999999988754 4444455554 3444466778999999999999999999999977 999998
Q ss_pred eccC
Q 009405 449 GSIG 452 (535)
Q Consensus 449 ~S~g 452 (535)
....
T Consensus 80 V~~a 83 (110)
T 3s8s_A 80 AQLD 83 (110)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6543
No 128
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.10 E-value=8.4e-06 Score=66.64 Aligned_cols=92 Identities=15% Similarity=0.141 Sum_probs=63.0
Q ss_pred HHHHhhhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceee
Q 009405 361 ERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL 440 (535)
Q Consensus 361 erl~~A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ 440 (535)
..+....+.++-|++.||++..|..||.+++.. |++-..++++ ....+..+.|.|||.|.+.+.|+.||..++ ..
T Consensus 16 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~-~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~---~~ 90 (109)
T 2rs2_A 16 PRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVM-RDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HE 90 (109)
T ss_dssp ----------CCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEC-CCTTTCCCTTCEEEEESSHHHHHHHHHSSC---EE
T ss_pred ccccccCCCCCEEEEeCCCCCCCHHHHHHHHHc-cCCeEEEEEE-ECCCCCCcCcEEEEEECCHHHHHHHHHHCC---Cc
Confidence 344455677899999999999999998887754 3443344444 333446678999999999999999999985 23
Q ss_pred eeCCceeeeccCCcCCCC
Q 009405 441 LSNGRPLLGSIGTPCFTG 458 (535)
Q Consensus 441 ls~GRPL~~S~g~~~~p~ 458 (535)
+ +||+|....+.+....
T Consensus 91 l-~g~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 91 L-DSKTIDPKVAFPRRAQ 107 (109)
T ss_dssp E-TTEEEEEEECCCCCCC
T ss_pred C-CCEEEEEEEccCCCCC
Confidence 3 9999998877765443
No 129
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.10 E-value=9.6e-06 Score=67.45 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=64.1
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+-|++.||.++.|..||.+++.. |++-..++++.. ..+..+.|.|||.|.+.++|+.|+. ++...+ +||+|
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~---~g~~i 158 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQ-WGTIIDAQLMLD-KDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF---KDRKI 158 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHT-TSCCSEEECCCS-SSSSTTSEEEEEEESSHHHHHHHHH-CSEECS---SSSCE
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHh-CccEEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHh-CCCEEe---CCeEE
Confidence 34678999999999999999988864 455455555443 3346778999999999999999998 665444 99999
Q ss_pred eeccCCcC
Q 009405 448 LGSIGTPC 455 (535)
Q Consensus 448 ~~S~g~~~ 455 (535)
....+.|.
T Consensus 159 ~V~~a~pk 166 (167)
T 2cjk_A 159 EIKRAEPR 166 (167)
T ss_dssp EEEECCCC
T ss_pred EEeecCCC
Confidence 98877664
No 130
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.09 E-value=9.4e-06 Score=70.16 Aligned_cols=86 Identities=16% Similarity=0.109 Sum_probs=65.8
Q ss_pred HhhhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeC
Q 009405 364 RVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 443 (535)
Q Consensus 364 ~~A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~ 443 (535)
..+.+..+-||+.||.+..|..||.+++.. |++-..++++ +...+....|.|||.|.+.+.|+.||..|+...+ +
T Consensus 22 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~---~ 96 (216)
T 2qfj_A 22 QGALAIMSRVYVGSIYYELGEDTIRQAFAP-FGPIKSIDMS-WDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML---G 96 (216)
T ss_dssp HHHHHHHTEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEC-CC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC---C
T ss_pred CcccCcCCEEEEECCCCCCCHHHHHHHHHh-CCCEEEEEEe-ecCCCCccCceEEEEeCCHHHHHHHHHHccCCee---C
Confidence 456777899999999999999999888754 3344445554 3334567889999999999999999999999765 8
Q ss_pred CceeeeccCCc
Q 009405 444 GRPLLGSIGTP 454 (535)
Q Consensus 444 GRPL~~S~g~~ 454 (535)
||+|.......
T Consensus 97 g~~l~v~~~~~ 107 (216)
T 2qfj_A 97 GRNIKVGRPSN 107 (216)
T ss_dssp -CCCEEECCSC
T ss_pred CeeEEEecCCC
Confidence 99998766543
No 131
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=3.9e-06 Score=68.72 Aligned_cols=80 Identities=19% Similarity=0.127 Sum_probs=61.3
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhcc-ceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKEN-CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~-C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
...+.|++.||.+..|..||.+++... ..- ..++|+... +....|.|||.|.+.+.|+.||.. +...| +||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-g~v~~~v~i~~d~--~g~~~G~afV~F~~~~~a~~Al~~-~~~~~---~gr~ 85 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGI-PVDENAVHVLVDN--NGQGLGQALVQFKNEDDARKSERL-HRKKL---NGRE 85 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTS-CCCSTTEEECCCT--TSSCSSCEEEECSSHHHHHHHGGG-CSEEE---TTEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhC-CCcCCeEEEEECC--CCCcceEEEEEECCHHHHHHHHHh-CCCcc---CCeE
Confidence 457889999999999999988877553 322 335555433 577889999999999999999988 66544 9999
Q ss_pred eeeccCCc
Q 009405 447 LLGSIGTP 454 (535)
Q Consensus 447 L~~S~g~~ 454 (535)
|......+
T Consensus 86 i~v~~a~~ 93 (114)
T 2cpy_A 86 AFVHVVTL 93 (114)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 98665543
No 132
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=1.1e-05 Score=65.47 Aligned_cols=85 Identities=11% Similarity=0.086 Sum_probs=64.4
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+-||+.||.+..|..||.+++.. |.+-..++++. ...+..+.|.|||.|.+.+.|+.||.. +...| +||+|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~-~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~---~g~~l 98 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQ-WGKLTDCVVMR-DPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI---DGRVV 98 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTS-SCCCSEEEEEC-CTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE---TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEE-CCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE---CCEEE
Confidence 45688999999999999998887743 44434455443 334466789999999999999999998 55433 99999
Q ss_pred eeccCCcCCCC
Q 009405 448 LGSIGTPCFTG 458 (535)
Q Consensus 448 ~~S~g~~~~p~ 458 (535)
....+.+....
T Consensus 99 ~V~~a~~~~~~ 109 (116)
T 1x4b_A 99 EPKRAVAREES 109 (116)
T ss_dssp EEECCSSCCCC
T ss_pred EEEECCCCccC
Confidence 98887665443
No 133
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.08 E-value=8.4e-06 Score=60.94 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=55.4
Q ss_pred EEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeeec
Q 009405 373 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 450 (535)
Q Consensus 373 VlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~S 450 (535)
|++.||.+..|..||.+++.+ +++--..++ +...-+..+.|.|||.|.+.++|+.||.. +..-+ +||+|...
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~---~g~~l~v~ 73 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGG-FGEVESIEL-PMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV---GLSKCEIK 73 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHH-HSCCSEECC-CCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB---TTBCCCEE
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cCCeEEEEE-EecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE---CCEEEEEE
Confidence 689999999999999998876 344334443 44445577889999999999999999995 54433 89998654
No 134
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.08 E-value=4.9e-06 Score=70.02 Aligned_cols=89 Identities=11% Similarity=0.151 Sum_probs=64.5
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhh-ccceeeeccC--CCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCC
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPR--VAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 444 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afk-e~C~AKmI~~--~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~G 444 (535)
..++.||+.||.+..|..||.+++..... ..|..+++-. ...+....|.|||.|.+.+.|+.||..|+..-| +|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~---~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL---FG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE---TT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe---CC
Confidence 35688999999999999999988765221 1221111111 012456789999999999999999999999866 89
Q ss_pred ceeeeccCCcCCCCC
Q 009405 445 RPLLGSIGTPCFTGK 459 (535)
Q Consensus 445 RPL~~S~g~~~~p~k 459 (535)
|||....+.+.-|..
T Consensus 120 ~~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 120 KPMVVQFARSARPKQ 134 (143)
T ss_dssp EECEEEECCCSCC--
T ss_pred cEEEEEECCCCCCcc
Confidence 999988886655543
No 135
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.07 E-value=5.9e-06 Score=68.77 Aligned_cols=81 Identities=12% Similarity=0.206 Sum_probs=62.5
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
.++-|++.||++..|..||.+++.. |+.-..++++... .....|.|||.|.+.+.|+.|+..|+...++--.||||.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~~~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSS-FGQIEECRILRGP--DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHh-CCCEEEEEEEECC--CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 5678999999999999998888753 4444556665543 255678899999999999999999999876322269998
Q ss_pred eccC
Q 009405 449 GSIG 452 (535)
Q Consensus 449 ~S~g 452 (535)
.+.+
T Consensus 171 V~~a 174 (175)
T 3nmr_A 171 VKFA 174 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7654
No 136
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.05 E-value=9e-06 Score=70.26 Aligned_cols=78 Identities=15% Similarity=0.067 Sum_probs=64.8
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeC-Ccee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN-GRPL 447 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~-GRPL 447 (535)
.++.|++.||.+..+..||.+++....-.-..+++++. ..|.|||.|.+.+.|+.|+..|+...+ + ||||
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~---~~g~~l 189 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------DRKMALIQMGSVEEAVQALIDLHNHDL---GENHHL 189 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST------TSSCEEEECSSHHHHHHHHHHHTSSCC---SSCCSC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCcc---CCCCeE
Confidence 37899999999999999999888765215566777764 269999999999999999999999876 6 9999
Q ss_pred eeccCCcC
Q 009405 448 LGSIGTPC 455 (535)
Q Consensus 448 ~~S~g~~~ 455 (535)
..+.+.+.
T Consensus 190 ~v~~a~~~ 197 (198)
T 1qm9_A 190 RVSFSKST 197 (198)
T ss_dssp CEEEECCC
T ss_pred EEEeeccc
Confidence 98877653
No 137
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.04 E-value=9.5e-06 Score=73.04 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=65.3
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhh-ccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeC-Cce
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN-GRP 446 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afk-e~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~-GRP 446 (535)
.++.|++.||.+..+..||.+++... + +-+.+++++. ..|.|||.|.+.+.|+.||..|+...+ + ||+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~-G~~i~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~---~~g~~ 219 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSN-GGVVKGFKFFQK------DRKMALIQMGSVEEAVQALIDLHNHDL---GENHH 219 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTT-SCCEEEEEECSS------STTCEEEEESSHHHHHHHHHHHTTCBS---SSSCB
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHc-CCCeeEEEEEEC------CCcEEEEEECCHHHHHHHHHHHCCCcc---CCCCe
Confidence 46899999999999999999888765 4 5566777764 368999999999999999999999876 6 999
Q ss_pred eeeccCCcC
Q 009405 447 LLGSIGTPC 455 (535)
Q Consensus 447 L~~S~g~~~ 455 (535)
|..+.+.+.
T Consensus 220 l~v~~a~~~ 228 (229)
T 2adc_A 220 LRVSFSKST 228 (229)
T ss_dssp CEEEECSSC
T ss_pred EEEEEecCC
Confidence 998887654
No 138
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.04 E-value=6e-06 Score=68.99 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=61.9
Q ss_pred cccEEEEecCCC-CCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 369 HGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 369 ~GrlVlLqNLDP-s~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
.++.||+.||.+ ..|..||++++- -|++-..++|+.. -|.|||.|.+.++|+.||..|+..=+.+ +||||
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~-~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~-~Gr~l 84 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVE-PFGVISNHLILNK-------INEAFIEMATTEDAQAAVDYYTTTPALV-FGKPV 84 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTG-GGSCEEEEEECSS-------SSCEEEEESSHHHHHHHHHHHHHSCCEE-TTEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHH-hcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHHcCCCceE-CCcEE
Confidence 478999999999 999999988775 4666777787742 3889999999999999999998642223 89999
Q ss_pred eeccCC
Q 009405 448 LGSIGT 453 (535)
Q Consensus 448 ~~S~g~ 453 (535)
+...+.
T Consensus 85 ~V~~a~ 90 (102)
T 1x4d_A 85 RVHLSQ 90 (102)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 987765
No 139
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.03 E-value=8.6e-06 Score=69.50 Aligned_cols=83 Identities=13% Similarity=0.139 Sum_probs=65.6
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++.|++.||.+..+..||.+++.. |+.-..++++... -+....|.|||.|.+.+.|+.|+..|+...| +||+|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 186 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDS-ATGLSKGYAFCEYVDINVTDQAIAGLNGMQL---GDKKL 186 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHT-BSCEEEEEEEECT-TTCSEEEEEEEEESSSSHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccEEEEeecC-CCCCcceEEEEEECCHHHHHHHHHHcCCCEE---CCEEE
Confidence 45689999999999999998888765 4444455554332 2355678999999999999999999999876 99999
Q ss_pred eeccCCcC
Q 009405 448 LGSIGTPC 455 (535)
Q Consensus 448 ~~S~g~~~ 455 (535)
..+.+.+.
T Consensus 187 ~v~~a~~~ 194 (198)
T 2yh0_A 187 LVQRASVG 194 (198)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 98877654
No 140
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.03 E-value=8.7e-06 Score=74.29 Aligned_cols=106 Identities=20% Similarity=0.189 Sum_probs=78.8
Q ss_pred HHHHHhhhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhcccee
Q 009405 360 EERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 439 (535)
Q Consensus 360 eerl~~A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL 439 (535)
.++++......+.||+.||.++.|..||.+++.... -..+++ ..+.|.|||.|.+.+.|+.|+..|+...+
T Consensus 12 ~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G--i~~~~~-------~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 82 (284)
T 3smz_A 12 LEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDYE--LKYCFV-------DKYKGTAFVTLLNGEQAEAAINAFHQSRL 82 (284)
T ss_dssp HHHHHHHHHCCCEEEEECCCTTCCHHHHHHHTTTSC--EEEEEE-------ETTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred HhhhhccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC--CEEEEE-------ecCCCEEEEEeCCHHHHHHHHHHcCCCee
Confidence 345667777889999999999999999998877643 223333 56789999999999999999999999876
Q ss_pred eeeCCceeeeccCCcCCCCCCCccccceehhhHHHHHHHHHHhhhc
Q 009405 440 LLSNGRPLLGSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAVS 485 (535)
Q Consensus 440 ~ls~GRPL~~S~g~~~~p~k~s~f~GHl~i~k~r~q~qrEmr~AVS 485 (535)
+||||..... |....-|+|.|.-+- ..+++++..+
T Consensus 83 ---~g~~i~v~~~----~~~~~l~v~nlp~~~----t~~~l~~~f~ 117 (284)
T 3smz_A 83 ---RERELSVQLQ----PTDALLCVANLPPSL----TQQQFEELVR 117 (284)
T ss_dssp ---TTEECEEEEC----CCSCEEEEESCCTTC----CHHHHHHHHG
T ss_pred ---CCeEEEEEec----CCCCEEEEcCCCCcC----CHHHHHHHHH
Confidence 8999987652 334556777765443 2344554443
No 141
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.02 E-value=1.5e-05 Score=66.22 Aligned_cols=83 Identities=14% Similarity=0.067 Sum_probs=57.1
Q ss_pred cccEEEEecCC-CCCCchhHHHHHHHHhhc---cceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCC
Q 009405 369 HGTLVVLENLD-PSYTSTVVEDLVWHAFKE---NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 444 (535)
Q Consensus 369 ~GrlVlLqNLD-Ps~tS~eVEDli~~afke---~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~G 444 (535)
-.++|+|.|+- |.==.+|+++-|+..|.. --.++++.....+....|.|||.|.+.++|+.|+..|+...+ +|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~---~G 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF---GG 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE---TT
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE---CC
Confidence 46899999993 321124556666666654 223343322212234579999999999999999999999977 99
Q ss_pred ceeeeccCCc
Q 009405 445 RPLLGSIGTP 454 (535)
Q Consensus 445 RPL~~S~g~~ 454 (535)
|+|.++...+
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999887754
No 142
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.02 E-value=5.7e-06 Score=70.64 Aligned_cols=77 Identities=23% Similarity=0.283 Sum_probs=62.0
Q ss_pred cccEEEEecCCCC-CCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 369 HGTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 369 ~GrlVlLqNLDPs-~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
-++.||+.||.+. .|..||++++.. |++-..++|+. .-|.|||.|.+.++|+.||..|+..=+.+ +||||
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~-fG~V~~v~i~~-------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l-~Gr~l 94 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEP-YGKIKNYILMR-------MKSQAFIEMETREDAMAMVDHCLKKALWF-QGRCV 94 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTT-TSCCSEEEEET-------TTTEEEEECSSHHHHHHHHHHHHHSCCCS-SSSCC
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHh-cCCEEEEEEec-------CCCEEEEEECCHHHHHHHHHHhccCCceE-CCEEE
Confidence 4789999999998 999999988754 66666777763 35999999999999999999997532222 89999
Q ss_pred eeccCCc
Q 009405 448 LGSIGTP 454 (535)
Q Consensus 448 ~~S~g~~ 454 (535)
+...+..
T Consensus 95 ~V~~a~~ 101 (112)
T 1x4f_A 95 KVDLSEK 101 (112)
T ss_dssp EEEEECS
T ss_pred EEEECcc
Confidence 9877644
No 143
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.01 E-value=1.4e-05 Score=64.15 Aligned_cols=77 Identities=8% Similarity=0.075 Sum_probs=60.4
Q ss_pred HhhhhcccEEEEecCCC-CCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeee
Q 009405 364 RVAHEHGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS 442 (535)
Q Consensus 364 ~~A~E~GrlVlLqNLDP-s~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls 442 (535)
......++-||+.||.+ ..+..||.+++.. |++--.+++ ..|.|||.|.+.+.|+.||..|+...+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~-~G~v~~v~i---------~~g~afV~f~~~~~A~~Ai~~l~g~~~--- 82 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINI---------KNAFGFIQFDNPQSVRDAIEXESQEMN--- 82 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGG-GSCEEEEEE---------CSSEEEEEESSHHHHHHHHHHHTTSEE---
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEE---
Confidence 34455689999999999 9999999888765 444334444 169999999999999999999999866
Q ss_pred CCceeeeccCC
Q 009405 443 NGRPLLGSIGT 453 (535)
Q Consensus 443 ~GRPL~~S~g~ 453 (535)
+||+|....+.
T Consensus 83 ~g~~l~V~~a~ 93 (97)
T 2xnq_A 83 FGKKLILEVSS 93 (97)
T ss_dssp TTEECEEEECC
T ss_pred CCEEEEEEecC
Confidence 89999876553
No 144
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.01 E-value=2.4e-05 Score=63.18 Aligned_cols=78 Identities=13% Similarity=0.085 Sum_probs=56.6
Q ss_pred cccEEEEecCCCCC------CchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeee
Q 009405 369 HGTLVVLENLDPSY------TSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS 442 (535)
Q Consensus 369 ~GrlVlLqNLDPs~------tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls 442 (535)
.++.|++.||.+.. |..+|.+++.. |+.--.++|+ + -+....|.|||.|.+.+.|+.||..|+..-+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~v~~v~i~-~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~--- 86 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYP-E--EDGKTKGYIFLEYASPAHAVDAVKNADGYKL--- 86 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGG-GSCEEEEECC-C--BTTBSCCEEEEEECSSSHHHHHHHHCSSEEC---
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhc-CCCEEEEEee-C--CCCCeeeEEEEEECCHHHHHHHHHHhCCccc---
Confidence 36899999999876 33444444432 2333334444 2 3456779999999999999999999999866
Q ss_pred CCc-eeeeccCC
Q 009405 443 NGR-PLLGSIGT 453 (535)
Q Consensus 443 ~GR-PL~~S~g~ 453 (535)
+|| ||....+.
T Consensus 87 ~g~~~l~V~~a~ 98 (105)
T 2nlw_A 87 DKQHTFRVNLFT 98 (105)
T ss_dssp STTCEEEEECSC
T ss_pred CCCceEEEEEcc
Confidence 898 99877664
No 145
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.00 E-value=9.4e-06 Score=64.25 Aligned_cols=74 Identities=8% Similarity=0.079 Sum_probs=59.4
Q ss_pred hcccEEEEecCCC-CCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 368 EHGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 368 E~GrlVlLqNLDP-s~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
..++-||+.||.+ ..|..||.+++.. |+.-..+++. .|.|||.|.+.++|+.||..|+...+ +||+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~---------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 74 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINIK---------NAFGFIQFDNPQSVRDAIECESQEMN---FGKK 74 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTT-TCCCCEEEEE---------TTEEEEEESCHHHHHHHHHHHTCSSC---BTTT
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHcCCCee---CCcE
Confidence 4678899999999 9999999888765 3333344441 69999999999999999999999866 7999
Q ss_pred eeeccCCc
Q 009405 447 LLGSIGTP 454 (535)
Q Consensus 447 L~~S~g~~ 454 (535)
|......+
T Consensus 75 l~V~~a~~ 82 (96)
T 2kvi_A 75 LILEVSSS 82 (96)
T ss_dssp BCEEEEEC
T ss_pred EEEEEcCc
Confidence 98766643
No 146
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=2.6e-06 Score=70.54 Aligned_cols=80 Identities=18% Similarity=0.108 Sum_probs=59.7
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
...++.|++.||.+..|..||.+++.. |..-..+.+|.... +....|.|||.|.+.+.|+.||. |+...| +||+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~~~~~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~g~~~---~gr~ 95 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKK-LDIVEDSIYIAYGP-NGKATGEGFVEFRNEADYKAALC-RHKQYM---GNRF 95 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCS-SCBCTTTCEEEECT-TSSEEEEEEEEBSSSHHHHHHHT-SCSBCS---TTSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEECC-CCCCCeEEEEEECCHHHHHHHHH-hCCCeE---CCcE
Confidence 456789999999999999888877643 22222233443322 45567999999999999999999 988765 9999
Q ss_pred eeeccC
Q 009405 447 LLGSIG 452 (535)
Q Consensus 447 L~~S~g 452 (535)
|.....
T Consensus 96 i~V~~a 101 (124)
T 1wel_A 96 IQVHPI 101 (124)
T ss_dssp BEEEEE
T ss_pred EEEEEC
Confidence 986544
No 147
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.99 E-value=2.4e-05 Score=64.04 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=56.6
Q ss_pred ccEEEEecCCCCCC--c-----hhHHHHHHHHhhccc---eeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhcccee
Q 009405 370 GTLVVLENLDPSYT--S-----TVVEDLVWHAFKENC---SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 439 (535)
Q Consensus 370 GrlVlLqNLDPs~t--S-----~eVEDli~~afke~C---~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL 439 (535)
.++|+|.||-..-. . .++|+-|+..|..-- .+.| + +....|.|||.|.+.+.|+.||..|+..-+
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~----~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-F----DRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-E----TTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-e----cCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 68899999922211 1 235677787776522 3333 2 122579999999999999999999999866
Q ss_pred eeeCCceeeeccCCcC
Q 009405 440 LLSNGRPLLGSIGTPC 455 (535)
Q Consensus 440 ~ls~GRPL~~S~g~~~ 455 (535)
+||||......+.
T Consensus 90 ---~gr~l~v~~a~~~ 102 (112)
T 2dit_A 90 ---GGRQITAQAWDGT 102 (112)
T ss_dssp ---TTEECEEEECCSC
T ss_pred ---CCcEEEEEEeCCC
Confidence 8999999887664
No 148
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.99 E-value=2e-05 Score=66.34 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=57.3
Q ss_pred cEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeeec
Q 009405 371 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 450 (535)
Q Consensus 371 rlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~S 450 (535)
.=+|+.||+|+.|.+++.+|+-+... --..+++. +-|.|||.|.|.+-|+.||..||.. - | +||||...
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~-V~~~~l~~-------~kGfaFVey~~~~eA~~Ai~~Ln~~-~-l-~gr~I~V~ 76 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGP-LVSFHPYL-------NQGIALCKYTTREEANKAQMALNNC-V-L-ANTTIFAE 76 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSC-EEEEEEET-------TTTEEEEEESSHHHHHHHHHHHTTE-E-E-TTEEEEEE
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCC-EEEEEEcC-------CCcEEEEEECCHHHHHHHHHHhcCC-E-E-CCcEEEEE
Confidence 45789999999999999999887543 22344432 6899999999999999999999964 3 2 89999977
Q ss_pred cC
Q 009405 451 IG 452 (535)
Q Consensus 451 ~g 452 (535)
.+
T Consensus 77 ~A 78 (89)
T 2wbr_A 77 SP 78 (89)
T ss_dssp CC
T ss_pred EC
Confidence 66
No 149
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.98 E-value=4e-06 Score=67.37 Aligned_cols=81 Identities=11% Similarity=0.042 Sum_probs=61.1
Q ss_pred cccEEEEecCCC------CCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeee
Q 009405 369 HGTLVVLENLDP------SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS 442 (535)
Q Consensus 369 ~GrlVlLqNLDP------s~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls 442 (535)
.++.|++.||.+ ..+..+|.+++-+ |+.-..++| +....+...-|.|||.|.+.+.|+.||..|+..-+
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~-~G~i~~v~i-~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--- 79 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSK-AGKVVNMEF-PIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL--- 79 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHT-TSCEEEEEC-CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS---
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHh-cCCEeEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc---
Confidence 468999999988 7777777766653 344444544 34444456779999999999999999999999866
Q ss_pred CC-ceeeeccCCc
Q 009405 443 NG-RPLLGSIGTP 454 (535)
Q Consensus 443 ~G-RPL~~S~g~~ 454 (535)
+| |+|..+.+.|
T Consensus 80 ~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 80 DLKHRLFLYTMKD 92 (100)
T ss_dssp SSSCBCEEEESHH
T ss_pred CCCeEEEEEECch
Confidence 77 9998776543
No 150
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.97 E-value=1.1e-05 Score=66.32 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=59.6
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++-||+.||.+..|..||.+++-. |+.-..++|+.... ...-|.|||.|.+.+.|+.||. ++..-+ +||+|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~-~G~v~~v~i~~d~~--g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~---~gr~l 81 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRTLH--KAFKGSIFVVFDSIESAKKFVE-TPGQKY---KETDL 81 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHT-SSCEEEEEEECCCT--TSCCCEEEEEESSHHHHHHHHT-SSCCCC---TTTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhh-cCCEEEEEEEECCC--CCCccEEEEEECCHHHHHHHHH-cCCCEE---CCEEE
Confidence 45678999999999999999888764 44445566554433 7778999999999999999999 766533 89998
Q ss_pred eec
Q 009405 448 LGS 450 (535)
Q Consensus 448 ~~S 450 (535)
...
T Consensus 82 ~V~ 84 (103)
T 1s79_A 82 LIL 84 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 744
No 151
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.97 E-value=1.1e-05 Score=67.64 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=63.9
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhcc--ceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccc----eeee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKEN--CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG----CLLL 441 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~--C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~eg----CL~l 441 (535)
+..+-||+.||++..|..||.+++.. |++- +.++++ ....+...-|.|||.|.+. .|+.||..|+.. .|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~-~G~v~~~~v~i~-~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~-- 95 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAP-YAVLSSSNVRVI-KDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI-- 95 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGG-GCCCCTTTEECC-BCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcceeeEEEE-EcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC--
Confidence 34678999999999999999988764 3333 224544 4444566789999999999 999999999997 55
Q ss_pred eCCceeeeccCCcC
Q 009405 442 SNGRPLLGSIGTPC 455 (535)
Q Consensus 442 s~GRPL~~S~g~~~ 455 (535)
+||+|....+.+.
T Consensus 96 -~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 96 -DGKTINVEFAKGS 108 (131)
T ss_dssp -GGCCCCCEECCCS
T ss_pred -CCEEEEEEECCCC
Confidence 8999997776554
No 152
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.96 E-value=1.9e-05 Score=67.54 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=60.6
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
--|+||+.||.-..+..+|-.-+++.|.+ |--+++..+. |+|||.|.+.+.|..|+..|+..=| +|||+.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~-yGG~Vl~Vtg------G~AfV~F~~~esA~~A~~~l~G~~l---~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDN-CGGKVLSITG------CSAILRFINQDSAERAQKRMENEDV---FGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHT-TTCCEEECCT------TCEEEEESSHHHHHHHHHHHTTCCS---SSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHH-cCCeeEEEec------CEEEEEECCHHHHHHHHHHhcCCcc---CCceEE
Confidence 45789999999999998888777777764 4333444343 9999999999999999999999966 999998
Q ss_pred eccC
Q 009405 449 GSIG 452 (535)
Q Consensus 449 ~S~g 452 (535)
-+.+
T Consensus 78 v~~A 81 (96)
T 2diu_A 78 VSFT 81 (96)
T ss_dssp EESS
T ss_pred EEec
Confidence 7765
No 153
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.95 E-value=9.7e-06 Score=73.99 Aligned_cols=84 Identities=15% Similarity=0.161 Sum_probs=67.2
Q ss_pred hcccEEEEecCCCCC-CchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 368 EHGTLVVLENLDPSY-TSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 368 E~GrlVlLqNLDPs~-tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
..++.|++.||++++ +..||.+++.. |+.-..++++... +....|.|||-|.+.+.|..|+..|+...+ +|||
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~-~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 255 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSA-VHSPTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADGLSL---GGSH 255 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCS-SSCCSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhC-CCCeEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCCCcc---CCeE
Confidence 467889999999998 66887777653 4444456655433 466789999999999999999999999977 9999
Q ss_pred eeeccCCcCCC
Q 009405 447 LLGSIGTPCFT 457 (535)
Q Consensus 447 L~~S~g~~~~p 457 (535)
|..+.+.+..+
T Consensus 256 l~v~~a~~~~~ 266 (284)
T 3smz_A 256 LRVSFCAPGPP 266 (284)
T ss_dssp CEEEECCSSSC
T ss_pred EEEEEecCCCc
Confidence 99998877654
No 154
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.95 E-value=1.8e-05 Score=62.88 Aligned_cols=85 Identities=15% Similarity=0.056 Sum_probs=63.0
Q ss_pred hhhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCC
Q 009405 365 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 444 (535)
Q Consensus 365 ~A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~G 444 (535)
.+.+..+-||+.||.+..+..||.+++.+ |.+--.++++. ...+...-|.|||.|.+.+.|+.||.. +. . -+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~-~~~~g~~~g~afV~f~~~~~a~~A~~~---~~-~-~~g 82 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFST-FGEVLMVQVKK-DLKTGHSKGFGFVRFTEYETQVKVMSQ---RH-M-IDG 82 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEEE-CSSSCSEEEEEEEEESSHHHHHHHHHS---CE-E-ETT
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHh-cCCeEEEEEEe-cCCCCCccceEEEEECCHHHHHHHHHc---CC-e-eCC
Confidence 34566788999999999999999888855 33333444443 333456678999999999999999994 32 2 399
Q ss_pred ceeeeccCCcCC
Q 009405 445 RPLLGSIGTPCF 456 (535)
Q Consensus 445 RPL~~S~g~~~~ 456 (535)
|+|......+..
T Consensus 83 ~~l~v~~a~~~~ 94 (103)
T 2cqg_A 83 RWCDCKLPNSKQ 94 (103)
T ss_dssp EEEEEECCCTTC
T ss_pred eEEEEEecCCCC
Confidence 999988776643
No 155
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.94 E-value=1.3e-05 Score=66.93 Aligned_cols=78 Identities=14% Similarity=0.156 Sum_probs=62.0
Q ss_pred ccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeee
Q 009405 370 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 449 (535)
Q Consensus 370 GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~ 449 (535)
++.|++.||.+..|..||.+++.. |+.-..++++.. .-+....|.|||.|.+.+.|+.|+..|+..-+ +||+|..
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~V 168 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKD-SATGLSKGYAFCEYVDINVTDQAIAGLNGMQL---GDKKLLV 168 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHT-TSCEEEEEEEEC-TTTCSEEEEEEEEESSTTHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHh-cCCceEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHcCCCEE---CCeEEEE
Confidence 788999999999999999888875 444444555433 23455678999999999999999999999866 8999986
Q ss_pred ccC
Q 009405 450 SIG 452 (535)
Q Consensus 450 S~g 452 (535)
+.+
T Consensus 169 ~~A 171 (172)
T 2g4b_A 169 QRA 171 (172)
T ss_dssp EEC
T ss_pred EeC
Confidence 643
No 156
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.94 E-value=9.4e-06 Score=67.95 Aligned_cols=77 Identities=13% Similarity=0.021 Sum_probs=59.2
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++.|++.||.+..|..||.+++... .-..++|+- ..- ....|.|||.|.+.+.|+.|| .++...| +||+|
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~--~v~~v~i~~-d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~---~gr~i 85 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL--RVDAVHLLK-DHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLM---IQRYV 85 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS--CCCEEEECC-CTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEE---TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC--CeeEEEEEE-CCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeE---CCeEE
Confidence 446799999999999999999888654 223444443 222 566899999999999999999 7887655 89998
Q ss_pred eeccC
Q 009405 448 LGSIG 452 (535)
Q Consensus 448 ~~S~g 452 (535)
.-...
T Consensus 86 ~V~~a 90 (109)
T 2dnn_A 86 EVSPA 90 (109)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 75443
No 157
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.94 E-value=1.6e-05 Score=72.02 Aligned_cols=74 Identities=12% Similarity=0.192 Sum_probs=62.3
Q ss_pred cccEEEEecCC-CCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 369 HGTLVVLENLD-PSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 369 ~GrlVlLqNLD-Ps~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
.++.||+.||+ +..|.+++.+|+- .+++-..++++.. +-|.|||.|.+.++|+.||..|+...| +||||
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~-~~G~v~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~lng~~~---~g~~l 72 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFC-LYGNVEKVKFMKS------KPGAAMVEMADGYAVDRAITHLNNNFM---FGQKM 72 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHT-TTSCEEEEEECTT------STTCEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHH-hcCCeEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCEE---CCceE
Confidence 57899999999 6999999988875 4566667777642 369999999999999999999999876 89999
Q ss_pred eeccC
Q 009405 448 LGSIG 452 (535)
Q Consensus 448 ~~S~g 452 (535)
.....
T Consensus 73 ~v~~s 77 (205)
T 3tyt_A 73 NVCVS 77 (205)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 87755
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.92 E-value=2.6e-05 Score=66.49 Aligned_cols=82 Identities=10% Similarity=0.077 Sum_probs=59.8
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhc-ccee---eeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCC
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSA---KMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 444 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke-~C~A---KmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~G 444 (535)
..|-||+.||.++.|..||.+++.....- .|.. +.|.... ...+.|.|||.|.+.+.|+.|| .|+..-+ +|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~-~~~~~g~afV~F~~~~~A~~Al-~l~g~~~---~g 77 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ-INQDKNFAFLEFRSVDETTQAM-AFDGIIF---QG 77 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEE-EETTTTEEEEEESCSHHHHHHG-GGTTEEE---TT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeE-ecCCCCEEEEEeCCHHHHHHHH-HhcCCEE---cC
Confidence 46889999999999999999999875421 1110 0111111 1345799999999999999999 8988654 99
Q ss_pred ceeeeccCCcC
Q 009405 445 RPLLGSIGTPC 455 (535)
Q Consensus 445 RPL~~S~g~~~ 455 (535)
|||........
T Consensus 78 ~~i~v~~~~~~ 88 (198)
T 2yh0_A 78 QSLKIRRPHDY 88 (198)
T ss_dssp EEEEEECCCCC
T ss_pred ceEEEeCCCCC
Confidence 99988776543
No 159
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.92 E-value=2.2e-05 Score=64.64 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=54.9
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
.+.-|++.||.+..|..||.+++.+ |.+-..++++.. |.|||.|.+.+.|+.||..|+..-| +||++
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~g~~~---~gr~~ 81 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKLDNTKF---RSHEG 81 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGG-GSCEEEEEECTT--------SEEEEEESSHHHHHHHHHHHTTCBC---CCTTS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEecC--------CEEEEEECCHHHHHHHHHHhCCCEE---CCcEe
Confidence 5678999999999999999998764 445555666432 9999999999999999999999866 89883
No 160
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.90 E-value=1.1e-05 Score=67.09 Aligned_cols=100 Identities=13% Similarity=0.152 Sum_probs=72.3
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCC--CCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFAS--PYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~ss--pn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
..|-||+.||.++.|..||.+++.. |++-..++++... ... .+.|.|||.|.+.+.|+.|+..|+..-++-..+||
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~ 79 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQ-YGAVYEINVLRDR-SQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHP 79 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEEC-SSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEecC-CCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccc
Confidence 4578999999999999999998865 3444455554332 223 56789999999999999999999987664444788
Q ss_pred eeeccCCcCCC---CCCCccccceehh
Q 009405 447 LLGSIGTPCFT---GKQSKFVGHLALD 470 (535)
Q Consensus 447 L~~S~g~~~~p---~k~s~f~GHl~i~ 470 (535)
+......+..+ ....-|+|.|.-+
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~v~nl~~~ 106 (175)
T 3nmr_A 80 IQMKPADSEKNNAVEDRKLFIGMISKK 106 (175)
T ss_dssp CEEEECGGGCCSCGGGSEEEEESCCTT
T ss_pred eEEccccccccccCCCCeEEEcCCCCc
Confidence 87666544433 2245677777554
No 161
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.89 E-value=2.8e-05 Score=71.20 Aligned_cols=96 Identities=18% Similarity=0.242 Sum_probs=69.6
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhh-ccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afk-e~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..+.|++.||.+..|..+|.+++.. ++ +-..++++.... +...|.|||.|.+.+.|+.|+..|+...+ +||||
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 189 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQD-INVVALSIRLPSLRF--NTSRRFAYIDVTSKEDARYCVEKLNGLKI---EGYTL 189 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHH-TTCCCCEEECC---------CCEEEEECSSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-hCCCeEEEEEEeCCC--CCcceEEEEEECCHHHHHHHHHHhCCCEe---CCcEE
Confidence 5788999999999999999998877 44 545555554332 56789999999999999999999998866 99999
Q ss_pred eeccCCcCCCC---------CCCccccceehh
Q 009405 448 LGSIGTPCFTG---------KQSKFVGHLALD 470 (535)
Q Consensus 448 ~~S~g~~~~p~---------k~s~f~GHl~i~ 470 (535)
......|.... ...-|+|+|.-+
T Consensus 190 ~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~ 221 (292)
T 2ghp_A 190 VTKVSNPLEKSKRTDSATLEGREIMIRNLSTE 221 (292)
T ss_dssp EEEECCCC---------CCTTTEEEEEEECTT
T ss_pred EEEECCCCcccccccccCCCCceEEEECCCcc
Confidence 98776554322 234567776644
No 162
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.89 E-value=1.6e-05 Score=64.06 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=57.8
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccce-eeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCS-AKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~-AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
..++.|++.||.+..|..||.+++.... .--. .+ |+.. .+....|.|||.|.+.+.|+.||.+ +..-+ +||+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~v~~~v~-i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~---~gr~ 85 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLE-IVPNGMT-LPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERI---GHRY 85 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCC-EEEEEEE-CCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCS---SSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CcceeEE-EEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccchh---CCcE
Confidence 4578899999999999988877765422 1111 23 3333 4567789999999999999999998 65544 8999
Q ss_pred eeeccCC
Q 009405 447 LLGSIGT 453 (535)
Q Consensus 447 L~~S~g~ 453 (535)
|.-....
T Consensus 86 i~v~~~~ 92 (104)
T 1wg5_A 86 IEIFKSS 92 (104)
T ss_dssp CEEEEEC
T ss_pred EEEEECC
Confidence 8754443
No 163
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.88 E-value=1.2e-05 Score=65.06 Aligned_cols=80 Identities=9% Similarity=-0.031 Sum_probs=59.0
Q ss_pred hhhcccEEEEecCCCCCCchhHHHHHHHHhhc--cceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeC
Q 009405 366 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE--NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 443 (535)
Q Consensus 366 A~E~GrlVlLqNLDPs~tS~eVEDli~~afke--~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~ 443 (535)
+...++.|++.||.+..|..||.+++.....- --.++++ ...- ....|.|||.|.+.+.|+.||. ++...+ +
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~-~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~---~ 80 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFL-LNRD-GKRRGDALIEMESEQDVQKALE-KHRMYM---G 80 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECC-CCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCS---S
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEE-ECCC-CCEeeEEEEEECCHHHHHHHHH-hCccee---C
Confidence 34578899999999999999988877642110 1223333 3333 6678999999999999999999 887654 8
Q ss_pred Cceeeecc
Q 009405 444 GRPLLGSI 451 (535)
Q Consensus 444 GRPL~~S~ 451 (535)
||+|.-..
T Consensus 81 gr~i~V~~ 88 (107)
T 2lmi_A 81 QRYVEVYE 88 (107)
T ss_dssp SSCCCCEE
T ss_pred CeEEEEEE
Confidence 99987443
No 164
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.85 E-value=3.8e-05 Score=70.03 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=64.4
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhcc---ceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeC
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKEN---CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 443 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke~---C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~ 443 (535)
....+.||+.||.+..|..||+..+.+.|..- ...+++. +..+-|.|||.|.+.+.|+.||..|+..-| +
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~ 78 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR----SLKMRGQAFVIFKEVSSATNALRSMQGFPF---Y 78 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC----CCCcceEEEEEECCHHHHHHHHHHhcCCee---C
Confidence 35578999999999999999998777777652 2333332 566779999999999999999999998644 8
Q ss_pred CceeeeccCC
Q 009405 444 GRPLLGSIGT 453 (535)
Q Consensus 444 GRPL~~S~g~ 453 (535)
||+|......
T Consensus 79 g~~l~v~~a~ 88 (282)
T 3pgw_A 79 DKPMRIQYAK 88 (282)
T ss_pred CcEEEEEEec
Confidence 9999877663
No 165
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.85 E-value=8.1e-06 Score=66.53 Aligned_cols=78 Identities=14% Similarity=0.044 Sum_probs=59.4
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++.|++.||.+..|..||.+++.... ...++++-.. +....|.|||.|.+.+.|+.|| +++...| +||+|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G--~~~v~i~~d~--~g~~~G~afV~F~~~~~a~~Al-~~~~~~~---~gr~i 84 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN--PMRVHIEIGP--DGRVTGEADVEFATHEDAVAAM-AKDKANM---QHRYV 84 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC--CSEEEEEESS--SSCEEEEEEEECSSSHHHHHHH-TTSSCCS---SSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC--ceEEEEEECC--CCCEeeEEEEEECCHHHHHHHH-HhCCCeE---CCcEE
Confidence 4568899999999999999888776532 2355655433 4667889999999999999999 5776544 89998
Q ss_pred eeccCC
Q 009405 448 LGSIGT 453 (535)
Q Consensus 448 ~~S~g~ 453 (535)
.-....
T Consensus 85 ~V~~~~ 90 (102)
T 1wez_A 85 ELFLNS 90 (102)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 755443
No 166
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.85 E-value=3e-05 Score=66.99 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=60.9
Q ss_pred ccEEEEecCCC-CCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 370 GTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 370 GrlVlLqNLDP-s~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
++.||+.||.| ..+..||.+++.. |+.-..++++... .|.|||.|.+.+.|+.||..|+...+ +||||.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~-~G~i~~v~i~~~~------~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l~ 72 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL---HGKPIR 72 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHT-TCCCSEEECSTTC------SSCCEEECTTTHHHHHHHHHHTTCCC---SSCCCE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCee---cCeEEE
Confidence 68899999999 9999999988865 3444455555422 78999999999999999999999866 899998
Q ss_pred eccCCc
Q 009405 449 GSIGTP 454 (535)
Q Consensus 449 ~S~g~~ 454 (535)
.....+
T Consensus 73 v~~a~~ 78 (198)
T 1qm9_A 73 ITLSKH 78 (198)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 876543
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.84 E-value=1.8e-05 Score=65.60 Aligned_cols=77 Identities=19% Similarity=0.287 Sum_probs=59.0
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCC--ce
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG--RP 446 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~G--RP 446 (535)
.++.|++.||.+..+..||.+++.. ++.-..++++ +...+....|.|||.|.+.+.|+.|+..|+...+ +| ||
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~~~ 162 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGK-YGSIVQKNIL-RDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP---EGGSQP 162 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTS-SSCEEEEEEE-ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC---TTCSSC
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhc-CCcEEEEEEE-EcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe---cCCCeE
Confidence 4678999999999999888887754 3333344443 3333455678999999999999999999999865 66 99
Q ss_pred eeec
Q 009405 447 LLGS 450 (535)
Q Consensus 447 L~~S 450 (535)
|..+
T Consensus 163 l~V~ 166 (168)
T 1b7f_A 163 LSVR 166 (168)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 8754
No 168
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.84 E-value=1.7e-05 Score=65.81 Aligned_cols=78 Identities=15% Similarity=0.149 Sum_probs=58.2
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhc--cceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCC
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKE--NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 444 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke--~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~G 444 (535)
...++.|++.||.+..|..||.+++...... -..++|+.... ....|.|||.|.+.+.|+.||. |+..-| +|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~--g~~~G~afV~F~~~~~a~~Al~-~~g~~~---~g 87 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE--GRQSGEAFVELESEDDVKLALK-KDRESM---GH 87 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS--SCEEEEEEEEBSSHHHHHHHGG-GTTEEE---TT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC--CCCCeEEEEEECCHHHHHHHHh-cCCCeE---CC
Confidence 3567899999999999999988877652220 22344443222 5667899999999999999999 877544 99
Q ss_pred ceeeec
Q 009405 445 RPLLGS 450 (535)
Q Consensus 445 RPL~~S 450 (535)
|+|...
T Consensus 88 r~i~V~ 93 (118)
T 2db1_A 88 RYIEVF 93 (118)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 998743
No 169
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.83 E-value=3e-05 Score=66.05 Aligned_cols=86 Identities=9% Similarity=0.058 Sum_probs=61.3
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+.|++.||.+..|..||.+++.. |+.-..++++.. .-+..+.|.|||-|.+.+.|+.||.. +...| +||+|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~---~G~~i 175 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQ-YGKIEVIEIMTD-RGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTV---NGHNC 175 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTT-TSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHC-SCCEE---TTEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEeec-CCCCCccceEEEEECCHHHHHHHHHh-CCcEE---CCEEE
Confidence 34588999999999999998888763 444445555433 23355678999999999999999987 54433 99999
Q ss_pred eeccCCcCCCCC
Q 009405 448 LGSIGTPCFTGK 459 (535)
Q Consensus 448 ~~S~g~~~~p~k 459 (535)
..+.+.+....+
T Consensus 176 ~v~~a~~k~~~~ 187 (196)
T 1l3k_A 176 EVRKALSKQEMA 187 (196)
T ss_dssp EEEECC------
T ss_pred EEEecCChhHhc
Confidence 988887765544
No 170
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.82 E-value=1.5e-05 Score=69.37 Aligned_cols=79 Identities=14% Similarity=0.131 Sum_probs=60.2
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhc--cceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCc
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKE--NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 445 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke--~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GR 445 (535)
..++.|++.||.+..|..||.+++...... --.++++- ... ....|.|||.|.+.+.|+.||. |+..-| +||
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~-d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l---~gr 115 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIY-TRE-GRQSGEAFVELGSEDDVKMALK-KDRESM---GHR 115 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEE-CSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES---SSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEE-CCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE---CCE
Confidence 467899999999999999998887663221 12344443 222 6668999999999999999999 988755 999
Q ss_pred eeeeccC
Q 009405 446 PLLGSIG 452 (535)
Q Consensus 446 PL~~S~g 452 (535)
+|.-...
T Consensus 116 ~i~V~~a 122 (136)
T 2hgl_A 116 YIEVFKS 122 (136)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9985544
No 171
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.82 E-value=2.9e-05 Score=69.16 Aligned_cols=78 Identities=26% Similarity=0.241 Sum_probs=61.8
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
..+-|++.||.++.|..||.+++.. |++-..++++... +..-|.|||.|.+.+.|+.||..|+..-| +||||.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~d~---~~~~g~~fV~f~~~~~a~~Ai~~lng~~~---~g~~i~ 174 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNGMLL---NDRKVF 174 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEET---TEEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred ccccceECCcccccHHHHHHHHHhh-cCCeEEEEeeccC---CCCceEEEEEeCCHHHHHHHHHHhCCCEE---CCEEEE
Confidence 3456899999999999999888764 4555566665432 33478999999999999999999998755 999998
Q ss_pred eccCC
Q 009405 449 GSIGT 453 (535)
Q Consensus 449 ~S~g~ 453 (535)
-..+.
T Consensus 175 V~~a~ 179 (213)
T 4f02_A 175 VGRFK 179 (213)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 76654
No 172
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=5.5e-05 Score=59.43 Aligned_cols=77 Identities=13% Similarity=0.006 Sum_probs=57.0
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCc-eeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFG-QSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G-~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
+-+-||+.||.+..|..||.+++.... +-... ++ ++.+| .|||.|.+.++|+.||. |+...| +||+|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v-~~------~~~~g~~afV~f~~~~~a~~ai~-l~g~~~---~g~~l 74 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFG-PVASV-VM------DKDKGVFAIVEMGDVGAREAVLS-QSQHSL---GGHRL 74 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTS-CEEEE-EE------CSSSCCEEEEEESSHHHHHHHHT-CSCCEE---TTEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC-CeEEE-EE------cCCCCcEEEEEECCHHHHHHHHh-cCCeEE---CCEEE
Confidence 346799999999999999887775422 11111 22 33333 89999999999999999 998866 89999
Q ss_pred eeccCCcCCC
Q 009405 448 LGSIGTPCFT 457 (535)
Q Consensus 448 ~~S~g~~~~p 457 (535)
....+.+..+
T Consensus 75 ~V~~a~~~~~ 84 (94)
T 2e5g_A 75 RVRPREQKEF 84 (94)
T ss_dssp CCBCSCCSCC
T ss_pred EEEECCcCCC
Confidence 9877654443
No 173
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.81 E-value=4e-05 Score=65.24 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=68.0
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
.+..+-||+.||.+..|..||.+++.. |++-..++++.. ..+....|.|||.|.+.+.|+.||.. +..-+ +||+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~---~g~~ 83 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVMRD-PNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV---DGRV 83 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE---TTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEEc-CCCCCccceEEEEeCCHHHHHHHHhc-CCCEE---CCEE
Confidence 356789999999999999999988764 444445555543 33355678999999999999999977 44433 8999
Q ss_pred eeeccCCcCCCCC--------CCccccceehh
Q 009405 447 LLGSIGTPCFTGK--------QSKFVGHLALD 470 (535)
Q Consensus 447 L~~S~g~~~~p~k--------~s~f~GHl~i~ 470 (535)
|......+..+.. ..-|+|.|.-+
T Consensus 84 l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~ 115 (196)
T 1l3k_A 84 VEPKRAVSREDSQRPGAHLTVKKIFVGGIKED 115 (196)
T ss_dssp CEEEECCC-----------CCSEEEEECCTTT
T ss_pred eeeecccCcccccccccCCCcceEEEeCCCCC
Confidence 9877665433221 33566666544
No 174
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.79 E-value=5.3e-05 Score=76.75 Aligned_cols=83 Identities=8% Similarity=0.060 Sum_probs=67.3
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+.|||.||.+..|..+|.+++.. |+.-..++|+. ...+.-..|.|||.|.+.++|+.||..|+...| +|++|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~-~G~I~~v~i~~-d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i---~gr~i 174 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVY-SKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI---DGRRV 174 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEeec-cCCCCCccceEEEeeccHHHHHHHHHHcCCCEE---CCEEE
Confidence 34578999999999999999999876 55555565543 333456689999999999999999999999866 99999
Q ss_pred eeccCCcC
Q 009405 448 LGSIGTPC 455 (535)
Q Consensus 448 ~~S~g~~~ 455 (535)
....+.+.
T Consensus 175 ~V~~a~~~ 182 (437)
T 3pgw_S 175 LVDVERGR 182 (437)
T ss_pred EEEEeCCC
Confidence 98877654
No 175
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.79 E-value=7.3e-05 Score=67.27 Aligned_cols=78 Identities=17% Similarity=0.240 Sum_probs=63.4
Q ss_pred hcccEEEEecCCC-CCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 368 EHGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 368 E~GrlVlLqNLDP-s~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
..++.||+.||.+ ..+..||.+++.. |++-..++++... .|.|||.|.+.+.|+.||..|+...+ +||+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~-~G~i~~v~i~~~~------~g~afV~F~~~~~A~~Ai~~l~g~~~---~g~~ 101 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL---HGKP 101 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHH-HTCEEEEEECCTT------SCCEEEEESCHHHHHHHHHHHTTCBC---SSSB
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEEEECC------CCEEEEEECCHHHHHHHHHHhCCCeE---CCeE
Confidence 4678999999999 9999999998865 4444555665432 68999999999999999999999766 8999
Q ss_pred eeeccCCcC
Q 009405 447 LLGSIGTPC 455 (535)
Q Consensus 447 L~~S~g~~~ 455 (535)
|......+.
T Consensus 102 l~v~~a~~~ 110 (229)
T 2adc_A 102 IRITLSKHQ 110 (229)
T ss_dssp CEEECCSCC
T ss_pred EEEEEecCc
Confidence 998766543
No 176
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.78 E-value=2.3e-05 Score=72.59 Aligned_cols=81 Identities=12% Similarity=0.041 Sum_probs=63.8
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhh--ccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFK--ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afk--e~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
..+-|||.||.+..|..||.+++.. |. +-..++++- ...+...-|.|||.|.+.+.|+.||..|+...| +||+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~-d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~---~Gr~ 141 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFE-NRANGQSKGFALVGVGSEASSKKLMDLLPKREL---HGQN 141 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEE-CTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB---TTBC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH-HCCcceEEEEEEe-cCCCCccceEEEEEECCHHHHHHHHHHcCCCeE---CCEE
Confidence 5778999999999999999998854 44 555566553 333455668899999999999999999999866 8999
Q ss_pred eeeccCCc
Q 009405 447 LLGSIGTP 454 (535)
Q Consensus 447 L~~S~g~~ 454 (535)
|....+.+
T Consensus 142 l~V~~a~~ 149 (229)
T 3q2s_C 142 PVVTPVNK 149 (229)
T ss_dssp CEEEECCH
T ss_pred eEEEECCC
Confidence 99776543
No 177
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.98 E-value=3.2e-06 Score=68.88 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=64.9
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhc-cce------eeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCS------AKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL 440 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke-~C~------AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ 440 (535)
...+-||+.||.+..+..||.+++.....- .|. ++++ ....+....|.|||.|.+.++|+.||..|+..-+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLY-TDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF- 82 (116)
Confidence 356789999999999999999888764322 221 3333 3333355678999999999999999999998755
Q ss_pred eeCCceeeeccCCcCCC
Q 009405 441 LSNGRPLLGSIGTPCFT 457 (535)
Q Consensus 441 ls~GRPL~~S~g~~~~p 457 (535)
+||+|....+.+...
T Consensus 83 --~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 --SGNPIKVSFATRRAD 97 (116)
Confidence 899999887766544
No 178
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.77 E-value=1e-05 Score=64.17 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=59.7
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
....+-||+.||.+..+..||.+++.. |+.-..++++... +....|.|||.|.+.+.|+.||. +..-| +||+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~Ai~--~~~~~---~g~~ 77 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFAR-YGSVKEVKIITDR--TGVSKGYGFVSFYNDVDVQKIVE--SQINF---HGKK 77 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECT--TSCEEEEEEEEESSCCCHHHHTT--CCCEE---TTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECC--CCCccceEEEEECCHHHHHHHHh--CCCeE---CCEE
Confidence 445688999999999999999888754 4444456665543 56677999999999999999999 43322 8888
Q ss_pred eeeccCC
Q 009405 447 LLGSIGT 453 (535)
Q Consensus 447 L~~S~g~ 453 (535)
|......
T Consensus 78 l~v~~a~ 84 (102)
T 2xs2_A 78 LKLGPAI 84 (102)
T ss_dssp CEEEEEE
T ss_pred EEEEECC
Confidence 8754444
No 179
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=2.7e-05 Score=63.76 Aligned_cols=76 Identities=14% Similarity=0.120 Sum_probs=55.1
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCC---CCCCceeEEEeechHHHHHHHhhhccceeeeeCC
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFA---SPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 444 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~s---spn~G~AfvIFkTkeAAdsai~KL~egCL~ls~G 444 (535)
...+-||+.||.+..|..||.+++.+-..-. .+++ ....+ ....|.|||.|.+.+.|+.||..|++ | +|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--~~~~-~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~---~G 77 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV--VDWP-HKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--E---DG 77 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC--EECT-TSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--E---TT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE--EEEe-ecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--c---CC
Confidence 3457799999999999999888776532222 3333 32222 46789999999999999999999854 2 77
Q ss_pred ceeeecc
Q 009405 445 RPLLGSI 451 (535)
Q Consensus 445 RPL~~S~ 451 (535)
+.|++..
T Consensus 78 ~~~~~~~ 84 (114)
T 2dnl_A 78 KLYLCVS 84 (114)
T ss_dssp EEEEEEC
T ss_pred cEEEecc
Confidence 7776544
No 180
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.74 E-value=9e-05 Score=61.35 Aligned_cols=80 Identities=20% Similarity=0.182 Sum_probs=54.8
Q ss_pred cEEEEecC-CCCCCch-----hHHHHHHHHhhc---cceeeeccCCCC--CCCCCceeEEEeechHHHHHHHhhhcccee
Q 009405 371 TLVVLENL-DPSYTST-----VVEDLVWHAFKE---NCSAKMIPRVAF--ASPYFGQSFVIFKTREVAELVVTKLEEGCL 439 (535)
Q Consensus 371 rlVlLqNL-DPs~tS~-----eVEDli~~afke---~C~AKmI~~~~~--sspn~G~AfvIFkTkeAAdsai~KL~egCL 439 (535)
++|+|.|+ +|.--.+ |+++=|+..|.. -..+ .|+++.- ..+..|.|||.|.+.+.|..||..||..-+
T Consensus 6 ~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v-~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 6 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSI-EIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp SEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEE-ECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred eEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEE-EEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 68999997 4432222 244445555543 2223 3444432 235679999999999999999999999976
Q ss_pred eeeCCceeeeccCCc
Q 009405 440 LLSNGRPLLGSIGTP 454 (535)
Q Consensus 440 ~ls~GRPL~~S~g~~ 454 (535)
+||+|.++...+
T Consensus 85 ---~GR~i~v~~~~~ 96 (105)
T 3v4m_A 85 ---ANRVVVTKYCDP 96 (105)
T ss_dssp ---TTEECEEEEECH
T ss_pred ---CCCEEEEEEeCH
Confidence 999999887543
No 181
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=97.74 E-value=5.7e-05 Score=62.77 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=67.8
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 448 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~ 448 (535)
..+-|++.||.+..|..||.+++.. |++-..++++ +...+..+.|.|||.|.+.+.|+.||..+ ..+ +||+|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~-~~~~~g~~~g~afV~f~~~~~a~~A~~~~----~~~-~g~~i~ 74 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGK-YGTVTDLKIM-KDPATGRSRGFGFLSFEKPSSVDEVVKTQ----HIL-DGKVID 74 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTT-TCCEEEEECC-CCTTTSSCCSCEEEEESSTHHHHHHHHSC----CEE-TTEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEE-ECCCCCCccceEEEEEccHHHHHHHHhcc----ccc-CCeEcc
Confidence 5688999999999999999888765 3333344443 34445677899999999999999999952 233 899998
Q ss_pred eccCCcCCCC--CCCccccceehh
Q 009405 449 GSIGTPCFTG--KQSKFVGHLALD 470 (535)
Q Consensus 449 ~S~g~~~~p~--k~s~f~GHl~i~ 470 (535)
.....+.... ...-|+|.|.-+
T Consensus 75 v~~~~~~~~~~~~~~l~V~nlp~~ 98 (167)
T 2cjk_A 75 PKRAIPRDEQDKTGKIFVGGIGPD 98 (167)
T ss_dssp CEECCCHHHHHHCEEEEEEEECTT
T ss_pred cccccchhhccCCCeEEECCCCCC
Confidence 7665543322 234677776554
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.73 E-value=6.5e-05 Score=68.49 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=61.6
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++.|+|.||.+..+..||.+++.. |..-..+++++.. .|.|||.|.+.+.|+.||..|+...+ .+||+|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~i~~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~--~~g~~l 275 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQ-FPGFKEVRLVPGR------HDIAFVEFDNEVQAGAARDALQGFKI--TQNNAM 275 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHh-cCCeEEEEEecCC------CcEEEEEeCCHHHHHHHHHHcCCcEe--CCCCEE
Confidence 34789999999999999999998865 4555566766322 48999999999999999999999766 249999
Q ss_pred eeccC
Q 009405 448 LGSIG 452 (535)
Q Consensus 448 ~~S~g 452 (535)
..+.+
T Consensus 276 ~v~~a 280 (282)
T 3pgw_A 276 KISFA 280 (282)
T ss_pred EEEEe
Confidence 87654
No 183
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.73 E-value=3.7e-05 Score=66.51 Aligned_cols=75 Identities=19% Similarity=0.136 Sum_probs=55.4
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccc--eeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCc
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENC--SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 445 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C--~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GR 445 (535)
+..+.|++.||.+..|..||.+++... .-. .++++ ...- ....|.|||.|.+.+.|+.||... ...| +||
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~--~i~~~~v~i~-~d~~-GrsrGfaFV~F~~~e~A~~Al~~~-~~~l---~gR 111 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL--EIVPNGITLP-VDPE-GKITGEAFVQFASQELAEKALGKH-KERI---GHR 111 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS--CEEEEEEECC-CCSS-SSSCSEEEEEESSTTHHHHHHTTT-TCCB---TTB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC--CceeeEEEEE-ECCC-CCCceEEEEEECCHHHHHHHHHHC-CCEE---CCE
Confidence 346789999999999999988877653 222 33333 3333 566899999999999999999874 3433 899
Q ss_pred eeeec
Q 009405 446 PLLGS 450 (535)
Q Consensus 446 PL~~S 450 (535)
+|.-.
T Consensus 112 ~I~V~ 116 (126)
T 2hgm_A 112 YIEVF 116 (126)
T ss_dssp CCCCE
T ss_pred EEEEE
Confidence 98643
No 184
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.71 E-value=5.6e-05 Score=69.45 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=61.7
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
....+.||+.||.+..|..||.+++.. |+.-..++++ .+.|.|||.|.+.+.|+.||..|+...+ +|||
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~-------~~kg~afV~f~~~~~A~~A~~~l~g~~i---~g~~ 87 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFER-YGEPSEVFIN-------RDRGFGFIRLESRTLAEIAKAELDGTIL---KSRP 87 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGG-GCCCSEEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCEE---TTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEe-------CCCcEEEEEECCHHHHHHHHHHcCCcEE---CCce
Confidence 456789999999999999999988743 5555555553 2469999999999999999999998866 8999
Q ss_pred eeeccCC
Q 009405 447 LLGSIGT 453 (535)
Q Consensus 447 L~~S~g~ 453 (535)
|......
T Consensus 88 l~v~~a~ 94 (261)
T 3sde_A 88 LRIRFAT 94 (261)
T ss_dssp CEEEECC
T ss_pred eEeeecc
Confidence 8766543
No 185
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.70 E-value=2.4e-05 Score=68.45 Aligned_cols=83 Identities=14% Similarity=0.064 Sum_probs=61.4
Q ss_pred hhhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCC
Q 009405 365 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 444 (535)
Q Consensus 365 ~A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~G 444 (535)
.+.+.++.|++.||.+..|..||.+++.... -..++++-.. ..-..|.|||.|.|.+.|+.|| +++...| +|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G--i~~v~i~~d~--~g~srGfaFV~F~~~e~A~~Al-~~~g~~l---~g 112 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN--PVRVHIEIGP--DGRVTGEADVEFATHEEAVAAM-SKDRANM---QH 112 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC--CSEEECCCSS--SSCSSCCCEEECSHHHHHHHHT-TCCSCSS---SS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEECC--CCCCceEEEEEeCCHHHHHHHH-hhCCCEE---CC
Confidence 3456788999999999999999988887632 2355555432 2666899999999999999999 8887655 99
Q ss_pred ceeeeccCCcC
Q 009405 445 RPLLGSIGTPC 455 (535)
Q Consensus 445 RPL~~S~g~~~ 455 (535)
|+|.-....+.
T Consensus 113 R~i~V~~a~~~ 123 (139)
T 2hgn_A 113 RYIELFLNSTT 123 (139)
T ss_dssp CCCCCEECCCS
T ss_pred EEEEEEECCCC
Confidence 99876555443
No 186
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=97.67 E-value=5.2e-05 Score=64.65 Aligned_cols=82 Identities=18% Similarity=0.202 Sum_probs=57.5
Q ss_pred cccEEEEecC-CCCCCchhHHHHHHHHhhccc---eeeeccCCCCC----CCCCceeEEEeechHHHHHHHhhhccceee
Q 009405 369 HGTLVVLENL-DPSYTSTVVEDLVWHAFKENC---SAKMIPRVAFA----SPYFGQSFVIFKTREVAELVVTKLEEGCLL 440 (535)
Q Consensus 369 ~GrlVlLqNL-DPs~tS~eVEDli~~afke~C---~AKmI~~~~~s----spn~G~AfvIFkTkeAAdsai~KL~egCL~ 440 (535)
..++|+|.|+ +|.=-.+|+++=|+..|..-- .++ |+++..+ .+..|.|||.|.+.+.|..||..|+..-+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~-I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f- 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVI-IYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF- 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEE-EEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEE-EeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE-
Confidence 5789999998 332112456766777665422 233 3333221 22348999999999999999999999976
Q ss_pred eeCCceeeeccCCc
Q 009405 441 LSNGRPLLGSIGTP 454 (535)
Q Consensus 441 ls~GRPL~~S~g~~ 454 (535)
+||+|.++....
T Consensus 97 --~GR~i~v~~~~~ 108 (118)
T 3ue2_A 97 --AGRKVVAEVYDQ 108 (118)
T ss_dssp --TTEECEEEEECH
T ss_pred --CCcEEEEEEcCh
Confidence 999999887644
No 187
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.67 E-value=0.00012 Score=56.65 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=59.1
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
...+-||+.||.+..|.+||.+++.. |++-..++++.. .-|.|||.|.+.+.|+.|+ ..-+. -+|++|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~------~~g~afV~f~~~~~a~~~~----~~~~~-~~g~~l 70 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQ-YGDVMDVFIPKP------FRAFAFVTFADDQIAQSLC----GEDLI-IKGISV 70 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTT-TSCCCEEECCSS------CCSCCEEECSCHHHHHHTT----TCEEE-ETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEEecC------CCCEEEEEECCHHHHHHHh----cCCce-eCCEEE
Confidence 45688999999999999998877743 444445555532 6799999999999998653 33333 399999
Q ss_pred eeccCCcCCCCC
Q 009405 448 LGSIGTPCFTGK 459 (535)
Q Consensus 448 ~~S~g~~~~p~k 459 (535)
....+.+.....
T Consensus 71 ~v~~a~~~~~~~ 82 (88)
T 1wf0_A 71 HISNAEPKHNSN 82 (88)
T ss_dssp EEECCCCCCCCC
T ss_pred EEEecCCCCCCC
Confidence 988887765544
No 188
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.66 E-value=9.1e-05 Score=62.28 Aligned_cols=76 Identities=18% Similarity=0.160 Sum_probs=59.3
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCcee
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 447 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL 447 (535)
..++-||+.|| ..|..||.+++.. |++-..++|+ ..-|.|||.|.+.+.|+.||..|+..-| +||+|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~-~G~I~~v~i~-------~~kg~aFV~f~~~~~A~~Ai~~lng~~~---~g~~l 103 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD-------PPRNCAFVTYEKMESADQAVAELNGTQV---ESVQL 103 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHST-TCCCSCEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCBC---SSCBC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHc-cCCEEEEEEe-------CCCCEEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence 46889999996 4788887777644 3333444553 5679999999999999999999999855 89999
Q ss_pred eeccCCcCC
Q 009405 448 LGSIGTPCF 456 (535)
Q Consensus 448 ~~S~g~~~~ 456 (535)
....+.+..
T Consensus 104 ~V~~a~~~~ 112 (121)
T 2bz2_A 104 KVNIARKQP 112 (121)
T ss_dssp EEEECCSSC
T ss_pred EEEEeCCCC
Confidence 988876653
No 189
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.66 E-value=9e-05 Score=60.95 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=56.9
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
.++-|++.||.+..+..||.+++.. ++.-..++++.. ..++.+.|.|||-|.+.+.|..|+..|+..-+ +||.
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 159 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQ-YGRIITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP---SGAT 159 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC---TTCS
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHh-cCCEeEEEEEec-CCCCCccceEEEEeCCHHHHHHHHHHhcCCcc---CCCc
Confidence 4577999999999999998887764 344445555433 33455678999999999999999999999865 7764
No 190
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.64 E-value=0.00013 Score=66.12 Aligned_cols=68 Identities=10% Similarity=-0.028 Sum_probs=56.3
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhc-cceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhcccee
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 439 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke-~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL 439 (535)
-++.|++.||.++.|.+|+.+++.....- .+.+++++.. +-..|.|||-|.+.+.|..||..|+..-|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~---~~~~g~gfV~f~~~~~A~~Ai~~lng~~~ 190 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK---SERSSSGLLEWDSKSDALETLGFLNHYQM 190 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC---SSSSEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC---CCCceEEEEEeCCHHHHHHHHHHhCCCCc
Confidence 36789999999999999999999874432 2788887764 22349999999999999999999998866
No 191
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.62 E-value=9.6e-05 Score=65.80 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=70.5
Q ss_pred ccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeee
Q 009405 370 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 449 (535)
Q Consensus 370 GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~ 449 (535)
.+-||+.||.++.|..||.+++.. |++-..++++ +...+..+.|.|||.|.+.+.|+.||..++...+ .||++..
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~-~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~---~g~~i~~ 89 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSP-AGPILSIRVC-RDMITRRSLGYAYVNFQQPADAERALDTMNFDVI---KGKPVRI 89 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEE-ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHh-hCCEEEEEEe-cccCCCCccccccceeCCHHHHHHHHHHhhhhhc---CCccccc
Confidence 467999999999999999888765 3444455554 3444567789999999999999999999998866 8999876
Q ss_pred ccCCcCCC----CCCCccccceehh
Q 009405 450 SIGTPCFT----GKQSKFVGHLALD 470 (535)
Q Consensus 450 S~g~~~~p----~k~s~f~GHl~i~ 470 (535)
........ .....|+|+|.-+
T Consensus 90 ~~~~~~~~~~~~~~~~l~v~nl~~~ 114 (213)
T 4f02_A 90 MWSQRDPSLRKSGVGNIFIKNLDKS 114 (213)
T ss_dssp EECCCCTHHHHHCTTEEEEESCCTT
T ss_pred ccccccccccccccccceECCcccc
Confidence 65543322 1234567766543
No 192
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.54 E-value=9.8e-05 Score=63.55 Aligned_cols=81 Identities=14% Similarity=0.000 Sum_probs=61.3
Q ss_pred hcccEEEE--ecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhcccee--eeeC
Q 009405 368 EHGTLVVL--ENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL--LLSN 443 (535)
Q Consensus 368 E~GrlVlL--qNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL--~ls~ 443 (535)
+-.+.||+ .||.+..+..|+++++-+-. +--.+.|++ .-|.|||.|.+.+.|+.||..|+..=| .+..
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG-~v~~v~i~~-------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCG-LVDALLMPP-------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHS-CEEEEECCT-------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcC-CeEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 34678999 55999999999999887643 333344432 258999999999999999999999733 2446
Q ss_pred CceeeeccCCcCC
Q 009405 444 GRPLLGSIGTPCF 456 (535)
Q Consensus 444 GRPL~~S~g~~~~ 456 (535)
||||+-.......
T Consensus 95 g~~l~v~~a~~~p 107 (114)
T 2cq2_A 95 KITLYLNFVEKVQ 107 (114)
T ss_dssp EEECEEEEESCCC
T ss_pred CcEEEEEecccCc
Confidence 9999988765443
No 193
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.45 E-value=0.00012 Score=62.67 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=56.8
Q ss_pred hhcccEEEEecCCCCCCchhHHHHHHHHhh---ccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeC
Q 009405 367 HEHGTLVVLENLDPSYTSTVVEDLVWHAFK---ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 443 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~tS~eVEDli~~afk---e~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~ 443 (535)
-+.++.|++.||.+..|..||.+++..... .--.++|+.. .+....|.|||.|.+.+.|+.||.+ +...| +
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d--~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l---~ 93 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY--PDGRPTGDAFVLFACEEYAQNALRK-HKDLL---G 93 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC--TTSCEEEEEEECCSSHHHHHHHHTT-TTEES---S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC--CCCCEeeEEEEEECCHHHHHHHHHh-CCCee---C
Confidence 356789999999999999998887765321 0112444433 2456679999999999999999997 66544 8
Q ss_pred Cceee
Q 009405 444 GRPLL 448 (535)
Q Consensus 444 GRPL~ 448 (535)
||+|.
T Consensus 94 gR~i~ 98 (123)
T 2dha_A 94 KRYIE 98 (123)
T ss_dssp SCEEC
T ss_pred CeEEE
Confidence 99876
No 194
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.40 E-value=0.00036 Score=60.39 Aligned_cols=72 Identities=17% Similarity=0.102 Sum_probs=55.0
Q ss_pred EEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCc-eeEEEeechHHHHHHHhhhccceeeeeCC--ceeee
Q 009405 373 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFG-QSFVIFKTREVAELVVTKLEEGCLLLSNG--RPLLG 449 (535)
Q Consensus 373 VlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G-~AfvIFkTkeAAdsai~KL~egCL~ls~G--RPL~~ 449 (535)
||+.||.+..|.+++.+++-. |++-..++|+.+ .| +|||.|.+.+.|+.||..|+..-| +| |+|.-
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs~-yG~V~~v~i~~~-------~Gf~aFVef~~~~~A~~A~~~LnG~~i---~g~~~~l~V 96 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCNP-VGKVQRIVIFKR-------NGIQAMVEFESVLCAQKAKAALNGADI---YAGCCTLKI 96 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHTT-TSCEEEEEEEES-------SSEEEEEEESSHHHHHHHHHHHTTCCC---BTTBSEEEE
T ss_pred EEEcCcCCCCCHHHHHHHHHh-cCCEEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCEe---cCCCeEEEE
Confidence 578999999998887776653 444555666543 28 699999999999999999999876 44 68876
Q ss_pred ccCCcC
Q 009405 450 SIGTPC 455 (535)
Q Consensus 450 S~g~~~ 455 (535)
..+.+.
T Consensus 97 ~~Ak~~ 102 (124)
T 2e5i_A 97 EYARPT 102 (124)
T ss_dssp ECCSCS
T ss_pred EEecCC
Confidence 665443
No 195
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.38 E-value=0.00042 Score=54.94 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=56.1
Q ss_pred HhhhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeC
Q 009405 364 RVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 443 (535)
Q Consensus 364 ~~A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~ 443 (535)
..+....+-||+.||.+..|..||.+++-+ |++-..++++.. .-|.|||.|.+.++|+. |+..-+ .-+
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~-~G~i~~v~i~~~------srGfaFV~F~~~~~A~~----~~~~~~-~~~ 72 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQ-YGEVVDVFIPKP------FRAFAFVTFADDKVAQS----LCGEDL-IIK 72 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCSS------CCSEEEEEESCHHHHHH----HTTCEE-EET
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEeeC------CCCEEEEEECCHHHHHH----HcCCCc-ccC
Confidence 456677889999999999999999988764 455455666542 56999999999999983 454433 348
Q ss_pred CceeeeccCCcCC
Q 009405 444 GRPLLGSIGTPCF 456 (535)
Q Consensus 444 GRPL~~S~g~~~~ 456 (535)
||+|....+.|..
T Consensus 73 g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 73 GISVHISNAEPKH 85 (89)
T ss_dssp TEEEEEEECC---
T ss_pred CEEEEEEEcCCCC
Confidence 9999988876543
No 196
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=97.34 E-value=0.00028 Score=63.63 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=60.3
Q ss_pred hhhcccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCc
Q 009405 366 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 445 (535)
Q Consensus 366 A~E~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GR 445 (535)
.....+.||+.||.+..|..+|++++-+ |+.-..++|+... +....|.|||.|.+.++|+.||..++. .+ +||
T Consensus 105 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i~~~~--~~~~kG~aFVeF~~~e~A~~A~~~~~~---~~-~Gr 177 (193)
T 2voo_A 105 NDVKNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRTL--HKAFKGSIFVVFDSIESAKKFVETPGQ---KY-KET 177 (193)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHTT-SCCEEEEEEEECT--TCCEEEEEEEEESSHHHHHHHHHCTTC---EE-TTE
T ss_pred hccccCEEEecCCCCcCCHHHHHHHHhc-CCCEEEEEEEECC--CCCcccEEEEEECCHHHHHHHHHhCCC---eE-CCE
Confidence 3456788999999999999988887764 4444455555432 255679999999999999999987753 33 999
Q ss_pred eeeeccC
Q 009405 446 PLLGSIG 452 (535)
Q Consensus 446 PL~~S~g 452 (535)
||.....
T Consensus 178 ~l~V~~~ 184 (193)
T 2voo_A 178 DLLILFK 184 (193)
T ss_dssp ECEEEET
T ss_pred EEEEEEh
Confidence 9986543
No 197
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.28 E-value=0.00066 Score=57.63 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=52.0
Q ss_pred ccEEEEecC-CCCC-----CchhHHHHHHHHhhcc---ceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceee
Q 009405 370 GTLVVLENL-DPSY-----TSTVVEDLVWHAFKEN---CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL 440 (535)
Q Consensus 370 GrlVlLqNL-DPs~-----tS~eVEDli~~afke~---C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ 440 (535)
-++|+|.|+ +|.- --.||++=|+..|..- ..++ |++. ..-|.|||.|.+.+.|+.||..|++.-+
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~-i~~~----~~~G~~fV~f~~~e~A~~Ai~~lnG~~f- 80 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIY-VDKN----SAQGNVYVKCPSIAAAIAAVNALHGRWF- 80 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEE-ECTT----CTTCCEEEECSSHHHHHHHHHHHTTCEE-
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEE-EecC----CCcEEEEEEECCHHHHHHHHHHhCCCEE-
Confidence 578899997 3321 1244555556555432 1222 2332 2379999999999999999999999977
Q ss_pred eeCCceeeeccC
Q 009405 441 LSNGRPLLGSIG 452 (535)
Q Consensus 441 ls~GRPL~~S~g 452 (535)
+||+|.++..
T Consensus 81 --~GR~i~v~~~ 90 (114)
T 3s6e_A 81 --AGKMITAAYV 90 (114)
T ss_dssp --TTEECEEEEE
T ss_pred --CCEEEEEEEE
Confidence 9999998764
No 198
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.27 E-value=0.00067 Score=61.99 Aligned_cols=78 Identities=13% Similarity=0.054 Sum_probs=59.0
Q ss_pred cEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeeec
Q 009405 371 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 450 (535)
Q Consensus 371 rlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~S 450 (535)
..||+.||.+..|.+++.+++-. |++--.++++.. ..-|.|||.|.+.+.|+.|+..|+...| ..+||+|.-.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~-fG~V~~V~i~~k-----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i-~g~g~~L~V~ 119 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNI-YNACCTLRID 119 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHH-HSCEEEEEEEES-----SSCEEEEEEESCHHHHHHHHHHSTTBCS-SSSCSCEEEE
T ss_pred EEEEEeCcCCCCCHHHHHHHHHh-cCCEEEEEEEeC-----CCCCEEEEEECCHHHHHHHHHHhCCCEe-cCCCcEEEEE
Confidence 45789999999999999888754 444444555432 2357999999999999999999999876 2235998876
Q ss_pred cCCcC
Q 009405 451 IGTPC 455 (535)
Q Consensus 451 ~g~~~ 455 (535)
...+.
T Consensus 120 ~Ak~~ 124 (164)
T 1sjr_A 120 FSKLT 124 (164)
T ss_dssp ECSSS
T ss_pred EecCC
Confidence 66544
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=97.27 E-value=0.00064 Score=56.00 Aligned_cols=38 Identities=29% Similarity=0.525 Sum_probs=33.7
Q ss_pred CCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeeecc
Q 009405 411 SPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 451 (535)
Q Consensus 411 spn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~S~ 451 (535)
....|.|||.|.+.+.|+.|+..|+...+ +||||.+..
T Consensus 65 ~~~~G~~fV~f~~~~~A~~A~~~lng~~~---~Gr~i~v~~ 102 (104)
T 1jmt_A 65 DHLVGNVYVKFRREEDAEKAVIDLNNRWF---NGQPIHAEL 102 (104)
T ss_dssp SSSEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECCEEE
T ss_pred CCccEEEEEEECCHHHHHHHHHHHCCCEE---CCEEEEEEE
Confidence 34579999999999999999999999977 999998654
No 200
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.92 E-value=0.0008 Score=64.38 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=60.9
Q ss_pred hhcccEEEEecCCCCC-----CchhHHHHHHHHhhc---cceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccce
Q 009405 367 HEHGTLVVLENLDPSY-----TSTVVEDLVWHAFKE---NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGC 438 (535)
Q Consensus 367 ~E~GrlVlLqNLDPs~-----tS~eVEDli~~afke---~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egC 438 (535)
....|-||+.||.+.. .....|+.|+..|.+ --.+++++ +-|.|||.|.+.+.|+.|+..|+..-
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 4468999999999886 223345556665544 45566664 46999999999999999999999987
Q ss_pred eeee---------CCceeeeccCCc
Q 009405 439 LLLS---------NGRPLLGSIGTP 454 (535)
Q Consensus 439 L~ls---------~GRPL~~S~g~~ 454 (535)
|+++ +||+|....+..
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred EeccccccccccCCCCEEEEEEccC
Confidence 7542 799999877753
No 201
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=96.89 E-value=0.0014 Score=57.57 Aligned_cols=77 Identities=13% Similarity=0.039 Sum_probs=55.9
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCC--ce
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG--RP 446 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~G--RP 446 (535)
.=-.||+.||.+..|.+++.+|+-. |++-..++|+.+ +.-++|||.|.+.+.|+.|+..|+...+ .| ++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~-yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i---~g~~~~ 97 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNI---YNACCT 97 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTT-SSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEE---ETTEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhC-cCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCee---cCCCcE
Confidence 3345679999999999988777543 444455566653 2233699999999999999999999877 34 77
Q ss_pred eeeccCCc
Q 009405 447 LLGSIGTP 454 (535)
Q Consensus 447 L~~S~g~~ 454 (535)
|--....+
T Consensus 98 LrI~~ak~ 105 (130)
T 3zzy_A 98 LRIDFSKL 105 (130)
T ss_dssp EEEEECSC
T ss_pred EEEEecCC
Confidence 76555433
No 202
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.52 E-value=0.0021 Score=56.23 Aligned_cols=74 Identities=16% Similarity=0.124 Sum_probs=52.6
Q ss_pred hhhcccEEEEecCCCC-CCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeec-hHHHHHHHhhhccceeeeeC
Q 009405 366 AHEHGTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKT-REVAELVVTKLEEGCLLLSN 443 (535)
Q Consensus 366 A~E~GrlVlLqNLDPs-~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkT-keAAdsai~KL~egCL~ls~ 443 (535)
.+..|.+|++.||.+. .+-.||.+ +|.+--+.+.|.-.. ....|||-|.+ .++|..||.+|+++-+.+ .
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke----~F~~~G~V~~Vd~~~----g~~tgfVrf~~~~~~A~~av~~ln~~~~~i-~ 84 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHI----LFSNHGEIKWIDFVR----GAKEGIILFKEKAKEALGKAKDANNGNLQL-R 84 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHH----HTCSSCCEEEEECCT----TCSEEEEEESSCHHHHHHHHHHTTTSCBCT-T
T ss_pred cccCCeEEEEecCCCCcCCHHHHHH----HHHhcCCEEEEEEec----CCCEEEEEECCChHHHHHHHHHhhcCCcEE-e
Confidence 3568999999999999 77555544 555544554443221 11149999999 799999999999999888 4
Q ss_pred Cceee
Q 009405 444 GRPLL 448 (535)
Q Consensus 444 GRPL~ 448 (535)
|..+.
T Consensus 85 g~~~~ 89 (121)
T 1owx_A 85 NKEVT 89 (121)
T ss_dssp SSSEE
T ss_pred CcEEE
Confidence 44433
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=96.41 E-value=0.0028 Score=63.48 Aligned_cols=82 Identities=15% Similarity=0.049 Sum_probs=60.6
Q ss_pred HHhhhhcccEEEEecC--CCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceee
Q 009405 363 IRVAHEHGTLVVLENL--DPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL 440 (535)
Q Consensus 363 l~~A~E~GrlVlLqNL--DPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ 440 (535)
++...+-.+-+|+.|+ ..+.|.+|+++++-. |++--.++|.+ .-|.|||.|.+.+.|+.||..||..-++
T Consensus 11 v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G~V~~v~~~~-------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPP-------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHT-TSCEEEEECCT-------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred ceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHh-cCCeEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 3344556788999995 556777777776655 34433455543 3599999999999999999999999876
Q ss_pred eeCCc--eeeeccC
Q 009405 441 LSNGR--PLLGSIG 452 (535)
Q Consensus 441 ls~GR--PL~~S~g 452 (535)
-..|| ||+-++.
T Consensus 83 ~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 83 DDLGQKITLYLNFV 96 (345)
T ss_dssp CTTSCEEECEEEEC
T ss_pred cccCCceEEEEEEe
Confidence 55577 8877765
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.36 E-value=0.012 Score=48.96 Aligned_cols=68 Identities=22% Similarity=0.115 Sum_probs=51.6
Q ss_pred CCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeeeccCCcCCCCC
Q 009405 380 PSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGK 459 (535)
Q Consensus 380 Ps~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~S~g~~~~p~k 459 (535)
+.++..||.+++.+ |++-..++|+. ..-|.|||.|.+.+.|+.||..++.- .||||....+.+..+.+
T Consensus 27 ~~~te~~L~~~F~~-~G~V~~v~i~~------~~rGfaFVeF~~~~~A~~Ai~~~~~~-----~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK-YGEVLNLVLSS------KKPGTAVVEFATVKAAELAVQNEVGL-----VDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHT-TSCEEEEEEES------SSSSEEEEEESCHHHHHHHHHTCCBC-----SSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHh-cCCEEEEEEcc------CCCCEEEEEECCHHHHHHHHHhcCCC-----CCCeEEEEEccCCCCCC
Confidence 67788888877754 44555666662 45799999999999999999995542 69999988877665544
No 205
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=95.37 E-value=0.021 Score=51.09 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=56.3
Q ss_pred cccEEEEecC-CCCCCchhHHHHHHHHhhcc---ceeeeccCCCC----CCCCCceeEEEeechHHHHHHHhhhccceee
Q 009405 369 HGTLVVLENL-DPSYTSTVVEDLVWHAFKEN---CSAKMIPRVAF----ASPYFGQSFVIFKTREVAELVVTKLEEGCLL 440 (535)
Q Consensus 369 ~GrlVlLqNL-DPs~tS~eVEDli~~afke~---C~AKmI~~~~~----sspn~G~AfvIFkTkeAAdsai~KL~egCL~ 440 (535)
..+++.|.|+ +|.-..+|.++-++..|.+- -.++++ ++.- ..+..|.+||.|.+.+.|..||..|++.-+
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~-~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~- 200 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIY-QEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF- 200 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEE-EEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS-
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEe-cCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE-
Confidence 4566666665 44444556666666666542 223333 2221 225568999999999999999999999977
Q ss_pred eeCCceeeeccCCc
Q 009405 441 LSNGRPLLGSIGTP 454 (535)
Q Consensus 441 ls~GRPL~~S~g~~ 454 (535)
+||||.++....
T Consensus 201 --~gr~i~~~~~~~ 212 (222)
T 3dxb_A 201 --AGRKVVAEVYDQ 212 (222)
T ss_dssp --SSSBCEEEECCH
T ss_pred --CCeEEEEEEcCH
Confidence 999999887543
No 206
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.022 Score=51.54 Aligned_cols=75 Identities=7% Similarity=-0.006 Sum_probs=56.6
Q ss_pred cEEEEecC----CCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeec-----hH---HHHHHHh--hhcc
Q 009405 371 TLVVLENL----DPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKT-----RE---VAELVVT--KLEE 436 (535)
Q Consensus 371 rlVlLqNL----DPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkT-----ke---AAdsai~--KL~e 436 (535)
+=||+.|| +|+.+..+|.+++- .|++--++++|..+.. ...-|-|||.|.. -+ ||..||. .|++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs-~fGeV~~~~li~Dp~T-g~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFK-KYGEISHFEAFNDPNS-ALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHH-TTSCCSEEEEEECTTT-CCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCC-CceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 45899999 99999999999988 6777666666543222 3335789999994 33 3899999 7888
Q ss_pred ceeeeeCCceeeec
Q 009405 437 GCLLLSNGRPLLGS 450 (535)
Q Consensus 437 gCL~ls~GRPL~~S 450 (535)
.+| +||+|-..
T Consensus 81 ~~I---~Gr~irV~ 91 (136)
T 2j8a_A 81 CFI---MGFKFEVI 91 (136)
T ss_dssp EEE---TTEEEEEE
T ss_pred Cee---cCcEEEEE
Confidence 877 99999854
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.28 E-value=0.17 Score=42.90 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=39.4
Q ss_pred hhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeeeccCCcC
Q 009405 395 FKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPC 455 (535)
Q Consensus 395 fke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~S~g~~~ 455 (535)
|++-..+|+|- +++||.|...++|..||. |+...| +||.|.=...+|-
T Consensus 39 ~G~Vi~vr~~~---------d~~fVtF~d~~sAlaAi~-mnG~~v---~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 39 FGEVILIRFVE---------DKMWVTFLEGSSALNVLS-LNGKEL---LNRTITIALKSPS 86 (91)
T ss_dssp TCCEEEEEECS---------SSEEEEESSHHHHHHGGG-GTTCEE---TTEEEEEEECCCS
T ss_pred CCCeEEEEEec---------CCEEEEECChHHHHHHHh-cCCeEe---CCeEEEEEeCCCC
Confidence 55666777776 559999999999999998 999988 9999986666554
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.29 E-value=0.52 Score=40.36 Aligned_cols=49 Identities=12% Similarity=0.101 Sum_probs=39.4
Q ss_pred HHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCceeee
Q 009405 387 VEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 449 (535)
Q Consensus 387 VEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRPL~~ 449 (535)
|.+.+.+ |++-..+|+|.-. +||.|...+.|..||+ |+...+ +||.|.=
T Consensus 41 L~~~F~~-~G~Vilvr~v~d~---------~fVtF~d~~sAl~AI~-ldG~~v---~Gr~L~V 89 (95)
T 1ufw_A 41 LMQTLGS-YGTIVLVRINQGQ---------MLVTFADSHSALSVLD-VDGMKV---KGRAVKI 89 (95)
T ss_dssp HHHHHHH-HSCCSEEEEETTE---------EEEECSCSHHHHHHHH-GGGSEE---TTEEEEE
T ss_pred HHHHHHH-CCCEEEEEEecCc---------EEEEEcChHHHHHHHh-cCCeee---CCeEEEE
Confidence 3344433 6677778887655 9999999999999998 999999 9999873
No 209
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=80.08 E-value=1.7 Score=37.75 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=45.7
Q ss_pred cEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccce
Q 009405 371 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGC 438 (535)
Q Consensus 371 rlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egC 438 (535)
.|++| ++-|.+.-.||++|+..- + ....+-|. -+.|||+|.+++.|..|+.-|...|
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~f-g-gv~I~Wid--------DTsAlvvf~~~~~a~~al~~i~k~~ 73 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAF-G-NIQISWID--------DTSAFVSLSQPEQVQIAVNTSKYAE 73 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTT-C-SCCCEEEE--------TTEEEEECSCHHHHHHHHHHHHHCC
T ss_pred eEEEE-eCChhhhhHHHHHHhhcc-C-CEEEEEEc--------CCeEEEEecCHHHHHHHHHhcccCC
Confidence 47888 999999999999998753 3 55555554 5689999999999999999884433
No 210
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=79.98 E-value=2.9 Score=35.00 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=47.5
Q ss_pred EEEEecCCCCCCchhHHHHHHHHhhc----cceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhcccee
Q 009405 372 LVVLENLDPSYTSTVVEDLVWHAFKE----NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 439 (535)
Q Consensus 372 lVlLqNLDPs~tS~eVEDli~~afke----~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL 439 (535)
=|+|.+|-|++|-++.++.|-..... =|-+++ +...+-+.+||+.|++.+.+..+...+++.-.
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~----s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDT----SLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCC----SSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCcc----CCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 37899999999999999888653321 122222 22346678999999999999999999987644
No 211
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=74.56 E-value=2.6 Score=36.72 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=46.6
Q ss_pred cEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhcccee
Q 009405 371 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 439 (535)
Q Consensus 371 rlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL 439 (535)
.|++| ++-|.+.-.||+.|...- + ....+-|. -+.|||+|.+++.|..|+.-|...|.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~f-g-gv~I~Wid--------DTsAlvvf~~~~~a~~al~~i~~~~~ 64 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAF-G-NIQISWID--------DTSAFVSLSQPEQVKIAVNTSKYAES 64 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTS-E-EEEEEEEE--------TTEEEEEEEEECHHHHHHHHHTTCSS
T ss_pred eEEEE-eCChhhhhHHHHHHHhcc-C-CEEEEEEc--------CCeEEEEecCHHHHHHHHHhcccCCc
Confidence 47788 999999999999987653 3 55556555 56899999999999999998865543
No 212
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=66.14 E-value=3.7 Score=34.43 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=22.3
Q ss_pred CCceeEEEeechHHHHHHHhhhccc
Q 009405 413 YFGQSFVIFKTREVAELVVTKLEEG 437 (535)
Q Consensus 413 n~G~AfvIFkTkeAAdsai~KL~eg 437 (535)
..|+|||.|.+.+.|+.|+..++..
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhccc
Confidence 5799999999999999999888753
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.14 E-value=13 Score=32.49 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=36.9
Q ss_pred cccEEEEecCCCCCCchhHHHHHHHHhhc---cceeeeccCCCCCCCCCceeEEEeechHHHHHHHhh
Q 009405 369 HGTLVVLENLDPSYTSTVVEDLVWHAFKE---NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTK 433 (535)
Q Consensus 369 ~GrlVlLqNLDPs~tS~eVEDli~~afke---~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~K 433 (535)
-|+-|.++||.|....+ ++.-=|.- +.-..+ ...-+ .| +.|+|.|.-.++|++++.+
T Consensus 7 ~~~~I~V~~lPp~~~~e----~L~LYFEn~rrsGGG~V-~~v~~-~~--~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDE----LLTLYFENRRRSGGGPV-LSWQR-LG--CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCEEEEESCCTTSCHH----HHHHHHHCTTTTCCCCE-EEEEE-ET--TEEEEEESSHHHHHHHHTC
T ss_pred CccEEEEECCCCCCChh----HheEEEeCCCcCCCcee-eEEEE-cC--CcEEEEEcChHHHHHHhcC
Confidence 47889999999977543 33333322 122111 11112 12 8899999999999999998
No 214
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=54.77 E-value=4.8 Score=33.71 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=39.2
Q ss_pred CCCceeEEEeechHHHHHHHhhh-ccceeeeeCCceeeeccCCc------------------CCCCCCCccccceehh
Q 009405 412 PYFGQSFVIFKTREVAELVVTKL-EEGCLLLSNGRPLLGSIGTP------------------CFTGKQSKFVGHLALD 470 (535)
Q Consensus 412 pn~G~AfvIFkTkeAAdsai~KL-~egCL~ls~GRPL~~S~g~~------------------~~p~k~s~f~GHl~i~ 470 (535)
...|++++.|-+.++|+.|+..+ ++.-+ +| |+....... ..+....-|+|+|.-+
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~---~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~ 84 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGV---DG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNN 84 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTC---CC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSC
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCC---CC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCC
Confidence 45799999999999999999999 77655 66 766554432 1223356788887644
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=50.32 E-value=12 Score=32.06 Aligned_cols=63 Identities=16% Similarity=0.273 Sum_probs=45.1
Q ss_pred EEEecCCCCCCchhHHHHHHHHh----hccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhcccee
Q 009405 373 VVLENLDPSYTSTVVEDLVWHAF----KENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 439 (535)
Q Consensus 373 VlLqNLDPs~tS~eVEDli~~af----ke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL 439 (535)
|+|.+|-|++|-++..+.|-... -.-|-++. +.-.+-+.+||+.|++.+....+..+.++--.
T Consensus 12 vVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~----s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 12 VVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADL----SLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp EEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCS----SSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred EEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCcc----CCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 78999999999999887764311 11222221 12345567999999999999999999887644
No 216
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=34.84 E-value=46 Score=34.68 Aligned_cols=55 Identities=16% Similarity=0.255 Sum_probs=41.0
Q ss_pred cEEEEecCCCCCCchhHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhcc
Q 009405 371 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE 436 (535)
Q Consensus 371 rlVlLqNLDPs~tS~eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~e 436 (535)
.++++. +.++....||++++ .+|+ ....+.|.. ..|||+|.+++.|..++.-+..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~f-s~fg-~v~V~widd--------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLF-SAFG-NIQISWIDD--------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHG-GGGC-CCEEEECSS--------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHH-HhcC-CEEEEEEcC--------CeEEEEECCHHHHHHHHHHHHh
Confidence 355676 88888889998876 5665 344443333 5699999999999999998843
No 217
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=34.68 E-value=1e+02 Score=27.55 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=58.8
Q ss_pred hcccEEEEecCCCCCCchhHHHHHHHH--hhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCc
Q 009405 368 EHGTLVVLENLDPSYTSTVVEDLVWHA--FKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 445 (535)
Q Consensus 368 E~GrlVlLqNLDPs~tS~eVEDli~~a--fke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GR 445 (535)
+-.|.+-|=||--..+.+-|-.||-.. ..+.=..|++=++ -.|-|+|+|.+...|--|.=.|++.-+ +||
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p-----DH~GAivef~d~~~AgKasLaL~G~ef---~gr 90 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS-----DFNGAIIIFRDSKFAAKMLMILNGSQF---QGK 90 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET-----TTTEEEEECSCHHHHHHHHHHHSSEEE---TTE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec-----CCCceEEEEccchhhHHHHhhcCCeee---cCe
Confidence 347888899998889988888888775 3333345555544 458999999999999999999999877 899
Q ss_pred eeeec
Q 009405 446 PLLGS 450 (535)
Q Consensus 446 PL~~S 450 (535)
+|-|.
T Consensus 91 ~Lr~g 95 (117)
T 2l9w_A 91 VIRSG 95 (117)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99764
No 218
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.88 E-value=1.4e+02 Score=25.89 Aligned_cols=75 Identities=9% Similarity=0.041 Sum_probs=52.6
Q ss_pred EEEEecCCCC-CCchhH----HHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceeeeeCCce
Q 009405 372 LVVLENLDPS-YTSTVV----EDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 446 (535)
Q Consensus 372 lVlLqNLDPs-~tS~eV----EDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~ls~GRP 446 (535)
-+++-|||+. |..++. |+|++.. .+.++ --+- +...+..|.|-+.++|..|=-.|++.=+ +|++
T Consensus 7 tLiitnl~~~vF~~~~lk~~~e~Lf~~~-~~~~t--F~~l-----kSFRRirv~F~~~~~A~~AR~~Lh~~~f---~g~~ 75 (104)
T 1wey_A 7 GLIACVANDDVFSESETRAKFESLFRTY-DKDTT--FQYF-----KSFKRVRINFSNPLSAADARLRLHKTEF---LGKE 75 (104)
T ss_dssp EEEEECCCGGGGSTTTHHHHHHHHHHTT-CSSCE--EEEE-----TTTTEEEEECSSTTHHHHHHHTSTTSEE---TTEE
T ss_pred eEEEecCCHHHcCCHHHHHHHHHHHHhh-CcCcc--eeec-----CcceEEEEEeCChHHHHHHHHHhcccee---cCce
Confidence 4678999884 577766 4555432 11111 2222 2346999999999999999999999866 7888
Q ss_pred eeeccCCcCCC
Q 009405 447 LLGSIGTPCFT 457 (535)
Q Consensus 447 L~~S~g~~~~p 457 (535)
+-+=+|-+.++
T Consensus 76 ~r~YFgq~~~~ 86 (104)
T 1wey_A 76 MKLYFAQTLHI 86 (104)
T ss_dssp CEEECCCCSSC
T ss_pred eEEEecCCCCC
Confidence 88888875554
No 219
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=23.21 E-value=96 Score=27.15 Aligned_cols=80 Identities=10% Similarity=0.168 Sum_probs=47.5
Q ss_pred CChHHHHHhhhhcccEEEEecCCC-----------CCCchhHHHHHHHH---------------hhccceeeeccCCCCC
Q 009405 357 LPWEERIRVAHEHGTLVVLENLDP-----------SYTSTVVEDLVWHA---------------FKENCSAKMIPRVAFA 410 (535)
Q Consensus 357 lPWeerl~~A~E~GrlVlLqNLDP-----------s~tS~eVEDli~~a---------------fke~C~AKmI~~~~~s 410 (535)
..|++-|..|-++|+.|+|.=-.+ .|+..+|.++|+.- |-+...+.-.|...|=
T Consensus 29 ~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fl 108 (153)
T 2dlx_A 29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSIL 108 (153)
T ss_dssp SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEE
T ss_pred cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEEEE
Confidence 389999999999999888753332 35667777777431 2222233345555555
Q ss_pred CCCCceeEEEeechHHHHHHHhhhccc
Q 009405 411 SPYFGQSFVIFKTREVAELVVTKLEEG 437 (535)
Q Consensus 411 spn~G~AfvIFkTkeAAdsai~KL~eg 437 (535)
+|+.|+-+..+.- --|+.++..|+..
T Consensus 109 d~~~G~~l~~~~g-~~~~~fl~~L~~~ 134 (153)
T 2dlx_A 109 DPRTGQKLVEWHQ-LDVSSFLDQVTGF 134 (153)
T ss_dssp CTTTCCCCEEESS-CCHHHHHHHHHHH
T ss_pred eCCCCcEeeecCC-CCHHHHHHHHHHH
Confidence 6665643332322 3566666666665
No 220
>1xi6_A Extragenic suppressor; structural genomics, southeast collaboratory for structural genomics hyperthermophIle, PSI; 2.80A {Pyrococcus furiosus} SCOP: e.7.1.1
Probab=20.86 E-value=93 Score=29.14 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=52.3
Q ss_pred hHHHHHHHHhhccceeeeccCCCCCCCCCceeEEEeechHHHHHHHhhhccceee---eeCCceeeeccCCcCCCCCCCc
Q 009405 386 VVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL---LSNGRPLLGSIGTPCFTGKQSK 462 (535)
Q Consensus 386 eVEDli~~afke~C~AKmI~~~~~sspn~G~AfvIFkTkeAAdsai~KL~egCL~---ls~GRPL~~S~g~~~~p~k~s~ 462 (535)
.+|++|+.+|++.. ..++---.-.....+.-+.|.-=-+.--.+++.++.-|++ +.+|+|+. |.+..|-....
T Consensus 57 ~ae~~i~~~L~~~~-~~ilgEE~~~~~~~~~~~WiiDPIDGT~nF~~g~p~~~vsIal~~~g~~v~---GvV~~P~~~~~ 132 (262)
T 1xi6_A 57 LAEDLILSRITELG-VNVVSEEVGVIDNESEYTVIVDPLDGSYNFIAGIPFFALSLAVFKKDKPIY---AIIYEPMTERF 132 (262)
T ss_dssp HHHHHHHHHHGGGT-CEEEETTTEEECCCCSEEEEEEEEESHHHHHHTCSCCEEEEEEEETTEEEE---EEEEETTTTEE
T ss_pred HHHHHHHHHHHHhC-CEEEcCCcCCCCCCCCEEEEEECCcChHHHHcCCCcEEEEEEEEECCEEEE---EEEEecCCCCE
Confidence 45699999999988 6666555432212233455565566667899999999974 56999998 56667766666
Q ss_pred ccc
Q 009405 463 FVG 465 (535)
Q Consensus 463 f~G 465 (535)
|++
T Consensus 133 ~~a 135 (262)
T 1xi6_A 133 FEG 135 (262)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
Done!