Query 009406
Match_columns 535
No_of_seqs 327 out of 2228
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 12:43:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02281 chlorophyllide a oxyg 100.0 6E-136 1E-140 1093.6 50.0 533 1-533 1-536 (536)
2 PLN00095 chlorophyllide a oxyg 100.0 1.7E-49 3.8E-54 410.8 25.0 270 212-489 67-370 (394)
3 PLN02518 pheophorbide a oxygen 100.0 1.6E-48 3.5E-53 425.2 29.5 308 211-525 84-432 (539)
4 COG4638 HcaE Phenylpropionate 100.0 1.2E-39 2.6E-44 342.9 23.5 316 177-526 4-359 (367)
5 TIGR03228 anthran_1_2_A anthra 100.0 2.5E-35 5.5E-40 315.3 21.5 180 177-374 15-218 (438)
6 TIGR03229 benzo_1_2_benA benzo 100.0 3.9E-35 8.4E-40 314.0 22.9 179 177-374 15-220 (433)
7 cd04337 Rieske_RO_Alpha_Cao Ca 100.0 2.8E-30 6E-35 234.6 12.4 122 204-325 4-125 (129)
8 cd03479 Rieske_RO_Alpha_PhDO_l 100.0 1.2E-29 2.5E-34 234.6 12.8 132 201-332 5-142 (144)
9 cd03537 Rieske_RO_Alpha_PrnD T 100.0 1.4E-29 3.1E-34 228.1 12.0 109 216-325 2-119 (123)
10 cd04338 Rieske_RO_Alpha_Tic55 100.0 3.5E-29 7.5E-34 228.9 12.6 115 211-325 11-130 (134)
11 cd03531 Rieske_RO_Alpha_KSH Th 100.0 3.2E-28 6.8E-33 216.9 12.2 109 217-325 1-111 (115)
12 cd03545 Rieske_RO_Alpha_OHBDO_ 100.0 4.9E-28 1.1E-32 225.3 12.0 131 178-325 2-148 (150)
13 cd03480 Rieske_RO_Alpha_PaO Ri 99.9 6.2E-28 1.3E-32 221.7 11.1 113 213-325 13-134 (138)
14 cd03532 Rieske_RO_Alpha_VanA_D 99.9 1.1E-27 2.4E-32 213.5 11.7 110 214-324 2-113 (116)
15 cd03548 Rieske_RO_Alpha_OMO_CA 99.9 4.9E-27 1.1E-31 215.1 12.2 112 211-323 8-126 (136)
16 cd03541 Rieske_RO_Alpha_CMO Ri 99.9 8.3E-27 1.8E-31 208.8 11.2 108 217-324 1-115 (118)
17 cd03539 Rieske_RO_Alpha_S5H Th 99.9 8.3E-27 1.8E-31 211.9 10.7 108 218-325 1-127 (129)
18 cd03472 Rieske_RO_Alpha_BPDO_l 99.9 3E-26 6.6E-31 207.9 11.2 114 212-325 3-126 (128)
19 cd03469 Rieske_RO_Alpha_N Ries 99.9 3.6E-26 7.7E-31 203.1 10.5 107 218-324 1-115 (118)
20 cd03538 Rieske_RO_Alpha_AntDO 99.9 5.2E-26 1.1E-30 210.9 11.8 126 183-325 5-144 (146)
21 cd03535 Rieske_RO_Alpha_NDO Ri 99.9 1.7E-25 3.7E-30 201.5 11.3 110 216-325 1-121 (123)
22 cd03536 Rieske_RO_Alpha_DTDO T 99.9 3.9E-25 8.5E-30 199.2 11.3 108 218-325 1-119 (123)
23 cd03528 Rieske_RO_ferredoxin R 99.9 3E-24 6.4E-29 184.8 10.8 96 218-318 1-97 (98)
24 cd03542 Rieske_RO_Alpha_HBDO R 99.9 5.8E-24 1.3E-28 191.7 11.4 108 218-325 1-121 (123)
25 cd03530 Rieske_NirD_small_Baci 99.9 7.8E-24 1.7E-28 182.6 10.8 97 218-319 1-98 (98)
26 cd03474 Rieske_T4moC Toluene-4 99.9 1.5E-23 3.2E-28 184.1 12.0 103 218-325 1-104 (108)
27 TIGR02377 MocE_fam_FeS Rieske 99.9 5.2E-23 1.1E-27 179.2 11.0 99 217-319 1-100 (101)
28 cd03529 Rieske_NirD Assimilato 99.9 6.7E-23 1.5E-27 178.8 10.3 97 218-319 1-103 (103)
29 TIGR02378 nirD_assim_sml nitri 99.9 9.4E-23 2E-27 178.3 10.1 99 217-320 1-105 (105)
30 cd03478 Rieske_AIFL_N AIFL (ap 99.9 1.9E-22 4.1E-27 173.2 9.5 93 220-317 2-95 (95)
31 PRK09965 3-phenylpropionate di 99.9 2.9E-22 6.3E-27 175.9 10.4 101 217-323 2-104 (106)
32 PF00355 Rieske: Rieske [2Fe-2 99.8 7.1E-21 1.5E-25 163.4 8.5 93 217-314 1-97 (97)
33 PF13806 Rieske_2: Rieske-like 99.8 1.4E-20 3.1E-25 165.0 10.0 98 217-319 1-104 (104)
34 cd03467 Rieske Rieske domain; 99.8 3.8E-20 8.3E-25 159.4 10.4 95 218-316 1-97 (98)
35 PRK09511 nirD nitrite reductas 99.8 3.8E-20 8.2E-25 163.3 10.6 98 217-319 3-107 (108)
36 COG2146 {NirD} Ferredoxin subu 99.8 9.5E-20 2.1E-24 160.3 10.5 101 216-320 3-105 (106)
37 cd03477 Rieske_YhfW_C YhfW fam 99.8 1.5E-19 3.2E-24 154.8 9.5 87 221-312 2-88 (91)
38 cd08878 RHO_alpha_C_DMO-like C 99.7 1.9E-17 4.2E-22 156.3 14.3 171 345-522 5-195 (196)
39 cd03476 Rieske_ArOX_small Smal 99.7 7.9E-18 1.7E-22 152.5 10.0 95 220-319 5-114 (126)
40 cd03471 Rieske_cytochrome_b6f 99.7 7.3E-17 1.6E-21 145.7 10.5 90 229-323 22-114 (126)
41 TIGR02694 arsenite_ox_S arseni 99.6 7.4E-16 1.6E-20 140.1 9.7 94 220-318 8-115 (129)
42 cd00680 RHO_alpha_C C-terminal 99.6 7.6E-15 1.6E-19 137.7 15.4 161 344-522 3-186 (188)
43 cd03473 Rieske_CMP_Neu5Ac_hydr 99.6 1.1E-15 2.5E-20 133.5 7.9 72 224-296 14-89 (107)
44 cd03470 Rieske_cytochrome_bc1 99.6 4E-15 8.6E-20 134.9 10.4 92 223-318 5-125 (126)
45 cd08885 RHO_alpha_C_1 C-termin 99.5 2.6E-13 5.5E-18 129.9 16.4 163 343-522 3-188 (190)
46 PRK13474 cytochrome b6-f compl 99.5 1.1E-13 2.4E-18 132.5 9.9 88 228-320 73-163 (178)
47 cd08887 RHO_alpha_C_3 C-termin 99.5 7.1E-13 1.5E-17 125.8 13.9 161 344-522 4-183 (185)
48 cd08883 RHO_alpha_C_CMO-like C 99.5 1.5E-12 3.2E-17 123.7 15.2 160 343-522 3-173 (175)
49 cd08884 RHO_alpha_C_GbcA-like 99.4 4E-12 8.6E-17 123.9 15.4 167 337-521 7-202 (205)
50 cd08886 RHO_alpha_C_2 C-termin 99.4 4E-12 8.7E-17 121.8 13.2 160 343-521 3-181 (182)
51 TIGR01416 Rieske_proteo ubiqui 99.3 5E-12 1.1E-16 120.8 10.9 93 217-314 40-168 (174)
52 PF00848 Ring_hydroxyl_A: Ring 99.3 9.7E-12 2.1E-16 117.9 7.8 159 345-522 11-206 (209)
53 cd03475 Rieske_SoxF_SoxL SoxF 99.1 5.9E-10 1.3E-14 105.5 10.4 68 247-318 72-158 (171)
54 PF08417 PaO: Pheophorbide a o 98.8 8.8E-09 1.9E-13 88.4 7.8 88 405-503 1-91 (92)
55 cd08880 RHO_alpha_C_ahdA1c-lik 98.7 1.6E-07 3.5E-12 93.0 12.5 31 345-375 5-37 (222)
56 cd08882 RHO_alpha_C_MupW-like 98.7 1.1E-07 2.3E-12 95.6 10.4 85 437-522 146-241 (243)
57 COG0723 QcrA Rieske Fe-S prote 98.6 7.4E-08 1.6E-12 92.2 6.8 76 239-318 83-164 (177)
58 cd08879 RHO_alpha_C_AntDO-like 98.5 3.7E-07 7.9E-12 91.3 8.1 31 344-374 4-34 (237)
59 cd08881 RHO_alpha_C_NDO-like C 98.4 8.5E-07 1.9E-11 87.0 9.2 33 343-375 8-41 (206)
60 TIGR03171 soxL2 Rieske iron-su 98.2 2.1E-06 4.6E-11 88.2 6.9 69 247-319 173-276 (321)
61 KOG1671 Ubiquinol cytochrome c 98.1 2.6E-06 5.6E-11 81.7 5.0 75 223-297 91-191 (210)
62 PF11723 Aromatic_hydrox: Homo 98.0 3.3E-05 7.2E-10 76.4 9.7 184 337-526 22-239 (240)
63 KOG1336 Monodehydroascorbate/f 94.2 0.026 5.7E-07 61.4 2.3 38 261-298 1-39 (478)
64 PRK14127 cell division protein 86.4 1.9 4.1E-05 38.4 6.0 38 105-142 27-68 (109)
65 PF13118 DUF3972: Protein of u 65.2 17 0.00037 33.2 5.8 49 96-144 69-118 (126)
66 PRK14549 50S ribosomal protein 62.3 30 0.00064 28.3 6.2 46 118-163 12-62 (69)
67 PRK14161 heat shock protein Gr 59.4 36 0.00079 32.9 7.3 54 98-157 12-65 (178)
68 TIGR02449 conserved hypothetic 59.2 41 0.00089 27.3 6.4 59 102-160 5-63 (65)
69 PF11932 DUF3450: Protein of u 58.4 45 0.00098 33.6 8.3 29 229-257 178-208 (251)
70 cd00427 Ribosomal_L29_HIP Ribo 57.5 34 0.00074 26.7 5.6 28 118-145 6-33 (57)
71 PF09740 DUF2043: Uncharacteri 54.3 7.4 0.00016 34.7 1.6 36 250-288 63-100 (110)
72 PF10080 DUF2318: Predicted me 51.6 1.6E+02 0.0034 26.0 9.4 78 227-320 2-92 (102)
73 PRK00294 hscB co-chaperone Hsc 51.1 75 0.0016 30.6 8.0 91 70-163 53-162 (173)
74 PF10392 COG5: Golgi transport 50.7 77 0.0017 28.8 7.7 67 69-142 26-103 (132)
75 PF13334 DUF4094: Domain of un 49.5 12 0.00027 32.4 2.2 32 108-139 63-94 (95)
76 PRK00888 ftsB cell division pr 49.2 48 0.001 29.2 5.9 50 119-168 28-77 (105)
77 PF07820 TraC: TraC-like prote 49.1 1.1E+02 0.0024 26.5 7.8 33 117-149 1-33 (92)
78 PF04977 DivIC: Septum formati 48.1 49 0.0011 26.6 5.5 51 116-166 15-65 (80)
79 PRK14156 heat shock protein Gr 47.5 70 0.0015 31.0 7.2 54 103-157 20-73 (177)
80 PF05546 She9_MDM33: She9 / Md 46.5 51 0.0011 32.7 6.1 49 109-158 24-72 (207)
81 PF11559 ADIP: Afadin- and alp 46.0 1.2E+02 0.0027 27.9 8.5 86 68-157 27-112 (151)
82 PRK09039 hypothetical protein; 43.4 95 0.0021 33.0 8.1 29 120-148 139-167 (343)
83 COG1938 Archaeal enzymes of AT 42.7 48 0.001 33.7 5.4 49 102-150 188-236 (244)
84 PF05278 PEARLI-4: Arabidopsis 42.1 1.1E+02 0.0023 31.7 7.8 40 120-159 202-241 (269)
85 PF10186 Atg14: UV radiation r 39.8 1.3E+02 0.0028 30.3 8.3 42 116-157 54-95 (302)
86 PF06005 DUF904: Protein of un 39.7 1.4E+02 0.003 24.6 6.8 31 127-157 41-71 (72)
87 PF07743 HSCB_C: HSCB C-termin 39.4 2E+02 0.0043 23.3 7.8 63 97-163 8-74 (78)
88 PRK00306 50S ribosomal protein 38.2 1.3E+02 0.0027 24.2 6.3 48 117-164 8-59 (66)
89 TIGR02209 ftsL_broad cell divi 37.1 89 0.0019 25.7 5.5 47 119-166 25-71 (85)
90 PRK04654 sec-independent trans 36.8 1E+02 0.0022 30.8 6.5 53 98-151 35-87 (214)
91 PRK01773 hscB co-chaperone Hsc 36.4 1.7E+02 0.0036 28.2 7.9 62 98-163 96-161 (173)
92 PF07028 DUF1319: Protein of u 36.3 48 0.001 30.4 3.8 23 84-106 5-39 (126)
93 PF08537 NBP1: Fungal Nap bind 36.1 88 0.0019 33.1 6.3 48 119-166 176-223 (323)
94 PF00831 Ribosomal_L29: Riboso 35.2 1.3E+02 0.0028 23.6 5.7 28 118-145 7-34 (58)
95 PF15155 MRFAP1: MORF4 family- 34.8 81 0.0017 28.1 4.9 49 104-162 12-64 (127)
96 PF03195 DUF260: Protein of un 34.8 44 0.00094 29.4 3.3 48 91-141 52-101 (101)
97 KOG2010 Double stranded RNA bi 34.4 97 0.0021 32.8 6.2 49 120-168 149-215 (405)
98 PRK11637 AmiB activator; Provi 34.2 1.4E+02 0.0031 32.4 8.0 26 123-148 94-119 (428)
99 PRK03578 hscB co-chaperone Hsc 33.7 2E+02 0.0043 27.7 7.9 89 72-163 57-165 (176)
100 PRK00461 rpmC 50S ribosomal pr 32.9 1.6E+02 0.0034 25.3 6.2 52 118-169 8-63 (87)
101 PF05377 FlaC_arch: Flagella a 32.8 59 0.0013 25.6 3.3 45 108-163 4-48 (55)
102 PRK10884 SH3 domain-containing 32.7 1.3E+02 0.0028 29.9 6.6 53 111-165 88-140 (206)
103 PF13094 CENP-Q: CENP-Q, a CEN 32.3 2.1E+02 0.0045 26.7 7.7 46 114-159 37-82 (160)
104 PF08606 Prp19: Prp19/Pso4-lik 31.6 54 0.0012 27.0 3.1 31 121-152 25-55 (70)
105 PF08317 Spc7: Spc7 kinetochor 30.7 1.5E+02 0.0032 31.2 7.1 19 217-240 293-311 (325)
106 PRK00736 hypothetical protein; 30.6 95 0.002 25.2 4.4 20 93-112 6-26 (68)
107 KOG0980 Actin-binding protein 30.4 1.6E+02 0.0035 35.2 7.6 80 69-156 445-532 (980)
108 TIGR00012 L29 ribosomal protei 30.2 1.8E+02 0.0039 22.5 5.7 27 118-144 5-31 (55)
109 TIGR00219 mreC rod shape-deter 28.8 1.2E+02 0.0026 31.4 6.0 51 104-154 52-102 (283)
110 KOG1594 Uncharacterized enzyme 28.6 71 0.0015 33.0 4.0 58 16-73 59-117 (305)
111 PRK06342 transcription elongat 28.4 96 0.0021 29.5 4.7 41 120-160 36-78 (160)
112 PF11572 DUF3234: Protein of u 27.8 18 0.0004 31.3 -0.2 52 212-267 3-54 (103)
113 COG0497 RecN ATPase involved i 27.5 1.7E+02 0.0036 33.4 7.1 59 98-156 322-380 (557)
114 COG1645 Uncharacterized Zn-fin 26.9 46 0.00099 30.7 2.1 29 255-286 27-55 (131)
115 PF06148 COG2: COG (conserved 26.2 1.3E+02 0.0028 27.2 5.0 47 113-159 64-110 (133)
116 PF13815 Dzip-like_N: Iguana/D 25.9 81 0.0018 28.2 3.6 7 84-90 38-44 (118)
117 PF13863 DUF4200: Domain of un 25.7 2.7E+02 0.006 24.5 7.0 65 98-162 54-118 (126)
118 PF10498 IFT57: Intra-flagella 25.6 2.8E+02 0.0061 29.9 8.1 74 82-157 212-305 (359)
119 COG1842 PspA Phage shock prote 25.5 3.1E+02 0.0067 27.5 8.0 69 101-169 14-82 (225)
120 PRK14147 heat shock protein Gr 25.3 1.8E+02 0.0039 28.0 6.0 39 120-158 27-65 (172)
121 PF12761 End3: Actin cytoskele 24.0 74 0.0016 31.3 3.1 22 122-143 100-121 (195)
122 PF04698 Rab_eff_C: Rab effect 23.9 1.7E+02 0.0037 34.1 6.4 49 110-159 573-621 (714)
123 smart00549 TAFH TAF homology. 23.2 1.4E+02 0.003 26.0 4.2 39 98-137 41-79 (92)
124 COG5570 Uncharacterized small 23.0 1.2E+02 0.0026 23.7 3.4 42 101-142 16-57 (57)
125 PRK14164 heat shock protein Gr 22.6 2.1E+02 0.0044 28.8 6.0 40 118-157 77-116 (218)
126 PRK11637 AmiB activator; Provi 22.4 3E+02 0.0065 29.9 7.9 56 105-160 69-124 (428)
127 PRK02119 hypothetical protein; 22.0 1.7E+02 0.0036 24.1 4.4 19 93-111 10-29 (73)
128 PRK05014 hscB co-chaperone Hsc 21.5 4.2E+02 0.0091 25.3 7.7 90 70-163 50-160 (171)
129 PRK09039 hypothetical protein; 21.5 3.3E+02 0.0071 29.0 7.7 33 120-152 146-185 (343)
130 PRK14139 heat shock protein Gr 21.2 2.4E+02 0.0052 27.6 6.0 39 120-158 41-79 (185)
131 PRK13723 conjugal transfer pil 20.8 3.4E+02 0.0075 30.2 7.8 72 95-166 361-439 (451)
132 PF12325 TMF_TATA_bd: TATA ele 20.7 6.4E+02 0.014 22.9 8.4 46 119-164 69-114 (120)
133 PF05529 Bap31: B-cell recepto 20.7 75 0.0016 30.6 2.5 20 121-140 157-176 (192)
134 PF11559 ADIP: Afadin- and alp 20.1 5.4E+02 0.012 23.6 8.0 55 101-155 84-138 (151)
No 1
>PLN02281 chlorophyllide a oxygenase
Probab=100.00 E-value=6e-136 Score=1093.62 Aligned_cols=533 Identities=76% Similarity=1.304 Sum_probs=474.8
Q ss_pred Cc-chhcccccccccccc--cccccccccccccceEEEEEecCCCccccccCcceeeeeecCCCCCCCccCCceeehHhH
Q 009406 1 MT-AIATAAALSLPISLY--RPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQA 77 (535)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (535)
|| +++|+|.||||+||+ +|++|++||||+|||+||||||||+|+++|||.|++||||||||+++|++||||||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (536)
T PLN02281 1 MNAAVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVEDPRSKAPPYKGKFLDVNQA 80 (536)
T ss_pred CCccccchhhhccChhhhcccccccccccccCCceEEEEEEcccccccccccCceEeeeccCCCccCcccccccccHHHH
Confidence 66 499999999999998 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcceeeccccchhHHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHH
Q 009406 78 LEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (535)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~ 157 (535)
|||+||||||||||||||+||||.||+||||||||||||+|||||||||||||||||+|||+|||+||||||++|+||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (536)
T PLN02281 81 IEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAH 160 (536)
T ss_pred HHHHHhhhhcccchhhhhHHHHHHHhHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccCCcCcccccCCCCCChhhhHHHhccCCCCcccccCCCCCccccccCceEEeeecCCCCCCCeEEEEE
Q 009406 158 MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDC 237 (535)
Q Consensus 158 me~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~W~~va~s~eL~~g~~~~~~l 237 (535)
||+++|+++|+|++.++++-.++.+++++..++...++.++++++++||++||...++|.||+||.++||++|+++.+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~lrn~Wy~Va~s~EL~~g~~~~v~l 240 (536)
T PLN02281 161 MEELVNDRLLPGRVVTELDKPSSSTTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIEC 240 (536)
T ss_pred HHHHhhhhccCCCccccccccccCCcCcchhhhhhhcccccccccccCCCCCcchhhhcccEEEEEHHHCCCCCeEEEEE
Confidence 99999999999988776644444444455777888899999999999999999999999999999999999899999999
Q ss_pred CCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccccCCcccccccccccceEEecCcEE
Q 009406 238 FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIW 317 (535)
Q Consensus 238 ~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~dG~c~~iP~~~~~~~~L~~~pv~e~~G~Iw 317 (535)
+|++++|||+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|+.+..+.++++|||+|++|+||
T Consensus 241 lG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD~dG~cv~iP~~~~~~~~l~sYPV~e~~GlVw 320 (536)
T PLN02281 241 FEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMIW 320 (536)
T ss_pred CCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCCCCEECCCCCEeeCCCCccccCCcceEeEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999998765568899999999999999
Q ss_pred EcCCCCCCCCCCCCCCCCCCceeeeEEEEEeecchhhHhhhcCCCCCCCCcCccccccCCCCCceeeeecCCCCCCcccc
Q 009406 318 IWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 397 (535)
Q Consensus 318 V~l~~~~p~~~lp~~~~~~~~~~~~~~~~~~~~nwk~~~EN~lD~~H~~~vH~~t~~~~~~vp~~v~~~~~~~~~~g~~~ 397 (535)
||+++.++++.+|.+..+.++.......+++++||++++||++|+||++|+|+++++..+.++..+....+...+.++|.
T Consensus 321 V~lgd~~~aP~~p~ld~p~~~~~~~~~~~~~~~nwkllvENllD~~H~~fvH~~t~g~~~~~p~~v~~~~~~~~~~p~~~ 400 (536)
T PLN02281 321 IWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWD 400 (536)
T ss_pred EEeCCCCCCCCCccccCcccceEEEEEEEEecCCHHHHHHhccccccccccCcccccCcccCCceeEEecccCCCCcccc
Confidence 99987655445666655446665555678999999999999999999999999999987666665555444444555665
Q ss_pred CCCceeEEcCceeEEEEeeecCCCCcCCCCcccccceeEEEEEEecCCCCeeEeeeeeeccchhhccCchhHHHHHHHHH
Q 009406 398 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFA 477 (535)
Q Consensus 398 ~~~~~~~f~~P~~v~~~~g~~~pg~~~~~~~~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~~~~~p~~~~~~~~f~ 477 (535)
..+..+.|.+||++...+++..+|...+........++..++.+||+++++||+||.+.+||..+.+..++...++.++.
T Consensus 401 ~~pv~~~f~aP~~v~l~i~~~~~G~~~~~~~~~~~~~~~~~h~~TPeT~~sTryF~~~~Rnf~~~~~d~~~~~~~l~~~~ 480 (536)
T PLN02281 401 PYPIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWRHFA 480 (536)
T ss_pred cCCceEEEECcEEEEEeeccccCCccccccccccccceEEEEEEEECCCCeEEEEEEecccCccccccccchHHHHHHHh
Confidence 55557889999999888888777764433334445567789999999999999999999999776434444444466778
Q ss_pred HHHHhhHHHHHHHHhhhccCCCCcCCCCccCChHHHHHHHHHHHHHcCCCCCCCCC
Q 009406 478 EQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPFMK 533 (535)
Q Consensus 478 ~~V~~ED~~IlE~qQ~~l~~g~~~~~l~~~aD~~~v~yRrwl~~l~~g~~~~p~~~ 533 (535)
..+|+||+.|+|+||+.+..+...+++++++|+++++||||++++++|.+++||++
T Consensus 481 ~~vF~ED~~iLEaQQ~~i~~~~~~~~l~l~aD~~~v~~RRWl~~~~~~~~~~pf~~ 536 (536)
T PLN02281 481 EQVLNEDLRLVLGQQERMLNGANIWNLPVAYDKLGVRYRLWRNAVDRGDDKLPFSG 536 (536)
T ss_pred hHhhHhHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHhhcccCCCCCCC
Confidence 89999999999999999988777889999999999999999999999999999985
No 2
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=100.00 E-value=1.7e-49 Score=410.77 Aligned_cols=270 Identities=38% Similarity=0.773 Sum_probs=225.2
Q ss_pred ccccCceEEeeecCCC-CCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcCCCC
Q 009406 212 TRLKNFWFPVAFSTDL-KDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 290 (535)
Q Consensus 212 ~~~~~~W~~va~s~eL-~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~dG~ 290 (535)
...++.||+||+++|| ++|+++.++++|++++|||+.+|+++|+.|.|||||++|+.|.++++.|+||||||+||.+|+
T Consensus 67 ~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~~G~ 146 (394)
T PLN00095 67 ADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYETGGE 146 (394)
T ss_pred CchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCCCCEEEEeccCCCCCCccccCcccCCEEEecCCCcEECCCCC
Confidence 3458999999999999 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccc--ccccccccceEEecCcEEEcCCCCCCC------------------CCCCC-CCCCCCceeeeEEEEEee
Q 009406 291 CEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEPPT------------------ATIPC-LLPPSGFEIHAEIVMELP 349 (535)
Q Consensus 291 c~~iP~~~~--~~~~L~~~pv~e~~G~IwV~l~~~~p~------------------~~lp~-~~~~~~~~~~~~~~~~~~ 349 (535)
|+.+|+.+. .+.++++|||++++|+||||+++..|. ...|. +.++++|..+.+..+|++
T Consensus 147 C~~iP~~~~~~~~~~v~tYPV~e~dGlVwVw~G~~~p~dflg~~~~~e~~~~~~~~~~~P~~~~~~~gf~~~aev~~Dlp 226 (394)
T PLN00095 147 CAKMPSCKKFLKGVFADAAPVIERDGFIFLWAGESDPADFVGPEAACESIDDDVLAANEPGMFAPGEGFTPMAEVIADIK 226 (394)
T ss_pred EeeCCCccccccccccceEEEEEECCEEEEEeCCcchhhhccccccccccccchhhccCCcccCCCCCceEEEEEEEecc
Confidence 999997532 346789999999999999999865433 12333 444568888777778999
Q ss_pred cchhhHhhhcCCCCC-CCCcCcccccc----C---CCCCceeeeecCCCCCCccccCCCceeEEcCceeEEEEeeecC-C
Q 009406 350 IEHGLLLDNLLDLAH-APFTHTSTFAK----G---WSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISK-P 420 (535)
Q Consensus 350 ~nwk~~~EN~lD~~H-~~~vH~~t~~~----~---~~vp~~v~~~~~~~~~~g~~~~~~~~~~f~~P~~v~~~~g~~~-p 420 (535)
+.|.+++||++|++| .+|+|+.||.- . +..+.... .....++.+.|++++++|+|.+||++.+++++.+ |
T Consensus 227 ~d~~~L~ENllD~aH~a~~~~t~tf~~~~~~r~~~~~~~~~~~-~~~~~~l~g~~~~~p~~~~F~ppc~~~s~i~l~~~~ 305 (394)
T PLN00095 227 LDADEVLERLLAIGERARREATVSFDVSDAKRGRDALFPVDGT-KIIAKVLRGGRDAVPQSATFKPACVIASTIALEDGP 305 (394)
T ss_pred ccHHHHHHhhcCccccCCccCceeeecccccccccCccchhhh-hhhhhhheeecccCCcceeEcCceeeeeeecccccC
Confidence 999999999999999 69999988851 1 11121111 1224467888999999999999999999999875 5
Q ss_pred CCcCCCCcccccceeEEEEEEecCCCCeeEeeeeeeccchh---hccCchhHHHHHHHHHHHHHhhHHHHHH
Q 009406 421 GKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFAS---VLKHVPFMQYLWRHFAEQVLNEDLRLVL 489 (535)
Q Consensus 421 g~~~~~~~~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~---~~~~~p~~~~~~~~f~~~V~~ED~~IlE 489 (535)
|+.. .|..|++++|+|.|.++++||++++|++||.. +.+.+|. ..|.+++.+|+.||++++.
T Consensus 306 g~~~-----~~~~~l~qlhvclP~~~G~tRll~R~~~dF~~~~~~~~~~~~--~~w~~~a~~vl~e~l~~v~ 370 (394)
T PLN00095 306 GGGD-----GTDMNVEQLHVCLPAKPGLCRLLFRLAFDFVAVPEGAQAAAG--DVWANLAMMVLKEELEDVR 370 (394)
T ss_pred CCCc-----cccceeeeEEEEEecCCCceEEEEeecccccccHHHhHhchH--HHHHHHHHHHHHHHHHHHh
Confidence 5533 35578999999999999999999999999975 5555654 6889999999999999875
No 3
>PLN02518 pheophorbide a oxygenase
Probab=100.00 E-value=1.6e-48 Score=425.18 Aligned_cols=308 Identities=21% Similarity=0.413 Sum_probs=224.3
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEc-CCCcEEEEeecCCCCCCCCCCCccc-CCeeeccCCCeeEcCC
Q 009406 211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTD 288 (535)
Q Consensus 211 ~~~~~~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~-~dG~i~A~~n~CpHRga~Ls~G~v~-~~~l~CPyHGW~Fd~d 288 (535)
...+++.||+||.++||++|+++.++++|+++||||+ .+|+++||.|+|||||++|+.|.++ ++.|+||||||+||.+
T Consensus 84 ~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW~Fd~~ 163 (539)
T PLN02518 84 KFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC 163 (539)
T ss_pred hhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCCCCEEcCC
Confidence 3468999999999999988999999999999999998 8999999999999999999999985 6799999999999999
Q ss_pred CCccccCCccc----------ccccccccceEEecCcEEEcCCCCC----CCCCCCCCC---CCCCceeeeEEEEEeecc
Q 009406 289 GKCEKMPSTQL----------RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIPCLL---PPSGFEIHAEIVMELPIE 351 (535)
Q Consensus 289 G~c~~iP~~~~----------~~~~L~~~pv~e~~G~IwV~l~~~~----p~~~lp~~~---~~~~~~~~~~~~~~~~~n 351 (535)
|+|+.+|+... ...++++|||+|++|+||||+++++ +...+|.+. ++++|... ....+++++
T Consensus 164 G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~~a~~~~~P~~~~~~~~~~~~~~-~~~~~~~~~ 242 (539)
T PLN02518 164 GSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWERAQATKPPMLPDEFDDPEFSTV-TIQRDLFYG 242 (539)
T ss_pred CCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccccccccccCCCCcccccCCCceeE-EEEEEEecC
Confidence 99999997521 2357999999999999999998642 122344432 23445432 345689999
Q ss_pred hhhHhhhcCCCCCCCCcCccccccCCC-CCceeeee-cCCCCCCcccc-CCCceeEEcCceeEEEEeeecCCCCcCCCCc
Q 009406 352 HGLLLDNLLDLAHAPFTHTSTFAKGWS-VPSLVKFL-TPASGLQGYWD-PYPIDMEFRPPCMVLSTIGISKPGKLEGQNT 428 (535)
Q Consensus 352 wk~~~EN~lD~~H~~~vH~~t~~~~~~-vp~~v~~~-~~~~~~~g~~~-~~~~~~~f~~P~~v~~~~g~~~pg~~~~~~~ 428 (535)
|++++||++|++|++|+|++++|.... .+...+.. ....++.+.+. .......|.+||++...+++.. + .+..
T Consensus 243 ~~~l~EN~lD~sH~pfvH~~~~G~~~~~~~~~~~v~~~~~~Gf~g~~~~~~~~~~~F~~P~~~~~~~~~~~-~-~~~~-- 318 (539)
T PLN02518 243 YDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKVESSGPWGFAGANSDNPRITAKFVAPCYYINKIEIDT-K-LPIV-- 318 (539)
T ss_pred chhHHHhCCccchhceeccccccCccccccccceEEEcCCCcccccccCCCceEEEEECCeEEEEeeeeec-c-ccCC--
Confidence 999999999999999999999986421 12111111 11122333221 1224578999998776554431 1 0000
Q ss_pred ccccceeEEEEEEecCCCCeeEeeeeeeccchhh-------ccCchhHHHHHHHHHHHHHhhHHHHHHHHhhhccCC-C-
Q 009406 429 RQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASV-------LKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNG-A- 499 (535)
Q Consensus 429 ~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~-------~~~~p~~~~~~~~f~~~V~~ED~~IlE~qQ~~l~~g-~- 499 (535)
......+...++++|+++++||++|.+.+||... .+.+|-.-. +.-.++|++||+.++++|++.+... .
T Consensus 319 ~~~~~~~~~~~~~tP~s~g~tr~f~~~~Rnf~~~~~~~~~~~k~~PrW~~--h~~~n~Vl~~D~~~lh~Qe~~~~~~~~e 396 (539)
T PLN02518 319 GDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSMPGPAWWQLVPRWYE--HWTSNKVYDGDMIVLQGQEKIFLSKSGE 396 (539)
T ss_pred CCcceEEEEEEEEEECCCCeEEEEEEecccchhccccchhhhhcCchHHH--HhhhccchHhHHHHHHHHHHHHhhcccc
Confidence 0011234456788999999999999998887322 222332111 1235789999999999998876431 1
Q ss_pred ----------CcCCCCccCChHHHHHHHHHHHHHcC
Q 009406 500 ----------NVWNLPVGYDKLGVRYRLWRDALEKG 525 (535)
Q Consensus 500 ----------~~~~l~~~aD~~~v~yRrwl~~l~~g 525 (535)
..+++|+++|+.+++||||+++++.|
T Consensus 397 ~~~~v~~~w~k~~~~Pt~aD~~viayR~Wl~~~g~g 432 (539)
T PLN02518 397 GSADVNAQYTKLTFTPTQADRFVLAFRNWLRRHGNS 432 (539)
T ss_pred ccccchhhhhhhccCCCchhHHHHHHHHHHHHhCcC
Confidence 13478999999999999999998643
No 4
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=100.00 E-value=1.2e-39 Score=342.90 Aligned_cols=316 Identities=25% Similarity=0.387 Sum_probs=216.5
Q ss_pred cccCCCCCChhhhHHHhccCCCCcccccCCCCCccccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEe
Q 009406 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQ 256 (535)
Q Consensus 177 ~~~~~~~~s~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~ 256 (535)
.++....++++.++.++..+ +.+.||+||+++||+++++++++++|+++||+|+.||+++||.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~~dg~~~al~ 66 (367)
T COG4638 4 RLPPPFYTDPELFQLELERI-----------------FYKHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALA 66 (367)
T ss_pred cCCCccccCHHHHHHHHHHh-----------------hhhCEEEEccHHHCCCCCceeEEEcCeEEEEEECCCCCEEEEe
Confidence 45566678888887777665 3569999999999998899999999999999999999999999
Q ss_pred ecCCCCCCCCCCCcccC-CeeeccCCCeeEcCCCCccccCC--ccc----ccccccccceEEecCcEEEcCCCCCCCC--
Q 009406 257 NTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPS--TQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTA-- 327 (535)
Q Consensus 257 n~CpHRga~Ls~G~v~~-~~l~CPyHGW~Fd~dG~c~~iP~--~~~----~~~~L~~~pv~e~~G~IwV~l~~~~p~~-- 327 (535)
|+|||||++|+.|.+.+ +.|+||||||+|+.+|+|+.+|. ... ...++++||+++++|+||||+++.+++.
T Consensus 67 d~C~HRga~Ls~g~~~~~~~l~CpyHgW~y~~~G~~~~ip~~~~~~~~~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~~~~ 146 (367)
T COG4638 67 DVCPHRGARLSEGRVGGKGRLTCPYHGWTYDLDGRLRGVPARGYPLDFDKSEHGLKRYPVEERYGFIWIWLGDPPPAAEA 146 (367)
T ss_pred ccCCCCCchhccccCCCCceEecCCCceEECCCCcEecCCccccCCCCCHhhCCccccceEEEccEEEEecCCCccChhH
Confidence 99999999999999988 89999999999999999999994 221 2368999999999999999999876331
Q ss_pred -CCCCCC-CCCCceee-eEEEEEeecchhhHhhhcCC-CCCCCCcCccccccCCCCC--c-eeee--------ecCCC--
Q 009406 328 -TIPCLL-PPSGFEIH-AEIVMELPIEHGLLLDNLLD-LAHAPFTHTSTFAKGWSVP--S-LVKF--------LTPAS-- 390 (535)
Q Consensus 328 -~lp~~~-~~~~~~~~-~~~~~~~~~nwk~~~EN~lD-~~H~~~vH~~t~~~~~~vp--~-~v~~--------~~~~~-- 390 (535)
..|... ...++... .......++|||.++||++| +||++++|+++.+...... . .+.. .....
T Consensus 147 ~~~p~~~~~~~~~~~~~~~~~~~~~~nwk~~vEn~~d~~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 226 (367)
T COG4638 147 FLPPAEPYEDDRSRLGGGSFTINVPGNWKLAVENNLDDPYHVPFVHPGLLGTEPHTEVGAYDVTAGGHWDVILATGNPFF 226 (367)
T ss_pred hcccccccccccccccCceEEEEecccceEEeeccCCccccccccCHHHhcccccccccccccccCCceeeeeccCCCcc
Confidence 122222 22233222 34567788999999998887 9999999998876432110 0 0000 00000
Q ss_pred CCCccc-------cCC-----CceeEEcCcee-EEEEeeecCCCCcCCCCcccccceeEEEEEEecCCCCeeEeeeeeec
Q 009406 391 GLQGYW-------DPY-----PIDMEFRPPCM-VLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSL 457 (535)
Q Consensus 391 ~~~g~~-------~~~-----~~~~~f~~P~~-v~~~~g~~~pg~~~~~~~~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~ 457 (535)
...+.. ... ...+.+..|+. +.. .............|+++++|.+......
T Consensus 227 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----------------~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 290 (367)
T COG4638 227 QPLGSEASSYGFDGNYEVHVPGAYLLFLYPNSTVWN----------------HVTVDDVIVFFVQPIDEDETMVTLVWLV 290 (367)
T ss_pred CCcchhhhccccccccccccCceeEEEEcCCchhee----------------eecccceeEEEEEecCCceeEEEeeeee
Confidence 000000 000 00111222210 000 0011123455679999999998865432
Q ss_pred cchhhccCchhHHHHHHHHHHHHHhhHHHHHHHHhhhccCCCC-cCCCCccCChHHHHHHHHHHHHHcCC
Q 009406 458 DFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGA 526 (535)
Q Consensus 458 ~f~~~~~~~p~~~~~~~~f~~~V~~ED~~IlE~qQ~~l~~g~~-~~~l~~~aD~~~v~yRrwl~~l~~g~ 526 (535)
... .......+...++.+...+++||..|+|.||+++.+... ....+...|...+++|+|+.+.....
T Consensus 291 ~~~-~~~~~~~~~~~~~~~~~~~~~qD~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (367)
T COG4638 291 LPD-LVEGVDYFDKLIRRFRQEILDQDREILENQQPGRLSPALERGPYPIREDAGSVQFRRWLAERLVLY 359 (367)
T ss_pred ccc-hhhHHHHHHHHHHHHhccCcHHHHHHHHHHhcccccccccCCCccccccchhhHHHHHHHHHHhhh
Confidence 111 112223344555667788999999999999997666444 34467788999999999987654333
No 5
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=100.00 E-value=2.5e-35 Score=315.33 Aligned_cols=180 Identities=19% Similarity=0.313 Sum_probs=152.1
Q ss_pred cccCCCCCChhhhHHHhccCCCCcccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEE
Q 009406 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCV 255 (535)
Q Consensus 177 ~~~~~~~~s~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~W~~va~s~eL~-~g~~~~~~l~g~~vvv~R~~dG~i~A~ 255 (535)
..+....+|++.++.|+++|| .+.|+.||+++||+ +|+++++++++++|+|+|+.||+++||
T Consensus 15 ~v~~~~ytd~~if~~E~~~IF-----------------~~~W~~v~h~selp~~GDy~t~~ig~~pviv~R~~dG~i~a~ 77 (438)
T TIGR03228 15 RIARDMFTEPELFDLEMELIF-----------------EKNWIYACHESELPNNHDFVTVRAGRQPMIVTRDGKGELHAL 77 (438)
T ss_pred ecChheECCHHHHHHHHHHHH-----------------hhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEE
Confidence 467788999999999999975 56788999999998 599999999999999999999999999
Q ss_pred eecCCCCCCCCCC-CcccCCeeeccCCCeeEcCCCCccccCCcc-------cccccccccceEEecCcEEEcCCCCCCCC
Q 009406 256 QNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGDEPPTA 327 (535)
Q Consensus 256 ~n~CpHRga~Ls~-G~v~~~~l~CPyHGW~Fd~dG~c~~iP~~~-------~~~~~L~~~pv~e~~G~IwV~l~~~~p~~ 327 (535)
.|+|||||++|+. +.++.+.|+||||||+|+.||+|+++|... ....+|+.++|.+++|+||++++++++ .
T Consensus 78 ~N~C~HRGa~L~~~~~Gn~~~~~CPYHgW~y~~dG~L~~vp~~~~y~~~fd~~~~~L~~~rv~~y~GfIFv~l~~~a~-~ 156 (438)
T TIGR03228 78 VNACQHRGATLTRVGKGNQSTFTCPFHAWCYKSDGRLVKVKAPGEYCEGFDKATRGLKKARIASYRGFVFVSLDVAAT-D 156 (438)
T ss_pred cccCCCCCCccccCCccccCEEEcCCCCCcccCCCceeecCcccccCCCCChhhCCCcceeEEEECCEEEEEeCCCCC-C
Confidence 9999999999996 788888999999999999999999998542 124678899999999999999987642 2
Q ss_pred CCCCCCCC--------------CCceee-eEEEEEeecchhhHhhhcCCCCCCCCcCccccc
Q 009406 328 TIPCLLPP--------------SGFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374 (535)
Q Consensus 328 ~lp~~~~~--------------~~~~~~-~~~~~~~~~nwk~~~EN~lD~~H~~~vH~~t~~ 374 (535)
++++++++ .++++. ....++++||||+.+||++|+||++++|.++++
T Consensus 157 ~l~e~lg~~~~~ld~~~~~~~~g~le~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 218 (438)
T TIGR03228 157 SLEDFLGDARVFLDMMVAQSPTGELEVLPGKSAYTYAGNWKLQNENGLDGYHVSTVHYNYVA 218 (438)
T ss_pred CHHHHhhhHHHHHHHHhhccCcCceEEecceEEEEeCCchHHHHHhccccccchhhChhhHh
Confidence 34454421 124433 245678999999999999999999999988764
No 6
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=100.00 E-value=3.9e-35 Score=313.99 Aligned_cols=179 Identities=20% Similarity=0.261 Sum_probs=148.9
Q ss_pred cccCCCCCChhhhHHHhccCCCCcccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEE
Q 009406 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCV 255 (535)
Q Consensus 177 ~~~~~~~~s~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~W~~va~s~eL~-~g~~~~~~l~g~~vvv~R~~dG~i~A~ 255 (535)
.++....+|++.++.|++++| .+.|+.||+.++|+ +|++++++++|++|+|+|+++|+++||
T Consensus 15 ~~~~~~Ytd~~~f~~E~~~IF-----------------~~~W~~v~~~selp~~gd~~t~~~~~~~vvv~R~~dG~i~af 77 (433)
T TIGR03229 15 RCKREMFTDPELFDLEMKHIF-----------------EGNWIYLAHESQIPNNNDYYTTYMGRQPIFIARNKDGELNAF 77 (433)
T ss_pred cCChhhcCCHHHHHHHHHHHh-----------------hhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCcEEEE
Confidence 477888999999999999976 56677999999998 689999999999999999999999999
Q ss_pred eecCCCCCCCCCCCc-ccCCeeeccCCCeeEcCCCCccccCCccc----------ccccccccce-EEecCcEEEcCCCC
Q 009406 256 QNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSLPC-FEQEGMIWIWPGDE 323 (535)
Q Consensus 256 ~n~CpHRga~Ls~G~-v~~~~l~CPyHGW~Fd~dG~c~~iP~~~~----------~~~~L~~~pv-~e~~G~IwV~l~~~ 323 (535)
.|+|||||++|+.|. ++.+.|+||||||+||.||+|+++|.... ...+|++++. ..+.|+|||+++++
T Consensus 78 ~N~C~HRga~L~~~~~g~~~~~~CPyHgW~f~~~G~l~~vP~~~~~~~~~~fd~~~~~~L~~v~rve~y~GfIFv~l~~~ 157 (433)
T TIGR03229 78 INACSHRGAMLCRHKRGNKTTYTCPFHGWTFNNSGKLLKVKDPEDAGYPECFNKDGSHDLKKVARFESYRGFLFGSLNPD 157 (433)
T ss_pred eCcCCCCCCCcccccccCCCEEEcCCCCCEecCCcceEeCCCcccccCccccCcHhhcCCccceEEEEECCEEEEEcCCC
Confidence 999999999999865 56679999999999999999999987321 1357999974 55689999999876
Q ss_pred CCCCCCCCCCCC-------------CCceee-eEEEEEeecchhhHhhhcCCCCCCCCcCccccc
Q 009406 324 PPTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374 (535)
Q Consensus 324 ~p~~~lp~~~~~-------------~~~~~~-~~~~~~~~~nwk~~~EN~lD~~H~~~vH~~t~~ 374 (535)
+| ++++++++ .++... ....++++||||+++||++|+||++++|.+++.
T Consensus 158 ~~--~l~e~Lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 220 (433)
T TIGR03229 158 VL--PLEEHLGETAKIIDMIVDQSPDGLEVLRGSSTYTYEGNWKLQAENGADGYHVSAVHWNYAA 220 (433)
T ss_pred CC--CHHHHhhhHHHHHHHHhhcCcCCCeEEeeeEEEEecCchhhhHHhccCcccchhhcccHHH
Confidence 54 34444331 233332 345778999999999999999999999987764
No 7
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.97 E-value=2.8e-30 Score=234.64 Aligned_cols=122 Identities=65% Similarity=1.383 Sum_probs=113.2
Q ss_pred cCCCCCccccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCe
Q 009406 204 SGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGW 283 (535)
Q Consensus 204 ~g~~~~~~~~~~~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW 283 (535)
-|+..++...+++.|++|+++++|++|+++.++++|++++|+|+.+|+++|+.|.|||||++|+.|.++++.|+||||||
T Consensus 4 ~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hgw 83 (129)
T cd04337 4 LGSSLELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKVIEGRIQCPYHGW 83 (129)
T ss_pred cccCccccchhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcEeCCEEEeCCCCC
Confidence 36677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEcCCCCccccCCcccccccccccceEEecCcEEEcCCCCCC
Q 009406 284 EYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (535)
Q Consensus 284 ~Fd~dG~c~~iP~~~~~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (535)
+||.+|+|+.+|..+....+|++||+++++|+||||+++++|
T Consensus 84 ~Fd~tG~~~~~P~~~~~~~~l~~y~v~v~~g~V~V~~~~~~p 125 (129)
T cd04337 84 EYDGDGECTKMPSTKCLNVGIAALPCMEQDGMIWVWPGDDPP 125 (129)
T ss_pred EECCCCCEEeCCcCCCccCCcceEeEEEECCEEEEEcCCCCC
Confidence 999999999999765445689999999999999999987644
No 8
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.96 E-value=1.2e-29 Score=234.64 Aligned_cols=132 Identities=33% Similarity=0.714 Sum_probs=117.6
Q ss_pred ccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeecc
Q 009406 201 LNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCP 279 (535)
Q Consensus 201 ~~~~g~~~~~~~~~~~~W~~va~s~eL~-~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CP 279 (535)
++..||-+|+...+++.|++|+.+++|+ +|+++.++++|.+++|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||
T Consensus 5 ~~~~~~~~~~~~~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~~~~~i~CP 84 (144)
T cd03479 5 LTRVGPGTPMGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRVEECGLRCC 84 (144)
T ss_pred eeecCCCCchhhHhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcccCCEEEcc
Confidence 4456888999999999999999999999 699999999999999999999999999999999999999999989999999
Q ss_pred CCCeeEcCCCCccccCCccc-----ccccccccceEEecCcEEEcCCCCCCCCCCCCC
Q 009406 280 YHGWEYSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL 332 (535)
Q Consensus 280 yHGW~Fd~dG~c~~iP~~~~-----~~~~L~~~pv~e~~G~IwV~l~~~~p~~~lp~~ 332 (535)
||||+|+.+|+|+.+|+.+. ...+|++|+|++++|+|||++++..+++++|++
T Consensus 85 ~Hgw~F~~~G~~~~~P~~~~~~~~~~~~~l~~~~v~~~~G~I~V~~~~~~~~p~~~~~ 142 (144)
T cd03479 85 YHGWKFDVDGQCLEMPSEPPDSQLKQKVRQPAYPVRERGGLVWAYMGPAEEAPEFPRY 142 (144)
T ss_pred CCCcEECCCCCEEECCCCccccCCccccCcceEeEEEECCEEEEECCCCCCCCCCCCC
Confidence 99999999999999997542 246799999999999999999864444445544
No 9
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.96 E-value=1.4e-29 Score=228.12 Aligned_cols=109 Identities=33% Similarity=0.739 Sum_probs=100.1
Q ss_pred CceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccccC
Q 009406 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295 (535)
Q Consensus 216 ~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~dG~c~~iP 295 (535)
..||+|+.+++|+ ++++.++++|+++||||+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|
T Consensus 2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd~~G~~~~iP 80 (123)
T cd03537 2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYDEQGQCVHIP 80 (123)
T ss_pred CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEEeCCEEECCCCCCEECCCCCEEECC
Confidence 5799999999996 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccc---------ccccccccceEEecCcEEEcCCCCCC
Q 009406 296 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (535)
Q Consensus 296 ~~~~---------~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (535)
+.+. ...++++|||+|++|+||||+++..|
T Consensus 81 ~~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv~~g~~~~ 119 (123)
T cd03537 81 GHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQP 119 (123)
T ss_pred CCcccccccccCCcccccccEeEEEECCEEEEEcCCCCc
Confidence 7431 23689999999999999999987554
No 10
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.96 E-value=3.5e-29 Score=228.85 Aligned_cols=115 Identities=30% Similarity=0.839 Sum_probs=105.2
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcCCCC
Q 009406 211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 290 (535)
Q Consensus 211 ~~~~~~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~dG~ 290 (535)
...|++.|++|+.+++|++|..+.++++|++|+|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||||||+||.+|+
T Consensus 11 ~~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd~~G~ 90 (134)
T cd04338 11 EYDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFGGEGK 90 (134)
T ss_pred ccccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCeecCCEEEccCCCCEECCCCC
Confidence 45679999999999999988889999999999999998999999999999999999999999999999999999999999
Q ss_pred ccccCCccc-----ccccccccceEEecCcEEEcCCCCCC
Q 009406 291 CEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (535)
Q Consensus 291 c~~iP~~~~-----~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (535)
|+.+|.... ...+|++|||++++|+|||++++.+|
T Consensus 91 ~~~~P~~~~~~~~~~~~~l~~y~v~~~~G~V~V~~~~~~~ 130 (134)
T cd04338 91 CVKIPQLPADAKIPKNACVKSYEVRDSQGVVWMWMSEATP 130 (134)
T ss_pred EEECCCCCccCCCCcccCcceEeEEEECCEEEEEcCCCCC
Confidence 999997531 23679999999999999999987654
No 11
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.95 E-value=3.2e-28 Score=216.86 Aligned_cols=109 Identities=25% Similarity=0.638 Sum_probs=101.3
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccccCC
Q 009406 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPS 296 (535)
Q Consensus 217 ~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~dG~c~~iP~ 296 (535)
.|++|+.++||++|+++.++++|++++|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||||||+||.+|+|+.+|+
T Consensus 1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~~G~~~~~p~ 80 (115)
T cd03531 1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGGDGRCKAIPY 80 (115)
T ss_pred CcEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCCEECCCCCEEECCc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccc--ccccccccceEEecCcEEEcCCCCCC
Q 009406 297 TQL--RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (535)
Q Consensus 297 ~~~--~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (535)
.+. ...++++||+++++|+|||+++++..
T Consensus 81 ~~~~p~~~~l~~ypv~~~~g~v~v~~~~~~~ 111 (115)
T cd03531 81 ARRVPPLARTRAWPTLERNGQLFVWHDPEGN 111 (115)
T ss_pred ccCCCcccccceEeEEEECCEEEEECCCCCC
Confidence 542 24679999999999999999987643
No 12
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.95 E-value=4.9e-28 Score=225.32 Aligned_cols=131 Identities=21% Similarity=0.362 Sum_probs=115.1
Q ss_pred ccCCCCCChhhhHHHhccCCCCcccccCCCCCcccccc-CceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEE
Q 009406 178 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLK-NFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCV 255 (535)
Q Consensus 178 ~~~~~~~s~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~-~~W~~va~s~eL~-~g~~~~~~l~g~~vvv~R~~dG~i~A~ 255 (535)
.++...+|++.++.|++++| + +.|++||++++|+ +|+++++.+.|.+++|+|+.+|+++|+
T Consensus 2 ~~~~~y~d~~~~~~E~~~if-----------------~~~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~~~g~v~A~ 64 (150)
T cd03545 2 VPYKVFTDRAYFDREQERIF-----------------RGKTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRAEDGSLHAW 64 (150)
T ss_pred CChhhccCHHHHHHHHHhhh-----------------CCCceEEEEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEE
Confidence 35667889999999998875 4 6788999999998 599999999999999999989999999
Q ss_pred eecCCCCCCCCCCCc-ccCCeeeccCCCeeEcCCCCccccCCcc-------------cccccccccceEEecCcEEEcCC
Q 009406 256 QNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------------LRNVKIKSLPCFEQEGMIWIWPG 321 (535)
Q Consensus 256 ~n~CpHRga~Ls~G~-v~~~~l~CPyHGW~Fd~dG~c~~iP~~~-------------~~~~~L~~~pv~e~~G~IwV~l~ 321 (535)
.|+|||||++|+.|. ++++.|+||||||+||.+|+|+.+|..+ ....+|++|+|.+++|+|||+++
T Consensus 65 ~n~CpHrg~~L~~g~~g~~~~i~CP~Hgw~Fdl~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~ 144 (150)
T cd03545 65 VNRCAHRGALVCRERRGNDGSLTCVYHQWAYDLKGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFS 144 (150)
T ss_pred cccCcCCCCEecccccCCCCEEECCCCCCEECCCCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeC
Confidence 999999999999874 4577999999999999999999999742 12468999999999999999998
Q ss_pred CCCC
Q 009406 322 DEPP 325 (535)
Q Consensus 322 ~~~p 325 (535)
++++
T Consensus 145 ~~~~ 148 (150)
T cd03545 145 DEVE 148 (150)
T ss_pred CCCC
Confidence 7653
No 13
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.95 E-value=6.2e-28 Score=221.67 Aligned_cols=113 Identities=30% Similarity=0.797 Sum_probs=102.4
Q ss_pred cccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcC-CCcEEEEeecCCCCCCCCCCCccc-CCeeeccCCCeeEcCCCC
Q 009406 213 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK-DGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGK 290 (535)
Q Consensus 213 ~~~~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~-dG~i~A~~n~CpHRga~Ls~G~v~-~~~l~CPyHGW~Fd~dG~ 290 (535)
.+++.|++|+.++||++|+++.+++.|++++|+|+. +|+++|+.|+|||||++|+.|.+. ++.|+||||||+||.+|+
T Consensus 13 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd~tG~ 92 (138)
T cd03480 13 DWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFDGSGS 92 (138)
T ss_pred CCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCEECCCCC
Confidence 468999999999999999999999999999999986 999999999999999999999875 569999999999999999
Q ss_pred ccccCCccc-------ccccccccceEEecCcEEEcCCCCCC
Q 009406 291 CEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (535)
Q Consensus 291 c~~iP~~~~-------~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (535)
|+.+|.... ...+|++|||++++|+|||++++.++
T Consensus 93 ~~~~P~~~~~g~~~~~~~~~l~~ypv~v~~g~V~V~~~~~~~ 134 (138)
T cd03480 93 CQRIPQAAEGGKAHTSPRACVASLPTAVRQGLLFVWPGEPEN 134 (138)
T ss_pred EEECCCCccccccCCCcccccceEeEEEECCEEEEecCChHh
Confidence 999997531 23679999999999999999986543
No 14
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.95 E-value=1.1e-27 Score=213.52 Aligned_cols=110 Identities=35% Similarity=0.819 Sum_probs=102.0
Q ss_pred ccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccc
Q 009406 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEK 293 (535)
Q Consensus 214 ~~~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~dG~c~~ 293 (535)
+++.|++|+.++||+ |+++.+++.|.+++|+|+.+|+++|++|+|||||++|+.|.+.++.|+||||||+||.+|+|+.
T Consensus 2 ~~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd~~G~~~~ 80 (116)
T cd03532 2 PRNAWYVAAWADELG-DKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFDSDGRCVH 80 (116)
T ss_pred cCCcEEEEEEHHHcC-CCcEEEEECCceEEEEECCCCCEEEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEcCCCCEEe
Confidence 578999999999998 8999999999999999998999999999999999999999999999999999999999999999
Q ss_pred cCCcc--cccccccccceEEecCcEEEcCCCCC
Q 009406 294 MPSTQ--LRNVKIKSLPCFEQEGMIWIWPGDEP 324 (535)
Q Consensus 294 iP~~~--~~~~~L~~~pv~e~~G~IwV~l~~~~ 324 (535)
+|... ....+|++|||++++|+|||++++.+
T Consensus 81 ~p~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~ 113 (116)
T cd03532 81 MPGQERVPAKACVRSYPVVERDALIWIWMGDAA 113 (116)
T ss_pred CCCCCCCCCccccccCCEEEECCEEEEEcCCcc
Confidence 99864 23568999999999999999997643
No 15
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.94 E-value=4.9e-27 Score=215.14 Aligned_cols=112 Identities=31% Similarity=0.633 Sum_probs=100.0
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc--ccCCeeeccCCCeeEcC-
Q 009406 211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST- 287 (535)
Q Consensus 211 ~~~~~~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~--v~~~~l~CPyHGW~Fd~- 287 (535)
...|++.|++|+.+++|++|+++.++++|++++|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||.
T Consensus 8 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r-~~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~ 86 (136)
T cd03548 8 KWGFRNHWYPALFSHELEEGEPKGIQLCGEPILLRR-VDGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLD 86 (136)
T ss_pred ccCcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEe-cCCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCC
Confidence 346899999999999999999999999999999999 69999999999999999999985 46789999999999995
Q ss_pred CCCccccCCccc----ccccccccceEEecCcEEEcCCCC
Q 009406 288 DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDE 323 (535)
Q Consensus 288 dG~c~~iP~~~~----~~~~L~~~pv~e~~G~IwV~l~~~ 323 (535)
+|+|+.+|..+. ...+|++|||++++|+|||++++.
T Consensus 87 tG~~~~~~~~p~~~~~~~~~L~~ypv~~~~g~V~v~~~~~ 126 (136)
T cd03548 87 DGKLVTILANPDDPLIGRTGLKTYPVEEAKGMIFVFVGDG 126 (136)
T ss_pred CccEEEcccCCCccccccCCCceEeEEEECCEEEEEeCCc
Confidence 999998775432 146799999999999999999764
No 16
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.94 E-value=8.3e-27 Score=208.77 Aligned_cols=108 Identities=25% Similarity=0.410 Sum_probs=99.8
Q ss_pred ceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccccC
Q 009406 217 FWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295 (535)
Q Consensus 217 ~W~~va~s~eL~-~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~dG~c~~iP 295 (535)
.|++||+++||+ +|+++++++.|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|
T Consensus 1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l~G~l~~~P 80 (118)
T cd03541 1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKAT 80 (118)
T ss_pred CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcCCCeEEeCC
Confidence 499999999998 5889999999999999999999999999999999999999999989999999999999999999999
Q ss_pred Cccc------ccccccccceEEecCcEEEcCCCCC
Q 009406 296 STQL------RNVKIKSLPCFEQEGMIWIWPGDEP 324 (535)
Q Consensus 296 ~~~~------~~~~L~~~pv~e~~G~IwV~l~~~~ 324 (535)
.... ...+|++++|.+++|+|||+++++.
T Consensus 81 ~~~~~~~~~~~~~~L~~~~~~~~~g~vfv~~~~~~ 115 (118)
T cd03541 81 QATGIQNFNPKELGLVPLKVAEWGPFVLISVDRSL 115 (118)
T ss_pred CcccccCCCHHHCCCceEeEEEECCEEEEEeCCCc
Confidence 8542 3578999999999999999997643
No 17
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.94 E-value=8.3e-27 Score=211.88 Aligned_cols=108 Identities=22% Similarity=0.406 Sum_probs=97.2
Q ss_pred eEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cCCeeeccCCCeeEcCCCCccccC
Q 009406 218 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 295 (535)
Q Consensus 218 W~~va~s~eL~-~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v-~~~~l~CPyHGW~Fd~dG~c~~iP 295 (535)
|++||+++||+ +|+++++.+++.+|+|+|+.||+++||.|+|||||++|+.|.. +++.|+||||||+||.+|+|+.+|
T Consensus 1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~p 80 (129)
T cd03539 1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRDPDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGVP 80 (129)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeecc
Confidence 99999999998 5999999999999999999999999999999999999998764 456899999999999999999999
Q ss_pred Cccc-----------------ccccccccceEEecCcEEEcCCCCCC
Q 009406 296 STQL-----------------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (535)
Q Consensus 296 ~~~~-----------------~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (535)
..+. ...+|++++|.+++|+|||+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 127 (129)
T cd03539 81 FRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHDVE 127 (129)
T ss_pred ccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCCCC
Confidence 7421 24679999999999999999987654
No 18
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.93 E-value=3e-26 Score=207.92 Aligned_cols=114 Identities=23% Similarity=0.405 Sum_probs=100.4
Q ss_pred ccccCceEEeeecCCCCC-CCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cCCeeeccCCCeeEcCCC
Q 009406 212 TRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDG 289 (535)
Q Consensus 212 ~~~~~~W~~va~s~eL~~-g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v-~~~~l~CPyHGW~Fd~dG 289 (535)
.+|.+.|+.||+++||++ |++..+++++.+++|+|+.+|+++|+.|+|||||++|+.|.. +++.|+||||||+||.||
T Consensus 3 ~i~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~~G 82 (128)
T cd03472 3 RVFARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDTAG 82 (128)
T ss_pred chhhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECCCc
Confidence 357889999999999985 777888999999999999999999999999999999999874 446899999999999999
Q ss_pred CccccCCccc--------ccccccccceEEecCcEEEcCCCCCC
Q 009406 290 KCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (535)
Q Consensus 290 ~c~~iP~~~~--------~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (535)
+|+++|..+. ...+|++++|.++.|+|||++++++|
T Consensus 83 ~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~g~vfv~~~~~~~ 126 (128)
T cd03472 83 NLVNVPFEKEAFCDGLDKADWGPLQARVETYKGLIFANWDAEAP 126 (128)
T ss_pred CEEeccCcccccccCCCHHHCCCcceeEeEECCEEEEEcCCCCC
Confidence 9999998532 13468999999999999999987654
No 19
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.93 E-value=3.6e-26 Score=203.09 Aligned_cols=107 Identities=33% Similarity=0.669 Sum_probs=99.4
Q ss_pred eEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cCCeeeccCCCeeEcCCCCccccC
Q 009406 218 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 295 (535)
Q Consensus 218 W~~va~s~eL~-~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v-~~~~l~CPyHGW~Fd~dG~c~~iP 295 (535)
|++||.++||+ +|+.+.+++.|.+++|+|+.+|+++|+.|.|||+|++|+.|.+ .++.|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~P 80 (118)
T cd03469 1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVP 80 (118)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCccEEEEECCCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeCC
Confidence 99999999999 9999999999999999998899999999999999999999998 789999999999999889999999
Q ss_pred Cccc------ccccccccceEEecCcEEEcCCCCC
Q 009406 296 STQL------RNVKIKSLPCFEQEGMIWIWPGDEP 324 (535)
Q Consensus 296 ~~~~------~~~~L~~~pv~e~~G~IwV~l~~~~ 324 (535)
+... ...+|++||+++++|+|||++++..
T Consensus 81 ~~~~~~~~~~~~~~L~~~~v~~~~g~v~v~~~~~~ 115 (118)
T cd03469 81 REEGFPGFDKEKLGLRTVPVEEWGGLIFVNLDPDA 115 (118)
T ss_pred cccccCCCCHHHCCCeEEEEEEECCEEEEEcCCCC
Confidence 8642 2468999999999999999997754
No 20
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.93 E-value=5.2e-26 Score=210.86 Aligned_cols=126 Identities=21% Similarity=0.396 Sum_probs=108.6
Q ss_pred CCChhhhHHHhccCCCCcccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEEeecCCC
Q 009406 183 STSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH 261 (535)
Q Consensus 183 ~~s~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~W~~va~s~eL~-~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpH 261 (535)
.+|++.++.++++++ .+.|++|++.++|+ +|+++++++.|++|+|+|+.+|+++|+.|+|||
T Consensus 5 y~~~~~~~~e~~~i~-----------------~~~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~~~g~v~A~~n~CpH 67 (146)
T cd03538 5 YTDPEIFALEMERLF-----------------GNAWIYVGHESQVPNPGDYITTRIGDQPVVMVRHTDGSVHVLYNRCPH 67 (146)
T ss_pred EcCHHHHHHHHHHHh-----------------hcCCEEEEEHHHCCCCCCEEEEEECCeeEEEEECCCCCEEEEeccCcC
Confidence 467888888887754 67788999999998 699999999999999999999999999999999
Q ss_pred CCCCCCC-Cccc-CCeeeccCCCeeEcCCCCccccCCccc----------cccccccc-ceEEecCcEEEcCCCCCC
Q 009406 262 RACPLHL-GSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSL-PCFEQEGMIWIWPGDEPP 325 (535)
Q Consensus 262 Rga~Ls~-G~v~-~~~l~CPyHGW~Fd~dG~c~~iP~~~~----------~~~~L~~~-pv~e~~G~IwV~l~~~~p 325 (535)
||++|+. |.+. ++.|+||||||+||.||+|+.+|..+. ...+|+++ .|.+++|+|||++++++|
T Consensus 68 rg~~L~~~~~g~~~~~i~CP~Hgw~Fd~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~v~~~~g~ifv~~~~~~~ 144 (146)
T cd03538 68 KGTKIVSDGCGNTGKFFRCPYHAWSFKTDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGAVDIYRGFVFARLSPSGP 144 (146)
T ss_pred CCCEeecccccccCCEEECCCCCCEECCCCCEEECCchhcCCcccCCcchhhCCCCcceeEEEECCEEEEEcCCCCC
Confidence 9999975 4343 568999999999999999999997431 24689999 688899999999987643
No 21
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.93 E-value=1.7e-25 Score=201.54 Aligned_cols=110 Identities=21% Similarity=0.513 Sum_probs=96.4
Q ss_pred CceEEeeecCCCCC-CCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccC-CeeeccCCCeeEcCCCCccc
Q 009406 216 NFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEK 293 (535)
Q Consensus 216 ~~W~~va~s~eL~~-g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~-~~l~CPyHGW~Fd~dG~c~~ 293 (535)
+.|+.||+++||++ |++..+++++.+++|+|+.+|+++|+.|+|||||++|+.|...+ +.|+||||||+||.||+|+.
T Consensus 1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~~ 80 (123)
T cd03535 1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRDEDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLVG 80 (123)
T ss_pred CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEECCCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEee
Confidence 47999999999986 78888889999999999999999999999999999999988664 68999999999999999999
Q ss_pred cCCccc--------ccccccccceEE-ecCcEEEcCCCCCC
Q 009406 294 MPSTQL--------RNVKIKSLPCFE-QEGMIWIWPGDEPP 325 (535)
Q Consensus 294 iP~~~~--------~~~~L~~~pv~e-~~G~IwV~l~~~~p 325 (535)
+|..+. ...+|++|++.+ ++|+|||++++++|
T Consensus 81 ~p~~~~~~~~~~~~~~~~L~~~~~~e~~~g~vfv~l~~~~~ 121 (123)
T cd03535 81 VPAQQEAYGGGFDKSQWGLRPAPNLDSYNGLIFGSLDPKAP 121 (123)
T ss_pred CCCcccccccCcCHHHCCCccceeEEEECCEEEEEeCCCCC
Confidence 997432 236799998654 79999999987643
No 22
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.92 E-value=3.9e-25 Score=199.22 Aligned_cols=108 Identities=19% Similarity=0.358 Sum_probs=95.9
Q ss_pred eEEeeecCCCCC-CCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCccc-CCeeeccCCCeeEcCCCCccccC
Q 009406 218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGKCEKMP 295 (535)
Q Consensus 218 W~~va~s~eL~~-g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~-~~~l~CPyHGW~Fd~dG~c~~iP 295 (535)
|+.||+++||++ |++..+.+.+.+++|+|+.+|+++|+.|+|||||++|+.|... ...|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~p 80 (123)
T cd03536 1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARDKDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGAP 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEECC
Confidence 899999999986 8888889999999999988999999999999999999987654 35799999999999999999999
Q ss_pred Cccc---------ccccccccceEEecCcEEEcCCCCCC
Q 009406 296 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (535)
Q Consensus 296 ~~~~---------~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (535)
..+. ...+|++|+|.+++|+|||+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 119 (123)
T cd03536 81 VEKECMHGKMRTKAELGLHKARVTLYGGLIFATWNIDGP 119 (123)
T ss_pred ccccccccCCCCHHHCCCcceeEEEECCEEEEEeCCCCC
Confidence 7431 23679999999999999999987543
No 23
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.91 E-value=3e-24 Score=184.84 Aligned_cols=96 Identities=27% Similarity=0.530 Sum_probs=90.7
Q ss_pred eEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCccccCC
Q 009406 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (535)
Q Consensus 218 W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~-dG~c~~iP~ 296 (535)
|++++.++||++|+++.+++.|.+++|+|. +|+++|+.|+|||+|++|+.|.+.++.|+||||||+||. +|+|+.+|+
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~-~~~~~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~ 79 (98)
T cd03528 1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRV-DGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPA 79 (98)
T ss_pred CeEEEEhhhcCCCCEEEEEECCeEEEEEEE-CCEEEEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCC
Confidence 899999999999999999999999999997 669999999999999999999888899999999999996 999999887
Q ss_pred cccccccccccceEEecCcEEE
Q 009406 297 TQLRNVKIKSLPCFEQEGMIWI 318 (535)
Q Consensus 297 ~~~~~~~L~~~pv~e~~G~IwV 318 (535)
. ..|++||+++++|.|||
T Consensus 80 ~----~~L~~~~v~~~~g~v~v 97 (98)
T cd03528 80 T----EPLKTYPVKVEDGDVYV 97 (98)
T ss_pred C----CCcceEeEEEECCEEEE
Confidence 3 47999999999999998
No 24
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.90 E-value=5.8e-24 Score=191.75 Aligned_cols=108 Identities=24% Similarity=0.463 Sum_probs=93.8
Q ss_pred eEEeeecCCCCC-CCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cCCeeeccCCCeeEcCCCCccccC
Q 009406 218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 295 (535)
Q Consensus 218 W~~va~s~eL~~-g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v-~~~~l~CPyHGW~Fd~dG~c~~iP 295 (535)
|+.||+.+||++ |+++.+++.|++++|+|+.+|+++|+.|+|||||++|+.|.. +++.|+||||||+||.||+|+.+|
T Consensus 1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~p 80 (123)
T cd03542 1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKVK 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEECC
Confidence 899999999985 889999999999999999999999999999999999998754 456999999999999999999999
Q ss_pred Cccc----------ccccccccce-EEecCcEEEcCCCCCC
Q 009406 296 STQL----------RNVKIKSLPC-FEQEGMIWIWPGDEPP 325 (535)
Q Consensus 296 ~~~~----------~~~~L~~~pv-~e~~G~IwV~l~~~~p 325 (535)
.... ...+|+.+++ +.++|+|||++++++|
T Consensus 81 ~~~~~~y~~~~~~~~~~~L~~~~~~~~~~g~v~~~~~~~~~ 121 (123)
T cd03542 81 DPKTAGYPEGFNCDGSHDLTKVARFESYRGFLFGSLNADVA 121 (123)
T ss_pred cccccCcCcccChhhcCCCccceeEEEECCEEEEEcCCCCC
Confidence 6321 1357888874 5568999999987654
No 25
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.90 E-value=7.8e-24 Score=182.64 Aligned_cols=97 Identities=21% Similarity=0.463 Sum_probs=89.4
Q ss_pred eEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCccccCC
Q 009406 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (535)
Q Consensus 218 W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~-dG~c~~iP~ 296 (535)
|++|+.++||++|+.+.+++.|.+++|+|..+|+++|+.|.|||+|++|+.|.+.++.|+||||||+||. +|.|.. |.
T Consensus 1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~-p~ 79 (98)
T cd03530 1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-PD 79 (98)
T ss_pred CEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCCEEEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCCC-CC
Confidence 8999999999999999999999999999988899999999999999999999999999999999999995 888764 43
Q ss_pred cccccccccccceEEecCcEEEc
Q 009406 297 TQLRNVKIKSLPCFEQEGMIWIW 319 (535)
Q Consensus 297 ~~~~~~~L~~~pv~e~~G~IwV~ 319 (535)
..+|++||+++++|.|||.
T Consensus 80 ----~~~l~~y~v~v~~g~v~v~ 98 (98)
T cd03530 80 ----EGCVRTFPVKVEDGRVYLG 98 (98)
T ss_pred ----CCccceEeEEEECCEEEEC
Confidence 2479999999999999984
No 26
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.90 E-value=1.5e-23 Score=184.14 Aligned_cols=103 Identities=21% Similarity=0.374 Sum_probs=92.5
Q ss_pred eEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCccccCC
Q 009406 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (535)
Q Consensus 218 W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~-dG~c~~iP~ 296 (535)
|++|+.++||++|+++.+++.|.+++++|..+|+++|+.|+|||+|++|+.|.++++.|+||||||+||. +|.|.. |.
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~~-~~ 79 (108)
T cd03474 1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEGGEFRAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGLN-PR 79 (108)
T ss_pred CeEeeehhccCCCceEEEEECCeEEEEEEccCCeEEEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCccccC-CC
Confidence 8999999999999999999999999999989999999999999999999999988889999999999995 676654 32
Q ss_pred cccccccccccceEEecCcEEEcCCCCCC
Q 009406 297 TQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (535)
Q Consensus 297 ~~~~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (535)
..+|++|||++++|.|||++++.++
T Consensus 80 ----~~~L~~~~v~v~~g~v~v~~~~~~~ 104 (108)
T cd03474 80 ----DCRLARYPVKVEGGDILVDTEGVLP 104 (108)
T ss_pred ----CCccceEeEEEECCEEEEeCCCcCc
Confidence 3589999999999999999975443
No 27
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.89 E-value=5.2e-23 Score=179.17 Aligned_cols=99 Identities=21% Similarity=0.403 Sum_probs=92.8
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEc-CCCCccccC
Q 009406 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMP 295 (535)
Q Consensus 217 ~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd-~dG~c~~iP 295 (535)
.|+.++..+||++|..+.+.+.|.+++|+|..+|+++|++|.|||+|++|+.|.+.++.|.||+|||+|| .||+|+..|
T Consensus 1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p 80 (101)
T TIGR02377 1 NWVKACDADDIGREDVARFDHGGRTFAIYRTPDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPP 80 (101)
T ss_pred CcEEEEEHHHcCCCCEEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCC
Confidence 4999999999999999999999999999998799999999999999999999999999999999999999 599999988
Q ss_pred CcccccccccccceEEecCcEEEc
Q 009406 296 STQLRNVKIKSLPCFEQEGMIWIW 319 (535)
Q Consensus 296 ~~~~~~~~L~~~pv~e~~G~IwV~ 319 (535)
.. ..|++||+++++|.|||.
T Consensus 81 ~~----~~l~~y~v~v~~g~v~V~ 100 (101)
T TIGR02377 81 VC----VNLKTYPVKVVDGAVYVD 100 (101)
T ss_pred cc----CCcceEeEEEECCEEEEe
Confidence 63 369999999999999985
No 28
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.88 E-value=6.7e-23 Score=178.81 Aligned_cols=97 Identities=24% Similarity=0.309 Sum_probs=88.1
Q ss_pred eEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCC-CCCCccc----CCeeeccCCCeeEc-CCCCc
Q 009406 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACP-LHLGSVN----EGRIQCPYHGWEYS-TDGKC 291 (535)
Q Consensus 218 W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~-Ls~G~v~----~~~l~CPyHGW~Fd-~dG~c 291 (535)
|++||.++||++|+.+.+++.|++++|+|..+|+++|+.|+|||++++ |+.|.+. ++.|+||||||+|| .+|+|
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~ 80 (103)
T cd03529 1 WQTVCALDDLPPGSGVAALVGDTQIAIFRLPGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRC 80 (103)
T ss_pred CEEEeEHHHCCCCCcEEEEECCEEEEEEEeCCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCc
Confidence 899999999999999999999999999998777999999999999997 7778753 24899999999999 69999
Q ss_pred cccCCcccccccccccceEEecCcEEEc
Q 009406 292 EKMPSTQLRNVKIKSLPCFEQEGMIWIW 319 (535)
Q Consensus 292 ~~iP~~~~~~~~L~~~pv~e~~G~IwV~ 319 (535)
+..|. .+|++||+++++|.|||.
T Consensus 81 ~~~p~-----~~l~~y~v~~~~g~v~v~ 103 (103)
T cd03529 81 LEDED-----VSVATFPVRVEDGEVYVK 103 (103)
T ss_pred cCCCC-----ccEeeEeEEEECCEEEEC
Confidence 98875 479999999999999983
No 29
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.88 E-value=9.4e-23 Score=178.31 Aligned_cols=99 Identities=23% Similarity=0.416 Sum_probs=90.3
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCC-CCCCCCCcccCCe----eeccCCCeeEc-CCCC
Q 009406 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHR-ACPLHLGSVNEGR----IQCPYHGWEYS-TDGK 290 (535)
Q Consensus 217 ~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHR-ga~Ls~G~v~~~~----l~CPyHGW~Fd-~dG~ 290 (535)
.|++|+.++||++|..+.+.+.|.+++|+|..+|+++|+.|+|||+ +.+|+.|.+.++. |+||||||+|| .+|+
T Consensus 1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~ 80 (105)
T TIGR02378 1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGR 80 (105)
T ss_pred CcEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCcc
Confidence 5999999999999999999999999999998789999999999999 8999999876655 99999999999 5999
Q ss_pred ccccCCcccccccccccceEEecCcEEEcC
Q 009406 291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWP 320 (535)
Q Consensus 291 c~~iP~~~~~~~~L~~~pv~e~~G~IwV~l 320 (535)
|+..|. ..|++||+++++|.|||.+
T Consensus 81 ~~~~~~-----~~L~~y~v~v~~g~v~v~~ 105 (105)
T TIGR02378 81 CLEDDS-----GSVRTYEVRVEDGRVYVAL 105 (105)
T ss_pred ccCCCC-----ccEeeEeEEEECCEEEEeC
Confidence 997664 4799999999999999954
No 30
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.87 E-value=1.9e-22 Score=173.18 Aligned_cols=93 Identities=26% Similarity=0.489 Sum_probs=87.1
Q ss_pred EeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCccccCCcc
Q 009406 220 PVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPSTQ 298 (535)
Q Consensus 220 ~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~-dG~c~~iP~~~ 298 (535)
.||.++||++|+++.+++.|.+++|+|. +|+++|+.|+|||+|++|+.|.+.++.|+||||||+||. +|+|+..|..
T Consensus 2 ~v~~~~~l~~g~~~~~~~~~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~- 79 (95)
T cd03478 2 VVCRLSDLGDGEMKEVDVGDGKVLLVRQ-GGEVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPAL- 79 (95)
T ss_pred ceeehhhCCCCCEEEEEeCCcEEEEEEE-CCEEEEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCcc-
Confidence 3789999999999999999999999997 999999999999999999999998999999999999995 9999999874
Q ss_pred cccccccccceEEecCcEE
Q 009406 299 LRNVKIKSLPCFEQEGMIW 317 (535)
Q Consensus 299 ~~~~~L~~~pv~e~~G~Iw 317 (535)
..|++||+++++|.||
T Consensus 80 ---~~l~~~~v~~~~g~i~ 95 (95)
T cd03478 80 ---DSLPCYEVEVEDGRVY 95 (95)
T ss_pred ---CCcceEEEEEECCEEC
Confidence 3699999999999987
No 31
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.87 E-value=2.9e-22 Score=175.87 Aligned_cols=101 Identities=19% Similarity=0.343 Sum_probs=91.1
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccC-CeeeccCCCeeEcC-CCCcccc
Q 009406 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYST-DGKCEKM 294 (535)
Q Consensus 217 ~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~-~~l~CPyHGW~Fd~-dG~c~~i 294 (535)
.|+.+|..+||++|..+.+.+. .+++|+|. +|+++|++|+|||+|++|+.|.+++ +.|+||+|||+||. +|+|+..
T Consensus 2 ~~~~v~~~~~l~~g~~~~~~~~-~~i~v~~~-~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~ 79 (106)
T PRK09965 2 NRIYACPVADLPEGEALRVDTS-PVIALFNV-GGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCL 79 (106)
T ss_pred CcEEeeeHHHcCCCCeEEEeCC-CeEEEEEE-CCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCC
Confidence 3899999999999999888877 88999995 9999999999999999999999887 79999999999995 9999987
Q ss_pred CCcccccccccccceEEecCcEEEcCCCC
Q 009406 295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (535)
Q Consensus 295 P~~~~~~~~L~~~pv~e~~G~IwV~l~~~ 323 (535)
|. ..+|++|++++++|.|||.+...
T Consensus 80 p~----~~~l~~y~v~v~~g~v~v~~~~~ 104 (106)
T PRK09965 80 PA----TDPLRTYPVHVEGGDIFIDLPEA 104 (106)
T ss_pred CC----CCCcceEeEEEECCEEEEEccCC
Confidence 75 35799999999999999988543
No 32
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.83 E-value=7.1e-21 Score=163.36 Aligned_cols=93 Identities=31% Similarity=0.661 Sum_probs=79.4
Q ss_pred ceEEeeecCCCCC-CCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc--ccCCeeeccCCCeeEcCC-CCcc
Q 009406 217 FWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYSTD-GKCE 292 (535)
Q Consensus 217 ~W~~va~s~eL~~-g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~--v~~~~l~CPyHGW~Fd~d-G~c~ 292 (535)
.|++|+.++||++ |+...+.+ +...++++..+|+++|+.|+|||+|++|+.|. .+++.|+||||||+||.+ |+|+
T Consensus 1 ~W~~v~~~~el~~~~~~~~~~~-~~~~v~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~ 79 (97)
T PF00355_consen 1 QWVPVCRSSELPEPGDVKRVDV-GGKLVLVRRSDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECV 79 (97)
T ss_dssp SEEEEEEGGGSHSTTEEEEEEE-TTEEEEEEETTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEE
T ss_pred CEEEeeEHHHCCCCCCEEEEEc-CCcEEEEEeCCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEe
Confidence 5999999999998 88889999 55455555689999999999999999999994 456899999999999965 9999
Q ss_pred ccCCcccccccccccceEEecC
Q 009406 293 KMPSTQLRNVKIKSLPCFEQEG 314 (535)
Q Consensus 293 ~iP~~~~~~~~L~~~pv~e~~G 314 (535)
.+|+.. .++.||++++++
T Consensus 80 ~~p~~~----~l~~~~v~ve~~ 97 (97)
T PF00355_consen 80 GGPAPR----PLPLYPVKVEGD 97 (97)
T ss_dssp ESTTCS----BSTEEEEEEETT
T ss_pred cCCCCC----CcCCCCeEEeCC
Confidence 999853 799999998764
No 33
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.83 E-value=1.4e-20 Score=164.97 Aligned_cols=98 Identities=28% Similarity=0.616 Sum_probs=91.4
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCC-CCCCCCCCcccCC----eeeccCCCeeEc-CCCC
Q 009406 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH-RACPLHLGSVNEG----RIQCPYHGWEYS-TDGK 290 (535)
Q Consensus 217 ~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpH-Rga~Ls~G~v~~~----~l~CPyHGW~Fd-~dG~ 290 (535)
+|++||..+||++|..+.+.+.|.+|+|||..+|++||++|.||| ++.+|+.|.+.+. .|.||+|+|.|| .+|+
T Consensus 1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~ 80 (104)
T PF13806_consen 1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGE 80 (104)
T ss_dssp SEEEEEETTTSCTTSEEEEEETTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTE
T ss_pred CeeEeccHHHCCCCCcEEEEECCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcC
Confidence 599999999999999999999999999999889999999999999 8999999998776 999999999999 5999
Q ss_pred ccccCCcccccccccccceEEecCcEEEc
Q 009406 291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIW 319 (535)
Q Consensus 291 c~~iP~~~~~~~~L~~~pv~e~~G~IwV~ 319 (535)
|+..|. .++++|||++++|.|||.
T Consensus 81 ~~~~~~-----~~l~~ypvrv~~g~V~V~ 104 (104)
T PF13806_consen 81 CLEDPD-----VSLRTYPVRVEDGQVYVE 104 (104)
T ss_dssp ESSECS-----EBSBEEEEEECTTEEEEE
T ss_pred cCCCCC-----CcEEeEEEEEECCEEEEC
Confidence 998654 579999999999999984
No 34
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.82 E-value=3.8e-20 Score=159.38 Aligned_cols=95 Identities=25% Similarity=0.468 Sum_probs=87.8
Q ss_pred eEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCccccCC
Q 009406 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (535)
Q Consensus 218 W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~-dG~c~~iP~ 296 (535)
|++++..++|++|+.+.+.+.+.+++|+|..+|+++|+.|.|||+|++|..|.+.++.|+||+|||.||. ||+|+..|+
T Consensus 1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~ 80 (98)
T cd03467 1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPA 80 (98)
T ss_pred CEEeeeccccCCCceEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCC
Confidence 8999999999999999999999999999988899999999999999999999888899999999999997 999999987
Q ss_pred cccccccccccceEEec-CcE
Q 009406 297 TQLRNVKIKSLPCFEQE-GMI 316 (535)
Q Consensus 297 ~~~~~~~L~~~pv~e~~-G~I 316 (535)
...|++||+++.+ +.|
T Consensus 81 ----~~~l~~~~v~~~~~~~~ 97 (98)
T cd03467 81 ----PRPLPKYPVKVEGDGVV 97 (98)
T ss_pred ----CCCcCEEEEEEeCCceE
Confidence 3579999999984 444
No 35
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.82 E-value=3.8e-20 Score=163.29 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=87.7
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEc-CCCcEEEEeecCCCCCCC-CCCCcccC---C-eeeccCCCeeEc-CCC
Q 009406 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACP-LHLGSVNE---G-RIQCPYHGWEYS-TDG 289 (535)
Q Consensus 217 ~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~-~dG~i~A~~n~CpHRga~-Ls~G~v~~---~-~l~CPyHGW~Fd-~dG 289 (535)
.|+.||..+||++|..+.+.+.|.+++|+|. .+|+++|++|.|||.+++ |+.|.+.+ + .|+||+|||+|| .||
T Consensus 3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG 82 (108)
T PRK09511 3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDG 82 (108)
T ss_pred cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCc
Confidence 4999999999999999999999999999995 589999999999999985 99998742 2 499999999999 699
Q ss_pred CccccCCcccccccccccceEEecCcEEEc
Q 009406 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIW 319 (535)
Q Consensus 290 ~c~~iP~~~~~~~~L~~~pv~e~~G~IwV~ 319 (535)
+|+..|. ..|++|||++++|.|||.
T Consensus 83 ~~~~~~~-----~~l~typV~ve~g~V~v~ 107 (108)
T PRK09511 83 LCMEDEQ-----FSVKHYDARVKDGVVQLR 107 (108)
T ss_pred ccCCCCC-----ccEeeEeEEEECCEEEEe
Confidence 9997654 479999999999999984
No 36
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.81 E-value=9.5e-20 Score=160.27 Aligned_cols=101 Identities=23% Similarity=0.436 Sum_probs=90.4
Q ss_pred CceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCC-eeeccCCCeeEc-CCCCccc
Q 009406 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG-RIQCPYHGWEYS-TDGKCEK 293 (535)
Q Consensus 216 ~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~-~l~CPyHGW~Fd-~dG~c~~ 293 (535)
..|+.+|..++|+++..+.+.+.+..+++++..+|+++|+.|+|||.+++|+.|.+.++ .|+||.|+|.|| .||+|+.
T Consensus 3 ~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~ 82 (106)
T COG2146 3 MNWIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLE 82 (106)
T ss_pred CceEEEEehHhcCCCCceEEEecCCEEEEEEecCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceec
Confidence 47999999999999888899884436777777899999999999999999999999886 599999999999 6999999
Q ss_pred cCCcccccccccccceEEecCcEEEcC
Q 009406 294 MPSTQLRNVKIKSLPCFEQEGMIWIWP 320 (535)
Q Consensus 294 iP~~~~~~~~L~~~pv~e~~G~IwV~l 320 (535)
.|+.. .|++||+++.+|.|||.+
T Consensus 83 ~p~~~----~l~~y~vrve~g~v~v~~ 105 (106)
T COG2146 83 PPAGK----TLKTYPVRVEGGRVFVDL 105 (106)
T ss_pred CCCCC----ceeEEeEEEECCEEEEec
Confidence 99753 299999999999999976
No 37
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.80 E-value=1.5e-19 Score=154.85 Aligned_cols=87 Identities=24% Similarity=0.387 Sum_probs=79.0
Q ss_pred eeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccccCCcccc
Q 009406 221 VAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300 (535)
Q Consensus 221 va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~dG~c~~iP~~~~~ 300 (535)
+|..+||++|+.+.+.+.|++++|+|+.+|+++|+.|+|||+|++|+.|.. ++.|.||||||+||.||+|+..|..
T Consensus 2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~-~~~i~CP~Hg~~Fd~~G~~~~~Pa~--- 77 (91)
T cd03477 2 ITDIEDLAPGEGGVVNIGGKRLAVYRDEDGVLHTVSATCTHLGCIVHWNDA-EKSWDCPCHGSRFSYDGEVIEGPAV--- 77 (91)
T ss_pred ccchhhcCCCCeEEEEECCEEEEEEECCCCCEEEEcCcCCCCCCCCcccCC-CCEEECCCCCCEECCCCcEeeCCCC---
Confidence 578899999999999999999999999999999999999999999998875 5799999999999999999999874
Q ss_pred cccccccceEEe
Q 009406 301 NVKIKSLPCFEQ 312 (535)
Q Consensus 301 ~~~L~~~pv~e~ 312 (535)
..|++|++.-.
T Consensus 78 -~~l~~y~v~~~ 88 (91)
T cd03477 78 -SGLKPADDAPI 88 (91)
T ss_pred -CCCCeeEeecc
Confidence 47889988654
No 38
>cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Stenotrophomonas maltophilia dicamba O-demethylase (DMO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.74 E-value=1.9e-17 Score=156.29 Aligned_cols=171 Identities=20% Similarity=0.218 Sum_probs=111.2
Q ss_pred EEEeecchhhHhhhcCCCCCCCCcCccccccCCCC---CceeeeecCCCCC-----------Ccc-cc-C--CCceeEEc
Q 009406 345 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV---PSLVKFLTPASGL-----------QGY-WD-P--YPIDMEFR 406 (535)
Q Consensus 345 ~~~~~~nwk~~~EN~lD~~H~~~vH~~t~~~~~~v---p~~v~~~~~~~~~-----------~g~-~~-~--~~~~~~f~ 406 (535)
.++++|||+.++||++|++|++|||.++++..... +...++.....+. ..+ +. . ......|.
T Consensus 5 ~~~~~~n~~~~~EN~~D~~H~~fvH~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (196)
T cd08878 5 YRHIDCNWLQVVENLMDPSHVSFVHRSSIGRDAADLPSGPPKEVEEVPRGVTYRRWREDEDPPPFGFEGPVDRWRVIEFL 84 (196)
T ss_pred cEEecCCcEEEehhCccccchhhhChhhhCccccccccCCCceEEEeCCEEEEEEEecCCCCCCCCCCCCccEEEEEEEE
Confidence 46789999999999999999999999999864321 1111111000000 000 00 0 01234688
Q ss_pred CceeEEEEeeecCCCCcCCCCcccccceeEEEEEEecCCCCeeEeeeeeeccchhhc--cCchhHHHHHHHHHHHHHhhH
Q 009406 407 PPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVL--KHVPFMQYLWRHFAEQVLNED 484 (535)
Q Consensus 407 ~P~~v~~~~g~~~pg~~~~~~~~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~~--~~~p~~~~~~~~f~~~V~~ED 484 (535)
.|+++........+|. ......+..++.++|+++++|++++.+.+++.... ...+.+...+..+...|+.||
T Consensus 85 ~P~~~~~~~~~~~~~~------~~~~~~~~~~~~~tPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~eD 158 (196)
T cd08878 85 LPNVLLIDPGVAPAGT------REQGVRMRVTHWITPIDETTTHYFWFFVRNFAPDEEKKDDEELTETLRSGLSGAFNED 158 (196)
T ss_pred CCEEEEEecccccCCc------CCCcceEEEEEEEccCCCCeEEEEEEeccCCCCCccccCCHHHHHHHHHHhhhhchhH
Confidence 8988765544333322 11122456678899999999999998887764321 011233444455778899999
Q ss_pred HHHHHHHhhhccCCCCcCCCCccCChHHHHHHHHHHHH
Q 009406 485 LRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 522 (535)
Q Consensus 485 ~~IlE~qQ~~l~~g~~~~~l~~~aD~~~v~yRrwl~~l 522 (535)
+.|+|+||+++... ...+.+..+|+++++||||++++
T Consensus 159 ~~i~e~q~~~~~~~-~~~~~l~~~D~~~~~~Rr~l~~~ 195 (196)
T cd08878 159 KEAVEAQQRIIDRD-PTREHLGLSDKGIVRFRRLLRRL 195 (196)
T ss_pred HHHHHHHHHHHhcC-CcccccccccHHHHHHHHHHHHh
Confidence 99999999998764 23356677999999999999865
No 39
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.74 E-value=7.9e-18 Score=152.47 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=85.3
Q ss_pred EeeecCCCCCCCeEEEEECC--eeEEEEEcC---------CCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcC-
Q 009406 220 PVAFSTDLKDDTMVPFDCFE--EPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST- 287 (535)
Q Consensus 220 ~va~s~eL~~g~~~~~~l~g--~~vvv~R~~---------dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~- 287 (535)
.||..++|++|+.+.+++.+ .+++|+|.. +|+++|++|+|||+|++|+.|. +++.|.||+|||+||.
T Consensus 5 ~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~-~~~~v~CP~Hg~~Fdl~ 83 (126)
T cd03476 5 KVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP-SNKTFVCPCHFSQFDPA 83 (126)
T ss_pred EEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc-cCCEEEccCcCCEEeCC
Confidence 68999999999999999887 899999974 7999999999999999999987 7789999999999995
Q ss_pred -CCCccccCCcccccccccccceEEe--cCcEEEc
Q 009406 288 -DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW 319 (535)
Q Consensus 288 -dG~c~~iP~~~~~~~~L~~~pv~e~--~G~IwV~ 319 (535)
+|+|+..|. ...|++||++++ +|.|||.
T Consensus 84 tgG~~~~gPa----~~~L~~ypv~ve~~~g~V~~~ 114 (126)
T cd03476 84 RGGQMVSGQA----TQNLPQIVLEYDEASGDIYAV 114 (126)
T ss_pred CCCeEEcCCC----CCCCCeEEEEEECCCCEEEEE
Confidence 579998775 358999999999 9999983
No 40
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.70 E-value=7.3e-17 Score=145.72 Aligned_cols=90 Identities=18% Similarity=0.352 Sum_probs=73.8
Q ss_pred CCCeEEEE-ECCeeEEEEEcCCCcE--EEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccccCCccccccccc
Q 009406 229 DDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIK 305 (535)
Q Consensus 229 ~g~~~~~~-l~g~~vvv~R~~dG~i--~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~dG~c~~iP~~~~~~~~L~ 305 (535)
+|++..++ ..+.+.++.+..+|++ +|++|+|||+|++|..+.. ++.|+||+|||+||.+|+++..|. ...|+
T Consensus 22 ~~~~~~~~~~~~~~~Ilv~~~dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd~tG~~~~gPa----~~~L~ 96 (126)
T cd03471 22 PGDRSLVQGLKGDPTYLIVEEDKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDATGKVVRGPA----PLSLA 96 (126)
T ss_pred CCCeEEEEEecCCeEEEEEeCCCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEECCCCCEecCCC----CCCCc
Confidence 67777776 4455555555579977 8999999999999998764 579999999999999999998876 35799
Q ss_pred ccceEEecCcEEEcCCCC
Q 009406 306 SLPCFEQEGMIWIWPGDE 323 (535)
Q Consensus 306 ~~pv~e~~G~IwV~l~~~ 323 (535)
.|++++.+|.|||.+..+
T Consensus 97 ~y~V~vedg~I~V~~~~~ 114 (126)
T cd03471 97 LVHATVDDDKVVLSPWTE 114 (126)
T ss_pred eEeEEEECCEEEEEECcc
Confidence 999999999999965443
No 41
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.64 E-value=7.4e-16 Score=140.08 Aligned_cols=94 Identities=20% Similarity=0.348 Sum_probs=81.6
Q ss_pred EeeecCCCCCCCeEEEEECC--eeEEEEEc---------CCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcCC
Q 009406 220 PVAFSTDLKDDTMVPFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 288 (535)
Q Consensus 220 ~va~s~eL~~g~~~~~~l~g--~~vvv~R~---------~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~d 288 (535)
.+|..+||++|+++.+.+.+ .+++++|. .+|+++|++|.|||.|++|+.+. +++.|.||+|||+||.+
T Consensus 8 ~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~-~~~~i~CP~Hga~Fdl~ 86 (129)
T TIGR02694 8 RVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA-DNKTFNCPCHFSVFDPE 86 (129)
T ss_pred EEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc-CCCEEEcCCCCCEECCC
Confidence 68999999999999999865 47888884 59999999999999999999875 67899999999999964
Q ss_pred --CCccccCCcccccccccccceEEe-cCcEEE
Q 009406 289 --GKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI 318 (535)
Q Consensus 289 --G~c~~iP~~~~~~~~L~~~pv~e~-~G~IwV 318 (535)
|+|+..|. ...|++||+++. +|.||.
T Consensus 87 tgG~~~~gP~----~~~L~~y~v~v~~~G~V~~ 115 (129)
T TIGR02694 87 KGGQQVWGQA----TQNLPQIVLRVADNGDIFA 115 (129)
T ss_pred CCCcEECCCC----CCCCCeeEEEEECCCeEEE
Confidence 69998775 357999999997 589984
No 42
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te
Probab=99.62 E-value=7.6e-15 Score=137.68 Aligned_cols=161 Identities=20% Similarity=0.185 Sum_probs=99.6
Q ss_pred EEEEeecchhhHhhhcCCCCCCCCcCccccccCC-----CCCceeeeecC----CCCCCcccc-------------CCCc
Q 009406 344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGW-----SVPSLVKFLTP----ASGLQGYWD-------------PYPI 401 (535)
Q Consensus 344 ~~~~~~~nwk~~~EN~lD~~H~~~vH~~t~~~~~-----~vp~~v~~~~~----~~~~~g~~~-------------~~~~ 401 (535)
..++++||||+++||++|+||++++|+++++... ..+.... ..+ .......|. ....
T Consensus 3 ~~~~~~~NWK~~~En~~E~YH~~~~H~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (188)
T cd00680 3 YEYEVDCNWKLAVENFLECYHVPTVHPDTLATGLPLPLLFGDHYRV-DDTGEGPGEGLSRHWGDGKGPQSALPGLKPGGY 81 (188)
T ss_pred eEEEeccCceEehhhccccccccccChhhhccccccCcccCCceEE-EeccCCCCChhhcccchhhhcccccccccccCe
Confidence 3578999999999999999999999999987421 1111111 110 000000010 0112
Q ss_pred eeEEcCceeEEEEeeecCCCCcCCCCcccccceeEEEEEEecCCCCeeEeeeeeeccchhh-ccCchhHHHHHHHHHHHH
Q 009406 402 DMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASV-LKHVPFMQYLWRHFAEQV 480 (535)
Q Consensus 402 ~~~f~~P~~v~~~~g~~~pg~~~~~~~~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~-~~~~p~~~~~~~~f~~~V 480 (535)
...+..|++++... .....++.++|+++++|++.++++...... ..........+..+...|
T Consensus 82 ~~~~~fPn~~~~~~-----------------~~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 144 (188)
T cd00680 82 LYLYLFPNLMIGLY-----------------PDSLQVQQFVPIGPNKTRLEVRLYRPKDEDAREEFDAELESLAGILRQV 144 (188)
T ss_pred EEEEECCcEeeeec-----------------CCEEEEEEEEecCCCcEEEEEEEEEecccccchhhHHHHHHhHHHHHHH
Confidence 23456777765432 123456778999999999999887654321 011111111122356889
Q ss_pred HhhHHHHHHHHhhhccCCCCcCCCCccCChHHHHHHHHHHHH
Q 009406 481 LNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 522 (535)
Q Consensus 481 ~~ED~~IlE~qQ~~l~~g~~~~~l~~~aD~~~v~yRrwl~~l 522 (535)
+.||+.++|+||+++.++................|++|+++.
T Consensus 145 ~~ED~~~~e~~Q~gl~s~~~~~~~l~~~E~~i~~f~~~~~~~ 186 (188)
T cd00680 145 LDEDIELCERIQRGLRSGAFRGGPLSPLEEGIRHFHRWLRRA 186 (188)
T ss_pred HHHHHHHHHHHhccccCCcCCCCCCCcccccHHHHHHHHHHh
Confidence 999999999999999987544433334457888999997754
No 43
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.61 E-value=1.1e-15 Score=133.55 Aligned_cols=72 Identities=15% Similarity=0.342 Sum_probs=66.1
Q ss_pred cCCCCCCCeEEEEE-CCeeEEEEEcCCCcEEEEeecCCCCCCCCCCC--cccCCeeeccCCCeeEc-CCCCccccCC
Q 009406 224 STDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYS-TDGKCEKMPS 296 (535)
Q Consensus 224 s~eL~~g~~~~~~l-~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G--~v~~~~l~CPyHGW~Fd-~dG~c~~iP~ 296 (535)
..+|++|..+.+.+ .|.+|+|+|. +|+++|+.|+|||++++|+.| .++++.|+||+|||+|| .+|+++..|.
T Consensus 14 l~eL~~G~~~~v~v~~g~~I~V~~~-~G~~~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~ 89 (107)
T cd03473 14 VANLKEGINFFRNKEDGKKYIIYKS-KSELKACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPD 89 (107)
T ss_pred HhcCCCCceEEEEecCCcEEEEEEE-CCEEEEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCc
Confidence 47899999999999 9999999995 999999999999999999994 58889999999999999 6999998665
No 44
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.60 E-value=4e-15 Score=134.87 Aligned_cols=92 Identities=21% Similarity=0.321 Sum_probs=81.3
Q ss_pred ecCCCCCCCeEEEEECCeeEEEEEcC----------------------------CCcEEEEeecCCCCCCCCCCCcccCC
Q 009406 223 FSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------DGIPGCVQNTCAHRACPLHLGSVNEG 274 (535)
Q Consensus 223 ~s~eL~~g~~~~~~l~g~~vvv~R~~----------------------------dG~i~A~~n~CpHRga~Ls~G~v~~~ 274 (535)
..++|++|+.+.+...|.+|+|+|.. +|+++|+.+.|||.||.+..+.+.++
T Consensus 5 dl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~~~~ 84 (126)
T cd03470 5 DLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAGDYG 84 (126)
T ss_pred EhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccCCCC
Confidence 46789999999999999999999953 67999999999999999988766778
Q ss_pred eeeccCCCeeEcCCCCccccCCcccccccccccceEEec-CcEEE
Q 009406 275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE-GMIWI 318 (535)
Q Consensus 275 ~l~CPyHGW~Fd~dG~c~~iP~~~~~~~~L~~~pv~e~~-G~IwV 318 (535)
.|.||+|||+||.+|+.+..|. +..|+.||++..+ +.|+|
T Consensus 85 ~~~CPcHgs~Fdl~G~~~~gPa----~~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 85 GFFCPCHGSHYDASGRIRKGPA----PLNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred EEEecCcCCEECCCCeEecCCC----CCCCCeeeEEEecCCEEEe
Confidence 9999999999999999998876 4589999998876 67765
No 45
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.53 E-value=2.6e-13 Score=129.94 Aligned_cols=163 Identities=12% Similarity=0.069 Sum_probs=96.8
Q ss_pred EEEEEeecchhhHhhhcCCCCCCCCcCccccccCCCC-------C--c-eeeeecCCC---CCCccccC---------CC
Q 009406 343 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV-------P--S-LVKFLTPAS---GLQGYWDP---------YP 400 (535)
Q Consensus 343 ~~~~~~~~nwk~~~EN~lD~~H~~~vH~~t~~~~~~v-------p--~-~v~~~~~~~---~~~g~~~~---------~~ 400 (535)
...++++||||+++||++|+||++++|++|++..... . . ......+.. ........ ..
T Consensus 3 ~~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (190)
T cd08885 3 REEEVWDTNWKVLAENFMEGYHLPGLHPGTLHPFMPAELSYFRPEDGRGFTRHKGTKHFNETIEPAHPPNPGLTEEWRRR 82 (190)
T ss_pred eeeeeccCCchhhHhhcCccccccccccchhhccCchhhcccccCCCcceeeeecccccccCccccCCCCCCCChhhhcc
Confidence 3467899999999999999999999999988642110 0 0 000001100 00000000 00
Q ss_pred ceeEEcCceeEEEEeeecCCCCcCCCCcccccceeEEEEEEecCCCCeeEeeeeeeccchhhc-cCchhHHHHHHHHHHH
Q 009406 401 IDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVL-KHVPFMQYLWRHFAEQ 479 (535)
Q Consensus 401 ~~~~f~~P~~v~~~~g~~~pg~~~~~~~~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~~-~~~p~~~~~~~~f~~~ 479 (535)
....+..||+++... | ....++.+.|+++++|++.+.++....... .........+..+...
T Consensus 83 ~~~~~iFPN~~i~~~----~-------------~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (190)
T cd08885 83 LVLFAIFPTHLLALT----P-------------DYVWWLSLLPEGAGRVRVRWGVLVAPEAADDPEAAEYIAELKALLDA 145 (190)
T ss_pred eEEEEECCcEEEEec----C-------------CeEEEEEEEecCCCeEEEEEEEEEcchhcccchhHHHHHHHHHHHHH
Confidence 112345677765432 1 123455679999999999887664322110 0111112223335578
Q ss_pred HHhhHHHHHHHHhhhccCCCCcCCCCccCChHHHHHHHHHHHH
Q 009406 480 VLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 522 (535)
Q Consensus 480 V~~ED~~IlE~qQ~~l~~g~~~~~l~~~aD~~~v~yRrwl~~l 522 (535)
|+.||..++|.+|+|+.++..........+..+..|.+|+++.
T Consensus 146 v~~ED~~~~e~~Q~Gl~S~~~~~g~l~~~E~~i~~fh~~l~~~ 188 (190)
T cd08885 146 INDEDRLVVEGVQRGLGSRFAVPGRLSHLERPIWQFQRYLASR 188 (190)
T ss_pred HHHHHHHHHHHhcccccCCCCCCCCCCcccccHHHHHHHHHHH
Confidence 9999999999999999986543322334578888999997753
No 46
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.48 E-value=1.1e-13 Score=132.54 Aligned_cols=88 Identities=20% Similarity=0.384 Sum_probs=73.7
Q ss_pred CCCCeEEEE-ECCeeEEEEEcCCCcE--EEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccccCCcccccccc
Q 009406 228 KDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKI 304 (535)
Q Consensus 228 ~~g~~~~~~-l~g~~vvv~R~~dG~i--~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~dG~c~~iP~~~~~~~~L 304 (535)
++|++..+. +.|.+.++++..+|++ +|++++|||.||+|..+.. ++.|.||+|||+||.+|+++..|. ...|
T Consensus 73 ~~g~~~~v~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~gc~l~~~~~-~~~~~CP~Hgs~Fd~tG~~~~gPa----~~~L 147 (178)
T PRK13474 73 PAGDRSLVQGLKGDPTYLVVEEDGTIASYGINAVCTHLGCVVPWNSG-ENKFQCPCHGSQYDATGKVVRGPA----PLSL 147 (178)
T ss_pred CCCCcEEEEEcCCCeEEEEEeCCCEEEEEEecCCCCCCCCccccccC-CCEEEecCcCCEECCCCCCccCCC----CCCC
Confidence 678777776 6777744444569999 6779999999999998874 469999999999999999998876 3589
Q ss_pred cccceEEecCcEEEcC
Q 009406 305 KSLPCFEQEGMIWIWP 320 (535)
Q Consensus 305 ~~~pv~e~~G~IwV~l 320 (535)
+.|++++++|.|+|.+
T Consensus 148 ~~y~v~v~~g~v~v~~ 163 (178)
T PRK13474 148 ALVHVTVEDDKVLFSP 163 (178)
T ss_pred CeEeEEEECCEEEEEE
Confidence 9999999999999854
No 47
>cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.47 E-value=7.1e-13 Score=125.78 Aligned_cols=161 Identities=18% Similarity=0.181 Sum_probs=96.9
Q ss_pred EEEEeecchhhHhhhcCCCCCCCCcCccccccCCCCCce-eeeecCCC--------------CCCccccCC-Cc-eeEEc
Q 009406 344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSL-VKFLTPAS--------------GLQGYWDPY-PI-DMEFR 406 (535)
Q Consensus 344 ~~~~~~~nwk~~~EN~lD~~H~~~vH~~t~~~~~~vp~~-v~~~~~~~--------------~~~g~~~~~-~~-~~~f~ 406 (535)
..++++||||+++||++|+||++++|++|++........ .....+.. ....-|... .. ...+.
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (185)
T cd08887 4 RRFDVAANWKLALDGFLEGYHFKVLHKNTIAPYFYDNLSVYDAFGPHSRIVFPRKSIESLRDLPEDEWDLRRHLTVIYTL 83 (185)
T ss_pred eeeecCCCceEehhhcccccccchhchhhhcccccCCceEEeccCCeeeeecchhhHHHHhcCChhHCCccCCeeEEEEE
Confidence 467899999999999999999999999998642110100 00000000 000001100 00 12234
Q ss_pred CceeEEEEeeecCCCCcCCCCcccccceeEEEEEEecCCCCeeEeeeeeeccchhhccCc-hhHHHHHHHHH-HHHHhhH
Q 009406 407 PPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHV-PFMQYLWRHFA-EQVLNED 484 (535)
Q Consensus 407 ~P~~v~~~~g~~~pg~~~~~~~~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~~~~~-p~~~~~~~~f~-~~V~~ED 484 (535)
.|++++... .....+..+.|.++++|.+.+.++.......... ......+ .+. ..|..||
T Consensus 84 FPN~~i~~~-----------------~~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~ED 145 (185)
T cd08887 84 FPNVSLLVQ-----------------PDHLEIIQIEPGSPDRTRVTVYLLIPPPPDTEEARAYWDKNW-DFLMAVVLDED 145 (185)
T ss_pred CCceEEEec-----------------CCeEEEEEEEcCCCCceEEEEEEEecCCCCcHHHHHHHHHHH-HHHHhhhHHHH
Confidence 677665432 1124466679999999999887765322111111 1111222 233 6889999
Q ss_pred HHHHHHHhhhccCCCCcCCCCccCChHHHHHHHHHHHH
Q 009406 485 LRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 522 (535)
Q Consensus 485 ~~IlE~qQ~~l~~g~~~~~l~~~aD~~~v~yRrwl~~l 522 (535)
..++|.+|+|+.++...+......+..+..|++|+++.
T Consensus 146 ~~~~e~~Q~Gl~s~~~~~~~l~~~E~~i~~fh~~~~~~ 183 (185)
T cd08887 146 FEVAEEIQRGLASGANDHLTFGRNESALQHFHRWLERA 183 (185)
T ss_pred HHHHHHHhhhhhcCCCCceEeecCCHHHHHHHHHHHHH
Confidence 99999999999987654434446678888999998754
No 48
>cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of plant choline monooxygenase and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-
Probab=99.46 E-value=1.5e-12 Score=123.72 Aligned_cols=160 Identities=15% Similarity=0.163 Sum_probs=96.4
Q ss_pred EEEEEeecchhhHhhhcCCCCCCCCcCccccccCCCCCceee-------eecCCC-CCCccccCCC--ceeEEcCceeEE
Q 009406 343 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVK-------FLTPAS-GLQGYWDPYP--IDMEFRPPCMVL 412 (535)
Q Consensus 343 ~~~~~~~~nwk~~~EN~lD~~H~~~vH~~t~~~~~~vp~~v~-------~~~~~~-~~~g~~~~~~--~~~~f~~P~~v~ 412 (535)
...+++++|||+++||++|+||++++|++++........... ...+.. .....+.... ....+..|++++
T Consensus 3 ~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~i 82 (175)
T cd08883 3 RREYVIECNWKVYVDNYLEGYHVPFAHPGLAAVLDYATYRTELFEYVSLQSAPARAEEGSFFYRLGNAALYAWIYPNLML 82 (175)
T ss_pred cEEeeeecCceEEehhcCCcccCcccchhHHhhcccCceEEEEcCcEEEEEecccCCCCccccccCcCeEEEEECCCEee
Confidence 346788999999999999999999999999854211000000 000000 0011121111 123456788776
Q ss_pred EEeeecCCCCcCCCCcccccceeEEEEEEecCCCCeeEeeeeeeccchhhccCchhHHHHHHHHHHHHHhhHHHHHHHHh
Q 009406 413 STIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQ 492 (535)
Q Consensus 413 ~~~g~~~pg~~~~~~~~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~~~~~p~~~~~~~~f~~~V~~ED~~IlE~qQ 492 (535)
... | . ...++.+.|+++++|++.+.++..... ..........+. ...|+.||..|+|.+|
T Consensus 83 ~~~----~------------~-~~~~~~~~P~~p~~t~~~~~~~~~~~~-~~~~~~~~~~~~--~~~v~~ED~~i~e~vQ 142 (175)
T cd08883 83 NRY----P------------P-GMDVNVVLPLGPERCKVVFDYFVDDSD-GSDEAFIAESIE--SDRVQKEDIEICESVQ 142 (175)
T ss_pred eec----C------------C-eEEEEEEEeCCCCcEEEEEEEEEeccc-cchhHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 532 1 1 233555789999999998877653221 111112222222 5789999999999999
Q ss_pred hhccCCCCc-CCCCccCChHHHHHHHHHHHH
Q 009406 493 ERMNNGANV-WNLPVGYDKLGVRYRLWRDAL 522 (535)
Q Consensus 493 ~~l~~g~~~-~~l~~~aD~~~v~yRrwl~~l 522 (535)
+||.++... ..+....+.++..|++|+++.
T Consensus 143 ~Gl~S~~~~~G~l~~~~E~~v~~Fh~~l~~~ 173 (175)
T cd08883 143 RGLESGAYDPGRFSPKRENGVHHFHRLLAQA 173 (175)
T ss_pred hhhcCCCCCCCCCCCccchHHHHHHHHHHHh
Confidence 999987532 222223477888999998754
No 49
>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.41 E-value=4e-12 Score=123.94 Aligned_cols=167 Identities=13% Similarity=0.008 Sum_probs=98.6
Q ss_pred CceeeeEEEEEeecchhhHhhhcCCCCCCCCcCcccccc------CCCCC-c-----eeeee----------cCCCC---
Q 009406 337 GFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK------GWSVP-S-----LVKFL----------TPASG--- 391 (535)
Q Consensus 337 ~~~~~~~~~~~~~~nwk~~~EN~lD~~H~~~vH~~t~~~------~~~vp-~-----~v~~~----------~~~~~--- 391 (535)
+++......++++||||+++||++|+||++++|+++... ....+ . ..... .....
T Consensus 7 ~~~~~~~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (205)
T cd08884 7 NLKVAHRISYEVAANWKLVVENYRECYHCAGVHPELARSLSEFDDGGNPDPEAGGADFRGRRGPLRGGAESFTMDGKAVA 86 (205)
T ss_pred hcEEccceEEEEccCceehhHhCcccccCccccHHHHhhcccccccccccccccccceeeecccccCCceeecCCCCccc
Confidence 455555667889999999999999999999999987631 11000 0 00000 00000
Q ss_pred --CCcccc--CCCceeEEcCceeEEEEeeecCCCCcCCCCcccccceeEEEEEEecCCCCeeEeeeeeeccchhhccCch
Q 009406 392 --LQGYWD--PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVP 467 (535)
Q Consensus 392 --~~g~~~--~~~~~~~f~~P~~v~~~~g~~~pg~~~~~~~~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~~~~~p 467 (535)
+.+.-. .......+..|++++... ...+.++.+.|+++++|++.+.++...........
T Consensus 87 p~~~~~~~~~~~~~~~~~lfPN~~~~~~-----------------~d~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~~~ 149 (205)
T cd08884 87 PPLPGLTEADDRGALYYTLYPNSFLHLH-----------------PDHVVTFRVLPLSPDETLVRCKWLVHPDAVEGVDY 149 (205)
T ss_pred CCCCCCCccccCceEEEEeCCcEEEEEc-----------------CCEEEEEEEEeCCCCceEEEEEEEECCchhccccc
Confidence 000000 001123345677655432 12344666799999999998887654222111111
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHhhhccCCCCcCCCCccCChHHHHHHHHHHH
Q 009406 468 FMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDA 521 (535)
Q Consensus 468 ~~~~~~~~f~~~V~~ED~~IlE~qQ~~l~~g~~~~~l~~~aD~~~v~yRrwl~~ 521 (535)
... ....+...|..||..|+|.+|+|+.++..........+.++..|.+|+.+
T Consensus 150 ~~~-~~~~~~~~v~~ED~~i~e~vQ~Gl~S~~~~~g~l~~~E~~v~~F~~~~~~ 202 (205)
T cd08884 150 DLD-DLVEVWDATNRQDWAICERNQRGVNSPAYRPGPYSPMEGGVLAFDRWYLE 202 (205)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHhcccccCCCcCCCCcCCccHHHHHHHHHHHH
Confidence 112 22346788999999999999999998754322222456788889999764
No 50
>cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.39 E-value=4e-12 Score=121.84 Aligned_cols=160 Identities=14% Similarity=0.024 Sum_probs=94.4
Q ss_pred EEEEEeecchhhHhhhcCCCCCCCCcCccccccCCCCCceeeee-----------cCCCCCCccccCCCceeEEcCceeE
Q 009406 343 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFL-----------TPASGLQGYWDPYPIDMEFRPPCMV 411 (535)
Q Consensus 343 ~~~~~~~~nwk~~~EN~lD~~H~~~vH~~t~~~~~~vp~~v~~~-----------~~~~~~~g~~~~~~~~~~f~~P~~v 411 (535)
...++++||||+++||++|+||++++|+++++............ .+................+..|+++
T Consensus 3 ~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~ 82 (182)
T cd08886 3 RLTSEIKANWKNVVDNYLECYHCHTAHPDFVDSLDMDTYKHTTHGNYSSQMANYGSAENSEYSVKPDADFAFYWLWPNTM 82 (182)
T ss_pred eEEEEeecccEEEEecCCccccCcccChhHHhcccccccEEEecCcEEEEEeccccccccccccccCcceeEEEEeCCEE
Confidence 35678999999999999999999999999885411000000000 0000000000001112345568777
Q ss_pred EEEeeecCCCCcCCCCcccccceeEEEEEEecCCCCeeEeeeeeeccchhhccCchhHHHHHHHHHHHHH-hhHHHHHHH
Q 009406 412 LSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVL-NEDLRLVLG 490 (535)
Q Consensus 412 ~~~~g~~~pg~~~~~~~~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~~~~~p~~~~~~~~f~~~V~-~ED~~IlE~ 490 (535)
++.. |+ .....++.+.|+++++|++.+.++..-. ...... .. ...+...|+ .||..+||.
T Consensus 83 i~~~----~~-----------~~~~~~~~~~P~~p~~t~~~~~~~~~~~--~~~~~~-~~-~~~~~~~v~~~ED~~l~e~ 143 (182)
T cd08886 83 LNVY----PG-----------AGNMGVINIIPVDAETTLQHYDFYFRDE--ELTDEE-KE-LIEYYRQVLQPEDLELVES 143 (182)
T ss_pred EEee----CC-----------CCeEEEEEEEeCCCCeEEEEEEEEecCC--CccHHH-HH-HHHHHHHhcchhhHHHHHH
Confidence 6542 11 0123456689999999999877663211 111111 11 224567787 999999999
Q ss_pred HhhhccCCCCcC-CCC------ccCChHHHHHHHHHHH
Q 009406 491 QQERMNNGANVW-NLP------VGYDKLGVRYRLWRDA 521 (535)
Q Consensus 491 qQ~~l~~g~~~~-~l~------~~aD~~~v~yRrwl~~ 521 (535)
+|+++.++.... .+. ...+.++..|.+|+++
T Consensus 144 vQ~Gl~S~~~~~g~l~~~~~~~~~~E~~v~~fh~~l~~ 181 (182)
T cd08886 144 VQRGLKSRAFGQGRIVVDPSGSGISEHAVHHFHGLVLE 181 (182)
T ss_pred HhcccccCCCCCceeccCcccCCccchhHHHHHHHHhc
Confidence 999999865322 122 2357788899999764
No 51
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=99.35 E-value=5e-12 Score=120.76 Aligned_cols=93 Identities=20% Similarity=0.261 Sum_probs=78.4
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcC----------------------------------CCcEEEEeecCCCC
Q 009406 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------DGIPGCVQNTCAHR 262 (535)
Q Consensus 217 ~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~----------------------------------dG~i~A~~n~CpHR 262 (535)
.|+.| ..++|++|+.+.+.+.|.+++|+|.. +++++|+.+.|||.
T Consensus 40 ~~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH~ 118 (174)
T TIGR01416 40 APTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTHL 118 (174)
T ss_pred CcEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCCC
Confidence 36677 78999999999999999999999862 48999999999999
Q ss_pred CCCCCC-Cccc-CCeeeccCCCeeEcCCCCccccCCcccccccccccceEEecC
Q 009406 263 ACPLHL-GSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEG 314 (535)
Q Consensus 263 ga~Ls~-G~v~-~~~l~CPyHGW~Fd~dG~c~~iP~~~~~~~~L~~~pv~e~~G 314 (535)
||.+.+ +... .+.|.||+||++||.+|+.+..|. +..|..||++..++
T Consensus 119 Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa----~~~L~~~~~~~~~~ 168 (174)
T TIGR01416 119 GCIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPA----PLNLPVPPYKFLSD 168 (174)
T ss_pred CCccccccCCCCCCEEEeCCCCCEECCCCcEecCCC----CCCCCCCCEEEcCC
Confidence 987654 4333 468999999999999999998876 45899999987665
No 52
>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []. The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....
Probab=99.26 E-value=9.7e-12 Score=117.93 Aligned_cols=159 Identities=16% Similarity=0.132 Sum_probs=95.6
Q ss_pred EEEeecchhhHhhhcCCCCCCCCcCccccccCCCCCce------eeeecCCCCCC-------------cccc--------
Q 009406 345 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSL------VKFLTPASGLQ-------------GYWD-------- 397 (535)
Q Consensus 345 ~~~~~~nwk~~~EN~lD~~H~~~vH~~t~~~~~~vp~~------v~~~~~~~~~~-------------g~~~-------- 397 (535)
.++++||||+++||++|+||++++|+++++........ .....+..... ....
T Consensus 11 ~~~~~~NWK~~~EN~~e~YH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (209)
T PF00848_consen 11 RYEVDCNWKLAVENFLEGYHVPFLHPSTLGFFDPSNDEQAEIASVEFFGGHGSVWAGRMREEPQPEPSERRAWKGRPFPP 90 (209)
T ss_dssp HHHESS-HHHHHHHHHHCTTHHHHTHHHHHHHSCTTGGHHEEEEEEEESSTCEEETHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred EEEecccceEHHHhCcccccccccccchhhhhhccccccccccccccccccccccccccccccccccchhhhhhhhhccc
Confidence 45689999999999999999999999986532111111 11111111000 0000
Q ss_pred ------CCCceeEEcCceeEEEEeeecCCCCcCCCCcccccceeEEEEEEecCCCCeeEeeeeeeccchhhccCchhHHH
Q 009406 398 ------PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQY 471 (535)
Q Consensus 398 ------~~~~~~~f~~P~~v~~~~g~~~pg~~~~~~~~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~~~~~p~~~~ 471 (535)
.......+..|++++... ++. ..+..+.|+++++|++.+..+...... .-+.+..
T Consensus 91 ~~~~~~~~~~~~~~iFPn~~i~~~----~~~-------------~~~~~~~P~~p~~t~~~~~~~~~~~~~--~~~~~~~ 151 (209)
T PF00848_consen 91 GLPDDQRMGYRNYVIFPNLSIIVY----PDH-------------FTVRTIIPIGPDRTEVWSWWFVPKDEG--APPEFRE 151 (209)
T ss_dssp HHHHHHHTSEEEEEETTTEEEEE-----TTT-------------TEEEEEEEESTTEEEEEEEEEEETT----STHHHHH
T ss_pred cccccccccccceeeCCCEEEEec----ccc-------------cEEEEEEECCCCeEEEEEEEEEeCCcc--cchhhHH
Confidence 001124456788776532 111 125667999999999998877543211 2222233
Q ss_pred HHHHHHHH---HHhhHHHHHHHHhhhccCCCC-cCCCCccCChHHHHHHHHHHHH
Q 009406 472 LWRHFAEQ---VLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDAL 522 (535)
Q Consensus 472 ~~~~f~~~---V~~ED~~IlE~qQ~~l~~g~~-~~~l~~~aD~~~v~yRrwl~~l 522 (535)
.+...... |+.||..++|++|+++.++.. ...+....|..+..|++|++++
T Consensus 152 ~~~~~~~~~~~~~~ED~~~~e~~Q~gl~s~~~~~~~~~~~~E~~v~~f~~~~~~~ 206 (209)
T PF00848_consen 152 ARIRNWDRFFGVFAEDIEIVERQQRGLRSRGFDPGRLSGTSERGVRHFHRWWRRY 206 (209)
T ss_dssp HHHHHHHHHHSTHHHHHHHHHHHHHHTTSSTSCTSEESSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 33332333 899999999999999988543 2223457899999999886643
No 53
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=99.08 E-value=5.9e-10 Score=105.55 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=53.8
Q ss_pred cCCCcEEEEeecCCCCCCCCCC---------------CcccCCeeeccCCCeeEcC-CC-CccccCCcccccccccccce
Q 009406 247 GKDGIPGCVQNTCAHRACPLHL---------------GSVNEGRIQCPYHGWEYST-DG-KCEKMPSTQLRNVKIKSLPC 309 (535)
Q Consensus 247 ~~dG~i~A~~n~CpHRga~Ls~---------------G~v~~~~l~CPyHGW~Fd~-dG-~c~~iP~~~~~~~~L~~~pv 309 (535)
+.+|+++|++++|||+||+|.. |...++.|.||+|||+||. +| ..+..|+ ...|+.|++
T Consensus 72 Gp~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA----~~pLp~~~L 147 (171)
T cd03475 72 GPNKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPA----PRPLPAVIL 147 (171)
T ss_pred CCCCEEEEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCC----CCCcCEeEE
Confidence 3489999999999999998753 4456789999999999996 56 4555555 347899999
Q ss_pred EEec--CcEEE
Q 009406 310 FEQE--GMIWI 318 (535)
Q Consensus 310 ~e~~--G~IwV 318 (535)
+..+ |.||+
T Consensus 148 ~~d~~~d~iyA 158 (171)
T cd03475 148 EYDSSTDDLYA 158 (171)
T ss_pred EEeCCCCcEEE
Confidence 8774 78886
No 54
>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO). One of the proteins the domain is found in is Pheophorbide a oxygenase (PaO) which seems to be a key regulator of chlorophyll catabolism. Arabidopsis PaO (AtPaO) is a Rieske-type 2Fe-2S enzyme that is identical to Arabidopsis accelerated cell death 1 and homologous to lethal leaf spot 1 (LLS1) of maize [], in which the domain described here is also found. ; GO: 0010277 chlorophyllide a oxygenase [overall] activity, 0055114 oxidation-reduction process
Probab=98.85 E-value=8.8e-09 Score=88.42 Aligned_cols=88 Identities=36% Similarity=0.769 Sum_probs=65.3
Q ss_pred EcCceeEEEEeeecCCCCcCCCCcccccceeEEEEEEecCCCCeeEeeeeeeccc-hhhccCchhHHHHHHHH-HHHHHh
Q 009406 405 FRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDF-ASVLKHVPFMQYLWRHF-AEQVLN 482 (535)
Q Consensus 405 f~~P~~v~~~~g~~~pg~~~~~~~~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~~f-~~~~~~~p~~~~~~~~f-~~~V~~ 482 (535)
|.+||++.+.... .....+..+++++++|+|+++++||+++++.++| ..+.+.+| ..+.+. .+.|++
T Consensus 1 F~pPc~v~~~~~~--------~~~~~~~~~~~~~~~~vP~~pG~~Rli~r~~~~f~~~~~k~~P---~wl~H~~~n~VLd 69 (92)
T PF08417_consen 1 FIPPCLVRSTEEG--------PKKKSCGKRLHQVFYCVPTGPGRCRLIWRFPRNFPAWIFKLIP---RWLSHLTSNKVLD 69 (92)
T ss_pred CCCCEEEEEeccc--------cccCCCCCEEEEEEEEEECCCCeEEEEEEehhhhhhHHhhcCC---HHHHHHhhCcccH
Confidence 6799999876111 0112234567889999999999999999999998 33444566 344444 488999
Q ss_pred hHHHHHHHHhhhccC-CCCcCC
Q 009406 483 EDLRLVLGQQERMNN-GANVWN 503 (535)
Q Consensus 483 ED~~IlE~qQ~~l~~-g~~~~~ 503 (535)
||+.++..||+.+.+ |.+.|.
T Consensus 70 ~Dl~lLh~Qe~~l~~~g~~~W~ 91 (92)
T PF08417_consen 70 QDLYLLHGQERRLAREGADNWQ 91 (92)
T ss_pred HHHHHHHHHHHHHHHhccCcCC
Confidence 999999999999987 777663
No 55
>cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp. strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative deg
Probab=98.69 E-value=1.6e-07 Score=93.00 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=28.1
Q ss_pred EEEeecchhhHhhhcCCCCCCCCcCc--ccccc
Q 009406 345 VMELPIEHGLLLDNLLDLAHAPFTHT--STFAK 375 (535)
Q Consensus 345 ~~~~~~nwk~~~EN~lD~~H~~~vH~--~t~~~ 375 (535)
..++++|||+.+||+.|.||++.+|. .||+.
T Consensus 5 ~~~~~~nwk~~~~~~~~~yh~~~~h~~~~t~g~ 37 (222)
T cd08880 5 RQRIPGNWKLYAENVKDPYHASLLHLFFVTFGL 37 (222)
T ss_pred eeecCCCcHHHHHhccCcchHHHHhhhheeeec
Confidence 46789999999999999999999999 78764
No 56
>cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas fluorescens MupW and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-l
Probab=98.67 E-value=1.1e-07 Score=95.62 Aligned_cols=85 Identities=9% Similarity=-0.036 Sum_probs=53.5
Q ss_pred EEEEEec--CCCCeeEeeeeeeccchhhccCc------hhHHHHHHHH--HHHHHhhHHHHHHHHhhhccCCCCcCCCCc
Q 009406 437 QLHVCLP--SSRKKTRLLYRMSLDFASVLKHV------PFMQYLWRHF--AEQVLNEDLRLVLGQQERMNNGANVWNLPV 506 (535)
Q Consensus 437 ~~~~~tP--vs~~~Tr~~~~~~~~f~~~~~~~------p~~~~~~~~f--~~~V~~ED~~IlE~qQ~~l~~g~~~~~l~~ 506 (535)
.++.+.| .++++|.+...++....+..... ...... ..+ ...|++||..+|+.+|+||.++........
T Consensus 146 ~~~r~~P~~~dpd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~ED~~~~e~vQ~Gl~S~~~~~~~l~ 224 (243)
T cd08882 146 LVYRFRPHGDDPEKCIFDIWSLERYPEGAEPPEPPEEHEVFSDA-PELGGLGLVLDQDFSNLPAVQKGMHSRGFGGLVLA 224 (243)
T ss_pred EEEEeecCCCCCCeEEEEEEEEEECCCCCCCCCCCccccccccc-cccccccchhHhHHHHHHHHHHHhccCCCCCcccC
Confidence 4556678 59999998877654332221110 011111 112 368999999999999999998754322222
Q ss_pred cCC-hHHHHHHHHHHHH
Q 009406 507 GYD-KLGVRYRLWRDAL 522 (535)
Q Consensus 507 ~aD-~~~v~yRrwl~~l 522 (535)
... ..+..|.+|++++
T Consensus 225 ~~EE~~I~~FH~~l~~~ 241 (243)
T cd08882 225 NQEESRIRHFHEVLDDY 241 (243)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 333 7888999998764
No 57
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=98.60 E-value=7.4e-08 Score=92.19 Aligned_cols=76 Identities=24% Similarity=0.376 Sum_probs=60.0
Q ss_pred CeeEEEEEcCCCc-----EEEEeecCCCCCCCCCC-CcccCCeeeccCCCeeEcCCCCccccCCcccccccccccceEEe
Q 009406 239 EEPWVIFRGKDGI-----PGCVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQ 312 (535)
Q Consensus 239 g~~vvv~R~~dG~-----i~A~~n~CpHRga~Ls~-G~v~~~~l~CPyHGW~Fd~dG~c~~iP~~~~~~~~L~~~pv~e~ 312 (535)
+.+...++..+|. +.|+...|.|.||.+.. +....+.|.|||||.+||.+|+.+..|+ +..|+.+++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~g~vv~GPA----~~~L~~~~~~~~ 158 (177)
T COG0723 83 GPKGGVTRDGDGGVGNKEIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPDGGVVKGPA----PRPLPIPPLEYD 158 (177)
T ss_pred cccccceecccCCCCCccEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCCCCeeCCCC----CCCcCCceEEEe
Confidence 4455555555554 44999999999999998 5667799999999999999999998887 457888888777
Q ss_pred cCcEEE
Q 009406 313 EGMIWI 318 (535)
Q Consensus 313 ~G~IwV 318 (535)
.+-+++
T Consensus 159 ~d~~~~ 164 (177)
T COG0723 159 SDKLYL 164 (177)
T ss_pred CCceEE
Confidence 664443
No 58
>cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of anthranilate 1,2-dioxygenase (AntDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are
Probab=98.47 E-value=3.7e-07 Score=91.31 Aligned_cols=31 Identities=32% Similarity=0.273 Sum_probs=28.2
Q ss_pred EEEEeecchhhHhhhcCCCCCCCCcCccccc
Q 009406 344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374 (535)
Q Consensus 344 ~~~~~~~nwk~~~EN~lD~~H~~~vH~~t~~ 374 (535)
..+.++||||+.+||+.|.||++++|.+++.
T Consensus 4 ~~~~~~~nWK~~~en~~d~yH~~~~H~~~~~ 34 (237)
T cd08879 4 HRYRYRGNWKLQLENGTDGYHPPFVHASYVA 34 (237)
T ss_pred eEEEeeceEEEEeeecCccccCccccHHHHH
Confidence 4578899999999999999999999998874
No 59
>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are th
Probab=98.43 E-value=8.5e-07 Score=87.04 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=29.5
Q ss_pred EEEEEeecchhhHhhhcC-CCCCCCCcCcccccc
Q 009406 343 EIVMELPIEHGLLLDNLL-DLAHAPFTHTSTFAK 375 (535)
Q Consensus 343 ~~~~~~~~nwk~~~EN~l-D~~H~~~vH~~t~~~ 375 (535)
...+.++||||+++|||+ |.||++++|.+++..
T Consensus 8 ~~~~~~~~NWK~~~en~~~d~yH~~~~H~~~~~~ 41 (206)
T cd08881 8 PQKWVIKANWKLAAENFAGDGYHTGTTHASALEA 41 (206)
T ss_pred cEEEEecCcceehhhccccccccchhhhHHHHHh
Confidence 456789999999999998 999999999998754
No 60
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=98.22 E-value=2.1e-06 Score=88.24 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=52.3
Q ss_pred cCCCcEEEEeecCCCCCCCCCCC------c----------------------cc---CCeeeccCCCeeEcC-C-CCccc
Q 009406 247 GKDGIPGCVQNTCAHRACPLHLG------S----------------------VN---EGRIQCPYHGWEYST-D-GKCEK 293 (535)
Q Consensus 247 ~~dG~i~A~~n~CpHRga~Ls~G------~----------------------v~---~~~l~CPyHGW~Fd~-d-G~c~~ 293 (535)
+.++.|.||+.+|+|.||++.+- . -. .+.|.|||||.+||. + |+.+.
T Consensus 173 Gp~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~ 252 (321)
T TIGR03171 173 GPNKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLT 252 (321)
T ss_pred CCCCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeC
Confidence 45788999999999999998331 0 01 148999999999996 3 57888
Q ss_pred cCCcccccccccccceEEe--cCcEEEc
Q 009406 294 MPSTQLRNVKIKSLPCFEQ--EGMIWIW 319 (535)
Q Consensus 294 iP~~~~~~~~L~~~pv~e~--~G~IwV~ 319 (535)
.|.. ..|..++++.. .|.||+-
T Consensus 253 GPA~----rpLp~i~l~~d~~~~~l~Av 276 (321)
T TIGR03171 253 GPTV----RPLPAVILEWDSSTDYLYAI 276 (321)
T ss_pred CCCC----CCCCcceEEEeCCCCeEEEE
Confidence 8874 46888888775 4678763
No 61
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=98.14 E-value=2.6e-06 Score=81.73 Aligned_cols=75 Identities=27% Similarity=0.392 Sum_probs=63.0
Q ss_pred ecCCCCCCCeEEEEECCeeEEEE--------------------------EcCCCcEEEEeecCCCCCCCCCCCcccCCee
Q 009406 223 FSTDLKDDTMVPFDCFEEPWVIF--------------------------RGKDGIPGCVQNTCAHRACPLHLGSVNEGRI 276 (535)
Q Consensus 223 ~s~eL~~g~~~~~~l~g~~vvv~--------------------------R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l 276 (535)
..++|++|+-++++-.|.|+++- |.++=++.++-.+|.|.||-.....++-+..
T Consensus 91 ~l~~IPeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rvk~~ewl~~igVCThLGCVp~~~AGd~gg~ 170 (210)
T KOG1671|consen 91 KLSDIPEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRVKKPEWLVVIGVCTHLGCVPIANAGDYGGY 170 (210)
T ss_pred eeecCCCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhccCcceEEEEeeeccccccccccccccCce
Confidence 45678888888888888888883 3334457899999999999988877777889
Q ss_pred eccCCCeeEcCCCCccccCCc
Q 009406 277 QCPYHGWEYSTDGKCEKMPST 297 (535)
Q Consensus 277 ~CPyHGW~Fd~dG~c~~iP~~ 297 (535)
.|||||..||..|+..+.|+.
T Consensus 171 ~CPCHGSHYdasGRIrkGPAP 191 (210)
T KOG1671|consen 171 YCPCHGSHYDASGRIRKGPAP 191 (210)
T ss_pred ecccccccccccCceecCCCC
Confidence 999999999999999999873
No 62
>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium. The catalytic domain is found C-termnial to the iron-sulphur-binding Rieske domain and is composed of antiparallel beta sheets and alpha helices []. It is part of a much larger superfamily of lipid binding domains which form a common fold that works as a versatile scaffold for binding bulky ligands [].; PDB: 1Z03_D 1Z01_E 1Z02_F 2DE6_A 2DE7_C 1WW9_A 2DE5_C 3GKQ_F 3GCF_L.
Probab=97.99 E-value=3.3e-05 Score=76.36 Aligned_cols=184 Identities=17% Similarity=0.232 Sum_probs=93.3
Q ss_pred CceeeeEEEEEeecchhhHhhhcCCCCCCCCcCcccc---ccCCCCC---------ceeeeecCCCCCCccccCCCce--
Q 009406 337 GFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTF---AKGWSVP---------SLVKFLTPASGLQGYWDPYPID-- 402 (535)
Q Consensus 337 ~~~~~~~~~~~~~~nwk~~~EN~lD~~H~~~vH~~t~---~~~~~vp---------~~v~~~~~~~~~~g~~~~~~~~-- 402 (535)
+..+. .....+.|||.+.+||.+|+.|+ |+|+.+. +..+..| ..++......+++|..+.+...
T Consensus 22 ~~~~~-g~~~~~~~NWR~a~ENGfD~~H~-fiHk~s~~v~~~D~~lplG~~p~d~~~~t~~v~d~~gPKG~~~~~~~~~~ 99 (240)
T PF11723_consen 22 DIVIF-GMHREINANWRLAAENGFDPGHI-FIHKDSIWVHANDWALPLGFRPTDSDGMTKVVEDEDGPKGVMDRLTEHYE 99 (240)
T ss_dssp TEEEE-EEEEEESS-HHHHHHHHT-TTGG-GGGTT-HHHHHTTBEE-SEEEESSCCCEEEEEC-STSS-EEEE-CHHHEE
T ss_pred cceEE-eeeeeccccchhhhhhCcCcceE-EEecCcceEEecceecccccccCCcccceEEEecCCCCceeeecccccce
Confidence 44333 45678999999999999999998 9999653 1111111 1112222233444433221100
Q ss_pred -----------eE--EcCceeEEEEeeecCCCCcCCCCcccc-cceeEEEEEEecCCCCeeEeeeeeeccchhhccCchh
Q 009406 403 -----------ME--FRPPCMVLSTIGISKPGKLEGQNTRQC-ATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPF 468 (535)
Q Consensus 403 -----------~~--f~~P~~v~~~~g~~~pg~~~~~~~~~~-~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~~~~~p~ 468 (535)
.. -..|..+...+.+--||-+. +... ..++.++-..+|+++++.+++..+...-. ..++...
T Consensus 100 pi~e~~i~g~~~~~~~~~~~~~~~~iSiwlPgVL~---V~~~P~p~~~qyEwYVPID~~~h~Y~q~l~~~~~-t~ee~~~ 175 (240)
T PF11723_consen 100 PIFENEIDGEKVRNGNTNPVAVAMRISIWLPGVLM---VENWPYPDFTQYEWYVPIDEDTHRYFQLLGKVCP-TEEERKA 175 (240)
T ss_dssp EESEEEETTEEEEE-BESSBE--SEEEEETTTEEE---EES-SSTTEEEEEEEEEEETTEEEEEEEEEEE-S-SHHHHHH
T ss_pred EEEecccCCceeecCCCCCceeEEEeeEeccceee---cccCCCCCeeEEEEEEEecccceeeEeEEeeecC-CHHHHHH
Confidence 00 00022221222222222110 0111 14577777789999999999876654211 1111111
Q ss_pred ----HHHHHH-HHHHHHHhhHHHHHHHHhhhccCCCC-cCCCCccCChHHHHHHHHHHHHHcCC
Q 009406 469 ----MQYLWR-HFAEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGA 526 (535)
Q Consensus 469 ----~~~~~~-~f~~~V~~ED~~IlE~qQ~~l~~g~~-~~~l~~~aD~~~v~yRrwl~~l~~g~ 526 (535)
+...|+ .....+.+.|.-..|+.|+=...+.. ..|.....|...+++||...+..+|.
T Consensus 176 f~~~f~~~~~~~~l~gFN~~D~wAREamq~fY~d~~Gw~~E~L~~~D~sIi~WRkLas~~nrgI 239 (240)
T PF11723_consen 176 FEYEFEEQWKPLALHGFNDDDIWAREAMQPFYADDTGWDREQLFEPDKSIIAWRKLASEHNRGI 239 (240)
T ss_dssp HHHHHHHTHHHHTTTTTTHHHHHHHHHHHHHHHTSHHHHH----GGGHHHHHHHHHHHHH-SEB
T ss_pred HHHHHHHHhHHhhccCCCchhHHHHHHhhhhhhccCCCCHHHhcCcchhHHHHHHHHHHhhccC
Confidence 112222 12345778999999999976655321 12567789999999999999887764
No 63
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.19 E-value=0.026 Score=61.41 Aligned_cols=38 Identities=34% Similarity=0.829 Sum_probs=34.4
Q ss_pred CCCCCCCCCcccCCeeeccCCCeeEc-CCCCccccCCcc
Q 009406 261 HRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMPSTQ 298 (535)
Q Consensus 261 HRga~Ls~G~v~~~~l~CPyHGW~Fd-~dG~c~~iP~~~ 298 (535)
|.|+||..|-...++++||+||..|+ .+|....-|...
T Consensus 1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~~ 39 (478)
T KOG1336|consen 1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGLD 39 (478)
T ss_pred CCCcchhhccccCCcccccccceeecCCcCchhhCcCcc
Confidence 89999999977889999999999999 699998888754
No 64
>PRK14127 cell division protein GpsB; Provisional
Probab=86.44 E-value=1.9 Score=38.43 Aligned_cols=38 Identities=26% Similarity=0.492 Sum_probs=19.2
Q ss_pred HHHHhhChhhhhccc----hhhHHHHHHHHHHHHHHHHHHHh
Q 009406 105 KVVEVLNPLARDYKS----IGTMKKELAELQEDLAQAHRQVH 142 (535)
Q Consensus 105 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 142 (535)
.|-+-|..+|.||.. +..|+++++.|++++...+.|+-
T Consensus 27 EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 27 EVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355555555555431 33455555555555555544444
No 65
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=65.24 E-value=17 Score=33.23 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhhChhhhhccc-hhhHHHHHHHHHHHHHHHHHHHhhh
Q 009406 96 VLTIMLLHEKVVEVLNPLARDYKS-IGTMKKELAELQEDLAQAHRQVHIS 144 (535)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s 144 (535)
.-||..+|+||+....+--+-.|+ ..-||+-|..+||-|.+-..-+++.
T Consensus 69 i~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L 118 (126)
T PF13118_consen 69 IGTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELL 118 (126)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 459999999999988875554443 4457777888888776555444433
No 66
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=62.29 E-value=30 Score=28.28 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=35.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhH-----hhHHHhhhhHHHHHHHHh
Q 009406 118 KSIGTMKKELAELQEDLAQAHRQVHISE-----ARVATALDKLAYMEALVN 163 (535)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----~r~~~~l~~~~~me~~~~ 163 (535)
+|...|+++|.+|++||..-.-|-.+.+ .++...-..+++|..+.+
T Consensus 12 ls~~eL~~~l~elk~eLf~LR~q~~~~~~l~n~~~ir~~Rk~IARi~Tvl~ 62 (69)
T PRK14549 12 MSPEEREEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARILTIQR 62 (69)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999987777765 355566666666655544
No 67
>PRK14161 heat shock protein GrpE; Provisional
Probab=59.42 E-value=36 Score=32.93 Aligned_cols=54 Identities=30% Similarity=0.427 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHH
Q 009406 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (535)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~ 157 (535)
||-..-.|.++++++. +..|++|+++|.+.|.+++.....-..|..........
T Consensus 12 ~~~~~~~~~~~~~~~e------i~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~ 65 (178)
T PRK14161 12 TINDIAEEIVETANPE------ITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKD 65 (178)
T ss_pred HHHHHHHhhhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888888774 57799999999999999999999999999877766554
No 68
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=59.17 E-value=41 Score=27.31 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=45.7
Q ss_pred HHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHHH
Q 009406 102 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (535)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me~ 160 (535)
+-+||...|.--.+=+.-...|+.+++.++.|-++-..+...-..||+.-++||--||.
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 44566555544444334466899999999999999999999999999999999887763
No 69
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=58.38 E-value=45 Score=33.62 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=20.9
Q ss_pred CCCeEEEEE--CCeeEEEEEcCCCcEEEEee
Q 009406 229 DDTMVPFDC--FEEPWVIFRGKDGIPGCVQN 257 (535)
Q Consensus 229 ~g~~~~~~l--~g~~vvv~R~~dG~i~A~~n 257 (535)
.|..+.+++ .|.=-.+|++.||+-..+.|
T Consensus 178 dG~~~~V~~LrlGr~~l~~~t~Dg~~~g~~~ 208 (251)
T PF11932_consen 178 DGEERQVDFLRLGRVALYYQTLDGSQAGVWD 208 (251)
T ss_pred CCeEEEEEEEeecchhheeECCCccceeeec
Confidence 577777766 57778888888887665554
No 70
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=57.49 E-value=34 Score=26.68 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=24.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhH
Q 009406 118 KSIGTMKKELAELQEDLAQAHRQVHISE 145 (535)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 145 (535)
+|...|+++|.+|.+||.+.+.|-.+++
T Consensus 6 ls~~eL~~~l~~l~~elf~Lr~q~~~~~ 33 (57)
T cd00427 6 KSDEELQEKLDELKKELFNLRFQKATGQ 33 (57)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5689999999999999999987776665
No 71
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=54.32 E-value=7.4 Score=34.74 Aligned_cols=36 Identities=33% Similarity=0.616 Sum_probs=23.6
Q ss_pred CcEEEEeecCCCCCCCCCCCccc--CCeeeccCCCeeEcCC
Q 009406 250 GIPGCVQNTCAHRACPLHLGSVN--EGRIQCPYHGWEYSTD 288 (535)
Q Consensus 250 G~i~A~~n~CpHRga~Ls~G~v~--~~~l~CPyHGW~Fd~d 288 (535)
|++--..-.| .+||-.|... .+.+.||+||=.-+.|
T Consensus 63 g~~e~v~~~C---rAPL~~G~LC~RrD~~kCPfHG~IIpRD 100 (110)
T PF09740_consen 63 GEFEPVPHAC---RAPLPNGGLCPRRDRKKCPFHGKIIPRD 100 (110)
T ss_pred CccCcCchhh---cCCCCCCCcCCccCcccCCCCCcccCCC
Confidence 3333333346 4777777764 4678999999887743
No 72
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=51.57 E-value=1.6e+02 Score=26.00 Aligned_cols=78 Identities=19% Similarity=0.355 Sum_probs=51.1
Q ss_pred CCCCCeEEEEE--CC--eeEEEEEcCCCcEEEEeecCCCCCCCCCCCc---ccCCeeeccCCCeeEcC------CCCccc
Q 009406 227 LKDDTMVPFDC--FE--EPWVIFRGKDGIPGCVQNTCAHRACPLHLGS---VNEGRIQCPYHGWEYST------DGKCEK 293 (535)
Q Consensus 227 L~~g~~~~~~l--~g--~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~---v~~~~l~CPyHGW~Fd~------dG~c~~ 293 (535)
|++|+...+.+ .| .++++++..+|++.+..|.|- ++.+. ..++.++|-.=|-+|.. .|.|-.
T Consensus 2 v~Dgklh~y~y~~~G~~vrff~i~~~dg~~~va~daCe-----iC~~~GY~q~g~~lvC~~C~~~~~~~~ig~~~GGCNP 76 (102)
T PF10080_consen 2 VKDGKLHRYAYTDDGKEVRFFAIKKPDGSYRVAFDACE-----ICGPKGYYQEGDQLVCKNCGVRFNLPTIGGKSGGCNP 76 (102)
T ss_pred ccCCcEEEEEEcCCCEEEEEEEEECCCCCEEEEEEecc-----ccCCCceEEECCEEEEecCCCEEehhhcccccCCCCc
Confidence 44455444444 22 468888889999999998874 33332 25789999999999883 344544
Q ss_pred cCCcccccccccccceEEecCcEEEcC
Q 009406 294 MPSTQLRNVKIKSLPCFEQEGMIWIWP 320 (535)
Q Consensus 294 iP~~~~~~~~L~~~pv~e~~G~IwV~l 320 (535)
+| .+-.+.+|.|-|..
T Consensus 77 ~P-----------~~~~~~~~~I~I~~ 92 (102)
T PF10080_consen 77 IP-----------LPYTVDGGNIIIDQ 92 (102)
T ss_pred cC-----------CceEecCCeEEEeH
Confidence 33 24566678887743
No 73
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=51.09 E-value=75 Score=30.57 Aligned_cols=91 Identities=16% Similarity=0.305 Sum_probs=56.2
Q ss_pred ceeehHhHHHHhhhcc-------eee------ccccchh--HH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHH
Q 009406 70 KFLDVNQALEVARYDI-------QYC------DWRARQD--VL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQED 133 (535)
Q Consensus 70 ~~~~~~~~~~~~~~~~-------~~~------~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (535)
++--||+|.++++-++ +-. ++ +..| +| .+|++|+++.|+-++- +-..+..+++++...+++
T Consensus 53 ~s~~IN~AY~~L~~p~~Ra~YlL~l~g~~~~~~~-~~~d~~fLme~me~rE~le~~~~~~--d~~~l~~~~~~i~~~~~~ 129 (173)
T PRK00294 53 RSASLNEAYQTLKSPPRRARYLLALSGHEVPLEV-TVHDPEFLLQQMQLREELEELQDEA--DLAGVATFKRRLKAAQDE 129 (173)
T ss_pred HHHHHHHHHHHhCChhhhHHHHHHhcCCCCCccc-CCCCHHHHHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHHHHHH
Confidence 5778999999876433 111 22 2323 33 8999999999886652 333456677777777666
Q ss_pred HHHHHHHHhhh---HhhHHHhhhhHHHHHHHHh
Q 009406 134 LAQAHRQVHIS---EARVATALDKLAYMEALVN 163 (535)
Q Consensus 134 ~~~~~~~~~~s---~~r~~~~l~~~~~me~~~~ 163 (535)
+.++-.+.=-. -......+.||-+|.++..
T Consensus 130 l~~~~~~~~~~~~~~~~A~~~v~kl~f~~kl~~ 162 (173)
T PRK00294 130 LNESFAACWDDAARREEAERLMRRMQFLDKLAQ 162 (173)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 66554431100 1345578888888877654
No 74
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=50.68 E-value=77 Score=28.84 Aligned_cols=67 Identities=24% Similarity=0.418 Sum_probs=39.6
Q ss_pred CceeehHhHHHHhhhcceeeccccchhH-------H----HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHH
Q 009406 69 GKFLDVNQALEVARYDIQYCDWRARQDV-------L----TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQA 137 (535)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (535)
+.-+|+.+.++-+.|||+.+|=+-++=+ | .|..+.+ +++.+++ ++..|..-..-|+.|+..-
T Consensus 26 ~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~-~l~~v~~------~v~~L~~s~~RL~~eV~~P 98 (132)
T PF10392_consen 26 DSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELES-VLQAVRS------SVESLQSSYERLRSEVIEP 98 (132)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHH-HHHHHHH------HHHHHHHHHHHHHHHHhhH
Confidence 4568999999999999999997655432 2 3444444 4444433 2444444444444444444
Q ss_pred HHHHh
Q 009406 138 HRQVH 142 (535)
Q Consensus 138 ~~~~~ 142 (535)
|+++.
T Consensus 99 y~~~~ 103 (132)
T PF10392_consen 99 YEKIQ 103 (132)
T ss_pred HHHHH
Confidence 44443
No 75
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=49.49 E-value=12 Score=32.45 Aligned_cols=32 Identities=19% Similarity=0.461 Sum_probs=26.3
Q ss_pred HhhChhhhhccchhhHHHHHHHHHHHHHHHHH
Q 009406 108 EVLNPLARDYKSIGTMKKELAELQEDLAQAHR 139 (535)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (535)
+++++..+-.++|.+|.|.+..||-||+.|+.
T Consensus 63 di~~eV~kTh~aIq~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 63 DIMGEVSKTHEAIQSLDKTISSLEMELAAARA 94 (95)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35556666678899999999999999999874
No 76
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=49.24 E-value=48 Score=29.23 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=35.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHHHHHhhhhhc
Q 009406 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 168 (535)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me~~~~~~~l~ 168 (535)
+...+++|++.+++++++..++..-.+..|..-=+....+|+..|..+.-
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~ 77 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGM 77 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCC
Confidence 46678888888888888777777666666663223357788888887743
No 77
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=49.14 E-value=1.1e+02 Score=26.50 Aligned_cols=33 Identities=33% Similarity=0.405 Sum_probs=26.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHH
Q 009406 117 YKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (535)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~ 149 (535)
.||+.+|+.|++-|||++.++-.+..-=.+|+.
T Consensus 1 Kk~~s~I~~eIekLqe~lk~~e~keaERigr~A 33 (92)
T PF07820_consen 1 KKSSSKIREEIEKLQEQLKQAETKEAERIGRIA 33 (92)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999988877654444443
No 78
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=48.12 E-value=49 Score=26.64 Aligned_cols=51 Identities=18% Similarity=0.389 Sum_probs=34.5
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHHHHHhhhh
Q 009406 116 DYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (535)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me~~~~~~~ 166 (535)
.+..+..++.|++.|+.++.+...+.--.+..++.--+--.++|+..|+++
T Consensus 15 ~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~l 65 (80)
T PF04977_consen 15 GYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKL 65 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 344566778888888888887777776666665543245566777777766
No 79
>PRK14156 heat shock protein GrpE; Provisional
Probab=47.47 E-value=70 Score=31.00 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=42.5
Q ss_pred HHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHH
Q 009406 103 HEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (535)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~ 157 (535)
.+.|.||..+-+-+.+ +..|+++++.|++.|.++.....+-..|..........
T Consensus 20 ~~~~~~~~~~~~~~~~-l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~ 73 (177)
T PRK14156 20 EETVEEVVEETPEKSE-LELANERADEFENKYLRAHAEMQNIQRRANEERQQLQR 73 (177)
T ss_pred HHHHHHHHhhcccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666655555555 78899999999999999999999999999877766444
No 80
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=46.50 E-value=51 Score=32.67 Aligned_cols=49 Identities=27% Similarity=0.437 Sum_probs=36.9
Q ss_pred hhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHH
Q 009406 109 VLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (535)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~m 158 (535)
.||.+-+ |.+|+.||+++..+..++..|+..+....+.-+.+.++.+.-
T Consensus 24 ~lNd~TG-Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~s 72 (207)
T PF05546_consen 24 ALNDVTG-YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSS 72 (207)
T ss_pred HHHhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666 888999999999988888888887776666666666666643
No 81
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=46.00 E-value=1.2e+02 Score=27.92 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=58.5
Q ss_pred CCceeehHhHHHHhhhcceeeccccchhHHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhh
Q 009406 68 KGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEAR 147 (535)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r 147 (535)
.+...|+.+.+.++- |+- -+-+.|.-.-+.+++++-..-+.+.+-...+..|+.+++.++.+++.++.+....+..
T Consensus 27 ~~~~~~~~~vin~i~-~Ll---~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~ 102 (151)
T PF11559_consen 27 EESEDNDVRVINCIY-DLL---QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQ 102 (151)
T ss_pred ccccccHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666665542 111 1234556667777888888888888888889999999999999988888877777666
Q ss_pred HHHhhhhHHH
Q 009406 148 VATALDKLAY 157 (535)
Q Consensus 148 ~~~~l~~~~~ 157 (535)
+.....++-.
T Consensus 103 ~~~~~~~~k~ 112 (151)
T PF11559_consen 103 LKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHH
Confidence 6654444433
No 82
>PRK09039 hypothetical protein; Validated
Probab=43.35 E-value=95 Score=33.05 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHhhH
Q 009406 120 IGTMKKELAELQEDLAQAHRQVHISEARV 148 (535)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~s~~r~ 148 (535)
|..|+.|++.|.++++.....+.-+|++-
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 83
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=42.75 E-value=48 Score=33.75 Aligned_cols=49 Identities=29% Similarity=0.359 Sum_probs=42.6
Q ss_pred HHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHH
Q 009406 102 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (535)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~ 150 (535)
|-.+|+|+||++..=.-++..|.||-+.+.+++.|-++|+.--+.++++
T Consensus 188 AAa~vve~lnk~~~l~V~td~L~keAe~i~~~lekl~eq~~~~~~~~~~ 236 (244)
T COG1938 188 AAARVVEALNKMLGLNVDTDKLEKEAEEIEEQLEKLAEQLEKEEERVER 236 (244)
T ss_pred HHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4568899999999999999999999999999999999998877776664
No 84
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=42.09 E-value=1.1e+02 Score=31.72 Aligned_cols=40 Identities=30% Similarity=0.458 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHH
Q 009406 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (535)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me 159 (535)
+...+++|..++|++.++...+.--..|+...-.||+++|
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677889999999999999999988889988888888876
No 85
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=39.80 E-value=1.3e+02 Score=30.33 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=19.1
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHH
Q 009406 116 DYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (535)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~ 157 (535)
....+..++.++..+++.+.+-+.++..-..++...-.++..
T Consensus 54 ~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 54 QLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444333
No 86
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=39.73 E-value=1.4e+02 Score=24.65 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhhHhhHHHhhhhHHH
Q 009406 127 LAELQEDLAQAHRQVHISEARVATALDKLAY 157 (535)
Q Consensus 127 ~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~ 157 (535)
-+.|.++..+-...-.-=+.|+..-|.|+.+
T Consensus 41 ~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 41 NEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4455555555555555556677777777654
No 87
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=39.37 E-value=2e+02 Score=23.33 Aligned_cols=63 Identities=30% Similarity=0.417 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHH----HHHHHHHHHhhhHhhHHHhhhhHHHHHHHHh
Q 009406 97 LTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQE----DLAQAHRQVHISEARVATALDKLAYMEALVN 163 (535)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~r~~~~l~~~~~me~~~~ 163 (535)
.-+|++|+.+.++-+. ++...+..|++++..... ++..+=..-.. ......+.||.++.++.+
T Consensus 8 me~mE~rE~le~~~~~--~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~--~~A~~~~~kLky~~kl~~ 74 (78)
T PF07743_consen 8 MEQMELREELEEAQNS--DDEAELEELKKEIEERIKELIKELAEAFDAKDW--EEAKEALRKLKYLQKLLE 74 (78)
T ss_dssp HHHHHHHHHHHHHCCC--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH--HHHHHHHHHHHHHHHHHH
Confidence 3799999999998654 222445555555444333 33333321111 122355666666665543
No 88
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=38.18 E-value=1.3e+02 Score=24.20 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=30.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhHh----hHHHhhhhHHHHHHHHhh
Q 009406 117 YKSIGTMKKELAELQEDLAQAHRQVHISEA----RVATALDKLAYMEALVND 164 (535)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----r~~~~l~~~~~me~~~~~ 164 (535)
.+|...|.++|.+|++||..-..|-.+++. ++...-..++++..+.+.
T Consensus 8 ~ls~~eL~~~l~~lkkeL~~lR~~~~~~~~~n~~~i~~~rk~IARi~Tvl~e 59 (66)
T PRK00306 8 ELSVEELNEKLLELKKELFNLRFQKATGQLENTHRLREVRRDIARIKTVLRE 59 (66)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999887765544432 333444444444444443
No 89
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=37.10 E-value=89 Score=25.71 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=29.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHHHHHhhhh
Q 009406 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (535)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me~~~~~~~ 166 (535)
.+..+..+++.++.++.+...+.--.+..++ .|+...++|++.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~-~l~~~~rIe~~Ar~~l 71 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVA-ELSRHERIEKIAKKQL 71 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHhc
Confidence 3456666666666666665555544444444 5566677777877776
No 90
>PRK04654 sec-independent translocase; Provisional
Probab=36.82 E-value=1e+02 Score=30.77 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHh
Q 009406 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (535)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~ 151 (535)
.|-.+.+-+-.+.+.+.||.+ ...||++|..+++++..+..++..+...+.+.
T Consensus 35 ~irk~R~~~~~vk~El~~El~-~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~ 87 (214)
T PRK04654 35 WVRRARMQWDSVKQELERELE-AEELKRSLQDVQASLREAEDQLRNTQQQVEQG 87 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667788888888877 67888888888888888888887777666643
No 91
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=36.38 E-value=1.7e+02 Score=28.17 Aligned_cols=62 Identities=19% Similarity=0.321 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHH----HHHHHHHHHhhhHhhHHHhhhhHHHHHHHHh
Q 009406 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQE----DLAQAHRQVHISEARVATALDKLAYMEALVN 163 (535)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~r~~~~l~~~~~me~~~~ 163 (535)
.+|++|++++|+ .-+++...+..|++++....+ ++.+|=..-.. ......+.||-++.++..
T Consensus 96 e~ME~rE~lee~--~~~~d~~~L~~l~~~v~~~~~~~~~~l~~~~~~~d~--~~A~~~~~rL~y~~kl~~ 161 (173)
T PRK01773 96 QQMEWREQLEEI--EQQQDEDALTAFSKEIKQEQQAILTELSTALNSQQW--QQASQINDRLRFIKKLII 161 (173)
T ss_pred HHHHHHHHHHhh--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHH
Confidence 789999999886 224455556555555444333 33333221111 344466777777766544
No 92
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=36.28 E-value=48 Score=30.37 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=14.0
Q ss_pred cceeeccc-----cchhHH---HH----HHHHHHH
Q 009406 84 DIQYCDWR-----ARQDVL---TI----MLLHEKV 106 (535)
Q Consensus 84 ~~~~~~~~-----~~~~~~---~~----~~~~~~~ 106 (535)
|+.|+||- ..-|+. .| ..+|.||
T Consensus 5 dLeYLdLa~~~K~s~~dLahNL~v~~~R~dL~~KV 39 (126)
T PF07028_consen 5 DLEYLDLATEEKVSNSDLAHNLRVTCYRSDLGSKV 39 (126)
T ss_pred CchhhhcccccCCcHHHHHhhhhhhhhHhhHHHHH
Confidence 77888883 344554 22 2677777
No 93
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=36.14 E-value=88 Score=33.06 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=40.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHHHHHhhhh
Q 009406 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (535)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me~~~~~~~ 166 (535)
.|.-|++++.+|+++|.+...+++++..++.-+..|-+=++++..+.=
T Consensus 176 ~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddan 223 (323)
T PF08537_consen 176 RVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDAN 223 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 367799999999999999999999999999988888777777666443
No 94
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=35.24 E-value=1.3e+02 Score=23.56 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=23.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhH
Q 009406 118 KSIGTMKKELAELQEDLAQAHRQVHISE 145 (535)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 145 (535)
+|...|+++|.+|.+||.+-..|..+++
T Consensus 7 ls~~eL~~~l~elk~eL~~Lr~q~~~~~ 34 (58)
T PF00831_consen 7 LSDEELQEKLEELKKELFNLRFQKATGQ 34 (58)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5688999999999999999888877654
No 95
>PF15155 MRFAP1: MORF4 family-associated protein1
Probab=34.80 E-value=81 Score=28.15 Aligned_cols=49 Identities=27% Similarity=0.313 Sum_probs=34.4
Q ss_pred HHHHHhhChhh----hhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHHHHH
Q 009406 104 EKVVEVLNPLA----RDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALV 162 (535)
Q Consensus 104 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me~~~ 162 (535)
-.-||||.|.- ==--.|..+|+++|.|..|-.+||-+ +-+||=+|..+.
T Consensus 12 peevevlepeedfeqfllPvi~e~RediAsL~Re~~RA~lR----------~R~KL~EmdnmL 64 (127)
T PF15155_consen 12 PEEVEVLEPEEDFEQFLLPVIHEMREDIASLTREHGRAYLR----------NRSKLWEMDNML 64 (127)
T ss_pred chhhcccCchhhhhhhccchHHHHHHHHHHHHHHHhHHHHH----------hHHHHHHHHHHH
Confidence 34578888865 12245889999999999999998875 345565555443
No 96
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=34.76 E-value=44 Score=29.41 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=37.9
Q ss_pred ccchhHH--HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHH
Q 009406 91 RARQDVL--TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQV 141 (535)
Q Consensus 91 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (535)
-.|+|+. .+.||+-.+ -+|.-.=...|.+|+.||..+|.|+..++.|+
T Consensus 52 ~~R~~a~~Sl~yEA~~R~---~dPv~Gc~G~i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 52 EQREDAMRSLVYEANARA---RDPVYGCVGIISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred cchhhHHHHHHHHHHhhc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3477777 556777654 57887888889999999999999999998764
No 97
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=34.40 E-value=97 Score=32.81 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHHHHHH-----------------HHHHHhhhHhhHHHhhhhHHHH-HHHHhhhhhc
Q 009406 120 IGTMKKELAELQEDLAQ-----------------AHRQVHISEARVATALDKLAYM-EALVNDRLLQ 168 (535)
Q Consensus 120 ~~~~~~~~~~~~~~~~~-----------------~~~~~~~s~~r~~~~l~~~~~m-e~~~~~~~l~ 168 (535)
|.|||..|.+++++|+. +|--+|-+.+-|...|+...+| |+.+-...+.
T Consensus 149 VDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee~Gl~~I~~ 215 (405)
T KOG2010|consen 149 VDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEEHGLVIIPD 215 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCeEeccC
Confidence 78888888888887764 5667888999999999988887 4544444444
No 98
>PRK11637 AmiB activator; Provisional
Probab=34.16 E-value=1.4e+02 Score=32.43 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhH
Q 009406 123 MKKELAELQEDLAQAHRQVHISEARV 148 (535)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~s~~r~ 148 (535)
++++|..+++++.+...++.-.++++
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 99
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=33.69 E-value=2e+02 Score=27.70 Aligned_cols=89 Identities=20% Similarity=0.275 Sum_probs=46.6
Q ss_pred eehHhHHHHhhhcceee---------cc----ccchh---HHHHHHHHHHHHHhhChhhhhccchhhHHHHH----HHHH
Q 009406 72 LDVNQALEVARYDIQYC---------DW----RARQD---VLTIMLLHEKVVEVLNPLARDYKSIGTMKKEL----AELQ 131 (535)
Q Consensus 72 ~~~~~~~~~~~~~~~~~---------~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 131 (535)
--||+|.++++-.+.-. |- .+..| |..+|++|++++|+-+ +.+...+..|+.++ .++.
T Consensus 57 ~~iN~AY~tL~~p~~Ra~Yll~l~G~~~~~e~~~~~d~~fLme~mE~rE~lee~~~--~~d~~~L~~l~~e~~~~~~~~~ 134 (176)
T PRK03578 57 TRANEAYQTLRDPLKRARYLLHLRGVDVQAENNTAMPPAFLMQQMEWREAIEDARA--ARDVDALDALLAELRDERRERY 134 (176)
T ss_pred HHHHHHHHHhCChhhHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHH
Confidence 57899988876544211 11 23345 5589999999998642 11222344444433 3333
Q ss_pred HHHHHHHHHHhhhHhhHHHhhhhHHHHHHHHh
Q 009406 132 EDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (535)
Q Consensus 132 ~~~~~~~~~~~~s~~r~~~~l~~~~~me~~~~ 163 (535)
.++.++=..-+ --......+.||.++.++..
T Consensus 135 ~~l~~~~~~~~-d~~~A~~~~~kL~y~~kl~~ 165 (176)
T PRK03578 135 AELGALLDSRG-DDQAAAEAVRQLMFIEKLAQ 165 (176)
T ss_pred HHHHHHHHccc-cHHHHHHHHHHHHHHHHHHH
Confidence 33333321101 01234566777777766544
No 100
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=32.87 E-value=1.6e+02 Score=25.34 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=37.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhH----hhHHHhhhhHHHHHHHHhhhhhcc
Q 009406 118 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVNDRLLQD 169 (535)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~r~~~~l~~~~~me~~~~~~~l~~ 169 (535)
+|...|+++|.+|++||..-..|-.+.+ .++...-..+++|..+.+.+-+..
T Consensus 8 lS~eEL~e~L~elkkELf~LR~q~atgql~n~~~ir~iRR~IARilTvl~Ek~~~~ 63 (87)
T PRK00461 8 KSVEELEKLVIELKAELFTLRFKNATGSLDQTHKIKEIRKDIARILTILNERELEE 63 (87)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999988876654443 355566666777777666655553
No 101
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.80 E-value=59 Score=25.59 Aligned_cols=45 Identities=31% Similarity=0.367 Sum_probs=30.5
Q ss_pred HhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHHHHHh
Q 009406 108 EVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (535)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me~~~~ 163 (535)
|.=|.+.+=-.+++|+|+|+.+|.+++.+-. .+..++-.|.+++-
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~-----------envk~ll~lYE~Vs 48 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIE-----------ENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 3445555556679999999999888876544 45566666665543
No 102
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.74 E-value=1.3e+02 Score=29.87 Aligned_cols=53 Identities=9% Similarity=0.174 Sum_probs=0.0
Q ss_pred ChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHHHHHhhh
Q 009406 111 NPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDR 165 (535)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me~~~~~~ 165 (535)
.|-+|++ +..|++||++|+++|+.+++++-...+.+++.+........-.+.+
T Consensus 88 ~p~~~~r--lp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~ 140 (206)
T PRK10884 88 TPSLRTR--VPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEE 140 (206)
T ss_pred CccHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 103
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=32.31 E-value=2.1e+02 Score=26.74 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=31.0
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHH
Q 009406 114 ARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (535)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me 159 (535)
+-+.+++..|++|+...+..|.+....+..-+..+...-..+.+.+
T Consensus 37 ~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~ 82 (160)
T PF13094_consen 37 AANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEE 82 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777777777777777777665555555443
No 104
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=31.58 E-value=54 Score=27.02 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhh
Q 009406 121 GTMKKELAELQEDLAQAHRQVHISEARVATAL 152 (535)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l 152 (535)
=+||++|...+.||+.|=||- -..-||-.-|
T Consensus 25 f~LRk~l~~~rqELs~aLYq~-DAA~RViArl 55 (70)
T PF08606_consen 25 FTLRKQLDQTRQELSHALYQH-DAACRVIARL 55 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHH
Confidence 379999999999999999984 3444554333
No 105
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=30.68 E-value=1.5e+02 Score=31.19 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=9.7
Q ss_pred ceEEeeecCCCCCCCeEEEEECCe
Q 009406 217 FWFPVAFSTDLKDDTMVPFDCFEE 240 (535)
Q Consensus 217 ~W~~va~s~eL~~g~~~~~~l~g~ 240 (535)
+|-.+..+ |..+.+.+.+.
T Consensus 293 gw~~~~~~-----~~~l~~~~~~~ 311 (325)
T PF08317_consen 293 GWKIVSIS-----GSTLEFRYKDE 311 (325)
T ss_pred CcEEEEEe-----CCeEEEEEcCE
Confidence 45554443 44556665555
No 106
>PRK00736 hypothetical protein; Provisional
Probab=30.61 E-value=95 Score=25.23 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=8.6
Q ss_pred chhHHHHHHHH-HHHHHhhCh
Q 009406 93 RQDVLTIMLLH-EKVVEVLNP 112 (535)
Q Consensus 93 ~~~~~~~~~~~-~~~~~~~~~ 112 (535)
|-+-|-+..+| ++.+|.||.
T Consensus 6 Ri~~LE~klafqe~tie~Ln~ 26 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSD 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 33344333333 445555554
No 107
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=30.40 E-value=1.6e+02 Score=35.18 Aligned_cols=80 Identities=25% Similarity=0.334 Sum_probs=51.9
Q ss_pred CceeehHhHHHHhhhcceeeccccchhHH-HHHHHHHHHHHhhChhhh-------hccchhhHHHHHHHHHHHHHHHHHH
Q 009406 69 GKFLDVNQALEVARYDIQYCDWRARQDVL-TIMLLHEKVVEVLNPLAR-------DYKSIGTMKKELAELQEDLAQAHRQ 140 (535)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (535)
-||=|+-+-+|..+-+|. |+- -+..++++|+++=+..-| ..+.+..||.||+.|+.|+++....
T Consensus 445 ~K~~di~kQle~~~~s~~--------~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 445 RKYDDIQKQLESAEQSID--------DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666777766665 333 455788888887666655 2345778999999999999988887
Q ss_pred HhhhHhhHHHhhhhHH
Q 009406 141 VHISEARVATALDKLA 156 (535)
Q Consensus 141 ~~~s~~r~~~~l~~~~ 156 (535)
+-.+..+=..-+.++.
T Consensus 517 ~~~~~qs~~~~~~~l~ 532 (980)
T KOG0980|consen 517 LSNLAQSHNNQLAQLE 532 (980)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4444333333333333
No 108
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=30.16 E-value=1.8e+02 Score=22.49 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=22.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhh
Q 009406 118 KSIGTMKKELAELQEDLAQAHRQVHIS 144 (535)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~s 144 (535)
+|...|.++|++|.+||.+.+.|-...
T Consensus 5 ~s~~EL~~~l~~lr~eLf~Lr~~~~~~ 31 (55)
T TIGR00012 5 KSKEELAKKLDELKKELFELRFQKATG 31 (55)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 678999999999999999988664443
No 109
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=28.82 E-value=1.2e+02 Score=31.37 Aligned_cols=51 Identities=16% Similarity=0.306 Sum_probs=32.8
Q ss_pred HHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhh
Q 009406 104 EKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDK 154 (535)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~ 154 (535)
+...+..+-....++...+|++|-+.|.+|+++...+.......+++...+
T Consensus 52 ~~p~~~~~~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~r 102 (283)
T TIGR00219 52 NRPREVFDGISENLKDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVR 102 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777888888888888888887755544433333343333
No 110
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=28.57 E-value=71 Score=32.98 Aligned_cols=58 Identities=26% Similarity=0.434 Sum_probs=44.7
Q ss_pred cccccccccccccccceE-EEEEecCCCccccccCcceeeeeecCCCCCCCccCCceee
Q 009406 16 LYRPAKINTKKSVRGGFR-VFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLD 73 (535)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (535)
.|..+.+.-.|-+||||- +|-.||.=|.+..-.-+....+.||++-+..|.+..-+.|
T Consensus 59 ~S~kA~f~ppKpIRGGIP~~FPQFG~~g~l~qHGFaRn~~W~v~~~p~~lp~~~~a~Vd 117 (305)
T KOG1594|consen 59 VSTKAIFKPPKPIRGGIPICFPQFGNFGSLPQHGFARNRFWEVENNPPPLPSLGKATVD 117 (305)
T ss_pred echhhhcCCCCcccCCcceEeeccCCCCcccccccccceeeEeccCCCCCCcCCceeEE
Confidence 344567788899999996 6899998777766666666777899999999976666665
No 111
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=28.43 E-value=96 Score=29.46 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHh--hhhHHHHHH
Q 009406 120 IGTMKKELAELQEDLAQAHRQVHISEARVATA--LDKLAYMEA 160 (535)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~--l~~~~~me~ 160 (535)
...|++||+.|+++++.|..+=-+||+|=.+. -.|+.++++
T Consensus 36 ~~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~ 78 (160)
T PRK06342 36 LKALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAA 78 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999988888888654432 245666554
No 112
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=27.81 E-value=18 Score=31.26 Aligned_cols=52 Identities=4% Similarity=0.082 Sum_probs=39.7
Q ss_pred ccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCC
Q 009406 212 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLH 267 (535)
Q Consensus 212 ~~~~~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls 267 (535)
+.+.-.||.+.. .+|+-..++.+|+.+...-+......+|...-|++|+.++
T Consensus 3 ~dl~g~WYVLe~----~pGEHLvlealgqrls~iWtS~~~A~~F~~~~p~~GM~V~ 54 (103)
T PF11572_consen 3 PDLSGTWYVLED----EPGEHLVLEALGQRLSGIWTSRELAQAFLARHPELGMRVS 54 (103)
T ss_dssp --TSSSEEEEES----STT-BEEEEETTEEEEEEBSSHHHHHHHHHTSTSS--EEE
T ss_pred CCcccceEEecC----CCCceeeHHHHhhhHHhheecHHHHHHHHHhCcccCcEee
Confidence 456778999865 4899999999999999888777777888999999887655
No 113
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.52 E-value=1.7e+02 Score=33.42 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHH
Q 009406 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 156 (535)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~ 156 (535)
.+.+.++|+.+-|+-|-----+.+.|+++++.++++|.+|=.+++.++......|.+..
T Consensus 322 ~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v 380 (557)
T COG0497 322 DLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEV 380 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44477888888888877666678999999999999999999998888877777776643
No 114
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=26.87 E-value=46 Score=30.73 Aligned_cols=29 Identities=24% Similarity=0.652 Sum_probs=24.5
Q ss_pred EeecCCCCCCCCCCCcccCCeeeccCCCeeEc
Q 009406 255 VQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS 286 (535)
Q Consensus 255 ~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd 286 (535)
+...||-=|+||.. .+|.+.||-||.++.
T Consensus 27 L~~hCp~Cg~PLF~---KdG~v~CPvC~~~~~ 55 (131)
T COG1645 27 LAKHCPKCGTPLFR---KDGEVFCPVCGYREV 55 (131)
T ss_pred HHhhCcccCCccee---eCCeEECCCCCceEE
Confidence 45679999999997 678999999997664
No 115
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=26.21 E-value=1.3e+02 Score=27.25 Aligned_cols=47 Identities=13% Similarity=0.300 Sum_probs=29.2
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHH
Q 009406 113 LARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (535)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me 159 (535)
|.....+|..|+..|.++++++...+..+...+..|+..|.....+.
T Consensus 64 L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~ 110 (133)
T PF06148_consen 64 LVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELR 110 (133)
T ss_dssp ----------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444567778888888888888888888888888888877766643
No 116
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=25.92 E-value=81 Score=28.16 Aligned_cols=7 Identities=29% Similarity=1.232 Sum_probs=3.4
Q ss_pred cceeecc
Q 009406 84 DIQYCDW 90 (535)
Q Consensus 84 ~~~~~~~ 90 (535)
.|.|||-
T Consensus 38 ~vtf~~l 44 (118)
T PF13815_consen 38 NVTFCDL 44 (118)
T ss_pred hcceecc
Confidence 4555544
No 117
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=25.73 E-value=2.7e+02 Score=24.50 Aligned_cols=65 Identities=12% Similarity=0.138 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHHHHH
Q 009406 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALV 162 (535)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me~~~ 162 (535)
.|.+-..|-+.++.-...|.+.......+|..|+.++...+....-.+..|..-..=-.+|+.++
T Consensus 54 flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~ 118 (126)
T PF13863_consen 54 FLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVV 118 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45577888899999999999999999999999999999998888888888776665555555544
No 118
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.61 E-value=2.8e+02 Score=29.86 Aligned_cols=74 Identities=19% Similarity=0.365 Sum_probs=36.4
Q ss_pred hhcceeeccccchhHH----------------HHHHHHHHHHHhhChh-hhhcc---chhhHHHHHHHHHHHHHHHHHHH
Q 009406 82 RYDIQYCDWRARQDVL----------------TIMLLHEKVVEVLNPL-ARDYK---SIGTMKKELAELQEDLAQAHRQV 141 (535)
Q Consensus 82 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 141 (535)
|-|- .|||++-|-. .+.-+|..+-..|.-+ .||+. .+..|..+...+|++|++++.+-
T Consensus 212 ~~d~--kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y 289 (359)
T PF10498_consen 212 RADA--KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKY 289 (359)
T ss_pred cCCc--chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4554 7999986643 1113344444444333 23333 12334445555556666666665
Q ss_pred hhhHhhHHHhhhhHHH
Q 009406 142 HISEARVATALDKLAY 157 (535)
Q Consensus 142 ~~s~~r~~~~l~~~~~ 157 (535)
......|+.-...|++
T Consensus 290 ~~~s~~V~~~t~~L~~ 305 (359)
T PF10498_consen 290 KQASEGVSERTRELAE 305 (359)
T ss_pred HHHhhHHHHHHHHHHH
Confidence 5555555533333333
No 119
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=25.52 E-value=3.1e+02 Score=27.54 Aligned_cols=69 Identities=22% Similarity=0.185 Sum_probs=52.8
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHHHHHhhhhhcc
Q 009406 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQD 169 (535)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me~~~~~~~l~~ 169 (535)
.+|+++.+.=+|.--=.-.|+.++++|..+...++++..+.+.++.++.....+...+++-....+..|
T Consensus 14 ~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g 82 (225)
T COG1842 14 NINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAG 82 (225)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 467777777777633233489999999999999999999999999999988888877765544444443
No 120
>PRK14147 heat shock protein GrpE; Provisional
Probab=25.34 E-value=1.8e+02 Score=28.00 Aligned_cols=39 Identities=13% Similarity=0.313 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHH
Q 009406 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (535)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~m 158 (535)
+..|++|+++|++.|.++......-..|...........
T Consensus 27 l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~ 65 (172)
T PRK14147 27 VESLRSEIALVKADALRERADLENQRKRIARDVEQARKF 65 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999998877776553
No 121
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=23.96 E-value=74 Score=31.32 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 009406 122 TMKKELAELQEDLAQAHRQVHI 143 (535)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ 143 (535)
.||+||++|++++.++......
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4999999999999999998876
No 122
>PF04698 Rab_eff_C: Rab effector MyRIP/melanophilin C-terminus; InterPro: IPR006788 MOBP is abundantly expressed in central nervous system myelin, and shares several characteristics with myelin basic protein (MBP), in terms of regional distribution and function. MOBP has been shown to be essential for normal arrangement of the radial component in central nervous system myelin [, ].
Probab=23.91 E-value=1.7e+02 Score=34.09 Aligned_cols=49 Identities=33% Similarity=0.455 Sum_probs=42.0
Q ss_pred hChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHH
Q 009406 110 LNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (535)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me 159 (535)
|..-||-.. -+|--.||.+|.++++.|-.|||-+|..|+.+-+|++-|.
T Consensus 573 le~~a~~~~-~~t~d~el~~le~~va~aaa~vq~~e~~~s~i~~ri~al~ 621 (714)
T PF04698_consen 573 LEECARQIH-SGTTDSELSELEDQVASAAAQVQQAESEVSDIESRIAALS 621 (714)
T ss_pred HHHhhhccc-CCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445566655 3688899999999999999999999999999999998864
No 123
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=23.24 E-value=1.4e+02 Score=25.98 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHH
Q 009406 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQA 137 (535)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (535)
++++.|.+.-|.||-=.|-+- |+=||+-|--||.++..-
T Consensus 41 ~~EeF~~~Lq~~lns~~qP~l-vPFLK~slp~Lr~~l~~~ 79 (92)
T smart00549 41 TAEEFTSRLQEALNSPLQPYL-IPFLKNSLPLLRRELLHC 79 (92)
T ss_pred CHHHHHHHHHHHHcCCCCchh-HHHHHHhhHHHHHHHHHH
Confidence 889999999999999999887 899999999999888653
No 124
>COG5570 Uncharacterized small protein [Function unknown]
Probab=22.95 E-value=1.2e+02 Score=23.68 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=33.1
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHh
Q 009406 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (535)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (535)
.+-+++-|.+|.=+-|-..|..||+.-..|.||+.+-..|.|
T Consensus 16 ~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~~~ 57 (57)
T COG5570 16 NLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQMH 57 (57)
T ss_pred hHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 456778888888888888888888888888888877666654
No 125
>PRK14164 heat shock protein GrpE; Provisional
Probab=22.63 E-value=2.1e+02 Score=28.76 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=34.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHH
Q 009406 118 KSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (535)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~ 157 (535)
.-+..|++||++|.+.|.++.....+...|..........
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~ 116 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIE 116 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999999999999999999999877666544
No 126
>PRK11637 AmiB activator; Provisional
Probab=22.38 E-value=3e+02 Score=29.92 Aligned_cols=56 Identities=23% Similarity=0.282 Sum_probs=27.7
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHHH
Q 009406 105 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (535)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me~ 160 (535)
+.-++.+.+..=...+..+.++|..+++++.+...++-..+..+...-.++...++
T Consensus 69 ~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 69 QRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344555555555555555555555555555555555555443
No 127
>PRK02119 hypothetical protein; Provisional
Probab=22.02 E-value=1.7e+02 Score=24.14 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=7.5
Q ss_pred chhHHHHHHHH-HHHHHhhC
Q 009406 93 RQDVLTIMLLH-EKVVEVLN 111 (535)
Q Consensus 93 ~~~~~~~~~~~-~~~~~~~~ 111 (535)
|-+-|-+..+| ++.+|.||
T Consensus 10 Ri~~LE~rla~QE~tie~LN 29 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELN 29 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444333333 33444444
No 128
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=21.52 E-value=4.2e+02 Score=25.27 Aligned_cols=90 Identities=12% Similarity=0.260 Sum_probs=45.7
Q ss_pred ceeehHhHHHHhhhcc-------eeeccc------cch--h-HHHHHHHHHHHHHhhChhhhh-ccchhhHHHHHHHHHH
Q 009406 70 KFLDVNQALEVARYDI-------QYCDWR------ARQ--D-VLTIMLLHEKVVEVLNPLARD-YKSIGTMKKELAELQE 132 (535)
Q Consensus 70 ~~~~~~~~~~~~~~~~-------~~~~~~------~~~--~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 132 (535)
++--||+|.++++=++ +---.. +.. + |..+|++|++++++-+. .+ ...+..|++++....+
T Consensus 50 ~s~~iN~AY~~L~dp~~Ra~Yll~l~g~~~~~~~~~~~d~efLme~me~rE~le~~~~~--~d~~~~l~~l~~~~~~~~~ 127 (171)
T PRK05014 50 QAATINDAYQTLKHPLKRAEYLLSLHGFDLAHEQHTVRDTAFLMEQMELREELEDIEQS--KDPEAALESFIKRVKKMFK 127 (171)
T ss_pred HHHHHHHHHHHHCChhHHHHHHHHhcCCccccccCCcCCHHHHHHHHHHHHHHHhhccc--cCHHHHHHHHHHHHHHHHH
Confidence 5667999998876433 211111 111 2 23789999999877432 11 1224444444443333
Q ss_pred ----HHHHHHHHHhhhHhhHHHhhhhHHHHHHHHh
Q 009406 133 ----DLAQAHRQVHISEARVATALDKLAYMEALVN 163 (535)
Q Consensus 133 ----~~~~~~~~~~~s~~r~~~~l~~~~~me~~~~ 163 (535)
++.++=..-+. ......+.||-++.++..
T Consensus 128 ~~~~~l~~~~~~~d~--~~A~~~~~~Lky~~kl~~ 160 (171)
T PRK05014 128 TRLQQMVEQLDNEAW--DAAADTVRKLKFLDKLRS 160 (171)
T ss_pred HHHHHHHHHHhhCCH--HHHHHHHHHHHHHHHHHH
Confidence 33333211111 234456667777665543
No 129
>PRK09039 hypothetical protein; Validated
Probab=21.49 E-value=3.3e+02 Score=29.01 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-------HhhhHhhHHHhh
Q 009406 120 IGTMKKELAELQEDLAQAHRQ-------VHISEARVATAL 152 (535)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~-------~~~s~~r~~~~l 152 (535)
|..||+||+.||++|..+..+ +.-.+.++..+|
T Consensus 146 I~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 146 IAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666555555554444 444444444554
No 130
>PRK14139 heat shock protein GrpE; Provisional
Probab=21.22 E-value=2.4e+02 Score=27.56 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHH
Q 009406 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (535)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~m 158 (535)
+..|++++++|++.|.++.....+-..|.+.....+...
T Consensus 41 l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~ 79 (185)
T PRK14139 41 LAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKF 79 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999877766553
No 131
>PRK13723 conjugal transfer pilus assembly protein TraH; Provisional
Probab=20.75 E-value=3.4e+02 Score=30.17 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhh-------HHHHHHHHhhhh
Q 009406 95 DVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDK-------LAYMEALVNDRL 166 (535)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~-------~~~me~~~~~~~ 166 (535)
|+.+...+..-+.|+|+..-.-....+.-.+.+..++|++.+|..++.-.++++.+..+. +.+||+.+..++
T Consensus 361 ~~IA~dll~~yL~~~l~~~~~al~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~eqq~~~~~ 439 (451)
T PRK13723 361 DYIGYDILLQYIQELIQQARAMLATGNYPEAVMDHLRENLNQAQRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARM 439 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444443322222112224445555555555555555555554433222 555555555444
No 132
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=20.72 E-value=6.4e+02 Score=22.85 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=25.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHHHHHhh
Q 009406 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVND 164 (535)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me~~~~~ 164 (535)
-+..|+++++.|+..|.-+=+=.=--.-+|..--..+.+|+.+-+.
T Consensus 69 ~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 69 EVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777666655443333344444444555555555443
No 133
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.68 E-value=75 Score=30.60 Aligned_cols=20 Identities=15% Similarity=0.501 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 009406 121 GTMKKELAELQEDLAQAHRQ 140 (535)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~ 140 (535)
..+++|++.|.+|+.++...
T Consensus 157 ~~~~~ei~~lk~el~~~~~~ 176 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKE 176 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 34556666666666664433
No 134
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=20.07 E-value=5.4e+02 Score=23.59 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=27.4
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhH
Q 009406 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 155 (535)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~ 155 (535)
.+.+++..+-+-+..-.+.+.++...+..+.+|+++....+....+.-++.+.|.
T Consensus 84 ~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkk 138 (151)
T PF11559_consen 84 ELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKK 138 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555555555555666555555555555444555443
Done!