Query 009406
Match_columns 535
No_of_seqs 327 out of 2228
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 04:28:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gke_A DDMC; rieske cluster, n 100.0 5.3E-52 1.8E-56 433.1 22.6 306 211-528 2-341 (349)
2 2zyl_A Possible oxidoreductase 100.0 4.1E-43 1.4E-47 370.7 24.4 299 211-524 19-338 (386)
3 3n0q_A Putative aromatic-ring 100.0 3.2E-42 1.1E-46 366.2 25.0 311 176-523 17-398 (409)
4 2de6_A Terminal oxygenase comp 100.0 1.4E-42 4.9E-47 366.9 20.6 301 209-528 20-378 (392)
5 1z01_A 2-OXO-1,2-dihydroquinol 100.0 1.1E-41 3.7E-46 366.0 27.0 309 184-527 25-409 (446)
6 3vca_A Ring-hydroxylating diox 100.0 5.2E-42 1.8E-46 364.8 23.0 311 176-523 19-401 (412)
7 3gkq_A Terminal oxygenase comp 100.0 5.1E-38 1.8E-42 329.2 22.3 302 209-528 23-379 (389)
8 3gcf_A Terminal oxygenase comp 100.0 6.5E-38 2.2E-42 329.2 22.3 304 209-531 26-385 (394)
9 2gbw_A Biphenyl 2,3-dioxygenas 100.0 6E-36 2.1E-40 321.9 19.7 180 176-374 13-217 (454)
10 2bmo_A Oxygenase-alpha NBDO; n 100.0 2.5E-36 8.6E-41 324.2 16.4 180 177-375 12-217 (447)
11 2b1x_A Naphthalene dioxygenase 100.0 1.1E-35 3.8E-40 321.2 19.3 181 175-374 20-226 (470)
12 3gzx_A Biphenyl dioxygenase su 100.0 3.8E-35 1.3E-39 315.6 12.7 182 175-375 32-245 (457)
13 1uli_A Biphenyl dioxygenase la 100.0 3.2E-34 1.1E-38 309.1 14.8 179 176-373 31-234 (460)
14 2qpz_A Naphthalene 1,2-dioxyge 99.9 2.4E-26 8E-31 198.7 12.1 101 216-321 2-103 (103)
15 1fqt_A Rieske-type ferredoxin 99.9 5.3E-26 1.8E-30 199.7 13.3 103 216-323 4-108 (112)
16 1vm9_A Toluene-4-monooxygenase 99.9 3.3E-26 1.1E-30 200.6 11.6 104 217-325 1-106 (111)
17 2i7f_A Ferredoxin component of 99.9 1.6E-26 5.6E-31 201.5 9.4 102 217-323 3-106 (108)
18 2de6_D Ferredoxin component of 99.9 2.4E-26 8.1E-31 203.2 9.4 104 215-323 2-107 (115)
19 3dqy_A Toluene 1,2-dioxygenase 99.9 3.3E-26 1.1E-30 198.9 8.9 101 217-322 1-102 (106)
20 3gce_A Ferredoxin component of 99.9 2.4E-25 8.1E-30 198.5 11.9 102 217-323 10-114 (121)
21 2jo6_A Nitrite reductase [NAD( 99.9 2E-25 6.9E-30 196.2 11.0 100 217-321 6-112 (113)
22 3c0d_A Putative nitrite reduct 99.9 1.4E-25 4.7E-30 199.4 9.9 103 216-323 4-112 (119)
23 2jza_A Nitrite reductase [NAD( 99.9 6.8E-25 2.3E-29 198.0 13.2 103 217-324 3-112 (130)
24 3d89_A Rieske domain-containin 99.9 2.3E-25 7.7E-30 207.2 6.2 110 214-324 13-137 (157)
25 4aiv_A Probable nitrite reduct 99.9 8.7E-25 3E-29 194.7 8.9 101 216-321 8-116 (119)
26 4aay_B AROB; oxidoreductase, r 99.9 4.7E-23 1.6E-27 195.1 8.1 146 153-319 2-161 (175)
27 1rie_A Rieske iron-sulfur prot 99.8 7.3E-21 2.5E-25 171.5 11.1 97 217-318 5-128 (129)
28 1rfs_A Rieske protein; iron-su 99.8 7.1E-21 2.4E-25 173.8 6.2 101 216-321 20-124 (139)
29 1g8k_B Arsenite oxidase; molyb 99.8 3.5E-20 1.2E-24 168.0 9.3 98 217-319 7-119 (133)
30 3azc_A Cytochrome B6-F complex 99.6 2.1E-20 7.3E-25 169.4 0.0 97 222-323 21-121 (133)
31 3cx5_E Cytochrome B-C1 complex 99.7 7.4E-18 2.5E-22 160.9 11.7 99 215-318 60-184 (185)
32 2qjy_C Ubiquinol-cytochrome C 99.7 1.6E-17 5.4E-22 158.8 12.5 97 217-318 48-186 (187)
33 1pp9_E Ubiquinol-cytochrome C 99.7 1.1E-17 3.9E-22 160.9 10.8 94 221-318 75-195 (196)
34 2nwf_A Ubiquinol-cytochrome C 99.7 1.7E-17 5.9E-22 151.8 10.6 93 222-318 6-140 (141)
35 1nyk_A Rieske iron-sulfur prot 99.7 1.4E-17 4.8E-22 156.2 8.8 98 223-325 26-151 (165)
36 1vf5_D Rieske iron-sulfur prot 99.7 7.9E-18 2.7E-22 159.8 2.8 92 224-320 70-164 (179)
37 1jm1_A Rieske iron-sulfur prot 99.6 1.3E-16 4.4E-21 154.4 0.6 85 233-321 56-167 (204)
38 3pp5_A BRK1, protein brick1; t 75.5 6.6 0.00023 31.4 6.2 57 88-150 14-70 (73)
39 3p8c_E Probable protein brick1 69.0 7.2 0.00025 31.3 5.0 57 88-150 14-70 (75)
40 3bvo_A CO-chaperone protein HS 65.8 14 0.00047 35.1 7.3 88 69-163 91-198 (207)
41 1fpo_A HSC20, chaperone protei 65.4 13 0.00043 34.2 6.7 90 69-162 49-158 (171)
42 3uo3_A J-type CO-chaperone JAC 65.0 26 0.00088 32.5 8.9 94 67-163 54-168 (181)
43 3hho_A CO-chaperone protein HS 50.5 42 0.0014 30.7 7.5 91 69-163 52-163 (174)
44 3j21_W 50S ribosomal protein L 43.2 57 0.0019 25.7 6.2 48 118-165 9-61 (72)
45 3caz_A BAR protein; thermo-aci 41.8 6.2 0.00021 37.2 0.4 63 51-132 62-126 (294)
46 2yy0_A C-MYC-binding protein; 37.5 36 0.0012 25.3 4.0 30 120-149 21-50 (53)
47 2l5g_A GPS2 protein, G protein 36.5 31 0.0011 23.8 3.1 29 114-142 4-32 (38)
48 2z5i_A TM, general control pro 34.4 40 0.0014 24.9 3.8 37 119-155 13-49 (52)
49 3twe_A Alpha4H; unknown functi 34.2 48 0.0016 20.7 3.4 21 121-141 4-24 (27)
50 3u1c_A Tropomyosin alpha-1 cha 34.1 1E+02 0.0036 25.6 6.8 37 120-156 46-82 (101)
51 3mq9_A Bone marrow stromal ant 33.9 93 0.0032 32.3 8.0 60 101-160 377-450 (471)
52 4emc_A Monopolin complex subun 32.0 72 0.0024 29.9 5.9 55 101-155 17-71 (190)
53 3g80_A Protein B2; RNA-binding 31.8 93 0.0032 25.6 5.8 41 99-142 37-77 (97)
54 3u59_A Tropomyosin beta chain; 31.1 1.2E+02 0.0043 25.0 6.8 37 120-156 46-82 (101)
55 1vq8_V 50S ribosomal protein L 30.8 1.4E+02 0.0047 23.4 6.6 46 118-163 12-62 (71)
56 2jee_A YIIU; FTSZ, septum, coi 30.7 1.3E+02 0.0045 24.4 6.5 36 100-135 9-44 (81)
57 3v2d_2 50S ribosomal protein L 30.3 1.4E+02 0.0047 23.4 6.5 27 118-144 16-42 (72)
58 3hnw_A Uncharacterized protein 29.5 1.7E+02 0.0057 25.8 7.7 44 117-160 88-131 (138)
59 4a17_U RPL35, 60S ribosomal pr 28.4 1.3E+02 0.0045 26.2 6.6 27 118-144 13-39 (124)
60 3azd_A Short alpha-tropomyosin 28.1 22 0.00074 24.6 1.3 25 119-143 5-29 (37)
61 4i0x_B ESAT-6-like protein MAB 27.8 1.6E+02 0.0055 23.9 7.0 38 120-157 34-81 (103)
62 1r73_A TM1492, 50S ribosomal p 27.5 1.4E+02 0.0049 22.9 6.0 46 118-163 9-58 (66)
63 2rjz_A PILO protein; structura 26.9 1E+02 0.0035 27.3 5.9 43 114-157 11-53 (147)
64 2wuj_A Septum site-determining 26.7 36 0.0012 25.6 2.4 33 105-140 24-56 (57)
65 2zkr_v 60S ribosomal protein L 26.3 1.3E+02 0.0044 26.3 6.2 49 118-166 12-65 (123)
66 3a7o_A Autophagy protein 16; c 25.7 1.4E+02 0.0049 23.5 5.6 34 120-157 20-53 (75)
67 3u1c_A Tropomyosin alpha-1 cha 25.6 2E+02 0.0069 23.8 7.2 46 101-149 37-82 (101)
68 2r2v_A GCN4 leucine zipper; co 25.4 71 0.0024 21.6 3.3 25 101-132 5-29 (34)
69 2zjr_V 50S ribosomal protein L 22.3 1.6E+02 0.0054 22.7 5.4 47 118-164 9-59 (67)
70 3iz5_c 60S ribosomal protein L 21.4 2E+02 0.0067 25.1 6.4 27 118-144 14-40 (124)
71 1oeg_A Apolipoprotein E; siali 21.1 39 0.0013 21.6 1.3 18 120-137 3-20 (26)
72 3u59_A Tropomyosin beta chain; 20.6 2.9E+02 0.0099 22.7 7.2 57 98-157 34-96 (101)
73 1z23_A CRK-associated substrat 20.2 1E+02 0.0034 28.3 4.4 63 72-134 7-105 (163)
74 2h8b_A Insulin-like 3; insulin 20.2 19 0.00064 22.8 -0.3 8 92-99 16-23 (26)
75 3ghg_A Fibrinogen alpha chain; 20.1 1.4E+02 0.0048 32.2 6.1 41 122-162 114-154 (562)
No 1
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=5.3e-52 Score=433.06 Aligned_cols=306 Identities=24% Similarity=0.438 Sum_probs=236.3
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcCCCC
Q 009406 211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 290 (535)
Q Consensus 211 ~~~~~~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~dG~ 290 (535)
...+++.||+||+++|| +|+++.++++|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.||+
T Consensus 2 ~~~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G~ 80 (349)
T 3gke_A 2 ATFVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGGQ 80 (349)
T ss_dssp CCCCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTCC
T ss_pred CcccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCCC
Confidence 45678999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC-cc--cccccccccceEEecCcEEEcCCCCC-CC-CCCCCCC--CCCCceeeeEEEEEeecchhhHhhhcCCCC
Q 009406 291 CEKMPS-TQ--LRNVKIKSLPCFEQEGMIWIWPGDEP-PT-ATIPCLL--PPSGFEIHAEIVMELPIEHGLLLDNLLDLA 363 (535)
Q Consensus 291 c~~iP~-~~--~~~~~L~~~pv~e~~G~IwV~l~~~~-p~-~~lp~~~--~~~~~~~~~~~~~~~~~nwk~~~EN~lD~~ 363 (535)
|+.+|+ .. ....+|++|||++++|+||||+++++ +. ..+|++. ..+++... ...++++||||+++||++|+|
T Consensus 81 ~~~~P~~~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~~ 159 (349)
T 3gke_A 81 CVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIPDFGCRVDPAYRTV-GGYGHVDCNYKLLVDNLMDLG 159 (349)
T ss_dssp EEECCSTTCCCCGGGCCCBCCEEEETTEEEECCSCGGGCCGGGSCCCGGGGCTTSEEE-EEEEEESSCHHHHHHHHHCGG
T ss_pred ccccCccccccccccccceeeEEEECCEEEEeeCCCCCCcccccCCccccCCCCCEEE-eEEEEEecCHHhHHHhccccc
Confidence 999995 21 13578999999999999999998754 21 1245442 23466654 456789999999999999999
Q ss_pred CCCCcCccccccCCC--CCceeeeecCCCCC-----------Ccccc------CCC----ceeEEcCceeEEEEeeecCC
Q 009406 364 HAPFTHTSTFAKGWS--VPSLVKFLTPASGL-----------QGYWD------PYP----IDMEFRPPCMVLSTIGISKP 420 (535)
Q Consensus 364 H~~~vH~~t~~~~~~--vp~~v~~~~~~~~~-----------~g~~~------~~~----~~~~f~~P~~v~~~~g~~~p 420 (535)
|++++|+++++.... ++..++. ++ .++ ..+|. ... ..++|.+|+++...+++..+
T Consensus 160 H~~~~H~~~~~~~~~~~~~~~v~~-~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~~~~~~~~~~ 237 (349)
T 3gke_A 160 HAQYVHRANAQTDAFDRLEREVIV-GD-GEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNFIAVAPE 237 (349)
T ss_dssp GHHHHTHHHHCCTTGGGCEEEEEE-CS-SEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEEEEEEEEEET
T ss_pred cchhccchhhcCccccCCCCEEEE-cC-CEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEEEEEEecccC
Confidence 999999999986532 2221111 10 000 01111 001 35788899998777776655
Q ss_pred CCcCCCCcccccceeEEEEEEecCCCCeeEeeeeeeccchhhccCchhHHHHHHHHHHHHH-hhHHHHHHHHhhhccCCC
Q 009406 421 GKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVL-NEDLRLVLGQQERMNNGA 499 (535)
Q Consensus 421 g~~~~~~~~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~~~~~p~~~~~~~~f~~~V~-~ED~~IlE~qQ~~l~~g~ 499 (535)
|.. .....++..++.++|+++++||++|.+++||..++ +.+...+..+..+|| +||+.|||+||+++.+..
T Consensus 238 g~p-----~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d---~~~~~~~~~~~~~if~~ED~~ile~Qq~~l~~~~ 309 (349)
T 3gke_A 238 GTP-----KEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDD---PEMDGVLRSWQAQALVKEDKVVVEAIERRRAYVE 309 (349)
T ss_dssp TSC-----GGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTC---HHHHHHHHHHHHHHTTTHHHHHHHHHHHTHHHHH
T ss_pred CCC-----CCCceEEEEEEEEecCCCCeEEEEEEEEecCccCc---hhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhcCC
Confidence 531 12234567789999999999999999999987543 333455667888999 999999999999987632
Q ss_pred --CcCCCCccCChHHHHHHHHHHHHH-cCCCC
Q 009406 500 --NVWNLPVGYDKLGVRYRLWRDALE-KGAKQ 528 (535)
Q Consensus 500 --~~~~l~~~aD~~~v~yRrwl~~l~-~g~~~ 528 (535)
...++++.+|+++++||||++++. +++.+
T Consensus 310 ~~~~~~~~~~~D~~~v~~Rr~l~~l~~~e~~~ 341 (349)
T 3gke_A 310 ANGIRPAMLSCDEAAVRVSREIEKLEQLEAAR 341 (349)
T ss_dssp HTTCCCCCCGGGHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHHHHh
Confidence 234589999999999999988663 33333
No 2
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.1e-43 Score=370.67 Aligned_cols=299 Identities=16% Similarity=0.282 Sum_probs=211.9
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcCCCC
Q 009406 211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 290 (535)
Q Consensus 211 ~~~~~~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~dG~ 290 (535)
+..|.+.|++||++++|++|+++.++++|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+
T Consensus 19 ~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~~~~~i~CpyHgw~f~~~G~ 98 (386)
T 2zyl_A 19 PTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVACPFHDWRWGGDGR 98 (386)
T ss_dssp CSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEEETTEEECTTTCCEEETTSB
T ss_pred chhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcccCCEEEeCCCCCEECCCCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccc--ccccccccceEEecCcEEEcCCCCC-CC---CCCCCCCC--CCCceeeeEEEEEee-cchhhHhhhcCC
Q 009406 291 CEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEP-PT---ATIPCLLP--PSGFEIHAEIVMELP-IEHGLLLDNLLD 361 (535)
Q Consensus 291 c~~iP~~~~--~~~~L~~~pv~e~~G~IwV~l~~~~-p~---~~lp~~~~--~~~~~~~~~~~~~~~-~nwk~~~EN~lD 361 (535)
|+.+|+... ...++++|||++++|+||||++++. ++ ..+|.+.. ..++.......++++ ||||+++||++|
T Consensus 99 ~~~~P~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D 178 (386)
T 2zyl_A 99 CKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDPAVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDNVTD 178 (386)
T ss_dssp EEECTTCSSCCTTCBCCEECEEEETTEEEEEECTTCCCCCGGGCCCCCGGGGCTTBCCCEEEEEEEESSCGGGGGGGGGC
T ss_pred ccccCcccccCcccCcceEeEEEECCEEEEEECCccCCCcccccCcccccccCCCceEEEEEEEEEcCcCHHhHhhhccc
Confidence 999998542 2468999999999999999997642 21 12343322 234544445567889 999999999999
Q ss_pred CCCCCCcCccccccC---CCCCceeeee--cCCCCCC--c-cccC--CCceeEEcCceeEEEEeeecCCCCcCCCCcccc
Q 009406 362 LAHAPFTHTSTFAKG---WSVPSLVKFL--TPASGLQ--G-YWDP--YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQC 431 (535)
Q Consensus 362 ~~H~~~vH~~t~~~~---~~vp~~v~~~--~~~~~~~--g-~~~~--~~~~~~f~~P~~v~~~~g~~~pg~~~~~~~~~~ 431 (535)
+||++++|+++.... ........+. .+..... + .+.. ......|..|++++..+....+|.
T Consensus 179 ~~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~g~--------- 249 (386)
T 2zyl_A 179 MAHFFYIHFGLPTYFKNVFEGHIASQYLHNVGRPDVDDLGTSYGEAHLDSEASYFGPSFMINWLHNRYGNY--------- 249 (386)
T ss_dssp STHHHHTTCEEEEEEEEEEETTEEEEEEEEEECTTSSSCCSSSCCEEEEEEEEEESSSEEEEEEEEEETTE---------
T ss_pred ccchhhhCcCccccccccccCceeEEEecCCCCCchhhcccccCcceeeEEEEEECCeEEEEEeeeccCCc---------
Confidence 999999999764210 0000000110 0000000 0 0000 012245677887665544332221
Q ss_pred cceeEEEEEEecCCCCeeEeeeeeeccchhhcc--CchhHHHHHHHHHHHHHhhHHHHHHHHhhhccCCCCcCCCCccCC
Q 009406 432 ATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLK--HVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYD 509 (535)
Q Consensus 432 ~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~~~--~~p~~~~~~~~f~~~V~~ED~~IlE~qQ~~l~~g~~~~~l~~~aD 509 (535)
......++.++|+++++|++++.+++++.+... ....+...+..+...++.||..|++.||+... .++...|
T Consensus 250 ~~~~~~~~~~~Pv~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vf~ED~~I~e~q~~~~~------p~~~~~D 323 (386)
T 2zyl_A 250 KSESILINCHYPVTQNSFVLQWGVIVEKPKGMSEEMTDKLSRVFTEGVSKGFLQDVEIWKHKTRIDN------PLLVEED 323 (386)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEBCCCCCC--CTHHHHHHHHHHHHHHHHHHHHHHTTCCCCSS------CCCCGGG
T ss_pred ceeEEEEEEEEEccCCEEEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhcccccC------CccCccc
Confidence 112344666799999999999988765432111 11222233445678899999999999875422 2566789
Q ss_pred hHHHHHHHHHHHHHc
Q 009406 510 KLGVRYRLWRDALEK 524 (535)
Q Consensus 510 ~~~v~yRrwl~~l~~ 524 (535)
+++++||+|++++-.
T Consensus 324 ~~~~~fRrw~~~~~~ 338 (386)
T 2zyl_A 324 GAVYQLRRWYEQFYV 338 (386)
T ss_dssp CSHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999887643
No 3
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=3.2e-42 Score=366.18 Aligned_cols=311 Identities=18% Similarity=0.175 Sum_probs=224.8
Q ss_pred ccccCCCCCChhhhHHHhccCCCCcccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEE
Q 009406 176 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 254 (535)
Q Consensus 176 ~~~~~~~~~s~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~W~~va~s~eL~-~g~~~~~~l~g~~vvv~R~~dG~i~A 254 (535)
..++++..+|++.++.|++++| ++.|++||++++|+ +|++++++++|++++|+|+.+|+++|
T Consensus 17 ~~lp~~~Y~d~~~~~~E~~~if-----------------~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A 79 (409)
T 3n0q_A 17 HALDQAFYTDAEVFQTDLQEIF-----------------YKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRA 79 (409)
T ss_dssp BCCCHHHHHCHHHHHHHHHHTT-----------------TTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred ccCCHHHcCCHHHHHHHHHHHH-----------------hcCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEe
Confidence 4577777889999999998875 67888999999997 59999999999999999999999999
Q ss_pred EeecCCCCCCCCCC-CcccCCeeeccCCCeeEcCCCCccccCCcc----cccccccccceEEecCcEEEcCCCCCCCCCC
Q 009406 255 VQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATI 329 (535)
Q Consensus 255 ~~n~CpHRga~Ls~-G~v~~~~l~CPyHGW~Fd~dG~c~~iP~~~----~~~~~L~~~pv~e~~G~IwV~l~~~~p~~~l 329 (535)
|.|+|||||++|+. |.++++.|+||||||+||.||+|+.+|+.. ..+.+|++|||++++|+|||++++++| ++
T Consensus 80 ~~n~C~Hrga~L~~~g~~~~~~i~CpyHgw~fd~dG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~--~l 157 (409)
T 3n0q_A 80 FHNACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCRELAGLIYICLADEAP--DF 157 (409)
T ss_dssp EESCCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CC
T ss_pred ecCcCCcCcCCccCcCccCCCEEEECCCCCEEeCCCCcccCCcCCcccCcccCCCceEEEEEECCEEEEEeCCCCC--Ch
Confidence 99999999999996 888899999999999999999999999753 246789999999999999999987654 34
Q ss_pred CCCCC----------CCCceeeeEEEEEeecchhhHhhhcCCCCCCCCcCccccccCCCC--------------------
Q 009406 330 PCLLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV-------------------- 379 (535)
Q Consensus 330 p~~~~----------~~~~~~~~~~~~~~~~nwk~~~EN~lD~~H~~~vH~~t~~~~~~v-------------------- 379 (535)
+++++ ...+.+.....++++||||+++||++|+||++++|+++++.-...
T Consensus 158 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (409)
T 3n0q_A 158 ERFAEVARPYLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFD 237 (409)
T ss_dssp HHHHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGGTSCCCHHHHSCCCSCCCHHHHHHHH
T ss_pred HHhhhhhhhhhccccCCCeEEeeEEEEEEecchHhhhhhccccccccccCcchhhccccccccccccccccccchhhhhh
Confidence 44321 123444445677899999999999999999999999886531100
Q ss_pred -------Cc-ee-----ee---ecCC-C-----CCCc---c------cc--CCCceeEEcCceeEEEEeeecCCCCcCCC
Q 009406 380 -------PS-LV-----KF---LTPA-S-----GLQG---Y------WD--PYPIDMEFRPPCMVLSTIGISKPGKLEGQ 426 (535)
Q Consensus 380 -------p~-~v-----~~---~~~~-~-----~~~g---~------~~--~~~~~~~f~~P~~v~~~~g~~~pg~~~~~ 426 (535)
+. .+ .+ ..+. . ...+ + +. .......+..||+++...
T Consensus 238 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~----------- 306 (409)
T 3n0q_A 238 RCEQAGMPSGFHLSGDGQFRVARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFL----------- 306 (409)
T ss_dssp HHHHTTCCCCCEECTTSSEEEEEECCSTTCCSSSTTSSCSCSSCSSCCSSSCCCEEEEEETTTEEEEEC-----------
T ss_pred hhhccCCcceeecccccceeeeeecccccccccccCCccccccccCCCcccCCceEEEEECCeEEEEEC-----------
Confidence 00 00 00 0000 0 0000 0 00 001112345666655432
Q ss_pred CcccccceeEEEEEEecCCCCeeEeeeeeeccchhhccCchhHHHHHHHHHHHHHhhHHHHHHHHhhhccCCCCcC-CCC
Q 009406 427 NTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVW-NLP 505 (535)
Q Consensus 427 ~~~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~~~~~p~~~~~~~~f~~~V~~ED~~IlE~qQ~~l~~g~~~~-~l~ 505 (535)
.+.+.++.+.|+++++|++.+.++.........--++ ..+..+...|..||..|||..|+|+.++.... .++
T Consensus 307 ------pd~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~ED~~l~e~~Q~G~~s~~y~~G~~s 379 (409)
T 3n0q_A 307 ------SDHSIVFRVTPISPTETEVTTKWLVHKDAVEGVDYDL-QRLTEVWIATNDEDREVVEFNQMGINSPAYEPGPYS 379 (409)
T ss_dssp ------SSCEEEEEEEEEETTEEEEEEEEEEETTCCBTTTBCH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCBCC
T ss_pred ------CCEEEEEEEEECCCCeEEEEEEEEEcCcccccchhhH-HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCC
Confidence 1234567789999999999988776322110000012 23345678899999999999999999875322 233
Q ss_pred ccCChHHHHHHHHHH-HHH
Q 009406 506 VGYDKLGVRYRLWRD-ALE 523 (535)
Q Consensus 506 ~~aD~~~v~yRrwl~-~l~ 523 (535)
...+.++..|.+|+. ++.
T Consensus 380 ~~~E~~v~~F~~w~~~~l~ 398 (409)
T 3n0q_A 380 PTQESGVLQFVEWYLSTLK 398 (409)
T ss_dssp TTTSHHHHHHHHHHHHHHH
T ss_pred CCccHhHHHHHHHHHHHHH
Confidence 346899999999955 443
No 4
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=1.4e-42 Score=366.90 Aligned_cols=301 Identities=19% Similarity=0.305 Sum_probs=206.6
Q ss_pred CccccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc--cCCeeeccCCCeeEc
Q 009406 209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NEGRIQCPYHGWEYS 286 (535)
Q Consensus 209 ~~~~~~~~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v--~~~~l~CPyHGW~Fd 286 (535)
.....|++.|++||++++|++|+++.++++|++++|+|+ +|+++|+.|+|||||++|+.|.+ +++.|+||||||+||
T Consensus 20 e~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~-~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~ 98 (392)
T 2de6_A 20 DAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI-DGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYR 98 (392)
T ss_dssp HCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE-TTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEE
T ss_pred hhhhhhccccEEEEEHHHCCCCCeEEEEECCEEEEEEEe-CCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEc
Confidence 345568999999999999999999999999999999994 99999999999999999999875 468999999999999
Q ss_pred C-CCCccccCCccc----ccccccccceEEecCcEEEcCCCCCCCCCCCCCC----CCCCceeeeEEEEEeecchhhHhh
Q 009406 287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL----PPSGFEIHAEIVMELPIEHGLLLD 357 (535)
Q Consensus 287 ~-dG~c~~iP~~~~----~~~~L~~~pv~e~~G~IwV~l~~~~p~~~lp~~~----~~~~~~~~~~~~~~~~~nwk~~~E 357 (535)
. +|+|+.+|+.+. ...+|++|||++++|+|||+++++.++ ++++.+ ...++... ....+++||||+++|
T Consensus 99 ~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~-~l~~~l~~~~~~~~~~~~-~~~~~~~~nwk~~~E 176 (392)
T 2de6_A 99 WEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPP-PLARDTPPNFLDDDMEIL-GKNQIIKSNWRLAVE 176 (392)
T ss_dssp TTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSSCC-CGGGGSCTTTTCTTEEEE-EEEEEESSCHHHHHH
T ss_pred CCCCccccccCCccccccccCCCceEeEEEECCEEEEEeCCCCCC-ChhHhccccccCCCeEEE-EEEEEEecChHhhhH
Confidence 6 999999986432 357899999999999999999764322 232211 12455543 346789999999999
Q ss_pred hcCCCCCCCCcCccccccCCC---CCc---------eeeeecCCCC--CCcc---ccC----------------------
Q 009406 358 NLLDLAHAPFTHTSTFAKGWS---VPS---------LVKFLTPASG--LQGY---WDP---------------------- 398 (535)
Q Consensus 358 N~lD~~H~~~vH~~t~~~~~~---vp~---------~v~~~~~~~~--~~g~---~~~---------------------- 398 (535)
|++|+||+ |+|+++++.... .+. ...+...... ..++ +..
T Consensus 177 N~~D~~H~-~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~ 255 (392)
T 2de6_A 177 NGFDPSHI-YIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVREGAYGE 255 (392)
T ss_dssp HHHCGGGG-GGGTTCHHHHHTTBEECSEEECCSCGGGGEEEECCCTTCCCEEEECGGGTCEEECEEEETTEEEEECEECS
T ss_pred hcchhhhh-hhhcchhccccccccccccccccccccceEEeccCCccCCcceeeecCCccccccccccccceeeccccCC
Confidence 99999999 999988643110 000 0000000000 0000 000
Q ss_pred --CCceeEEcCceeEEEEeeecCCCCcCCCCcccccceeEEEEEEecCCCCeeEeeeeeeccchhhccCch-hHHH---H
Q 009406 399 --YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVP-FMQY---L 472 (535)
Q Consensus 399 --~~~~~~f~~P~~v~~~~g~~~pg~~~~~~~~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~~~~~p-~~~~---~ 472 (535)
......+..|+.+... ..|+ ..+.++..++|+++++|++++.+++++... .... +... .
T Consensus 256 ~~~~~~~~~~~P~~~~~~---~~p~-----------~~~~~~~~~~Pi~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~ 320 (392)
T 2de6_A 256 KIVANDISIWLPGVLKVN---PFPN-----------PDMMQFEWYVPIDENTHYYFQTLGKPCAND-EERKKYEQEFESK 320 (392)
T ss_dssp BCCCCEEEEETTTEEEEE---SCSS-----------TTCEEEEEEEEEETTEEEEEEEEEEECSSH-HHHHHHHHHHHHT
T ss_pred cccceeEEEecccceecc---ccCC-----------CCEEEEEEEeecCCCcEEEEEEEecCCCCH-HHHHHHHHHHHHH
Confidence 0111223344433211 0111 123456678999999999888777655321 1111 1111 0
Q ss_pred HHH-HHHHHHhhHHHHHHHHhhhccCCCC-cCCCCccCChHHHHHHHHHHHHHcCCCC
Q 009406 473 WRH-FAEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGAKQ 528 (535)
Q Consensus 473 ~~~-f~~~V~~ED~~IlE~qQ~~l~~g~~-~~~l~~~aD~~~v~yRrwl~~l~~g~~~ 528 (535)
+.. ....|+.||+.|+|+||+.+..+.. ..+++..+|+++++||||++++..+...
T Consensus 321 ~~~~~~~~~~~qD~~i~e~qq~~~~~~~~~~~e~~~~~D~~~~~~Rr~l~~~~~~~~~ 378 (392)
T 2de6_A 321 WKPMALEGFNNDDIWAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQGIQT 378 (392)
T ss_dssp HHHHTTTTTTHHHHHHHHHTHHHHHTSTHHHHCCCCGGGHHHHHHHHHHHHHCSCBCC
T ss_pred HHHhhccCCChhhHHHHHhhhhhhhccccCccceecchhHHHHHHHHHHHHHhhhhcC
Confidence 111 1134678999999999998876543 4467889999999999999998776543
No 5
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=1.1e-41 Score=366.02 Aligned_cols=309 Identities=17% Similarity=0.269 Sum_probs=211.5
Q ss_pred CChhhhH--HHhccCCCCcccccCCCCCccccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCC
Q 009406 184 TSKQSLD--IVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH 261 (535)
Q Consensus 184 ~s~~~~~--~~~~~~~~~s~~~~g~~~~~~~~~~~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpH 261 (535)
+|++.|+ .+++.+ |++.|++||++++|++|++++++++|++++|+| .+|+++|+.|+|||
T Consensus 25 ~~~~~~~~~~e~~~i-----------------f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r-~~G~v~a~~n~CpH 86 (446)
T 1z01_A 25 KTQSQYQPYKDAAWG-----------------FINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLH 86 (446)
T ss_dssp HHHGGGHHHHHCTTC-----------------BCSEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTT
T ss_pred cCHHHhhhhhhhhhh-----------------hhhceEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcCCC
Confidence 7888887 555543 578899999999999899999999999999999 79999999999999
Q ss_pred CCCCCCCCc--ccCCeeeccCCCeeEcC-CCCccccCCccc----ccccccccceEEecCcEEEcCCCCC----CCCCCC
Q 009406 262 RACPLHLGS--VNEGRIQCPYHGWEYST-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIP 330 (535)
Q Consensus 262 Rga~Ls~G~--v~~~~l~CPyHGW~Fd~-dG~c~~iP~~~~----~~~~L~~~pv~e~~G~IwV~l~~~~----p~~~lp 330 (535)
||++|+.|. ++++.|+||||||+||. +|+|+.+|+.+. ...+|++|||.+++|+||||++++. .+.+++
T Consensus 87 rga~L~~g~~~~~~~~i~CpyHgw~fd~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~l~ 166 (446)
T 1z01_A 87 RGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPPLA 166 (446)
T ss_dssp TCCCGGGSCCCSSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCCGG
T ss_pred CcCCCCCCccCCCCCEEEeCCCCeEEeCCCCCccccCCCccccCcccCCCcEEEEEEECCEEEEEeCCccccccCCCChh
Confidence 999999997 46789999999999996 999999986431 2578999999999999999997642 111222
Q ss_pred CCCC----------------------CCCceeeeEEEEEeecchhhHhhhcCCCCCCCCcCcccccc---CCCCCcee--
Q 009406 331 CLLP----------------------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK---GWSVPSLV-- 383 (535)
Q Consensus 331 ~~~~----------------------~~~~~~~~~~~~~~~~nwk~~~EN~lD~~H~~~vH~~t~~~---~~~vp~~v-- 383 (535)
+.++ ..++.+. ...++++||||+++||++|+||+ ++|+++++. ....+...
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~~~~~~~~~~~~~~~ 244 (446)
T 1z01_A 167 HDLPFRFPERSEQFPHPLWPSSPSVLDDNAVVH-GMHRTGFGNWRIACENGFDNAHI-LVHKDNTIVHAMDWVLPLGLLP 244 (446)
T ss_dssp GGSCCCTTTTTTTSCCTTSCCCCCTTSTTEEEE-EEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHHHHTTCCCCSEEEE
T ss_pred HhccchhhhhhhccccccccccccccCCCeEEE-eEEEEEcCCHHHHHHhccchhhh-hhhhhhhhcccccccccccccc
Confidence 1111 1244443 34568999999999999999999 999988752 11111100
Q ss_pred ------eeecCCCCCCcc------------cc--------C----CCceeEEcCceeEEEEeeecCCCCcCCCCcccccc
Q 009406 384 ------KFLTPASGLQGY------------WD--------P----YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCAT 433 (535)
Q Consensus 384 ------~~~~~~~~~~g~------------~~--------~----~~~~~~f~~P~~v~~~~g~~~pg~~~~~~~~~~~~ 433 (535)
.......+..+. +. . ....+.+..|++++... .|. .
T Consensus 245 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~P~~~~~~~---~p~-----------~ 310 (446)
T 1z01_A 245 TSDDCIAVVEDDDGPKGMMQWLFTDKWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVEN---WPE-----------E 310 (446)
T ss_dssp CSTTSEEEECCSSSCCEEEECTTSTTEEEECEETTTTEECCCCCCCCCEEEEETTTEEEEET---CSS-----------T
T ss_pred cCCCceeEEEecCCCCEEEEEecCccccchhhhhhhccccccCCceEEEeeeecCceEEEec---cCC-----------C
Confidence 001000000010 00 0 00123344565543321 110 1
Q ss_pred eeEEEEEEecCCCCeeEeeeeeeccchhhccCchhHHHHH----HHH-HHHHHhhHHHHHHHHhhhccCCCC-cCCCCcc
Q 009406 434 HLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLW----RHF-AEQVLNEDLRLVLGQQERMNNGAN-VWNLPVG 507 (535)
Q Consensus 434 ~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~~~~~p~~~~~~----~~f-~~~V~~ED~~IlE~qQ~~l~~g~~-~~~l~~~ 507 (535)
++.+++.++|+++++|++++.+++++... .....+...+ ... ...|..||..++|+||+++..+.. ..+++..
T Consensus 311 ~~~~~~~~~Pi~~~~t~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~ED~~i~e~~q~~~~~~~~~~~~~l~~ 389 (446)
T 1z01_A 311 HVVQYEWYVPITDDTHEYWEILVRVCPTD-EDRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYYDGTGWDDEQLVA 389 (446)
T ss_dssp TCEEEEEEEESSSSEEEEEEEEEEECCSH-HHHHHHHHHHHTTHHHHTTTTHHHHHHHHHHHHHHHHHTSHHHHHCCCCG
T ss_pred CeEEEEEEEECCCCcEEEEEEEecCCCCH-HHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHhccccccccccCch
Confidence 23456788999999999988777654311 0111001111 111 123679999999999999877543 3468889
Q ss_pred CChHHHHHHHHHHHHHcCCC
Q 009406 508 YDKLGVRYRLWRDALEKGAK 527 (535)
Q Consensus 508 aD~~~v~yRrwl~~l~~g~~ 527 (535)
+|+++++||||++++..+..
T Consensus 390 ~D~~i~~~Rr~l~~~~~~~~ 409 (446)
T 1z01_A 390 TDISPITWRKLASRWNRGIA 409 (446)
T ss_dssp GGHHHHHHHHHHHHHCSCBC
T ss_pred hhHHHHHHHHHHHHHHhhcc
Confidence 99999999999998865553
No 6
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=5.2e-42 Score=364.82 Aligned_cols=311 Identities=17% Similarity=0.165 Sum_probs=223.4
Q ss_pred ccccCCCCCChhhhHHHhccCCCCcccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEE
Q 009406 176 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 254 (535)
Q Consensus 176 ~~~~~~~~~s~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~W~~va~s~eL~-~g~~~~~~l~g~~vvv~R~~dG~i~A 254 (535)
..++....+|++.++.|++++| .+.|++||++++|+ +|++++++++|++++|+|+.+|+++|
T Consensus 19 ~~lp~~~Y~d~~~~~~E~~~if-----------------~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A 81 (412)
T 3vca_A 19 FSLEQPFYTSPEVYALDLQHIF-----------------YKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRA 81 (412)
T ss_dssp BCCCHHHHHCHHHHHHHHHHTT-----------------TTSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CcCCHHHcCCHHHHHHHHHHHH-----------------hccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEE
Confidence 3466677889999999998875 67888999999998 59999999999999999999999999
Q ss_pred EeecCCCCCCCCC-CCcccCCeeeccCCCeeEcCCCCccccCCcc----cccccccccceEEecCcEEEcCCCCCCCCCC
Q 009406 255 VQNTCAHRACPLH-LGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATI 329 (535)
Q Consensus 255 ~~n~CpHRga~Ls-~G~v~~~~l~CPyHGW~Fd~dG~c~~iP~~~----~~~~~L~~~pv~e~~G~IwV~l~~~~p~~~l 329 (535)
+.|+|||||++|+ .|.++++.|+||||||+||.||+|+.+|+.. ..+.+|++|||++++|+|||++++++| ++
T Consensus 82 ~~n~CpHrga~L~~~g~~~~~~i~CPyHgw~fdldG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p--~l 159 (412)
T 3vca_A 82 FHNSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPP--DF 159 (412)
T ss_dssp EESSCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CC
T ss_pred ecccCCCCCCEeecccccCCCEEEcCCCCCEEcCCCccccCCccccccCcccCCCcEEEEEEECCEEEEEecCCCC--CH
Confidence 9999999999998 6888999999999999999999999999753 235789999999999999999987654 34
Q ss_pred CCCCC----------CCCceeeeEEEEEeecchhhHhhhcCCCCCCCCcCccccccCCCC--------------------
Q 009406 330 PCLLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV-------------------- 379 (535)
Q Consensus 330 p~~~~----------~~~~~~~~~~~~~~~~nwk~~~EN~lD~~H~~~vH~~t~~~~~~v-------------------- 379 (535)
+++++ ...+.+.....++++||||+++||++|+||++++|+++++.-..-
T Consensus 160 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (412)
T 3vca_A 160 QTFAQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHF 239 (412)
T ss_dssp HHHHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHTTSCCCHHHHCC----CCCHHHHHHH
T ss_pred HHHhhhhHHhhccccCCCeEEeEEEEEEEccCchhhHhhccccccCcccCcchhhcccccccccccccccccccchhhhh
Confidence 44321 123444445677899999999999999999999999876521100
Q ss_pred --------Ccee------ee---ecCCC-C-----CCc---c------cc--CCCceeEEcCceeEEEEeeecCCCCcCC
Q 009406 380 --------PSLV------KF---LTPAS-G-----LQG---Y------WD--PYPIDMEFRPPCMVLSTIGISKPGKLEG 425 (535)
Q Consensus 380 --------p~~v------~~---~~~~~-~-----~~g---~------~~--~~~~~~~f~~P~~v~~~~g~~~pg~~~~ 425 (535)
+... .+ ..+.. + ..+ + +. .......+..|++++...
T Consensus 240 ~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~---------- 309 (412)
T 3vca_A 240 DRCEAAGTPAQFVLAGDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFL---------- 309 (412)
T ss_dssp HHHHHTTCCCSCEECTTSSEEEEEECCSTTCCSSSSSSSCSCSSCSSCCCSTTCCEEEEEETTTEEEEEC----------
T ss_pred hhhhccCCcccccccccCceeeeeecccccccccccCccccccccccCCcccCCceEEEEECCeEEEEEC----------
Confidence 0000 00 00000 0 000 0 00 001122345666655432
Q ss_pred CCcccccceeEEEEEEecCCCCeeEeeeeeeccchhhccCchhHHHHHHHHHHHHHhhHHHHHHHHhhhccCCCCc-CCC
Q 009406 426 QNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANV-WNL 504 (535)
Q Consensus 426 ~~~~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~~~~~p~~~~~~~~f~~~V~~ED~~IlE~qQ~~l~~g~~~-~~l 504 (535)
.+.+.++.+.|+++++|++.+.++.........-.++ ..+..+.+.|..||..|||.+|+|+.++... ..+
T Consensus 310 -------pd~~~~~~~~P~~~~~t~v~~~~~~~~d~~~~~d~~~-~~~~~~~~~~~~ED~~l~e~~Q~G~~S~~y~~G~~ 381 (412)
T 3vca_A 310 -------PDHSLTFRVMPISPTETEVTTTWLVHKDAVEGVDYDL-KRLTEVWIATNDEDREIVETNQQGILSPAYVPGPY 381 (412)
T ss_dssp -------SSCEEEEEEEEEETTEEEEEEEEEEETTCCBTTTBCH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCBC
T ss_pred -------CCEEEEEEEEECCCCeEEEEEEEEEccccccCccHHH-HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCC
Confidence 1234567789999999999988775321110000112 2344567889999999999999999987532 223
Q ss_pred CccCChHHHHHHHHHH-HHH
Q 009406 505 PVGYDKLGVRYRLWRD-ALE 523 (535)
Q Consensus 505 ~~~aD~~~v~yRrwl~-~l~ 523 (535)
+...+.++..|.+|+. ++.
T Consensus 382 sp~~E~~v~~F~~w~~~~l~ 401 (412)
T 3vca_A 382 SPGQESGVMQFVDWYAASLE 401 (412)
T ss_dssp CTTTCHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHH
Confidence 3335899999999955 443
No 7
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=5.1e-38 Score=329.23 Aligned_cols=302 Identities=19% Similarity=0.354 Sum_probs=213.0
Q ss_pred CccccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc--ccCCeeeccCCCeeEc
Q 009406 209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYS 286 (535)
Q Consensus 209 ~~~~~~~~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~--v~~~~l~CPyHGW~Fd 286 (535)
.....|++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||
T Consensus 23 E~e~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fd 101 (389)
T 3gkq_A 23 DAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYR 101 (389)
T ss_dssp HCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEEE
T ss_pred hhhhhhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEEE
Confidence 44567899999999999999999999999999999999 79999999999999999999986 5688999999999999
Q ss_pred C-CCCccccCCccc----ccccccccceEEecCcEEEcCCCCCCCCCCCCCCC----CCCceeeeEEEEEeecchhhHhh
Q 009406 287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----PSGFEIHAEIVMELPIEHGLLLD 357 (535)
Q Consensus 287 ~-dG~c~~iP~~~~----~~~~L~~~pv~e~~G~IwV~l~~~~p~~~lp~~~~----~~~~~~~~~~~~~~~~nwk~~~E 357 (535)
. ||+|+.+|+.+. ...+|++|||++++|+|||++++.++ +++++.++ ..++.+. ...++++||||.++|
T Consensus 102 l~dG~cv~iP~~P~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~l~~~~~~~~~~~~-~~~~~i~~NWK~~~E 179 (389)
T 3gkq_A 102 WDNGKLVDILTNPTSVQIGRHALKTYPVREEKGLVFLFVGDQEP-HDLAEDVPPGFLDADLAVH-GQHRVVDANWRMGVE 179 (389)
T ss_dssp TTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEE-EEEEEESSCHHHHHH
T ss_pred CCCCCeecccCCcccccccccCCcEEEEEEECCeEEEecCCCCC-CCchhhcchhccCCceEEE-eEEEEEecCchhhHH
Confidence 7 999999987542 35789999999999999999975432 23333221 2355543 346789999999999
Q ss_pred hcCCCCCCCCcCccccccC---CCCCc---------eeeeecCCCCCCccccCCC-------------------------
Q 009406 358 NLLDLAHAPFTHTSTFAKG---WSVPS---------LVKFLTPASGLQGYWDPYP------------------------- 400 (535)
Q Consensus 358 N~lD~~H~~~vH~~t~~~~---~~vp~---------~v~~~~~~~~~~g~~~~~~------------------------- 400 (535)
|++|+||+ ++|+++++.. ...+. ......+...++|.++.+.
T Consensus 180 N~lD~yH~-~vH~~si~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (389)
T 3gkq_A 180 NGFDAGHV-FIHKSSILLDGNDIALPLGFAPGDPEQLTRSVTGEGAPKGVFDLLGEHSVPIFEATIEGQPAIQGHMGSKM 258 (389)
T ss_dssp HHTCSGGG-GGGTTCHHHHHTTBCBCSEEEECCGGGSEEEECCTTSCCEEEECSGGGEEEESEEEETTEEEEECBCCSBC
T ss_pred hcchhchh-hCccccccccccccccccccccCCCcceEEEEcCCCCCccHHhhhhccccccccccccCcccccCCCCCcc
Confidence 99999999 9999987531 11111 1112222233444332211
Q ss_pred --ceeEEcCceeEEEEeeecCCCCcCCCCcccccceeEEEEEEecCCCCeeEeeeeeeccchhhccCchh---HHHHHHH
Q 009406 401 --IDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPF---MQYLWRH 475 (535)
Q Consensus 401 --~~~~f~~P~~v~~~~g~~~pg~~~~~~~~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~~~~~p~---~~~~~~~ 475 (535)
....+..|++.... .+.. .+++++-..+|+++++++++-.+............| +...|..
T Consensus 259 ~~~~~s~~lP~v~~v~-~~~~-------------~~~~~~~~~vpi~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (389)
T 3gkq_A 259 VAISISVWLPGVLKVD-PFPD-------------PTLTQFEWYVPIDEGHHLYLQMLGRRVGSEEEARSFEAEFREKWVE 324 (389)
T ss_dssp CCCEEEEETTTEEEEE-SCSS-------------TTCEEEEEEEEEETTEEEEEEEEEEECSSHHHHHHHHHHHHHTHHH
T ss_pred cceeEEEEecCeeEec-cCCC-------------CCeEEEEEEeeccCCeEEEEEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 12334444443322 1111 246677777999999999997776544322111111 1112221
Q ss_pred H-HHHHHhhHHHHHHHHhhhccCCC-CcCCCCccCChHHHHHHHHHHHHHcCCCC
Q 009406 476 F-AEQVLNEDLRLVLGQQERMNNGA-NVWNLPVGYDKLGVRYRLWRDALEKGAKQ 528 (535)
Q Consensus 476 f-~~~V~~ED~~IlE~qQ~~l~~g~-~~~~l~~~aD~~~v~yRrwl~~l~~g~~~ 528 (535)
. .+.+.+.|...-|++|+=...+. -..+.....|..++++||...+..+|.+.
T Consensus 325 ~~~~~f~~~d~~ar~~~~~~y~~~~g~~~e~l~~~d~~~~~wr~~~~~~~~~~~~ 379 (389)
T 3gkq_A 325 LALNGFNDDDILARRSMEPFYADDRGWREEVLFESDRAIIEWRRLASQYNRGIQT 379 (389)
T ss_dssp HTTTTTTHHHHHHHHHHHHHHHTSHHHHHCCCCGGGHHHHHHHHHHHHHCSCBCC
T ss_pred HhhccccchhHHHHHHHHHhhccCCCCChhhccCcchhHHHHHHHHHHhccccCC
Confidence 1 34567889999999998766532 12257788999999999999998888765
No 8
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=6.5e-38 Score=329.24 Aligned_cols=304 Identities=20% Similarity=0.312 Sum_probs=211.2
Q ss_pred CccccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc--ccCCeeeccCCCeeEc
Q 009406 209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYS 286 (535)
Q Consensus 209 ~~~~~~~~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~--v~~~~l~CPyHGW~Fd 286 (535)
.....|++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||
T Consensus 26 E~~~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fd 104 (394)
T 3gcf_A 26 EATLGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTR-AKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYD 104 (394)
T ss_dssp HCTTCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEEEE
T ss_pred hhhhhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcEEE
Confidence 34457899999999999999999999999999999999 79999999999999999999986 4678999999999999
Q ss_pred C-CCCccccCCccc----ccccccccceEEecCcEEEcCCCCCCCCCCCCCCC----CCCceeeeEEEEEeecchhhHhh
Q 009406 287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----PSGFEIHAEIVMELPIEHGLLLD 357 (535)
Q Consensus 287 ~-dG~c~~iP~~~~----~~~~L~~~pv~e~~G~IwV~l~~~~p~~~lp~~~~----~~~~~~~~~~~~~~~~nwk~~~E 357 (535)
. +|+|+.+|+.+. ...+|++|||++++|+|||++++.++ +++++.++ ..++... ....+++||||.++|
T Consensus 105 l~dG~cv~iP~~p~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~L~~~~~d~~~~~~-~~~~~i~~NWK~~~E 182 (394)
T 3gcf_A 105 LDDGRLVDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEP-HALSEDLPPGFLDEDTHLL-GIRRTVQSNWRLGVE 182 (394)
T ss_dssp TTTCBEEEETTSTTCTTTTSCBCCEECEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEE-EEEEEESSCHHHHHH
T ss_pred CCCCceeccCCCcccccccccCceEEEEEEECCcEEEecCCCCC-CCchhhcchhhcCCceEEE-eEEEEEecCchhhHh
Confidence 7 899999987542 35789999999999999999975432 23333221 2345443 346789999999999
Q ss_pred hcCCCCCCCCcCccccccC---CCCCceee--------eecCCCCCCccccCC---------------------------
Q 009406 358 NLLDLAHAPFTHTSTFAKG---WSVPSLVK--------FLTPASGLQGYWDPY--------------------------- 399 (535)
Q Consensus 358 N~lD~~H~~~vH~~t~~~~---~~vp~~v~--------~~~~~~~~~g~~~~~--------------------------- 399 (535)
|++|+||+ |+|+++++.. ...+..+. .. +....+|.++.+
T Consensus 183 N~lD~yH~-~vH~~ti~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kg~~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~ 260 (394)
T 3gcf_A 183 NGFDTTHI-FMHRNSPWVSGNRLAFPYGFVPADRDAMQVY-DENWPKGVLDRLSENYMPVFEATLDGETVLSAELTGEEK 260 (394)
T ss_dssp HHSCSSGG-GGGTTCHHHHHTTBCCCSEEEECSTTSEEEE-CSSSSCEEEECHHHHEEEECEEEETTEEEEECCCCSSCB
T ss_pred hccccchh-hCchhhhcccccccccCcceeEcCCceEEec-cCCCCcchhhhhhccccccccccccccccccccccCccc
Confidence 99999999 9999988641 11111110 11 112222321110
Q ss_pred --CceeEEcCceeEEEEeeecCCCCcCCCCcccccceeEEEEEEecCCCCeeEeeeeeeccchhhccCchh---HHHHHH
Q 009406 400 --PIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPF---MQYLWR 474 (535)
Q Consensus 400 --~~~~~f~~P~~v~~~~g~~~pg~~~~~~~~~~~~~l~~~~~~tPvs~~~Tr~~~~~~~~f~~~~~~~p~---~~~~~~ 474 (535)
+....+..|++.... .+.. .+++++-..+|+++++++++-.+............| +...|.
T Consensus 261 ~~~~~~s~~lP~v~~v~-~~p~-------------~~~~~~~~~vPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (394)
T 3gcf_A 261 KVAAQVSVWLPGVLKVD-PFPD-------------PTLIQYEFYVPISETQHEYFQVLQRKVEGPEDVKTFEVEFEERWR 326 (394)
T ss_dssp CCCSEEEEETTTEEEEE-SCSS-------------TTCEEEEEEEESSSSCEEEEEEEEEECSSHHHHHHHHHHHHHTHH
T ss_pred ccceeEEEEecCeeEec-cCCC-------------CCeEEEEEEeeccCCeEEEEEEEEEECCCHHHHHHHHHHHHHHhH
Confidence 112333344433222 1111 246667777999999999997666543322111111 111222
Q ss_pred HH-HHHHHhhHHHHHHHHhhhccCCC-CcCCCCccCChHHHHHHHHHHHHHcCCCCCCC
Q 009406 475 HF-AEQVLNEDLRLVLGQQERMNNGA-NVWNLPVGYDKLGVRYRLWRDALEKGAKQLPF 531 (535)
Q Consensus 475 ~f-~~~V~~ED~~IlE~qQ~~l~~g~-~~~~l~~~aD~~~v~yRrwl~~l~~g~~~~p~ 531 (535)
.. .+.+.+.|...-|++|+=...+. -..+.....|..++++||...+..+|.++-|-
T Consensus 327 ~~~~~~f~~~d~~ar~~~~~~y~~~~g~~~e~l~~~d~~~~~~r~~~~~~~~~~~~~~~ 385 (394)
T 3gcf_A 327 DDALHGFNDDDVWAREAQQEFYGERDGWSKEQLFPPDMCIVKWRTLASERGRGVRAARV 385 (394)
T ss_dssp HHTTTTTTHHHHHHHHHHHHHHHHSCHHHHCCCCGGGHHHHHHHHHHHHHCSEECC---
T ss_pred HHhhcccchhhHHHHHHHHHhhcccCCCChhhccCcchhHHHHHHHHHHhcccCCCCCc
Confidence 11 34567889999999988665432 12257788999999999999999988877653
No 9
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=6e-36 Score=321.95 Aligned_cols=180 Identities=18% Similarity=0.302 Sum_probs=152.5
Q ss_pred ccccCCCCCChhhhHHHhccCCCCcccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEE
Q 009406 176 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 254 (535)
Q Consensus 176 ~~~~~~~~~s~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~W~~va~s~eL~-~g~~~~~~l~g~~vvv~R~~dG~i~A 254 (535)
..++.+..+|++.++.|++++| .+.|++||++++|+ +|+++++.++|.+|+|+|+.+|+++|
T Consensus 13 ~~~~~~~y~~~~~~~~E~~~if-----------------~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a 75 (454)
T 2gbw_A 13 ASQSRQVFWDEDVYALEIERIF-----------------SRAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRA 75 (454)
T ss_dssp TEEEGGGGTCHHHHHHHHHHTT-----------------TTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CccCHHHcCCHHHHHHHHHHHh-----------------hcCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEE
Confidence 4577888999999999998875 56788999999998 69999999999999999999999999
Q ss_pred EeecCCCCCCCCCCCcc-cCCeeeccCCCeeEcCCCCccccCCccc--------ccccccccceEEecCcEEEcCCCCCC
Q 009406 255 VQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (535)
Q Consensus 255 ~~n~CpHRga~Ls~G~v-~~~~l~CPyHGW~Fd~dG~c~~iP~~~~--------~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (535)
+.|+|||||++|+.|.. +++.|+||||||+||.||+|+.+|+... ...+|++|+|++++|+|||++++++|
T Consensus 76 ~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p 155 (454)
T 2gbw_A 76 FINSCSHRGNQICHADSGNAKAFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAP 155 (454)
T ss_dssp EESSCTTTCCCSCCCSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCC
T ss_pred EeccCCCCCCCCcccccCCcCEEEeCCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCC
Confidence 99999999999999875 6789999999999999999999997531 24689999999999999999987654
Q ss_pred CCCCCCCCC-------------CCCceee-eEEEEEeecchhhHhhhc-CCCCCCCCcCccccc
Q 009406 326 TATIPCLLP-------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFA 374 (535)
Q Consensus 326 ~~~lp~~~~-------------~~~~~~~-~~~~~~~~~nwk~~~EN~-lD~~H~~~vH~~t~~ 374 (535)
+++++++ +.++++. ....++++||||+++||+ +|+||++++|..+++
T Consensus 156 --~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~ 217 (454)
T 2gbw_A 156 --SLEDYLGEFRYYLDTIWEGAGGGMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALS 217 (454)
T ss_dssp --CHHHHHGGGHHHHHHHHTTTTTCEEEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred --CHHHHhhhhHHHHHHHHhcCCCceEEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHHh
Confidence 3444321 1345544 255678999999999999 799999999976654
No 10
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=2.5e-36 Score=324.24 Aligned_cols=180 Identities=19% Similarity=0.291 Sum_probs=152.3
Q ss_pred ccc-CCCCCChhhhHHHhccCCCCcccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEE
Q 009406 177 QTC-ASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 254 (535)
Q Consensus 177 ~~~-~~~~~s~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~W~~va~s~eL~-~g~~~~~~l~g~~vvv~R~~dG~i~A 254 (535)
.++ ....+|++.++.|++++| .+.|++||+++||+ +|++++++++|++|+|+|+.+|+++|
T Consensus 12 ~~~~~~~y~~~~~~~~E~~~if-----------------~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a 74 (447)
T 2bmo_A 12 LTQKLLIHGDKELFQHELKTIF-----------------ARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRA 74 (447)
T ss_dssp CEEEGGGGTCHHHHHHHHHHTT-----------------TTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CCCccceeCCHHHHHHHHHHhh-----------------ccCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCCCCEEE
Confidence 456 778899999999998875 56789999999998 69999999999999999999999999
Q ss_pred EeecCCCCCCCCCCCcc-cCCeeeccCCCeeEcCCCCccccCCcc--------cccccccccc-eEEecCcEEEcCCCCC
Q 009406 255 VQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLP-CFEQEGMIWIWPGDEP 324 (535)
Q Consensus 255 ~~n~CpHRga~Ls~G~v-~~~~l~CPyHGW~Fd~dG~c~~iP~~~--------~~~~~L~~~p-v~e~~G~IwV~l~~~~ 324 (535)
+.|+|||||++|+.|.+ +++.|+||||||+||.||+|+.+|+.. ....+|++|| |++++|+|||++++++
T Consensus 75 ~~n~CpHrga~L~~g~~g~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~ 154 (447)
T 2bmo_A 75 FLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEA 154 (447)
T ss_dssp EESBCTTTCCBCCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTC
T ss_pred EeccCcCCCCCccccccCCcCeEECCCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCC
Confidence 99999999999999875 578999999999999999999999753 1246899999 9999999999998765
Q ss_pred CCCCCCCCCC------------CCCceee-eEEEEEeecchhhHhhhc-CCCCCCCCcCcccccc
Q 009406 325 PTATIPCLLP------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFAK 375 (535)
Q Consensus 325 p~~~lp~~~~------------~~~~~~~-~~~~~~~~~nwk~~~EN~-lD~~H~~~vH~~t~~~ 375 (535)
| +++++++ +.++.+. ....++++||||+++||+ +|+||++++|..+++.
T Consensus 155 ~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l~~ 217 (447)
T 2bmo_A 155 P--PLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRA 217 (447)
T ss_dssp C--CHHHHHTTHHHHHHHHHTTTSCEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHHH
T ss_pred C--CHHHHhccHHHHHHHHhccCCCeEEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhhhc
Confidence 4 3443322 2245544 245678999999999999 7999999999876653
No 11
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=1.1e-35 Score=321.23 Aligned_cols=181 Identities=19% Similarity=0.333 Sum_probs=150.9
Q ss_pred cccccCCCCCChhhhHHHhccCCCCcccccCCCCCccccccCceEEeeecCCCCC-CCeEEEEECCeeEEEEEcCCCcEE
Q 009406 175 TDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPG 253 (535)
Q Consensus 175 ~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~W~~va~s~eL~~-g~~~~~~l~g~~vvv~R~~dG~i~ 253 (535)
+..++....+|++.++.|++++| .+.|++||++++|++ |++++++++|++|+|+|+.+|+++
T Consensus 20 ~~~lp~~~Ytd~~~~~~E~~~if-----------------~~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~G~v~ 82 (470)
T 2b1x_A 20 DWTVPAAIINDPEVHDVERERIF-----------------GHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIR 82 (470)
T ss_dssp TCEEEGGGSSCHHHHHHHHHHTT-----------------TTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEE
T ss_pred CCcCCHHHcCCHHHHHHHHHHHh-----------------hcCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCCCCEE
Confidence 44677888999999999998865 577889999999985 889999999999999999999999
Q ss_pred EEeecCCCCCCCCCCCccc-CCeeeccCCCeeEcCCCCccccCCccc--------ccccccccc-eEEecCcEEEcCCCC
Q 009406 254 CVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLP-CFEQEGMIWIWPGDE 323 (535)
Q Consensus 254 A~~n~CpHRga~Ls~G~v~-~~~l~CPyHGW~Fd~dG~c~~iP~~~~--------~~~~L~~~p-v~e~~G~IwV~l~~~ 323 (535)
||.|+|||||++|+.|.+. ++.|+||||||+||.||+|+.+|+.+. ...+|.++| +++++|+|||+++++
T Consensus 83 a~~n~C~Hrga~L~~g~~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~ 162 (470)
T 2b1x_A 83 GHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPH 162 (470)
T ss_dssp EEESSCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTT
T ss_pred EEecccCCCCCEeeccCcCCCCEEEECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCC
Confidence 9999999999999998765 479999999999999999999998531 246788885 555799999999876
Q ss_pred CCCCCCCCCCC-------------CCCceeee-EEEEEeecchhhHhhhc-CCCCCCCCcCccccc
Q 009406 324 PPTATIPCLLP-------------PSGFEIHA-EIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFA 374 (535)
Q Consensus 324 ~p~~~lp~~~~-------------~~~~~~~~-~~~~~~~~nwk~~~EN~-lD~~H~~~vH~~t~~ 374 (535)
+| +++++++ ..++++.. ...++++||||+++||+ +|+||++++|++++.
T Consensus 163 ~~--~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~ 226 (470)
T 2b1x_A 163 AD--SLEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVE 226 (470)
T ss_dssp CC--CHHHHHGGGHHHHHHHHCSSSSCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHH
T ss_pred CC--CHHHHhcchhHHHHHHhccCCCCeEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhh
Confidence 54 3443322 23454443 45678999999999999 999999999998764
No 12
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=3.8e-35 Score=315.58 Aligned_cols=182 Identities=18% Similarity=0.271 Sum_probs=155.2
Q ss_pred cccccCCCCCChhhhHHHhccCCCCcccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEE
Q 009406 175 TDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPG 253 (535)
Q Consensus 175 ~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~W~~va~s~eL~-~g~~~~~~l~g~~vvv~R~~dG~i~ 253 (535)
+..++....+|++.++.|++++| .+.|++||++++|+ +|++++++++|++|+|+|+.+|+++
T Consensus 32 ~~~~~~~~Ytd~~~~~~E~~~if-----------------~~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~dG~v~ 94 (457)
T 3gzx_A 32 NGKLDARIYADQDLYQLELERVF-----------------GRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIK 94 (457)
T ss_dssp TTEEEGGGGTCHHHHHHHHHHTT-----------------TTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEE
T ss_pred CCcCCHHHcCCHHHHHHHHHHHH-----------------hcCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCCCeEE
Confidence 34677888999999999999975 67888999999997 6999999999999999999999999
Q ss_pred EEeecCCCCCCCCCCCc-ccCCeeeccCCCeeEcCCCCccccCCcc--------------cccccccccceEEecCcEEE
Q 009406 254 CVQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ--------------LRNVKIKSLPCFEQEGMIWI 318 (535)
Q Consensus 254 A~~n~CpHRga~Ls~G~-v~~~~l~CPyHGW~Fd~dG~c~~iP~~~--------------~~~~~L~~~pv~e~~G~IwV 318 (535)
||.|+|||||++|+.|. ++++.|+||||||+||.+|+|+.+|+.+ ....+|++|+|.+++|+|||
T Consensus 95 A~~n~C~Hrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv 174 (457)
T 3gzx_A 95 VFLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFA 174 (457)
T ss_dssp EEESCCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEE
T ss_pred EEeCcCCCCCcCccCCCCCcCCEEEcCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEE
Confidence 99999999999999986 6788999999999999999999999853 12367999999999999999
Q ss_pred cCCCCCCCCCCCCCCCC-------------CCceee-eEEEEEeecchhhHhhhc-CCCCCCC-CcCcccccc
Q 009406 319 WPGDEPPTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAP-FTHTSTFAK 375 (535)
Q Consensus 319 ~l~~~~p~~~lp~~~~~-------------~~~~~~-~~~~~~~~~nwk~~~EN~-lD~~H~~-~vH~~t~~~ 375 (535)
|+++++| ++++++++ .++++. ....++++||||+++||+ +|+||++ ++|.++++.
T Consensus 175 ~~~~~ap--~l~e~lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~~ 245 (457)
T 3gzx_A 175 NWDPEAP--DLKTYLSDAMPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVLA 245 (457)
T ss_dssp ESCTTSC--CHHHHTTTCHHHHHHHHSSSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHHH
T ss_pred ecCCCCC--ChHHHHhhhHHHHHHHhccCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhhhc
Confidence 9987654 34454331 234444 245678999999999999 8999999 999987653
No 13
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=100.00 E-value=3.2e-34 Score=309.09 Aligned_cols=179 Identities=19% Similarity=0.294 Sum_probs=149.5
Q ss_pred ccccCCCCCChhhhHHHhccCCCCcccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEE
Q 009406 176 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 254 (535)
Q Consensus 176 ~~~~~~~~~s~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~W~~va~s~eL~-~g~~~~~~l~g~~vvv~R~~dG~i~A 254 (535)
..++....+|++.++.|++++| .+.|++||+++||+ +|+++++.++|++|+|+|+.+|+++|
T Consensus 31 ~~~p~~~y~d~~~~~~E~~~if-----------------~~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~G~v~a 93 (460)
T 1uli_A 31 GRLDPRIYTDEALYEQELERIF-----------------GRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRV 93 (460)
T ss_dssp TEECGGGGTCHHHHHHHHHHTT-----------------TTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CcCCHHHcCCHHHHHHHHHHhh-----------------hcCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEE
Confidence 4567778899999999998865 57788999999998 58899999999999999999999999
Q ss_pred EeecCCCCCCCCCCCcc-cCCeeeccCCCeeEcCCCCccccCCccc-------ccccccccceEEecCcEEEcCCCCCCC
Q 009406 255 VQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPPT 326 (535)
Q Consensus 255 ~~n~CpHRga~Ls~G~v-~~~~l~CPyHGW~Fd~dG~c~~iP~~~~-------~~~~L~~~pv~e~~G~IwV~l~~~~p~ 326 (535)
|.|+|||||++|+.|.. +++.|+||||||+||.||+|+.+|+... ...+|++|+|++++|+|||++++++|
T Consensus 94 ~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p- 172 (460)
T 1uli_A 94 FLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAP- 172 (460)
T ss_dssp EESCCTTTCCCSCCSSEEECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCTTSC-
T ss_pred EeeeCCCCCCCCccccCCCCCEEEcCCCCCEEeCCCCEeeCCccccccCCCCHhHcCCceeeEEEECCEEEEEeCCCCC-
Confidence 99999999999998865 5689999999999999999999997531 23679999999999999999987653
Q ss_pred CCCCCCCC-------------CCCcee-eeEEEEEeecchhhHhhhc-CCCCCC-CCcCcccc
Q 009406 327 ATIPCLLP-------------PSGFEI-HAEIVMELPIEHGLLLDNL-LDLAHA-PFTHTSTF 373 (535)
Q Consensus 327 ~~lp~~~~-------------~~~~~~-~~~~~~~~~~nwk~~~EN~-lD~~H~-~~vH~~t~ 373 (535)
+++++++ +.++.+ .....++++||||+++||+ +|+||+ .++|..++
T Consensus 173 -~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~~ 234 (460)
T 1uli_A 173 -DLDTYLGEAKFYMDHMLDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGI 234 (460)
T ss_dssp -CHHHHHTTHHHHHHHHHCSSTTCEEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred -CHHHHhcchHHHHHHHhhcCCCceEEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence 3333322 123333 2345678999999999999 799999 69998665
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.93 E-value=2.4e-26 Score=198.73 Aligned_cols=101 Identities=19% Similarity=0.315 Sum_probs=95.0
Q ss_pred CceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCcccc
Q 009406 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 294 (535)
Q Consensus 216 ~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~-dG~c~~i 294 (535)
..|++|+.++||++|+++.+++.|++++|+| .+|+++|+.|+|||+|++|+.|.+.++.|+||||||+||. ||+|+.+
T Consensus 2 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~ 80 (103)
T 2qpz_A 2 VKWIEAVALSDILEGDVLGVTVEGKELALYE-VEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCA 80 (103)
T ss_dssp CCEEEEEETTSCCTTCEEEEEETTEEEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEET
T ss_pred CccEEEEEHHHcCCCCEEEEEECCEEEEEEE-ECCEEEEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeCC
Confidence 3699999999999999999999999999999 7999999999999999999999988899999999999996 9999999
Q ss_pred CCcccccccccccceEEecCcEEEcCC
Q 009406 295 PSTQLRNVKIKSLPCFEQEGMIWIWPG 321 (535)
Q Consensus 295 P~~~~~~~~L~~~pv~e~~G~IwV~l~ 321 (535)
|+. ..|++||+++++|.|||+++
T Consensus 81 P~~----~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 81 PVT----QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp TCC----SCCCEECEEEETTEEEEECC
T ss_pred CCC----CCCCEEeEEEECCEEEEEcC
Confidence 874 47999999999999999873
No 15
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.93 E-value=5.3e-26 Score=199.65 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=96.2
Q ss_pred CceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCC-cccCCeeeccCCCeeEcC-CCCccc
Q 009406 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG-SVNEGRIQCPYHGWEYST-DGKCEK 293 (535)
Q Consensus 216 ~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G-~v~~~~l~CPyHGW~Fd~-dG~c~~ 293 (535)
..|++|+.++||++|+++.+++.|++++|+|. +|+++|+.|+|||+|++|+.| .++++.|+||||||+||. ||+|+.
T Consensus 4 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~~ 82 (112)
T 1fqt_A 4 MKFTRVCDRRDVPEGEALKVESGGTSVAIFNV-DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKS 82 (112)
T ss_dssp CCCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEE
T ss_pred cceEEeEeHHHCCCCCeEEEEECCEEEEEEEE-CCEEEEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEeC
Confidence 35999999999999999999999999999998 999999999999999999999 888899999999999997 899999
Q ss_pred cCCcccccccccccceEEecCcEEEcCCCC
Q 009406 294 MPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (535)
Q Consensus 294 iP~~~~~~~~L~~~pv~e~~G~IwV~l~~~ 323 (535)
+|+. ..|++||+++++|+|||++++.
T Consensus 83 ~P~~----~~L~~~~v~~~~g~v~v~~~~~ 108 (112)
T 1fqt_A 83 PPPC----EALKIFPIRIEDNDVLVDFEAG 108 (112)
T ss_dssp SSCC----SCCCBCCEEEETTEEEECTTCC
T ss_pred CCCC----CCccEEEEEEECCEEEEEeccc
Confidence 9873 5799999999999999998654
No 16
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.93 E-value=3.3e-26 Score=200.57 Aligned_cols=104 Identities=19% Similarity=0.292 Sum_probs=96.2
Q ss_pred ceEEeeecCCCCCCCeEEEEE-CCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCcccc
Q 009406 217 FWFPVAFSTDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 294 (535)
Q Consensus 217 ~W~~va~s~eL~~g~~~~~~l-~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~-dG~c~~i 294 (535)
.|++|+.++||++|+++.+++ .|++++|+|..+|+++|+.|+|||+|++|+.|.++++.|+||||||+||. +|+|+.
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~- 79 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN- 79 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC-
Confidence 599999999999999999999 99999999988999999999999999999999988899999999999997 599998
Q ss_pred CCcccccccccccceEEecCcEEEcCCCCCC
Q 009406 295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (535)
Q Consensus 295 P~~~~~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (535)
|. ...|++|++++++|+|||++++.+|
T Consensus 80 p~----~~~L~~~~v~~~~g~v~v~~~~~~~ 106 (111)
T 1vm9_A 80 PD----DAALAEYPVEVKGDDIYVSTKGILP 106 (111)
T ss_dssp SS----SCBCCEECEEEETTEEEECCTTCCC
T ss_pred CC----cCCcCEEEEEEECCEEEEeccCcCC
Confidence 65 3579999999999999999976543
No 17
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.93 E-value=1.6e-26 Score=201.53 Aligned_cols=102 Identities=24% Similarity=0.380 Sum_probs=94.9
Q ss_pred ceEEeeecCCCCCCCeEEEEECCee-EEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCcccc
Q 009406 217 FWFPVAFSTDLKDDTMVPFDCFEEP-WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 294 (535)
Q Consensus 217 ~W~~va~s~eL~~g~~~~~~l~g~~-vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~-dG~c~~i 294 (535)
.|++|+.++||++|+++.+++.|++ ++|+|. +|+++|+.|+|||+|++|+.|.++++.|+||||||+||. ||+|+.+
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~ 81 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV-DGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAF 81 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCST
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE-CCEEEEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeCC
Confidence 5999999999999999999999999 999998 999999999999999999999988899999999999995 9999999
Q ss_pred CCcccccccccccceEEecCcEEEcCCCC
Q 009406 295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (535)
Q Consensus 295 P~~~~~~~~L~~~pv~e~~G~IwV~l~~~ 323 (535)
|+. ..|++||+++++|.|||+++++
T Consensus 82 P~~----~~L~~~~v~~~~g~v~v~~~~~ 106 (108)
T 2i7f_A 82 PCQ----IPIKTYPVTIEDGWVCIDQPKE 106 (108)
T ss_dssp TCC----SCCCEECEEEETTEEEEECC--
T ss_pred CCC----CCccEEeEEEECCEEEEeCCCC
Confidence 874 4799999999999999998654
No 18
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.93 E-value=2.4e-26 Score=203.17 Aligned_cols=104 Identities=21% Similarity=0.463 Sum_probs=96.2
Q ss_pred cCceEEeeecCCCCCCCeEEEEECCe-eEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCcc
Q 009406 215 KNFWFPVAFSTDLKDDTMVPFDCFEE-PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCE 292 (535)
Q Consensus 215 ~~~W~~va~s~eL~~g~~~~~~l~g~-~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~-dG~c~ 292 (535)
.+.|++||.++||++|+++.+++.|+ +++|+|. +|+++|+.|+|||+|++|+.|.+.++.|+||||||+||. ||+|+
T Consensus 2 ~~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~ 80 (115)
T 2de6_D 2 NQIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV-GDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPA 80 (115)
T ss_dssp --CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE-TTEEEEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEE
T ss_pred CcceEEeEEHHHCCCCCeEEEEECCccEEEEEEE-CCEEEEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEe
Confidence 36799999999999999999999999 9999998 999999999999999999999988899999999999995 99999
Q ss_pred ccCCcccccccccccceEEecCcEEEcCCCC
Q 009406 293 KMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (535)
Q Consensus 293 ~iP~~~~~~~~L~~~pv~e~~G~IwV~l~~~ 323 (535)
.+|+. ..|++||+++++|.|||++++.
T Consensus 81 ~~P~~----~~L~~~~v~~~~g~V~v~~~~~ 107 (115)
T 2de6_D 81 SSPCT----VPLGVFEVEVKEGEVYVAGEKK 107 (115)
T ss_dssp ETTCC----SCCCEEEEEESSSEEEEEEEEC
T ss_pred CCCCc----CCCCEEEEEEECCEEEEecCCc
Confidence 99974 5799999999999999998653
No 19
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.93 E-value=3.3e-26 Score=198.92 Aligned_cols=101 Identities=23% Similarity=0.347 Sum_probs=95.2
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEc-CCCCccccC
Q 009406 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMP 295 (535)
Q Consensus 217 ~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd-~dG~c~~iP 295 (535)
+|++||.++||++|+++.+++.|.+++|+| .+|+++|+.|+|||+|++|+.|.++++.|+||||||+|| .||+|+.+|
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P 79 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCN-VDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALP 79 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETT
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEE-ECCEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence 599999999999999999999999999999 599999999999999999999999899999999999999 599999999
Q ss_pred CcccccccccccceEEecCcEEEcCCC
Q 009406 296 STQLRNVKIKSLPCFEQEGMIWIWPGD 322 (535)
Q Consensus 296 ~~~~~~~~L~~~pv~e~~G~IwV~l~~ 322 (535)
+. ..|++||+++++|.|||++++
T Consensus 80 ~~----~~L~~~~v~~~~g~v~v~~~~ 102 (106)
T 3dqy_A 80 AC----KPIKVFPIKVEGDEVHVDLDN 102 (106)
T ss_dssp CC----SCCCEECEEEETTEEEECGGG
T ss_pred CC----CCccEEEEEEECCEEEEEccc
Confidence 73 579999999999999999854
No 20
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.92 E-value=2.4e-25 Score=198.55 Aligned_cols=102 Identities=20% Similarity=0.317 Sum_probs=94.9
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCC--cccCCeeeccCCCeeEc-CCCCccc
Q 009406 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYS-TDGKCEK 293 (535)
Q Consensus 217 ~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G--~v~~~~l~CPyHGW~Fd-~dG~c~~ 293 (535)
.|++||.++||++|+++.+++.|++++|+|. +|+++|+.|+|||+|++|+.| .++++.|+||||||+|| .+|+|+.
T Consensus 10 ~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~g~~~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~~ 88 (121)
T 3gce_A 10 TPVRVATLDQLKPGVPTAFDVDGDEVMVVRD-GDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTA 88 (121)
T ss_dssp CCEEEEEGGGSCTTCCEEEEETTEEEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEEE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEeC
Confidence 5999999999999999999999999999996 999999999999999999999 88889999999999999 5999999
Q ss_pred cCCcccccccccccceEEecCcEEEcCCCC
Q 009406 294 MPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (535)
Q Consensus 294 iP~~~~~~~~L~~~pv~e~~G~IwV~l~~~ 323 (535)
+|+. ..|++||+++++|.|||+++..
T Consensus 89 ~P~~----~~L~~~~v~v~~g~V~v~~~~~ 114 (121)
T 3gce_A 89 LPCV----LPVRAYDVVVDGTEILVAPKEA 114 (121)
T ss_dssp TTCC----SCCCBCCEEEETTEEEECCC--
T ss_pred CCCc----CCcceEEEEEECCEEEEEECcc
Confidence 9974 4799999999999999998654
No 21
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.92 E-value=2e-25 Score=196.15 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=92.6
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCC-cEEEEeecCCCCCC-CCCCCccc---CC-eeeccCCCeeEcC-CC
Q 009406 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---EG-RIQCPYHGWEYST-DG 289 (535)
Q Consensus 217 ~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG-~i~A~~n~CpHRga-~Ls~G~v~---~~-~l~CPyHGW~Fd~-dG 289 (535)
.|++|+.++||++|+++.+++.|++++|||..+| +++|+.|+|||+|+ +|+.|.+. ++ .|+||||||+||. ||
T Consensus 6 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~tG 85 (113)
T 2jo6_A 6 QWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDG 85 (113)
T ss_dssp CCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTT
T ss_pred hheEEeeHHHCCCCCeEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCCc
Confidence 5999999999999999999999999999998899 69999999999999 79999875 23 8999999999997 99
Q ss_pred CccccCCcccccccccccceEEecCcEEEcCC
Q 009406 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 321 (535)
Q Consensus 290 ~c~~iP~~~~~~~~L~~~pv~e~~G~IwV~l~ 321 (535)
+|+.+|+ ..|++||+++++|+|||+++
T Consensus 86 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~ 112 (113)
T 2jo6_A 86 LCMEDEQ-----FSVKHYEARVKDGVVQLRGG 112 (113)
T ss_dssp EETTTTT-----TCCCEEEEEEETTEEEEECC
T ss_pred cCCCCCc-----ccccEEeEEEECCEEEEEcC
Confidence 9999986 57999999999999999874
No 22
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.92 E-value=1.4e-25 Score=199.42 Aligned_cols=103 Identities=14% Similarity=0.016 Sum_probs=95.4
Q ss_pred CceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCC-CCCCCcccCC----eeeccCCCeeEcC-CC
Q 009406 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC-PLHLGSVNEG----RIQCPYHGWEYST-DG 289 (535)
Q Consensus 216 ~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga-~Ls~G~v~~~----~l~CPyHGW~Fd~-dG 289 (535)
..|++||.++||++|+++.+++.|++++|+|+.+|+++|+.|+|||+|+ +|+.|.+.++ .|+||||||+||. ||
T Consensus 4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 83 (119)
T 3c0d_A 4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSG 83 (119)
T ss_dssp CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTC
T ss_pred CccEEEEEHHHCCCCCeEEEEECCeEEEEEEecCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCCC
Confidence 5799999999999999999999999999999889999999999999999 8999987543 8999999999997 99
Q ss_pred CccccCCcccccccccccceEEecCcEEEcCCCC
Q 009406 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (535)
Q Consensus 290 ~c~~iP~~~~~~~~L~~~pv~e~~G~IwV~l~~~ 323 (535)
+|+.+|+ ..|++|||++++|.|||++++.
T Consensus 84 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~~~ 112 (119)
T 3c0d_A 84 QCLEDEA-----HCLKTWRVTVDDNQVCYLAKEL 112 (119)
T ss_dssp BBSSCTT-----CBCCEECEEESSSEEEEECCCC
T ss_pred cCCCCCC-----ceeeEEEEEEECCEEEEEeCCc
Confidence 9999986 4799999999999999998654
No 23
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.92 E-value=6.8e-25 Score=198.02 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=94.4
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCC-cEEEEeecCCCCCC-CCCCCccc---C-CeeeccCCCeeEcC-CC
Q 009406 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---E-GRIQCPYHGWEYST-DG 289 (535)
Q Consensus 217 ~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG-~i~A~~n~CpHRga-~Ls~G~v~---~-~~l~CPyHGW~Fd~-dG 289 (535)
.|++||.++||++|+++.+++.|++++|+|+.+| +++|+.|+|||||+ +|+.|.+. + ..|+||||||+||. ||
T Consensus 3 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 82 (130)
T 2jza_A 3 QWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDG 82 (130)
T ss_dssp SEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTC
T ss_pred ceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCCc
Confidence 5999999999999999999999999999998788 99999999999999 59999875 3 28999999999997 99
Q ss_pred CccccCCcccccccccccceEEecCcEEEcCCCCC
Q 009406 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEP 324 (535)
Q Consensus 290 ~c~~iP~~~~~~~~L~~~pv~e~~G~IwV~l~~~~ 324 (535)
+|+.+|+ ..|++|||++++|+|||++++.+
T Consensus 83 ~~~~~P~-----~~L~~~~v~v~~g~V~V~~~~~~ 112 (130)
T 2jza_A 83 FCLEDGA-----YSVAAYDTQVTNGNVQISIADSD 112 (130)
T ss_dssp CBSSCCS-----SCCBCCCEEESSSEEEEECCCCC
T ss_pred CCCCCCc-----CcceEEEEEEECCEEEEEeCCCC
Confidence 9999986 57999999999999999997654
No 24
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.91 E-value=2.3e-25 Score=207.21 Aligned_cols=110 Identities=24% Similarity=0.387 Sum_probs=95.6
Q ss_pred ccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccC----CeeeccCCCeeEcC-C
Q 009406 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE----GRIQCPYHGWEYST-D 288 (535)
Q Consensus 214 ~~~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~----~~l~CPyHGW~Fd~-d 288 (535)
..+.|++||.++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|.+.+ +.|+||||||+||. |
T Consensus 13 ~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r-~~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~t 91 (157)
T 3d89_A 13 KKYTSVCVGREEDIRKSERMTAVVHDREVVIFY-HKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLAT 91 (157)
T ss_dssp -CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEE-ETTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred CCCceEEEEEHHHCCCCCeEEEEECCEEEEEEE-ECCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCC
Confidence 467899999999999899999999999999999 59999999999999999999998753 68999999999997 9
Q ss_pred CCccc--c-CCccc-------ccccccccceEEecCcEEEcCCCCC
Q 009406 289 GKCEK--M-PSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEP 324 (535)
Q Consensus 289 G~c~~--i-P~~~~-------~~~~L~~~pv~e~~G~IwV~l~~~~ 324 (535)
|+|+. + |.... ...+|++|||++++|+|||++++.+
T Consensus 92 G~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v~~G~V~V~~~~~~ 137 (157)
T 3d89_A 92 GEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEP 137 (157)
T ss_dssp CEEEEEECCCC-----CEEEEEEECSCEEEEEEETTEEEEECCCCS
T ss_pred cCEEEeccCCCccccccccccccCcceEEEEEEECCEEEEEeCCCC
Confidence 99986 3 64211 1368999999999999999997654
No 25
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.91 E-value=8.7e-25 Score=194.68 Aligned_cols=101 Identities=20% Similarity=0.218 Sum_probs=88.9
Q ss_pred CceEEeeecCCCCCCCeEEEEEC-CeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccC-----CeeeccCCCeeEc-CC
Q 009406 216 NFWFPVAFSTDLKDDTMVPFDCF-EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-----GRIQCPYHGWEYS-TD 288 (535)
Q Consensus 216 ~~W~~va~s~eL~~g~~~~~~l~-g~~vvv~R~~dG~i~A~~n~CpHRga~Ls~G~v~~-----~~l~CPyHGW~Fd-~d 288 (535)
+.|++||.++||++|..+.+.+. |++|+|||..||+++|+.|+|||+|++|+.|.+.+ ..|+||||||+|| .|
T Consensus 8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~t 87 (119)
T 4aiv_A 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDD 87 (119)
T ss_dssp EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCCC
Confidence 57999999999999998888885 79999999999999999999999999998765432 2599999999999 59
Q ss_pred CCccccCCcccccccccccceEE-ecCcEEEcCC
Q 009406 289 GKCEKMPSTQLRNVKIKSLPCFE-QEGMIWIWPG 321 (535)
Q Consensus 289 G~c~~iP~~~~~~~~L~~~pv~e-~~G~IwV~l~ 321 (535)
|+|+..|. .++++|||++ .+|.|||.+.
T Consensus 88 G~~~~~p~-----~~l~~ypv~ve~dG~V~V~~~ 116 (119)
T 4aiv_A 88 GSCLDDPR-----VSVPVYPARVTPEGRIQVARV 116 (119)
T ss_dssp CBBSSCTT-----CBCCEECEEECTTSEEEEEEE
T ss_pred CcCcCCCC-----CccceEEEEEEeCCEEEEecC
Confidence 99999886 4699999985 5899999763
No 26
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.88 E-value=4.7e-23 Score=195.11 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=88.3
Q ss_pred hhHHHHHHHHhhhhhcccCCcCcccccCCCCCChhhhHHHhccCCCCcccccCCCCCccccccCceEEeeecCCCCCCCe
Q 009406 153 DKLAYMEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTM 232 (535)
Q Consensus 153 ~~~~~me~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~W~~va~s~eL~~g~~ 232 (535)
++-..|.++.||.||+++.++.++.+.+...+.... .+. ..+. ...+|+. ..||.++||++|++
T Consensus 2 ~~~~~~~~~~rr~fl~~~~~a~~~~~~~~~~~~~~~---~~~-~~~~------~~~~~p~------~~v~~~~dL~~g~~ 65 (175)
T 4aay_B 2 SRCQNMVDIGRRQFLRGGALAAAGATAAVFGVGAPQ---ARA-ATAA------AGVEYPA------NRLANISELTLNEP 65 (175)
T ss_dssp ----------------------------------------------C------CSCCCCC------EEEEEGGGCBBTBC
T ss_pred CcchhhccccHHHHhhhhHHhhhheeEecccccccc---ccc-cccC------cccCCCc------ceEEEHHHCCCCCE
Confidence 345678899999999977666542221111110000 000 0000 1124443 37999999999999
Q ss_pred EEEEECC--eeEEEEEc---------CCCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcC--CCCccccCCccc
Q 009406 233 VPFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST--DGKCEKMPSTQL 299 (535)
Q Consensus 233 ~~~~l~g--~~vvv~R~---------~dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~--dG~c~~iP~~~~ 299 (535)
+.+++.+ .+++|+|. .+|+++|+.|+|||+|++|++| .+++.|+||||||+||. +|+|+..|+.
T Consensus 66 ~~v~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~~~~~i~CP~Hg~~Fd~~~tG~~~~gPa~-- 142 (175)
T 4aay_B 66 LDVAYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-ADNKTFNCPGHFSVFDPEKGGQQVWGQAT-- 142 (175)
T ss_dssp EEEESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEEGGGTTEEEECSCS--
T ss_pred EEEEECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-CCCCEEEcCCCCCEECCCCCceEecCCCC--
Confidence 9999974 58999997 5999999999999999999998 67889999999999996 5999999974
Q ss_pred ccccccccceEE-ecCcEEEc
Q 009406 300 RNVKIKSLPCFE-QEGMIWIW 319 (535)
Q Consensus 300 ~~~~L~~~pv~e-~~G~IwV~ 319 (535)
..|++||+++ .+|.||+-
T Consensus 143 --~~L~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 143 --QNLPQYVLRVADNGDIFAE 161 (175)
T ss_dssp --SCCCBEEEEECTTSEEEEE
T ss_pred --CCcCEEEEEEEcCCEEEEE
Confidence 4799999999 68999963
No 27
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.84 E-value=7.3e-21 Score=171.53 Aligned_cols=97 Identities=16% Similarity=0.284 Sum_probs=88.7
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcC--------------------------CCcEEEEeecCCCCCCCCCCCc
Q 009406 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLGS 270 (535)
Q Consensus 217 ~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~--------------------------dG~i~A~~n~CpHRga~Ls~G~ 270 (535)
.|..+ ..++|++|+.+.+.+.|.+++|+|.. +|+++|+.|+|||+|++|+.|.
T Consensus 5 ~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g~ 83 (129)
T 1rie_A 5 SKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANA 83 (129)
T ss_dssp SSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETC
T ss_pred CceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeeccccc
Confidence 45566 88999999999999999999999964 8999999999999999999998
Q ss_pred ccCCeeeccCCCeeEcCCCCccccCCcccccccccccceEE-ecCcEEE
Q 009406 271 VNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 318 (535)
Q Consensus 271 v~~~~l~CPyHGW~Fd~dG~c~~iP~~~~~~~~L~~~pv~e-~~G~IwV 318 (535)
++++.|.||||||+||.+|+|+..|+. ..|+.||+++ .+|.|||
T Consensus 84 ~~~~~i~CP~Hg~~fd~~G~~~~~P~~----~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 84 GDFGGYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp TTTEEEEETTTTEEEETTCCEEESSCC----SCCCCCCEEESSSSEEEE
T ss_pred CCCCEEEcCCCCCEEcCCCCEeeCCCC----CCCCceeEEEEeCCEEEE
Confidence 888899999999999999999999874 4799999999 8999987
No 28
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.82 E-value=7.1e-21 Score=173.84 Aligned_cols=101 Identities=17% Similarity=0.274 Sum_probs=88.5
Q ss_pred CceEEeee-cCCCCCCCeEEEE-ECCeeEEEEEcCCCcE--EEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCc
Q 009406 216 NFWFPVAF-STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKC 291 (535)
Q Consensus 216 ~~W~~va~-s~eL~~g~~~~~~-l~g~~vvv~R~~dG~i--~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~dG~c 291 (535)
..|+.++. .+||++|..+.+. +.|.+++++|+.+|++ +|+.|+|||+|++|+.|. .++.|+||||||+||.||+|
T Consensus 20 g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~ 98 (139)
T 1rfs_A 20 GNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYNNQGRV 98 (139)
T ss_dssp SCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEETTCCE
T ss_pred CCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCC-CCCEEEcCCCCCEECCCCCC
Confidence 46777887 8999987766665 5788888888889999 999999999999999877 56899999999999999999
Q ss_pred cccCCcccccccccccceEEecCcEEEcCC
Q 009406 292 EKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 321 (535)
Q Consensus 292 ~~iP~~~~~~~~L~~~pv~e~~G~IwV~l~ 321 (535)
+.+|+. ..|++||+++++|.|||.+.
T Consensus 99 ~~~P~~----~~L~~~~v~v~~g~V~V~~~ 124 (139)
T 1rfs_A 99 VRGPAP----LSLALAHCDVDDGKVVFVPW 124 (139)
T ss_dssp EESSCC----SCCCEEEEEEETTEEEEEEC
T ss_pred ccCCCC----CCCCEEEEEEECCEEEEEeC
Confidence 999873 57999999999999999763
No 29
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.81 E-value=3.5e-20 Score=167.96 Aligned_cols=98 Identities=17% Similarity=0.201 Sum_probs=87.6
Q ss_pred ceEEeeecCCCCCCCeEEEEEC--CeeEEEEEcC---------CCcEEEEeecCCCCCCCCCCCcccCCeeeccCCCeeE
Q 009406 217 FWFPVAFSTDLKDDTMVPFDCF--EEPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY 285 (535)
Q Consensus 217 ~W~~va~s~eL~~g~~~~~~l~--g~~vvv~R~~---------dG~i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~F 285 (535)
.|+.||..+||++|+++.+++. +.+++|+|.. +|+++|+.|+|||+|++|+.+ ..++.|+||||||+|
T Consensus 7 p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~~~~~i~CP~Hg~~F 85 (133)
T 1g8k_B 7 PATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-SSSKTFSCPCHFTEF 85 (133)
T ss_dssp CCEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEE
T ss_pred CceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCcc-cCCCEEECCCCCCEE
Confidence 3789999999999999999986 8999999975 899999999999999999973 467899999999999
Q ss_pred cC--CCCccccCCcccccccccccceEEe--cCcEEEc
Q 009406 286 ST--DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW 319 (535)
Q Consensus 286 d~--dG~c~~iP~~~~~~~~L~~~pv~e~--~G~IwV~ 319 (535)
|. +|+|+..|+. ..|++|++++. +|.|||.
T Consensus 86 d~~~~G~~~~gP~~----~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 86 DAEKAGQMICGEAT----ADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp EGGGTTEEEESSCS----SCCCEEEEEEETTTTEEEEE
T ss_pred CCCCCCCEEcCCCC----CCCCEEEEEEECCCCEEEEE
Confidence 97 8999999874 47999999998 6779984
No 30
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.64 E-value=2.1e-20 Score=169.39 Aligned_cols=97 Identities=16% Similarity=0.303 Sum_probs=81.9
Q ss_pred eecCCCCCCCeEEEE-ECCeeEEEEEcCCCc--EEEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccccCCcc
Q 009406 222 AFSTDLKDDTMVPFD-CFEEPWVIFRGKDGI--PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 298 (535)
Q Consensus 222 a~s~eL~~g~~~~~~-l~g~~vvv~R~~dG~--i~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~dG~c~~iP~~~ 298 (535)
...+++++|+...+. +.|.+.+++|..+|+ ++|+.|+|||+|++|+.|. .++.|+||||||+||.+|+|+.+|+.
T Consensus 21 ~~~~~l~~g~~~~v~~l~g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~~~~P~~- 98 (133)
T 3azc_A 21 EYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV-SENKFICPCHGSQYDSTGKVVRGPAP- 98 (133)
Confidence 456778887776666 445566666667999 9999999999999999987 66899999999999999999999874
Q ss_pred cccccccccceEE-ecCcEEEcCCCC
Q 009406 299 LRNVKIKSLPCFE-QEGMIWIWPGDE 323 (535)
Q Consensus 299 ~~~~~L~~~pv~e-~~G~IwV~l~~~ 323 (535)
..|++||+++ .+|.|||.++.+
T Consensus 99 ---~~L~~ypv~v~~~g~V~V~~~~e 121 (133)
T 3azc_A 99 ---LSLALVKATVTEDDKLVFTPWTE 121 (133)
Confidence 4799999999 999999987543
No 31
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.74 E-value=7.4e-18 Score=160.88 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=85.4
Q ss_pred cCceEEeeecCCCCCCCeEEEEECCeeEEEEEcC--------------------------CCcEEEEeecCCCCCCCCCC
Q 009406 215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHL 268 (535)
Q Consensus 215 ~~~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~~--------------------------dG~i~A~~n~CpHRga~Ls~ 268 (535)
...|+.| ..++|++|+.+.+.+.|++++|+|.. +|+++|+.|+|||+||.+..
T Consensus 60 a~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~ 138 (185)
T 3cx5_E 60 AMAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIG 138 (185)
T ss_dssp CCCCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEE
T ss_pred ccCcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceecc
Confidence 3568899 69999999999999999999999974 69999999999999995443
Q ss_pred CcccCCeeeccCCCeeEcCCCCccccCCcccccccccccceEEecCcEEE
Q 009406 269 GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 318 (535)
Q Consensus 269 G~v~~~~l~CPyHGW~Fd~dG~c~~iP~~~~~~~~L~~~pv~e~~G~IwV 318 (535)
+..+++.|.||||||+||.+|+|+.+|+. ..|..+|+.+.+|.|||
T Consensus 139 ~~~~~~~~~CPcHGs~FD~~G~v~~gPa~----~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 139 EAGDFGGWFCPCHGSHYDISGRIRKGPAP----LNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp EETTTTEEEETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTEEEE
T ss_pred CCCCCCEEEcCCCCCEECCCCCEecCCCC----CCcceEEEEEECCEEEE
Confidence 33356899999999999999999999873 46888888888999987
No 32
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.73 E-value=1.6e-17 Score=158.84 Aligned_cols=97 Identities=22% Similarity=0.254 Sum_probs=84.4
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEc----------------------------------------CCCcEEEEe
Q 009406 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG----------------------------------------KDGIPGCVQ 256 (535)
Q Consensus 217 ~W~~va~s~eL~~g~~~~~~l~g~~vvv~R~----------------------------------------~dG~i~A~~ 256 (535)
.|+.+ ..++|++|+.+.+...|++|+|+|. .+|+++|+.
T Consensus 48 ~~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~ 126 (187)
T 2qjy_C 48 ASIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMW 126 (187)
T ss_dssp CCEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEE
T ss_pred ccEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEe
Confidence 35555 8999999999999999999999992 289999999
Q ss_pred ecCCCCCCCCCCC-cccCCeeeccCCCeeEcCCCCccccCCcccccccccccceEEe-cCcEEE
Q 009406 257 NTCAHRACPLHLG-SVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI 318 (535)
Q Consensus 257 n~CpHRga~Ls~G-~v~~~~l~CPyHGW~Fd~dG~c~~iP~~~~~~~~L~~~pv~e~-~G~IwV 318 (535)
|+|||+||+|+.+ .++.+.|.||||||+||.+|+|+..|+. ..|+.||+++. +|.|+|
T Consensus 127 ~~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~----~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 127 GVCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp CCCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEEEETTEEEE
T ss_pred CccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCC----CCCceEEEEEEeCCEEEE
Confidence 9999999999983 4444799999999999999999999874 47999999886 688887
No 33
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.72 E-value=1.1e-17 Score=160.87 Aligned_cols=94 Identities=17% Similarity=0.293 Sum_probs=86.1
Q ss_pred eeecCCCCCCCeEEEEECCeeEEEEEcC--------------------------CCcEEEEeecCCCCCCCCCCCcccCC
Q 009406 221 VAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLGSVNEG 274 (535)
Q Consensus 221 va~s~eL~~g~~~~~~l~g~~vvv~R~~--------------------------dG~i~A~~n~CpHRga~Ls~G~v~~~ 274 (535)
.+..++|++|+.+.+...|++++|+|.. +|+++|+.|+|||+||+|+.|.++.+
T Consensus 75 ~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~~ 154 (196)
T 1pp9_E 75 EIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFG 154 (196)
T ss_dssp EEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTTS
T ss_pred EEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCCC
Confidence 4789999999999999999999999862 89999999999999999999887778
Q ss_pred eeeccCCCeeEcCCCCccccCCcccccccccccceEE-ecCcEEE
Q 009406 275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 318 (535)
Q Consensus 275 ~l~CPyHGW~Fd~dG~c~~iP~~~~~~~~L~~~pv~e-~~G~IwV 318 (535)
.|.||||||+||.+|+++.+|+. ..|..||+++ .+|.|+|
T Consensus 155 ~~~CP~HGs~FD~~G~v~~gPa~----~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 155 GYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp SEEETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTTEEEE
T ss_pred EEEeCCCCCEECCCCCCccCCCC----CCCcceeEEEEECCEEEE
Confidence 99999999999999999999874 4799999998 7899987
No 34
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.72 E-value=1.7e-17 Score=151.78 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=83.7
Q ss_pred eecCCCCCCCeEEEEECCeeEEEEEcC----------------------------------------CCcEEEEeecCCC
Q 009406 222 AFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------------DGIPGCVQNTCAH 261 (535)
Q Consensus 222 a~s~eL~~g~~~~~~l~g~~vvv~R~~----------------------------------------dG~i~A~~n~CpH 261 (535)
...++|++|+.+++...|+||.|.|.. +|+++|+.|+|||
T Consensus 6 vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H 85 (141)
T 2nwf_A 6 VDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH 85 (141)
T ss_dssp EECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTT
T ss_pred EecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCC
Confidence 367899999999999999999999851 7899999999999
Q ss_pred CCCCCCC-CcccCCeeeccCCCeeEcCCCCccccCCcccccccccccceEE-ecCcEEE
Q 009406 262 RACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 318 (535)
Q Consensus 262 Rga~Ls~-G~v~~~~l~CPyHGW~Fd~dG~c~~iP~~~~~~~~L~~~pv~e-~~G~IwV 318 (535)
+|++|+. +.++++.|.||||||+||.+|+|+.+|+. ..|..||+++ .+|.|+|
T Consensus 86 ~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~----~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 86 LGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp TCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEESSSSEEEE
T ss_pred CCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCC----CCCCceeEEEEECCEEEE
Confidence 9999998 77667899999999999999999999874 4799999998 7899987
No 35
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.71 E-value=1.4e-17 Score=156.19 Aligned_cols=98 Identities=20% Similarity=0.288 Sum_probs=82.0
Q ss_pred ecCCCCCCCeEEEEECCee-------------EEEEEc-------------CCCcEEEEeecCCCCCCCCCCCcccCCee
Q 009406 223 FSTDLKDDTMVPFDCFEEP-------------WVIFRG-------------KDGIPGCVQNTCAHRACPLHLGSVNEGRI 276 (535)
Q Consensus 223 ~s~eL~~g~~~~~~l~g~~-------------vvv~R~-------------~dG~i~A~~n~CpHRga~Ls~G~v~~~~l 276 (535)
..++|++|+.+.+..-|.+ +++.|- .+| ++||.|+|||+|++|+.|.++++.|
T Consensus 26 ~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-v~A~~~~CpH~G~~L~~g~~~~~~i 104 (165)
T 1nyk_A 26 RLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEG-VVAYSAVCTHLGCIVSQWVADEEAA 104 (165)
T ss_dssp BGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGSCHHHHTTCBTT-EEEEECBCTTTCCBCCEEEGGGTEE
T ss_pred cHHHCCCCCEEEEEeCCCcchhhccCcchhcchheeccChhhcCccccccccCC-EEEEEeecCCCCeEcccccCCCCEE
Confidence 6788888888888764443 556665 355 9999999999999999888888999
Q ss_pred eccCCCeeEcC-CCC-ccccCCcccccccccccceEEecCcEEEcCCCCCC
Q 009406 277 QCPYHGWEYST-DGK-CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (535)
Q Consensus 277 ~CPyHGW~Fd~-dG~-c~~iP~~~~~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (535)
.||||||+||. +|. |+.+|+. ..|..|++++.+|.|||+++...+
T Consensus 105 ~CP~Hgs~Fd~~tG~~~~~gPa~----~~L~~~~v~v~~g~V~v~~~~~~~ 151 (165)
T 1nyk_A 105 LCPCHGGVYDLRHGAQVIAGPPP----RPVPQLPVRVEDGVLVAAGEFLGP 151 (165)
T ss_dssp ECTTTCCEEEGGGTTEEEESSCS----SCCCEECEEEETTEEEECSSCSSC
T ss_pred ECCCCCCEEcCCCCCeeecCCCC----CCCcEEEEEEECCEEEEEecCccc
Confidence 99999999996 586 9999873 479999999999999999876543
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.68 E-value=7.9e-18 Score=159.77 Aligned_cols=92 Identities=18% Similarity=0.325 Sum_probs=81.8
Q ss_pred cCCCCCCCeEEEE-ECCeeEEEEEcCCCcE--EEEeecCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccccCCcccc
Q 009406 224 STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300 (535)
Q Consensus 224 s~eL~~g~~~~~~-l~g~~vvv~R~~dG~i--~A~~n~CpHRga~Ls~G~v~~~~l~CPyHGW~Fd~dG~c~~iP~~~~~ 300 (535)
.++|++|+...+. +.|++++++|+.+|++ +|+.|+|||+||+|+.+. .++.|.||||||+||.+|+|+.+|+.
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~-~~~~~~CP~Hgs~Fd~~G~~~~gPa~--- 145 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNA-AENKFKCPCHGSQYDETGRVIRGPAP--- 145 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCS-SSSSEECTTTCCEECSSSCCCSSSCC---
T ss_pred ccccCCCceEEEeccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccC-CCCEEECCCCCCEECCCCcEecCCCC---
Confidence 4678888877776 6789999999999998 999999999999999887 56799999999999999999999873
Q ss_pred cccccccceEEecCcEEEcC
Q 009406 301 NVKIKSLPCFEQEGMIWIWP 320 (535)
Q Consensus 301 ~~~L~~~pv~e~~G~IwV~l 320 (535)
..|+.||+++.+|.|||.+
T Consensus 146 -~~L~~~~v~v~~g~v~v~~ 164 (179)
T 1vf5_D 146 -LSLALCHATVQDDNIVLTP 164 (179)
T ss_dssp -SCCBCCCCCCSSSSCCCCC
T ss_pred -CCCCeEEEEEECCEEEEEe
Confidence 4799999999999999965
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.59 E-value=1.3e-16 Score=154.41 Aligned_cols=85 Identities=18% Similarity=0.284 Sum_probs=72.1
Q ss_pred EEEEECCeeEEEEEcC------------CCcEEEEeecCCCCCCCCCCCcc-----------cCCeeeccCCCeeEcCC-
Q 009406 233 VPFDCFEEPWVIFRGK------------DGIPGCVQNTCAHRACPLHLGSV-----------NEGRIQCPYHGWEYSTD- 288 (535)
Q Consensus 233 ~~~~l~g~~vvv~R~~------------dG~i~A~~n~CpHRga~Ls~G~v-----------~~~~l~CPyHGW~Fd~d- 288 (535)
+.+++.+.+++++|+. +|+++|+.|+|||+|++|+.|.+ .++.|.||||||+||.+
T Consensus 56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~t 135 (204)
T 1jm1_A 56 QITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKD 135 (204)
T ss_dssp CCCEEECTTTTSSCTTGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGG
T ss_pred ceEeeCCceEEEEecCccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCC
Confidence 4567788888888876 89999999999999999998853 56899999999999975
Q ss_pred -CCccccCCcccccccccccceEEe--cCcEEEcCC
Q 009406 289 -GKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIWPG 321 (535)
Q Consensus 289 -G~c~~iP~~~~~~~~L~~~pv~e~--~G~IwV~l~ 321 (535)
|+|+..|+. ..|+.|++.+. +|.|||...
T Consensus 136 GG~v~~gPa~----~~L~~~~v~v~~~~g~v~v~g~ 167 (204)
T 1jm1_A 136 GGVVVSGPAP----RPLPIVILDYDSSTGDIYAVGT 167 (204)
T ss_dssp TSEEEESSCC----SCCCBEEEEECTTTCEEEEEEE
T ss_pred CCeEecCCCC----CCCCeEeeEEEecCCEEEEEeC
Confidence 699998874 46898998876 899998753
No 38
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=75.52 E-value=6.6 Score=31.38 Aligned_cols=57 Identities=32% Similarity=0.468 Sum_probs=49.4
Q ss_pred eccccchhHHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHH
Q 009406 88 CDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (535)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~ 150 (535)
-||..|.=+-.|-.-=.|+++-||..+- .-|..|+.|.+.|.+...++-+.||+|+.
T Consensus 14 ~DW~nRe~ie~is~~I~~~v~FLN~F~~------sce~KLa~ln~kL~~lE~~L~iLEAklsS 70 (73)
T 3pp5_A 14 KDWEQREFIEDMSINIQKIVEFLNKFEL------STRNKLSDLNEKLTILDRQVDYLEATFKT 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4999998887777777899999998753 46788999999999999999999999974
No 39
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=69.04 E-value=7.2 Score=31.34 Aligned_cols=57 Identities=30% Similarity=0.463 Sum_probs=48.9
Q ss_pred eccccchhHHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHH
Q 009406 88 CDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (535)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~ 150 (535)
-||..|+=+-.|-..=.++++-||..+- .-|..|+.|.+.|.+...++-+.||+|+.
T Consensus 14 ~DW~nRe~ie~in~~I~~~v~FLN~F~~------sce~KLa~ln~KL~~LEr~L~iLEAklss 70 (75)
T 3p8c_E 14 QDWANREYIEIITSSIKKIADFLNSFDM------SCRSRLATLNEKLTALERRIEYIEARVTK 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5999999887777777899999998753 35788999999999999999999999974
No 40
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=65.75 E-value=14 Score=35.14 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=50.3
Q ss_pred CceeehHhHHHHhh-------hcceeeccccc--------hhHH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHH
Q 009406 69 GKFLDVNQALEVAR-------YDIQYCDWRAR--------QDVL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQE 132 (535)
Q Consensus 69 ~~~~~~~~~~~~~~-------~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (535)
-+|-.+|+|.++++ ||++.-.+... .+.| .+|++++.+.++=+. ..+..|++++.+.++
T Consensus 91 ~~f~~In~AY~vLsdp~~R~~Yd~~l~G~~~~~e~~~~~d~~fLme~me~~E~le~~~~~-----~~l~~l~~~~~~~~~ 165 (207)
T 3bvo_A 91 KHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESE-----AAMKEIESIVKAKQK 165 (207)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCCSSCSSSSCHHHHHHHHHHHHHHHHCCSH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHhcCCCcccccccCCCHHHHHHHHHHHHHHHHccCH-----HHHHHHHHHHHHHHH
Confidence 36789999999874 66543333222 2355 599999999986543 225666666666555
Q ss_pred HHH----HHHHHHhhhHhhHHHhhhhHHHHHHHHh
Q 009406 133 DLA----QAHRQVHISEARVATALDKLAYMEALVN 163 (535)
Q Consensus 133 ~~~----~~~~~~~~s~~r~~~~l~~~~~me~~~~ 163 (535)
++. +|=.+-.. ......+.||-++.++.+
T Consensus 166 ~~~~~l~~~~~~~d~--~~A~~~v~kL~y~~kl~~ 198 (207)
T 3bvo_A 166 EFTDNVSSAFEQDDF--EEAKEILTKMRYFSNIEE 198 (207)
T ss_dssp HHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHH
Confidence 543 33222112 223356666666655443
No 41
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=65.36 E-value=13 Score=34.24 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=50.7
Q ss_pred CceeehHhHHHHhh-------hcceeeccccch--------hHH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHH
Q 009406 69 GKFLDVNQALEVAR-------YDIQYCDWRARQ--------DVL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQE 132 (535)
Q Consensus 69 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (535)
-+|--+|+|.+++. ||...--..... +.| .+|++++++.|+-+. .+..++..|++++....+
T Consensus 49 ~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~~e~~~~~d~~fLme~me~rE~lee~~~~--~d~~~l~~l~~~~~~~~~ 126 (171)
T 1fpo_A 49 QQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQA--KDEARLESFIKRVKKMFD 126 (171)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHTTTCCTTCSSSCCSCHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHhcCCCccccccccCCHHHHHHHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHHH
Confidence 47999999999875 565433332222 245 499999999987542 222335566655555433
Q ss_pred HH----HHHHHHHhhhHhhHHHhhhhHHHHHHHH
Q 009406 133 DL----AQAHRQVHISEARVATALDKLAYMEALV 162 (535)
Q Consensus 133 ~~----~~~~~~~~~s~~r~~~~l~~~~~me~~~ 162 (535)
++ .+|=..-... .....+.||-++.++.
T Consensus 127 ~~~~~l~~~~~~~~~~--~A~~~~~kl~y~~kl~ 158 (171)
T 1fpo_A 127 TRHQLMVEQLDNETWD--AAADTCRKLRFLDKLR 158 (171)
T ss_dssp HHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcHH--HHHHHHHHHHHHHHHH
Confidence 33 3433322332 2234556666665544
No 42
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=65.03 E-value=26 Score=32.50 Aligned_cols=94 Identities=14% Similarity=0.205 Sum_probs=51.3
Q ss_pred cCCceeehHhHHHHhh-------hccee-eccccch------------h-HHHHHHHHHHHHHhhChhhhhccchhhHHH
Q 009406 67 CKGKFLDVNQALEVAR-------YDIQY-CDWRARQ------------D-VLTIMLLHEKVVEVLNPLARDYKSIGTMKK 125 (535)
Q Consensus 67 ~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (535)
..-+|..+|+|.+++. ||.+- ......+ + |..+|++|+++.|.=+...-+.- ...+++
T Consensus 54 a~~~f~~i~~AY~vL~dp~~R~~Yd~~l~~g~~~~~e~~~~~~~~~d~~fLme~me~rE~leea~~~~~l~~l-~~~~~~ 132 (181)
T 3uo3_A 54 GSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLL-EKQNKE 132 (181)
T ss_dssp CSSGGGSHHHHHHHHHSHHHHHHHHHHHHHCCCTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHcChHHHHHHHHHHHhCCCccccccccccccCCHHHHHHHHHHHHHHHhccCHHHHHHH-HHHHHH
Confidence 6778999999999864 66654 2222211 2 34899999999986332221100 112333
Q ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHHHHHh
Q 009406 126 ELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (535)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me~~~~ 163 (535)
++..+.+++.+|=.+-...+ ....+.||-+++++.+
T Consensus 133 ~~~~~~~~l~~~~~~~d~~~--A~~~~~kL~y~~kl~~ 168 (181)
T 3uo3_A 133 RIQDIEAQLGQCYNDKDYAA--AVKLTVELKYWYNLAK 168 (181)
T ss_dssp HHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHH--HHHHHHHHHHHHHHHH
Confidence 34444444444443322222 3355667777666544
No 43
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=50.46 E-value=42 Score=30.73 Aligned_cols=91 Identities=18% Similarity=0.207 Sum_probs=50.6
Q ss_pred CceeehHhHHHHhh-------hcceeeccccch--------h-HHHHHHHHHHHHHhhChhhhh-ccchhhHHHHHHH--
Q 009406 69 GKFLDVNQALEVAR-------YDIQYCDWRARQ--------D-VLTIMLLHEKVVEVLNPLARD-YKSIGTMKKELAE-- 129 (535)
Q Consensus 69 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-- 129 (535)
-+|.-+|+|.++++ ||.+-....... + |..+|++|+++.++-+. .+ ..++..|++++..
T Consensus 52 ~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~~e~~~~~d~~fLme~me~rE~le~~~~~--~d~~~~l~~l~~~~~~~~ 129 (174)
T 3hho_A 52 QQAAQINDAYQTLKDPLRRAEYLLSLQGIEMNAEQQTLQDPMFLMEQMELREELESVTAC--ADPEAALVAFDTKVTAMQ 129 (174)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCC----CCCCHHHHHHHHHHHHHHHHHTSS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHccCCCcccccCCCCCHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHH
Confidence 57899999999875 665444443332 2 34899999999987432 11 1224444444443
Q ss_pred --HHHHHHHHHHHHhhhHhhHHHhhhhHHHHHHHHh
Q 009406 130 --LQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (535)
Q Consensus 130 --~~~~~~~~~~~~~~s~~r~~~~l~~~~~me~~~~ 163 (535)
+.+++.+|=..-...+| ...+.||-++.++.+
T Consensus 130 ~~~~~~l~~~~~~~d~~~A--~~~~~kL~f~~kl~~ 163 (174)
T 3hho_A 130 RHYLAQLQGQLAQSEWLAA--ADQIRKLKFIAKLKN 163 (174)
T ss_dssp HHHHHHHHHHHHTTCHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHH--HHHHHHHHHHHHHHH
Confidence 33444444433333333 244667777665543
No 44
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.24 E-value=57 Score=25.73 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=33.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhH-----hhHHHhhhhHHHHHHHHhhh
Q 009406 118 KSIGTMKKELAELQEDLAQAHRQVHISE-----ARVATALDKLAYMEALVNDR 165 (535)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----~r~~~~l~~~~~me~~~~~~ 165 (535)
+|...|.++|.+|.+||..-.-|-.+.+ +++...-..++.+.++.+.+
T Consensus 9 ~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~er 61 (72)
T 3j21_W 9 MSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEK 61 (72)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998888877665 34444444445554444433
No 45
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=41.79 E-value=6.2 Score=37.16 Aligned_cols=63 Identities=27% Similarity=0.450 Sum_probs=41.5
Q ss_pred ceeeeeecCCCCCCCccCCceeehHhHH--HHhhhcceeeccccchhHHHHHHHHHHHHHhhChhhhhccchhhHHHHHH
Q 009406 51 WSTLFDVEDPRSKVPQCKGKFLDVNQAL--EVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELA 128 (535)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (535)
-..+|.-||||- .|-||= ..--||+.|+|-. .--+.+...|..+-.-+.-|+|||+||+
T Consensus 62 lnqifnkedpry----------evvqagasaahdfdvryldih---------khgreiarllekiqkyfQ~IEtlK~ql~ 122 (294)
T 3caz_A 62 LNQIFNKEDPRY----------EVVQAGASAAHDFDVRYLDIH---------KHGREIARLLEKIQKYRQEIEEIKKEYK 122 (294)
T ss_dssp HTSSCCSCCTTH----------HHHHHHHHHHHHHHHHHHHHH---------HHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcch----------HHHHcccccccccchhhhhHH---------hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456899999985 344543 3346888888732 2223444455555555667999999999
Q ss_pred HHHH
Q 009406 129 ELQE 132 (535)
Q Consensus 129 ~~~~ 132 (535)
+.|+
T Consensus 123 nf~e 126 (294)
T 3caz_A 123 ETDK 126 (294)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 8876
No 46
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.53 E-value=36 Score=25.29 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHhhHH
Q 009406 120 IGTMKKELAELQEDLAQAHRQVHISEARVA 149 (535)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~ 149 (535)
+..||.|+++|+.++..-..+..-..+++.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888887777666665555543
No 47
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.46 E-value=31 Score=23.85 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=20.0
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHh
Q 009406 114 ARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (535)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (535)
..|.++++..|+|+..|++++..-.+.-|
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKH 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777887777777776655544
No 48
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=34.44 E-value=40 Score=24.94 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=27.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhH
Q 009406 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 155 (535)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~ 155 (535)
||..|.|++..|.+++..+..+.-.....+.+++.-+
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~el 49 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDM 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5788899999999998888776666655666666544
No 49
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=34.23 E-value=48 Score=20.69 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 009406 121 GTMKKELAELQEDLAQAHRQV 141 (535)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~ 141 (535)
..|-|||..|||.+.+-..++
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 357789999999988876654
No 50
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=34.08 E-value=1e+02 Score=25.61 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHH
Q 009406 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 156 (535)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~ 156 (535)
|..|.+.+..|++++-++..++..+...+...-.+.+
T Consensus 46 i~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 46 IVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555444444444444444
No 51
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=33.91 E-value=93 Score=32.32 Aligned_cols=60 Identities=17% Similarity=0.173 Sum_probs=40.5
Q ss_pred HHHHHHHHhhChhhhh---ccchhhHHHHHHHHHHHHHHHHHHHh-----------hhHhhHHHhhhhHHHHHH
Q 009406 101 LLHEKVVEVLNPLARD---YKSIGTMKKELAELQEDLAQAHRQVH-----------ISEARVATALDKLAYMEA 160 (535)
Q Consensus 101 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~s~~r~~~~l~~~~~me~ 160 (535)
.+.+++.+.|+....+ ..-...|++||.++|..++++..|-. ..++.|++.+.|+-++|.
T Consensus 377 ~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (471)
T 3mq9_A 377 DAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEG 450 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555444333 22234589999999999999887743 357788888888888763
No 52
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=32.03 E-value=72 Score=29.89 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=34.5
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhH
Q 009406 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 155 (535)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~ 155 (535)
.+|.-|..+.++..+=..-+.+...|+..||++++.+..+...++.+.+..+.-+
T Consensus 17 ~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i 71 (190)
T 4emc_A 17 SADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENS 71 (190)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 3444555555555444444567778888888888888888877777666555443
No 53
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=31.83 E-value=93 Score=25.56 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHh
Q 009406 99 IMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (535)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (535)
|..+-.+|+++.+.+. +. =..++|+|..+++=|.|+|+.+-
T Consensus 37 l~qv~q~~v~ai~sl~--~q-DpnV~kDLdn~~acL~k~~~t~~ 77 (97)
T 3g80_A 37 LEQLAQETQATIQTLM--IA-DPNVNKDLRAFCEFLTVQHQRAY 77 (97)
T ss_dssp HHHHHHHHHHHHHTCC--CC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--cc-CchHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888888877 33 27899999999999999998654
No 54
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=31.13 E-value=1.2e+02 Score=25.00 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHH
Q 009406 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 156 (535)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~ 156 (535)
|..|++.+..|++++-++..++..+...+...-.+++
T Consensus 46 i~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~ 82 (101)
T 3u59_A 46 QQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777766666666665555554444444
No 55
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=30.83 E-value=1.4e+02 Score=23.39 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=29.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhh-h----HhhHHHhhhhHHHHHHHHh
Q 009406 118 KSIGTMKKELAELQEDLAQAHRQVHI-S----EARVATALDKLAYMEALVN 163 (535)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~-s----~~r~~~~l~~~~~me~~~~ 163 (535)
+|...|.++|.+|.+||..-.-|-.+ . -+|+...-..++++..+.+
T Consensus 12 ~s~~EL~~~l~elk~ELf~LR~q~atggql~n~~~ir~vRr~IARi~Tvl~ 62 (71)
T 1vq8_V 12 MTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQG 62 (71)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999887766555 1 1244444444455444444
No 56
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.66 E-value=1.3e+02 Score=24.35 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHH
Q 009406 100 MLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLA 135 (535)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (535)
..|..||-..+..++-=++=|..||.+-..|.++..
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~ 44 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777776666655556666666655444333
No 57
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=30.31 E-value=1.4e+02 Score=23.45 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=22.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhh
Q 009406 118 KSIGTMKKELAELQEDLAQAHRQVHIS 144 (535)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~s 144 (535)
+|...|.++|.+|.+||..-.-|-.+.
T Consensus 16 ~s~eEL~~~L~elk~ELf~LR~q~atg 42 (72)
T 3v2d_2 16 LSPVELEKLVREKKRELMELRFQASIG 42 (72)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999998887776654
No 58
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=29.55 E-value=1.7e+02 Score=25.84 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=29.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHHH
Q 009406 117 YKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (535)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me~ 160 (535)
-+-+-.||.+|..+|+++..+..++--.+.++..-..++..+|+
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777777777777777777766666666666666666653
No 59
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=28.41 E-value=1.3e+02 Score=26.23 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=21.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhh
Q 009406 118 KSIGTMKKELAELQEDLAQAHRQVHIS 144 (535)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~s 144 (535)
+|...|.++|.+|.+||..-.-|-.+.
T Consensus 13 ~s~eEL~~~L~eLK~ELf~LRfq~atg 39 (124)
T 4a17_U 13 QTEEQLVGELGKLQTELSQLRIAKIAG 39 (124)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 568899999999999998877666555
No 60
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=28.11 E-value=22 Score=24.56 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=18.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhh
Q 009406 119 SIGTMKKELAELQEDLAQAHRQVHI 143 (535)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (535)
++..||+.+..||.+..+|..++-.
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~ 29 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVAR 29 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888777766543
No 61
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=27.76 E-value=1.6e+02 Score=23.89 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHHH----------HHHHHHHHhhhHhhHHHhhhhHHH
Q 009406 120 IGTMKKELAELQED----------LAQAHRQVHISEARVATALDKLAY 157 (535)
Q Consensus 120 ~~~~~~~~~~~~~~----------~~~~~~~~~~s~~r~~~~l~~~~~ 157 (535)
+..|+.+++.|+.. +..++.+++.+...+...|..++.
T Consensus 34 l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~ 81 (103)
T 4i0x_B 34 LDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEE 81 (103)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777655 888999999999999999988777
No 62
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=27.52 E-value=1.4e+02 Score=22.92 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=28.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhH----hhHHHhhhhHHHHHHHHh
Q 009406 118 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVN 163 (535)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~r~~~~l~~~~~me~~~~ 163 (535)
+|...|.++|.+|.+||..-.-|-.+.+ +++...-..++.+..+.+
T Consensus 9 ~s~~EL~~~l~elk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~ 58 (66)
T 1r73_A 9 YTDEELKNLLEEKKRQLMELRFQLAMGQLKNTSLIKLTKRDIARIKTILR 58 (66)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCccCcHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999887766655432 233333344444444444
No 63
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=26.89 E-value=1e+02 Score=27.34 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=33.8
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHH
Q 009406 114 ARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (535)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~ 157 (535)
++.-.....||+|+++|++++.+.-.++- +++.+..-|..+++
T Consensus 11 ~~~aa~L~~l~~ql~~l~~~l~~l~~~LP-~~~em~~LL~~i~~ 53 (147)
T 2rjz_A 11 AFQAANLEAYKAQMKEMEESFGALLRQLP-SDTEVPGLLEDITR 53 (147)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHHHTTT-GGGHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHH
Confidence 34445678999999999999999988886 77777777777665
No 64
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=26.69 E-value=36 Score=25.56 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=18.3
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHH
Q 009406 105 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQ 140 (535)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (535)
.|-+.|..++.++ .+|.+|..+|++++.+...+
T Consensus 24 EVD~FLd~v~~~~---~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 24 EVNEFLAQVRKDY---EIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 4555566666554 35677777777777665544
No 65
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=26.32 E-value=1.3e+02 Score=26.27 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=33.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhH-----hhHHHhhhhHHHHHHHHhhhh
Q 009406 118 KSIGTMKKELAELQEDLAQAHRQVHISE-----ARVATALDKLAYMEALVNDRL 166 (535)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----~r~~~~l~~~~~me~~~~~~~ 166 (535)
+|...|.++|.+|.+||..-.-|-.+.+ +++...-..++.+..+.+.+-
T Consensus 12 ~s~eEL~~~L~eLK~ELf~LRfq~atgq~len~~rir~vRrdIARI~Tvl~er~ 65 (123)
T 2zkr_v 12 KKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQ 65 (123)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998877766552 445555555555555555443
No 66
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=25.73 E-value=1.4e+02 Score=23.47 Aligned_cols=34 Identities=12% Similarity=0.328 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHH
Q 009406 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (535)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~ 157 (535)
+-.||++|.+-+.|+.+-+..+++. +.+..||.+
T Consensus 20 l~~Lr~eL~~Ke~eI~~L~e~i~lk----~kd~ErLND 53 (75)
T 3a7o_A 20 LAILQKELKSKEQEIRRLKEVIALK----NKNTERLND 53 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----cccHHHhhH
Confidence 4444555555555555555444444 255555554
No 67
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=25.64 E-value=2e+02 Score=23.80 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=32.9
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHH
Q 009406 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (535)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~ 149 (535)
.-..+..+-+..|-| =+..|..+|..+++.|..|..++-.++.+.+
T Consensus 37 ~~~~~~E~Ei~sL~k---k~~~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 37 ERSKQLEDDIVQLEK---QLRVTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433 3668899999999999999998888888777
No 68
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=25.44 E-value=71 Score=21.65 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=16.0
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHH
Q 009406 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQE 132 (535)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (535)
.+-+||+|+++.. .+|..|++.|++
T Consensus 5 QledKvEel~~~~-------~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 5 QVADKLEEVASKL-------YHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-------HHHHHHHHHHHH
Confidence 4568888887753 356666666654
No 69
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=22.30 E-value=1.6e+02 Score=22.73 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=29.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhH----hhHHHhhhhHHHHHHHHhh
Q 009406 118 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVND 164 (535)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~r~~~~l~~~~~me~~~~~ 164 (535)
+|...|.++|.+|.+||..-.-|-.+.+ +|+...-..++.+..+.+.
T Consensus 9 ~s~~EL~~~l~elk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~e 59 (67)
T 2zjr_V 9 LQATDFAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKAE 59 (67)
T ss_dssp SCHHHHHHHHHTHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999887776655432 2333333344444444443
No 70
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=21.41 E-value=2e+02 Score=25.12 Aligned_cols=27 Identities=41% Similarity=0.420 Sum_probs=21.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhh
Q 009406 118 KSIGTMKKELAELQEDLAQAHRQVHIS 144 (535)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~s 144 (535)
+|...|.++|.+|.+||..-.-|-.+.
T Consensus 14 ~s~eEL~~~L~eLK~ELf~LRfq~atg 40 (124)
T 3iz5_c 14 KSKDDLTKQLAELKTELGQLRIQKVAS 40 (124)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 568899999999999998776665543
No 71
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=21.06 E-value=39 Score=21.63 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 009406 120 IGTMKKELAELQEDLAQA 137 (535)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~ 137 (535)
+..||+|+++|=|.+..|
T Consensus 3 ~e~mr~Q~~~lveKvq~a 20 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQAA 20 (26)
T ss_dssp HHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467899999998887765
No 72
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=20.64 E-value=2.9e+02 Score=22.69 Aligned_cols=57 Identities=12% Similarity=0.198 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHhhHH------HhhhhHHH
Q 009406 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA------TALDKLAY 157 (535)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~------~~l~~~~~ 157 (535)
....-..++.+-+..+-|- +..|..+|...++.|..|+..+-.++.+.+ .+|+|..+
T Consensus 34 ~~e~~~~~~E~ei~sL~kK---iq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 34 QAEDRCKQLEEEQQGLQKK---LKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555433 568889999999999999988888887777 45555444
No 73
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=20.21 E-value=1e+02 Score=28.27 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=46.0
Q ss_pred eehHhHHHH-hhh--c--------ceee-------ccccc-----hhHHHHHHHHHHHHHhhChhh-------------h
Q 009406 72 LDVNQALEV-ARY--D--------IQYC-------DWRAR-----QDVLTIMLLHEKVVEVLNPLA-------------R 115 (535)
Q Consensus 72 ~~~~~~~~~-~~~--~--------~~~~-------~~~~~-----~~~~~~~~~~~~~~~~~~~~~-------------~ 115 (535)
||++.|+|- +|- . ..|+ +||.+ +.+--|-.+=++|.+.|+.+. -
T Consensus 7 Ldld~A~E~L~rLQ~~v~~sVs~Ll~fv~s~~~~~~WR~~~~~le~~i~~i~~a~~~v~~Sl~efL~Farga~~nA~~~~ 86 (163)
T 1z23_A 7 LELEVAVETLARLQQGVSTTVAHLLDLVGSASGPGGWRSTSEPQEPPVQDLKAAVAAVHGAVHELLEFARSAVSSATHTS 86 (163)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCSSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 899999986 332 1 2356 99999 667778888888999998876 4
Q ss_pred hccchhhHHHHHHHHHHHH
Q 009406 116 DYKSIGTMKKELAELQEDL 134 (535)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~ 134 (535)
|..=...||+||.-|.+-+
T Consensus 87 d~~L~~kl~r~Lq~l~ds~ 105 (163)
T 1z23_A 87 DRTLHAKLSRQLQKMEDVY 105 (163)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhHH
Confidence 4444477888888877643
No 74
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=20.15 E-value=19 Score=22.79 Aligned_cols=8 Identities=50% Similarity=0.858 Sum_probs=6.4
Q ss_pred cchhHHHH
Q 009406 92 ARQDVLTI 99 (535)
Q Consensus 92 ~~~~~~~~ 99 (535)
+||||||.
T Consensus 16 t~QDLL~l 23 (26)
T 2h8b_A 16 TQQDLLTL 23 (26)
T ss_dssp CHHHHHTT
T ss_pred cHHHHHhh
Confidence 78999874
No 75
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.14 E-value=1.4e+02 Score=32.21 Aligned_cols=41 Identities=10% Similarity=0.277 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHhhHHHhhhhHHHHHHHH
Q 009406 122 TMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALV 162 (535)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~l~~~~~me~~~ 162 (535)
.|+++++.|++++..-=.++...|+.|..-+.++-.||.-+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999988777888888888887777766655433
Done!