Query 009411
Match_columns 535
No_of_seqs 388 out of 3278
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 12:47:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.6E-70 9.9E-75 593.0 40.9 495 32-534 21-555 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 3.6E-45 7.7E-50 360.0 19.1 274 154-430 1-285 (287)
3 PLN03210 Resistant to P. syrin 100.0 1.2E-39 2.6E-44 373.2 32.8 304 147-479 182-505 (1153)
4 PRK04841 transcriptional regul 99.6 3.1E-14 6.8E-19 162.3 24.7 291 147-477 12-333 (903)
5 COG2909 MalT ATP-dependent tra 99.4 1.4E-11 3.1E-16 129.5 22.7 291 147-478 17-340 (894)
6 PRK00411 cdc6 cell division co 99.4 5.6E-11 1.2E-15 122.3 25.2 288 148-454 29-356 (394)
7 TIGR03015 pepcterm_ATPase puta 99.3 3.7E-10 8E-15 109.9 22.7 181 167-350 40-242 (269)
8 TIGR02928 orc1/cdc6 family rep 99.3 8.8E-10 1.9E-14 112.2 26.3 288 149-455 15-349 (365)
9 PF01637 Arch_ATPase: Archaeal 99.3 1E-11 2.2E-16 118.0 10.7 192 151-345 1-233 (234)
10 TIGR00635 ruvB Holliday juncti 99.2 9.4E-10 2E-14 109.1 21.3 273 148-456 3-289 (305)
11 PF05729 NACHT: NACHT domain 99.2 9.4E-11 2E-15 105.0 12.6 140 171-316 1-163 (166)
12 PRK00080 ruvB Holliday junctio 99.2 1E-09 2.3E-14 109.6 20.7 275 146-456 22-310 (328)
13 COG3899 Predicted ATPase [Gene 99.2 1.9E-09 4.1E-14 119.5 20.0 309 150-480 1-390 (849)
14 COG2256 MGS1 ATPase related to 99.0 1.4E-08 3.1E-13 98.8 14.4 225 146-394 21-266 (436)
15 PRK13342 recombination factor 98.9 2.3E-08 5E-13 103.0 15.6 195 146-364 9-218 (413)
16 PRK06893 DNA replication initi 98.9 3.2E-08 6.9E-13 93.4 14.0 152 169-349 38-206 (229)
17 PRK04195 replication factor C 98.8 2.3E-07 4.9E-12 97.6 19.5 185 145-350 10-206 (482)
18 COG3903 Predicted ATPase [Gene 98.8 9.2E-09 2E-13 100.8 6.7 290 169-478 13-316 (414)
19 COG1474 CDC6 Cdc6-related prot 98.8 6.4E-06 1.4E-10 82.7 27.1 279 150-454 18-332 (366)
20 PTZ00112 origin recognition co 98.8 9.2E-07 2E-11 94.7 21.1 202 149-351 755-987 (1164)
21 PRK07003 DNA polymerase III su 98.8 4.4E-07 9.6E-12 96.5 18.7 181 146-348 13-223 (830)
22 PRK12402 replication factor C 98.7 3.6E-07 7.8E-12 92.0 17.3 197 146-344 12-224 (337)
23 PF13401 AAA_22: AAA domain; P 98.7 2.8E-08 6.2E-13 85.1 7.9 116 169-284 3-125 (131)
24 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.4E-07 3.1E-12 89.1 12.3 169 154-350 22-205 (226)
25 PTZ00202 tuzin; Provisional 98.7 2.6E-06 5.5E-11 84.9 20.6 163 144-316 257-434 (550)
26 PRK00440 rfc replication facto 98.7 1.4E-06 3.1E-11 86.9 18.0 182 146-343 14-200 (319)
27 PF05496 RuvB_N: Holliday junc 98.6 8.4E-07 1.8E-11 81.0 14.4 177 145-350 20-225 (233)
28 PLN03025 replication factor C 98.6 8E-07 1.7E-11 88.5 14.9 181 146-342 10-196 (319)
29 PRK09112 DNA polymerase III su 98.6 2.2E-06 4.8E-11 85.6 17.6 194 145-345 19-239 (351)
30 PRK14949 DNA polymerase III su 98.6 9E-07 2E-11 96.0 15.6 179 146-346 13-221 (944)
31 PRK05564 DNA polymerase III su 98.6 1.2E-06 2.6E-11 87.0 15.5 174 149-344 4-188 (313)
32 PRK12323 DNA polymerase III su 98.6 6.7E-07 1.5E-11 93.9 13.8 197 146-345 13-224 (700)
33 PRK14961 DNA polymerase III su 98.6 1.6E-06 3.5E-11 87.7 16.2 190 146-343 13-217 (363)
34 cd00009 AAA The AAA+ (ATPases 98.6 5.3E-07 1.1E-11 78.5 10.9 121 152-286 1-131 (151)
35 PRK14963 DNA polymerase III su 98.6 2.6E-06 5.6E-11 89.3 17.2 196 146-350 11-222 (504)
36 cd01128 rho_factor Transcripti 98.5 2.4E-07 5.2E-12 87.8 8.2 91 169-260 15-114 (249)
37 PRK08727 hypothetical protein; 98.5 1.9E-06 4E-11 81.6 14.1 168 148-343 18-201 (233)
38 PRK06645 DNA polymerase III su 98.5 2.6E-06 5.6E-11 88.9 16.3 192 146-342 18-225 (507)
39 PF13173 AAA_14: AAA domain 98.5 2.8E-07 6.1E-12 78.6 7.7 119 170-308 2-127 (128)
40 PF13191 AAA_16: AAA ATPase do 98.5 3.2E-07 7E-12 83.6 8.6 48 150-197 1-51 (185)
41 PRK13341 recombination factor 98.5 1.2E-06 2.7E-11 95.1 14.1 172 146-341 25-212 (725)
42 KOG2028 ATPase related to the 98.5 1.3E-06 2.7E-11 83.9 12.2 172 149-340 138-330 (554)
43 PRK08084 DNA replication initi 98.5 3.4E-06 7.4E-11 79.9 14.8 165 156-348 31-211 (235)
44 PRK09087 hypothetical protein; 98.5 2.2E-06 4.8E-11 80.5 13.0 144 169-349 43-198 (226)
45 PRK14956 DNA polymerase III su 98.5 2E-06 4.3E-11 88.0 13.0 193 146-346 15-223 (484)
46 PRK14960 DNA polymerase III su 98.5 4.3E-06 9.3E-11 88.2 15.7 190 146-343 12-216 (702)
47 PRK07940 DNA polymerase III su 98.5 7.1E-06 1.5E-10 83.2 16.8 182 148-345 4-212 (394)
48 PRK14957 DNA polymerase III su 98.4 9.5E-06 2.1E-10 85.3 18.0 181 146-348 13-223 (546)
49 PRK07994 DNA polymerase III su 98.4 3.8E-06 8.2E-11 89.6 15.0 191 146-346 13-221 (647)
50 TIGR02903 spore_lon_C ATP-depe 98.4 6.3E-06 1.4E-10 88.8 16.4 202 146-349 151-398 (615)
51 PRK14962 DNA polymerase III su 98.4 8.2E-06 1.8E-10 84.8 16.7 187 146-350 11-223 (472)
52 PRK07471 DNA polymerase III su 98.4 1E-05 2.2E-10 81.4 16.5 194 145-346 15-238 (365)
53 TIGR01242 26Sp45 26S proteasom 98.4 7.6E-06 1.6E-10 83.1 15.9 172 147-340 120-328 (364)
54 PRK09376 rho transcription ter 98.4 1E-06 2.2E-11 87.3 8.8 100 161-261 159-268 (416)
55 PRK08691 DNA polymerase III su 98.4 6.5E-06 1.4E-10 87.6 15.4 178 146-345 13-219 (709)
56 PF05621 TniB: Bacterial TniB 98.4 9.9E-06 2.1E-10 77.5 15.1 188 155-344 43-259 (302)
57 PRK14958 DNA polymerase III su 98.4 6.1E-06 1.3E-10 86.6 15.1 179 146-344 13-218 (509)
58 PRK14964 DNA polymerase III su 98.4 1.2E-05 2.6E-10 83.3 16.5 174 146-343 10-214 (491)
59 PRK05896 DNA polymerase III su 98.4 7.5E-06 1.6E-10 86.2 15.2 195 146-348 13-223 (605)
60 PRK14955 DNA polymerase III su 98.4 6.3E-06 1.4E-10 84.5 14.3 197 146-343 13-225 (397)
61 PRK14951 DNA polymerase III su 98.4 1.2E-05 2.6E-10 85.6 16.6 195 146-345 13-224 (618)
62 PRK08903 DnaA regulatory inact 98.4 6.9E-06 1.5E-10 77.6 13.3 163 157-351 28-204 (227)
63 TIGR02397 dnaX_nterm DNA polym 98.3 2E-05 4.3E-10 79.9 17.1 183 146-347 11-219 (355)
64 PRK14969 DNA polymerase III su 98.3 1.2E-05 2.6E-10 85.1 15.7 177 146-346 13-221 (527)
65 PRK03992 proteasome-activating 98.3 1E-05 2.2E-10 82.6 14.5 170 148-339 130-336 (389)
66 PRK07764 DNA polymerase III su 98.3 1.4E-05 3.1E-10 88.1 16.5 190 146-343 12-218 (824)
67 TIGR00678 holB DNA polymerase 98.3 2.5E-05 5.4E-10 71.5 15.3 152 161-341 4-186 (188)
68 PRK09111 DNA polymerase III su 98.3 2E-05 4.4E-10 84.1 16.4 197 146-347 21-234 (598)
69 PRK05642 DNA replication initi 98.3 1.6E-05 3.6E-10 75.2 14.0 150 171-349 46-211 (234)
70 PRK14087 dnaA chromosomal repl 98.3 3.1E-05 6.6E-10 80.4 17.2 166 171-350 142-323 (450)
71 TIGR03345 VI_ClpV1 type VI sec 98.3 1.2E-05 2.7E-10 89.6 15.1 179 147-338 185-388 (852)
72 PRK14954 DNA polymerase III su 98.3 2.9E-05 6.2E-10 83.1 16.8 199 146-345 13-228 (620)
73 PRK14970 DNA polymerase III su 98.3 3.9E-05 8.5E-10 78.1 17.3 180 146-343 14-206 (367)
74 PRK14952 DNA polymerase III su 98.3 3.6E-05 7.8E-10 81.8 17.1 195 146-348 10-222 (584)
75 PF00308 Bac_DnaA: Bacterial d 98.2 7.6E-06 1.6E-10 76.6 10.6 162 170-348 34-210 (219)
76 TIGR02639 ClpA ATP-dependent C 98.2 8.6E-06 1.9E-10 90.1 12.5 158 147-316 180-358 (731)
77 TIGR00767 rho transcription te 98.2 6.7E-06 1.4E-10 81.9 10.2 92 169-261 167-267 (415)
78 PRK14959 DNA polymerase III su 98.2 2.7E-05 5.9E-10 82.5 15.3 198 146-351 13-226 (624)
79 PF14516 AAA_35: AAA-like doma 98.2 0.00019 4.1E-09 71.7 20.6 199 147-353 9-246 (331)
80 COG2255 RuvB Holliday junction 98.2 0.00017 3.6E-09 67.7 17.3 178 145-351 22-228 (332)
81 PRK14953 DNA polymerase III su 98.2 8.4E-05 1.8E-09 77.7 17.4 178 146-347 13-221 (486)
82 PRK14950 DNA polymerase III su 98.2 8E-05 1.7E-09 80.2 17.6 196 146-348 13-223 (585)
83 KOG2227 Pre-initiation complex 98.2 0.00033 7.1E-09 70.2 20.1 205 146-351 147-373 (529)
84 TIGR00362 DnaA chromosomal rep 98.1 0.00014 3E-09 75.1 18.2 178 171-365 137-337 (405)
85 CHL00095 clpC Clp protease ATP 98.1 2.9E-05 6.2E-10 87.0 14.0 156 148-315 178-353 (821)
86 PRK07133 DNA polymerase III su 98.1 7.5E-05 1.6E-09 80.4 16.4 189 146-347 15-221 (725)
87 TIGR03689 pup_AAA proteasome A 98.1 9.9E-05 2.2E-09 76.9 16.7 159 147-318 180-380 (512)
88 PRK06305 DNA polymerase III su 98.1 0.00011 2.4E-09 76.3 16.9 177 146-347 14-224 (451)
89 PRK14971 DNA polymerase III su 98.1 0.00013 2.9E-09 78.4 17.9 178 147-343 15-219 (614)
90 PRK08451 DNA polymerase III su 98.1 0.00017 3.8E-09 75.5 18.1 177 146-346 11-218 (535)
91 PRK00149 dnaA chromosomal repl 98.1 0.00014 3E-09 76.1 17.5 179 170-365 148-349 (450)
92 PRK07399 DNA polymerase III su 98.1 0.00042 9E-09 68.4 19.6 192 149-347 4-222 (314)
93 PF05673 DUF815: Protein of un 98.1 0.00015 3.3E-09 67.4 15.3 117 146-288 24-154 (249)
94 KOG0989 Replication factor C, 98.1 1.6E-05 3.4E-10 75.2 8.6 183 145-340 32-224 (346)
95 PHA02544 44 clamp loader, smal 98.1 5.3E-05 1.2E-09 75.5 13.1 146 146-314 18-171 (316)
96 PRK11331 5-methylcytosine-spec 98.1 1.9E-05 4.2E-10 80.0 9.8 108 149-261 175-284 (459)
97 PTZ00454 26S protease regulato 98.0 0.0001 2.3E-09 75.0 14.7 172 147-340 143-351 (398)
98 PRK14948 DNA polymerase III su 98.0 0.00028 6.1E-09 75.9 17.9 196 146-347 13-223 (620)
99 PRK14088 dnaA chromosomal repl 98.0 0.00032 6.9E-09 72.8 17.7 180 170-365 130-332 (440)
100 KOG2543 Origin recognition com 98.0 0.00035 7.5E-09 68.2 16.4 194 149-349 6-229 (438)
101 PRK05563 DNA polymerase III su 98.0 0.00038 8.3E-09 74.3 18.6 190 146-343 13-217 (559)
102 PRK14965 DNA polymerase III su 98.0 0.00016 3.5E-09 77.5 15.8 194 146-349 13-224 (576)
103 KOG0991 Replication factor C, 98.0 0.00013 2.8E-09 66.2 12.3 101 147-261 25-125 (333)
104 PRK06620 hypothetical protein; 98.0 4.5E-05 9.8E-10 71.0 9.9 135 171-344 45-187 (214)
105 TIGR02881 spore_V_K stage V sp 98.0 5.1E-05 1.1E-09 73.3 10.5 133 169-317 41-192 (261)
106 PRK06647 DNA polymerase III su 98.0 0.00032 6.9E-09 74.7 17.1 192 146-345 13-219 (563)
107 TIGR03346 chaperone_ClpB ATP-d 98.0 0.00015 3.3E-09 81.5 15.5 157 147-316 171-349 (852)
108 PRK14086 dnaA chromosomal repl 97.9 0.00071 1.5E-08 71.6 18.7 178 171-365 315-515 (617)
109 PRK10865 protein disaggregatio 97.9 0.00012 2.5E-09 82.1 13.7 157 147-316 176-354 (857)
110 TIGR01241 FtsH_fam ATP-depende 97.9 0.00026 5.7E-09 74.9 15.4 199 146-366 52-296 (495)
111 PRK11034 clpA ATP-dependent Cl 97.9 6.3E-05 1.4E-09 82.5 10.5 157 148-316 185-362 (758)
112 PTZ00361 26 proteosome regulat 97.9 0.00015 3.2E-09 74.5 12.4 171 147-339 181-388 (438)
113 CHL00181 cbbX CbbX; Provisiona 97.9 0.00036 7.9E-09 68.0 14.5 131 171-317 60-210 (287)
114 COG1222 RPT1 ATP-dependent 26S 97.8 0.0017 3.8E-08 63.0 18.1 196 146-365 148-392 (406)
115 TIGR02880 cbbX_cfxQ probable R 97.8 0.00036 7.7E-09 68.1 13.7 130 172-317 60-209 (284)
116 PRK05707 DNA polymerase III su 97.8 0.0004 8.6E-09 69.0 14.1 163 170-346 22-203 (328)
117 CHL00176 ftsH cell division pr 97.8 0.00037 8.1E-09 75.1 14.2 196 148-365 182-423 (638)
118 KOG2004 Mitochondrial ATP-depe 97.7 0.00084 1.8E-08 70.5 15.2 152 149-316 411-596 (906)
119 smart00382 AAA ATPases associa 97.7 0.00014 3.1E-09 62.4 8.4 89 171-262 3-91 (148)
120 PF00004 AAA: ATPase family as 97.7 5.6E-05 1.2E-09 64.5 5.7 69 173-261 1-70 (132)
121 TIGR00763 lon ATP-dependent pr 97.7 0.0039 8.4E-08 69.7 21.5 155 150-316 321-505 (775)
122 PRK12422 chromosomal replicati 97.7 0.00066 1.4E-08 70.3 13.9 151 171-340 142-307 (445)
123 COG0466 Lon ATP-dependent Lon 97.7 0.00049 1.1E-08 72.5 12.2 153 150-316 324-508 (782)
124 COG3267 ExeA Type II secretory 97.6 0.002 4.4E-08 59.8 14.6 188 156-349 38-248 (269)
125 COG0593 DnaA ATPase involved i 97.6 0.0015 3.3E-08 65.8 15.1 179 169-367 112-315 (408)
126 PRK08769 DNA polymerase III su 97.6 0.0024 5.1E-08 63.0 16.2 168 156-345 11-207 (319)
127 PRK08116 hypothetical protein; 97.6 0.0002 4.3E-09 69.1 8.2 100 171-285 115-221 (268)
128 PRK12608 transcription termina 97.6 0.00065 1.4E-08 67.5 11.7 102 158-260 120-231 (380)
129 PRK10536 hypothetical protein; 97.6 0.00034 7.4E-09 65.8 9.0 57 147-205 53-109 (262)
130 KOG0733 Nuclear AAA ATPase (VC 97.6 0.0027 5.8E-08 65.7 15.8 178 148-349 189-409 (802)
131 TIGR00602 rad24 checkpoint pro 97.5 0.0004 8.6E-09 74.4 9.9 51 145-195 80-135 (637)
132 PRK06871 DNA polymerase III su 97.5 0.0047 1E-07 61.0 16.3 171 158-343 11-200 (325)
133 COG1373 Predicted ATPase (AAA+ 97.5 0.002 4.3E-08 65.9 14.1 134 154-311 22-162 (398)
134 PRK06090 DNA polymerase III su 97.5 0.013 2.8E-07 57.7 19.0 171 157-346 11-201 (319)
135 PRK08118 topology modulation p 97.5 8.1E-05 1.8E-09 66.5 3.1 35 171-205 2-37 (167)
136 KOG0731 AAA+-type ATPase conta 97.4 0.0019 4.2E-08 69.4 13.6 175 148-343 310-521 (774)
137 TIGR02640 gas_vesic_GvpN gas v 97.4 0.0038 8.2E-08 60.2 14.4 55 157-218 10-64 (262)
138 PRK10787 DNA-binding ATP-depen 97.4 0.0023 5.1E-08 70.9 14.2 156 149-316 322-506 (784)
139 PF10443 RNA12: RNA12 protein; 97.4 0.0058 1.3E-07 61.5 15.3 202 154-363 1-297 (431)
140 TIGR01243 CDC48 AAA family ATP 97.4 0.0037 8.1E-08 69.6 15.5 171 148-340 452-657 (733)
141 PRK08058 DNA polymerase III su 97.4 0.0058 1.2E-07 61.0 15.3 156 151-315 7-181 (329)
142 CHL00195 ycf46 Ycf46; Provisio 97.4 0.0038 8.3E-08 65.2 14.3 151 170-340 259-429 (489)
143 TIGR01243 CDC48 AAA family ATP 97.3 0.0022 4.8E-08 71.3 13.3 171 148-340 177-381 (733)
144 PRK12377 putative replication 97.3 0.00064 1.4E-08 64.5 7.4 74 169-259 100-173 (248)
145 PRK07993 DNA polymerase III su 97.3 0.0067 1.4E-07 60.5 14.8 172 157-343 10-201 (334)
146 PF00448 SRP54: SRP54-type pro 97.3 0.0016 3.4E-08 59.7 9.5 88 170-259 1-93 (196)
147 COG2812 DnaX DNA polymerase II 97.3 0.0021 4.5E-08 66.8 11.3 187 146-340 13-214 (515)
148 PRK07261 topology modulation p 97.3 0.001 2.2E-08 59.7 7.8 34 172-205 2-36 (171)
149 PRK06835 DNA replication prote 97.2 0.028 6E-07 55.9 18.2 99 171-285 184-289 (329)
150 cd01120 RecA-like_NTPases RecA 97.2 0.0015 3.2E-08 57.8 8.5 40 172-213 1-40 (165)
151 COG1223 Predicted ATPase (AAA+ 97.2 0.0033 7.1E-08 58.4 10.6 170 149-340 121-319 (368)
152 KOG1969 DNA replication checkp 97.2 0.00077 1.7E-08 71.0 7.4 75 169-261 325-399 (877)
153 TIGR03345 VI_ClpV1 type VI sec 97.2 0.0029 6.2E-08 71.0 12.4 106 149-261 566-680 (852)
154 PF04665 Pox_A32: Poxvirus A32 97.2 0.00054 1.2E-08 64.1 5.7 35 172-208 15-49 (241)
155 PRK06964 DNA polymerase III su 97.2 0.026 5.6E-07 56.2 17.6 99 236-345 115-224 (342)
156 PRK06921 hypothetical protein; 97.2 0.0011 2.5E-08 63.8 7.9 71 169-258 116-186 (266)
157 KOG1514 Origin recognition com 97.2 0.02 4.4E-07 60.5 17.2 199 149-350 396-625 (767)
158 KOG0743 AAA+-type ATPase [Post 97.2 0.093 2E-06 53.0 21.2 149 171-351 236-414 (457)
159 PF13177 DNA_pol3_delta2: DNA 97.2 0.006 1.3E-07 54.1 11.8 133 153-304 1-162 (162)
160 PRK00771 signal recognition pa 97.2 0.016 3.4E-07 59.7 16.2 87 169-259 94-185 (437)
161 TIGR01425 SRP54_euk signal rec 97.2 0.023 5E-07 58.1 17.2 28 169-196 99-126 (429)
162 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0028 6E-08 60.2 10.0 89 170-259 19-125 (235)
163 TIGR02237 recomb_radB DNA repa 97.1 0.0022 4.7E-08 59.7 9.0 86 170-259 12-107 (209)
164 KOG0741 AAA+-type ATPase [Post 97.1 0.014 3E-07 59.6 14.6 157 169-351 537-717 (744)
165 KOG0733 Nuclear AAA ATPase (VC 97.1 0.021 4.6E-07 59.3 16.0 128 170-317 545-693 (802)
166 TIGR03499 FlhF flagellar biosy 97.1 0.0031 6.6E-08 61.5 9.8 88 169-258 193-281 (282)
167 TIGR02639 ClpA ATP-dependent C 97.1 0.0056 1.2E-07 68.0 12.7 102 150-261 455-565 (731)
168 PF13207 AAA_17: AAA domain; P 97.1 0.00051 1.1E-08 57.7 3.6 24 172-195 1-24 (121)
169 PRK14722 flhF flagellar biosyn 97.1 0.0032 7E-08 63.1 9.7 88 170-259 137-225 (374)
170 PRK04132 replication factor C 97.1 0.015 3.3E-07 64.3 15.7 151 178-344 574-729 (846)
171 COG1484 DnaC DNA replication p 97.1 0.0038 8.2E-08 59.7 9.8 80 162-260 99-178 (254)
172 COG0542 clpA ATP-binding subun 97.0 0.015 3.2E-07 63.2 15.1 104 150-261 492-605 (786)
173 smart00763 AAA_PrkA PrkA AAA d 97.0 0.0014 3E-08 64.9 6.5 47 150-196 52-104 (361)
174 PRK10867 signal recognition pa 97.0 0.048 1E-06 56.1 17.8 28 169-196 99-126 (433)
175 PRK10733 hflB ATP-dependent me 96.9 0.012 2.6E-07 64.3 13.6 146 171-338 186-355 (644)
176 KOG0734 AAA+-type ATPase conta 96.9 0.0031 6.6E-08 64.2 8.1 93 148-260 303-407 (752)
177 PRK07952 DNA replication prote 96.9 0.0075 1.6E-07 57.1 10.4 89 157-261 84-174 (244)
178 TIGR02902 spore_lonB ATP-depen 96.9 0.035 7.5E-07 59.2 16.5 49 146-194 62-110 (531)
179 TIGR02012 tigrfam_recA protein 96.9 0.0045 9.9E-08 60.8 9.1 83 170-259 55-143 (321)
180 TIGR00959 ffh signal recogniti 96.9 0.059 1.3E-06 55.4 17.4 59 169-228 98-157 (428)
181 PF07693 KAP_NTPase: KAP famil 96.9 0.058 1.3E-06 53.8 17.4 43 155-197 2-47 (325)
182 PRK06696 uridine kinase; Valid 96.9 0.0016 3.4E-08 61.3 5.6 44 153-196 2-48 (223)
183 KOG0730 AAA+-type ATPase [Post 96.9 0.058 1.3E-06 56.8 17.0 131 168-318 466-617 (693)
184 KOG2228 Origin recognition com 96.8 0.016 3.4E-07 56.0 11.7 167 148-317 23-220 (408)
185 COG0470 HolB ATPase involved i 96.8 0.014 3.1E-07 58.2 12.3 137 151-303 3-168 (325)
186 cd00983 recA RecA is a bacter 96.8 0.0055 1.2E-07 60.3 9.0 83 170-259 55-143 (325)
187 COG1066 Sms Predicted ATP-depe 96.8 0.0065 1.4E-07 60.3 9.0 84 170-259 93-178 (456)
188 COG0542 clpA ATP-binding subun 96.8 0.002 4.4E-08 69.7 6.0 157 147-316 168-346 (786)
189 PRK09354 recA recombinase A; P 96.8 0.007 1.5E-07 60.0 9.4 83 170-259 60-148 (349)
190 COG0541 Ffh Signal recognition 96.8 0.16 3.4E-06 51.3 18.6 60 169-230 99-159 (451)
191 PRK04296 thymidine kinase; Pro 96.8 0.0017 3.7E-08 59.3 4.7 111 171-287 3-118 (190)
192 PRK08181 transposase; Validate 96.8 0.009 2E-07 57.5 9.8 78 163-260 101-178 (269)
193 PF01695 IstB_IS21: IstB-like 96.8 0.0046 1E-07 55.7 7.3 73 170-260 47-119 (178)
194 PRK05541 adenylylsulfate kinas 96.7 0.0045 9.7E-08 55.8 7.1 36 169-206 6-41 (176)
195 cd01133 F1-ATPase_beta F1 ATP 96.7 0.013 2.8E-07 56.1 10.3 91 169-260 68-174 (274)
196 PF08423 Rad51: Rad51; InterP 96.7 0.011 2.3E-07 56.8 9.8 89 170-259 38-143 (256)
197 PRK11889 flhF flagellar biosyn 96.7 0.016 3.6E-07 58.0 11.3 89 169-259 240-330 (436)
198 COG1875 NYN ribonuclease and A 96.7 0.014 3.1E-07 56.9 10.5 54 151-204 226-280 (436)
199 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0051 1.1E-07 69.4 8.6 106 149-261 565-679 (852)
200 cd01393 recA_like RecA is a b 96.7 0.0074 1.6E-07 56.8 8.5 54 170-224 19-76 (226)
201 PRK12727 flagellar biosynthesi 96.7 0.014 3E-07 60.8 10.8 88 170-259 350-438 (559)
202 PRK09270 nucleoside triphospha 96.7 0.015 3.2E-07 54.9 10.3 29 168-196 31-59 (229)
203 PRK08939 primosomal protein Dn 96.7 0.013 2.9E-07 57.6 10.3 90 153-260 135-228 (306)
204 COG1618 Predicted nucleotide k 96.6 0.0026 5.7E-08 54.7 4.4 28 171-198 6-33 (179)
205 TIGR02238 recomb_DMC1 meiotic 96.6 0.0096 2.1E-07 58.7 9.1 89 170-259 96-201 (313)
206 PTZ00494 tuzin-like protein; P 96.6 0.99 2.2E-05 45.9 24.2 162 146-316 368-544 (664)
207 PLN03187 meiotic recombination 96.6 0.014 3E-07 58.2 10.0 58 170-228 126-187 (344)
208 PRK09361 radB DNA repair and r 96.6 0.011 2.4E-07 55.7 8.9 44 170-216 23-66 (225)
209 KOG0744 AAA+-type ATPase [Post 96.6 0.006 1.3E-07 58.4 6.9 28 170-197 177-204 (423)
210 CHL00095 clpC Clp protease ATP 96.6 0.0087 1.9E-07 67.4 9.4 106 149-261 509-623 (821)
211 TIGR01359 UMP_CMP_kin_fam UMP- 96.6 0.0064 1.4E-07 55.1 6.9 24 172-195 1-24 (183)
212 PHA02244 ATPase-like protein 96.5 0.04 8.7E-07 54.9 12.7 35 159-195 110-144 (383)
213 KOG0739 AAA+-type ATPase [Post 96.5 0.049 1.1E-06 51.7 12.5 169 149-339 133-334 (439)
214 PRK15455 PrkA family serine pr 96.5 0.0032 6.9E-08 65.8 5.2 48 148-195 75-128 (644)
215 KOG2035 Replication factor C, 96.5 0.067 1.5E-06 50.4 13.2 204 150-367 14-260 (351)
216 PRK12726 flagellar biosynthesi 96.5 0.019 4.2E-07 57.3 10.3 90 169-260 205-296 (407)
217 PRK06547 hypothetical protein; 96.5 0.0042 9.1E-08 55.6 5.3 36 160-195 5-40 (172)
218 PLN00020 ribulose bisphosphate 96.5 0.008 1.7E-07 59.4 7.5 30 168-197 146-175 (413)
219 cd01121 Sms Sms (bacterial rad 96.5 0.012 2.6E-07 59.4 9.0 85 170-259 82-168 (372)
220 PRK07667 uridine kinase; Provi 96.5 0.004 8.6E-08 57.1 5.1 38 159-196 4-43 (193)
221 PRK08699 DNA polymerase III su 96.5 0.043 9.3E-07 54.5 12.8 150 170-342 21-202 (325)
222 PRK12724 flagellar biosynthesi 96.5 0.013 2.8E-07 59.4 9.1 85 170-258 223-308 (432)
223 PRK06526 transposase; Provisio 96.5 0.0065 1.4E-07 58.1 6.6 73 170-260 98-170 (254)
224 COG1419 FlhF Flagellar GTP-bin 96.5 0.032 6.8E-07 55.9 11.5 100 158-259 187-291 (407)
225 TIGR02236 recomb_radA DNA repa 96.5 0.018 4E-07 57.0 10.1 57 170-227 95-155 (310)
226 PF05659 RPW8: Arabidopsis bro 96.5 0.028 6.1E-07 48.5 9.8 110 2-121 3-113 (147)
227 PRK08533 flagellar accessory p 96.4 0.022 4.7E-07 53.7 9.9 52 170-226 24-75 (230)
228 PRK14974 cell division protein 96.4 0.035 7.7E-07 55.1 11.8 89 169-260 139-233 (336)
229 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.026 5.5E-07 53.6 10.4 47 170-220 21-67 (237)
230 KOG0728 26S proteasome regulat 96.4 0.13 2.9E-06 47.6 14.2 128 169-316 180-331 (404)
231 KOG0729 26S proteasome regulat 96.4 0.05 1.1E-06 50.8 11.5 92 148-259 176-280 (435)
232 COG2607 Predicted ATPase (AAA+ 96.4 0.02 4.3E-07 52.8 8.6 87 148-260 59-150 (287)
233 PRK12723 flagellar biosynthesi 96.4 0.019 4.1E-07 58.2 9.5 89 169-259 173-264 (388)
234 PF13238 AAA_18: AAA domain; P 96.4 0.0031 6.7E-08 53.3 3.3 22 173-194 1-22 (129)
235 cd02025 PanK Pantothenate kina 96.4 0.02 4.4E-07 53.6 9.1 24 172-195 1-24 (220)
236 PF07728 AAA_5: AAA domain (dy 96.3 0.0082 1.8E-07 51.7 6.0 43 173-220 2-44 (139)
237 cd03115 SRP The signal recogni 96.3 0.018 3.8E-07 51.7 8.3 54 172-227 2-56 (173)
238 PF00006 ATP-synt_ab: ATP synt 96.3 0.015 3.3E-07 53.9 7.9 85 171-259 16-115 (215)
239 PRK05703 flhF flagellar biosyn 96.3 0.016 3.4E-07 59.8 8.8 86 170-258 221-308 (424)
240 PHA00729 NTP-binding motif con 96.3 0.0059 1.3E-07 56.6 5.1 36 160-195 7-42 (226)
241 cd01394 radB RadB. The archaea 96.3 0.019 4.2E-07 53.7 8.8 41 170-212 19-59 (218)
242 COG1102 Cmk Cytidylate kinase 96.3 0.0059 1.3E-07 52.6 4.6 46 172-230 2-47 (179)
243 TIGR02239 recomb_RAD51 DNA rep 96.3 0.021 4.6E-07 56.4 9.4 58 170-228 96-157 (316)
244 KOG0736 Peroxisome assembly fa 96.3 0.029 6.4E-07 59.9 10.6 95 147-261 670-776 (953)
245 TIGR02858 spore_III_AA stage I 96.3 0.026 5.6E-07 54.4 9.6 124 159-287 99-231 (270)
246 COG0464 SpoVK ATPases of the A 96.3 0.04 8.7E-07 58.5 12.1 130 169-318 275-425 (494)
247 PRK04301 radA DNA repair and r 96.3 0.028 6.1E-07 55.9 10.2 57 170-227 102-162 (317)
248 TIGR00554 panK_bact pantothena 96.3 0.026 5.5E-07 54.9 9.5 28 168-195 60-87 (290)
249 PRK09183 transposase/IS protei 96.3 0.02 4.4E-07 55.0 8.8 27 170-196 102-128 (259)
250 PLN03186 DNA repair protein RA 96.3 0.022 4.8E-07 56.8 9.3 58 170-228 123-184 (342)
251 cd01124 KaiC KaiC is a circadi 96.2 0.019 4.2E-07 52.1 8.2 38 172-211 1-38 (187)
252 cd01135 V_A-ATPase_B V/A-type 96.2 0.035 7.5E-07 53.1 10.0 92 169-260 68-177 (276)
253 PF00485 PRK: Phosphoribulokin 96.2 0.0043 9.4E-08 56.9 3.8 26 172-197 1-26 (194)
254 PRK13531 regulatory ATPase Rav 96.2 0.0076 1.6E-07 62.1 5.8 50 150-201 21-70 (498)
255 PTZ00035 Rad51 protein; Provis 96.2 0.036 7.7E-07 55.4 10.3 58 170-228 118-179 (337)
256 COG0563 Adk Adenylate kinase a 96.2 0.0092 2E-07 53.7 5.6 25 172-196 2-26 (178)
257 PF13671 AAA_33: AAA domain; P 96.2 0.0046 9.9E-08 53.5 3.6 24 172-195 1-24 (143)
258 cd02019 NK Nucleoside/nucleoti 96.2 0.0049 1.1E-07 45.9 3.2 23 172-194 1-23 (69)
259 PRK04328 hypothetical protein; 96.2 0.029 6.2E-07 53.7 9.2 42 169-212 22-63 (249)
260 PRK14723 flhF flagellar biosyn 96.1 0.046 1E-06 59.7 11.5 60 170-229 185-245 (767)
261 KOG0735 AAA+-type ATPase [Post 96.1 0.022 4.8E-07 60.2 8.6 158 170-346 431-616 (952)
262 cd00544 CobU Adenosylcobinamid 96.1 0.029 6.4E-07 50.0 8.4 80 173-258 2-82 (169)
263 PRK14721 flhF flagellar biosyn 96.1 0.043 9.4E-07 56.1 10.7 88 169-258 190-278 (420)
264 COG1703 ArgK Putative periplas 96.1 0.012 2.6E-07 56.1 6.0 59 159-217 38-98 (323)
265 TIGR00064 ftsY signal recognit 96.1 0.048 1E-06 52.8 10.5 89 169-259 71-164 (272)
266 PRK08233 hypothetical protein; 96.1 0.0054 1.2E-07 55.5 3.8 26 170-195 3-28 (182)
267 cd01131 PilT Pilus retraction 96.1 0.0098 2.1E-07 54.7 5.4 109 171-287 2-111 (198)
268 COG4608 AppF ABC-type oligopep 96.1 0.032 6.8E-07 52.8 8.6 117 169-289 38-174 (268)
269 PRK11034 clpA ATP-dependent Cl 96.0 0.021 4.5E-07 63.1 8.5 102 150-261 459-569 (758)
270 PRK06762 hypothetical protein; 96.0 0.0064 1.4E-07 54.2 3.8 25 170-194 2-26 (166)
271 PRK05439 pantothenate kinase; 96.0 0.05 1.1E-06 53.4 10.2 28 168-195 84-111 (311)
272 PRK05480 uridine/cytidine kina 96.0 0.0071 1.5E-07 56.2 4.2 27 168-194 4-30 (209)
273 PF01583 APS_kinase: Adenylyls 96.0 0.0095 2.1E-07 52.0 4.6 36 170-207 2-37 (156)
274 PF13481 AAA_25: AAA domain; P 96.0 0.027 5.9E-07 51.4 8.0 41 171-211 33-81 (193)
275 PRK07132 DNA polymerase III su 96.0 0.32 7E-06 47.6 15.8 162 159-345 6-184 (299)
276 COG2884 FtsE Predicted ATPase 96.0 0.033 7.2E-07 49.6 7.9 117 169-289 27-201 (223)
277 PF00154 RecA: recA bacterial 96.0 0.045 9.7E-07 53.8 9.7 84 170-260 53-142 (322)
278 PRK06995 flhF flagellar biosyn 96.0 0.041 9E-07 57.2 9.9 88 170-259 256-344 (484)
279 cd01125 repA Hexameric Replica 96.0 0.03 6.6E-07 53.2 8.3 114 172-285 3-159 (239)
280 PF03308 ArgK: ArgK protein; 95.9 0.015 3.2E-07 54.7 5.8 56 158-213 15-72 (266)
281 PRK08972 fliI flagellum-specif 95.9 0.025 5.4E-07 57.8 7.9 88 169-260 161-263 (444)
282 PRK10463 hydrogenase nickel in 95.9 0.093 2E-06 50.7 11.4 93 162-260 96-195 (290)
283 COG0468 RecA RecA/RadA recombi 95.9 0.063 1.4E-06 51.7 10.3 87 170-259 60-151 (279)
284 COG0194 Gmk Guanylate kinase [ 95.9 0.047 1E-06 48.6 8.6 25 170-194 4-28 (191)
285 PRK10865 protein disaggregatio 95.9 0.033 7.3E-07 62.8 9.7 106 149-261 568-682 (857)
286 PRK08927 fliI flagellum-specif 95.9 0.041 9E-07 56.4 9.4 88 169-260 157-259 (442)
287 COG4088 Predicted nucleotide k 95.9 0.0053 1.1E-07 55.1 2.6 27 171-197 2-28 (261)
288 TIGR00235 udk uridine kinase. 95.9 0.0085 1.8E-07 55.6 4.1 28 168-195 4-31 (207)
289 TIGR00416 sms DNA repair prote 95.9 0.031 6.7E-07 58.2 8.6 85 170-259 94-180 (454)
290 PF08433 KTI12: Chromatin asso 95.9 0.02 4.3E-07 55.2 6.6 26 171-196 2-27 (270)
291 PTZ00301 uridine kinase; Provi 95.9 0.0082 1.8E-07 55.6 3.8 26 170-195 3-28 (210)
292 TIGR03305 alt_F1F0_F1_bet alte 95.9 0.049 1.1E-06 56.0 9.7 91 169-260 137-243 (449)
293 PRK11823 DNA repair protein Ra 95.9 0.026 5.6E-07 58.7 7.8 85 170-259 80-166 (446)
294 cd01134 V_A-ATPase_A V/A-type 95.8 0.057 1.2E-06 53.3 9.6 87 169-259 156-264 (369)
295 TIGR01360 aden_kin_iso1 adenyl 95.8 0.0087 1.9E-07 54.5 3.8 27 169-195 2-28 (188)
296 PRK12597 F0F1 ATP synthase sub 95.8 0.05 1.1E-06 56.2 9.6 91 169-260 142-248 (461)
297 PRK03839 putative kinase; Prov 95.8 0.0084 1.8E-07 54.2 3.6 24 172-195 2-25 (180)
298 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.053 1.2E-06 52.1 9.2 40 170-211 36-75 (259)
299 TIGR02655 circ_KaiC circadian 95.8 0.049 1.1E-06 57.5 9.6 85 170-259 263-363 (484)
300 PRK00409 recombination and DNA 95.8 0.043 9.4E-07 61.1 9.6 179 168-366 325-526 (782)
301 TIGR01069 mutS2 MutS2 family p 95.8 0.011 2.4E-07 65.5 5.0 184 169-366 321-521 (771)
302 PRK06067 flagellar accessory p 95.8 0.056 1.2E-06 51.2 9.2 85 170-259 25-130 (234)
303 PRK08149 ATP synthase SpaL; Va 95.7 0.032 6.8E-07 57.1 7.7 88 169-260 150-252 (428)
304 COG3640 CooC CO dehydrogenase 95.7 0.023 5E-07 52.2 5.7 51 172-230 2-52 (255)
305 PF00910 RNA_helicase: RNA hel 95.7 0.0088 1.9E-07 49.0 2.9 23 173-195 1-23 (107)
306 COG0572 Udk Uridine kinase [Nu 95.6 0.012 2.6E-07 53.9 3.9 29 169-197 7-35 (218)
307 PF02562 PhoH: PhoH-like prote 95.6 0.015 3.3E-07 53.2 4.5 125 155-286 6-157 (205)
308 PRK13765 ATP-dependent proteas 95.6 0.026 5.5E-07 61.0 6.9 79 146-228 28-106 (637)
309 COG0465 HflB ATP-dependent Zn 95.6 0.16 3.4E-06 53.9 12.5 197 147-365 148-390 (596)
310 PF06745 KaiC: KaiC; InterPro 95.6 0.028 6.1E-07 52.9 6.5 86 170-259 19-125 (226)
311 KOG3347 Predicted nucleotide k 95.6 0.011 2.5E-07 50.1 3.3 37 170-213 7-43 (176)
312 CHL00206 ycf2 Ycf2; Provisiona 95.6 0.19 4E-06 59.7 13.9 27 170-196 1630-1656(2281)
313 PRK00625 shikimate kinase; Pro 95.6 0.011 2.4E-07 53.0 3.4 24 172-195 2-25 (173)
314 PF12775 AAA_7: P-loop contain 95.6 0.0093 2E-07 57.7 3.2 36 159-195 23-58 (272)
315 COG1428 Deoxynucleoside kinase 95.6 0.025 5.4E-07 51.3 5.6 27 170-196 4-30 (216)
316 PRK00131 aroK shikimate kinase 95.6 0.013 2.7E-07 52.6 3.9 26 170-195 4-29 (175)
317 KOG0738 AAA+-type ATPase [Post 95.6 0.067 1.5E-06 52.8 8.9 28 169-196 244-271 (491)
318 PF03205 MobB: Molybdopterin g 95.6 0.012 2.7E-07 50.6 3.6 39 171-210 1-39 (140)
319 KOG0652 26S proteasome regulat 95.6 0.51 1.1E-05 44.2 14.0 52 144-195 166-230 (424)
320 cd03238 ABC_UvrA The excision 95.6 0.042 9E-07 49.4 7.1 109 169-288 20-152 (176)
321 cd03214 ABC_Iron-Siderophores_ 95.5 0.084 1.8E-06 47.7 9.1 114 169-287 24-160 (180)
322 PRK04040 adenylate kinase; Pro 95.5 0.013 2.8E-07 53.4 3.7 25 171-195 3-27 (188)
323 TIGR02030 BchI-ChlI magnesium 95.5 0.023 4.9E-07 56.6 5.7 48 147-194 2-49 (337)
324 KOG0735 AAA+-type ATPase [Post 95.5 0.29 6.3E-06 52.2 13.8 147 171-341 702-871 (952)
325 PRK09280 F0F1 ATP synthase sub 95.5 0.096 2.1E-06 54.0 10.3 91 169-260 143-249 (463)
326 PRK09519 recA DNA recombinatio 95.5 0.056 1.2E-06 59.3 9.0 83 170-259 60-148 (790)
327 TIGR01041 ATP_syn_B_arch ATP s 95.5 0.091 2E-06 54.4 10.1 92 169-260 140-249 (458)
328 PF03215 Rad17: Rad17 cell cyc 95.5 0.022 4.7E-07 60.1 5.7 56 148-207 18-78 (519)
329 cd00227 CPT Chloramphenicol (C 95.5 0.014 3.1E-07 52.5 3.7 25 171-195 3-27 (175)
330 PRK01184 hypothetical protein; 95.4 0.06 1.3E-06 48.8 7.7 22 171-193 2-23 (184)
331 cd03216 ABC_Carb_Monos_I This 95.4 0.023 5E-07 50.5 4.8 111 169-287 25-144 (163)
332 cd03222 ABC_RNaseL_inhibitor T 95.4 0.064 1.4E-06 48.2 7.7 26 169-194 24-49 (177)
333 PF10236 DAP3: Mitochondrial r 95.4 1 2.2E-05 44.5 16.8 47 297-343 258-306 (309)
334 PTZ00185 ATPase alpha subunit; 95.4 0.15 3.2E-06 53.0 11.0 92 169-260 188-300 (574)
335 TIGR00750 lao LAO/AO transport 95.4 0.064 1.4E-06 52.8 8.4 31 167-197 31-61 (300)
336 PRK14531 adenylate kinase; Pro 95.4 0.053 1.2E-06 49.2 7.2 25 171-195 3-27 (183)
337 PRK06851 hypothetical protein; 95.4 0.3 6.6E-06 49.0 13.0 43 167-210 211-253 (367)
338 TIGR00150 HI0065_YjeE ATPase, 95.4 0.039 8.4E-07 46.8 5.8 28 170-197 22-49 (133)
339 PF12061 DUF3542: Protein of u 95.4 0.036 7.9E-07 52.8 6.1 62 32-93 314-375 (402)
340 cd02023 UMPK Uridine monophosp 95.4 0.012 2.7E-07 54.1 3.0 23 172-194 1-23 (198)
341 CHL00081 chlI Mg-protoporyphyr 95.4 0.022 4.7E-07 56.8 4.9 50 146-195 14-63 (350)
342 TIGR02322 phosphon_PhnN phosph 95.4 0.015 3.3E-07 52.5 3.6 25 171-195 2-26 (179)
343 PRK09435 membrane ATPase/prote 95.3 0.078 1.7E-06 52.6 8.7 39 159-197 43-83 (332)
344 TIGR00390 hslU ATP-dependent p 95.3 0.056 1.2E-06 54.7 7.7 47 150-196 13-73 (441)
345 PTZ00088 adenylate kinase 1; P 95.3 0.021 4.6E-07 53.6 4.5 23 173-195 9-31 (229)
346 cd01132 F1_ATPase_alpha F1 ATP 95.3 0.12 2.6E-06 49.5 9.6 95 169-267 68-180 (274)
347 PRK00889 adenylylsulfate kinas 95.3 0.02 4.4E-07 51.5 4.2 28 169-196 3-30 (175)
348 PRK12678 transcription termina 95.3 0.071 1.5E-06 55.9 8.5 99 161-260 406-514 (672)
349 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.3 0.048 1E-06 47.3 6.4 26 169-194 25-50 (144)
350 PF13245 AAA_19: Part of AAA d 95.3 0.04 8.7E-07 41.8 5.1 25 169-193 9-33 (76)
351 cd02024 NRK1 Nicotinamide ribo 95.3 0.014 3.1E-07 52.9 3.1 23 172-194 1-23 (187)
352 TIGR03575 selen_PSTK_euk L-ser 95.3 0.051 1.1E-06 54.0 7.3 23 173-195 2-24 (340)
353 PF00625 Guanylate_kin: Guanyl 95.3 0.028 6.1E-07 51.0 5.1 36 170-207 2-37 (183)
354 cd02021 GntK Gluconate kinase 95.3 0.014 3E-07 51.0 3.0 23 172-194 1-23 (150)
355 PRK05800 cobU adenosylcobinami 95.3 0.059 1.3E-06 48.1 7.0 80 172-258 3-85 (170)
356 PRK06217 hypothetical protein; 95.3 0.016 3.4E-07 52.7 3.4 34 172-206 3-38 (183)
357 PRK13407 bchI magnesium chelat 95.3 0.025 5.4E-07 56.2 5.1 49 146-194 5-53 (334)
358 cd03247 ABCC_cytochrome_bd The 95.3 0.074 1.6E-06 48.0 7.8 25 170-194 28-52 (178)
359 TIGR01040 V-ATPase_V1_B V-type 95.3 0.07 1.5E-06 54.7 8.2 92 169-260 140-258 (466)
360 PRK06936 type III secretion sy 95.2 0.11 2.5E-06 53.2 9.8 88 169-260 161-263 (439)
361 PRK06002 fliI flagellum-specif 95.2 0.048 1E-06 56.0 7.0 88 170-260 165-265 (450)
362 TIGR01039 atpD ATP synthase, F 95.2 0.14 2.9E-06 52.8 10.3 98 169-267 142-256 (461)
363 COG0003 ArsA Predicted ATPase 95.2 0.039 8.4E-07 54.4 6.1 49 170-220 2-50 (322)
364 PF06309 Torsin: Torsin; Inte 95.2 0.045 9.8E-07 45.6 5.5 44 151-194 27-77 (127)
365 cd02020 CMPK Cytidine monophos 95.2 0.016 3.6E-07 50.2 3.2 24 172-195 1-24 (147)
366 PRK10751 molybdopterin-guanine 95.2 0.022 4.8E-07 50.7 4.0 28 169-196 5-32 (173)
367 PLN02165 adenylate isopentenyl 95.2 0.025 5.3E-07 55.7 4.6 30 166-195 39-68 (334)
368 COG0467 RAD55 RecA-superfamily 95.2 0.029 6.3E-07 54.1 5.1 43 168-212 21-63 (260)
369 PF07726 AAA_3: ATPase family 95.2 0.014 3E-07 48.7 2.5 24 173-196 2-25 (131)
370 COG1121 ZnuC ABC-type Mn/Zn tr 95.2 0.062 1.3E-06 50.7 7.0 118 170-288 30-202 (254)
371 KOG0727 26S proteasome regulat 95.2 0.78 1.7E-05 42.7 13.8 73 168-260 187-259 (408)
372 TIGR00073 hypB hydrogenase acc 95.2 0.024 5.1E-07 52.6 4.2 33 163-195 15-47 (207)
373 cd03223 ABCD_peroxisomal_ALDP 95.1 0.096 2.1E-06 46.6 8.0 27 169-195 26-52 (166)
374 PRK04196 V-type ATP synthase s 95.1 0.12 2.6E-06 53.7 9.6 92 169-260 142-251 (460)
375 PRK00279 adk adenylate kinase; 95.1 0.1 2.3E-06 48.6 8.5 24 172-195 2-25 (215)
376 PF09848 DUF2075: Uncharacteri 95.1 0.092 2E-06 53.1 8.7 41 171-211 2-42 (352)
377 TIGR03881 KaiC_arch_4 KaiC dom 95.1 0.22 4.7E-06 46.9 10.8 40 170-211 20-59 (229)
378 cd03246 ABCC_Protease_Secretio 95.1 0.083 1.8E-06 47.4 7.5 25 170-194 28-52 (173)
379 COG0529 CysC Adenylylsulfate k 95.1 0.04 8.7E-07 48.4 5.1 33 165-197 18-50 (197)
380 PRK05973 replicative DNA helic 95.1 0.16 3.4E-06 47.9 9.5 48 170-221 64-111 (237)
381 COG3854 SpoIIIAA ncharacterize 95.1 0.064 1.4E-06 49.2 6.5 118 161-286 128-254 (308)
382 PRK14527 adenylate kinase; Pro 95.1 0.024 5.2E-07 51.8 4.0 28 169-196 5-32 (191)
383 PRK13947 shikimate kinase; Pro 95.1 0.02 4.3E-07 51.2 3.4 25 172-196 3-27 (171)
384 PF13086 AAA_11: AAA domain; P 95.1 0.05 1.1E-06 51.1 6.3 23 172-194 19-41 (236)
385 cd02028 UMPK_like Uridine mono 95.0 0.019 4.2E-07 51.8 3.2 24 172-195 1-24 (179)
386 COG4240 Predicted kinase [Gene 95.0 0.16 3.5E-06 46.5 8.9 82 167-249 47-133 (300)
387 TIGR00764 lon_rel lon-related 95.0 0.064 1.4E-06 58.0 7.6 76 148-227 17-92 (608)
388 PRK13949 shikimate kinase; Pro 95.0 0.021 4.6E-07 51.0 3.4 24 172-195 3-26 (169)
389 cd00561 CobA_CobO_BtuR ATP:cor 95.0 0.06 1.3E-06 47.2 6.1 114 171-286 3-139 (159)
390 PRK14529 adenylate kinase; Pro 95.0 0.08 1.7E-06 49.4 7.3 83 173-260 3-87 (223)
391 PRK14530 adenylate kinase; Pro 95.0 0.023 4.9E-07 53.1 3.6 25 171-195 4-28 (215)
392 TIGR01650 PD_CobS cobaltochela 95.0 0.09 2E-06 51.7 7.9 61 149-216 45-105 (327)
393 cd02029 PRK_like Phosphoribulo 95.0 0.12 2.6E-06 49.2 8.3 25 172-196 1-25 (277)
394 TIGR03263 guanyl_kin guanylate 95.0 0.02 4.2E-07 51.8 3.1 24 171-194 2-25 (180)
395 PF03266 NTPase_1: NTPase; In 95.0 0.036 7.9E-07 49.4 4.7 23 173-195 2-24 (168)
396 COG1936 Predicted nucleotide k 95.0 0.02 4.4E-07 50.1 2.9 20 172-191 2-21 (180)
397 PF08298 AAA_PrkA: PrkA AAA do 94.9 0.25 5.4E-06 48.8 10.7 93 149-246 61-166 (358)
398 COG0714 MoxR-like ATPases [Gen 94.9 0.068 1.5E-06 53.5 7.1 64 151-221 26-89 (329)
399 KOG1532 GTPase XAB1, interacts 94.9 0.029 6.4E-07 52.5 4.1 61 169-231 18-89 (366)
400 PRK05688 fliI flagellum-specif 94.9 0.17 3.7E-06 52.1 9.9 88 169-260 167-269 (451)
401 cd01136 ATPase_flagellum-secre 94.9 0.16 3.5E-06 50.1 9.5 88 169-260 68-170 (326)
402 CHL00060 atpB ATP synthase CF1 94.9 0.11 2.3E-06 54.0 8.5 91 169-260 160-273 (494)
403 PRK07594 type III secretion sy 94.9 0.077 1.7E-06 54.4 7.5 88 169-260 154-256 (433)
404 KOG1051 Chaperone HSP104 and r 94.9 0.25 5.4E-06 54.9 11.7 102 151-262 564-673 (898)
405 PRK05922 type III secretion sy 94.9 0.12 2.6E-06 53.0 8.8 88 169-260 156-258 (434)
406 PRK12339 2-phosphoglycerate ki 94.9 0.028 6E-07 51.6 3.8 26 170-195 3-28 (197)
407 PF02374 ArsA_ATPase: Anion-tr 94.9 0.044 9.5E-07 54.0 5.5 46 171-218 2-47 (305)
408 PRK10416 signal recognition pa 94.9 0.22 4.7E-06 49.4 10.4 28 169-196 113-140 (318)
409 PF08477 Miro: Miro-like prote 94.9 0.026 5.5E-07 46.9 3.3 24 173-196 2-25 (119)
410 TIGR00708 cobA cob(I)alamin ad 94.9 0.14 3E-06 45.5 8.0 117 170-286 5-141 (173)
411 PRK05342 clpX ATP-dependent pr 94.9 0.057 1.2E-06 55.4 6.4 46 150-195 72-133 (412)
412 PRK00300 gmk guanylate kinase; 94.8 0.027 5.9E-07 52.1 3.8 27 169-195 4-30 (205)
413 PRK14737 gmk guanylate kinase; 94.8 0.027 5.8E-07 51.2 3.6 26 169-194 3-28 (186)
414 PF03193 DUF258: Protein of un 94.8 0.046 1E-06 48.0 4.9 34 158-194 26-59 (161)
415 TIGR02655 circ_KaiC circadian 94.8 0.18 3.8E-06 53.3 10.1 86 169-258 20-129 (484)
416 PRK03846 adenylylsulfate kinas 94.8 0.046 9.9E-07 50.3 5.1 29 167-195 21-49 (198)
417 TIGR03496 FliI_clade1 flagella 94.8 0.12 2.7E-06 52.8 8.6 88 169-260 136-238 (411)
418 TIGR01313 therm_gnt_kin carboh 94.8 0.022 4.7E-07 50.6 2.8 23 173-195 1-23 (163)
419 PRK15453 phosphoribulokinase; 94.8 0.21 4.6E-06 47.9 9.5 27 169-195 4-30 (290)
420 cd00464 SK Shikimate kinase (S 94.8 0.028 6E-07 49.2 3.4 23 173-195 2-24 (154)
421 COG1763 MobB Molybdopterin-gua 94.7 0.029 6.3E-07 49.2 3.4 30 170-199 2-31 (161)
422 PRK13975 thymidylate kinase; P 94.7 0.031 6.7E-07 51.3 3.7 26 171-196 3-28 (196)
423 cd01878 HflX HflX subfamily. 94.7 0.1 2.3E-06 48.1 7.3 27 168-194 39-65 (204)
424 TIGR00176 mobB molybdopterin-g 94.7 0.029 6.3E-07 49.3 3.4 26 172-197 1-26 (155)
425 cd00071 GMPK Guanosine monopho 94.7 0.025 5.4E-07 48.6 2.9 24 172-195 1-24 (137)
426 KOG0651 26S proteasome regulat 94.7 0.088 1.9E-06 50.5 6.6 28 170-197 166-193 (388)
427 cd02027 APSK Adenosine 5'-phos 94.7 0.028 6.1E-07 49.1 3.2 24 172-195 1-24 (149)
428 COG1224 TIP49 DNA helicase TIP 94.7 0.074 1.6E-06 51.9 6.2 54 148-201 38-96 (450)
429 PRK06731 flhF flagellar biosyn 94.6 0.15 3.4E-06 49.0 8.4 90 169-260 74-165 (270)
430 COG3598 RepA RecA-family ATPas 94.6 0.13 2.9E-06 49.5 7.7 59 172-230 91-158 (402)
431 PRK05917 DNA polymerase III su 94.6 0.93 2E-05 44.0 13.7 36 159-194 7-43 (290)
432 PLN02200 adenylate kinase fami 94.6 0.036 7.7E-07 52.4 3.9 27 169-195 42-68 (234)
433 COG2019 AdkA Archaeal adenylat 94.6 0.038 8.1E-07 48.0 3.6 25 170-194 4-28 (189)
434 PRK07196 fliI flagellum-specif 94.6 0.11 2.4E-06 53.2 7.7 96 168-267 153-264 (434)
435 TIGR01420 pilT_fam pilus retra 94.6 0.083 1.8E-06 53.1 6.7 112 169-287 121-232 (343)
436 PF00158 Sigma54_activat: Sigm 94.6 0.11 2.4E-06 46.3 6.8 43 152-195 2-47 (168)
437 PRK08472 fliI flagellum-specif 94.6 0.13 2.8E-06 52.8 8.0 86 168-260 155-257 (434)
438 PRK10078 ribose 1,5-bisphospho 94.5 0.03 6.4E-07 51.0 3.1 24 171-194 3-26 (186)
439 PRK05057 aroK shikimate kinase 94.5 0.038 8.2E-07 49.6 3.7 26 170-195 4-29 (172)
440 TIGR03324 alt_F1F0_F1_al alter 94.5 0.24 5.2E-06 51.5 9.9 88 169-260 161-265 (497)
441 PF13521 AAA_28: AAA domain; P 94.5 0.03 6.5E-07 49.7 3.0 21 173-193 2-22 (163)
442 PRK00698 tmk thymidylate kinas 94.5 0.1 2.3E-06 48.0 6.7 27 171-197 4-30 (205)
443 PRK09099 type III secretion sy 94.5 0.12 2.6E-06 53.2 7.6 88 169-260 162-264 (441)
444 cd00984 DnaB_C DnaB helicase C 94.5 0.35 7.6E-06 45.9 10.5 51 170-223 13-63 (242)
445 PRK09302 circadian clock prote 94.4 0.26 5.6E-06 52.6 10.5 85 170-259 273-373 (509)
446 PRK15429 formate hydrogenlyase 94.4 0.28 6E-06 54.4 11.0 48 148-195 375-424 (686)
447 TIGR02868 CydC thiol reductant 94.4 0.18 3.9E-06 54.1 9.3 26 169-194 360-385 (529)
448 PF12799 LRR_4: Leucine Rich r 94.4 0.04 8.7E-07 36.8 2.8 33 503-535 2-35 (44)
449 cd00820 PEPCK_HprK Phosphoenol 94.4 0.039 8.3E-07 44.8 3.2 22 170-191 15-36 (107)
450 PRK14738 gmk guanylate kinase; 94.4 0.038 8.2E-07 51.2 3.6 25 169-193 12-36 (206)
451 cd01672 TMPK Thymidine monopho 94.4 0.11 2.4E-06 47.5 6.8 25 172-196 2-26 (200)
452 COG1126 GlnQ ABC-type polar am 94.4 0.034 7.4E-07 50.6 3.1 36 169-207 27-62 (240)
453 TIGR03880 KaiC_arch_3 KaiC dom 94.4 0.24 5.3E-06 46.4 9.1 40 170-211 16-55 (224)
454 COG0488 Uup ATPase components 94.4 0.81 1.8E-05 48.5 13.7 129 170-301 348-510 (530)
455 COG0237 CoaE Dephospho-CoA kin 94.4 0.15 3.2E-06 46.8 7.3 23 170-192 2-24 (201)
456 PF03029 ATP_bind_1: Conserved 94.4 0.038 8.1E-07 52.3 3.5 34 175-210 1-34 (238)
457 TIGR03498 FliI_clade3 flagella 94.4 0.2 4.4E-06 51.3 8.9 88 169-260 139-241 (418)
458 PRK14532 adenylate kinase; Pro 94.4 0.037 8E-07 50.4 3.3 23 173-195 3-25 (188)
459 PRK13948 shikimate kinase; Pro 94.3 0.049 1.1E-06 49.2 4.0 27 169-195 9-35 (182)
460 TIGR00041 DTMP_kinase thymidyl 94.3 0.12 2.7E-06 47.2 6.8 27 171-197 4-30 (195)
461 PF06068 TIP49: TIP49 C-termin 94.3 0.075 1.6E-06 52.6 5.4 53 148-200 23-80 (398)
462 cd01428 ADK Adenylate kinase ( 94.3 0.038 8.3E-07 50.5 3.4 23 173-195 2-24 (194)
463 cd01122 GP4d_helicase GP4d_hel 94.3 0.4 8.6E-06 46.4 10.7 52 170-224 30-81 (271)
464 cd03116 MobB Molybdenum is an 94.3 0.063 1.4E-06 47.3 4.6 27 171-197 2-28 (159)
465 TIGR03574 selen_PSTK L-seryl-t 94.3 0.034 7.5E-07 53.2 3.2 25 172-196 1-25 (249)
466 PRK13946 shikimate kinase; Pro 94.3 0.042 9.1E-07 49.9 3.5 27 170-196 10-36 (184)
467 PRK04182 cytidylate kinase; Pr 94.3 0.043 9.4E-07 49.4 3.6 24 172-195 2-25 (180)
468 COG1124 DppF ABC-type dipeptid 94.3 0.039 8.4E-07 51.2 3.2 26 169-194 32-57 (252)
469 KOG0736 Peroxisome assembly fa 94.2 0.65 1.4E-05 50.1 12.4 45 151-195 403-456 (953)
470 PRK05201 hslU ATP-dependent pr 94.2 0.11 2.5E-06 52.6 6.6 47 150-196 16-76 (443)
471 TIGR02173 cyt_kin_arch cytidyl 94.2 0.047 1E-06 48.7 3.6 24 172-195 2-25 (171)
472 CHL00059 atpA ATP synthase CF1 94.2 0.26 5.6E-06 51.0 9.3 88 169-260 140-244 (485)
473 cd01983 Fer4_NifH The Fer4_Nif 94.2 0.049 1.1E-06 43.1 3.3 25 172-196 1-25 (99)
474 PRK06793 fliI flagellum-specif 94.2 0.2 4.3E-06 51.4 8.4 89 169-261 155-258 (432)
475 PF12780 AAA_8: P-loop contain 94.1 0.25 5.3E-06 47.6 8.6 80 158-259 20-99 (268)
476 TIGR01287 nifH nitrogenase iro 94.1 0.044 9.6E-07 53.3 3.6 37 171-209 1-37 (275)
477 PRK13236 nitrogenase reductase 94.1 0.054 1.2E-06 53.3 4.2 30 167-196 3-32 (296)
478 PF13604 AAA_30: AAA domain; P 94.1 0.11 2.3E-06 47.7 5.9 107 168-287 16-133 (196)
479 PRK13695 putative NTPase; Prov 94.1 0.071 1.5E-06 47.9 4.6 25 172-196 2-26 (174)
480 cd02117 NifH_like This family 94.1 0.05 1.1E-06 50.6 3.7 27 171-197 1-27 (212)
481 PRK07721 fliI flagellum-specif 94.1 0.18 4E-06 52.0 8.0 90 168-260 156-259 (438)
482 PRK09825 idnK D-gluconate kina 94.0 0.052 1.1E-06 48.8 3.6 25 171-195 4-28 (176)
483 PRK14493 putative bifunctional 94.0 0.066 1.4E-06 51.7 4.4 35 171-208 2-36 (274)
484 COG4778 PhnL ABC-type phosphon 94.0 0.07 1.5E-06 46.6 4.0 36 170-208 37-72 (235)
485 TIGR03497 FliI_clade2 flagella 94.0 0.34 7.4E-06 49.7 9.7 88 169-260 136-238 (413)
486 TIGR00962 atpA proton transloc 94.0 0.28 6E-06 51.5 9.2 88 169-260 160-264 (501)
487 PRK06761 hypothetical protein; 94.0 0.052 1.1E-06 52.4 3.6 26 171-196 4-29 (282)
488 PF01078 Mg_chelatase: Magnesi 93.9 0.1 2.2E-06 47.7 5.2 44 148-193 2-45 (206)
489 PRK07960 fliI flagellum-specif 93.9 0.14 3E-06 52.7 6.6 88 169-260 174-276 (455)
490 PF02367 UPF0079: Uncharacteri 93.9 0.12 2.7E-06 43.1 5.2 28 170-197 15-42 (123)
491 PRK13768 GTPase; Provisional 93.9 0.06 1.3E-06 51.6 3.8 26 171-196 3-28 (253)
492 cd02040 NifH NifH gene encodes 93.9 0.11 2.3E-06 50.4 5.7 41 171-213 2-42 (270)
493 PRK03731 aroL shikimate kinase 93.9 0.058 1.3E-06 48.2 3.6 25 171-195 3-27 (171)
494 TIGR01351 adk adenylate kinase 93.8 0.053 1.2E-06 50.4 3.4 23 173-195 2-24 (210)
495 KOG0726 26S proteasome regulat 93.8 0.32 7E-06 46.2 8.3 92 147-259 183-288 (440)
496 PRK06820 type III secretion sy 93.8 0.34 7.4E-06 49.9 9.4 85 169-260 162-264 (440)
497 PHA02530 pseT polynucleotide k 93.8 0.055 1.2E-06 53.3 3.7 24 171-194 3-26 (300)
498 PRK13230 nitrogenase reductase 93.8 0.059 1.3E-06 52.5 3.8 27 171-197 2-28 (279)
499 cd01129 PulE-GspE PulE/GspE Th 93.8 0.14 3E-06 49.4 6.1 91 165-265 75-165 (264)
500 PRK08356 hypothetical protein; 93.7 0.064 1.4E-06 49.2 3.6 22 170-191 5-26 (195)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-70 Score=592.95 Aligned_cols=495 Identities=28% Similarity=0.403 Sum_probs=402.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhccccccc--------c--------
Q 009411 32 SNLEKLKNEVQKLRGAKESVQQKIDDAKRSGEDIEQRVENWLITADEILDAAARIIEGTEDTT--------N-------- 95 (535)
Q Consensus 32 ~~~~~l~~~l~~L~~~l~~i~~~l~~a~~~~~~~~~~v~~wl~~l~~~~~d~ed~ld~~~~~~--------~-------- 95 (535)
..+.+.++.+..|+..|..++.++++++.+++. ...+..|...++++.|++||.++.+.... .
T Consensus 21 ~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~ 99 (889)
T KOG4658|consen 21 ECLDGKDNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQ 99 (889)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHH
Confidence 345556778899999999999999999988654 67889999999999999999988654321 0
Q ss_pred ccCCChhHHhHHHHHHHHHHHHHHHHHHHc------CCCCccccc-cCCCcccccccCCcccccccHHHHHHHHHHhcCC
Q 009411 96 RLCPNLNTRYQVSKKAAREVKAAAELLQQE------GRFDKVSYR-TVPEDVWLTSIKGYEAFESRMSTLNDVINALKNP 168 (535)
Q Consensus 96 ~~~~~~~~r~~~~~~i~~~~~~l~~i~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~gR~~~~~~l~~~L~~~ 168 (535)
+.| -...+++.+..+..+.+++..+.+.. ..|..+... .+.......+...... +|.+..++++.+.|.++
T Consensus 100 ~~c-~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d 177 (889)
T KOG4658|consen 100 RLC-LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMED 177 (889)
T ss_pred HHh-hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccC
Confidence 011 01334444444444444444443333 234333221 1111122222223333 99999999999999988
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc-cccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCC---chHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK-ADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEES---ESGRARKLCER 244 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~-~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~l~~~ 244 (535)
+..+++|+||||+||||||+.++|+.. ++.+|+.++||.||+.++...++.+|+..++....... ..+.+..+.+.
T Consensus 178 ~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~ 257 (889)
T KOG4658|consen 178 DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNL 257 (889)
T ss_pred CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHH
Confidence 889999999999999999999999988 89999999999999999999999999999987544432 24566677777
Q ss_pred HhcCCcEEEEEeCCCCcccccccCCCCC--CCCeEEEEeecCchhhhcccCCcceEecCCCCHHHHHHHHHHHhCCC--C
Q 009411 245 LKKEKKILVILDDIWTNLDLENVGIPFG--VRGCRVLMTARSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDK--I 320 (535)
Q Consensus 245 l~~~~~~LlVlDdv~~~~~~~~~~~~~~--~~gs~ilvTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~--~ 320 (535)
|. ++||||||||||+..+|+.++.|++ .+||||++|||+..|+...++....++++.|+++|||+||++.++.. .
T Consensus 258 L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~ 336 (889)
T KOG4658|consen 258 LE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLG 336 (889)
T ss_pred hc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccc
Confidence 77 6899999999999999999998887 57899999999999987668888899999999999999999999843 3
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHHhhcC-CHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHhhhcCCCCCchHHH
Q 009411 321 ENNDLKSLAMNIVKACRGLPIAIVTIARALRNK-NTFEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGEELKST 399 (535)
Q Consensus 321 ~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c 399 (535)
..+.++++|++++++|+|+|||++++|+.|+.+ +..+|.++.+.+.+....+.++..+.++.++.+||+.||++ +|.|
T Consensus 337 ~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~C 415 (889)
T KOG4658|consen 337 SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSC 415 (889)
T ss_pred ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHH
Confidence 345589999999999999999999999999987 78899999999988866666666889999999999999976 9999
Q ss_pred HHHhhccCCCCCCCHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHHccccccCC---CCCcEEecHHHHHHHHHHh
Q 009411 400 FLLCCLMDFIENPSVLYLLSYGMGLGLFKGTHTMEEARDRALTLVDKLKNSYLLLDDP---ESETFSEHDVVRHVAMSIA 476 (535)
Q Consensus 400 ~~~ls~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~---~~~~~~mH~lv~~~a~~~~ 476 (535)
|+|||+||+|+.|+.+.|+.+|+||||+.+....+.+++.+++++.+|++++|++... +..+|.|||+||++|.+++
T Consensus 416 FLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ia 495 (889)
T KOG4658|consen 416 FLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIA 495 (889)
T ss_pred HHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHh
Confidence 9999999999999999999999999999886667778888999999999999998654 4478999999999999999
Q ss_pred c-----cccceeeecCccCCCCCcccccccccceEEEeccCcccccCCccCCCCCceeecccC
Q 009411 477 S-----RDQHVIATNNIEAPPTESLDKDTLKICTAISLHNCKIGELVEGFGNLSSSLCRCFED 534 (535)
Q Consensus 477 ~-----~e~~~~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~~~~~~~~~~lr~L~~~~~ 534 (535)
+ +++++...+..+. +.+....+..+||+|+++|.+..++.+..|++|+||+++++
T Consensus 496 s~~~~~~e~~iv~~~~~~~---~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n 555 (889)
T KOG4658|consen 496 SDFGKQEENQIVSDGVGLS---EIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRN 555 (889)
T ss_pred ccccccccceEEECCcCcc---ccccccchhheeEEEEeccchhhccCCCCCCccceEEEeec
Confidence 9 6663333322333 34555667899999999999999999999999999999986
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.6e-45 Score=360.04 Aligned_cols=274 Identities=31% Similarity=0.477 Sum_probs=218.5
Q ss_pred cHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCcc-
Q 009411 154 RMSTLNDVINALKN--PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY- 230 (535)
Q Consensus 154 R~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~- 230 (535)
|+.++++|.++|.+ ++.++|+|+||||+||||||.+++++...+++|+.++|+.++...+...++..|+..++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999997 789999999999999999999999987777889999999999999999999999999988743
Q ss_pred ---CCCchHHHHHHHHHHhcCCcEEEEEeCCCCcccccccCCCCC--CCCeEEEEeecCchhhhcccCCcceEecCCCCH
Q 009411 231 ---EESESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFG--VRGCRVLMTARSQDVLSSKMDCQNNFLIGVLNE 305 (535)
Q Consensus 231 ---~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~~~~~~--~~gs~ilvTtR~~~v~~~~~~~~~~~~l~~L~~ 305 (535)
..........+.+.+. ++++||||||||+...|+.+..+++ ..|++||||||+..++.........|++++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2344556677777776 5799999999999999987755443 568999999999988643333367999999999
Q ss_pred HHHHHHHHHHhCCCC--CCchhHHHHHHHHHHcCCChHHHHHHHHHhhcC-CHHHHHHHHHHhcCCCCCCCCcchHHHHH
Q 009411 306 SEARDLFKKLVGDKI--ENNDLKSLAMNIVKACRGLPIAIVTIARALRNK-NTFEWKSALRELTRPSSGSFSGVAAEAYK 382 (535)
Q Consensus 306 ~ea~~Lf~~~~~~~~--~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~v~~ 382 (535)
++|++||.+.++... ..+.+.+.+++|+++|+|+||||+++|++|+.+ +..+|..+++++...... ..+....+..
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 999999999997433 344556689999999999999999999999744 778899999887655432 2224788999
Q ss_pred HHHhhhcCCCCCchHHHHHHhhccCCCCCCCHHHHHHHhhhcccccCC
Q 009411 383 TSELSYNHLEGEELKSTFLLCCLMDFIENPSVLYLLSYGMGLGLFKGT 430 (535)
Q Consensus 383 ~l~~sy~~L~~~~~k~c~~~ls~fp~~~~i~~~~Li~~W~a~g~i~~~ 430 (535)
++.+||+.||++ +|.||+|||+||+++.|+.+.|+++|+++||++..
T Consensus 239 ~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 999999999997 99999999999999999999999999999998753
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.2e-39 Score=373.17 Aligned_cols=304 Identities=17% Similarity=0.246 Sum_probs=234.5
Q ss_pred CcccccccHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEe---CCC----------
Q 009411 147 GYEAFESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV---SQR---------- 211 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v---~~~---------- 211 (535)
...+++|++..++++..+|. .+++++|+|+||||+||||||+.+|+... .+|++.+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhccccccc
Confidence 45679999999999998876 56789999999999999999999999876 45888887742 111
Q ss_pred -CC-HHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcccccccCCCCC--CCCeEEEEeecCchh
Q 009411 212 -PD-VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFG--VRGCRVLMTARSQDV 287 (535)
Q Consensus 212 -~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~~~~~~--~~gs~ilvTtR~~~v 287 (535)
++ ...+..+++..+........ .....+.+.+. ++|+||||||||+..+|+.+..... ++||+||||||+..+
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~--~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~v 336 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKI--YHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHF 336 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCccc--CCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHH
Confidence 01 12334444444322211110 11234556665 6899999999999988888754333 689999999999998
Q ss_pred hhcccCCcceEecCCCCHHHHHHHHHHHhCCCC-CCchhHHHHHHHHHHcCCChHHHHHHHHHhhcCCHHHHHHHHHHhc
Q 009411 288 LSSKMDCQNNFLIGVLNESEARDLFKKLVGDKI-ENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEWKSALRELT 366 (535)
Q Consensus 288 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~~~~~~~w~~~l~~l~ 366 (535)
+. ..+....|+++.|+.++||+||+++|+... +++++.+++++|+++|+|+|||++++|++|++++..+|..+++++.
T Consensus 337 l~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~ 415 (1153)
T PLN03210 337 LR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLR 415 (1153)
T ss_pred HH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 64 344567999999999999999999998543 4556889999999999999999999999999999999999999987
Q ss_pred CCCCCCCCcchHHHHHHHHhhhcCCCCCchHHHHHHhhccCCCCCCCHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHH
Q 009411 367 RPSSGSFSGVAAEAYKTSELSYNHLEGEELKSTFLLCCLMDFIENPSVLYLLSYGMGLGLFKGTHTMEEARDRALTLVDK 446 (535)
Q Consensus 367 ~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~ls~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~l~~ 446 (535)
... ...+..+|++||+.|+++..|.||+++|+|+.+..++ .+..|++.+.... ...++.
T Consensus 416 ~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~ 474 (1153)
T PLN03210 416 NGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKN 474 (1153)
T ss_pred hCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHH
Confidence 532 4578999999999998744899999999998665443 3556776654321 123788
Q ss_pred HHHccccccCCCCCcEEecHHHHHHHHHHhccc
Q 009411 447 LKNSYLLLDDPESETFSEHDVVRHVAMSIASRD 479 (535)
Q Consensus 447 L~~~sll~~~~~~~~~~mH~lv~~~a~~~~~~e 479 (535)
|+++||++.. .++|.|||++|++++.++.++
T Consensus 475 L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~ 505 (1153)
T PLN03210 475 LVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQ 505 (1153)
T ss_pred HHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhh
Confidence 9999999764 457999999999999998765
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.63 E-value=3.1e-14 Score=162.32 Aligned_cols=291 Identities=15% Similarity=0.183 Sum_probs=182.2
Q ss_pred CcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC-CCHHHHHHHHHHHh
Q 009411 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-PDVKKIQGQIADKL 225 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l 225 (535)
....++-|...++.+-+ ....+++.|+|++|.||||++..+.+.. ..++|+++... .+...+...++..+
T Consensus 12 ~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~------~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK------NNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred CccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC------CCeEEEecCcccCCHHHHHHHHHHHH
Confidence 34566777766655432 2356899999999999999999988532 25899999644 45566667777666
Q ss_pred CCCccC--------------CCchHHHHHHHHHHhc-CCcEEEEEeCCCCccc------ccccCCCCCCCCeEEEEeecC
Q 009411 226 GLKFYE--------------ESESGRARKLCERLKK-EKKILVILDDIWTNLD------LENVGIPFGVRGCRVLMTARS 284 (535)
Q Consensus 226 ~~~~~~--------------~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~------~~~~~~~~~~~gs~ilvTtR~ 284 (535)
+..... .........+...+.. +.+++|||||+...+. +..+ ......+.++|||||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l-~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFF-LRHQPENLTLVVLSRN 161 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHH-HHhCCCCeEEEEEeCC
Confidence 421111 1111233445555543 6789999999976431 2222 2212457789899998
Q ss_pred chhhh--cccCCcceEecC----CCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhhcCCHHHH
Q 009411 285 QDVLS--SKMDCQNNFLIG----VLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEW 358 (535)
Q Consensus 285 ~~v~~--~~~~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~~~~~~~w 358 (535)
..-.. ..........++ +|+.+|+.+||....+...+. +.+..|.+.|+|+|+++..++..+...... .
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~----~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~ 236 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEA----AESSRLCDDVEGWATALQLIALSARQNNSS-L 236 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCH----HHHHHHHHHhCChHHHHHHHHHHHhhCCCc-h
Confidence 53211 000112244555 899999999999877654322 347789999999999999998877643210 0
Q ss_pred HHHHHHhcCCCCCCCCcchHHHHHHHH-hhhcCCCCCchHHHHHHhhccCCCCCCCHHHHHHHhhhcccccCCCcHHHHH
Q 009411 359 KSALRELTRPSSGSFSGVAAEAYKTSE-LSYNHLEGEELKSTFLLCCLMDFIENPSVLYLLSYGMGLGLFKGTHTMEEAR 437 (535)
Q Consensus 359 ~~~l~~l~~~~~~~~~~~~~~v~~~l~-~sy~~L~~~~~k~c~~~ls~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~ 437 (535)
......+... ....+...+. -.++.||++ .+.++...|+++ .+..+.+-.+. | .+
T Consensus 237 ~~~~~~~~~~-------~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~l~~~l~---~-------~~--- 292 (903)
T PRK04841 237 HDSARRLAGI-------NASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDALIVRVT---G-------EE--- 292 (903)
T ss_pred hhhhHhhcCC-------CchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHHHHHHHc---C-------CC---
Confidence 1111111110 0223444433 347899998 999999999987 34444332211 1 11
Q ss_pred HHHHHHHHHHHHcccccc-C-CCCCcEEecHHHHHHHHHHhc
Q 009411 438 DRALTLVDKLKNSYLLLD-D-PESETFSEHDVVRHVAMSIAS 477 (535)
Q Consensus 438 ~~~~~~l~~L~~~sll~~-~-~~~~~~~mH~lv~~~a~~~~~ 477 (535)
...+.+++|.+.+++.. . ++...|+.|++++++++....
T Consensus 293 -~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 293 -NGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred -cHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 12357888999999753 2 234579999999999998863
No 5
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.44 E-value=1.4e-11 Score=129.51 Aligned_cols=291 Identities=19% Similarity=0.179 Sum_probs=189.6
Q ss_pred CcccccccHHHHHHHHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC-CCHHHHHHHHHHH
Q 009411 147 GYEAFESRMSTLNDVINALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-PDVKKIQGQIADK 224 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~ 224 (535)
.+.+.+-|...+ +.|. ..+.+.+.|..|+|.|||||+.+++..... =..+.|.+++.. .++...+..++..
T Consensus 17 ~~~~~v~R~rL~----~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 17 RPDNYVVRPRLL----DRLRRANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred CcccccccHHHH----HHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHHH
Confidence 344555665544 4454 347899999999999999999999873322 356899999765 4677888888888
Q ss_pred hCCCccCCC--------------chHHHHHHHHHHhc-CCcEEEEEeCCCCccc------ccccCCCCCCCCeEEEEeec
Q 009411 225 LGLKFYEES--------------ESGRARKLCERLKK-EKKILVILDDIWTNLD------LENVGIPFGVRGCRVLMTAR 283 (535)
Q Consensus 225 l~~~~~~~~--------------~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~------~~~~~~~~~~~gs~ilvTtR 283 (535)
++.-.+... .......+...+.. .++..+||||..-..+ ++.+ .....++-..++|||
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fL-l~~~P~~l~lvv~SR 168 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFL-LKHAPENLTLVVTSR 168 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHH-HHhCCCCeEEEEEec
Confidence 764333221 11234455554432 5689999999863321 2222 222267889999999
Q ss_pred Cchhhhc--ccCCcceEecC----CCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhhcC-CHH
Q 009411 284 SQDVLSS--KMDCQNNFLIG----VLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNK-NTF 356 (535)
Q Consensus 284 ~~~v~~~--~~~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~~~-~~~ 356 (535)
+..-... ..-....++++ .++.+|+.++|....+..-+.. ..+.|.+..+|.+-|+..++=.+++. +.+
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~----~~~~L~~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAA----DLKALYDRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChH----HHHHHHhhcccHHHHHHHHHHHccCCCcHH
Confidence 9853210 00111233333 3789999999998876544433 37789999999999999999888833 443
Q ss_pred HHHHHHHHhcCCCCCCCCcchHHHHH-HHHhhhcCCCCCchHHHHHHhhccCCCCCCCHHHHHHHhhhcccccCCCcHHH
Q 009411 357 EWKSALRELTRPSSGSFSGVAAEAYK-TSELSYNHLEGEELKSTFLLCCLMDFIENPSVLYLLSYGMGLGLFKGTHTMEE 435 (535)
Q Consensus 357 ~w~~~l~~l~~~~~~~~~~~~~~v~~-~l~~sy~~L~~~~~k~c~~~ls~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~ 435 (535)
.-...+... ...+.. ...--++.||++ ++..+.-||+++. +. ..|+..- .
T Consensus 245 q~~~~LsG~-----------~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~---f~-~eL~~~L-------------t 295 (894)
T COG2909 245 QSLRGLSGA-----------ASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSR---FN-DELCNAL-------------T 295 (894)
T ss_pred HHhhhccch-----------HHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHH---hh-HHHHHHH-------------h
Confidence 332222210 111222 224457899998 9999999999984 11 2222111 1
Q ss_pred HHHHHHHHHHHHHHcccccc--CCCCCcEEecHHHHHHHHHHhcc
Q 009411 436 ARDRALTLVDKLKNSYLLLD--DPESETFSEHDVVRHVAMSIASR 478 (535)
Q Consensus 436 ~~~~~~~~l~~L~~~sll~~--~~~~~~~~mH~lv~~~a~~~~~~ 478 (535)
.+..+..++++|.+++|+.. .+....|+.|.++.+|.+.....
T Consensus 296 g~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 296 GEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred cCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 12334568999999999852 35677999999999999998876
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.42 E-value=5.6e-11 Score=122.32 Aligned_cols=288 Identities=17% Similarity=0.073 Sum_probs=169.7
Q ss_pred cccccccHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHH
Q 009411 148 YEAFESRMSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 223 (535)
+..|+||++++++|...+. +...+.+.|+|++|+|||++++.++++.......-..+++++....+...++..++.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 4568999999999998874 334567889999999999999999998765432334667777777788899999999
Q ss_pred HhCCC-cc--CCCchHHHHHHHHHHhc-CCcEEEEEeCCCCcc------cccccCCCCC-CCC--eEEEEeecCchhhhc
Q 009411 224 KLGLK-FY--EESESGRARKLCERLKK-EKKILVILDDIWTNL------DLENVGIPFG-VRG--CRVLMTARSQDVLSS 290 (535)
Q Consensus 224 ~l~~~-~~--~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~------~~~~~~~~~~-~~g--s~ilvTtR~~~v~~~ 290 (535)
++... .+ ..+..+....+.+.+.. +++.+||||+++... .+..+..... ..+ ..+|.++....+...
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~ 188 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYI 188 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhh
Confidence 98652 22 12334455566666653 456899999997642 1222211111 122 335666655433211
Q ss_pred c------cCCcceEecCCCCHHHHHHHHHHHhCC-----CCCCchhHHHHHHHHHHcCCChHHHHHHHHHhh-----cC-
Q 009411 291 K------MDCQNNFLIGVLNESEARDLFKKLVGD-----KIENNDLKSLAMNIVKACRGLPIAIVTIARALR-----NK- 353 (535)
Q Consensus 291 ~------~~~~~~~~l~~L~~~ea~~Lf~~~~~~-----~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~-----~~- 353 (535)
. .-....+.+++++.++..+++...+.. ..++..++.+++......|..+.|+.++-.... +.
T Consensus 189 l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~ 268 (394)
T PRK00411 189 LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSR 268 (394)
T ss_pred cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCC
Confidence 0 111246899999999999999987631 122222233333333334557778777654321 11
Q ss_pred --CHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHhhhcCCCCCchHHHHHHhhccCC--CCCCCHHHHHHHh--hhcccc
Q 009411 354 --NTFEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGEELKSTFLLCCLMDF--IENPSVLYLLSYG--MGLGLF 427 (535)
Q Consensus 354 --~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~ls~fp~--~~~i~~~~Li~~W--~a~g~i 427 (535)
+...+..+.+.+. .....-.+..||.+ .|..+..++...+ ...+....+.... +++.+-
T Consensus 269 ~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~-~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 269 KVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLH-EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred CcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHH-HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 5566666666541 22234567899987 5555544442221 1345555554321 111110
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHccccc
Q 009411 428 KGTHTMEEARDRALTLVDKLKNSYLLL 454 (535)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~L~~~sll~ 454 (535)
... -....+.++++.|...|++.
T Consensus 334 ~~~----~~~~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 334 YEP----RTHTRFYEYINKLDMLGIIN 356 (394)
T ss_pred CCc----CcHHHHHHHHHHHHhcCCeE
Confidence 000 02244567889999999986
No 7
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.32 E-value=3.7e-10 Score=109.91 Aligned_cols=181 Identities=17% Similarity=0.244 Sum_probs=115.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHH--
Q 009411 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCER-- 244 (535)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-- 244 (535)
..+.+.+.|+|++|+|||||++.+++...... + ...|+ +....+..+++..++..++.+............+...
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 34456899999999999999999998865321 1 12233 3334567789999999998765544333333333332
Q ss_pred --HhcCCcEEEEEeCCCCcc--cccccCC--CCC---CCCeEEEEeecCchhh--h------cccCCcceEecCCCCHHH
Q 009411 245 --LKKEKKILVILDDIWTNL--DLENVGI--PFG---VRGCRVLMTARSQDVL--S------SKMDCQNNFLIGVLNESE 307 (535)
Q Consensus 245 --l~~~~~~LlVlDdv~~~~--~~~~~~~--~~~---~~gs~ilvTtR~~~v~--~------~~~~~~~~~~l~~L~~~e 307 (535)
...+++.+||+||++... .++.+.. ... .....|++|....-.. . ........+.+++|+.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 335678999999998753 3333221 111 2233456665543110 0 000113467899999999
Q ss_pred HHHHHHHHhCC---CCCCchhHHHHHHHHHHcCCChHHHHHHHHHh
Q 009411 308 ARDLFKKLVGD---KIENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (535)
Q Consensus 308 a~~Lf~~~~~~---~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L 350 (535)
..+++...+.. .....-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999877631 11112234678899999999999999998876
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.32 E-value=8.8e-10 Score=112.25 Aligned_cols=288 Identities=15% Similarity=0.133 Sum_probs=169.3
Q ss_pred ccccccHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhcccc-Cc---ceEEEEEeCCCCCHHHHHHH
Q 009411 149 EAFESRMSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADK-LF---DEVVYAEVSQRPDVKKIQGQ 220 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-~f---~~~~wv~v~~~~~~~~~~~~ 220 (535)
..++||++++++|..+|. +...+.+.|+|++|+|||++++.++++..... .. -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 468999999999999886 34456789999999999999999998754211 11 24567887777778889999
Q ss_pred HHHHh---CCCccC--CCchHHHHHHHHHHh-cCCcEEEEEeCCCCcc-c----ccccC-C--CCC--CCCeEEEEeecC
Q 009411 221 IADKL---GLKFYE--ESESGRARKLCERLK-KEKKILVILDDIWTNL-D----LENVG-I--PFG--VRGCRVLMTARS 284 (535)
Q Consensus 221 i~~~l---~~~~~~--~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~~-~----~~~~~-~--~~~--~~gs~ilvTtR~ 284 (535)
|+.++ +...+. .+..+....+.+.+. .+++++||||+++... . +..+. . ... +....+|.+|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 99988 333222 223344555666664 3567899999997651 1 12221 1 111 233445555544
Q ss_pred chhhh----cccC--CcceEecCCCCHHHHHHHHHHHhC---C-CCCCchhHHHHHHHHHHcCCChH-HHHHHHHHhh--
Q 009411 285 QDVLS----SKMD--CQNNFLIGVLNESEARDLFKKLVG---D-KIENNDLKSLAMNIVKACRGLPI-AIVTIARALR-- 351 (535)
Q Consensus 285 ~~v~~----~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~---~-~~~~~~l~~~~~~i~~~~~GlPL-ai~~~~~~L~-- 351 (535)
..... .... ....+.+++.+.++..+++...+. . ....++..+....++..+.|.|- |+.++-....
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 43211 0011 124689999999999999998763 1 11223333345567777778884 4333322211
Q ss_pred ---c--C-CHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHhhhcCCCCCchHHHHHHhhcc--CCCCCCCHHHHHHHhh-
Q 009411 352 ---N--K-NTFEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGEELKSTFLLCCLM--DFIENPSVLYLLSYGM- 422 (535)
Q Consensus 352 ---~--~-~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~ls~f--p~~~~i~~~~Li~~W~- 422 (535)
+ . +.+....+.+.+. .....-++..||.+ .+..+..+... ..+..+....+...+-
T Consensus 255 ~~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 1 4455555554431 12234566788887 66555544322 1334566666655331
Q ss_pred -hcccccCCCcHHHHHHHHHHHHHHHHHcccccc
Q 009411 423 -GLGLFKGTHTMEEARDRALTLVDKLKNSYLLLD 455 (535)
Q Consensus 423 -a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~ 455 (535)
++.+-.. .-....+.++++.|...|++..
T Consensus 320 ~~~~~~~~----~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 320 VCEDIGVD----PLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred HHHhcCCC----CCcHHHHHHHHHHHHhcCCeEE
Confidence 1111000 1123556678999999999963
No 9
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.31 E-value=1e-11 Score=118.01 Aligned_cols=192 Identities=22% Similarity=0.307 Sum_probs=104.3
Q ss_pred ccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHH---------
Q 009411 151 FESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI--------- 221 (535)
Q Consensus 151 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i--------- 221 (535)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+.....+ + .++|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 789999999999998877678999999999999999999999874321 2 3344444333322 112221
Q ss_pred -HHHhCCCcc-----------CCCchHHHHHHHHHHhc-CCcEEEEEeCCCCcc-ccc---c----c---C-CCCCCCCe
Q 009411 222 -ADKLGLKFY-----------EESESGRARKLCERLKK-EKKILVILDDIWTNL-DLE---N----V---G-IPFGVRGC 276 (535)
Q Consensus 222 -~~~l~~~~~-----------~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~-~~~---~----~---~-~~~~~~gs 276 (535)
...++...+ ..........+.+.+.. +++++||+||+.... ... . + . ........
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 111211111 11223445566666653 345999999996555 111 1 1 0 11112334
Q ss_pred EEEEeecCchhhhc-------ccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHH
Q 009411 277 RVLMTARSQDVLSS-------KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (535)
Q Consensus 277 ~ilvTtR~~~v~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 345 (535)
.+++++........ ..+....+.+++|+.+++++++...+.....-+.-.+..++|...+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 45555544433211 2233456999999999999999997643311111244578999999999998764
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.25 E-value=9.4e-10 Score=109.09 Aligned_cols=273 Identities=13% Similarity=0.052 Sum_probs=149.8
Q ss_pred cccccccHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHH
Q 009411 148 YEAFESRMSTLNDVINALK-----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 222 (535)
...|+|+++.++.|..++. ......+.++|++|+|||+||+.+++..... + ..+..+...... .+...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~-~l~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPG-DLAAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCch-hHHHHH
Confidence 3578999999999888886 3345678899999999999999999887532 2 122221111112 222333
Q ss_pred HHhCCCc----cC--CCchHHHHHHHHHHhcCCcEEEEEeCCCCcccccccCCCCCCCCeEEEEeecCchhhhcccC-Cc
Q 009411 223 DKLGLKF----YE--ESESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDVLSSKMD-CQ 295 (535)
Q Consensus 223 ~~l~~~~----~~--~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTtR~~~v~~~~~~-~~ 295 (535)
..++... ++ .-.....+.+...+. +.+..+|+++..+...+... . .+.+-|..||+...+...... ..
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~-~~~~~~v~~~~~~~~~~~~~-~---~~~~li~~t~~~~~l~~~l~sR~~ 151 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAME-DFRLDIVIGKGPSARSVRLD-L---PPFTLVGATTRAGMLTSPLRDRFG 151 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHh-hhheeeeeccCccccceeec-C---CCeEEEEecCCccccCHHHHhhcc
Confidence 3333211 00 001112233444443 34566777776555544432 1 235666677776544321111 23
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCCCc
Q 009411 296 NNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEWKSALRELTRPSSGSFSG 375 (535)
Q Consensus 296 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~~~~~~~~ 375 (535)
..+.+++++.++..+++.+.++..... --.+....|++.|+|.|-.+..++..+. ... ........ . ..
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~~~~-~~~~al~~ia~~~~G~pR~~~~ll~~~~-------~~a-~~~~~~~i-t-~~ 220 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLLNVE-IEPEAALEIARRSRGTPRIANRLLRRVR-------DFA-QVRGQKII-N-RD 220 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhCCC-cCHHHHHHHHHHhCCCcchHHHHHHHHH-------HHH-HHcCCCCc-C-HH
Confidence 468999999999999999888532211 1134678999999999966554444321 110 00000000 0 00
Q ss_pred chHHHHHHHHhhhcCCCCCchHHHHH-HhhccCCCCCCCHHHHHHHhhhcccccCCCcHHHHHHHHHHHHH-HHHHcccc
Q 009411 376 VAAEAYKTSELSYNHLEGEELKSTFL-LCCLMDFIENPSVLYLLSYGMGLGLFKGTHTMEEARDRALTLVD-KLKNSYLL 453 (535)
Q Consensus 376 ~~~~v~~~l~~sy~~L~~~~~k~c~~-~ls~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~l~-~L~~~sll 453 (535)
.-......+...|..|++. .+..+. .++.++. ..+..+.+.... |- +.. .....++ .|++.+|+
T Consensus 221 ~v~~~l~~l~~~~~~l~~~-~~~~L~al~~~~~~-~~~~~~~ia~~l---g~-----~~~----~~~~~~e~~Li~~~li 286 (305)
T TIGR00635 221 IALKALEMLMIDELGLDEI-DRKLLSVLIEQFQG-GPVGLKTLAAAL---GE-----DAD----TIEDVYEPYLLQIGFL 286 (305)
T ss_pred HHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHhCC-CcccHHHHHHHh---CC-----Ccc----hHHHhhhHHHHHcCCc
Confidence 0112222355667788876 666665 5566653 356665554332 11 112 2233466 58889999
Q ss_pred ccC
Q 009411 454 LDD 456 (535)
Q Consensus 454 ~~~ 456 (535)
...
T Consensus 287 ~~~ 289 (305)
T TIGR00635 287 QRT 289 (305)
T ss_pred ccC
Confidence 654
No 11
>PF05729 NACHT: NACHT domain
Probab=99.24 E-value=9.4e-11 Score=104.99 Aligned_cols=140 Identities=20% Similarity=0.339 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccC----cceEEEEEeCCCCCHH---HHHHHHHHHhCCCccCCCchHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKL----FDEVVYAEVSQRPDVK---KIQGQIADKLGLKFYEESESGRARKLCE 243 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~----f~~~~wv~v~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 243 (535)
|++.|+|.+|+||||+++.++........ +...+|++.+...... .+...+........... ...+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-----~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPI-----EELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhh-----HHHHHH
Confidence 57899999999999999999988765443 3456777776544322 33333433332221111 112333
Q ss_pred HHhcCCcEEEEEeCCCCccc-------------ccccCCCC-CCCCeEEEEeecCchh--hhcccCCcceEecCCCCHHH
Q 009411 244 RLKKEKKILVILDDIWTNLD-------------LENVGIPF-GVRGCRVLMTARSQDV--LSSKMDCQNNFLIGVLNESE 307 (535)
Q Consensus 244 ~l~~~~~~LlVlDdv~~~~~-------------~~~~~~~~-~~~gs~ilvTtR~~~v--~~~~~~~~~~~~l~~L~~~e 307 (535)
.+...++++||||++++... +..+ .+. ..++++++||+|.... ..........+.+.+|++++
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQL-LPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHH-hhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 33456899999999975432 1111 111 1468999999999876 22233444689999999999
Q ss_pred HHHHHHHHh
Q 009411 308 ARDLFKKLV 316 (535)
Q Consensus 308 a~~Lf~~~~ 316 (535)
..+++.+.+
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998875
No 12
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.23 E-value=1e-09 Score=109.63 Aligned_cols=275 Identities=12% Similarity=0.044 Sum_probs=149.8
Q ss_pred CCcccccccHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALK-----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 220 (535)
.....|+|+++.++.+...+. ....+.+.|+|++|+|||+||+.+++..... + .++..+. ......+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~~ 95 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLAA 95 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHHH
Confidence 456789999999988877665 3345678899999999999999999987642 2 1222211 111222333
Q ss_pred HHHHhCCCc----cC--CCchHHHHHHHHHHhcCCcEEEEEeCCCCcccccccCCCCCCCCeEEEEeecCchhhhcccC-
Q 009411 221 IADKLGLKF----YE--ESESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDVLSSKMD- 293 (535)
Q Consensus 221 i~~~l~~~~----~~--~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTtR~~~v~~~~~~- 293 (535)
++..+.... ++ .-.....+.+...+. +.+..+++|+..+...+... . .+.+-|..||+...+......
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~~~-l---~~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRLDIMIGKGPAARSIRLD-L---PPFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHH-hcceeeeeccCccccceeec-C---CCceEEeecCCcccCCHHHHHh
Confidence 333332211 00 000111122233333 34455566655443333211 1 224556667775544321111
Q ss_pred CcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCC
Q 009411 294 CQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEWKSALRELTRPSSGSF 373 (535)
Q Consensus 294 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~~~~~~ 373 (535)
....+.+++++.++..+++.+.+......- -.+.+..|++.|+|.|-.+..+...+. .|.... ..... .
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~~-~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~---~~~~I-~- 239 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVEI-DEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK---GDGVI-T- 239 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc---CCCCC-C-
Confidence 134689999999999999998876322211 134688999999999965544444322 121111 00000 0
Q ss_pred CcchHHHHHHHHhhhcCCCCCchHHHHH-HhhccCCCCCCCHHHHHHHhhhcccccCCCcHHHHHHHHHHHHH-HHHHcc
Q 009411 374 SGVAAEAYKTSELSYNHLEGEELKSTFL-LCCLMDFIENPSVLYLLSYGMGLGLFKGTHTMEEARDRALTLVD-KLKNSY 451 (535)
Q Consensus 374 ~~~~~~v~~~l~~sy~~L~~~~~k~c~~-~ls~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~l~-~L~~~s 451 (535)
...-......+...+..|++. .+..+. ....|+.+ .+..+.+.... | .+...++ +.++ .|++.+
T Consensus 240 ~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~a~~l---g-----~~~~~~~----~~~e~~Li~~~ 305 (328)
T PRK00080 240 KEIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGG-PVGLDTLAAAL---G-----EERDTIE----DVYEPYLIQQG 305 (328)
T ss_pred HHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCC-ceeHHHHHHHH---C-----CCcchHH----HHhhHHHHHcC
Confidence 001223334456677788876 667665 66677753 56776664332 1 1122223 2355 688899
Q ss_pred ccccC
Q 009411 452 LLLDD 456 (535)
Q Consensus 452 ll~~~ 456 (535)
|++..
T Consensus 306 li~~~ 310 (328)
T PRK00080 306 FIQRT 310 (328)
T ss_pred CcccC
Confidence 99754
No 13
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.15 E-value=1.9e-09 Score=119.52 Aligned_cols=309 Identities=16% Similarity=0.198 Sum_probs=183.5
Q ss_pred cccccHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhccc-cCcceEEEEEeCCCC---CHHHHHHHHH
Q 009411 150 AFESRMSTLNDVINALK---NPDVHMIGAYGMAGVGKTMLVKEVARQAKAD-KLFDEVVYAEVSQRP---DVKKIQGQIA 222 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~wv~v~~~~---~~~~~~~~i~ 222 (535)
.++||+.+++.|...+. .....++.+.|.+|||||+|+++|......+ ++|-.-.+-....+. ...+.++++.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 36899999999998887 4566799999999999999999999875543 222111111122221 2233333333
Q ss_pred HHh-------------------CCCc------------------cCC--Cc---hH-----HHHHHHHHHhcCCcEEEEE
Q 009411 223 DKL-------------------GLKF------------------YEE--SE---SG-----RARKLCERLKKEKKILVIL 255 (535)
Q Consensus 223 ~~l-------------------~~~~------------------~~~--~~---~~-----~~~~l~~~l~~~~~~LlVl 255 (535)
.++ +... +.. +. .. ....+.......++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 333 1110 000 00 00 1112222333456999999
Q ss_pred eCCC-Ccc-ccccc---C--CC---CCCCCeEEEEeecCc-hhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCch
Q 009411 256 DDIW-TNL-DLENV---G--IP---FGVRGCRVLMTARSQ-DVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENND 324 (535)
Q Consensus 256 Ddv~-~~~-~~~~~---~--~~---~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 324 (535)
||+. -+. .+..+ . .. +..+..-.+.|.+.. ........+...|.|.||+..+...+.....+.....+
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~- 239 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLP- 239 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccccc-
Confidence 9994 221 11111 1 10 001111123333332 11122334557999999999999999999987633222
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhhcC-------CHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHhhhcCCCCCchH
Q 009411 325 LKSLAMNIVKACRGLPIAIVTIARALRNK-------NTFEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGEELK 397 (535)
Q Consensus 325 l~~~~~~i~~~~~GlPLai~~~~~~L~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k 397 (535)
.+....|.++..|+|+.+..+-..+... +...|..-...+.... ..+.+...+..-.+.||.. .+
T Consensus 240 -~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~------~~~~vv~~l~~rl~kL~~~-t~ 311 (849)
T COG3899 240 -APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILA------TTDAVVEFLAARLQKLPGT-TR 311 (849)
T ss_pred -chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCch------hhHHHHHHHHHHHhcCCHH-HH
Confidence 3568899999999999999999998742 4445554444432211 1334667789999999998 99
Q ss_pred HHHHHhhccCCCCCCCHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHHcccccc-----CCC-CCc--E-EecHHH
Q 009411 398 STFLLCCLMDFIENPSVLYLLSYGMGLGLFKGTHTMEEARDRALTLVDKLKNSYLLLD-----DPE-SET--F-SEHDVV 468 (535)
Q Consensus 398 ~c~~~ls~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~-----~~~-~~~--~-~mH~lv 468 (535)
..+...|++. ..|+...|...+-. ........+++.|....++-. .+. ... | ..|++|
T Consensus 312 ~Vl~~AA~iG--~~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 312 EVLKAAACIG--NRFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHhC--ccCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 9999999999 77888888766621 112223334555544444421 111 112 2 569999
Q ss_pred HHHHHHHhcccc
Q 009411 469 RHVAMSIASRDQ 480 (535)
Q Consensus 469 ~~~a~~~~~~e~ 480 (535)
++.|-....++.
T Consensus 379 qqaaY~~i~~~~ 390 (849)
T COG3899 379 QQAAYNLIPESQ 390 (849)
T ss_pred HHHHhccCchhh
Confidence 999987776544
No 14
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.96 E-value=1.4e-08 Score=98.82 Aligned_cols=225 Identities=15% Similarity=0.137 Sum_probs=130.0
Q ss_pred CCcccccccHHHH---HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHH
Q 009411 146 KGYEAFESRMSTL---NDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (535)
Q Consensus 146 ~~~~~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 222 (535)
.....++|.+..+ .-|...+..+.+....+||++|+||||||+.+....... | ..++...+-..-+++++
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdlr~i~ 93 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDLREII 93 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHHHHHH
Confidence 3345566655444 234455567778888899999999999999999876533 3 33443332222222222
Q ss_pred HHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc-ccccCCCCCCCCeEEEE--eecCchhh--hcccCCcce
Q 009411 223 DKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD-LENVGIPFGVRGCRVLM--TARSQDVL--SSKMDCQNN 297 (535)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-~~~~~~~~~~~gs~ilv--TtR~~~v~--~~~~~~~~~ 297 (535)
+ .-.+....+++.+|++|.|+.-+. -+...+|.-.+|.-|+| ||-++... ....+...+
T Consensus 94 e----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~v 157 (436)
T COG2256 94 E----------------EARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARV 157 (436)
T ss_pred H----------------HHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhhe
Confidence 2 222223337899999999986532 22233665577887777 55555331 223455679
Q ss_pred EecCCCCHHHHHHHHHHHhCC---CCC--Cc-hhHHHHHHHHHHcCCChHHHHH---HHHHhh-cC---CHHHHHHHHHH
Q 009411 298 FLIGVLNESEARDLFKKLVGD---KIE--NN-DLKSLAMNIVKACRGLPIAIVT---IARALR-NK---NTFEWKSALRE 364 (535)
Q Consensus 298 ~~l~~L~~~ea~~Lf~~~~~~---~~~--~~-~l~~~~~~i~~~~~GlPLai~~---~~~~L~-~~---~~~~w~~~l~~ 364 (535)
+.+++|+.++-.+++.+.+-. ... .. --+++...|+..++|---++-. ++..+. .. ..+..++.+.+
T Consensus 158 f~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~ 237 (436)
T COG2256 158 FELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQR 237 (436)
T ss_pred eeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhh
Confidence 999999999999999984421 111 11 1134667899999997543322 222222 21 23444444444
Q ss_pred hcCCCCCCCCcchHHHHHHHHhhhcCCCCC
Q 009411 365 LTRPSSGSFSGVAAEAYKTSELSYNHLEGE 394 (535)
Q Consensus 365 l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~ 394 (535)
-...... ..+...++..+|.-|...=.++
T Consensus 238 ~~~~~Dk-~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 238 RSARFDK-DGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred hhhccCC-CcchHHHHHHHHHHhhccCCcC
Confidence 2221111 1122566777777777766555
No 15
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.92 E-value=2.3e-08 Score=103.02 Aligned_cols=195 Identities=15% Similarity=0.197 Sum_probs=114.4
Q ss_pred CCcccccccHHHHHH---HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLND---VINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 222 (535)
.....|+|++..+.. +..++.......+.|+|++|+||||||+.+++..... | +.++....-..-++.++
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~--~-----~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP--F-----EALSAVTSGVKDLREVI 81 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E-----EEEecccccHHHHHHHH
Confidence 345568898887665 7777777777788999999999999999999876532 2 33322211111122222
Q ss_pred HHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccCCCCCCCCeEEEE--eecCchh--hhcccCCcc
Q 009411 223 DKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENVGIPFGVRGCRVLM--TARSQDV--LSSKMDCQN 296 (535)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~~~~~~~~~gs~ilv--TtR~~~v--~~~~~~~~~ 296 (535)
.. .......+++.+|++|+++... ..+.+ .+.-..+..++| ||.+... .........
T Consensus 82 ~~----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~L-L~~le~~~iilI~att~n~~~~l~~aL~SR~~ 144 (413)
T PRK13342 82 EE----------------ARQRRSAGRRTILFIDEIHRFNKAQQDAL-LPHVEDGTITLIGATTENPSFEVNPALLSRAQ 144 (413)
T ss_pred HH----------------HHHhhhcCCceEEEEechhhhCHHHHHHH-HHHhhcCcEEEEEeCCCChhhhccHHHhccce
Confidence 11 1111223577899999998653 23333 121123444444 3444321 111223346
Q ss_pred eEecCCCCHHHHHHHHHHHhCCC-CCC-chhHHHHHHHHHHcCCChHHHHHHHHHhh---cC-CHHHHHHHHHH
Q 009411 297 NFLIGVLNESEARDLFKKLVGDK-IEN-NDLKSLAMNIVKACRGLPIAIVTIARALR---NK-NTFEWKSALRE 364 (535)
Q Consensus 297 ~~~l~~L~~~ea~~Lf~~~~~~~-~~~-~~l~~~~~~i~~~~~GlPLai~~~~~~L~---~~-~~~~w~~~l~~ 364 (535)
.+.+.+++.++...++.+.+... ... .-..+....|++.|+|.|..+..+..... .. +.+....++..
T Consensus 145 ~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~ 218 (413)
T PRK13342 145 VFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELLEEALQK 218 (413)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHHHHHHhh
Confidence 89999999999999999876421 111 12245677899999999976655444332 11 44444444443
No 16
>PRK06893 DNA replication initiation factor; Validated
Probab=98.89 E-value=3.2e-08 Score=93.43 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=92.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (535)
..+.+.|+|++|+|||+|++.+++....+ ...+.|+++..... . ...+.+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~~---~--------------------~~~~~~~~~-- 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQY---F--------------------SPAVLENLE-- 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhhh---h--------------------hHHHHhhcc--
Confidence 34678999999999999999999986543 33456776532100 0 011222232
Q ss_pred CcEEEEEeCCCCc---ccccc-cCCCCC---CCCeEEEEeecCc----------hhhhcccCCcceEecCCCCHHHHHHH
Q 009411 249 KKILVILDDIWTN---LDLEN-VGIPFG---VRGCRVLMTARSQ----------DVLSSKMDCQNNFLIGVLNESEARDL 311 (535)
Q Consensus 249 ~~~LlVlDdv~~~---~~~~~-~~~~~~---~~gs~ilvTtR~~----------~v~~~~~~~~~~~~l~~L~~~ea~~L 311 (535)
+.-+|+|||+|.. ..|+. +...++ ..|..+||+|.+. .+.. .......+++++++.++.+++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCHHHHHHH
Confidence 3359999999863 33432 111111 3455565544433 2222 223446899999999999999
Q ss_pred HHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHH
Q 009411 312 FKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARA 349 (535)
Q Consensus 312 f~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~ 349 (535)
+++.+......- -.++..-|++.+.|..-.+..+-..
T Consensus 170 L~~~a~~~~l~l-~~~v~~~L~~~~~~d~r~l~~~l~~ 206 (229)
T PRK06893 170 LQRNAYQRGIEL-SDEVANFLLKRLDRDMHTLFDALDL 206 (229)
T ss_pred HHHHHHHcCCCC-CHHHHHHHHHhccCCHHHHHHHHHH
Confidence 998885322111 1356788999999877665544443
No 17
>PRK04195 replication factor C large subunit; Provisional
Probab=98.83 E-value=2.3e-07 Score=97.62 Aligned_cols=185 Identities=14% Similarity=0.107 Sum_probs=111.0
Q ss_pred cCCcccccccHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHH
Q 009411 145 IKGYEAFESRMSTLNDVINALKN----PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (535)
Q Consensus 145 ~~~~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 220 (535)
|.....++|+++.++.+.+|+.. ...+.+.|+|++|+||||+|+.+++... |. ++-++.++..+. +.+..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~-~~i~~ 83 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTA-DVIER 83 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccH-HHHHH
Confidence 34456789999999999988862 2267899999999999999999999874 22 333444443322 22333
Q ss_pred HHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc------ccccCCCCCCCCeEEEEeecCchhh-h-ccc
Q 009411 221 IADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD------LENVGIPFGVRGCRVLMTARSQDVL-S-SKM 292 (535)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~------~~~~~~~~~~~gs~ilvTtR~~~v~-~-~~~ 292 (535)
++....... .+...++-+||+|+++.... +..+.......+..||+|+....-. . ...
T Consensus 84 ~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 84 VAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHh
Confidence 322221100 01112568999999976422 2222111123344566666443211 1 112
Q ss_pred CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHh
Q 009411 293 DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (535)
Q Consensus 293 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L 350 (535)
.....+.+.+++.++....+.+.+......-+ .++...|++.++|..-.+......+
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~-~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIECD-DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33467999999999999998887742211111 3467899999999775554433333
No 18
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.79 E-value=9.2e-09 Score=100.79 Aligned_cols=290 Identities=20% Similarity=0.180 Sum_probs=187.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (535)
..+.+.++|.|||||||++-.+.+ ... .+-+.+.++...+-.+...+.-.+...++.+... .......+..++. +
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~-~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~--g~~~~~~~~~~~~-~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AAS-EYADGVAFVDLAPITDPALVFPTLAGALGLHVQP--GDSAVDTLVRRIG-D 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhh-hcccceeeeeccccCchhHhHHHHHhhccccccc--chHHHHHHHHHHh-h
Confidence 358899999999999999999998 433 2236677888777777777777777777765433 2233445666666 5
Q ss_pred CcEEEEEeCCCCccc-ccccC--CCCCCCCeEEEEeecCchhhhcccCCcceEecCCCCHH-HHHHHHHHHhC----CCC
Q 009411 249 KKILVILDDIWTNLD-LENVG--IPFGVRGCRVLMTARSQDVLSSKMDCQNNFLIGVLNES-EARDLFKKLVG----DKI 320 (535)
Q Consensus 249 ~~~LlVlDdv~~~~~-~~~~~--~~~~~~gs~ilvTtR~~~v~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~----~~~ 320 (535)
+|.++|+||...... ...+. +-.+.+.-.|+.|+|.... ........+++|+.- ++.++|...+. .-.
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 899999999754321 11110 1112334568888888743 344567778888754 78899887663 111
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHHhhcCCHHHHHHHHHH----hcCCCCCCCCcchHHHHHHHHhhhcCCCCCch
Q 009411 321 ENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEWKSALRE----LTRPSSGSFSGVAAEAYKTSELSYNHLEGEEL 396 (535)
Q Consensus 321 ~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~~~~~~~w~~~l~~----l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~ 396 (535)
-.........+|.++..|.|++|...++..+.....+....++. +... ..............+.+||.-|... .
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw-e 241 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW-E 241 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-H
Confidence 11222456889999999999999999999997755554444432 3222 2222223667889999999999998 8
Q ss_pred HHHHHHhhccCCCCCCCHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHHccccccC--CCCCcEEecHHHHHHHHH
Q 009411 397 KSTFLLCCLMDFIENPSVLYLLSYGMGLGLFKGTHTMEEARDRALTLVDKLKNSYLLLDD--PESETFSEHDVVRHVAMS 474 (535)
Q Consensus 397 k~c~~~ls~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~--~~~~~~~mH~lv~~~a~~ 474 (535)
+..|..++.|...+.-. ...|.+.|-... ..... .-..+..|++.+++... .....|+.-+-+|.|+..
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~-~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYL-VLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALA 312 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHH-HHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999998444433 223433332110 01111 12235567778877532 233467788888888887
Q ss_pred Hhcc
Q 009411 475 IASR 478 (535)
Q Consensus 475 ~~~~ 478 (535)
+..+
T Consensus 313 eL~r 316 (414)
T COG3903 313 ELHR 316 (414)
T ss_pred HHHh
Confidence 7764
No 19
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=6.4e-06 Score=82.70 Aligned_cols=279 Identities=22% Similarity=0.241 Sum_probs=163.5
Q ss_pred cccccHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHh
Q 009411 150 AFESRMSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL 225 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 225 (535)
.+.+|+.+++++...|. +....-+.|+|.+|+|||+.++.+.........=..+++|++....+...++..|++.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 37899999999998776 33344489999999999999999999876542222278999999999999999999999
Q ss_pred CC-CccCCCchHHHHHHHHHHhc-CCcEEEEEeCCCCcccc-----ccc-CCCCCCCCeEEEE--eecCchhh-------
Q 009411 226 GL-KFYEESESGRARKLCERLKK-EKKILVILDDIWTNLDL-----ENV-GIPFGVRGCRVLM--TARSQDVL------- 288 (535)
Q Consensus 226 ~~-~~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~~-----~~~-~~~~~~~gs~ilv--TtR~~~v~------- 288 (535)
+. +....+..+....+.+.+.. ++.+++|||+++....- -.+ ..+ ....++|++ .+.+....
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~-~~~~~~v~vi~i~n~~~~~~~ld~rv 176 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAP-GENKVKVSIIAVSNDDKFLDYLDPRV 176 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhc-cccceeEEEEEEeccHHHHHHhhhhh
Confidence 63 33335556666777777754 67899999999754322 122 111 122444333 33333221
Q ss_pred hcccCCcceEecCCCCHHHHHHHHHHHhC----CCCCCchhHHHHHHHHHHcCC-ChHHHHHHHHHhh--c-----C-CH
Q 009411 289 SSKMDCQNNFLIGVLNESEARDLFKKLVG----DKIENNDLKSLAMNIVKACRG-LPIAIVTIARALR--N-----K-NT 355 (535)
Q Consensus 289 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~----~~~~~~~l~~~~~~i~~~~~G-lPLai~~~~~~L~--~-----~-~~ 355 (535)
....+. ..+..+|-+.+|-...+..++. .....++.-+++..++..-+| --.||.++-.... . + +.
T Consensus 177 ~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~ 255 (366)
T COG1474 177 KSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSE 255 (366)
T ss_pred hhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCH
Confidence 112222 3488899999999999998773 233334444445555555554 3355555433322 1 1 22
Q ss_pred HHHHHHHHHhcCCCCCCCCcchHHHHHHHHhhhcCCCCCchHHHHHHhhccCCCCCCCHHHHHHHh--hhcccccCCCcH
Q 009411 356 FEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGEELKSTFLLCCLMDFIENPSVLYLLSYG--MGLGLFKGTHTM 433 (535)
Q Consensus 356 ~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~ls~fp~~~~i~~~~Li~~W--~a~g~i~~~~~~ 433 (535)
..-..+.... -.....-....||.+ .|-.+......- ..+....+.... +.+.+ ..
T Consensus 256 ~~v~~a~~~~--------------~~~~~~~~~~~L~~~-~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~----~~- 313 (366)
T COG1474 256 DHVREAQEEI--------------ERDVLEEVLKTLPLH-QKIVLLAIVELT--VEISTGELYDVYESLCERL----RT- 313 (366)
T ss_pred HHHHHHHHHh--------------hHHHHHHHHHcCCHh-HHHHHHHHHHhc--CCCChHHHHHHHHHHHhhh----Cc-
Confidence 2333222211 122233346788887 555544333221 334444333221 11111 11
Q ss_pred HHHHHHHHHHHHHHHHccccc
Q 009411 434 EEARDRALTLVDKLKNSYLLL 454 (535)
Q Consensus 434 ~~~~~~~~~~l~~L~~~sll~ 454 (535)
....+.+++++|...+++.
T Consensus 314 --~~~~~~~ii~~L~~lgiv~ 332 (366)
T COG1474 314 --SQRRFSDIISELEGLGIVS 332 (366)
T ss_pred --hHHHHHHHHHHHHhcCeEE
Confidence 3345667788888888774
No 20
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.76 E-value=9.2e-07 Score=94.72 Aligned_cols=202 Identities=15% Similarity=0.158 Sum_probs=118.4
Q ss_pred ccccccHHHHHHHHHHhc----CCC-ceEEEEEcCCCCcHHHHHHHHHHHhccc---cCcc--eEEEEEeCCCCCHHHHH
Q 009411 149 EAFESRMSTLNDVINALK----NPD-VHMIGAYGMAGVGKTMLVKEVARQAKAD---KLFD--EVVYAEVSQRPDVKKIQ 218 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~----~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~---~~f~--~~~wv~v~~~~~~~~~~ 218 (535)
..+.||++++++|...|. ..+ ..++.|+|++|+|||++++.+.+..... .... .+++|+...-.+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 457899999999988876 222 3577899999999999999998775421 1122 35677776667788889
Q ss_pred HHHHHHhCCCccC--CCchHHHHHHHHHHhc--CCcEEEEEeCCCCccc-----ccc-cCCCCCCCCeEEEE--eecCch
Q 009411 219 GQIADKLGLKFYE--ESESGRARKLCERLKK--EKKILVILDDIWTNLD-----LEN-VGIPFGVRGCRVLM--TARSQD 286 (535)
Q Consensus 219 ~~i~~~l~~~~~~--~~~~~~~~~l~~~l~~--~~~~LlVlDdv~~~~~-----~~~-~~~~~~~~gs~ilv--TtR~~~ 286 (535)
..|..++....+. .........++..+.. +...+||||+++.... +-. +..+. ..+++|+| +|....
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~-~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT-KINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh-ccCCeEEEEEecCchh
Confidence 9999888443332 2233445556655522 2345999999975421 111 11121 23445444 333221
Q ss_pred hh----hcc--cCCcceEecCCCCHHHHHHHHHHHhCC---CCCCchhHHHHHHHHHHcCCChHHHHHHHHHhh
Q 009411 287 VL----SSK--MDCQNNFLIGVLNESEARDLFKKLVGD---KIENNDLKSLAMNIVKACRGLPIAIVTIARALR 351 (535)
Q Consensus 287 v~----~~~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~---~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~ 351 (535)
.. ... .-....+...|.+.++-.+++..++.. ..++..++-+|+.++...|-.-.||.++-....
T Consensus 914 LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 914 LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 11 100 011234677999999999999988752 122223333333333333344566665554443
No 21
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=4.4e-07 Score=96.49 Aligned_cols=181 Identities=13% Similarity=0.184 Sum_probs=112.4
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccC-------------------cceEEE
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKL-------------------FDEVVY 205 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~-------------------f~~~~w 205 (535)
..+..++|.+..++.|.+++..+++ ..+.++|..|+||||+|+.+.+....+.. |..+++
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 4466789999999999999987664 46679999999999999999887643211 111222
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCccc--ccccCCCCC--CCCeE
Q 009411 206 AEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTNLD--LENVGIPFG--VRGCR 277 (535)
Q Consensus 206 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~~--~~~~~~~~~--~~gs~ 277 (535)
++.+....+ +.+..+.+... .++.-++|||+++.... +..+...+. ....+
T Consensus 93 IDAas~rgV---------------------DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 93 MDAASNRGV---------------------DEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred ecccccccH---------------------HHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 222211111 12222333221 23456899999986532 333321111 34677
Q ss_pred EEEeecCch-hhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh-HHHHHHHH
Q 009411 278 VLMTARSQD-VLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP-IAIVTIAR 348 (535)
Q Consensus 278 ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP-Lai~~~~~ 348 (535)
+|+||.+.. +..........+.+.+++.++..+.+.+.+......- -.+....|++.++|.. -|+..+-.
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i-d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF-EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 777776653 3222233446899999999999999998875332211 1345778999999865 46555443
No 22
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.75 E-value=3.6e-07 Score=91.97 Aligned_cols=197 Identities=15% Similarity=0.145 Sum_probs=110.2
Q ss_pred CCcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCc-ceEEEEEeCCCCCH-HHHHH---H
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLF-DEVVYAEVSQRPDV-KKIQG---Q 220 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~wv~v~~~~~~-~~~~~---~ 220 (535)
.....++|++..++.+..++..+..+.+.++|++|+||||+|+.+++..... .+ ...++++++..... ...+. .
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCcc
Confidence 3356788999999999998887776778899999999999999999876532 12 22344544321100 00000 0
Q ss_pred HHHHhCCC-ccCCCchHHHHHHHHHHhc-----CCcEEEEEeCCCCccc--ccccCCCC--CCCCeEEEEeecCch-hhh
Q 009411 221 IADKLGLK-FYEESESGRARKLCERLKK-----EKKILVILDDIWTNLD--LENVGIPF--GVRGCRVLMTARSQD-VLS 289 (535)
Q Consensus 221 i~~~l~~~-~~~~~~~~~~~~l~~~l~~-----~~~~LlVlDdv~~~~~--~~~~~~~~--~~~gs~ilvTtR~~~-v~~ 289 (535)
....++.. ............+.+.... +.+-+||+||+..... ...+...+ ....+++|+||.... +..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 00000000 0001112222333322211 2345899999965421 22221111 134567777775432 212
Q ss_pred cccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHH
Q 009411 290 SKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIV 344 (535)
Q Consensus 290 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~ 344 (535)
........+.+.+++.++...++...+...... --.+....|++.++|.+-.+.
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 122334578899999999999998876422211 113467889999999865543
No 23
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.75 E-value=2.8e-08 Score=85.14 Aligned_cols=116 Identities=21% Similarity=0.327 Sum_probs=80.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccc---CcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC-CCchHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADK---LFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE-ESESGRARKLCER 244 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~---~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 244 (535)
+.+++.|+|++|+|||++++.+.+...... .-..++|+.++...+...+...++..++.+... .........+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 347899999999999999999998764210 124467999988889999999999999988776 4555566778888
Q ss_pred HhcCCcEEEEEeCCCCc-c--cccccCCCCCCCCeEEEEeecC
Q 009411 245 LKKEKKILVILDDIWTN-L--DLENVGIPFGVRGCRVLMTARS 284 (535)
Q Consensus 245 l~~~~~~LlVlDdv~~~-~--~~~~~~~~~~~~gs~ilvTtR~ 284 (535)
+...+..+||+|+++.. . .++.+....+..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 87666679999999764 2 2333322223567788887766
No 24
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.71 E-value=1.4e-07 Score=89.11 Aligned_cols=169 Identities=15% Similarity=0.174 Sum_probs=102.6
Q ss_pred cHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCC
Q 009411 154 RMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEES 233 (535)
Q Consensus 154 R~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~ 233 (535)
....++.+..++.....+.+.|+|++|+|||+||+.+++..... ....++++++.-.. ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~------~~------------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ------AD------------ 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH------hH------------
Confidence 45567777777666667789999999999999999999876532 33455665443211 00
Q ss_pred chHHHHHHHHHHhcCCcEEEEEeCCCCcc---ccc-ccCCCCC---CCCeEEEEeecCchhh--------hcccCCcceE
Q 009411 234 ESGRARKLCERLKKEKKILVILDDIWTNL---DLE-NVGIPFG---VRGCRVLMTARSQDVL--------SSKMDCQNNF 298 (535)
Q Consensus 234 ~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---~~~-~~~~~~~---~~gs~ilvTtR~~~v~--------~~~~~~~~~~ 298 (535)
..+...+. +.-+||+||++... .|. .+...+. ..+..+|+||+..... .........+
T Consensus 82 -----~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i 154 (226)
T TIGR03420 82 -----PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred -----HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeE
Confidence 01112222 23489999997543 222 2211111 2345788888754311 0011123579
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHh
Q 009411 299 LIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (535)
Q Consensus 299 ~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L 350 (535)
++.+++.++...++...+...... --.+..+.|++.++|+|..+..+...+
T Consensus 155 ~l~~l~~~e~~~~l~~~~~~~~~~-~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRAARRGLQ-LPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999999999998765311111 113456788888999998776665443
No 25
>PTZ00202 tuzin; Provisional
Probab=98.70 E-value=2.6e-06 Score=84.91 Aligned_cols=163 Identities=17% Similarity=0.238 Sum_probs=104.8
Q ss_pred ccCCcccccccHHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHH
Q 009411 144 SIKGYEAFESRMSTLNDVINALKN---PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (535)
Q Consensus 144 ~~~~~~~~~gR~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 220 (535)
.|++...|+||+.++..|...|.+ ...+++.|.|++|+|||||++.+..... + ..++++.. +..++++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHH
Confidence 456678999999999999998863 2346889999999999999999996654 1 13333333 67999999
Q ss_pred HHHHhCCCccCCCchHHHHHHHHHH----hc-CCcEEEEEeCCCCcccccc-----cCCCCCCCCeEEEEeecCchhh--
Q 009411 221 IADKLGLKFYEESESGRARKLCERL----KK-EKKILVILDDIWTNLDLEN-----VGIPFGVRGCRVLMTARSQDVL-- 288 (535)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l----~~-~~~~LlVlDdv~~~~~~~~-----~~~~~~~~gs~ilvTtR~~~v~-- 288 (535)
++.+||.+.. ....+....+.+.+ .. +++.+||+-=- +.+.+.. +.+.+...-|+|++---.+.+-
T Consensus 329 LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 329 VVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHHccchhheeeeeehHhhcchh
Confidence 9999998433 22234444444443 22 56667766422 2222211 1223334557777654333221
Q ss_pred hcccCCcceEecCCCCHHHHHHHHHHHh
Q 009411 289 SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (535)
Q Consensus 289 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (535)
....+....|.+++++.++|.+.-.+..
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1123445689999999999988876654
No 26
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.65 E-value=1.4e-06 Score=86.89 Aligned_cols=182 Identities=9% Similarity=0.091 Sum_probs=105.3
Q ss_pred CCcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHh
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL 225 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 225 (535)
.....++|++..++.+..++.....+.+.++|++|+||||+|+.+++.......-...+-++.+...... .....+..+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~i~~~ 92 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGID-VIRNKIKEF 92 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchH-HHHHHHHHH
Confidence 3456688999999999999987777778999999999999999999886433211111222222222211 111111111
Q ss_pred CCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccC--CCCCCCCeEEEEeecCch-hhhcccCCcceEec
Q 009411 226 GLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENVG--IPFGVRGCRVLMTARSQD-VLSSKMDCQNNFLI 300 (535)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~~~--~~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~l 300 (535)
....+ .....+-++++|+++... ....+. .......+.+|+++.... ...........+.+
T Consensus 93 ~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~ 158 (319)
T PRK00440 93 ARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRF 158 (319)
T ss_pred HhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeee
Confidence 10000 001235689999986542 122221 111133466777664332 21111123357899
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHH
Q 009411 301 GVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (535)
Q Consensus 301 ~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 343 (535)
.+++.++....+...+......- -.+....+++.++|.+--+
T Consensus 159 ~~l~~~ei~~~l~~~~~~~~~~i-~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 159 SPLKKEAVAERLRYIAENEGIEI-TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 99999999999988774322111 1346788999999987553
No 27
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.64 E-value=8.4e-07 Score=81.00 Aligned_cols=177 Identities=18% Similarity=0.190 Sum_probs=94.5
Q ss_pred cCCcccccccHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHH
Q 009411 145 IKGYEAFESRMSTLNDVINALK-----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (535)
Q Consensus 145 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 219 (535)
|....+|+|.++.+..+.-.+. ++....+.++|++|+||||||.-+++..... |. +.+.+.-....+
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~---~~sg~~i~k~~d--- 91 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FK---ITSGPAIEKAGD--- 91 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC--SCHH---
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eE---eccchhhhhHHH---
Confidence 4457789999988877654433 3457788999999999999999999998754 32 222211101111
Q ss_pred HHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc---------ccccC--CCCC------------CCCe
Q 009411 220 QIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD---------LENVG--IPFG------------VRGC 276 (535)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~---------~~~~~--~~~~------------~~gs 276 (535)
...+...+. ++-+|.+|.++.... .+... ...+ .+-+
T Consensus 92 ------------------l~~il~~l~--~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 92 ------------------LAAILTNLK--EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp ------------------HHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred ------------------HHHHHHhcC--CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 112222222 345777788865421 11110 0001 1234
Q ss_pred EEEEeecCchhhhcccCCcc-eEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHh
Q 009411 277 RVLMTARSQDVLSSKMDCQN-NFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (535)
Q Consensus 277 ~ilvTtR~~~v~~~~~~~~~-~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L 350 (535)
-|=.|||...+......... ..+++..+.+|-.++..+.+......-+ .+.+.+|+++|.|-|--..-+-..+
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~-~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEID-EDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE--HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcC-HHHHHHHHHhcCCChHHHHHHHHHH
Confidence 46668888765432223333 4589999999999999987753322222 4578999999999996554444433
No 28
>PLN03025 replication factor C subunit; Provisional
Probab=98.62 E-value=8e-07 Score=88.46 Aligned_cols=181 Identities=12% Similarity=0.097 Sum_probs=106.7
Q ss_pred CCcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcc-eEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFD-EVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
.....++|.++.++.|..++..++.+.+.++|++|+||||+|..+++...... |. .++-++.+...+.. ..+.++..
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~eln~sd~~~~~-~vr~~i~~ 87 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN-YKEAVLELNASDDRGID-VVRNKIKM 87 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccc-CccceeeecccccccHH-HHHHHHHH
Confidence 44567889998888888888777777788999999999999999998864321 21 22223333322222 22222222
Q ss_pred hCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc--ccccC--CCCCCCCeEEEEeecCc-hhhhcccCCcceEe
Q 009411 225 LGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD--LENVG--IPFGVRGCRVLMTARSQ-DVLSSKMDCQNNFL 299 (535)
Q Consensus 225 l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--~~~~~--~~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~ 299 (535)
+..... .+..++.-++|||+++.... ...+. .-.....+++++++... .+..........++
T Consensus 88 ~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 88 FAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred HHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 110000 00113467999999976532 11111 01113456677766543 22111122335799
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHH
Q 009411 300 IGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIA 342 (535)
Q Consensus 300 l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLa 342 (535)
+++++.++....+...+......-+ .+....|++.++|..-.
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i~-~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPYV-PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHH
Confidence 9999999999999887743221111 34578899999987643
No 29
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=2.2e-06 Score=85.63 Aligned_cols=194 Identities=14% Similarity=0.117 Sum_probs=114.3
Q ss_pred cCCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccC--cceEEEEEeCCCCCHHHHHHHH
Q 009411 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKL--FDEVVYAEVSQRPDVKKIQGQI 221 (535)
Q Consensus 145 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~--f~~~~wv~v~~~~~~~~~~~~i 221 (535)
|.....++|.++..+.+...+..+.. ..+.|+|+.|+||||+|..+++..-.... +... .....+......+.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 34566789999999999999886664 46889999999999999999987643110 1111 011111112233333
Q ss_pred HHHhC-------CCccC-------CCchHHHHHHHHHHh----cCCcEEEEEeCCCCccc------ccccCCCCCCCCeE
Q 009411 222 ADKLG-------LKFYE-------ESESGRARKLCERLK----KEKKILVILDDIWTNLD------LENVGIPFGVRGCR 277 (535)
Q Consensus 222 ~~~l~-------~~~~~-------~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~~------~~~~~~~~~~~gs~ 277 (535)
...-. .+.+. .-..+.+..+.+++. .+++-++|+|+++.... +..+..| +....-
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp-p~~~~f 174 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP-PARALF 174 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC-CCCceE
Confidence 22211 11001 111234555555554 25667999999986531 2222222 122333
Q ss_pred EEEeecCchhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHH
Q 009411 278 VLMTARSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (535)
Q Consensus 278 ilvTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 345 (535)
|++|++...+..........+.+.+++.++..+++.+...... -..+.+..|++.++|.|.....
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~ 239 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALL 239 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 5555554444333334446999999999999999988532211 1134567899999999975543
No 30
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=9e-07 Score=95.99 Aligned_cols=179 Identities=16% Similarity=0.216 Sum_probs=108.8
Q ss_pred CCcccccccHHHHHHHHHHhcCCCceE-EEEEcCCCCcHHHHHHHHHHHhccccC-------------------cceEEE
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVHM-IGAYGMAGVGKTMLVKEVARQAKADKL-------------------FDEVVY 205 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~~~~~~~~~~~-------------------f~~~~w 205 (535)
..+..++|.+..+..|.+++..+++.- +.++|+.|+||||+|+.+++....... |.-+++
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 445678999999999999988776654 589999999999999999987643211 111122
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCC--CCCCeE
Q 009411 206 AEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPF--GVRGCR 277 (535)
Q Consensus 206 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~ 277 (535)
+....... .+.++.+.+.+. .+++-++|||+++... ....+...+ +...++
T Consensus 93 idAas~~k---------------------VDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 93 VDAASRTK---------------------VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred eccccccC---------------------HHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 21111111 112222222221 2566799999997652 333321111 133455
Q ss_pred EEEee-cCchhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH-HHHHH
Q 009411 278 VLMTA-RSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI-AIVTI 346 (535)
Q Consensus 278 ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~ 346 (535)
+|++| ....+..........|++.+|+.++..+.+.+.+...... --.+.+..|++.++|.|- |+..+
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~-~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP-FEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55544 4444432223344789999999999999998877432111 113467889999999885 44443
No 31
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=1.2e-06 Score=86.98 Aligned_cols=174 Identities=14% Similarity=0.203 Sum_probs=109.6
Q ss_pred ccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhc----cccCcceEEEEEe-CCCCCHHHHHHHHH
Q 009411 149 EAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAK----ADKLFDEVVYAEV-SQRPDVKKIQGQIA 222 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~----~~~~f~~~~wv~v-~~~~~~~~~~~~i~ 222 (535)
..++|.+..++.+..++..+.. ....++|+.|+||||+|+.++...- ...|+|...|... +......+ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 4567888889999999886654 5668999999999999999998642 2346676556542 22233333 33333
Q ss_pred HHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCC--cccccccCCC--CCCCCeEEEEeecCchhh-hcccCCcce
Q 009411 223 DKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWT--NLDLENVGIP--FGVRGCRVLMTARSQDVL-SSKMDCQNN 297 (535)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~--~~~~~~~~~~--~~~~gs~ilvTtR~~~v~-~~~~~~~~~ 297 (535)
+.+...+. .+++-++|+|+++. ...+..+... -+..++.+|++|.+.... .........
T Consensus 83 ~~~~~~p~----------------~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKKPY----------------EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcCcc----------------cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 33322110 13456777777653 3334443211 125678888888665432 222334568
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHH
Q 009411 298 FLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIV 344 (535)
Q Consensus 298 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~ 344 (535)
+.+.++++++....+.+.... .. .+.+..++..++|.|.-+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~-~~----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYND-IK----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcC-CC----HHHHHHHHHHcCCCHHHHH
Confidence 999999999998888776531 11 2346788999999986543
No 32
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=6.7e-07 Score=93.87 Aligned_cols=197 Identities=12% Similarity=0.143 Sum_probs=110.4
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
..+..++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+.+.....+. +..--+. +..+......+.|...
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~~-~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGIT-AQPCGQCRACTEIDAG 90 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccCC-CCCCcccHHHHHHHcC
Confidence 4456789999999999999987765 45689999999999999999887643110 0000000 0001111111111110
Q ss_pred -----hCCCccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCCC--CCCeE-EEEeecCchhhhc
Q 009411 225 -----LGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPFG--VRGCR-VLMTARSQDVLSS 290 (535)
Q Consensus 225 -----l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~--~~gs~-ilvTtR~~~v~~~ 290 (535)
+..+.......+.+..+.+.+. .++.-++|+|+++... ..+.+...+. ..+++ |++||....+...
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 0000000111223333333332 2456799999998653 2333321111 33445 5555555555433
Q ss_pred ccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHH
Q 009411 291 KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (535)
Q Consensus 291 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 345 (535)
..+....+.+..++.++..+.+.+.+.......+ .+..+.|++.++|.|.-...
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d-~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE-VNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 3344568999999999999999887653222111 23567899999999864433
No 33
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=1.6e-06 Score=87.74 Aligned_cols=190 Identities=12% Similarity=0.146 Sum_probs=106.8
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
.....++|.+..++.+.+.+..++. ..+.++|+.|+||||+|+.+++......... ..++.......++...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~ 85 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKG 85 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcC
Confidence 3456788999999999988886654 5678999999999999999998764221110 0000000111111111
Q ss_pred hCCCc-----cCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEEEeecCc-hhhhc
Q 009411 225 LGLKF-----YEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLMTARSQ-DVLSS 290 (535)
Q Consensus 225 l~~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~ilvTtR~~-~v~~~ 290 (535)
..... ......+....+.+.+. .+++-++|+|+++... .++.+...+ +...+++|++|.+. .+...
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 00000 00011122333333322 1345699999997654 233321111 13456666666443 33222
Q ss_pred ccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHH
Q 009411 291 KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (535)
Q Consensus 291 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 343 (535)
..+....+++.+++.++..+.+...+......- -.+.+..|++.++|.|-.+
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i-~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESIDT-DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 233346899999999999999888664221111 1345778999999988543
No 34
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.57 E-value=5.3e-07 Score=78.47 Aligned_cols=121 Identities=19% Similarity=0.164 Sum_probs=72.7
Q ss_pred cccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC
Q 009411 152 ESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE 231 (535)
Q Consensus 152 ~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~ 231 (535)
.|++..+..+...+.....+.+.|+|++|+|||++++.+++..... -..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 3778889999988887667889999999999999999999987522 2346666655443322211111000
Q ss_pred CCchHHHHHHHHHHhcCCcEEEEEeCCCCc-----ccccc-cCCCCC----CCCeEEEEeecCch
Q 009411 232 ESESGRARKLCERLKKEKKILVILDDIWTN-----LDLEN-VGIPFG----VRGCRVLMTARSQD 286 (535)
Q Consensus 232 ~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~-----~~~~~-~~~~~~----~~gs~ilvTtR~~~ 286 (535)
............++.+||+||++.. ..+.. +..... ..+..||+||....
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111111246789999999853 11211 111111 35788888887663
No 35
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=2.6e-06 Score=89.26 Aligned_cols=196 Identities=13% Similarity=0.105 Sum_probs=111.0
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
.....++|.+..++.|..++..+.. ..+.++|++|+||||+|+.+++.....+.+...+|.|.+. ..+...
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~~~ 82 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVRRG 82 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHhcC
Confidence 3456788999999999888887665 4558999999999999999998765322222222222111 000000
Q ss_pred hCC-----CccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCCC--CCCeEEEEeec-Cchhhhc
Q 009411 225 LGL-----KFYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPFG--VRGCRVLMTAR-SQDVLSS 290 (535)
Q Consensus 225 l~~-----~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~--~~gs~ilvTtR-~~~v~~~ 290 (535)
... ........+.+..+.+.+. .+++-++|+|+++... .+..+...+. ...+.+|++|. ...+...
T Consensus 83 ~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 83 AHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162 (504)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChH
Confidence 000 0000111122233333221 1456799999997542 2333321111 23445555554 3333222
Q ss_pred ccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH-HHHHHHHHh
Q 009411 291 KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI-AIVTIARAL 350 (535)
Q Consensus 291 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~~~~L 350 (535)
.......+++.+++.++....+.+.+....... -.+.+..|++.++|.+- ++..+-.++
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 234456899999999999999998774222111 13467889999999885 444443333
No 36
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.54 E-value=2.4e-07 Score=87.82 Aligned_cols=91 Identities=14% Similarity=0.127 Sum_probs=63.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC--CCHHHHHHHH-----HHHhCCCccCC-CchHHH-H
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR--PDVKKIQGQI-----ADKLGLKFYEE-SESGRA-R 239 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i-----~~~l~~~~~~~-~~~~~~-~ 239 (535)
....++|.|++|+|||||++.+++..... +|+.++|+.+.+. .++.++++.+ +..++.+.... .....+ .
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 44678999999999999999999988765 8999999997766 6889999998 33333211110 000111 2
Q ss_pred HHHHHHhcCCcEEEEEeCCCC
Q 009411 240 KLCERLKKEKKILVILDDIWT 260 (535)
Q Consensus 240 ~l~~~l~~~~~~LlVlDdv~~ 260 (535)
........+++.++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 222222347899999999964
No 37
>PRK08727 hypothetical protein; Validated
Probab=98.53 E-value=1.9e-06 Score=81.62 Aligned_cols=168 Identities=16% Similarity=0.131 Sum_probs=98.5
Q ss_pred cccccccH-HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhC
Q 009411 148 YEAFESRM-STLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLG 226 (535)
Q Consensus 148 ~~~~~gR~-~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 226 (535)
..+|++.. ..+..+.....+.....+.|+|.+|+|||.|++.+++....++ ..+.|+++.+ ....+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~--~~~~y~~~~~------~~~~~----- 84 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG--RSSAYLPLQA------AAGRL----- 84 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEeHHH------hhhhH-----
Confidence 34455433 3344333333334445699999999999999999998865432 3456766432 11111
Q ss_pred CCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc---cccc-cCCCCC---CCCeEEEEeecCchhh--------hcc
Q 009411 227 LKFYEESESGRARKLCERLKKEKKILVILDDIWTNL---DLEN-VGIPFG---VRGCRVLMTARSQDVL--------SSK 291 (535)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---~~~~-~~~~~~---~~gs~ilvTtR~~~v~--------~~~ 291 (535)
....+.+. +.-+||+||+.... .+.. +...++ ..|..||+||+...-. ...
T Consensus 85 ------------~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SR 150 (233)
T PRK08727 85 ------------RDALEALE--GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSR 150 (233)
T ss_pred ------------HHHHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHH
Confidence 12223333 34699999996432 2221 111111 3466799999864321 011
Q ss_pred cCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHH
Q 009411 292 MDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (535)
Q Consensus 292 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 343 (535)
......+++++++.++-.+++.+.+....-. --.+....|++.++|..-.+
T Consensus 151 l~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~-l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 151 LAQCIRIGLPVLDDVARAAVLRERAQRRGLA-LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HhcCceEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhCCCCHHHH
Confidence 2234589999999999999999876421111 11346778899988766544
No 38
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=2.6e-06 Score=88.86 Aligned_cols=192 Identities=12% Similarity=0.108 Sum_probs=107.4
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCcce-EEEEEeCCCCCHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDE-VVYAEVSQRPDVKKIQGQIAD 223 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i~~ 223 (535)
.....++|.+..+..|...+..++. +.+.++|+.|+||||+|+.+++.......... --+.. +........+..
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~----C~~C~~C~~i~~ 93 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT----CEQCTNCISFNN 93 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC----CCCChHHHHHhc
Confidence 3456788999999988887776553 67889999999999999999987643211100 00000 000011111111
Q ss_pred HhCCCc-----cCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEE-EeecCchhhh
Q 009411 224 KLGLKF-----YEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVL-MTARSQDVLS 289 (535)
Q Consensus 224 ~l~~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~il-vTtR~~~v~~ 289 (535)
...... ......+.+..+.+... .+++-++|+|+++... .+..+...+ +...+.+| +||+...+..
T Consensus 94 ~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~ 173 (507)
T PRK06645 94 HNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPA 173 (507)
T ss_pred CCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhH
Confidence 000000 00111222333333321 2456799999998643 344332111 13455555 4555555433
Q ss_pred cccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHH
Q 009411 290 SKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIA 342 (535)
Q Consensus 290 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLa 342 (535)
........+++.+++.++....+.+.+.......+ .+....|++.++|.+--
T Consensus 174 tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie-~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 174 TIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD-IEALRIIAYKSEGSARD 225 (507)
T ss_pred HHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHH
Confidence 23334467999999999999999988853222211 34567899999998743
No 39
>PF13173 AAA_14: AAA domain
Probab=98.53 E-value=2.8e-07 Score=78.61 Aligned_cols=119 Identities=21% Similarity=0.195 Sum_probs=76.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 249 (535)
.+++.|.|+.|+|||||+++++.+.. ....++|++..+.........+ ....+.+... ++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~~-~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELIK-PG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhhc-cC
Confidence 47899999999999999999998765 2345677766553321100000 1122222222 35
Q ss_pred cEEEEEeCCCCcccccccCCCCC--CCCeEEEEeecCchhhhc-----ccCCcceEecCCCCHHHH
Q 009411 250 KILVILDDIWTNLDLENVGIPFG--VRGCRVLMTARSQDVLSS-----KMDCQNNFLIGVLNESEA 308 (535)
Q Consensus 250 ~~LlVlDdv~~~~~~~~~~~~~~--~~gs~ilvTtR~~~v~~~-----~~~~~~~~~l~~L~~~ea 308 (535)
+.+|+||++....+|......+. .+..+|++|+.+...... ..+....+++.||+..|-
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 78999999988877766432222 346899999988765421 223445789999998763
No 40
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.52 E-value=3.2e-07 Score=83.63 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=34.5
Q ss_pred cccccHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 150 AFESRMSTLNDVINALK---NPDVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
.|+||+++++++...+. ....+.+.|+|++|+|||+|.+.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999993 4557899999999999999999999887765
No 41
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.52 E-value=1.2e-06 Score=95.14 Aligned_cols=172 Identities=20% Similarity=0.291 Sum_probs=99.5
Q ss_pred CCcccccccHHHHH---HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLN---DVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (535)
Q Consensus 146 ~~~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 222 (535)
.....|+|.+..+. .+...+..+....+.++|++|+||||||+.+++.... +|. .++... ....++ +++
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f~---~lna~~-~~i~di-r~~- 96 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA--HFS---SLNAVL-AGVKDL-RAE- 96 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC--cce---eehhhh-hhhHHH-HHH-
Confidence 44567889888774 4666666777778899999999999999999987642 231 111110 011110 111
Q ss_pred HHhCCCccCCCchHHHHHHHHHHh-cCCcEEEEEeCCCCcc--cccccCCCCCCCCeEEEEe--ecCch--hhhcccCCc
Q 009411 223 DKLGLKFYEESESGRARKLCERLK-KEKKILVILDDIWTNL--DLENVGIPFGVRGCRVLMT--ARSQD--VLSSKMDCQ 295 (535)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~~--~~~~~~~~~~~~gs~ilvT--tR~~~--v~~~~~~~~ 295 (535)
.....+.+. .+++.+|+|||++... ..+.+ .+.-..|+.++|+ |.+.. +........
T Consensus 97 ---------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaL-L~~lE~g~IiLI~aTTenp~~~l~~aL~SR~ 160 (725)
T PRK13341 97 ---------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDAL-LPWVENGTITLIGATTENPYFEVNKALVSRS 160 (725)
T ss_pred ---------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHH-HHHhcCceEEEEEecCCChHhhhhhHhhccc
Confidence 111111121 1356799999997542 33333 2222345555553 33321 111122234
Q ss_pred ceEecCCCCHHHHHHHHHHHhCC------CCCCchhHHHHHHHHHHcCCChH
Q 009411 296 NNFLIGVLNESEARDLFKKLVGD------KIENNDLKSLAMNIVKACRGLPI 341 (535)
Q Consensus 296 ~~~~l~~L~~~ea~~Lf~~~~~~------~~~~~~l~~~~~~i~~~~~GlPL 341 (535)
..+.+++|+.++...++.+.+.. .....--.+....|++.+.|..-
T Consensus 161 ~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 161 RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 57999999999999999886631 11111123456788999988753
No 42
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.51 E-value=1.3e-06 Score=83.93 Aligned_cols=172 Identities=15% Similarity=0.227 Sum_probs=108.5
Q ss_pred ccccccHHHHH---HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHh
Q 009411 149 EAFESRMSTLN---DVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL 225 (535)
Q Consensus 149 ~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 225 (535)
.+++|.++.+. -|.+.+..+..+.+.+||++|+||||||+.+....+... ..||..|....-..-.+.|+++-
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHH
Confidence 34445444332 233445577788999999999999999999998876443 55787776554444444444332
Q ss_pred CCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccCCCCCCCCeEEEE--eecCchhh--hcccCCcceEe
Q 009411 226 GLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENVGIPFGVRGCRVLM--TARSQDVL--SSKMDCQNNFL 299 (535)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~~~~~~~~~gs~ilv--TtR~~~v~--~~~~~~~~~~~ 299 (535)
. ......++|.+|.+|.|+.-. +-+.+ +|.-.+|.-++| ||.++... ........++.
T Consensus 214 q---------------~~~~l~krkTilFiDEiHRFNksQQD~f-LP~VE~G~I~lIGATTENPSFqln~aLlSRC~Vfv 277 (554)
T KOG2028|consen 214 Q---------------NEKSLTKRKTILFIDEIHRFNKSQQDTF-LPHVENGDITLIGATTENPSFQLNAALLSRCRVFV 277 (554)
T ss_pred H---------------HHHhhhcceeEEEeHHhhhhhhhhhhcc-cceeccCceEEEecccCCCccchhHHHHhccceeE
Confidence 1 111223688999999997543 33333 665577876666 66665432 22334557999
Q ss_pred cCCCCHHHHHHHHHHHh---CC------CCCCc---hhHHHHHHHHHHcCCCh
Q 009411 300 IGVLNESEARDLFKKLV---GD------KIENN---DLKSLAMNIVKACRGLP 340 (535)
Q Consensus 300 l~~L~~~ea~~Lf~~~~---~~------~~~~~---~l~~~~~~i~~~~~GlP 340 (535)
|++|..++...++.+.. ++ ..+++ -...+.+-++..|.|-.
T Consensus 278 LekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 278 LEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred eccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 99999999999998743 21 11121 12346667788888865
No 43
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.49 E-value=3.4e-06 Score=79.93 Aligned_cols=165 Identities=16% Similarity=0.130 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCch
Q 009411 156 STLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESES 235 (535)
Q Consensus 156 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~ 235 (535)
..+..+..+....+.+.+.|+|++|+|||+|++.+++..... -..+.|+++.....
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~---------------------- 86 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW---------------------- 86 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh----------------------
Confidence 344555555445555789999999999999999999876533 23456666543110
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCc---cccccc-CCCCC---CCC-eEEEEeecCchhh--------hcccCCcceEe
Q 009411 236 GRARKLCERLKKEKKILVILDDIWTN---LDLENV-GIPFG---VRG-CRVLMTARSQDVL--------SSKMDCQNNFL 299 (535)
Q Consensus 236 ~~~~~l~~~l~~~~~~LlVlDdv~~~---~~~~~~-~~~~~---~~g-s~ilvTtR~~~v~--------~~~~~~~~~~~ 299 (535)
....+.+.+.. --+|++||+... ..|+.. ...++ ..| .++|+||+...-. .........+.
T Consensus 87 -~~~~~~~~~~~--~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~ 163 (235)
T PRK08084 87 -FVPEVLEGMEQ--LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYK 163 (235)
T ss_pred -hhHHHHHHhhh--CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceee
Confidence 00112222221 248999999653 233321 11111 233 4799999865321 11223446899
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 009411 300 IGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIAR 348 (535)
Q Consensus 300 l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 348 (535)
++++++++-.+++.+.+....- .--+++...|++.+.|..-.+..+-.
T Consensus 164 l~~~~~~~~~~~l~~~a~~~~~-~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 164 LQPLSDEEKLQALQLRARLRGF-ELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred ecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 9999999999999886642211 11145788899999887655544433
No 44
>PRK09087 hypothetical protein; Validated
Probab=98.48 E-value=2.2e-06 Score=80.45 Aligned_cols=144 Identities=19% Similarity=0.124 Sum_probs=87.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (535)
..+.+.|+|++|+|||+|++.+++.... .|++.. ....++. ..+..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~--------------------~~~~~- 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAA--------------------NAAAE- 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHH--------------------Hhhhc-
Confidence 3467899999999999999998876432 244321 1111111 11111
Q ss_pred CcEEEEEeCCCCccc-ccccCCCC---CCCCeEEEEeecCchhh--------hcccCCcceEecCCCCHHHHHHHHHHHh
Q 009411 249 KKILVILDDIWTNLD-LENVGIPF---GVRGCRVLMTARSQDVL--------SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (535)
Q Consensus 249 ~~~LlVlDdv~~~~~-~~~~~~~~---~~~gs~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (535)
-+|++||+..... -+.+...+ ...|..+|+|++...-. .........+++++++.++-.+++.+.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 3788899964321 11111111 14577799998753211 1123445789999999999999999888
Q ss_pred CCCCCCchhHHHHHHHHHHcCCChHHHHHHHHH
Q 009411 317 GDKIENNDLKSLAMNIVKACRGLPIAIVTIARA 349 (535)
Q Consensus 317 ~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~ 349 (535)
....-. --+++...|++.+.|..-++..+-..
T Consensus 167 ~~~~~~-l~~ev~~~La~~~~r~~~~l~~~l~~ 198 (226)
T PRK09087 167 ADRQLY-VDPHVVYYLVSRMERSLFAAQTIVDR 198 (226)
T ss_pred HHcCCC-CCHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 532111 11457888999998887766654333
No 45
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=2e-06 Score=88.03 Aligned_cols=193 Identities=14% Similarity=0.130 Sum_probs=111.1
Q ss_pred CCcccccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVH-MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
.....++|.+..+..|..++..+... .+.++|+.|+||||+|+.+++.......... .......+ ...+...
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~~g 87 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEITKG 87 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHHcc
Confidence 44567899999999999988877654 5789999999999999999987643211100 00111111 1112111
Q ss_pred hCCCc---c--CCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCCC--CCCeEEE-EeecCchhhhc
Q 009411 225 LGLKF---Y--EESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPFG--VRGCRVL-MTARSQDVLSS 290 (535)
Q Consensus 225 l~~~~---~--~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~--~~gs~il-vTtR~~~v~~~ 290 (535)
..... + .....+.+..+.+.+. .++.-++|+|+++... .+..+...+. .....+| .||....+...
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 11110 0 0111222333333332 2456699999997553 3444321111 2344444 45554444333
Q ss_pred ccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH-HHHHH
Q 009411 291 KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI-AIVTI 346 (535)
Q Consensus 291 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~ 346 (535)
.......|.+.+++.++..+.+.+.+......- -.+....|++.++|.+- |+..+
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~-e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY-DQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCChHHHHHHHH
Confidence 334446799999999999999988764322211 13467889999999984 44333
No 46
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=4.3e-06 Score=88.19 Aligned_cols=190 Identities=11% Similarity=0.139 Sum_probs=108.6
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
.....++|.+...+.|..++..++. ..+.++|+.|+||||+|+.+++......... . ..++.....+.+...
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~------~-~pCg~C~sC~~I~~g 84 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVT------S-TPCEVCATCKAVNEG 84 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCC------C-CCCccCHHHHHHhcC
Confidence 4466789999999999999986664 5778999999999999999988754321110 0 011111111111110
Q ss_pred hCCC-----ccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEEEeecCc-hhhhc
Q 009411 225 LGLK-----FYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLMTARSQ-DVLSS 290 (535)
Q Consensus 225 l~~~-----~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~ilvTtR~~-~v~~~ 290 (535)
-... .......+.++.+..... .++.-++|+|+++... ....+...+ +..+.++|++|.+. .+...
T Consensus 85 ~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 85 RFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHH
Confidence 0000 000011222333333221 2456799999998653 222221111 13456677766553 22222
Q ss_pred ccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHH
Q 009411 291 KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (535)
Q Consensus 291 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 343 (535)
.......+++.+++.++....+.+.+......-+ .+....|++.++|.+-.+
T Consensus 165 IlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id-~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 165 VISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD-QDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 2344568999999999999999887753222211 345778999999987443
No 47
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=7.1e-06 Score=83.21 Aligned_cols=182 Identities=12% Similarity=0.065 Sum_probs=102.7
Q ss_pred cccccccHHHHHHHHHHhcCCC----------ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHH
Q 009411 148 YEAFESRMSTLNDVINALKNPD----------VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKI 217 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 217 (535)
...++|.+..++.|..++..+. ...+.++|++|+|||++|..+++...-...- ...++....
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--------~~~Cg~C~~ 75 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--------EPGCGECRA 75 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--------CCCCCCCHH
Confidence 3467898998999988887543 4668899999999999999998764321100 000000011
Q ss_pred HHHHHHHhCCC-----cc-CCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccc----ccCCCCCCCCeEEEEe
Q 009411 218 QGQIADKLGLK-----FY-EESESGRARKLCERLK----KEKKILVILDDIWTNL--DLE----NVGIPFGVRGCRVLMT 281 (535)
Q Consensus 218 ~~~i~~~l~~~-----~~-~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~----~~~~~~~~~gs~ilvT 281 (535)
.+.+...-... .+ .....+.+..+.+.+. .+++-++|+|+++... ... .+..| ..++.+|++
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep--~~~~~fIL~ 153 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP--PPRTVWLLC 153 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC--CCCCeEEEE
Confidence 11111000000 00 0011122333333332 1345688889997652 222 22222 345555555
Q ss_pred ecCc-hhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHH
Q 009411 282 ARSQ-DVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (535)
Q Consensus 282 tR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 345 (535)
|.+. .+..........+.+.+++.++..+.+....+. . .+.+..+++.++|.|.....
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~---~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D---PETARRAARASQGHIGRARR 212 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C---HHHHHHHHHHcCCCHHHHHH
Confidence 5553 443333344568999999999999888754431 1 23577899999999965433
No 48
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=9.5e-06 Score=85.27 Aligned_cols=181 Identities=14% Similarity=0.233 Sum_probs=107.5
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccc-------------------CcceEEE
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADK-------------------LFDEVVY 205 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~-------------------~f~~~~w 205 (535)
..+..++|.+..++.|...+..+.. ..+.++|+.|+||||+|+.+++...... .|...++
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3456788999999999998886554 4578999999999999999998654211 1222233
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCC--CCCCeE
Q 009411 206 AEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPF--GVRGCR 277 (535)
Q Consensus 206 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~ 277 (535)
+......... ....+.+.+. .+++-++|+|+++... ....+...+ +...+.
T Consensus 93 idaas~~gvd---------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 93 IDAASRTGVE---------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred eecccccCHH---------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 3222222211 1122222211 2456799999997543 233321111 123454
Q ss_pred EE-EeecCchhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh-HHHHHHHH
Q 009411 278 VL-MTARSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP-IAIVTIAR 348 (535)
Q Consensus 278 il-vTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP-Lai~~~~~ 348 (535)
+| +||....+..........+++.+++.++....+.+.+....... -......|++.++|.+ .|+..+-.
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~-e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS-DEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55 45544433322234457899999999999888887664222111 1345678999999976 45555543
No 49
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=3.8e-06 Score=89.63 Aligned_cols=191 Identities=14% Similarity=0.164 Sum_probs=109.8
Q ss_pred CCcccccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVH-MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
..+..++|.+..++.|...+..++.. .+.++|+.|+||||+|+.+++.......+. +..+......+.|...
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g 85 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQG 85 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcC
Confidence 44667899999999999988876654 468999999999999999988754321110 0111111222222110
Q ss_pred hCC-----CccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccc----CCCCCCCCeE-EEEeecCchhh
Q 009411 225 LGL-----KFYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENV----GIPFGVRGCR-VLMTARSQDVL 288 (535)
Q Consensus 225 l~~-----~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~----~~~~~~~gs~-ilvTtR~~~v~ 288 (535)
-.. ........+.+..+.+.+. .+++-++|+|+++... ..+.+ ..| ...++ |++||....+.
T Consensus 86 ~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP--p~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 86 RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP--PEHVKFLLATTDPQKLP 163 (647)
T ss_pred CCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC--CCCeEEEEecCCccccc
Confidence 000 0000011223333333332 2466799999997653 22222 222 23444 44455545443
Q ss_pred hcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH-HHHHH
Q 009411 289 SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI-AIVTI 346 (535)
Q Consensus 289 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~ 346 (535)
.........|.+.+|+.++....+.+.+.......+ ......|++.++|.+- |+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e-~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE-PRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 323334578999999999999999887632211111 3456789999999875 44443
No 50
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.42 E-value=6.3e-06 Score=88.79 Aligned_cols=202 Identities=15% Similarity=0.122 Sum_probs=113.6
Q ss_pred CCcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCc---ceEEEEEeCCC---CCHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLF---DEVVYAEVSQR---PDVKKIQG 219 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f---~~~~wv~v~~~---~~~~~~~~ 219 (535)
.....++|+...+..+...+.......+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...+..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 3455688999999988888876667789999999999999999998876433222 12345544321 12222211
Q ss_pred HH---------------HHHhCCCc----------------c--CCCchHHHHHHHHHHhcCCcEEEEEeCCCCc--ccc
Q 009411 220 QI---------------ADKLGLKF----------------Y--EESESGRARKLCERLKKEKKILVILDDIWTN--LDL 264 (535)
Q Consensus 220 ~i---------------~~~l~~~~----------------~--~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~ 264 (535)
.+ +...+... + ..-+......+...+.. +++.++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~-~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLED-KRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhh-CeEEeecceeccCCcccc
Confidence 11 11111110 0 01122345566666653 5677776655543 235
Q ss_pred cccCCCCC--CCCeEEEE--eecCchhh-hcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 009411 265 ENVGIPFG--VRGCRVLM--TARSQDVL-SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (535)
Q Consensus 265 ~~~~~~~~--~~gs~ilv--TtR~~~v~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~Gl 339 (535)
..+...+. .+...+++ ||++.... .........+.+.+++.++.+.++.+.+......- -.++.+.|.+.+..-
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l-s~eal~~L~~ys~~g 388 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL-AAGVEELIARYTIEG 388 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHCCCcH
Confidence 54432222 23333444 55644321 11122334778999999999999999875321111 134555666666555
Q ss_pred hHHHHHHHHH
Q 009411 340 PIAIVTIARA 349 (535)
Q Consensus 340 PLai~~~~~~ 349 (535)
+-++..++..
T Consensus 389 Rraln~L~~~ 398 (615)
T TIGR02903 389 RKAVNILADV 398 (615)
T ss_pred HHHHHHHHHH
Confidence 6777766554
No 51
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=8.2e-06 Score=84.81 Aligned_cols=187 Identities=15% Similarity=0.179 Sum_probs=107.5
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccC-------------------cceEEE
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKL-------------------FDEVVY 205 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~-------------------f~~~~w 205 (535)
.....++|.+.....|...+..+.. ..+.++|++|+||||+|+.+++....... +..+..
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 4456789999888888888877666 45789999999999999999887543211 001222
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccCCCCC--CCCeEEEEe
Q 009411 206 AEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENVGIPFG--VRGCRVLMT 281 (535)
Q Consensus 206 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~~~~~~~--~~gs~ilvT 281 (535)
++.+...+..++ +++...... .-..+++-++|+|+++... ....+...+. ...+.+|++
T Consensus 91 l~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ila 153 (472)
T PRK14962 91 LDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLA 153 (472)
T ss_pred EeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 222222222211 122211110 0011356799999997542 2222211111 234444444
Q ss_pred ecC-chhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC-hHHHHHHHHHh
Q 009411 282 ARS-QDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL-PIAIVTIARAL 350 (535)
Q Consensus 282 tR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~Gl-PLai~~~~~~L 350 (535)
|.+ ..+..........+.+.+++.++....+.+.+......- -.+....|++.++|. +.++..+-.+.
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i-~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI-DREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 433 333333334456899999999999999988774221111 134577888888654 67777766544
No 52
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=1e-05 Score=81.41 Aligned_cols=194 Identities=13% Similarity=0.060 Sum_probs=111.9
Q ss_pred cCCcccccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhccccCcceEE----EEEeCCCCCHHHHHH
Q 009411 145 IKGYEAFESRMSTLNDVINALKNPDVH-MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVV----YAEVSQRPDVKKIQG 219 (535)
Q Consensus 145 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~----wv~v~~~~~~~~~~~ 219 (535)
|.....++|.+...+.|.+.+..+... .+.++|+.|+||+|+|..+++..--+....... -.+.. .+......+
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~c~ 93 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPVAR 93 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChHHH
Confidence 344567899999999999998877654 588999999999999999988753321110000 00000 000011112
Q ss_pred HHHHHhCCC-------ccC-------CCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccc----cCCCCCCCC
Q 009411 220 QIADKLGLK-------FYE-------ESESGRARKLCERLK----KEKKILVILDDIWTNL--DLEN----VGIPFGVRG 275 (535)
Q Consensus 220 ~i~~~l~~~-------~~~-------~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~----~~~~~~~~g 275 (535)
.+...-..+ .++ .-..+.+..+.+.+. .+++-++|+|+++..+ .... +..| ..+
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep--p~~ 171 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP--PAR 171 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC--CCC
Confidence 221111000 000 011234455555543 2466799999997543 2222 2222 345
Q ss_pred eEEEEeecCc-hhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 009411 276 CRVLMTARSQ-DVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (535)
Q Consensus 276 s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 346 (535)
+.+|++|.+. .+..........+.+.+++.++..+++........ ......+++.++|.|+....+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 6666666655 33333344457899999999999999988653211 112267899999999855443
No 53
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.41 E-value=7.6e-06 Score=83.08 Aligned_cols=172 Identities=19% Similarity=0.264 Sum_probs=100.8
Q ss_pred CcccccccHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 147 GYEAFESRMSTLNDVINALK----N---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
.+..+.|.++.+++|.+.+. . ...+-+.|+|++|+|||++|+.+++..... | +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecch---
Confidence 34567899999988887663 1 124568899999999999999999876532 3 22211
Q ss_pred HHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc----------------cccccCC---CC-CC
Q 009411 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------DLENVGI---PF-GV 273 (535)
Q Consensus 214 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------------~~~~~~~---~~-~~ 273 (535)
..+.... ++ ........+.+......+.+|+||+++... .+..+.. .+ ..
T Consensus 190 -~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 -SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred -HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111111 10 011223334444444567899999986431 0111110 01 13
Q ss_pred CCeEEEEeecCchhhhcc-c---CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 009411 274 RGCRVLMTARSQDVLSSK-M---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (535)
Q Consensus 274 ~gs~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP 340 (535)
.+.+||.||......... . .....+.++..+.++..++|+.++.......+. ....+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 467788888765332111 1 223578999999999999999887533222211 1456777777753
No 54
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.40 E-value=1e-06 Score=87.27 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=65.9
Q ss_pred HHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC--CHHHHHHHHHHHhCCCccCCCchH-
Q 009411 161 VINALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP--DVKKIQGQIADKLGLKFYEESESG- 236 (535)
Q Consensus 161 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~~- 236 (535)
+++.+. =...+...|+|++|+|||||++.+|+....+ +|+.++||.+.+.. .+.++++.+...+-....+.+...
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~ 237 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERH 237 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHH
Confidence 344444 1234667899999999999999999998765 89999999998877 677777777532211111111111
Q ss_pred -----HHHHHHHHH-hcCCcEEEEEeCCCCc
Q 009411 237 -----RARKLCERL-KKEKKILVILDDIWTN 261 (535)
Q Consensus 237 -----~~~~l~~~l-~~~~~~LlVlDdv~~~ 261 (535)
.+-...+++ ..+++++|++|++...
T Consensus 238 ~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 238 VQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 111222222 3578999999999643
No 55
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=6.5e-06 Score=87.59 Aligned_cols=178 Identities=12% Similarity=0.198 Sum_probs=106.4
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccC-------------------cceEEE
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKL-------------------FDEVVY 205 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~-------------------f~~~~w 205 (535)
..+..++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++....... |..++.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlE 92 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLE 92 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEE
Confidence 4466789999999999999987664 46789999999999999999886432211 111122
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHH----hcCCcEEEEEeCCCCccc--ccccCCCC--CCCCeE
Q 009411 206 AEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERL----KKEKKILVILDDIWTNLD--LENVGIPF--GVRGCR 277 (535)
Q Consensus 206 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~~~~LlVlDdv~~~~~--~~~~~~~~--~~~gs~ 277 (535)
+....... .+.+..+.... ..+++-++|+|+++.... ...+...+ ....++
T Consensus 93 idaAs~~g---------------------Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 93 IDAASNTG---------------------IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred EeccccCC---------------------HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 22111111 12222232221 114567999999976432 22221111 133556
Q ss_pred EEEeecCc-hhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHH
Q 009411 278 VLMTARSQ-DVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (535)
Q Consensus 278 ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 345 (535)
+|++|.+. .+.....+....+.+.+++.++....+.+.+......-+ ......|++.++|.+.-+..
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id-~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE-PPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHhCCCHHHHHH
Confidence 66666443 332222233357888899999999999887753222111 34678999999998844433
No 56
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.39 E-value=9.9e-06 Score=77.53 Aligned_cols=188 Identities=19% Similarity=0.201 Sum_probs=116.2
Q ss_pred HHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhcccc----CcceEEEEEeCCCCCHHHHHHHHHHHhCC
Q 009411 155 MSTLNDVINALK---NPDVHMIGAYGMAGVGKTMLVKEVARQAKADK----LFDEVVYAEVSQRPDVKKIQGQIADKLGL 227 (535)
Q Consensus 155 ~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 227 (535)
.+.++.|.+.+. ....+-+.|+|.+|+|||++++.+...+.... .--.++.|.....++...+...|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 344566666555 34567899999999999999999998764321 11248888899999999999999999999
Q ss_pred CccCCCchHH-HHHHHHHHhcCCcEEEEEeCCCCcc------------cccccCCCCCCCCeEEEEeecCchhhhc----
Q 009411 228 KFYEESESGR-ARKLCERLKKEKKILVILDDIWTNL------------DLENVGIPFGVRGCRVLMTARSQDVLSS---- 290 (535)
Q Consensus 228 ~~~~~~~~~~-~~~l~~~l~~~~~~LlVlDdv~~~~------------~~~~~~~~~~~~gs~ilvTtR~~~v~~~---- 290 (535)
+......... .....+.+..-+--+||+|.+++.. .++.++.. -.=+-|.+-|+...-+-.
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne--L~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE--LQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc--cCCCeEEeccHHHHHHhccCHH
Confidence 8765443333 3334455544455799999997641 12222111 122345565554332200
Q ss_pred ccCCcceEecCCCCH-HHHHHHHHHHh---C-CCCCCchhHHHHHHHHHHcCCChHHHH
Q 009411 291 KMDCQNNFLIGVLNE-SEARDLFKKLV---G-DKIENNDLKSLAMNIVKACRGLPIAIV 344 (535)
Q Consensus 291 ~~~~~~~~~l~~L~~-~ea~~Lf~~~~---~-~~~~~~~l~~~~~~i~~~~~GlPLai~ 344 (535)
..+....+.++.... ++...|+...- . .....-...++++.|...++|+.--+.
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 112234666666553 34455554432 1 222233446789999999999865443
No 57
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=6.1e-06 Score=86.65 Aligned_cols=179 Identities=13% Similarity=0.214 Sum_probs=106.2
Q ss_pred CCcccccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhccccC-------------------cceEEE
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVH-MIGAYGMAGVGKTMLVKEVARQAKADKL-------------------FDEVVY 205 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~~-------------------f~~~~w 205 (535)
..+..++|-+..++.|.+++..+... .+.++|+.|+||||+|+.+++....... |..++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 44667899999999999999876654 5689999999999999999987543211 111233
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccc----cCCCCCCCCeEEE
Q 009411 206 AEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLEN----VGIPFGVRGCRVL 279 (535)
Q Consensus 206 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~----~~~~~~~~gs~il 279 (535)
+..+....+.++ ++++..+... -..++.-++|+|+++... .... +..| ...+++|
T Consensus 93 idaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep--p~~~~fI 153 (509)
T PRK14958 93 VDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP--PSHVKFI 153 (509)
T ss_pred EcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhcc--CCCeEEE
Confidence 332222222221 2222222110 012455689999998642 2222 2222 3456666
Q ss_pred Eeec-CchhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHH
Q 009411 280 MTAR-SQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIV 344 (535)
Q Consensus 280 vTtR-~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~ 344 (535)
++|. ...+..........+++.+++.++....+.+.+.......+ ......|++.++|.+--+.
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~-~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE-NAALDLLARAANGSVRDAL 218 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHHH
Confidence 5553 33332222233467889999999988887776642221111 2346788999999875443
No 58
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=1.2e-05 Score=83.31 Aligned_cols=174 Identities=11% Similarity=0.146 Sum_probs=107.1
Q ss_pred CCcccccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhccc-------------------cCcceEEE
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVH-MIGAYGMAGVGKTMLVKEVARQAKAD-------------------KLFDEVVY 205 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~-------------------~~f~~~~w 205 (535)
..+.+++|.+..++.|.+.+..+... .+.++|+.|+||||+|+.++...... +.+..++.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 44667899999999888888866654 78999999999999999998753211 01112333
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccc----CCCCCCCC
Q 009411 206 AEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENV----GIPFGVRG 275 (535)
Q Consensus 206 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~----~~~~~~~g 275 (535)
++.+...++.+ +..+.+... .++.-++|+|+++... ..+.+ ..| .+.
T Consensus 90 idaas~~~vdd---------------------IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP--p~~ 146 (491)
T PRK14964 90 IDAASNTSVDD---------------------IKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP--APH 146 (491)
T ss_pred EecccCCCHHH---------------------HHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC--CCC
Confidence 43333222222 222222221 1355689999997542 22222 222 345
Q ss_pred eEEEEee-cCchhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHH
Q 009411 276 CRVLMTA-RSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (535)
Q Consensus 276 s~ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 343 (535)
+++|++| ....+..........+.+.+++.++....+.+.+......-+ .+....|++.++|.+-.+
T Consensus 147 v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~-~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 147 VKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD-EESLKLIAENSSGSMRNA 214 (491)
T ss_pred eEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 6555555 444443323344568999999999999999988753222211 345678999999987533
No 59
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=7.5e-06 Score=86.17 Aligned_cols=195 Identities=13% Similarity=0.140 Sum_probs=108.1
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
.....++|++..++.+.+++..+.. +.+.++|+.|+||||+|+.+++...... |... ..++.....+.+...
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESINTN 85 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHHcC
Confidence 4456788999999999999876554 5788999999999999999998764321 1110 111111222222111
Q ss_pred hCCCc---c--CCCchHHHHHHHHHHh----cCCcEEEEEeCCCCc--ccccccCCCC--CCCCeEEEE-eecCchhhhc
Q 009411 225 LGLKF---Y--EESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPF--GVRGCRVLM-TARSQDVLSS 290 (535)
Q Consensus 225 l~~~~---~--~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~~~~~~--~~~gs~ilv-TtR~~~v~~~ 290 (535)
..... + .....+.++.+..... .+++-++|+|+++.. ..+..+...+ +...+.+|+ |+....+...
T Consensus 86 ~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 86 QSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 11000 0 0011122233333221 123447999999754 2333331111 123455554 4444333322
Q ss_pred ccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh-HHHHHHHH
Q 009411 291 KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP-IAIVTIAR 348 (535)
Q Consensus 291 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP-Lai~~~~~ 348 (535)
.......+++.+++.++....+...+......-+ .+.+..|++.++|.+ .|+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is-~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE-DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2334568999999999999999887642211111 335778999999976 45544444
No 60
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=6.3e-06 Score=84.49 Aligned_cols=197 Identities=13% Similarity=0.122 Sum_probs=109.4
Q ss_pred CCcccccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEE-eCCCCCHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVH-MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAE-VSQRPDVKKIQGQIAD 223 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~i~~ 223 (535)
.....++|.+..++.|..++.++..+ .+.++|+.|+||||+|..+++.......+....|.. ....+......+.+..
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhc
Confidence 34567889999999998988876664 488999999999999999998764322111111110 0111111122222221
Q ss_pred HhCCCc-----cCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEEEee-cCchhhh
Q 009411 224 KLGLKF-----YEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLMTA-RSQDVLS 289 (535)
Q Consensus 224 ~l~~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~ilvTt-R~~~v~~ 289 (535)
....+. ......+.+..+.+.+. .+++-++|+|+++... .+..+...+ +.+.+.+|++| +...+..
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 111110 01111233444444442 1355689999997543 333331111 13456655554 4443332
Q ss_pred cccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHH
Q 009411 290 SKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (535)
Q Consensus 290 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 343 (535)
........+++.+++.++....+...+...... --.+.+..|++.++|.+--+
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~-i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS-VDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 222233578999999999998888876322111 11346789999999987533
No 61
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.2e-05 Score=85.62 Aligned_cols=195 Identities=11% Similarity=0.124 Sum_probs=109.4
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCc--ceEEEEEeCCCCCHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLF--DEVVYAEVSQRPDVKKIQGQIA 222 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f--~~~~wv~v~~~~~~~~~~~~i~ 222 (535)
..+..++|.+..+..|.+++..++. ..+.++|+.|+||||+|+.+++........ .+... ..++.....+.|.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~ 88 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDID 88 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHH
Confidence 4456788999999999999887665 566899999999999999998765421110 00000 1111112222221
Q ss_pred HHhCCC-----ccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCCC--CCCeEEEEee-cCchhh
Q 009411 223 DKLGLK-----FYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPFG--VRGCRVLMTA-RSQDVL 288 (535)
Q Consensus 223 ~~l~~~-----~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~--~~gs~ilvTt-R~~~v~ 288 (535)
..-... .......+.+..+.+... .++.-++|||+++... ....+...+. ...+++|++| ....+.
T Consensus 89 ~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 89 SGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred cCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 100000 000111223333333322 1345589999998653 2333321111 3445555554 444443
Q ss_pred hcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHH
Q 009411 289 SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (535)
Q Consensus 289 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 345 (535)
.........+.+.+++.++....+.+.+.......+ .+....|++.++|.+--+..
T Consensus 169 ~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie-~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE-PQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 223344578999999999999999887743222111 34577899999998744433
No 62
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.36 E-value=6.9e-06 Score=77.63 Aligned_cols=163 Identities=12% Similarity=0.117 Sum_probs=93.3
Q ss_pred HHHHHHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCch
Q 009411 157 TLNDVINALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESES 235 (535)
Q Consensus 157 ~~~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~ 235 (535)
.+..+.++.. ....+.+.|+|.+|+|||+||+.+++.....+ ....+++..... ..+
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~~------~~~-------------- 85 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG--RNARYLDAASPL------LAF-------------- 85 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHHhH------HHH--------------
Confidence 3344444433 23456788999999999999999998764321 234455433211 000
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCccccc--ccCCCCC---CCCe-EEEEeecCchhhhc-------ccCCcceEecCC
Q 009411 236 GRARKLCERLKKEKKILVILDDIWTNLDLE--NVGIPFG---VRGC-RVLMTARSQDVLSS-------KMDCQNNFLIGV 302 (535)
Q Consensus 236 ~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~--~~~~~~~---~~gs-~ilvTtR~~~v~~~-------~~~~~~~~~l~~ 302 (535)
... ...-+||+||+....... .+...+. ..+. .+|+|++....... .......+.+++
T Consensus 86 -------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~p 156 (227)
T PRK08903 86 -------DFD--PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKP 156 (227)
T ss_pred -------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecC
Confidence 111 123578999996543211 1211111 2333 46666665432110 112236899999
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhh
Q 009411 303 LNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALR 351 (535)
Q Consensus 303 L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~ 351 (535)
++.++-..++.+.+......- -++....|++.+.|++..+..+...|.
T Consensus 157 l~~~~~~~~l~~~~~~~~v~l-~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 157 LSDADKIAALKAAAAERGLQL-ADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred CCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 999887777776543211111 134677888999999988877766553
No 63
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.34 E-value=2e-05 Score=79.95 Aligned_cols=183 Identities=14% Similarity=0.146 Sum_probs=106.5
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccc--------------------CcceEE
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADK--------------------LFDEVV 204 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~--------------------~f~~~~ 204 (535)
.....++|.+..++.+.+++..+.. ..+.++|++|+||||+|+.+........ +++. .
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-I 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-E
Confidence 3455678999999999998886654 4678999999999999999987753211 2221 2
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCc--ccccccCC--CCCCCCeEEEE
Q 009411 205 YAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENVGI--PFGVRGCRVLM 280 (535)
Q Consensus 205 wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~~~~--~~~~~gs~ilv 280 (535)
++..+..... +..+++...+...+ . .+++-++|+|+++.. .....+.. ..+...+.+|+
T Consensus 90 ~~~~~~~~~~-~~~~~l~~~~~~~p---------------~-~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 90 EIDAASNNGV-DDIREILDNVKYAP---------------S-SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred EeeccccCCH-HHHHHHHHHHhcCc---------------c-cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 2222211111 11222222221100 0 134568999998654 22222211 11134566666
Q ss_pred eecCch-hhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 009411 281 TARSQD-VLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIA 347 (535)
Q Consensus 281 TtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 347 (535)
+|.+.. +..........+++.+++.++....+...+.......+ .+.+..|++.++|.|..+....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~-~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE-DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCChHHHHHHH
Confidence 665443 22222233457889999999999999887642211111 3467889999999986554443
No 64
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.2e-05 Score=85.05 Aligned_cols=177 Identities=14% Similarity=0.233 Sum_probs=105.8
Q ss_pred CCcccccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhcccc-------------------CcceEEE
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVH-MIGAYGMAGVGKTMLVKEVARQAKADK-------------------LFDEVVY 205 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~-------------------~f~~~~w 205 (535)
..+..++|.+..++.|..++..++.. .+.++|+.|+||||+|+.++....... .|..+++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 34567889999999999998876654 568999999999999999988754211 0111222
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCccc--cc----ccCCCCCCCC
Q 009411 206 AEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTNLD--LE----NVGIPFGVRG 275 (535)
Q Consensus 206 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~~--~~----~~~~~~~~~g 275 (535)
+..+.... .+.+..+..... .+++-++|+|+++.... .. .+..| ...
T Consensus 93 i~~~~~~~---------------------vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep--p~~ 149 (527)
T PRK14969 93 VDAASNTQ---------------------VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP--PEH 149 (527)
T ss_pred eeccccCC---------------------HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC--CCC
Confidence 22211111 122223333221 24567999999976532 22 22222 345
Q ss_pred eEEEEee-cCchhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH-HHHHH
Q 009411 276 CRVLMTA-RSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI-AIVTI 346 (535)
Q Consensus 276 s~ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~ 346 (535)
+.+|++| ....+..........+++.+++.++....+.+.+.......+ ......|++.++|.+- |+..+
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~-~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD-ATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 5555555 433332111223468999999999999888887642221111 3456789999999774 44444
No 65
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.32 E-value=1e-05 Score=82.60 Aligned_cols=170 Identities=18% Similarity=0.273 Sum_probs=99.1
Q ss_pred cccccccHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH
Q 009411 148 YEAFESRMSTLNDVINALK----N---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 214 (535)
+..+.|++..++++.+.+. . ...+-|.++|++|+|||++|+.+++..... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh----
Confidence 4567899999888887653 1 235678899999999999999999876532 222221
Q ss_pred HHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc------------c----ccccC---CCC-CCC
Q 009411 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL------------D----LENVG---IPF-GVR 274 (535)
Q Consensus 215 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~----~~~~~---~~~-~~~ 274 (535)
.++.... .+ ........+.+......+.+|+||+++... . +..+. ..+ ...
T Consensus 199 ~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 199 SELVQKF---IG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHHhHhh---cc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 1111111 00 111223344444444567899999997431 0 11111 011 134
Q ss_pred CeEEEEeecCchhhhcc-c---CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 009411 275 GCRVLMTARSQDVLSSK-M---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (535)
Q Consensus 275 gs~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~Gl 339 (535)
+..||.||......... . .-...+.+++.+.++-.++|+.++.......+. ....+++.+.|.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~ 336 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGA 336 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCC
Confidence 56788788765432111 1 123579999999999999999887532222111 134566777664
No 66
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=1.4e-05 Score=88.11 Aligned_cols=190 Identities=11% Similarity=0.078 Sum_probs=105.7
Q ss_pred CCcccccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVH-MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
..+..++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+++.....+.... ..+......+.|...
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~g 84 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAPG 84 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHcC
Confidence 34567889999999999999876654 5789999999999999999887643211100 000001111111100
Q ss_pred hC-------CCccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCCC--CCCeEEEEee-cCchhh
Q 009411 225 LG-------LKFYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPFG--VRGCRVLMTA-RSQDVL 288 (535)
Q Consensus 225 l~-------~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~--~~gs~ilvTt-R~~~v~ 288 (535)
-. .........+.++.+.+.+. .++.-++|||+++... ..+.|...+. ...+.+|++| ....+.
T Consensus 85 ~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 85 GPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred CCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 00 00000011222333332221 2455689999997652 2222211111 3455555444 444443
Q ss_pred hcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHH
Q 009411 289 SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (535)
Q Consensus 289 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 343 (535)
.........|++..++.++...++.+.+.......+ .+....|++.++|.+..+
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id-~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE-PGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 323344578999999999999998887642222111 234678999999988433
No 67
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.31 E-value=2.5e-05 Score=71.48 Aligned_cols=152 Identities=19% Similarity=0.158 Sum_probs=89.3
Q ss_pred HHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccc--------------------cCcceEEEEEeCC-CCCHHHHH
Q 009411 161 VINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKAD--------------------KLFDEVVYAEVSQ-RPDVKKIQ 218 (535)
Q Consensus 161 l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~--------------------~~f~~~~wv~v~~-~~~~~~~~ 218 (535)
+.+.+..+.. ..+.++|+.|+|||++|+.+.+..... .+.+. .++.... ....
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~---- 78 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV---- 78 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH----
Confidence 4455555554 678899999999999999998875432 11121 1221111 1111
Q ss_pred HHHHHHhCCCccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCC--CCCCCeEEEEeecCc-hhhh
Q 009411 219 GQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIP--FGVRGCRVLMTARSQ-DVLS 289 (535)
Q Consensus 219 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~--~~~~gs~ilvTtR~~-~v~~ 289 (535)
+.+..+.+.+. .+.+-++|+||++... ....+... -+...+.+|++|++. .+..
T Consensus 79 -----------------~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 79 -----------------DQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred -----------------HHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChH
Confidence 22222222221 1456789999997542 22222111 123455666666543 2222
Q ss_pred cccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH
Q 009411 290 SKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI 341 (535)
Q Consensus 290 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPL 341 (535)
........+.+.+++.++..+.+.+. + .+ .+.+..|++.++|.|.
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~-g--i~----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ-G--IS----EEAAELLLALAGGSPG 186 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc-C--CC----HHHHHHHHHHcCCCcc
Confidence 22234468999999999999998887 2 11 3468899999999985
No 68
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=2e-05 Score=84.07 Aligned_cols=197 Identities=11% Similarity=0.131 Sum_probs=112.0
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCcc--eEEEEEeCCCCCHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFD--EVVYAEVSQRPDVKKIQGQIA 222 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~--~~~wv~v~~~~~~~~~~~~i~ 222 (535)
..+..++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++......... +..+ ..+....-.+.|.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i~ 96 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAIM 96 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHHh
Confidence 4466789999999999999987664 4688999999999999999998754321110 0000 0011111122222
Q ss_pred HHhCCCc-----cCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEEEee-cCchhh
Q 009411 223 DKLGLKF-----YEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLMTA-RSQDVL 288 (535)
Q Consensus 223 ~~l~~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~ilvTt-R~~~v~ 288 (535)
....... ......+.++.+.+.+. .+++-++|+|+++... ..+.+...+ +...+++|++| ....+.
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 2111100 01112233444444332 1345689999997553 222221111 13456655544 444443
Q ss_pred hcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 009411 289 SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIA 347 (535)
Q Consensus 289 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 347 (535)
.........+.+.+++.++....+.+.+.......+ .+....|++.++|.+.-+....
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~-~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE-DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 222334468999999999999999887742221111 2467889999999986554433
No 69
>PRK05642 DNA replication initiation factor; Validated
Probab=98.29 E-value=1.6e-05 Score=75.19 Aligned_cols=150 Identities=18% Similarity=0.238 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (535)
..+.|+|..|+|||.|++.+++....+ -..++|++..+ +... ...+.+.+.. -
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~-~- 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLEQ-Y- 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhhh-C-
Confidence 678899999999999999999876533 23467776432 1111 1233444432 2
Q ss_pred EEEEEeCCCCc---ccccc-cCCCCC---CCCeEEEEeecCchhh-h-------cccCCcceEecCCCCHHHHHHHHHHH
Q 009411 251 ILVILDDIWTN---LDLEN-VGIPFG---VRGCRVLMTARSQDVL-S-------SKMDCQNNFLIGVLNESEARDLFKKL 315 (535)
Q Consensus 251 ~LlVlDdv~~~---~~~~~-~~~~~~---~~gs~ilvTtR~~~v~-~-------~~~~~~~~~~l~~L~~~ea~~Lf~~~ 315 (535)
=+||+||+... ..|+. +...++ ..|..+|+|++...-. . ........+++++++.++-.++++.+
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 37889999633 23332 212222 4567799988764321 0 01122357899999999999999966
Q ss_pred hCCC-CCCchhHHHHHHHHHHcCCChHHHHHHHHH
Q 009411 316 VGDK-IENNDLKSLAMNIVKACRGLPIAIVTIARA 349 (535)
Q Consensus 316 ~~~~-~~~~~l~~~~~~i~~~~~GlPLai~~~~~~ 349 (535)
+... ..-+ .++...|++.+.|..-.+..+-..
T Consensus 179 a~~~~~~l~--~ev~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 179 ASRRGLHLT--DEVGHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred HHHcCCCCC--HHHHHHHHHhcCCCHHHHHHHHHH
Confidence 5322 1111 457788888888876655444433
No 70
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.29 E-value=3.1e-05 Score=80.38 Aligned_cols=166 Identities=16% Similarity=0.129 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (535)
.-+.|+|..|+|||+|++.+++.......-..+++++ ..++...+...++.. ........+.+. ..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~------~~~~~~~~~~~~--~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKT------HKEIEQFKNEIC--QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHh------hhHHHHHHHHhc--cC
Confidence 4688999999999999999998654322123355554 345666666655321 022334444443 34
Q ss_pred EEEEEeCCCCcc---cc-cccCCCCC---CCCeEEEEeecCchhh--------hcccCCcceEecCCCCHHHHHHHHHHH
Q 009411 251 ILVILDDIWTNL---DL-ENVGIPFG---VRGCRVLMTARSQDVL--------SSKMDCQNNFLIGVLNESEARDLFKKL 315 (535)
Q Consensus 251 ~LlVlDdv~~~~---~~-~~~~~~~~---~~gs~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 315 (535)
-+||+||+.... .+ +.+...++ ..|..||+|+....-. .......-.+.+++++.++-.+++.+.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 589999996432 12 22222222 4456788887654211 111234457889999999999999988
Q ss_pred hCCCCC-CchhHHHHHHHHHHcCCChHHHHHHHHHh
Q 009411 316 VGDKIE-NNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (535)
Q Consensus 316 ~~~~~~-~~~l~~~~~~i~~~~~GlPLai~~~~~~L 350 (535)
+..... ..--+++...|++.++|.|-.+.-+...+
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 753211 11224678899999999998776665443
No 71
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.28 E-value=1.2e-05 Score=89.58 Aligned_cols=179 Identities=15% Similarity=0.130 Sum_probs=102.1
Q ss_pred CcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccC----cceEE-EEEeCCCCCHHHHHHHH
Q 009411 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKL----FDEVV-YAEVSQRPDVKKIQGQI 221 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~----f~~~~-wv~v~~~~~~~~~~~~i 221 (535)
...+++||++++.++++.|......-+.++|++|+||||+|+.+++....... .+..+ .+.++.-..
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a-------- 256 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA-------- 256 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc--------
Confidence 45688999999999999998766667779999999999999999987642211 12222 233221000
Q ss_pred HHHhCCCccCCCchHHHHHHHHHHh-cCCcEEEEEeCCCCcc-------ccc--ccCCCCC-CCCeEEEEeecCchhh--
Q 009411 222 ADKLGLKFYEESESGRARKLCERLK-KEKKILVILDDIWTNL-------DLE--NVGIPFG-VRGCRVLMTARSQDVL-- 288 (535)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~~-------~~~--~~~~~~~-~~gs~ilvTtR~~~v~-- 288 (535)
+ ..........+..+.+.+. .+++.+|++|+++... .-+ .+..|.- ....++|-||...+..
T Consensus 257 ----g-~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~ 331 (852)
T TIGR03345 257 ----G-ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKY 331 (852)
T ss_pred ----c-cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhh
Confidence 0 0000011123334444443 2468999999986532 111 1223322 3345666666653221
Q ss_pred ----hcccCCcceEecCCCCHHHHHHHHHHHhC---CCCCCchhHHHHHHHHHHcCC
Q 009411 289 ----SSKMDCQNNFLIGVLNESEARDLFKKLVG---DKIENNDLKSLAMNIVKACRG 338 (535)
Q Consensus 289 ----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~---~~~~~~~l~~~~~~i~~~~~G 338 (535)
.........+.+++++.++..++++.... ....-.-..+....+++.+.+
T Consensus 332 ~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 332 FEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred hhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 11223446899999999999999765442 111111112345566666654
No 72
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.9e-05 Score=83.06 Aligned_cols=199 Identities=14% Similarity=0.151 Sum_probs=109.7
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEE-eCCCCCHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAE-VSQRPDVKKIQGQIAD 223 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~i~~ 223 (535)
.....++|.+..+..|..++..+.. ..+.++|+.|+||||+|+.+++.......++.-.|.. +...+......+.+..
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 3456788999999999998887665 4588999999999999999998764322111001111 0111111122222211
Q ss_pred HhCCCc---c--CCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEEE-eecCchhhh
Q 009411 224 KLGLKF---Y--EESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLM-TARSQDVLS 289 (535)
Q Consensus 224 ~l~~~~---~--~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~ilv-TtR~~~v~~ 289 (535)
.-..+. + .....+.+..+.+.+. .+++-++|+|+++... ..+.+...+ +...+.+|+ |++...+..
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 111100 0 1111233444444441 2355689999987653 222221111 123455444 444444433
Q ss_pred cccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH-HHHH
Q 009411 290 SKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI-AIVT 345 (535)
Q Consensus 290 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~ 345 (535)
........+++.+++.++....+.+.+......- -.+.+..|++.++|..- ++..
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I-~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI-DADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCHHHHHHH
Confidence 2334457899999999999888887663211111 13467889999999654 4443
No 73
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=3.9e-05 Score=78.09 Aligned_cols=180 Identities=12% Similarity=0.140 Sum_probs=102.9
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccc------cCcce-EEEEEeCCCCCHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKAD------KLFDE-VVYAEVSQRPDVKKI 217 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~------~~f~~-~~wv~v~~~~~~~~~ 217 (535)
.....++|.+...+.+.+.+..+.. +.+.++|++|+|||++|+.+.+..... ..|.. ++-+........ +.
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~ 92 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DD 92 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HH
Confidence 3456788999999999999986654 588899999999999999998875431 11211 111111111111 11
Q ss_pred HHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEEEee-cCchhhhccc
Q 009411 218 QGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLMTA-RSQDVLSSKM 292 (535)
Q Consensus 218 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~ilvTt-R~~~v~~~~~ 292 (535)
.+.+++.+...+ . .+++-++++|++.... .+..+...+ +...+.+|++| ....+.....
T Consensus 93 i~~l~~~~~~~p---------------~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 93 IRNLIDQVRIPP---------------Q-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHHHHhhcc---------------c-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 222222211100 0 1345689999986442 233331111 12345555555 3333322222
Q ss_pred CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHH
Q 009411 293 DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (535)
Q Consensus 293 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 343 (535)
.....++..+++.++....+...+......- -.+.+..|++.++|.+-.+
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i-~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKF-EDDALHIIAQKADGALRDA 206 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHhCCCCHHHH
Confidence 3345899999999999999888664222111 1346788999999976533
No 74
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=3.6e-05 Score=81.75 Aligned_cols=195 Identities=13% Similarity=0.106 Sum_probs=108.2
Q ss_pred CCcccccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVH-MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
..+..++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+++........+. ..++.....+.+...
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~-------~pCg~C~~C~~i~~~ 82 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA-------TPCGVCESCVALAPN 82 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC-------CcccccHHHHHhhcc
Confidence 34567899999999999999877655 4689999999999999999987542211100 011111111111110
Q ss_pred hCCC-------ccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEE-EeecCchhh
Q 009411 225 LGLK-------FYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVL-MTARSQDVL 288 (535)
Q Consensus 225 l~~~-------~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~il-vTtR~~~v~ 288 (535)
-+.. .......+.+..+.+.+. .+++-++|+|+++... ..+.+...+ +...+.+| +||....+.
T Consensus 83 ~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 83 GPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 0000 000011222333333221 2355699999997542 222221111 13345444 455545443
Q ss_pred hcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH-HHHHHHH
Q 009411 289 SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI-AIVTIAR 348 (535)
Q Consensus 289 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~~~ 348 (535)
.........+++.+++.++..+.+.+.+......-+ .+....|++.++|.+- ++..+-.
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~-~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD-DAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 323344568999999999999888876643221111 2356778899999774 4444433
No 75
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.25 E-value=7.6e-06 Score=76.56 Aligned_cols=162 Identities=19% Similarity=0.227 Sum_probs=96.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 249 (535)
...+.|+|..|+|||.|.+++++.......-..++|++ ..+....+...+.. .....+.+.+. .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~--------~~~~~~~~~~~--~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD--------GEIEEFKDRLR--S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT--------TSHHHHHHHHC--T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc--------ccchhhhhhhh--c
Confidence 35688999999999999999999876432223466764 34555555555432 12344556665 3
Q ss_pred cEEEEEeCCCCccc---ccc-cCCCCC---CCCeEEEEeecCchhh--------hcccCCcceEecCCCCHHHHHHHHHH
Q 009411 250 KILVILDDIWTNLD---LEN-VGIPFG---VRGCRVLMTARSQDVL--------SSKMDCQNNFLIGVLNESEARDLFKK 314 (535)
Q Consensus 250 ~~LlVlDdv~~~~~---~~~-~~~~~~---~~gs~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~ea~~Lf~~ 314 (535)
-=+|++||++.... |+. +...++ ..|.+||+|++..... .......-.+++++++.++-..++.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 46999999975422 222 111111 4577899999665321 11223446899999999999999998
Q ss_pred HhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 009411 315 LVGDKIENNDLKSLAMNIVKACRGLPIAIVTIAR 348 (535)
Q Consensus 315 ~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 348 (535)
.+...... --++++.-|++.+.+..-.+.-+-.
T Consensus 178 ~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 178 KAKERGIE-LPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHTT---S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHhCCC-CcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 88522111 1145677888888776655544433
No 76
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.24 E-value=8.6e-06 Score=90.06 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=93.4
Q ss_pred CcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhcccc---Cc-ceEEEEEeCCCCCHHHHHHHHH
Q 009411 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADK---LF-DEVVYAEVSQRPDVKKIQGQIA 222 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~---~f-~~~~wv~v~~~~~~~~~~~~i~ 222 (535)
...+++||+++++++++.|......-+.++|++|+|||++|+.+++.....+ .+ +..+|. + +...+...
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a~-- 252 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLAG-- 252 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhhh--
Confidence 3467899999999999999866666778999999999999999998863321 11 223332 1 11111100
Q ss_pred HHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc----------cccccCCCCC-CCCeEEEEeecCchhh---
Q 009411 223 DKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------DLENVGIPFG-VRGCRVLMTARSQDVL--- 288 (535)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------~~~~~~~~~~-~~gs~ilvTtR~~~v~--- 288 (535)
..........+..+.+.+...++.+|++|+++... +...+..|.- ....++|-+|...+..
T Consensus 253 -----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~ 327 (731)
T TIGR02639 253 -----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHF 327 (731)
T ss_pred -----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHh
Confidence 00001122344555555544467999999997321 1112222222 2234555555442211
Q ss_pred ---hcccCCcceEecCCCCHHHHHHHHHHHh
Q 009411 289 ---SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (535)
Q Consensus 289 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (535)
.........+.+++++.++..++++...
T Consensus 328 ~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 328 EKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1112234579999999999999999654
No 77
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.23 E-value=6.7e-06 Score=81.95 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=63.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC--CCHHHHHHHHHHHhCCCccCCCch---H---HH-H
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR--PDVKKIQGQIADKLGLKFYEESES---G---RA-R 239 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~---~---~~-~ 239 (535)
....++|+|++|+|||||++.+++....+ +|+..+|+.+.+. .++.++++.+...+-...-+.+.. . .+ +
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 44678999999999999999999987764 8999999999866 688899998844332111111111 1 11 1
Q ss_pred HHHHHHhcCCcEEEEEeCCCCc
Q 009411 240 KLCERLKKEKKILVILDDIWTN 261 (535)
Q Consensus 240 ~l~~~l~~~~~~LlVlDdv~~~ 261 (535)
........+++++|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 2222224578999999999643
No 78
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.7e-05 Score=82.45 Aligned_cols=198 Identities=11% Similarity=0.118 Sum_probs=110.9
Q ss_pred CCcccccccHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
..+..++|.+..++.|...+..+. ...+.++|+.|+||||+|+.+++.......... ..++.....+.|...
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g 85 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQG 85 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcC
Confidence 345677898888888888887665 477889999999999999999987643211100 011111112222111
Q ss_pred hCCCcc-----CCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEEEeecC-chhhhc
Q 009411 225 LGLKFY-----EESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLMTARS-QDVLSS 290 (535)
Q Consensus 225 l~~~~~-----~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~ilvTtR~-~~v~~~ 290 (535)
...... .....+.++.+.+.+. .+++-++|+|+++... ....+...+ +.....+|++|.. ..+...
T Consensus 86 ~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 86 MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHH
Confidence 100000 0001122222322221 2456799999997652 223331111 1234555555544 443322
Q ss_pred ccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh-HHHHHHHHHhh
Q 009411 291 KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP-IAIVTIARALR 351 (535)
Q Consensus 291 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP-Lai~~~~~~L~ 351 (535)
.......+++.+++.++....+...+......- -.+.+..|++.++|.+ .|+..+...+.
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i-d~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY-DPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 223345889999999999999988664322111 1346778999999965 67777765543
No 79
>PF14516 AAA_35: AAA-like domain
Probab=98.22 E-value=0.00019 Score=71.66 Aligned_cols=199 Identities=14% Similarity=0.155 Sum_probs=118.0
Q ss_pred CcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC-----CCHHHHHHHH
Q 009411 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-----PDVKKIQGQI 221 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-----~~~~~~~~~i 221 (535)
+.+-.+.|...-+++.+.+.+. ...+.|.|+-.+|||+|...+.+.....+ +. ++++++..- .+....++.+
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~~-~~-~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQG-YR-CVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHCC-CE-EEEEEeecCCCcccCCHHHHHHHH
Confidence 3445678887777888888764 36889999999999999999998876542 33 457776542 2455445444
Q ss_pred ----HHHhCCCccC-------CCc-hHHHHHHHHHHh--cCCcEEEEEeCCCCccc--------ccccC------CCCCC
Q 009411 222 ----ADKLGLKFYE-------ESE-SGRARKLCERLK--KEKKILVILDDIWTNLD--------LENVG------IPFGV 273 (535)
Q Consensus 222 ----~~~l~~~~~~-------~~~-~~~~~~l~~~l~--~~~~~LlVlDdv~~~~~--------~~~~~------~~~~~ 273 (535)
.++++....- ... ......+.+.+. .+++.+|++|+++..-. +..++ ...+.
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 4455443210 011 111112222222 25899999999975421 11111 00000
Q ss_pred CCeEEEEeecCch--hh----hcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 009411 274 RGCRVLMTARSQD--VL----SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIA 347 (535)
Q Consensus 274 ~gs~ilvTtR~~~--v~----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 347 (535)
-..-.++...+.. .. .........+.|++++.+|...|+.++-.. ... ...++|...+||+|.-+..++
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-~~~----~~~~~l~~~tgGhP~Lv~~~~ 240 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-FSQ----EQLEQLMDWTGGHPYLVQKAC 240 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-CCH----HHHHHHHHHHCCCHHHHHHHH
Confidence 1111222222111 10 111233458999999999999998876422 111 237899999999999999999
Q ss_pred HHhhcC
Q 009411 348 RALRNK 353 (535)
Q Consensus 348 ~~L~~~ 353 (535)
..+...
T Consensus 241 ~~l~~~ 246 (331)
T PF14516_consen 241 YLLVEE 246 (331)
T ss_pred HHHHHc
Confidence 999753
No 80
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.17 E-value=0.00017 Score=67.70 Aligned_cols=178 Identities=16% Similarity=0.179 Sum_probs=104.9
Q ss_pred cCCcccccccHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHH
Q 009411 145 IKGYEAFESRMSTLNDVINALK-----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (535)
Q Consensus 145 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 219 (535)
|.....|+|.++..++|-=.+. ++..-.+.++|++|.||||||.-+++...+. + -++.+..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~-------- 87 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPA-------- 87 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----Eeccccc--------
Confidence 3456789999888887765554 4567789999999999999999999998764 1 1111111
Q ss_pred HHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc---------cccccCC--CCC-CCC-----------e
Q 009411 220 QIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL---------DLENVGI--PFG-VRG-----------C 276 (535)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---------~~~~~~~--~~~-~~g-----------s 276 (535)
.........++..|. ..=+|.+|.++... ..+.+.. ..+ +++ +
T Consensus 88 ------------leK~gDlaaiLt~Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 88 ------------LEKPGDLAAILTNLE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ------------ccChhhHHHHHhcCC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 111112233333333 23456667765431 1111110 001 222 3
Q ss_pred EEEEeecCchhhhcc-cCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhh
Q 009411 277 RVLMTARSQDVLSSK-MDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALR 351 (535)
Q Consensus 277 ~ilvTtR~~~v~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~ 351 (535)
-|=.|||...+.... ....-+.+++--+.+|-.++..+.+..-...-+ .+.+.+|+++..|-|--..-+-+..+
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~-~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID-EEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC-hHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 355688887553211 122347788889999999999988752111111 24588999999999964444444433
No 81
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=8.4e-05 Score=77.73 Aligned_cols=178 Identities=14% Similarity=0.176 Sum_probs=103.9
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccc-------------------CcceEEE
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADK-------------------LFDEVVY 205 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~-------------------~f~~~~w 205 (535)
.....++|.+..+..|..++..+.. ..+.++|+.|+||||+|+.++....... .|..+++
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 3456788999999999999986654 4567899999999999999987653110 0111222
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccc----CCCCCCCC
Q 009411 206 AEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENV----GIPFGVRG 275 (535)
Q Consensus 206 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~----~~~~~~~g 275 (535)
+..+.... .+..+.+.+... .+++-++|+|+++... ....+ ..| ...
T Consensus 93 idaas~~g---------------------vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep--p~~ 149 (486)
T PRK14953 93 IDAASNRG---------------------IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP--PPR 149 (486)
T ss_pred EeCccCCC---------------------HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC--CCC
Confidence 22211111 112223333221 2456799999997542 22222 222 234
Q ss_pred eEEEE-eecCchhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 009411 276 CRVLM-TARSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIA 347 (535)
Q Consensus 276 s~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 347 (535)
+.+|+ ||+...+..........+.+.+++.++....+...+....... -.+.+..|++.++|.+..+....
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i-d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY-EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 44444 4444333222223345799999999999988888664221111 12457788999999876544443
No 82
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=8e-05 Score=80.15 Aligned_cols=196 Identities=13% Similarity=0.140 Sum_probs=111.5
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
.....++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++......... -...++.....+.+...
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEG 86 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcC
Confidence 3456788999999999888886654 4568999999999999999998764221100 00111222333333322
Q ss_pred hCCCc---c--CCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEEEeecC-chhhhc
Q 009411 225 LGLKF---Y--EESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLMTARS-QDVLSS 290 (535)
Q Consensus 225 l~~~~---~--~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~ilvTtR~-~~v~~~ 290 (535)
.+... + .....+.+..+.+.+. .+++-++|+|+++... ..+.+...+ +...+.+|++|.+ ..+...
T Consensus 87 ~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHH
Confidence 22111 0 1111223333333332 1356799999997542 233331111 1335556655543 333222
Q ss_pred ccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 009411 291 KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIAR 348 (535)
Q Consensus 291 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 348 (535)
.......+.+.+++.++....+.+.+......-+ .+.+..|++.++|.+..+.....
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~-~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE-PGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 2233457889999999999988887743221111 34678999999999865544433
No 83
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=0.00033 Score=70.16 Aligned_cols=205 Identities=12% Similarity=0.110 Sum_probs=123.6
Q ss_pred CCcccccccHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI 221 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 221 (535)
..+..+.||+.+++.+-+++. ....+.+-|.|-+|.|||.+...++.+......=-.+++++...-.....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 345678899999999988876 3456788899999999999999999887643212245777766555667788888
Q ss_pred HHHhCCC-ccCCCchHHHHHHHHHHhcC-CcEEEEEeCCCCcc-----ccccc-CCCCCCCCeEEEEeecCchh------
Q 009411 222 ADKLGLK-FYEESESGRARKLCERLKKE-KKILVILDDIWTNL-----DLENV-GIPFGVRGCRVLMTARSQDV------ 287 (535)
Q Consensus 222 ~~~l~~~-~~~~~~~~~~~~l~~~l~~~-~~~LlVlDdv~~~~-----~~~~~-~~~~~~~gs~ilvTtR~~~v------ 287 (535)
+..+-.. .......+....+.....+. ..+|+|||..+... .+-.+ ..| .-+++++|+.---...
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp-~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWP-KLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcc-cCCcceeeeeeehhhhhHHHHH
Confidence 7776111 11111233444555555443 47899999986432 11111 111 1345665554322211
Q ss_pred hhc----ccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhh
Q 009411 288 LSS----KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALR 351 (535)
Q Consensus 288 ~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~ 351 (535)
+.. ..-....+...|-+.++-.++|..........+.+...+..++++|.|.-=-+..+-...+
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 010 1112356778899999999999998864444444444455566666554443433333333
No 84
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.13 E-value=0.00014 Score=75.06 Aligned_cols=178 Identities=19% Similarity=0.182 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (535)
..+.|+|++|+|||+|++.+++....+..-..++|++. .++...+...+... ......+.+.. .
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~~--~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN--------KMEEFKEKYRS--V 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC--------CHHHHHHHHHh--C
Confidence 56889999999999999999998754311134566643 33444555444321 12234444432 3
Q ss_pred EEEEEeCCCCccc---c-cccCCCCC---CCCeEEEEeecCchhh--------hcccCCcceEecCCCCHHHHHHHHHHH
Q 009411 251 ILVILDDIWTNLD---L-ENVGIPFG---VRGCRVLMTARSQDVL--------SSKMDCQNNFLIGVLNESEARDLFKKL 315 (535)
Q Consensus 251 ~LlVlDdv~~~~~---~-~~~~~~~~---~~gs~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 315 (535)
-+|+|||++.... + +.+...+. ..+..+|+||....-. ...+.....+.+++.+.++-..++.+.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 4899999975321 1 11211111 3456688887653211 111223357899999999999999988
Q ss_pred hCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhh------cC--CHHHHHHHHHHh
Q 009411 316 VGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALR------NK--NTFEWKSALREL 365 (535)
Q Consensus 316 ~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~------~~--~~~~w~~~l~~l 365 (535)
+......- -.++...|++.+.|.+-.+.-+-..|. ++ +......++...
T Consensus 281 ~~~~~~~l-~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 281 AEEEGLEL-PDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHcCCCC-CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 85322111 145788899999987764443322221 22 555666666654
No 85
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.13 E-value=2.9e-05 Score=87.03 Aligned_cols=156 Identities=17% Similarity=0.276 Sum_probs=93.4
Q ss_pred cccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhcccc---Cc-ceEEEEEeCCCCCHHHHHHHHHH
Q 009411 148 YEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADK---LF-DEVVYAEVSQRPDVKKIQGQIAD 223 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~---~f-~~~~wv~v~~~~~~~~~~~~i~~ 223 (535)
..+++||+++++.+++.|......-+.++|++|+|||++|+.++....... .. +..+|. + +...++.
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a---- 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA---- 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc----
Confidence 457899999999999999866666678999999999999999998754221 11 233442 1 1111111
Q ss_pred HhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc---------cccccCCCCC-CCCeEEEEeecCchhh-----
Q 009411 224 KLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL---------DLENVGIPFG-VRGCRVLMTARSQDVL----- 288 (535)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---------~~~~~~~~~~-~~gs~ilvTtR~~~v~----- 288 (535)
+.. ......+.+..+.+.+...++.+|++|+++... +...+..|.- ....++|.+|......
T Consensus 249 --g~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~ 325 (821)
T CHL00095 249 --GTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEK 325 (821)
T ss_pred --cCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhc
Confidence 111 111123345556665555568999999996321 1112212222 2335566666554331
Q ss_pred -hcccCCcceEecCCCCHHHHHHHHHHH
Q 009411 289 -SSKMDCQNNFLIGVLNESEARDLFKKL 315 (535)
Q Consensus 289 -~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 315 (535)
.........+.++..+.++...+++..
T Consensus 326 D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 326 DPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred CHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 112234457889999999998888754
No 86
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=7.5e-05 Score=80.41 Aligned_cols=189 Identities=15% Similarity=0.144 Sum_probs=106.3
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
.....++|.+..++.|..++..++. ..+.++|+.|+||||+|+.++...-.....+ ...........
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~---------~~~pC~~C~~~--- 82 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD---------LLEPCQECIEN--- 82 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC---------CCCchhHHHHh---
Confidence 3456788999999999999886654 5668999999999999999987643211000 00000000000
Q ss_pred hCCCcc-------CCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCC--CCCCeE-EEEeecCchhh
Q 009411 225 LGLKFY-------EESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPF--GVRGCR-VLMTARSQDVL 288 (535)
Q Consensus 225 l~~~~~-------~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~-ilvTtR~~~v~ 288 (535)
.+...+ .....+.++.+.+.+. .+++-++|+|+++... .+..+.-.+ +...+. |++|+....+.
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 000000 0011222334444332 1456699999997542 233331111 123444 55555555543
Q ss_pred hcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH-HHHHHH
Q 009411 289 SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI-AIVTIA 347 (535)
Q Consensus 289 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~~ 347 (535)
.........+.+.+++.++....+...+.......+ .+.+..|++.++|.+- |+..+-
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id-~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE-KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 323344468999999999999888876532211111 2357789999999764 444433
No 87
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.12 E-value=9.9e-05 Score=76.88 Aligned_cols=159 Identities=16% Similarity=0.273 Sum_probs=90.2
Q ss_pred CcccccccHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhcccc---CcceEEEEEeCC
Q 009411 147 GYEAFESRMSTLNDVINALK----N---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADK---LFDEVVYAEVSQ 210 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~---~f~~~~wv~v~~ 210 (535)
.+..+.|.+..+++|.+.+. . ...+-+.++|++|+|||++|+.+++.....- ......|+++..
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 34567788888888877653 1 2345688999999999999999999865321 112344454433
Q ss_pred CCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHH----hcCCcEEEEEeCCCCcc---------c-----ccccCCCCC
Q 009411 211 RPDVKKIQGQIADKLGLKFYEESESGRARKLCERL----KKEKKILVILDDIWTNL---------D-----LENVGIPFG 272 (535)
Q Consensus 211 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~~~~LlVlDdv~~~~---------~-----~~~~~~~~~ 272 (535)
. +++... .. ........+.+.. ..+++++|+||+++... + +..+...+.
T Consensus 260 ~----eLl~ky--------vG-ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 260 P----ELLNKY--------VG-ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred h----hhcccc--------cc-hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 1 111110 00 0011122222222 23578999999997421 1 111211111
Q ss_pred ----CCCeEEEEeecCchhhhc-cc---CCcceEecCCCCHHHHHHHHHHHhCC
Q 009411 273 ----VRGCRVLMTARSQDVLSS-KM---DCQNNFLIGVLNESEARDLFKKLVGD 318 (535)
Q Consensus 273 ----~~gs~ilvTtR~~~v~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (535)
..+..||.||........ .. .-...|.++..+.++..++|..+...
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 235556667755543311 11 12346899999999999999998753
No 88
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=0.00011 Score=76.31 Aligned_cols=177 Identities=14% Similarity=0.197 Sum_probs=104.5
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccc---------------------CcceE
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADK---------------------LFDEV 203 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~---------------------~f~~~ 203 (535)
.....++|.+..++.|.+++..+.. ..+.++|+.|+||||+|+.+++...... +++ .
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-V 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-e
Confidence 3456788999999999999886665 5678999999999999999988753211 111 1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccc----cCCCCCC
Q 009411 204 VYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLEN----VGIPFGV 273 (535)
Q Consensus 204 ~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~----~~~~~~~ 273 (535)
+++........ +.+..+.+.+. .+++-++|+|+++... .... +..| .
T Consensus 93 ~~i~g~~~~gi---------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep--~ 149 (451)
T PRK06305 93 LEIDGASHRGI---------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP--P 149 (451)
T ss_pred EEeeccccCCH---------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC--C
Confidence 11111111111 11222222221 1456789999986542 2222 2222 3
Q ss_pred CCeEEEEeec-CchhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh-HHHHHHH
Q 009411 274 RGCRVLMTAR-SQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP-IAIVTIA 347 (535)
Q Consensus 274 ~gs~ilvTtR-~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP-Lai~~~~ 347 (535)
..+.+|++|. ...+..........+++.+++.++....+.+.+......- -.+.+..|++.++|.+ .|+..+-
T Consensus 150 ~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i-~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 150 QHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET-SREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred CCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3555665553 3333222233446899999999999988887764221111 1346788999999976 4444443
No 89
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=0.00013 Score=78.41 Aligned_cols=178 Identities=11% Similarity=0.131 Sum_probs=105.9
Q ss_pred CcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccc---------------------cCcceEE
Q 009411 147 GYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKAD---------------------KLFDEVV 204 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~---------------------~~f~~~~ 204 (535)
....++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+....... .+|+. .
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 456788999999999999987665 457899999999999999988865311 12331 2
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEEE
Q 009411 205 YAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLM 280 (535)
Q Consensus 205 wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~ilv 280 (535)
.+..+......+ .+.++..+...+ ..+++-++|+|+++... ....+...+ +...+.+|+
T Consensus 94 ~ld~~~~~~vd~-Ir~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 94 ELDAASNNSVDD-IRNLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred EecccccCCHHH-HHHHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 222222212211 112222211100 01345688999987653 233331111 134555555
Q ss_pred -eecCchhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHH
Q 009411 281 -TARSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (535)
Q Consensus 281 -TtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 343 (535)
||....+..........+++.+++.++....+.+.+.......+ .+.+..|++.++|..--+
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~-~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE-PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 44545444333444578999999999999999887643222111 245788999999976433
No 90
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=0.00017 Score=75.52 Aligned_cols=177 Identities=13% Similarity=0.176 Sum_probs=105.6
Q ss_pred CCcccccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHHhccccCcc-------------------eEEE
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVH-MIGAYGMAGVGKTMLVKEVARQAKADKLFD-------------------EVVY 205 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~-------------------~~~w 205 (535)
.....++|.+...+.|...+..+... ++.++|+.|+||||+|+.+++..-.....+ .++.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 34567889999999999988866654 568999999999999999987753211000 1122
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccc----cCCCCCCCC
Q 009411 206 AEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLEN----VGIPFGVRG 275 (535)
Q Consensus 206 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~----~~~~~~~~g 275 (535)
+.......+. .+..+.+... .+++-++|+|+++... .... +..| ...
T Consensus 91 ldaas~~gId---------------------~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp--p~~ 147 (535)
T PRK08451 91 MDAASNRGID---------------------DIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP--PSY 147 (535)
T ss_pred eccccccCHH---------------------HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc--CCc
Confidence 2211111111 1222222111 1355699999997553 2222 2222 345
Q ss_pred eEEEEeecCc-hhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 009411 276 CRVLMTARSQ-DVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (535)
Q Consensus 276 s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 346 (535)
+++|++|.+. .+..........+++.+++.++....+.+.+......- -.+.+..|++.++|.+--+...
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHH
Confidence 6666666543 22222223456899999999999999887764322111 1346788999999988444333
No 91
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.10 E-value=0.00014 Score=76.06 Aligned_cols=179 Identities=18% Similarity=0.155 Sum_probs=105.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 249 (535)
...+.|+|++|+|||+|++.+++....+..-..++|++.. ++...+...+... ....+.+.+. +
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEEFKEKYR--S 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHHh--c
Confidence 3568899999999999999999987643212335566433 3344444444211 1233444444 3
Q ss_pred cEEEEEeCCCCccc---c-cccCCCCC---CCCeEEEEeecCchhh--------hcccCCcceEecCCCCHHHHHHHHHH
Q 009411 250 KILVILDDIWTNLD---L-ENVGIPFG---VRGCRVLMTARSQDVL--------SSKMDCQNNFLIGVLNESEARDLFKK 314 (535)
Q Consensus 250 ~~LlVlDdv~~~~~---~-~~~~~~~~---~~gs~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~ea~~Lf~~ 314 (535)
.-+|||||++.... + +.+...++ ..|..||+||....-. .........+.+++.+.++-..++.+
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 45899999964311 1 12211111 3455688887654211 11223345799999999999999999
Q ss_pred HhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhh------cC--CHHHHHHHHHHh
Q 009411 315 LVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALR------NK--NTFEWKSALREL 365 (535)
Q Consensus 315 ~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~------~~--~~~~w~~~l~~l 365 (535)
.+..... .--.++...|++.+.|..-.+.-+-..|. ++ +......++..+
T Consensus 292 ~~~~~~~-~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 292 KAEEEGI-DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHcCC-CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 8753211 11135688899999988664433322221 22 666677777765
No 92
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=0.00042 Score=68.43 Aligned_cols=192 Identities=17% Similarity=0.196 Sum_probs=111.5
Q ss_pred ccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccc--------------cCcceEEEEEeCCCCC
Q 009411 149 EAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKAD--------------KLFDEVVYAEVSQRPD 213 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~--------------~~f~~~~wv~v~~~~~ 213 (535)
..++|.+...+.+...+..+.. +...++|+.|+||+++|..+++..-.. .|.| ..|+.-.....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecccccc
Confidence 4678999999999999887764 789999999999999999998774322 1222 23332110000
Q ss_pred HHHHHHHHHHHhCC--CccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCccc------ccccCCCCCCCCeEEEEe
Q 009411 214 VKKIQGQIADKLGL--KFYEESESGRARKLCERLK----KEKKILVILDDIWTNLD------LENVGIPFGVRGCRVLMT 281 (535)
Q Consensus 214 ~~~~~~~i~~~l~~--~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~~------~~~~~~~~~~~gs~ilvT 281 (535)
-..+-...+...+. .....-..+.++.+.+.+. .+++-++|+|+++.... +..+..| ++..-|++|
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP--p~~~fILi~ 160 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP--GNGTLILIA 160 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCC--CCCeEEEEE
Confidence 00000011111110 1111112234455655553 24567999999875532 2333334 233444455
Q ss_pred ecCchhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 009411 282 ARSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIA 347 (535)
Q Consensus 282 tR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 347 (535)
+....+..........+++.+++.++..+.+.+......... ....++..++|.|..+....
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~~----~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNI----NFPELLALAQGSPGAAIANI 222 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccchh----HHHHHHHHcCCCHHHHHHHH
Confidence 444444443445567899999999999999998753221111 13578999999996654433
No 93
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.08 E-value=0.00015 Score=67.37 Aligned_cols=117 Identities=16% Similarity=0.237 Sum_probs=70.3
Q ss_pred CCcccccccHHHHHHHHH----HhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVIN----ALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI 221 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~----~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 221 (535)
.....++|-+...+.|++ .+......-+.++|..|+|||+|++.+.+....++ .--|.+...
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~---------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE---------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH----------
Confidence 445678888888777764 34455566788999999999999999999877553 122233221
Q ss_pred HHHhCCCccCCCchHHHHHHHHHHh-cCCcEEEEEeCCCCc---ccccccCCCC------CCCCeEEEEeecCchhh
Q 009411 222 ADKLGLKFYEESESGRARKLCERLK-KEKKILVILDDIWTN---LDLENVGIPF------GVRGCRVLMTARSQDVL 288 (535)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~---~~~~~~~~~~------~~~gs~ilvTtR~~~v~ 288 (535)
....+..+...+. .+.+|+|.+||+.-. .....+...+ .+.+..|..||......
T Consensus 90 ------------~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 90 ------------DLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred ------------HhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 0111223333333 257899999998522 2233332111 14456666677666554
No 94
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.07 E-value=1.6e-05 Score=75.19 Aligned_cols=183 Identities=18% Similarity=0.187 Sum_probs=112.7
Q ss_pred cCCcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcc-eEEEEEeCCCCCHHHHHHHH--
Q 009411 145 IKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFD-EVVYAEVSQRPDVKKIQGQI-- 221 (535)
Q Consensus 145 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i-- 221 (535)
|.....+.|.+..+..|.+.+.....+....+|++|.|||+.|+.++...-..+.|. +++-.++|......-+-.++
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~ 111 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKN 111 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcC
Confidence 445677889999999999999887789999999999999999999999876655564 34445665544332111111
Q ss_pred HHHhCCCccCCCchHHHHHHHHHHh-cCCc-EEEEEeCCCCc--ccccccCCCCC--CCCeEE-EEeecCchhhhcccCC
Q 009411 222 ADKLGLKFYEESESGRARKLCERLK-KEKK-ILVILDDIWTN--LDLENVGIPFG--VRGCRV-LMTARSQDVLSSKMDC 294 (535)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~-~LlVlDdv~~~--~~~~~~~~~~~--~~gs~i-lvTtR~~~v~~~~~~~ 294 (535)
+.++...... ... .-++ -.+|||+++.. +.|..+..... ...++. +||+--..+.......
T Consensus 112 fakl~~~~~~------------~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 112 FAKLTVLLKR------------SDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred HHHHhhcccc------------ccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh
Confidence 1111000000 000 0123 48899999865 45666532221 334554 4444333332222233
Q ss_pred cceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 009411 295 QNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (535)
Q Consensus 295 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP 340 (535)
..-+..++|.+++...-++..+..+...-+ .+..+.|++.++|.-
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDL 224 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcH
Confidence 357889999999999999988853333222 235778999998854
No 95
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.06 E-value=5.3e-05 Score=75.46 Aligned_cols=146 Identities=14% Similarity=0.187 Sum_probs=84.9
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
.....++|.+...+.+..++..+.. .++.++|++|+|||++|+.+++.... ....++.+. ... +..+..+..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~-~~i~~~l~~ 90 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRI-DFVRNRLTR 90 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccH-HHHHHHHHH
Confidence 4456788999999999999886654 56667999999999999999987532 123444443 221 111111111
Q ss_pred hCCCccCCCchHHHHHHHHHH-hcCCcEEEEEeCCCCcc--c-ccccCCCC--CCCCeEEEEeecCchhh-hcccCCcce
Q 009411 225 LGLKFYEESESGRARKLCERL-KKEKKILVILDDIWTNL--D-LENVGIPF--GVRGCRVLMTARSQDVL-SSKMDCQNN 297 (535)
Q Consensus 225 l~~~~~~~~~~~~~~~l~~~l-~~~~~~LlVlDdv~~~~--~-~~~~~~~~--~~~gs~ilvTtR~~~v~-~~~~~~~~~ 297 (535)
+ .... ..+.+-++|+|+++... . ...+.... ...++++|+||...... .........
T Consensus 91 ~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 91 F----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred H----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 1 0111 01245689999997541 1 11121101 14567888888654321 111223346
Q ss_pred EecCCCCHHHHHHHHHH
Q 009411 298 FLIGVLNESEARDLFKK 314 (535)
Q Consensus 298 ~~l~~L~~~ea~~Lf~~ 314 (535)
+.++..+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 77777888887766554
No 96
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.06 E-value=1.9e-05 Score=80.01 Aligned_cols=108 Identities=21% Similarity=0.299 Sum_probs=72.3
Q ss_pred ccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 009411 149 EAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLK 228 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 228 (535)
..+++.+..++.+...|... +.+.++|++|+|||++|+.+++.......|+.+.||.+++..+..+.+..+.-. +..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 44667888899999888754 567789999999999999999988766678889999999988776655433100 000
Q ss_pred ccCCCchHHHHHHHHHH-h-cCCcEEEEEeCCCCc
Q 009411 229 FYEESESGRARKLCERL-K-KEKKILVILDDIWTN 261 (535)
Q Consensus 229 ~~~~~~~~~~~~l~~~l-~-~~~~~LlVlDdv~~~ 261 (535)
. ... .....++.... . .+++++||+|++...
T Consensus 252 y-~~~-~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 F-RRK-DGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred e-Eec-CchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0 000 11111222222 1 246899999999654
No 97
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.04 E-value=0.0001 Score=74.98 Aligned_cols=172 Identities=17% Similarity=0.254 Sum_probs=97.1
Q ss_pred CcccccccHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 147 GYEAFESRMSTLNDVINALK----N---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
.+.++.|-+..+++|.+.+. . ...+-+.++|++|+|||+||+.+++..... | +.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f-----i~i~~--- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F-----IRVVG--- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEeh---
Confidence 45567788777777666542 1 235678899999999999999999876532 2 22211
Q ss_pred HHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc------------c----ccccCCC---C-CC
Q 009411 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL------------D----LENVGIP---F-GV 273 (535)
Q Consensus 214 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~----~~~~~~~---~-~~ 273 (535)
..+.... ++ ........+........+.+|++|+++... . +..+... + ..
T Consensus 213 -s~l~~k~---~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 -SEFVQKY---LG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred -HHHHHHh---cc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 1111111 11 011233444554445678999999986320 0 1111111 1 13
Q ss_pred CCeEEEEeecCchhhhc-cc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 009411 274 RGCRVLMTARSQDVLSS-KM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (535)
Q Consensus 274 ~gs~ilvTtR~~~v~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP 340 (535)
.+..||+||........ .. .-...+.++..+.++-..+|..+.......++. ...++++.+.|..
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 46678888876544321 11 123468899999999888888776432221111 1345666676653
No 98
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00028 Score=75.94 Aligned_cols=196 Identities=12% Similarity=0.091 Sum_probs=110.1
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
.....++|.+.....|..++..+.. ..+.++|+.|+||||+|+.+++.......... ....+...+..+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHhcC
Confidence 3455688999999999988886653 67889999999999999999988653211100 00111222333333222
Q ss_pred hCCCc-----cCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEEE-eecCchhhhc
Q 009411 225 LGLKF-----YEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLM-TARSQDVLSS 290 (535)
Q Consensus 225 l~~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~ilv-TtR~~~v~~~ 290 (535)
..... ......+.++.+.+.+. .+++-++|+|+++... ....+...+ +...+.+|+ |+....+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 21111 01112233344443332 1345689999997543 233331111 123454444 4433333322
Q ss_pred ccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 009411 291 KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIA 347 (535)
Q Consensus 291 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 347 (535)
.......+.+..++.++....+.+.+.......+ .+.+..|++.++|.+..+....
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is-~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE-PEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 2334467888899999988888876643211111 2457789999999886544433
No 99
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.00 E-value=0.00032 Score=72.76 Aligned_cols=180 Identities=13% Similarity=0.175 Sum_probs=105.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 249 (535)
..-+.|+|++|+|||+|++.+++.......-..++|++. .++..++...+... ......+.+. .+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~f~~~~~-~~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG--------KLNEFREKYR-KK 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHHHHHHHH-hc
Confidence 345899999999999999999998654321134667753 34555665555321 1223333333 23
Q ss_pred cEEEEEeCCCCcc---cc-cccCCCCC---CCCeEEEEeecCc-hhh----h---cccCCcceEecCCCCHHHHHHHHHH
Q 009411 250 KILVILDDIWTNL---DL-ENVGIPFG---VRGCRVLMTARSQ-DVL----S---SKMDCQNNFLIGVLNESEARDLFKK 314 (535)
Q Consensus 250 ~~LlVlDdv~~~~---~~-~~~~~~~~---~~gs~ilvTtR~~-~v~----~---~~~~~~~~~~l~~L~~~ea~~Lf~~ 314 (535)
.-+|++||+.... .+ ..+...+. ..|..||+||... .-. . ........+.+++.+.+.-.+++++
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 5689999997431 11 11211111 3455788888532 211 1 1123345889999999999999998
Q ss_pred HhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHh------hcC--CHHHHHHHHHHh
Q 009411 315 LVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL------RNK--NTFEWKSALREL 365 (535)
Q Consensus 315 ~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L------~~~--~~~~w~~~l~~l 365 (535)
.+......- -.++...|++.+.|..-.+.-+-..| .++ +......++..+
T Consensus 275 ~~~~~~~~l-~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 275 MLEIEHGEL-PEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHhcCCCC-CHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 875221111 13568889998888654443332222 122 666667777654
No 100
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.00 E-value=0.00035 Score=68.23 Aligned_cols=194 Identities=15% Similarity=0.164 Sum_probs=115.6
Q ss_pred ccccccHHHHHHHHHHhcCCC---ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHh
Q 009411 149 EAFESRMSTLNDVINALKNPD---VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL 225 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 225 (535)
+.|.+|+.++..+...+.+.. +..|.|.|-+|.|||.+.+++.+..... .+|+++-+.++.+.++..|+..+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHHHHHHHHHHh
Confidence 467799999999998887433 3455899999999999999999887432 57999999999999999999999
Q ss_pred C-CCccCCCch---HH----HHHHHH--HHh-cCCcEEEEEeCCCCcccccccCCC--------CCCCCeEEEEeecCch
Q 009411 226 G-LKFYEESES---GR----ARKLCE--RLK-KEKKILVILDDIWTNLDLENVGIP--------FGVRGCRVLMTARSQD 286 (535)
Q Consensus 226 ~-~~~~~~~~~---~~----~~~l~~--~l~-~~~~~LlVlDdv~~~~~~~~~~~~--------~~~~gs~ilvTtR~~~ 286 (535)
+ .+.+..... +. +..+.+ ... .++.++||||+++...+.....++ .+.+.. +|+++-...
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~~ 159 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAPSC 159 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEecccc
Confidence 6 222222111 11 112222 111 145799999999876554443211 112333 344433322
Q ss_pred hhhcc--cCCc--ceEecCCCCHHHHHHHHHHHhCCCCC----CchhHHHHHHHHHHcCCChHHHHHHHHH
Q 009411 287 VLSSK--MDCQ--NNFLIGVLNESEARDLFKKLVGDKIE----NNDLKSLAMNIVKACRGLPIAIVTIARA 349 (535)
Q Consensus 287 v~~~~--~~~~--~~~~l~~L~~~ea~~Lf~~~~~~~~~----~~~l~~~~~~i~~~~~GlPLai~~~~~~ 349 (535)
..... +++. .++..+.-+.+|...++.+.-.+... ..-+.-+..-....|+ -+-.+..++..
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~ 229 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISL 229 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 11111 2333 35566778888888888764422111 0011112334455666 55555555544
No 101
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00038 Score=74.28 Aligned_cols=190 Identities=14% Similarity=0.132 Sum_probs=106.6
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
.....++|.+...+.|.+++..++. ..+.++|+.|+||||+|+.++.........+ +.+++.....+.+...
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g 85 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNG 85 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcC
Confidence 4466789999999999999886554 5577899999999999999987654221100 0111111222222211
Q ss_pred hCCCcc-----CCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEE-EeecCchhhhc
Q 009411 225 LGLKFY-----EESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVL-MTARSQDVLSS 290 (535)
Q Consensus 225 l~~~~~-----~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~il-vTtR~~~v~~~ 290 (535)
...+.. .....+.+..+.+... .++.-++|+|+++... .+..+...+ +...+.+| .||....+...
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 111100 0011223334444332 2456688999997542 233331111 12344444 45444443322
Q ss_pred ccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHH
Q 009411 291 KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (535)
Q Consensus 291 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 343 (535)
.......+...+++.++....+...+.......+ .+.+..|++.++|.+.-+
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~-~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE-DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 2334467889999999999998887642221111 345778888999877543
No 102
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00016 Score=77.47 Aligned_cols=194 Identities=13% Similarity=0.162 Sum_probs=107.7
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
..+..++|.+...+.|.+++..+.. ..+.++|+.|+||||+|+.+++........+ ...++.......|...
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~~g 85 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEITEG 85 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHhcC
Confidence 4456789999999999999887665 4568999999999999999988754221110 0001111111111110
Q ss_pred hCCC-----ccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccc----CCCCCCCCeEEE-EeecCchhh
Q 009411 225 LGLK-----FYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENV----GIPFGVRGCRVL-MTARSQDVL 288 (535)
Q Consensus 225 l~~~-----~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~----~~~~~~~gs~il-vTtR~~~v~ 288 (535)
-... .......+.+..+.+.+. .+++-++|+|+++... ....+ ..| ...+.+| +||....+.
T Consensus 86 ~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep--p~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 86 RSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP--PPHVKFIFATTEPHKVP 163 (576)
T ss_pred CCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC--CCCeEEEEEeCChhhhh
Confidence 0000 000011122333333332 1345689999997543 22222 222 2345555 455545444
Q ss_pred hcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh-HHHHHHHHH
Q 009411 289 SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP-IAIVTIARA 349 (535)
Q Consensus 289 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP-Lai~~~~~~ 349 (535)
.........+++.+++.++....+...+......-+ .+....|++.++|.. .|+..+-..
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~-~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS-DAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 323334567889999999998888876642221111 245778899999866 555554333
No 103
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.98 E-value=0.00013 Score=66.24 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=69.3
Q ss_pred CcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhC
Q 009411 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLG 226 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 226 (535)
...+++|-++.++.+.-...+++.+-+.|.||+|+||||-+..+++..-...+=+++.-.++|+...+.-+-..|-.-..
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ 104 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQ 104 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHH
Confidence 35678899998888877777889999999999999999999999988765444466666777766655444333311100
Q ss_pred CCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 009411 227 LKFYEESESGRARKLCERLKKEKKILVILDDIWTN 261 (535)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 261 (535)
-.-.+..++.-.+|||.+++.
T Consensus 105 --------------~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 105 --------------KKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred --------------hhccCCCCceeEEEeeccchh
Confidence 000111245568889998764
No 104
>PRK06620 hypothetical protein; Validated
Probab=97.97 E-value=4.5e-05 Score=70.99 Aligned_cols=135 Identities=16% Similarity=0.042 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (535)
+.+.|+|++|+|||+|++.+++.... .++. .... . . +.+. ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~-------------------~-~-------~~~~--~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFF-------------------N-E-------EILE--KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhh-------------------c-h-------hHHh--cC
Confidence 56899999999999999998776531 1211 0000 0 0 0111 23
Q ss_pred EEEEEeCCCCcccc--cccCCCCCCCCeEEEEeecCchhh------hcccCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 009411 251 ILVILDDIWTNLDL--ENVGIPFGVRGCRVLMTARSQDVL------SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIEN 322 (535)
Q Consensus 251 ~LlVlDdv~~~~~~--~~~~~~~~~~gs~ilvTtR~~~v~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 322 (535)
-+|++||++...+. -.+...+...|..+|+|++..... ........++++++++.++-..++.+.+....-
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l- 165 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSV- 165 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC-
Confidence 57889999743221 111111114577899998865431 111233458999999999988888887742211
Q ss_pred chhHHHHHHHHHHcCCChHHHH
Q 009411 323 NDLKSLAMNIVKACRGLPIAIV 344 (535)
Q Consensus 323 ~~l~~~~~~i~~~~~GlPLai~ 344 (535)
.--+++...|++.+.|.--.+.
T Consensus 166 ~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 166 TISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred CCCHHHHHHHHHHccCCHHHHH
Confidence 1114567788888887654443
No 105
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.97 E-value=5.1e-05 Score=73.28 Aligned_cols=133 Identities=12% Similarity=0.190 Sum_probs=67.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (535)
....+.++|++|+||||+|+.+++.....+......++.++. .++.... .+ .. ......+.+..
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~----~~l~~~~---~g-----~~-~~~~~~~~~~a--- 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER----ADLVGEY---IG-----HT-AQKTREVIKKA--- 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----HHhhhhh---cc-----ch-HHHHHHHHHhc---
Confidence 345678999999999999999988753221111112233322 1111110 00 00 11122233222
Q ss_pred CcEEEEEeCCCCcc----------cccccCCCCC--CCCeEEEEeecCchhh------hcccCC-cceEecCCCCHHHHH
Q 009411 249 KKILVILDDIWTNL----------DLENVGIPFG--VRGCRVLMTARSQDVL------SSKMDC-QNNFLIGVLNESEAR 309 (535)
Q Consensus 249 ~~~LlVlDdv~~~~----------~~~~~~~~~~--~~gs~ilvTtR~~~v~------~~~~~~-~~~~~l~~L~~~ea~ 309 (535)
...+|++|+++... ....+..... .....+++++...... +..... ...+.+++++.++-.
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 23589999997531 1222211111 2233455555443220 001111 246889999999999
Q ss_pred HHHHHHhC
Q 009411 310 DLFKKLVG 317 (535)
Q Consensus 310 ~Lf~~~~~ 317 (535)
+++.+.+.
T Consensus 185 ~Il~~~~~ 192 (261)
T TIGR02881 185 EIAERMVK 192 (261)
T ss_pred HHHHHHHH
Confidence 99988774
No 106
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00032 Score=74.66 Aligned_cols=192 Identities=11% Similarity=0.084 Sum_probs=106.4
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
.....++|-+..++.|..++.++.. ..+.++|+.|+||||+|+.+++.......... ..++.....+.+...
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~i~~~ 85 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKSIDND 85 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHHHHcC
Confidence 4456788999999999999986654 46889999999999999999987543211100 000000111111110
Q ss_pred hCCC---cc--CCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEEEee-cCchhhhc
Q 009411 225 LGLK---FY--EESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLMTA-RSQDVLSS 290 (535)
Q Consensus 225 l~~~---~~--~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~ilvTt-R~~~v~~~ 290 (535)
-... .+ .....+.+..+.+.+. .+++-++|+|+++... .+..+...+ +...+.+|++| ....+...
T Consensus 86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence 0000 00 0011222333332221 2456689999997553 233332111 13455555555 33333222
Q ss_pred ccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHH
Q 009411 291 KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (535)
Q Consensus 291 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 345 (535)
.......+++.+++.++....+...+......- -.+.+..|++.++|.+-.+..
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i-d~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY-EDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 233345789999999999988888763222111 134677899999998754433
No 107
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.95 E-value=0.00015 Score=81.49 Aligned_cols=157 Identities=15% Similarity=0.203 Sum_probs=92.3
Q ss_pred CcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCc----ce-EEEEEeCCCCCHHHHHHHH
Q 009411 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLF----DE-VVYAEVSQRPDVKKIQGQI 221 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f----~~-~~wv~v~~~~~~~~~~~~i 221 (535)
...+++||++++.+++..|......-+.++|++|+|||++|..++........+ .. ++.+.++ .+..
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~a-- 242 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALIA-- 242 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHhh--
Confidence 346789999999999999987666667799999999999999998875432111 12 2222211 1110
Q ss_pred HHHhCCCccCCCchHHHHHHHHHHh-cCCcEEEEEeCCCCcc---------cccccCCCCC-CCCeEEEEeecCchhh--
Q 009411 222 ADKLGLKFYEESESGRARKLCERLK-KEKKILVILDDIWTNL---------DLENVGIPFG-VRGCRVLMTARSQDVL-- 288 (535)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~~---------~~~~~~~~~~-~~gs~ilvTtR~~~v~-- 288 (535)
+.. ........+..+...+. .+++.+|++|+++... +...+..|.. ....++|.+|.....-
T Consensus 243 ----~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~ 317 (852)
T TIGR03346 243 ----GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKY 317 (852)
T ss_pred ----cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHH
Confidence 000 00112223445555553 2468999999997432 1112222322 2334555555544321
Q ss_pred ----hcccCCcceEecCCCCHHHHHHHHHHHh
Q 009411 289 ----SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (535)
Q Consensus 289 ----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (535)
.........+.++..+.++...++....
T Consensus 318 ~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 318 IEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1112234578899999999999998664
No 108
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.92 E-value=0.00071 Score=71.63 Aligned_cols=178 Identities=12% Similarity=0.098 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (535)
..+.|+|..|+|||.|++.+++.......-..++|++. .++..++...+... ....+.+.+. +.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~--------~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG--------KGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc--------cHHHHHHHhh--cC
Confidence 45899999999999999999998653211233566643 34444544443211 1223334443 23
Q ss_pred EEEEEeCCCCcc---cccc-cCCCCC---CCCeEEEEeecCchh--------hhcccCCcceEecCCCCHHHHHHHHHHH
Q 009411 251 ILVILDDIWTNL---DLEN-VGIPFG---VRGCRVLMTARSQDV--------LSSKMDCQNNFLIGVLNESEARDLFKKL 315 (535)
Q Consensus 251 ~LlVlDdv~~~~---~~~~-~~~~~~---~~gs~ilvTtR~~~v--------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 315 (535)
=+|||||+.... .++. +...++ ..|..|||||+...- +...+.....+.+.+.+.+.-.+++.+.
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 589999996442 2221 211122 446678888876421 0112344568999999999999999988
Q ss_pred hCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhh------cC--CHHHHHHHHHHh
Q 009411 316 VGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALR------NK--NTFEWKSALREL 365 (535)
Q Consensus 316 ~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~------~~--~~~~w~~~l~~l 365 (535)
+......- -.+++..|++.+.+..-.|.-+-..|. ++ +...-+.+++.+
T Consensus 459 a~~r~l~l-~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~ 515 (617)
T PRK14086 459 AVQEQLNA-PPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDL 515 (617)
T ss_pred HHhcCCCC-CHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 85322111 145777888888776544433322221 22 455555666554
No 109
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.92 E-value=0.00012 Score=82.14 Aligned_cols=157 Identities=15% Similarity=0.210 Sum_probs=91.7
Q ss_pred CcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccC---c-c-eEEEEEeCCCCCHHHHHHHH
Q 009411 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKL---F-D-EVVYAEVSQRPDVKKIQGQI 221 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~---f-~-~~~wv~v~~~~~~~~~~~~i 221 (535)
...+++||+.++.++++.|......-+.++|++|+|||++|+.++........ . . .++++.++.- ..
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~a-- 247 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------VA-- 247 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------hh--
Confidence 35678999999999999998766667779999999999999999987642211 1 1 2333333221 00
Q ss_pred HHHhCCCccCCCchHHHHHHHHHHh-cCCcEEEEEeCCCCcc---------cccccCCCCC-CCCeEEEEeecCchhh--
Q 009411 222 ADKLGLKFYEESESGRARKLCERLK-KEKKILVILDDIWTNL---------DLENVGIPFG-VRGCRVLMTARSQDVL-- 288 (535)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~~---------~~~~~~~~~~-~~gs~ilvTtR~~~v~-- 288 (535)
+.. ........+..+.+.+. .+++.+|++|+++... +...+..|.- ....++|-+|...+..
T Consensus 248 ----g~~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~ 322 (857)
T PRK10865 248 ----GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQY 322 (857)
T ss_pred ----ccc-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHH
Confidence 000 00111223344444432 2467999999997442 1122223332 3345566665554421
Q ss_pred ----hcccCCcceEecCCCCHHHHHHHHHHHh
Q 009411 289 ----SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (535)
Q Consensus 289 ----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (535)
.........+.+...+.++...+++...
T Consensus 323 ~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 323 IEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred hhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1111233466777778999999887654
No 110
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.90 E-value=0.00026 Score=74.90 Aligned_cols=199 Identities=19% Similarity=0.268 Sum_probs=107.0
Q ss_pred CCcccccccHHHHHHHHH---HhcC---------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 146 KGYEAFESRMSTLNDVIN---ALKN---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~---~L~~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
....++.|-+...+++.+ ++.. ...+-+.++|++|+|||+||+.+++..... ++.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~--- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISG--- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccH---
Confidence 345567777665554443 3321 223468899999999999999999876432 222221
Q ss_pred HHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc----------------ccccCCC---C-CC
Q 009411 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD----------------LENVGIP---F-GV 273 (535)
Q Consensus 214 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----------------~~~~~~~---~-~~ 273 (535)
.++.... .+ ........+.+......+++|+||+++.... +..+... + ..
T Consensus 122 -~~~~~~~---~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 122 -SDFVEMF---VG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred -HHHHHHH---hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111111 01 0112334444444445679999999954210 1111101 1 13
Q ss_pred CCeEEEEeecCchhhhc-cc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC-hHHHHHHHH
Q 009411 274 RGCRVLMTARSQDVLSS-KM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL-PIAIVTIAR 348 (535)
Q Consensus 274 ~gs~ilvTtR~~~v~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~Gl-PLai~~~~~ 348 (535)
.+..||.||........ .. .-...+.++..+.++-.++|+.++.......+ .....+++.+.|. +--|..+..
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~sgadl~~l~~ 269 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFSGADLANLLN 269 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCCHHHHHHHHH
Confidence 45566667765432211 11 22357889999999999999887753322111 1244788888774 344443332
Q ss_pred ---H--hh-cC---CHHHHHHHHHHhc
Q 009411 349 ---A--LR-NK---NTFEWKSALRELT 366 (535)
Q Consensus 349 ---~--L~-~~---~~~~w~~~l~~l~ 366 (535)
. .+ ++ +......+++...
T Consensus 270 eA~~~a~~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 270 EAALLAARKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 1 11 22 5666777766643
No 111
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.88 E-value=6.3e-05 Score=82.45 Aligned_cols=157 Identities=20% Similarity=0.239 Sum_probs=93.1
Q ss_pred cccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhcccc-C---cceEEEEEeCCCCCHHHHHHHHHH
Q 009411 148 YEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADK-L---FDEVVYAEVSQRPDVKKIQGQIAD 223 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-~---f~~~~wv~v~~~~~~~~~~~~i~~ 223 (535)
..+++||++++.++++.|......-+.++|++|+|||++|+.+++...... . .++.+|.. +...+ +.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc
Confidence 457899999999999999865555667899999999999999997643221 1 13344421 11111 10
Q ss_pred HhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCc----------ccccccCCCCC-CCCeEEEEeecCchhh----
Q 009411 224 KLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN----------LDLENVGIPFG-VRGCRVLMTARSQDVL---- 288 (535)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~----------~~~~~~~~~~~-~~gs~ilvTtR~~~v~---- 288 (535)
+.. ...........+...+...++.+|++|+++.. .+...+..|.. ...-++|-+|......
T Consensus 256 --G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~ 332 (758)
T PRK11034 256 --GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFE 332 (758)
T ss_pred --ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhh
Confidence 110 01112233445555555456789999999642 11111112222 3345566555544321
Q ss_pred --hcccCCcceEecCCCCHHHHHHHHHHHh
Q 009411 289 --SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (535)
Q Consensus 289 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (535)
.........+.+++++.++..+++....
T Consensus 333 ~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 333 KDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1112234589999999999999998654
No 112
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.87 E-value=0.00015 Score=74.52 Aligned_cols=171 Identities=19% Similarity=0.255 Sum_probs=96.1
Q ss_pred CcccccccHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 147 GYEAFESRMSTLNDVINALK----N---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
.+.++.|.+..+++|.+.+. . ...+.+.++|++|+|||++|+.+++.... .| +.+...
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--~f-----i~V~~s-- 251 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--TF-----LRVVGS-- 251 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--CE-----EEEecc--
Confidence 34566788888887777653 1 23456889999999999999999997653 23 222111
Q ss_pred HHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc------------c----ccccCC---CC-CC
Q 009411 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL------------D----LENVGI---PF-GV 273 (535)
Q Consensus 214 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~----~~~~~~---~~-~~ 273 (535)
++.... ++ ........++.....+.+++|+||+++... . +..+.. .+ ..
T Consensus 252 --eL~~k~---~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 252 --ELIQKY---LG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred --hhhhhh---cc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 111110 00 011223344444444578899999975321 0 001100 01 13
Q ss_pred CCeEEEEeecCchhhhcc-c---CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 009411 274 RGCRVLMTARSQDVLSSK-M---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (535)
Q Consensus 274 ~gs~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~Gl 339 (535)
.+.+||+||......... . .....+.++..+.++-.++|..++.......+. ....++..+.|.
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~ 388 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDEL 388 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCC
Confidence 456788888765543221 1 223578999999999999999877432211110 134556666554
No 113
>CHL00181 cbbX CbbX; Provisional
Probab=97.87 E-value=0.00036 Score=68.01 Aligned_cols=131 Identities=12% Similarity=0.112 Sum_probs=69.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (535)
..+.++|++|+|||++|+.+++.....+.-...-|+.++. .++.... .+.. . .....+.+.. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~---~g~~-----~-~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQY---IGHT-----A-PKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHH---hccc-----h-HHHHHHHHHc---cC
Confidence 3578999999999999999988754322221112444441 2222221 1110 0 1122233322 23
Q ss_pred EEEEEeCCCCc-----------ccccccCCCC--CCCCeEEEEeecCchhhh-------cccCCcceEecCCCCHHHHHH
Q 009411 251 ILVILDDIWTN-----------LDLENVGIPF--GVRGCRVLMTARSQDVLS-------SKMDCQNNFLIGVLNESEARD 310 (535)
Q Consensus 251 ~LlVlDdv~~~-----------~~~~~~~~~~--~~~gs~ilvTtR~~~v~~-------~~~~~~~~~~l~~L~~~ea~~ 310 (535)
-+|++|++... +....+.... ...+.+||+++....... ........+.+++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 59999999642 1111121111 134566777765433210 011123478999999999999
Q ss_pred HHHHHhC
Q 009411 311 LFKKLVG 317 (535)
Q Consensus 311 Lf~~~~~ 317 (535)
++...+.
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9888764
No 114
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0017 Score=63.01 Aligned_cols=196 Identities=18% Similarity=0.264 Sum_probs=117.0
Q ss_pred CCcccccccHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC
Q 009411 146 KGYEAFESRMSTLNDVINALK----N---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP 212 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~ 212 (535)
..+..+-|-++.+++|.+... + +.++-|.++|++|.|||-||++++++-... |+.+..+
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvgS- 219 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVGS- 219 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEeccH-
Confidence 345566688888888887654 1 346778899999999999999999987643 3443321
Q ss_pred CHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc------------c--------ccccCCCCC
Q 009411 213 DVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL------------D--------LENVGIPFG 272 (535)
Q Consensus 213 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~--------~~~~~~~~~ 272 (535)
++.++.+ | ........+++.-+.+.++.|.+|.++... + +.++.-..+
T Consensus 220 ---ElVqKYi---G------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 ---ELVQKYI---G------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred ---HHHHHHh---c------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 2333221 1 112345566666666789999999986320 0 122211112
Q ss_pred CCCeEEEEeecCchhhh-ccc---CCcceEecCCCCHHHHHHHHHHHhCC--CCCCchhHHHHHHHHHHcCCCh----HH
Q 009411 273 VRGCRVLMTARSQDVLS-SKM---DCQNNFLIGVLNESEARDLFKKLVGD--KIENNDLKSLAMNIVKACRGLP----IA 342 (535)
Q Consensus 273 ~~gs~ilvTtR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~l~~~~~~i~~~~~GlP----La 342 (535)
..+.|||..|...+.+. ..+ .-.+.|+++.-+.+.=.++|+-++.. ..+.-+ .+.|++.|.|.- -|
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHHH
Confidence 56789999887766542 122 22357888766666666777766642 223333 345667777664 44
Q ss_pred HHHHHHHhh---cC---CHHHHHHHHHHh
Q 009411 343 IVTIARALR---NK---NTFEWKSALREL 365 (535)
Q Consensus 343 i~~~~~~L~---~~---~~~~w~~~l~~l 365 (535)
+.+=|+++. .+ +.++...+.+..
T Consensus 364 ictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 364 ICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 555556554 12 555666665554
No 115
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.83 E-value=0.00036 Score=68.08 Aligned_cols=130 Identities=13% Similarity=0.122 Sum_probs=69.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcE
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKI 251 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 251 (535)
-+.++|++|+|||++|+.+++.....+.....-++.++. .++...+ .+. .. .....+.+.. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~~~~---~g~-----~~-~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLVGQY---IGH-----TA-PKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHhHhh---ccc-----ch-HHHHHHHHHc---cCc
Confidence 578999999999999988877654332222112444432 1222211 111 11 1222333332 236
Q ss_pred EEEEeCCCCc-----------ccccccCCCC--CCCCeEEEEeecCchhhhcc-------cCCcceEecCCCCHHHHHHH
Q 009411 252 LVILDDIWTN-----------LDLENVGIPF--GVRGCRVLMTARSQDVLSSK-------MDCQNNFLIGVLNESEARDL 311 (535)
Q Consensus 252 LlVlDdv~~~-----------~~~~~~~~~~--~~~gs~ilvTtR~~~v~~~~-------~~~~~~~~l~~L~~~ea~~L 311 (535)
+|+||++... +.+..+.... ...+.+||+++.....-... ......+.+++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999999632 1111221111 13456666666543211000 01135789999999999999
Q ss_pred HHHHhC
Q 009411 312 FKKLVG 317 (535)
Q Consensus 312 f~~~~~ 317 (535)
+...+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 988764
No 116
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.0004 Score=68.96 Aligned_cols=163 Identities=12% Similarity=0.112 Sum_probs=89.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCC-----cc---CCCchHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLK-----FY---EESESGRARKL 241 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~-----~~---~~~~~~~~~~l 241 (535)
...+.++|+.|+|||++|..++...--.+.... ..+......+.+...-..+ .. ..-..+.++.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l 94 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGG-------GACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVREL 94 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHH
Confidence 456889999999999999999887543211000 0000001111111000000 00 00122334444
Q ss_pred HHHHh----cCCcEEEEEeCCCCcc--c----ccccCCCCCCCCeEEEEeecCch-hhhcccCCcceEecCCCCHHHHHH
Q 009411 242 CERLK----KEKKILVILDDIWTNL--D----LENVGIPFGVRGCRVLMTARSQD-VLSSKMDCQNNFLIGVLNESEARD 310 (535)
Q Consensus 242 ~~~l~----~~~~~LlVlDdv~~~~--~----~~~~~~~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~ 310 (535)
.+.+. .+++-++|+|+++... . +..+..| ..++.+|+||.+.. +.....+....+.+.+++.+++.+
T Consensus 95 ~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP--p~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~ 172 (328)
T PRK05707 95 VSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP--SGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQ 172 (328)
T ss_pred HHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCC--CCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHH
Confidence 44432 1344566789997643 2 3333333 34667777776653 333333445689999999999999
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 009411 311 LFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (535)
Q Consensus 311 Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 346 (535)
.+....... . .+.+..++..++|.|+....+
T Consensus 173 ~L~~~~~~~-~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 173 WLQQALPES-D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHhcccC-C----hHHHHHHHHHcCCCHHHHHHH
Confidence 998764211 1 223567889999999755433
No 117
>CHL00176 ftsH cell division protein; Validated
Probab=97.78 E-value=0.00037 Score=75.12 Aligned_cols=196 Identities=20% Similarity=0.303 Sum_probs=106.5
Q ss_pred cccccccHHHH---HHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHH
Q 009411 148 YEAFESRMSTL---NDVINALKNP---------DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK 215 (535)
Q Consensus 148 ~~~~~gR~~~~---~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~ 215 (535)
+.++.|.++.. .++++.+... ..+-+.++|++|+|||+||+.+++..... |+.++..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s---- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS---- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH----
Confidence 34556665544 4444444422 23568899999999999999999876432 2333211
Q ss_pred HHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc------------c----ccccCCC---C-CCCC
Q 009411 216 KIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL------------D----LENVGIP---F-GVRG 275 (535)
Q Consensus 216 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~----~~~~~~~---~-~~~g 275 (535)
++.... .+ ........+........+++|++|+++... . +..+... + ...+
T Consensus 251 ~f~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFVEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHHHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111110 00 011223444455455678999999996431 0 1111111 1 2445
Q ss_pred eEEEEeecCchhhhc-cc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChHHHHHHHH--
Q 009411 276 CRVLMTARSQDVLSS-KM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRG-LPIAIVTIAR-- 348 (535)
Q Consensus 276 s~ilvTtR~~~v~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~G-lPLai~~~~~-- 348 (535)
..||.||........ .. .-...+.++..+.++-.++++.++......+ ......+++.+.| .+--|..+..
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~sgaDL~~lvneA 399 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGFSGADLANLLNEA 399 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 667777766443211 11 1235788999999999999998875422222 2235678888887 3322322222
Q ss_pred -Hh--h-cC---CHHHHHHHHHHh
Q 009411 349 -AL--R-NK---NTFEWKSALREL 365 (535)
Q Consensus 349 -~L--~-~~---~~~~w~~~l~~l 365 (535)
.. + ++ +..+...++++.
T Consensus 400 al~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 400 AILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHH
Confidence 11 1 21 556666666664
No 118
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00084 Score=70.53 Aligned_cols=152 Identities=20% Similarity=0.279 Sum_probs=91.2
Q ss_pred ccccccHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHH
Q 009411 149 EAFESRMSTLNDVINALK------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 222 (535)
.+-+|-++..++|++++. +-+.++++.+|++|+|||++|+.++.....+ | +-++++.-.+..++-..--
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhcccce
Confidence 344688888999999886 3456899999999999999999999987643 3 2456776666655432211
Q ss_pred HHhCCCccCCCchHHHHHHHHHHhc--CCcEEEEEeCCCCcc---------ccccc--------------CCCCCCCCeE
Q 009411 223 DKLGLKFYEESESGRARKLCERLKK--EKKILVILDDIWTNL---------DLENV--------------GIPFGVRGCR 277 (535)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~l~~~l~~--~~~~LlVlDdv~~~~---------~~~~~--------------~~~~~~~gs~ 277 (535)
..+| .. -.++.+.|+. -.+-|+.+|.|+..- .+-++ ..|+. =|+
T Consensus 486 TYVG------AM---PGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~D--LSk 554 (906)
T KOG2004|consen 486 TYVG------AM---PGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVD--LSK 554 (906)
T ss_pred eeec------cC---ChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccc--hhh
Confidence 1111 11 1244444432 245688899986431 11111 12222 255
Q ss_pred EEEe-ecCc-h-hhhcccCCcceEecCCCCHHHHHHHHHHHh
Q 009411 278 VLMT-ARSQ-D-VLSSKMDCQNNFLIGVLNESEARDLFKKLV 316 (535)
Q Consensus 278 ilvT-tR~~-~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (535)
|++. |-|. . +.......-..|++.+-..+|-..+-.++.
T Consensus 555 VLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred eEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 5543 2221 1 112233445689999999999888777665
No 119
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.73 E-value=0.00014 Score=62.38 Aligned_cols=89 Identities=27% Similarity=0.184 Sum_probs=51.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (535)
..+.|+|++|+||||+++.++....... ..+++++.+........... ...................+.......+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999998876432 23556655443322111111 11111111122223334455555554335
Q ss_pred EEEEEeCCCCcc
Q 009411 251 ILVILDDIWTNL 262 (535)
Q Consensus 251 ~LlVlDdv~~~~ 262 (535)
.+|++|++....
T Consensus 80 ~viiiDei~~~~ 91 (148)
T smart00382 80 DVLILDEITSLL 91 (148)
T ss_pred CEEEEECCcccC
Confidence 999999998654
No 120
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.73 E-value=5.6e-05 Score=64.49 Aligned_cols=69 Identities=22% Similarity=0.269 Sum_probs=41.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCC-cE
Q 009411 173 IGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK-KI 251 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~-~~ 251 (535)
|.|+|++|+|||++|+.+++..... .+.++.+...+. ........+..+.+...... +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~-----~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP-----FIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE-----EEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc-----cccccccccccc---------------cccccccccccccccccccccce
Confidence 5799999999999999999997521 234433221100 11112223334444443333 79
Q ss_pred EEEEeCCCCc
Q 009411 252 LVILDDIWTN 261 (535)
Q Consensus 252 LlVlDdv~~~ 261 (535)
+|++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999999643
No 121
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.72 E-value=0.0039 Score=69.67 Aligned_cols=155 Identities=22% Similarity=0.255 Sum_probs=82.4
Q ss_pred cccccHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHH
Q 009411 150 AFESRMSTLNDVINALK------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 223 (535)
..+|.++..+.|.+++. ....+++.++|++|+|||++|+.+++..... |- -++++...+..++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~--~~---~i~~~~~~~~~~i~g~--- 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK--FV---RFSLGGVRDEAEIRGH--- 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC--eE---EEeCCCcccHHHHcCC---
Confidence 46788888888887654 2234689999999999999999999987532 31 2223332232222110
Q ss_pred HhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc---------ccc---------cC-----CCCCCCCeEEEE
Q 009411 224 KLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD---------LEN---------VG-----IPFGVRGCRVLM 280 (535)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~---------~~~---------~~-----~~~~~~gs~ilv 280 (535)
......... ........... ..+-+++||.++.... +-. +. .+....+..+|.
T Consensus 393 --~~~~~g~~~-g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~ 468 (775)
T TIGR00763 393 --RRTYVGAMP-GRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA 468 (775)
T ss_pred --CCceeCCCC-chHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEE
Confidence 000011111 11112222222 2334789999864421 100 10 011112344555
Q ss_pred eecCchhh-hcccCCcceEecCCCCHHHHHHHHHHHh
Q 009411 281 TARSQDVL-SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (535)
Q Consensus 281 TtR~~~v~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (535)
||...... .........+.+.+++.++-.+++....
T Consensus 469 TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 469 TANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred ecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 55443221 2223444689999999999888887654
No 122
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=0.00066 Score=70.33 Aligned_cols=151 Identities=12% Similarity=0.149 Sum_probs=88.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (535)
.-+.|+|+.|+|||+|++.+++..... -..+++++. ..+...+...+... ........+. ..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~--------~~~~f~~~~~--~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG--------EMQRFRQFYR--NV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc--------hHHHHHHHcc--cC
Confidence 568899999999999999999987532 233556642 33444554444311 1122333332 34
Q ss_pred EEEEEeCCCCccc--c--cccCCCCC---CCCeEEEEeecCchh-h-------hcccCCcceEecCCCCHHHHHHHHHHH
Q 009411 251 ILVILDDIWTNLD--L--ENVGIPFG---VRGCRVLMTARSQDV-L-------SSKMDCQNNFLIGVLNESEARDLFKKL 315 (535)
Q Consensus 251 ~LlVlDdv~~~~~--~--~~~~~~~~---~~gs~ilvTtR~~~v-~-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 315 (535)
-+|++||+..... + +.+...++ ..|..||+||....- . .........+.+.+++.++-..++.+.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 5899999865321 1 11211111 345678888865311 1 111233468899999999999999987
Q ss_pred hCCCCCCchhHHHHHHHHHHcCCCh
Q 009411 316 VGDKIENNDLKSLAMNIVKACRGLP 340 (535)
Q Consensus 316 ~~~~~~~~~l~~~~~~i~~~~~GlP 340 (535)
+...... --.++...|+..+.|.-
T Consensus 284 ~~~~~~~-l~~evl~~la~~~~~di 307 (445)
T PRK12422 284 AEALSIR-IEETALDFLIEALSSNV 307 (445)
T ss_pred HHHcCCC-CCHHHHHHHHHhcCCCH
Confidence 7432111 11345666777777543
No 123
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00049 Score=72.46 Aligned_cols=153 Identities=22% Similarity=0.274 Sum_probs=91.9
Q ss_pred cccccHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHH
Q 009411 150 AFESRMSTLNDVINALK------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 223 (535)
+-+|-++..++|++.|. .-..++++++|++|+|||+|++.++.....+ | +-++++.-.+..++-..=-.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhcccccc
Confidence 34688888999999886 2345899999999999999999999987744 4 33455555554443322111
Q ss_pred HhCCCccCCCchHHHHHHHHHHh--cCCcEEEEEeCCCCcc---------c-ccc-------------cCCCCCCCCeEE
Q 009411 224 KLGLKFYEESESGRARKLCERLK--KEKKILVILDDIWTNL---------D-LEN-------------VGIPFGVRGCRV 278 (535)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~--~~~~~LlVlDdv~~~~---------~-~~~-------------~~~~~~~~gs~i 278 (535)
.+| +.. .++.+.++ +.+.-|++||.++... . ++. +..++.-.....
T Consensus 399 YIG------amP---GrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 399 YIG------AMP---GKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ccc------cCC---hHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 111 111 13333332 1356799999986431 1 111 112222223333
Q ss_pred EEeecCch-hhhcccCCcceEecCCCCHHHHHHHHHHHh
Q 009411 279 LMTARSQD-VLSSKMDCQNNFLIGVLNESEARDLFKKLV 316 (535)
Q Consensus 279 lvTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (535)
|.|+.+-+ +....+....+|++.+-+++|=.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44444333 223345566799999999999888887765
No 124
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.64 E-value=0.002 Score=59.82 Aligned_cols=188 Identities=16% Similarity=0.148 Sum_probs=107.5
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeC-CCCCHHHHHHHHHHHhCCCccCCC-
Q 009411 156 STLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVS-QRPDVKKIQGQIADKLGLKFYEES- 233 (535)
Q Consensus 156 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~~~~~- 233 (535)
+.+..+... ..++.+++.++|.-|+|||.+.+.+.......+ ++-+.+. +..+...+...++..+..++....
T Consensus 38 e~l~~l~~~-i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~----~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~ 112 (269)
T COG3267 38 EALLMLHAA-IADGQGILAVTGEVGSGKTVLRRALLASLNEDQ----VAVVVIDKPTLSDATLLEAIVADLESQPKVNVN 112 (269)
T ss_pred HHHHHHHHH-HhcCCceEEEEecCCCchhHHHHHHHHhcCCCc----eEEEEecCcchhHHHHHHHHHHHhccCccchhH
Confidence 334444333 345567999999999999999996655544221 1223333 345677788888888876322211
Q ss_pred -ch-HHHHHHHHHHhcCCc-EEEEEeCCCCc--ccccccCCCCC-----CCCeEEEEeecCc--------hhhhcccCCc
Q 009411 234 -ES-GRARKLCERLKKEKK-ILVILDDIWTN--LDLENVGIPFG-----VRGCRVLMTARSQ--------DVLSSKMDCQ 295 (535)
Q Consensus 234 -~~-~~~~~l~~~l~~~~~-~LlVlDdv~~~--~~~~~~~~~~~-----~~gs~ilvTtR~~--------~v~~~~~~~~ 295 (535)
.. ...+.+.....++++ ..+++|++.+. +.++.+....+ ..--+|+.....+ .... .....
T Consensus 113 ~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e-~~~R~ 191 (269)
T COG3267 113 AVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRE-LEQRI 191 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHh-hhheE
Confidence 11 122334444455677 99999999754 23333211111 1112233333221 1101 01111
Q ss_pred ce-EecCCCCHHHHHHHHHHHhCCCC--CCchhHHHHHHHHHHcCCChHHHHHHHHH
Q 009411 296 NN-FLIGVLNESEARDLFKKLVGDKI--ENNDLKSLAMNIVKACRGLPIAIVTIARA 349 (535)
Q Consensus 296 ~~-~~l~~L~~~ea~~Lf~~~~~~~~--~~~~l~~~~~~i~~~~~GlPLai~~~~~~ 349 (535)
.. |.+.|++.++...+++.+..... .+---.+....|.....|.|.+|..++..
T Consensus 192 ~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 192 DIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred EEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 23 99999999999999988774221 11112345678999999999999887754
No 125
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.0015 Score=65.79 Aligned_cols=179 Identities=18% Similarity=0.196 Sum_probs=101.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (535)
....+.|+|..|.|||.|++.+++.......=..+++++ .......++..+.. .......+.. +
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~--------~~~~~Fk~~y-~- 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD--------NEMEKFKEKY-S- 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh--------hhHHHHHHhh-c-
Confidence 367899999999999999999999877542222344443 22333333333321 1233444444 2
Q ss_pred CcEEEEEeCCCCccc---ccc-cCCCCC---CCCeEEEEeecCchhh--------hcccCCcceEecCCCCHHHHHHHHH
Q 009411 249 KKILVILDDIWTNLD---LEN-VGIPFG---VRGCRVLMTARSQDVL--------SSKMDCQNNFLIGVLNESEARDLFK 313 (535)
Q Consensus 249 ~~~LlVlDdv~~~~~---~~~-~~~~~~---~~gs~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~ea~~Lf~ 313 (535)
-=++++||++.... ++. +...++ ..|-.||+|++...-. .......-.+.+.+.+.+....++.
T Consensus 176 -~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 176 -LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred -cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 23899999965322 222 222222 4455899999765321 1123344689999999999999999
Q ss_pred HHhCCC--CCCchhHHHHHHHHHHcCC----ChHHHHHHHHHhh--cC--CHHHHHHHHHHhcC
Q 009411 314 KLVGDK--IENNDLKSLAMNIVKACRG----LPIAIVTIARALR--NK--NTFEWKSALRELTR 367 (535)
Q Consensus 314 ~~~~~~--~~~~~l~~~~~~i~~~~~G----lPLai~~~~~~L~--~~--~~~~w~~~l~~l~~ 367 (535)
+.+... ..++ ++..-|++.... +.-|+..+..+-. ++ +......++..+..
T Consensus 255 kka~~~~~~i~~---ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 255 KKAEDRGIEIPD---EVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLR 315 (408)
T ss_pred HHHHhcCCCCCH---HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhc
Confidence 877421 2222 234444444433 3444444333332 21 56666666666544
No 126
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0024 Score=62.98 Aligned_cols=168 Identities=17% Similarity=0.174 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccc-----------------CcceEEEEEeCCCCCHHHH
Q 009411 156 STLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADK-----------------LFDEVVYAEVSQRPDVKKI 217 (535)
Q Consensus 156 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~-----------------~f~~~~wv~v~~~~~~~~~ 217 (535)
...+.+...+..++. ..+.++|+.|+||+++|..+++..-..+ |.| ..|+.......
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~---- 85 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRT---- 85 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcc----
Confidence 345666666666654 4688999999999999999887643321 111 11221000000
Q ss_pred HHHHHHHhCCCccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc------cccccCCCCCCCCeEEEEeecCc-h
Q 009411 218 QGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTNL------DLENVGIPFGVRGCRVLMTARSQ-D 286 (535)
Q Consensus 218 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~------~~~~~~~~~~~~gs~ilvTtR~~-~ 286 (535)
+......-..+.+..+.+.+. .+++-++|+|+++... -++.+..| ..++.+|++|.+. .
T Consensus 86 --------~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP--p~~~~fiL~~~~~~~ 155 (319)
T PRK08769 86 --------GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEP--SPGRYLWLISAQPAR 155 (319)
T ss_pred --------cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCC--CCCCeEEEEECChhh
Confidence 000000011233444444442 2456799999997653 13334344 3466666666654 4
Q ss_pred hhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHH
Q 009411 287 VLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (535)
Q Consensus 287 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 345 (535)
+.....+....+.+.+++.+++.+.+... + .+ ...+..++..++|.|+....
T Consensus 156 lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~--~~----~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 156 LPATIRSRCQRLEFKLPPAHEALAWLLAQ-G--VS----ERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred CchHHHhhheEeeCCCcCHHHHHHHHHHc-C--CC----hHHHHHHHHHcCCCHHHHHH
Confidence 43333344568899999999999888754 2 11 12366789999999986543
No 127
>PRK08116 hypothetical protein; Validated
Probab=97.61 E-value=0.0002 Score=69.13 Aligned_cols=100 Identities=18% Similarity=0.209 Sum_probs=60.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (535)
..+.++|.+|+|||.||..+++....+ -..+++++ ..+++..+........ ......+.+.+.. -
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~-~- 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVN-A- 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc-----cccHHHHHHHhcC-C-
Confidence 458899999999999999999987643 23456664 3455556555443211 1123345555543 2
Q ss_pred EEEEEeCCCC--cccccc--cCCCCC---CCCeEEEEeecCc
Q 009411 251 ILVILDDIWT--NLDLEN--VGIPFG---VRGCRVLMTARSQ 285 (535)
Q Consensus 251 ~LlVlDdv~~--~~~~~~--~~~~~~---~~gs~ilvTtR~~ 285 (535)
=||||||+.. ...|.. +...++ ..+..+||||...
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3899999942 333332 111111 3556688888754
No 128
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.60 E-value=0.00065 Score=67.54 Aligned_cols=102 Identities=15% Similarity=0.244 Sum_probs=67.7
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcce-EEEEEeCCCC-CHHHHHHHHHHHhCCCccCCCc
Q 009411 158 LNDVINALKN-PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDE-VVYAEVSQRP-DVKKIQGQIADKLGLKFYEESE 234 (535)
Q Consensus 158 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~-~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~ 234 (535)
..++++.+.. ...+-+.|+|.+|+|||||++.+++..... +-+. ++|+.+++.. ...++.+.+...+.....+.+.
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 3456777762 333566899999999999999999876543 3344 4677777655 6788888888777654433222
Q ss_pred hH------HHHHHHHHH-hcCCcEEEEEeCCCC
Q 009411 235 SG------RARKLCERL-KKEKKILVILDDIWT 260 (535)
Q Consensus 235 ~~------~~~~l~~~l-~~~~~~LlVlDdv~~ 260 (535)
.. .+....+++ ..+++++||+|++..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 21 222333333 348999999999853
No 129
>PRK10536 hypothetical protein; Provisional
Probab=97.58 E-value=0.00034 Score=65.84 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=42.3
Q ss_pred CcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEE
Q 009411 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVY 205 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~w 205 (535)
...++.+|......++.++.+. .++.+.|++|+|||+||..+..+.-..+.|+.++-
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 3455677888888888888764 58999999999999999999886332233554443
No 130
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0027 Score=65.72 Aligned_cols=178 Identities=15% Similarity=0.203 Sum_probs=100.7
Q ss_pred cccccccHHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHH
Q 009411 148 YEAFESRMSTLNDVINALK---N---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK 215 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~ 215 (535)
+..+-|-++.++++.+.+. . ...+-|.+||++|.|||.||+.++++..+- ++.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch----
Confidence 4566788888888777654 1 235678899999999999999999998764 3333332
Q ss_pred HHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--------c-----cccc-------CCC-CCCC
Q 009411 216 KIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--------D-----LENV-------GIP-FGVR 274 (535)
Q Consensus 216 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--------~-----~~~~-------~~~-~~~~ 274 (535)
+|...+. ...+..+..+++.-.+.-+|++++|+++-.. + ..++ ... ..+.
T Consensus 258 ----eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 258 ----EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred ----hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 1111111 1234456677777666789999999996321 1 1111 111 1122
Q ss_pred CeEEEEe-ecCchhh---hcccCCcceEecCCCCHHHHHHHHHHHhCC--CCCCchhHHHHHHHHHHcCCC----hHHHH
Q 009411 275 GCRVLMT-ARSQDVL---SSKMDCQNNFLIGVLNESEARDLFKKLVGD--KIENNDLKSLAMNIVKACRGL----PIAIV 344 (535)
Q Consensus 275 gs~ilvT-tR~~~v~---~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~l~~~~~~i~~~~~Gl----PLai~ 344 (535)
+.-||-+ +|...+- .+...-.+.|.+.--+...-.++++..+.+ ....-+ .++|++..-|. -.|+.
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGfVGADL~AL~ 404 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD----FKQLAKLTPGFVGADLMALC 404 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCccchhHHHHH
Confidence 3333333 3443321 122233457888877777777777766642 122223 34566666554 34444
Q ss_pred HHHHH
Q 009411 345 TIARA 349 (535)
Q Consensus 345 ~~~~~ 349 (535)
..|+.
T Consensus 405 ~~Aa~ 409 (802)
T KOG0733|consen 405 REAAF 409 (802)
T ss_pred HHHHH
Confidence 44443
No 131
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.53 E-value=0.0004 Score=74.40 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=41.7
Q ss_pred cCCcccccccHHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 145 IKGYEAFESRMSTLNDVINALKN-----PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 145 ~~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
|.....++|.++.++++..++.. ...+++.|+|++|+||||+++.++....
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 44567789999999999988873 2345799999999999999999998754
No 132
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0047 Score=60.98 Aligned_cols=171 Identities=13% Similarity=0.114 Sum_probs=96.2
Q ss_pred HHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCC-----c-c
Q 009411 158 LNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLK-----F-Y 230 (535)
Q Consensus 158 ~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~-----~-~ 230 (535)
-+.|...+..+. ...+.++|+.|+||+++|..++...--..... ...++.....+.+...-..+ + .
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEPID 83 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEcccc
Confidence 455666666555 36777999999999999999987653221110 00111111111111100000 0 0
Q ss_pred -CCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--c----ccccCCCCCCCCeEEEEeecCc-hhhhcccCCcceE
Q 009411 231 -EESESGRARKLCERLK----KEKKILVILDDIWTNL--D----LENVGIPFGVRGCRVLMTARSQ-DVLSSKMDCQNNF 298 (535)
Q Consensus 231 -~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~----~~~~~~~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~ 298 (535)
..-..+.++.+.+.+. .+++-++|+|+++... . +..+.-| ..++.+|++|.+. .+.....+....+
T Consensus 84 ~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP--p~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 84 NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEP--RPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCC--CCCeEEEEEECChHhCchHHHhhceEE
Confidence 0112334445555443 2456688899997653 2 3333344 4566677666654 3433333445689
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHH
Q 009411 299 LIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (535)
Q Consensus 299 ~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 343 (535)
.+.+++.++..+.+....+.. . ..+...+..++|.|+.+
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~~---~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSAE---I---SEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhccC---h---HHHHHHHHHcCCCHHHH
Confidence 999999999999988764221 1 12557788999999633
No 133
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.50 E-value=0.002 Score=65.94 Aligned_cols=134 Identities=22% Similarity=0.171 Sum_probs=80.5
Q ss_pred cHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCC
Q 009411 154 RMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEES 233 (535)
Q Consensus 154 R~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~ 233 (535)
|..-+.++.+.+..... ++.|.|+-++||||+++.+....... .+++..-+...-..-+.+.
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~------------ 83 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDL------------ 83 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHH------------
Confidence 34455666666554433 99999999999999996666554432 4555433322111111111
Q ss_pred chHHHHHHHHHHhcCCcEEEEEeCCCCcccccccCCCCC--CCCeEEEEeecCchhh-----hcccCCcceEecCCCCHH
Q 009411 234 ESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFG--VRGCRVLMTARSQDVL-----SSKMDCQNNFLIGVLNES 306 (535)
Q Consensus 234 ~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~~~~~~--~~gs~ilvTtR~~~v~-----~~~~~~~~~~~l~~L~~~ 306 (535)
...+..... .++..++||.|.....|......+- ++. +|++|+-+.... ....+....+.+-||+..
T Consensus 84 ----~~~~~~~~~-~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 84 ----LRAYIELKE-REKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred ----HHHHHHhhc-cCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 111111111 2568999999999999887532222 223 788888776543 222345678999999999
Q ss_pred HHHHH
Q 009411 307 EARDL 311 (535)
Q Consensus 307 ea~~L 311 (535)
|-..+
T Consensus 158 Efl~~ 162 (398)
T COG1373 158 EFLKL 162 (398)
T ss_pred HHHhh
Confidence 88664
No 134
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.013 Score=57.73 Aligned_cols=171 Identities=11% Similarity=0.077 Sum_probs=94.2
Q ss_pred HHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCC-----cc
Q 009411 157 TLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLK-----FY 230 (535)
Q Consensus 157 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~-----~~ 230 (535)
.-+.+...+..+. ...+.++|+.|+||+++|..++...--.+.-+ ..++.....+.+...-..+ +.
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--------~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS--------EACGFCHSCELMQSGNHPDLHVIKPE 82 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--------CCCCCCHHHHHHHcCCCCCEEEEecC
Confidence 3455566665554 45788999999999999999987643211100 0000001111111000000 00
Q ss_pred ---CCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--c----ccccCCCCCCCCeEEEEeecC-chhhhcccCCcc
Q 009411 231 ---EESESGRARKLCERLK----KEKKILVILDDIWTNL--D----LENVGIPFGVRGCRVLMTARS-QDVLSSKMDCQN 296 (535)
Q Consensus 231 ---~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~----~~~~~~~~~~~gs~ilvTtR~-~~v~~~~~~~~~ 296 (535)
..-..+.++.+.+.+. .++.-++|+|+++... . +..+..| ..++.+|++|.+ ..+.....+...
T Consensus 83 ~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTI~SRCq 160 (319)
T PRK06090 83 KEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEP--APNCLFLLVTHNQKRLLPTIVSRCQ 160 (319)
T ss_pred cCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHhcce
Confidence 0011233344444432 2445689999997653 2 3333344 445666665555 444444445556
Q ss_pred eEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 009411 297 NFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (535)
Q Consensus 297 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 346 (535)
.+.+.+++.+++.+.+.... . + .+..+++.++|.|+....+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~-~--~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKGQG-I--T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eEeCCCCCHHHHHHHHHHcC-C--c------hHHHHHHHcCCCHHHHHHH
Confidence 89999999999999887642 1 1 1356789999999866443
No 135
>PRK08118 topology modulation protein; Reviewed
Probab=97.46 E-value=8.1e-05 Score=66.46 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc-cCcceEEE
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKAD-KLFDEVVY 205 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~w 205 (535)
+.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999987654 45677776
No 136
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0019 Score=69.38 Aligned_cols=175 Identities=20% Similarity=0.253 Sum_probs=108.1
Q ss_pred cccccccHH---HHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHH
Q 009411 148 YEAFESRMS---TLNDVINALKNP---------DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK 215 (535)
Q Consensus 148 ~~~~~gR~~---~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~ 215 (535)
+.++.|-++ |+.++++.|.++ -++=+.++|++|+|||-||++++-...+- |++++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH----
Confidence 455666654 566666777643 24668899999999999999999887753 4455442
Q ss_pred HHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc-----------------ccccCCC---CC-CC
Q 009411 216 KIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD-----------------LENVGIP---FG-VR 274 (535)
Q Consensus 216 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-----------------~~~~~~~---~~-~~ 274 (535)
+ ..+.+... ....+..+....+...++++.+|+++...- +.++..- +. ..
T Consensus 379 E----FvE~~~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 E----FVEMFVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred H----HHHHhccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 1 11111111 123455666666667889999998864311 2222111 11 33
Q ss_pred CeEEEEeecCchhhhcc----cCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHH
Q 009411 275 GCRVLMTARSQDVLSSK----MDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (535)
Q Consensus 275 gs~ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 343 (535)
+.-++-+|+..++.+.. ..-.+.+.++.-+.....++|.-++.......+...+.+ |+....|.+=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 34455566666554221 123467888888889999999988865444345555666 999998887553
No 137
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.43 E-value=0.0038 Score=60.24 Aligned_cols=55 Identities=24% Similarity=0.255 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHH
Q 009411 157 TLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQ 218 (535)
Q Consensus 157 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 218 (535)
.++++..++..+ .-|.|.|++|+|||+||+.+++.... ..+.++.....+..+++
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg~-----~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRDR-----PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEEeCCccCCHHHHh
Confidence 345555555543 35668999999999999999875431 23455555554444443
No 138
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.41 E-value=0.0023 Score=70.89 Aligned_cols=156 Identities=17% Similarity=0.233 Sum_probs=89.1
Q ss_pred ccccccHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHH
Q 009411 149 EAFESRMSTLNDVINALK------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 222 (535)
...+|.++..+.|+++|. .....++.++|++|+||||+++.++...... |- -++.+...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~~---~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--YV---RMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--EE---EEEcCCCCCHHHhccchh
Confidence 346788888999988876 2345689999999999999999999876532 31 233343333322221111
Q ss_pred HHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------ccc----------cCCCCCCCCeEEE
Q 009411 223 DKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD-------------LEN----------VGIPFGVRGCRVL 279 (535)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~----------~~~~~~~~gs~il 279 (535)
...+ .........+. ... ...-+++||.++.... ++. +..++.-.+.-+|
T Consensus 397 ~~~g-----~~~G~~~~~l~-~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIG-----SMPGKLIQKMA-KVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCC-----CCCcHHHHHHH-hcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 1111 01111111121 111 1334788999864311 110 1112223455566
Q ss_pred EeecCchhhhcccCCcceEecCCCCHHHHHHHHHHHh
Q 009411 280 MTARSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLV 316 (535)
Q Consensus 280 vTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (535)
.|+....+.....+....+.+.+++.++-.++.+++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 6776554433344555789999999999988887765
No 139
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.39 E-value=0.0058 Score=61.49 Aligned_cols=202 Identities=13% Similarity=0.161 Sum_probs=121.9
Q ss_pred cHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHH-HHHHHHhccccCcceEEEEEeCCC---CCHHHHHHHHHHHhCCCc
Q 009411 154 RMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLV-KEVARQAKADKLFDEVVYAEVSQR---PDVKKIQGQIADKLGLKF 229 (535)
Q Consensus 154 R~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~~~~~~~~~~~f~~~~wv~v~~~---~~~~~~~~~i~~~l~~~~ 229 (535)
|.+..++|-.||....-..|.|.||-|+||+.|+ .++.++.+. ++.+++.+- .+-..++..++.++|.-+
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999999887789999999999999999 666655332 556655321 233455555555554221
Q ss_pred -----------------------cC--CCchHHHHHHHHH----Hh-------------------------cCCcEEEEE
Q 009411 230 -----------------------YE--ESESGRARKLCER----LK-------------------------KEKKILVIL 255 (535)
Q Consensus 230 -----------------------~~--~~~~~~~~~l~~~----l~-------------------------~~~~~LlVl 255 (535)
.+ .+.+.....+++. |+ ..++-+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 11 1111111111111 00 012568999
Q ss_pred eCCCCcc-----------cccccCCCCCCCCeEEEEeecCchhhh---cc--cCCcceEecCCCCHHHHHHHHHHHhCCC
Q 009411 256 DDIWTNL-----------DLENVGIPFGVRGCRVLMTARSQDVLS---SK--MDCQNNFLIGVLNESEARDLFKKLVGDK 319 (535)
Q Consensus 256 Ddv~~~~-----------~~~~~~~~~~~~gs~ilvTtR~~~v~~---~~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 319 (535)
||.-... +|..... .++=.+||++|-+..... .. ....+.+.|...+++.|..+...+....
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv--~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLV--QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHH--hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 9985321 2332111 144567888887654431 12 2345789999999999999999988532
Q ss_pred CCC-------------------chhHHHHHHHHHHcCCChHHHHHHHHHhhc-CCH-HHHHHHHH
Q 009411 320 IEN-------------------NDLKSLAMNIVKACRGLPIAIVTIARALRN-KNT-FEWKSALR 363 (535)
Q Consensus 320 ~~~-------------------~~l~~~~~~i~~~~~GlPLai~~~~~~L~~-~~~-~~w~~~l~ 363 (535)
... .....-....+..+||=-.=+..+++.++. .++ .....+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 233 TEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 110 122333567888899999999999998883 333 33444443
No 140
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.38 E-value=0.0037 Score=69.56 Aligned_cols=171 Identities=15% Similarity=0.242 Sum_probs=95.0
Q ss_pred cccccccHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH
Q 009411 148 YEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 214 (535)
...+.|.+...+.|.+.+. -...+-+.++|++|+|||+||+.+++..... | +.+..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~---- 520 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRG---- 520 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEeh----
Confidence 3445676666665555432 1234568899999999999999999986532 2 22221
Q ss_pred HHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc---------c-----ccccCCC---C-CCCCe
Q 009411 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL---------D-----LENVGIP---F-GVRGC 276 (535)
Q Consensus 215 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---------~-----~~~~~~~---~-~~~gs 276 (535)
.+++.. . .. .....+..+........+++|++|+++... . ...+... . ...+.
T Consensus 521 ~~l~~~----~----vG-ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 521 PEILSK----W----VG-ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred HHHhhc----c----cC-cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 111111 0 11 112234555555555678999999985321 0 1111110 1 13455
Q ss_pred EEEEeecCchhhh-ccc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 009411 277 RVLMTARSQDVLS-SKM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (535)
Q Consensus 277 ~ilvTtR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP 340 (535)
.||.||....... ... .....+.++..+.++-.++|+.+.......++. -...+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 5666776554331 111 234578899999999999998766432221111 1456777787754
No 141
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.0058 Score=61.03 Aligned_cols=156 Identities=12% Similarity=0.053 Sum_probs=84.2
Q ss_pred ccc-cHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 009411 151 FES-RMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLK 228 (535)
Q Consensus 151 ~~g-R~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 228 (535)
++| .+..++.+...+..++. ....++|+.|+|||++|..+.+..-........ .++.....+.+...-..+
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~~~hpD 79 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDSGNHPD 79 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhcCCCCC
Confidence 445 66677777777776654 566899999999999999998775322101000 000001111110000000
Q ss_pred -----c-cCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCccc------ccccCCCCCCCCeEEEEeecCc-hhhhcc
Q 009411 229 -----F-YEESESGRARKLCERLK----KEKKILVILDDIWTNLD------LENVGIPFGVRGCRVLMTARSQ-DVLSSK 291 (535)
Q Consensus 229 -----~-~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~~------~~~~~~~~~~~gs~ilvTtR~~-~v~~~~ 291 (535)
. ......+.+..+.+.+. .+++-++|+|+++.... +..+..| ..++.+|++|.+. .+....
T Consensus 80 ~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP--p~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 80 VHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP--SGGTTAILLTENKHQILPTI 157 (329)
T ss_pred EEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC--CCCceEEEEeCChHhCcHHH
Confidence 0 00011223334444332 13456899999865432 2223233 4566667666554 333333
Q ss_pred cCCcceEecCCCCHHHHHHHHHHH
Q 009411 292 MDCQNNFLIGVLNESEARDLFKKL 315 (535)
Q Consensus 292 ~~~~~~~~l~~L~~~ea~~Lf~~~ 315 (535)
......+++.+++.++..+.+.+.
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHHHc
Confidence 345578999999999998888653
No 142
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.36 E-value=0.0038 Score=65.23 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=81.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 249 (535)
.+-|.++|++|+|||.+|+.+++..... | +-++.+ .+... ... ........+.+......
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~------~l~~~--------~vG-ese~~l~~~f~~A~~~~ 318 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVG------KLFGG--------IVG-ESESRMRQMIRIAEALS 318 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhH------Hhccc--------ccC-hHHHHHHHHHHHHHhcC
Confidence 4678899999999999999999886532 2 122211 11110 001 11223344444444457
Q ss_pred cEEEEEeCCCCccc--------------ccccCCCC--CCCCeEEEEeecCchhhhcc----cCCcceEecCCCCHHHHH
Q 009411 250 KILVILDDIWTNLD--------------LENVGIPF--GVRGCRVLMTARSQDVLSSK----MDCQNNFLIGVLNESEAR 309 (535)
Q Consensus 250 ~~LlVlDdv~~~~~--------------~~~~~~~~--~~~gs~ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~ea~ 309 (535)
+++|++|+++.... +..+...+ ...+.-||.||......... ..-...+.++.-+.++-.
T Consensus 319 P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~ 398 (489)
T CHL00195 319 PCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEERE 398 (489)
T ss_pred CcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHH
Confidence 89999999964210 00010001 12344466677655432111 122357888888999999
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 009411 310 DLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (535)
Q Consensus 310 ~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP 340 (535)
++|+.+.........-......+++.+.|.-
T Consensus 399 ~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 399 KIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 9999887532111000112446666666653
No 143
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.34 E-value=0.0022 Score=71.33 Aligned_cols=171 Identities=18% Similarity=0.271 Sum_probs=92.6
Q ss_pred cccccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH
Q 009411 148 YEAFESRMSTLNDVINALKN-------------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 214 (535)
+.++.|.+..++.+.+.+.- ...+.+.++|++|+|||+||+.+++..... | +.++.+
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~--~---i~i~~~----- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY--F---ISINGP----- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--E---EEEecH-----
Confidence 44577988888887776531 234668899999999999999999876421 2 222211
Q ss_pred HHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--------c-----ccccC---CCCCCCCeEE
Q 009411 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--------D-----LENVG---IPFGVRGCRV 278 (535)
Q Consensus 215 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--------~-----~~~~~---~~~~~~gs~i 278 (535)
++.... . .........+.+......+.+|+||+++... . ...+. ......+..+
T Consensus 247 -~i~~~~--------~-g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EIMSKY--------Y-GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HHhccc--------c-cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 111000 0 0112234444444444567899999985421 0 11111 1111233334
Q ss_pred EE-eecCchhhhccc----CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 009411 279 LM-TARSQDVLSSKM----DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (535)
Q Consensus 279 lv-TtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP 340 (535)
+| ||....-..... .-...+.+...+.++-.+++...........+ .....+++.+.|..
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~ 381 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFV 381 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCC
Confidence 44 454432111111 12346788888999988888866532211111 12456778887764
No 144
>PRK12377 putative replication protein; Provisional
Probab=97.31 E-value=0.00064 Score=64.49 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=48.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (535)
+...+.++|.+|+|||.||..+++....+ ...++++++ .+++..+-..... . .....+.+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~------~~l~~~l~~~~~~----~---~~~~~~l~~l~-- 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTV------PDVMSRLHESYDN----G---QSGEKFLQELC-- 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEH------HHHHHHHHHHHhc----c---chHHHHHHHhc--
Confidence 34678999999999999999999987643 233566654 3455555443321 0 11224455554
Q ss_pred CcEEEEEeCCC
Q 009411 249 KKILVILDDIW 259 (535)
Q Consensus 249 ~~~LlVlDdv~ 259 (535)
+--||||||+.
T Consensus 163 ~~dLLiIDDlg 173 (248)
T PRK12377 163 KVDLLVLDEIG 173 (248)
T ss_pred CCCEEEEcCCC
Confidence 45799999994
No 145
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0067 Score=60.48 Aligned_cols=172 Identities=12% Similarity=0.092 Sum_probs=95.9
Q ss_pred HHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCC-----cc
Q 009411 157 TLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLK-----FY 230 (535)
Q Consensus 157 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~-----~~ 230 (535)
.-+++...+..++ ...+.++|+.|+||+++|..++...--.+..+. ..++...-.+.+...-..+ +.
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGH-------KSCGHCRGCQLMQAGTHPDYYTLTPE 82 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHHcCCCCCEEEEecc
Confidence 3456666666554 467789999999999999998876532111000 0000001111111000000 00
Q ss_pred ---CCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--c----ccccCCCCCCCCeEEEEeecCc-hhhhcccCCcc
Q 009411 231 ---EESESGRARKLCERLK----KEKKILVILDDIWTNL--D----LENVGIPFGVRGCRVLMTARSQ-DVLSSKMDCQN 296 (535)
Q Consensus 231 ---~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~----~~~~~~~~~~~gs~ilvTtR~~-~v~~~~~~~~~ 296 (535)
..-..+.++.+.+.+. .+++-++|+|+++... . +..+..| ..++.+|++|.+. .+.....+...
T Consensus 83 ~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 83 KGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP--PENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHhccc
Confidence 0112334445555443 2566799999997543 2 3444444 4466666666554 44433334456
Q ss_pred eEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHH
Q 009411 297 NFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (535)
Q Consensus 297 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 343 (535)
.+.+.+++.++..+.+....+ .+ .+.+..+++.++|.|...
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~~---~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREVT---MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred cccCCCCCHHHHHHHHHHccC---CC---HHHHHHHHHHcCCCHHHH
Confidence 789999999999988876432 11 123668899999999643
No 146
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.29 E-value=0.0016 Score=59.71 Aligned_cols=88 Identities=26% Similarity=0.325 Sum_probs=57.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeC-CCCCHHHHHHHHHHHhCCCccCC----CchHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVS-QRPDVKKIQGQIADKLGLKFYEE----SESGRARKLCER 244 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~l~~~ 244 (535)
+++|.++|+.|+||||.+.+++.....+ -..+..++.. ......+-++..++.++.+.... +..+......+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3689999999999999999998887654 3446667764 33456778888899998774322 233334444444
Q ss_pred HhcCCcEEEEEeCCC
Q 009411 245 LKKEKKILVILDDIW 259 (535)
Q Consensus 245 l~~~~~~LlVlDdv~ 259 (535)
+..++.=++++|-.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 443333588888763
No 147
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.0021 Score=66.82 Aligned_cols=187 Identities=15% Similarity=0.177 Sum_probs=111.8
Q ss_pred CCcccccccHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
..+.+++|-+.....|...+..+. .......|+-|+||||+|+-++....-... .....++.....++|...
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINEG 85 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhcC
Confidence 445677999999999999888654 355678999999999999999876543210 111222223333333222
Q ss_pred hCCCc-----cCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCc--ccccccCCCCC--CCCeE-EEEeecCchhhhc
Q 009411 225 LGLKF-----YEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPFG--VRGCR-VLMTARSQDVLSS 290 (535)
Q Consensus 225 l~~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~~~~~~~--~~gs~-ilvTtR~~~v~~~ 290 (535)
-..+. ......+..+.+.+... .++.=+.|+|.|+-. ..|..+.-.+. ....+ |+.||-...+...
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 11110 11123345566666654 244458999999743 34444422221 23444 5556665666544
Q ss_pred ccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 009411 291 KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (535)
Q Consensus 291 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP 340 (535)
.......|.+..++.++-...+...+.......+ .+....|++..+|..
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAAEGSL 214 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHcCCCh
Confidence 5566678999999999999998888753332222 234556777777744
No 148
>PRK07261 topology modulation protein; Provisional
Probab=97.27 E-value=0.001 Score=59.71 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc-cCcceEEE
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKAD-KLFDEVVY 205 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~w 205 (535)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48899999999999999998775432 13455555
No 149
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.24 E-value=0.028 Score=55.86 Aligned_cols=99 Identities=17% Similarity=0.262 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (535)
..+.++|.+|+|||.||..+++....++ ..++|+++ .+++..+...-. ... .+ .....+.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~------~~l~~~l~~~~~---~~~--~~-~~~~~~~l~--~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTA------DELIEILREIRF---NND--KE-LEEVYDLLI--NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEH------HHHHHHHHHHHh---ccc--hh-HHHHHHHhc--cC
Confidence 7799999999999999999999876543 24666654 334444432211 111 11 111244443 23
Q ss_pred EEEEEeCCCCc--cccc--ccCCCCC---CCCeEEEEeecCc
Q 009411 251 ILVILDDIWTN--LDLE--NVGIPFG---VRGCRVLMTARSQ 285 (535)
Q Consensus 251 ~LlVlDdv~~~--~~~~--~~~~~~~---~~gs~ilvTtR~~ 285 (535)
=||||||+... ..|. .+...++ ..+..+||||...
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 58999999543 2222 1211111 3345588888754
No 150
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.23 E-value=0.0015 Score=57.79 Aligned_cols=40 Identities=28% Similarity=0.438 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
++.|+|++|+|||+++..++..... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 3679999999999999999887753 235577887765543
No 151
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.23 E-value=0.0033 Score=58.35 Aligned_cols=170 Identities=18% Similarity=0.288 Sum_probs=99.9
Q ss_pred ccccccHHHHHH---HHHHhcCC------CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHH
Q 009411 149 EAFESRMSTLND---VINALKNP------DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (535)
Q Consensus 149 ~~~~gR~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 219 (535)
.+++|.++...+ |++.|.++ .++-|..+|++|.|||.+|+.+++..++- | +.+. ..+++.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vk----at~liG 189 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVK----ATELIG 189 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEec----hHHHHH
Confidence 456777766543 55666643 46889999999999999999999987753 2 1111 111111
Q ss_pred HHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--------------cccccCCCC----CCCCeEEEEe
Q 009411 220 QIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--------------DLENVGIPF----GVRGCRVLMT 281 (535)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--------------~~~~~~~~~----~~~gs~ilvT 281 (535)
+..| +....+.++.++-..--+|++.+|.++... ....+..-+ .+.|...|..
T Consensus 190 ---ehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 190 ---EHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred ---HHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 1111 123345566666665678999999986321 112221111 1567666777
Q ss_pred ecCchhhhccc--CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 009411 282 ARSQDVLSSKM--DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (535)
Q Consensus 282 tR~~~v~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP 340 (535)
|.+...+.... .....|+...-+++|-.+++...+..-..+-+ .-.+.++++.+|+.
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~--~~~~~~~~~t~g~S 319 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD--ADLRYLAAKTKGMS 319 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc--cCHHHHHHHhCCCC
Confidence 76665542222 12346777777889999999888743221111 11456777777753
No 152
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.23 E-value=0.00077 Score=70.99 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=55.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (535)
.-+++.++|++|.||||||+-++++.. |. ++=|++|+.-+...+-..|...+....... ...
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Ys-VvEINASDeRt~~~v~~kI~~avq~~s~l~-------------ads 386 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----YS-VVEINASDERTAPMVKEKIENAVQNHSVLD-------------ADS 386 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----ce-EEEecccccccHHHHHHHHHHHHhhccccc-------------cCC
Confidence 457999999999999999999999876 32 677888888877777777766554332111 125
Q ss_pred CcEEEEEeCCCCc
Q 009411 249 KKILVILDDIWTN 261 (535)
Q Consensus 249 ~~~LlVlDdv~~~ 261 (535)
++..||+|.++..
T Consensus 387 rP~CLViDEIDGa 399 (877)
T KOG1969|consen 387 RPVCLVIDEIDGA 399 (877)
T ss_pred CcceEEEecccCC
Confidence 7888999998754
No 153
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.22 E-value=0.0029 Score=71.01 Aligned_cols=106 Identities=17% Similarity=0.214 Sum_probs=59.2
Q ss_pred ccccccHHHHHHHHHHhc-------CC--CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHH
Q 009411 149 EAFESRMSTLNDVINALK-------NP--DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~-------~~--~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 219 (535)
..++|.+..++.+.+.+. ++ ...++.++|++|+|||.||+.++...... ....+-++++.-.. -.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~----~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQE----AH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhh----hh
Confidence 356788888888888764 11 23578899999999999999998775321 11222233222110 01
Q ss_pred HHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 009411 220 QIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN 261 (535)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 261 (535)
.+..-+|.++.-.. ......+.+.++.....+|+||++...
T Consensus 640 ~~~~l~g~~~gyvg-~~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 640 TVSRLKGSPPGYVG-YGEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhccccCCCCCccc-ccccchHHHHHHhCCCcEEEEechhhc
Confidence 11122232221111 111123445555455679999999644
No 154
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.22 E-value=0.00054 Score=64.13 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEe
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV 208 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v 208 (535)
.++|+|..|+|||||+..+..... ..|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 567999999999999999998766 44887777654
No 155
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.026 Score=56.23 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=60.3
Q ss_pred HHHHHHHHHHh----cCCcEEEEEeCCCCcc--c----ccccCCCCCCCCeEEEEeecC-chhhhcccCCcceEecCCCC
Q 009411 236 GRARKLCERLK----KEKKILVILDDIWTNL--D----LENVGIPFGVRGCRVLMTARS-QDVLSSKMDCQNNFLIGVLN 304 (535)
Q Consensus 236 ~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~----~~~~~~~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~l~~L~ 304 (535)
+.++.+.+.+. .+++-++|+|+++... . +..+..| .+++.+|++|.+ ..+.....+....+.+.+++
T Consensus 115 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP--p~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~ 192 (342)
T PRK06964 115 EQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEP--PPGTVFLLVSARIDRLLPTILSRCRQFPMTVPA 192 (342)
T ss_pred HHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCC--CcCcEEEEEECChhhCcHHHHhcCEEEEecCCC
Confidence 44555555553 2455688999997653 2 3333333 445655555544 55444334445689999999
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHH
Q 009411 305 ESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (535)
Q Consensus 305 ~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 345 (535)
.++..+.+... +. . + ...++..++|.|+....
T Consensus 193 ~~~~~~~L~~~-~~--~-~-----~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 193 PEAAAAWLAAQ-GV--A-D-----ADALLAEAGGAPLAALA 224 (342)
T ss_pred HHHHHHHHHHc-CC--C-h-----HHHHHHHcCCCHHHHHH
Confidence 99999998775 21 1 1 22357788999975543
No 156
>PRK06921 hypothetical protein; Provisional
Probab=97.20 E-value=0.0011 Score=63.81 Aligned_cols=71 Identities=25% Similarity=0.324 Sum_probs=44.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (535)
....+.++|.+|+|||.||..+++....+. -..++|++. .+++..+...+ .......+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~~-- 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRMK-- 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHhc--
Confidence 456789999999999999999999865431 234566654 23333332221 11223334443
Q ss_pred CcEEEEEeCC
Q 009411 249 KKILVILDDI 258 (535)
Q Consensus 249 ~~~LlVlDdv 258 (535)
+--||||||+
T Consensus 177 ~~dlLiIDDl 186 (266)
T PRK06921 177 KVEVLFIDDL 186 (266)
T ss_pred CCCEEEEecc
Confidence 3469999999
No 157
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.20 E-value=0.02 Score=60.50 Aligned_cols=199 Identities=16% Similarity=0.133 Sum_probs=116.6
Q ss_pred ccccccHHHHHHHHHHhc----C-CCceEEEEEcCCCCcHHHHHHHHHHHhc------cccCcceEEEEEeCCCCCHHHH
Q 009411 149 EAFESRMSTLNDVINALK----N-PDVHMIGAYGMAGVGKTMLVKEVARQAK------ADKLFDEVVYAEVSQRPDVKKI 217 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~----~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~------~~~~f~~~~wv~v~~~~~~~~~ 217 (535)
..+.+|+.+..+|-..+. + ...+.+-|.|.+|+|||..+..|.+... .-..|+ .+.|+.-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 445689999988887775 3 3445888999999999999999998543 112343 334444455678999
Q ss_pred HHHHHHHhCCCccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCc-----ccccccCCCCCCCCeEEEEeecCch--
Q 009411 218 QGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTN-----LDLENVGIPFGVRGCRVLMTARSQD-- 286 (535)
Q Consensus 218 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~-----~~~~~~~~~~~~~gs~ilvTtR~~~-- 286 (535)
...|...+...... ....++.+..++. ..+.+++++|+++.. +.+-.+......++||++|.+=...
T Consensus 475 Y~~I~~~lsg~~~~--~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmd 552 (767)
T KOG1514|consen 475 YEKIWEALSGERVT--WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMD 552 (767)
T ss_pred HHHHHHhcccCccc--HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccccc
Confidence 99999998654332 2233444544543 245689999988543 2222221111256777666542221
Q ss_pred hhhc-------ccCCcceEecCCCCHHHHHHHHHHHhCC--CCCCchhHHHHHHHHHHcCCChHHHHHHHHHh
Q 009411 287 VLSS-------KMDCQNNFLIGVLNESEARDLFKKLVGD--KIENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (535)
Q Consensus 287 v~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L 350 (535)
.... ..-+...+...|-+.++-.++...+..+ .......+-++++++.-.|-.-.|+.+.-+..
T Consensus 553 lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 553 LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1110 1112346777777777777777766542 22233334445555555555555555544443
No 158
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.093 Score=53.03 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (535)
|--.++||||.|||++..++++... |+.. =+.++...+-.+ ++.+ +.. ...+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIy-dLeLt~v~~n~d-Lr~L--------------------L~~--t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIY-DLELTEVKLDSD-LRHL--------------------LLA--TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceE-EeeeccccCcHH-HHHH--------------------HHh--CCCC
Confidence 4567999999999999999999876 5432 122222211112 2222 222 1346
Q ss_pred EEEEEeCCCCcccc-----------c----cc-----CCCC-C---CC-CeE-EEEeecCchhh-hcccCC---cceEec
Q 009411 251 ILVILDDIWTNLDL-----------E----NV-----GIPF-G---VR-GCR-VLMTARSQDVL-SSKMDC---QNNFLI 300 (535)
Q Consensus 251 ~LlVlDdv~~~~~~-----------~----~~-----~~~~-~---~~-gs~-ilvTtR~~~v~-~~~~~~---~~~~~l 300 (535)
-+||+.|++..-++ . .+ .... + .. +-| |+.||...+-+ +..+.+ ...+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 78888888643111 1 01 0000 0 12 224 55577665433 112222 236788
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhh
Q 009411 301 GVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALR 351 (535)
Q Consensus 301 ~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~ 351 (535)
+-=+.+.-..|+.+..+...+++ ++.+|.+...|.-+.=..++..|-
T Consensus 368 gyCtf~~fK~La~nYL~~~~~h~----L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEEDHR----LFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCCCcc----hhHHHHHHhhcCccCHHHHHHHHh
Confidence 88889999999999887544333 455666655565544445555443
No 159
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.19 E-value=0.006 Score=54.13 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=70.4
Q ss_pred ccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCc------------------ceEEEEEeCCC--
Q 009411 153 SRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLF------------------DEVVYAEVSQR-- 211 (535)
Q Consensus 153 gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f------------------~~~~wv~v~~~-- 211 (535)
|-++..+.|.+.+..+.. ..+.++|+.|+||+++|..+++..-..... .-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 455667777777776665 467999999999999999998874332211 11333332221
Q ss_pred -CCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--cc----cccCCCCCCCCeEEEEeecC
Q 009411 212 -PDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DL----ENVGIPFGVRGCRVLMTARS 284 (535)
Q Consensus 212 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~----~~~~~~~~~~gs~ilvTtR~ 284 (535)
....++ +++...+..... .++.=++|+||++... .. ..+..| ..++.+|++|.+
T Consensus 81 ~i~i~~i-r~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEep--p~~~~fiL~t~~ 141 (162)
T PF13177_consen 81 SIKIDQI-REIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEP--PENTYFILITNN 141 (162)
T ss_dssp SBSHHHH-HHHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHST--TTTEEEEEEES-
T ss_pred hhhHHHH-HHHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCC--CCCEEEEEEECC
Confidence 122222 133333322111 1356799999997642 22 223333 468888888887
Q ss_pred chh-hhcccCCcceEecCCCC
Q 009411 285 QDV-LSSKMDCQNNFLIGVLN 304 (535)
Q Consensus 285 ~~v-~~~~~~~~~~~~l~~L~ 304 (535)
..- ..........+.+.+|+
T Consensus 142 ~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHTTSEEEEE----
T ss_pred hHHChHHHHhhceEEecCCCC
Confidence 653 23233344566666653
No 160
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.17 E-value=0.016 Score=59.73 Aligned_cols=87 Identities=28% Similarity=0.382 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC-CCCHHHHHHHHHHHhCCCccCC----CchHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYEE----SESGRARKLCE 243 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~l~~ 243 (535)
...+|.++|.+|+||||++..++.....++ + .+..++... .+...+.+..++..++.+.... .....+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 467899999999999999999998776433 2 344444432 2234556677777777654322 11222333334
Q ss_pred HHhcCCcEEEEEeCCC
Q 009411 244 RLKKEKKILVILDDIW 259 (535)
Q Consensus 244 ~l~~~~~~LlVlDdv~ 259 (535)
.+.. . -++|+|..-
T Consensus 172 ~~~~-~-DvVIIDTAG 185 (437)
T PRK00771 172 KFKK-A-DVIIVDTAG 185 (437)
T ss_pred Hhhc-C-CEEEEECCC
Confidence 4332 2 568888773
No 161
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.17 E-value=0.023 Score=58.09 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
...+|.++|++|+||||++..++.....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3679999999999999999999877654
No 162
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.16 E-value=0.0028 Score=60.15 Aligned_cols=89 Identities=24% Similarity=0.257 Sum_probs=54.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccC----cceEEEEEeCCCCCHHHHHHHHHHHhCCCccC----------CCc-
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKL----FDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE----------ESE- 234 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~----------~~~- 234 (535)
..++.|+|.+|+|||+|+.+++........ ...++|++....++..++ .++++..+..... .+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCHH
Confidence 478999999999999999999855332211 257899998776665433 3444444332111 011
Q ss_pred --hHHHHHHHHHHhcC-CcEEEEEeCCC
Q 009411 235 --SGRARKLCERLKKE-KKILVILDDIW 259 (535)
Q Consensus 235 --~~~~~~l~~~l~~~-~~~LlVlDdv~ 259 (535)
......+.+.+... +.-|||+|.+.
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 11223444444444 67789999884
No 163
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.14 E-value=0.0022 Score=59.65 Aligned_cols=86 Identities=21% Similarity=0.227 Sum_probs=51.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHh----CCCc---cCCCch---HHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL----GLKF---YEESES---GRAR 239 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l----~~~~---~~~~~~---~~~~ 239 (535)
..++.|+|++|+|||+++.+++...... -..++|++... ++...+.+ ++... .... +..+.. ....
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 4789999999999999999988775432 46789998875 55544333 33321 0000 001111 1233
Q ss_pred HHHHHHhcCCcEEEEEeCCC
Q 009411 240 KLCERLKKEKKILVILDDIW 259 (535)
Q Consensus 240 ~l~~~l~~~~~~LlVlDdv~ 259 (535)
.+...+...+.-+||+|.+.
T Consensus 88 ~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHhhcCccEEEEeCcH
Confidence 44444443456689999874
No 164
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.014 Score=59.59 Aligned_cols=157 Identities=18% Similarity=0.264 Sum_probs=86.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHH---
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERL--- 245 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l--- 245 (535)
+...+.+.|++|+|||+||..++.... |..+--++...-.. .++......+...+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~miG------------------~sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISPEDMIG------------------LSESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHHccC------------------ccHHHHHHHHHHHHHHh
Confidence 456677899999999999999987754 65444332211111 11111112222222
Q ss_pred hcCCcEEEEEeCCCCcccccccCCCC---------------CCCCeE--EEEeecCchhhhc--cc-CCcceEecCCCCH
Q 009411 246 KKEKKILVILDDIWTNLDLENVGIPF---------------GVRGCR--VLMTARSQDVLSS--KM-DCQNNFLIGVLNE 305 (535)
Q Consensus 246 ~~~~~~LlVlDdv~~~~~~~~~~~~~---------------~~~gs~--ilvTtR~~~v~~~--~~-~~~~~~~l~~L~~ 305 (535)
-...-..||+||+...-+|-.++-.+ +..|-| |+-||-...+... .+ .-...|.++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 12345789999998776665553221 133434 4446655555421 11 1235788988886
Q ss_pred -HHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhh
Q 009411 306 -SEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALR 351 (535)
Q Consensus 306 -~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~ 351 (535)
++..+.++..- ...+.+.+.++.+...+| +-..|+.+-.++.
T Consensus 675 ~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~--~~vgIKklL~lie 717 (744)
T KOG0741|consen 675 GEQLLEVLEELN--IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLIE 717 (744)
T ss_pred hHHHHHHHHHcc--CCCcchhHHHHHHHhccc--cchhHHHHHHHHH
Confidence 77777776542 122344455667777766 3334444444443
No 165
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.021 Score=59.31 Aligned_cols=128 Identities=19% Similarity=0.318 Sum_probs=82.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 249 (535)
..-|.++|++|.|||-||++++|..+.. |++|-.. +++..... ..+..+.+++++-+...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkYVG---------ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKYVG---------ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHHhh---------hHHHHHHHHHHHhhcCC
Confidence 4567899999999999999999998754 4555432 33333321 22345667777777778
Q ss_pred cEEEEEeCCCCcc-------------cccccCCCC----CCCCeEEEEeecCchhh-hcccC---CcceEecCCCCHHHH
Q 009411 250 KILVILDDIWTNL-------------DLENVGIPF----GVRGCRVLMTARSQDVL-SSKMD---CQNNFLIGVLNESEA 308 (535)
Q Consensus 250 ~~LlVlDdv~~~~-------------~~~~~~~~~----~~~gs~ilvTtR~~~v~-~~~~~---~~~~~~l~~L~~~ea 308 (535)
+|+|.||.++..- .+.++..-+ ...|.-||-.|..+++. ..... -...+-++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 9999999996431 122221111 14566677766665543 11122 224667777788999
Q ss_pred HHHHHHHhC
Q 009411 309 RDLFKKLVG 317 (535)
Q Consensus 309 ~~Lf~~~~~ 317 (535)
.++++....
T Consensus 685 ~~ILK~~tk 693 (802)
T KOG0733|consen 685 VAILKTITK 693 (802)
T ss_pred HHHHHHHhc
Confidence 999998875
No 166
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.09 E-value=0.0031 Score=61.48 Aligned_cols=88 Identities=23% Similarity=0.268 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC-CCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (535)
..+++.|+|++|+||||++..++.....+..-..+..++... .....+.+....+.++.+................+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~- 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR- 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-
Confidence 357999999999999999999988765431112355555433 122344455556666665544333334445555553
Q ss_pred CCcEEEEEeCC
Q 009411 248 EKKILVILDDI 258 (535)
Q Consensus 248 ~~~~LlVlDdv 258 (535)
..=+|++|..
T Consensus 272 -~~d~vliDt~ 281 (282)
T TIGR03499 272 -DKDLILIDTA 281 (282)
T ss_pred -CCCEEEEeCC
Confidence 2357788764
No 167
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.07 E-value=0.0056 Score=67.98 Aligned_cols=102 Identities=21% Similarity=0.250 Sum_probs=58.4
Q ss_pred cccccHHHHHHHHHHhc-------CC--CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHH
Q 009411 150 AFESRMSTLNDVINALK-------NP--DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~-------~~--~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 220 (535)
.++|.+..++.+...+. ++ ...++.++|++|+|||+||+.++.... ...+.++.++-.... .
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~----~ 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH----T 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----c
Confidence 45677777777777665 11 234678999999999999999998763 223455544321111 1
Q ss_pred HHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 009411 221 IADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN 261 (535)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 261 (535)
+...++.+.... ..+....+.+.+......+++||+++..
T Consensus 526 ~~~lig~~~gyv-g~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 VSRLIGAPPGYV-GFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHHhcCCCCCc-ccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 122223221111 1112233445554444579999999754
No 168
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.06 E-value=0.00051 Score=57.65 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+|.|.|++|+||||+|+.+++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998764
No 169
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.0032 Score=63.14 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=56.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC-CCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (535)
..++.++|+.|+||||++.+++.....+.....+..++... .....+-++...+.++.+................+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc--
Confidence 47899999999999999999998754321123455555432 335567777778888876554333333344444454
Q ss_pred CcEEEEEeCCC
Q 009411 249 KKILVILDDIW 259 (535)
Q Consensus 249 ~~~LlVlDdv~ 259 (535)
+.-++++|..-
T Consensus 215 ~~DlVLIDTaG 225 (374)
T PRK14722 215 NKHMVLIDTIG 225 (374)
T ss_pred CCCEEEEcCCC
Confidence 34677799884
No 170
>PRK04132 replication factor C small subunit; Provisional
Probab=97.06 E-value=0.015 Score=64.31 Aligned_cols=151 Identities=7% Similarity=0.022 Sum_probs=89.8
Q ss_pred CCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeC
Q 009411 178 MAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDD 257 (535)
Q Consensus 178 ~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDd 257 (535)
|.++||||+|..++++.-..+.-..++-+++++..+... .++++..+....+ +...+.-++|+|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~--------------~~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINV-IREKVKEFARTKP--------------IGGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCC--------------cCCCCCEEEEEEC
Confidence 789999999999999864322113467777777555543 3333332211000 0112457999999
Q ss_pred CCCcc--cccccCCCC--CCCCeEEEEeecCc-hhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHH
Q 009411 258 IWTNL--DLENVGIPF--GVRGCRVLMTARSQ-DVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNI 332 (535)
Q Consensus 258 v~~~~--~~~~~~~~~--~~~gs~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i 332 (535)
++... ....+.... +...+++|+++.+. .+..........+++.+++.++-...+...+......- -.+....|
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i-~~e~L~~I 717 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-TEEGLQAI 717 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHH
Confidence 98763 233221111 13456666665554 33222334456899999999999988887764221111 13467899
Q ss_pred HHHcCCChHHHH
Q 009411 333 VKACRGLPIAIV 344 (535)
Q Consensus 333 ~~~~~GlPLai~ 344 (535)
++.++|.+-.+.
T Consensus 718 a~~s~GDlR~AI 729 (846)
T PRK04132 718 LYIAEGDMRRAI 729 (846)
T ss_pred HHHcCCCHHHHH
Confidence 999999884443
No 171
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.05 E-value=0.0038 Score=59.73 Aligned_cols=80 Identities=23% Similarity=0.281 Sum_probs=52.4
Q ss_pred HHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHH
Q 009411 162 INALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKL 241 (535)
Q Consensus 162 ~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l 241 (535)
.+++. +..-+.++|.+|+|||.||.++.+... +..+ .+.+++ ..+++.++...... .....++
T Consensus 99 ~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~-------~~~~~~l 161 (254)
T COG1484 99 VEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDE-------GRLEEKL 161 (254)
T ss_pred HHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhc-------CchHHHH
Confidence 34444 556788999999999999999999987 3223 344553 45666666655532 1123344
Q ss_pred HHHHhcCCcEEEEEeCCCC
Q 009411 242 CERLKKEKKILVILDDIWT 260 (535)
Q Consensus 242 ~~~l~~~~~~LlVlDdv~~ 260 (535)
.+.+. +-=||||||+-.
T Consensus 162 ~~~l~--~~dlLIiDDlG~ 178 (254)
T COG1484 162 LRELK--KVDLLIIDDIGY 178 (254)
T ss_pred HHHhh--cCCEEEEecccC
Confidence 55454 345999999953
No 172
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.015 Score=63.24 Aligned_cols=104 Identities=19% Similarity=0.253 Sum_probs=62.4
Q ss_pred cccccHHHHHHHHHHhc-------C--CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHH
Q 009411 150 AFESRMSTLNDVINALK-------N--PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~-------~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 220 (535)
.++|.++.+..+.+.+. + ....+....|+.|+|||.||+.++...-... +..+-++.|+-- --..
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~----EkHs 565 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYM----EKHS 565 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHH----HHHH
Confidence 46788988888888775 2 2346777899999999999999998763221 233434333211 1112
Q ss_pred HHHHhCCCccCCCchHHHHHHHHHHhcCCcE-EEEEeCCCCc
Q 009411 221 IADKLGLKFYEESESGRARKLCERLKKEKKI-LVILDDIWTN 261 (535)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~-LlVlDdv~~~ 261 (535)
+.+-+|.++.-. .-+....+-+..+. ++| +|.||.+...
T Consensus 566 VSrLIGaPPGYV-GyeeGG~LTEaVRr-~PySViLlDEIEKA 605 (786)
T COG0542 566 VSRLIGAPPGYV-GYEEGGQLTEAVRR-KPYSVILLDEIEKA 605 (786)
T ss_pred HHHHhCCCCCCc-eeccccchhHhhhc-CCCeEEEechhhhc
Confidence 333344443211 11123455666664 555 8889999754
No 173
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.01 E-value=0.0014 Score=64.91 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=40.5
Q ss_pred cccccHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 150 AFESRMSTLNDVINALK------NPDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
.++|-++.++++++++. +...+++.++|++|+||||||..+++....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 68899999999999886 234588999999999999999999988754
No 174
>PRK10867 signal recognition particle protein; Provisional
Probab=97.00 E-value=0.048 Score=56.09 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
...+|.++|++|+||||++..++.....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4679999999999999999888876553
No 175
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.94 E-value=0.012 Score=64.26 Aligned_cols=146 Identities=23% Similarity=0.330 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (535)
+-|.|+|++|+|||++|+.++...... | +.++.+. +.... .+ ........+........+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~~------~~~~~---~g------~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSD------FVEMF---VG------VGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehHH------hHHhh---hc------ccHHHHHHHHHHHHhcCC
Confidence 458899999999999999998876532 2 2222211 11100 00 011123333343444568
Q ss_pred EEEEEeCCCCccc----------------ccccCC---CC-CCCCeEEEEeecCchhhhcc-c---CCcceEecCCCCHH
Q 009411 251 ILVILDDIWTNLD----------------LENVGI---PF-GVRGCRVLMTARSQDVLSSK-M---DCQNNFLIGVLNES 306 (535)
Q Consensus 251 ~LlVlDdv~~~~~----------------~~~~~~---~~-~~~gs~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~ 306 (535)
++|++|+++.... +..+.. .+ ...+.-+|.||......... . ...+.+.++..+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 9999999865310 111111 11 13455566677766543211 1 22467888888888
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC
Q 009411 307 EARDLFKKLVGDKIENNDLKSLAMNIVKACRG 338 (535)
Q Consensus 307 ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~G 338 (535)
+-.++++.+.......++. ....+++.+.|
T Consensus 326 ~R~~Il~~~~~~~~l~~~~--d~~~la~~t~G 355 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDI--DAAIIARGTPG 355 (644)
T ss_pred HHHHHHHHHhhcCCCCCcC--CHHHHHhhCCC
Confidence 8889988877532221111 12346666666
No 176
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0031 Score=64.24 Aligned_cols=93 Identities=24% Similarity=0.383 Sum_probs=60.8
Q ss_pred ccccccc---HHHHHHHHHHhcCCC---------ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHH
Q 009411 148 YEAFESR---MSTLNDVINALKNPD---------VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK 215 (535)
Q Consensus 148 ~~~~~gR---~~~~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~ 215 (535)
+.++.|- ..|+++|+++|.++. ++-|.++|++|.|||-||++++-...+- | |...+..|+
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFd-- 374 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFD-- 374 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchh--
Confidence 3444555 457888899988531 4678899999999999999999887764 2 222333322
Q ss_pred HHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCC
Q 009411 216 KIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWT 260 (535)
Q Consensus 216 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~ 260 (535)
+ ++-.. ....++.+...-+..-+|+|.+|.++.
T Consensus 375 E----m~VGv--------GArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 375 E----MFVGV--------GARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred h----hhhcc--------cHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 1 11111 123455566666667799999999864
No 177
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.92 E-value=0.0075 Score=57.13 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=53.7
Q ss_pred HHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCc
Q 009411 157 TLNDVINALKN--PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESE 234 (535)
Q Consensus 157 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~ 234 (535)
.+..+.++..+ .+...+.++|.+|+|||+||..+++.....+ ..+++++ ..+++..+-..... ..
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~it------~~~l~~~l~~~~~~--~~--- 150 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG--KSVLIIT------VADIMSAMKDTFSN--SE--- 150 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEE------HHHHHHHHHHHHhh--cc---
Confidence 44444444432 2335788999999999999999999876432 3455663 34555555443320 11
Q ss_pred hHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 009411 235 SGRARKLCERLKKEKKILVILDDIWTN 261 (535)
Q Consensus 235 ~~~~~~l~~~l~~~~~~LlVlDdv~~~ 261 (535)
.....+.+.+. +.=||||||+...
T Consensus 151 -~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 151 -TSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred -ccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 11234555554 3458999999543
No 178
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.91 E-value=0.035 Score=59.22 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=40.5
Q ss_pred CCcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+..++|.+..++.+...+......-+.|+|++|+|||++|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3455789999999998888776666677899999999999999998753
No 179
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.91 E-value=0.0045 Score=60.81 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=52.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC------CCchHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE------ESESGRARKLCE 243 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 243 (535)
.+++-|.|++|+||||||.+++...... -..++|++....++.. .++.++.+.+. ....+....+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~ 127 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAET 127 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4789999999999999999988765432 3457788776655542 35555543221 122223333333
Q ss_pred HHhcCCcEEEEEeCCC
Q 009411 244 RLKKEKKILVILDDIW 259 (535)
Q Consensus 244 ~l~~~~~~LlVlDdv~ 259 (535)
.+..+..-++|+|.+-
T Consensus 128 li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 128 LVRSGAVDIIVVDSVA 143 (321)
T ss_pred HhhccCCcEEEEcchh
Confidence 3344566799999985
No 180
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.90 E-value=0.059 Score=55.43 Aligned_cols=59 Identities=20% Similarity=0.252 Sum_probs=35.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLK 228 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~ 228 (535)
.+.++.++|.+|+||||++..++.....+..+ .+.-++... .+...+-+.......+.+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp 157 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVP 157 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCc
Confidence 45799999999999999999988775421112 233343322 122333444455555544
No 181
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.90 E-value=0.058 Score=53.80 Aligned_cols=43 Identities=28% Similarity=0.447 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 155 MSTLNDVINALKN---PDVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 155 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
+...+.|.+.+.+ ....+|+|.|.=|+|||++.+.+.+.....
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3445566666663 467899999999999999999999887654
No 182
>PRK06696 uridine kinase; Validated
Probab=96.89 E-value=0.0016 Score=61.27 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=35.9
Q ss_pred ccHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 153 SRMSTLNDVINALK---NPDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 153 gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
.|.+.+++|.+.+. .++..+|+|.|.+|+||||||+.+......
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46667777777764 456789999999999999999999988753
No 183
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.058 Score=56.80 Aligned_cols=131 Identities=15% Similarity=0.256 Sum_probs=74.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhc
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (535)
...+-|.++|+||.|||++|+.+++..... | +++... +++.... ...+..+..+++.-++
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp----EL~sk~v---------GeSEr~ir~iF~kAR~ 525 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP----ELFSKYV---------GESERAIREVFRKARQ 525 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH----HHHHHhc---------CchHHHHHHHHHHHhh
Confidence 456788899999999999999999987643 3 333321 2222211 1122334455555544
Q ss_pred CCcEEEEEeCCCCccc-------------ccccCCCC-C---CCCeEEEEee-cCchhhhcccC---CcceEecCCCCHH
Q 009411 248 EKKILVILDDIWTNLD-------------LENVGIPF-G---VRGCRVLMTA-RSQDVLSSKMD---CQNNFLIGVLNES 306 (535)
Q Consensus 248 ~~~~LlVlDdv~~~~~-------------~~~~~~~~-~---~~gs~ilvTt-R~~~v~~~~~~---~~~~~~l~~L~~~ 306 (535)
-.+++|.||.++.... +..+..-. + ..+.-||-.| |...+-...+. ....+.+++-+.+
T Consensus 526 ~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~ 605 (693)
T KOG0730|consen 526 VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE 605 (693)
T ss_pred cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence 5678888888864311 11111111 1 2233333333 33322222233 3457788888888
Q ss_pred HHHHHHHHHhCC
Q 009411 307 EARDLFKKLVGD 318 (535)
Q Consensus 307 ea~~Lf~~~~~~ 318 (535)
.-.++|+.++..
T Consensus 606 aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 606 ARLEILKQCAKK 617 (693)
T ss_pred HHHHHHHHHHhc
Confidence 889999998853
No 184
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.84 E-value=0.016 Score=56.03 Aligned_cols=167 Identities=20% Similarity=0.203 Sum_probs=99.9
Q ss_pred cccccccHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCc-ceEEEEEeCCCCCH-HHHHHHH
Q 009411 148 YEAFESRMSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLF-DEVVYAEVSQRPDV-KKIQGQI 221 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~wv~v~~~~~~-~~~~~~i 221 (535)
...++|-.++-.++-.++. .++..-+.|+|+.|.|||+|......+.. .| ...+-|.+....-. .-+++.|
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q---~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ---ENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH---hcCCeEEEEEECccchhhHHHHHHH
Confidence 3467788888877777775 34456677999999999999988877721 23 23344445443322 3355566
Q ss_pred HHHhCCCcc-----CCCchHHHHHHHHHHhc-----CCcEEEEEeCCCCccc-------ccccC--CCCCCCCeEEEEee
Q 009411 222 ADKLGLKFY-----EESESGRARKLCERLKK-----EKKILVILDDIWTNLD-------LENVG--IPFGVRGCRVLMTA 282 (535)
Q Consensus 222 ~~~l~~~~~-----~~~~~~~~~~l~~~l~~-----~~~~LlVlDdv~~~~~-------~~~~~--~~~~~~gs~ilvTt 282 (535)
.+++..... ..+-.+....+...|.. +.+++.|+|.++--.. ...+. ..-..+-|-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 655533221 12334456777777764 2357888888753211 11111 11124567788999
Q ss_pred cCchhh------hcccCCcceEecCCCCHHHHHHHHHHHhC
Q 009411 283 RSQDVL------SSKMDCQNNFLIGVLNESEARDLFKKLVG 317 (535)
Q Consensus 283 R~~~v~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (535)
|-...- ........++-++.++-++...++++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 876431 11122223566677889999999998873
No 185
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.83 E-value=0.014 Score=58.19 Aligned_cols=137 Identities=12% Similarity=0.107 Sum_probs=77.8
Q ss_pred ccccHHHHHHHHHHhc-CCCceE-EEEEcCCCCcHHHHHHHHHHHhcccc-------------------CcceEEEEEeC
Q 009411 151 FESRMSTLNDVINALK-NPDVHM-IGAYGMAGVGKTMLVKEVARQAKADK-------------------LFDEVVYAEVS 209 (535)
Q Consensus 151 ~~gR~~~~~~l~~~L~-~~~~~v-i~I~G~gGiGKTtLa~~~~~~~~~~~-------------------~f~~~~wv~v~ 209 (535)
++|-+....++..+.. ..+.+. +.++|++|+||||+|..+++...... ....+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 3455666777777776 334444 99999999999999999998865322 12234445544
Q ss_pred CCCC---HHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc--ccccC--CCCCCCCeEEEEee
Q 009411 210 QRPD---VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD--LENVG--IPFGVRGCRVLMTA 282 (535)
Q Consensus 210 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--~~~~~--~~~~~~gs~ilvTt 282 (535)
.... ..+..+++.+....... .++.-++++|+++.... -..+. ..-+...+.+|++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 4433 33444444443332211 14567999999976532 22211 11125567777777
Q ss_pred cCc-hhhhcccCCcceEecCCC
Q 009411 283 RSQ-DVLSSKMDCQNNFLIGVL 303 (535)
Q Consensus 283 R~~-~v~~~~~~~~~~~~l~~L 303 (535)
... .+..........+++.+.
T Consensus 147 n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred CChhhccchhhhcceeeecCCc
Confidence 643 332222233456666663
No 186
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.83 E-value=0.0055 Score=60.26 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=52.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC------CCchHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE------ESESGRARKLCE 243 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 243 (535)
.+++-|+|++|+||||||.+++...... -..++|++....++.. .++.++.+.+. .+..+....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 4788899999999999999988765432 3457898877666542 34445443221 122223333333
Q ss_pred HHhcCCcEEEEEeCCC
Q 009411 244 RLKKEKKILVILDDIW 259 (535)
Q Consensus 244 ~l~~~~~~LlVlDdv~ 259 (535)
.+..+..-++|+|.+-
T Consensus 128 li~s~~~~lIVIDSva 143 (325)
T cd00983 128 LVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHhccCCCEEEEcchH
Confidence 3344566799999974
No 187
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0065 Score=60.30 Aligned_cols=84 Identities=26% Similarity=0.298 Sum_probs=60.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCC--CchHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEE--SESGRARKLCERLKK 247 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 247 (535)
..+|.|-|-+|+|||||..+++.+...++ .++||+-.+... -.+--++.|+.+.++. -.+...+.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~~---QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESLQ---QIKLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCHH---HHHHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 47899999999999999999999987543 688887655432 2233456677554332 223346677777777
Q ss_pred CCcEEEEEeCCC
Q 009411 248 EKKILVILDDIW 259 (535)
Q Consensus 248 ~~~~LlVlDdv~ 259 (535)
.++-|+|+|.+.
T Consensus 167 ~~p~lvVIDSIQ 178 (456)
T COG1066 167 EKPDLVVIDSIQ 178 (456)
T ss_pred cCCCEEEEeccc
Confidence 789999999984
No 188
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.002 Score=69.68 Aligned_cols=157 Identities=16% Similarity=0.211 Sum_probs=91.8
Q ss_pred CcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcc-----eEEEEEeCCCCCHHHHHHHH
Q 009411 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFD-----EVVYAEVSQRPDVKKIQGQI 221 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~-----~~~wv~v~~~~~~~~~~~~i 221 (535)
...+++||++|+.++++.|....-.--.++|.+|+|||+++.-++...-..+-.. .++-.. +
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD-------------~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD-------------L 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec-------------H
Confidence 3567899999999999999843222234789999999999999988754332111 111111 1
Q ss_pred HHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc--------ccc--cCCCCCCCC-eE-EEEeecCchhh-
Q 009411 222 ADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD--------LEN--VGIPFGVRG-CR-VLMTARSQDVL- 288 (535)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--------~~~--~~~~~~~~g-s~-ilvTtR~~~v~- 288 (535)
..-+........-++....+.+.+...++..|++|.++..-. .+. +..|.-..| -+ |=.||=++.--
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~ 314 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKY 314 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHH
Confidence 111111122223345666777777655589999999875311 111 222222333 34 44455433210
Q ss_pred ----hcccCCcceEecCCCCHHHHHHHHHHHh
Q 009411 289 ----SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (535)
Q Consensus 289 ----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (535)
.........+.++.-+.+++..+++...
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 0112345688899999999999987554
No 189
>PRK09354 recA recombinase A; Provisional
Probab=96.78 E-value=0.007 Score=60.04 Aligned_cols=83 Identities=17% Similarity=0.230 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC------CCchHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE------ESESGRARKLCE 243 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 243 (535)
.+++-|+|++|+||||||.+++...... -..++|++....++. ..++.++.+.+. ....+....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4788999999999999999988765433 355789988777664 245555544221 122223333333
Q ss_pred HHhcCCcEEEEEeCCC
Q 009411 244 RLKKEKKILVILDDIW 259 (535)
Q Consensus 244 ~l~~~~~~LlVlDdv~ 259 (535)
.+..+..-+||+|.+-
T Consensus 133 li~s~~~~lIVIDSva 148 (349)
T PRK09354 133 LVRSGAVDLIVVDSVA 148 (349)
T ss_pred HhhcCCCCEEEEeChh
Confidence 3344567799999985
No 190
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.78 E-value=0.16 Score=51.29 Aligned_cols=60 Identities=25% Similarity=0.396 Sum_probs=42.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEe-CCCCCHHHHHHHHHHHhCCCcc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV-SQRPDVKKIQGQIADKLGLKFY 230 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v-~~~~~~~~~~~~i~~~l~~~~~ 230 (535)
.+.+|-.+|.-|.||||.+-.+++..+.++ +. +.-|++ ...+...+-++.+..+.+.+.-
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~-~k-vllVaaD~~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKG-KK-VLLVAADTYRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcC-Cc-eEEEecccCChHHHHHHHHHHHHcCCcee
Confidence 467899999999999999999998877532 22 222322 2344566778888888877643
No 191
>PRK04296 thymidine kinase; Provisional
Probab=96.77 E-value=0.0017 Score=59.34 Aligned_cols=111 Identities=17% Similarity=0.136 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC---CCchHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE---ESESGRARKLCERLKK 247 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 247 (535)
.++.|+|+.|.||||++..++...... -..++.+. ..++.......++..++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 477899999999999999998876543 22333332 1112122233455555543322 111222222222 33
Q ss_pred CCcEEEEEeCCCCc--ccccccCCCCCCCCeEEEEeecCchh
Q 009411 248 EKKILVILDDIWTN--LDLENVGIPFGVRGCRVLMTARSQDV 287 (535)
Q Consensus 248 ~~~~LlVlDdv~~~--~~~~~~~~~~~~~gs~ilvTtR~~~v 287 (535)
++.-+||+|.+.-. +++..+...+...|..|++|.+....
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 34458999999542 22333322223568889999998643
No 192
>PRK08181 transposase; Validated
Probab=96.77 E-value=0.009 Score=57.48 Aligned_cols=78 Identities=19% Similarity=0.175 Sum_probs=48.6
Q ss_pred HHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHH
Q 009411 163 NALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLC 242 (535)
Q Consensus 163 ~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 242 (535)
+|+.. ..-+.++|++|+|||.||..+++....+ ...++|++ ..+++..+..... . .......
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~~----~----~~~~~~l 162 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVARR----E----LQLESAI 162 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHHh----C----CcHHHHH
Confidence 45543 3458999999999999999999876543 23355654 3455555543321 1 1122344
Q ss_pred HHHhcCCcEEEEEeCCCC
Q 009411 243 ERLKKEKKILVILDDIWT 260 (535)
Q Consensus 243 ~~l~~~~~~LlVlDdv~~ 260 (535)
+.+. +.-||||||+..
T Consensus 163 ~~l~--~~dLLIIDDlg~ 178 (269)
T PRK08181 163 AKLD--KFDLLILDDLAY 178 (269)
T ss_pred HHHh--cCCEEEEecccc
Confidence 4554 346999999953
No 193
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.76 E-value=0.0046 Score=55.75 Aligned_cols=73 Identities=26% Similarity=0.374 Sum_probs=44.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 249 (535)
..-+.++|.+|+|||.||..+.+....++ + .+.|++ ..+++..+-. ..... ....+.+.+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~-~v~f~~------~~~L~~~l~~----~~~~~----~~~~~~~~l~--~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKG-Y-SVLFIT------ASDLLDELKQ----SRSDG----SYEELLKRLK--R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEE------HHHHHHHHHC----CHCCT----THCHHHHHHH--T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCC-c-ceeEee------cCceeccccc----ccccc----chhhhcCccc--c
Confidence 45689999999999999999998765432 2 355664 3455555432 11111 1234455665 3
Q ss_pred cEEEEEeCCCC
Q 009411 250 KILVILDDIWT 260 (535)
Q Consensus 250 ~~LlVlDdv~~ 260 (535)
-=||||||+-.
T Consensus 109 ~dlLilDDlG~ 119 (178)
T PF01695_consen 109 VDLLILDDLGY 119 (178)
T ss_dssp SSCEEEETCTS
T ss_pred ccEecccccce
Confidence 46888999954
No 194
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.73 E-value=0.0045 Score=55.82 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEE
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYA 206 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv 206 (535)
...+|.+.|++|+||||+|+.+++..... +..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 44689999999999999999999887643 5555555
No 195
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.71 E-value=0.013 Score=56.14 Aligned_cols=91 Identities=23% Similarity=0.341 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC-HHHHHHHHHHHhCCC-------ccCCCch-----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD-VKKIQGQIADKLGLK-------FYEESES----- 235 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~----- 235 (535)
..+-++|.|.+|+|||||++.+++....+ +-+.++++-+++... ..++..++...-... ..+.+..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34678999999999999999999987643 224567777877664 455555554421111 1111111
Q ss_pred -HHHHHHHHHHh-c-CCcEEEEEeCCCC
Q 009411 236 -GRARKLCERLK-K-EKKILVILDDIWT 260 (535)
Q Consensus 236 -~~~~~l~~~l~-~-~~~~LlVlDdv~~ 260 (535)
...-.+.+++. + ++.+|+++||+..
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 12334555553 2 7899999999854
No 196
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.71 E-value=0.011 Score=56.76 Aligned_cols=89 Identities=27% Similarity=0.316 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccc----cCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCC----------Cch
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD----KLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEE----------SES 235 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~----~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~----------~~~ 235 (535)
..+.=|+|++|+|||+|+.+++-..... +.=..++|++-...++..++. +|++..+...... +..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 3688899999999999999887553321 122469999988888876654 5666654332110 111
Q ss_pred ---HHHHHHHHHHhcCCcEEEEEeCCC
Q 009411 236 ---GRARKLCERLKKEKKILVILDDIW 259 (535)
Q Consensus 236 ---~~~~~l~~~l~~~~~~LlVlDdv~ 259 (535)
..+..+...+...+--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 112233333334455688898873
No 197
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.016 Score=58.00 Aligned_cols=89 Identities=18% Similarity=0.251 Sum_probs=51.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC-CCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-PDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (535)
+.++|+++|++|+||||++..++.....++ + .+..++.... ....+-+....+.++.+................+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G-k-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-K-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC-C-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 357999999999999999999988765332 2 2444544321 223344455555666554433333333344444432
Q ss_pred C-CcEEEEEeCCC
Q 009411 248 E-KKILVILDDIW 259 (535)
Q Consensus 248 ~-~~~LlVlDdv~ 259 (535)
. +.=++++|-.-
T Consensus 318 ~~~~DvVLIDTaG 330 (436)
T PRK11889 318 EARVDYILIDTAG 330 (436)
T ss_pred ccCCCEEEEeCcc
Confidence 1 23477888764
No 198
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.71 E-value=0.014 Score=56.93 Aligned_cols=54 Identities=22% Similarity=0.394 Sum_probs=40.4
Q ss_pred ccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHH-HHhccccCcceEE
Q 009411 151 FESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVA-RQAKADKLFDEVV 204 (535)
Q Consensus 151 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~-~~~~~~~~f~~~~ 204 (535)
+-+|..+-.--++.|.++.+..|.+.|.+|.|||.||.+.. .+.-+++.|..++
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Kii 280 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKII 280 (436)
T ss_pred cCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEE
Confidence 44566777777888999999999999999999999987754 3333345565443
No 199
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.68 E-value=0.0051 Score=69.43 Aligned_cols=106 Identities=22% Similarity=0.275 Sum_probs=60.6
Q ss_pred ccccccHHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHH
Q 009411 149 EAFESRMSTLNDVINALKN-------P--DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 219 (535)
..++|.+..++.+...+.. + ...++.++|++|+|||++|+.+....... -...+.++.+.-....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~---- 638 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKH---- 638 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccc----
Confidence 3578888888888887752 1 13568899999999999999999875422 1233444444322211
Q ss_pred HHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 009411 220 QIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN 261 (535)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 261 (535)
.+...+|.++ .-...+....+...+......+|+||++...
T Consensus 639 ~~~~l~g~~~-g~~g~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 639 SVARLIGAPP-GYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred hHHHhcCCCC-CccCcccccHHHHHHHcCCCcEEEEeccccC
Confidence 1111223221 1111111223444444334469999999754
No 200
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.68 E-value=0.0074 Score=56.81 Aligned_cols=54 Identities=26% Similarity=0.322 Sum_probs=37.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccc----CcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADK----LFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
..++.|.|++|+|||+|+.+++......+ .-..++|++....++...+ .++...
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~ 76 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVR 76 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH-HHHHHH
Confidence 47899999999999999999987643221 1156789988776665443 344443
No 201
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.014 Score=60.76 Aligned_cols=88 Identities=23% Similarity=0.281 Sum_probs=51.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC-CCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (535)
..+|+|+|++|+||||++..++.....+.....+..++... .....+.+......++...............++.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc--
Confidence 57999999999999999999887654332223455555422 222334444444555544433333334445555553
Q ss_pred CcEEEEEeCCC
Q 009411 249 KKILVILDDIW 259 (535)
Q Consensus 249 ~~~LlVlDdv~ 259 (535)
..-+|++|..-
T Consensus 428 ~~DLVLIDTaG 438 (559)
T PRK12727 428 DYKLVLIDTAG 438 (559)
T ss_pred cCCEEEecCCC
Confidence 34588888874
No 202
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.66 E-value=0.015 Score=54.94 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=25.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
.+..+++|.|+.|+|||||++.+......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 55789999999999999999999987664
No 203
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.65 E-value=0.013 Score=57.57 Aligned_cols=90 Identities=19% Similarity=0.316 Sum_probs=56.5
Q ss_pred ccHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 009411 153 SRMSTLNDVINALKN----PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLK 228 (535)
Q Consensus 153 gR~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 228 (535)
+|........+++.+ ...+-+.|+|..|+|||.||..+++....++ +. +.++++ .+++.++....+..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g-~~-v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKG-VS-STLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC-CC-EEEEEH------HHHHHHHHHHHhcC
Confidence 455555555555542 2346788999999999999999999976432 32 455543 35556665544211
Q ss_pred ccCCCchHHHHHHHHHHhcCCcEEEEEeCCCC
Q 009411 229 FYEESESGRARKLCERLKKEKKILVILDDIWT 260 (535)
Q Consensus 229 ~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~ 260 (535)
......+.+. +-=||||||+..
T Consensus 207 --------~~~~~l~~l~--~~dlLiIDDiG~ 228 (306)
T PRK08939 207 --------SVKEKIDAVK--EAPVLMLDDIGA 228 (306)
T ss_pred --------cHHHHHHHhc--CCCEEEEecCCC
Confidence 1234445554 456999999953
No 204
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.63 E-value=0.0026 Score=54.73 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADK 198 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~ 198 (535)
--|.|.|++|+||||+++.+.+..+.++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 4688999999999999999999887654
No 205
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.63 E-value=0.0096 Score=58.73 Aligned_cols=89 Identities=20% Similarity=0.266 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccc----cCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCC----------Cch
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD----KLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEE----------SES 235 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~----~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~----------~~~ 235 (535)
..++-|+|++|+|||+|+.+++-..... +.=..++|++....++..++. ++++.++.+.... +..
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHH
Confidence 4688899999999999999877432211 112468999998888877654 4567666543210 111
Q ss_pred ---HHHHHHHHHHhcCCcEEEEEeCCC
Q 009411 236 ---GRARKLCERLKKEKKILVILDDIW 259 (535)
Q Consensus 236 ---~~~~~l~~~l~~~~~~LlVlDdv~ 259 (535)
+.+..+...+...+--|||+|.+-
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 122233333443445688888874
No 206
>PTZ00494 tuzin-like protein; Provisional
Probab=96.61 E-value=0.99 Score=45.93 Aligned_cols=162 Identities=12% Similarity=0.129 Sum_probs=99.3
Q ss_pred CCcccccccHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALK---NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 222 (535)
.....++.|+.+-..+...|. ...++++++.|.-|.||++|.+........- .++|.+... ++-++.+.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~p-----aV~VDVRg~---EDtLrsVV 439 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVA-----LVHVDVGGT---EDTLRSVV 439 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCC-----eEEEEecCC---cchHHHHH
Confidence 445678888877666555554 4568999999999999999999998877643 567888765 45678899
Q ss_pred HHhCCCccCC--CchHHHHHHHHHH---hcCCcEEEEEeCCCCcccccc-----cCCCCCCCCeEEEEeecCchhh--hc
Q 009411 223 DKLGLKFYEE--SESGRARKLCERL---KKEKKILVILDDIWTNLDLEN-----VGIPFGVRGCRVLMTARSQDVL--SS 290 (535)
Q Consensus 223 ~~l~~~~~~~--~~~~~~~~l~~~l---~~~~~~LlVlDdv~~~~~~~~-----~~~~~~~~gs~ilvTtR~~~v~--~~ 290 (535)
+.|+.+..+. +..+.+......- .+++.-+||+-=- +...+.. +.+.....-|+|++--=.+.+- ..
T Consensus 440 KALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLR-EGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 440 RALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLR-EGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNV 518 (664)
T ss_pred HHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEec-cCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhc
Confidence 9998875542 2222222222211 2245556665321 1122111 1122234456777644333221 11
Q ss_pred ccCCcceEecCCCCHHHHHHHHHHHh
Q 009411 291 KMDCQNNFLIGVLNESEARDLFKKLV 316 (535)
Q Consensus 291 ~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (535)
..+....|.+++++.++|.+.-.+..
T Consensus 519 ~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 519 SSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred cCccceeEecCCcCHHHHHHHHhccc
Confidence 23445689999999999998877654
No 207
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.60 E-value=0.014 Score=58.17 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=41.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc---c-cCcceEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKA---D-KLFDEVVYAEVSQRPDVKKIQGQIADKLGLK 228 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~---~-~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 228 (535)
..++-|+|.+|+|||+|+.+++-.... . +.-..++|++....++..++. ++++.++.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 467889999999999999998643221 1 112468999999888877654 456666654
No 208
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.58 E-value=0.011 Score=55.68 Aligned_cols=44 Identities=23% Similarity=0.356 Sum_probs=33.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKK 216 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~ 216 (535)
..++.|+|.+|+|||++|.+++...... -..++|++.. ..+...
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPER 66 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHH
Confidence 4789999999999999999998776432 4568899877 444433
No 209
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.006 Score=58.43 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
.++|.++|++|.|||+|++.++++..++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4899999999999999999999997764
No 210
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.57 E-value=0.0087 Score=67.36 Aligned_cols=106 Identities=21% Similarity=0.261 Sum_probs=59.3
Q ss_pred ccccccHHHHHHHHHHhc-------CCC--ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHH
Q 009411 149 EAFESRMSTLNDVINALK-------NPD--VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~-------~~~--~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 219 (535)
..++|.+..++.+...+. +.+ ...+.++|+.|+|||+||+.+++..-.. -...+.++.+.-.....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~--- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHT--- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhcccccc---
Confidence 456788888888877764 122 3456789999999999999999875321 12234444443221111
Q ss_pred HHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 009411 220 QIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN 261 (535)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 261 (535)
+...+|.+. .-...+....+.+.+......+++||+++..
T Consensus 584 -~~~l~g~~~-gyvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 584 -VSKLIGSPP-GYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred -HHHhcCCCC-cccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 111223221 1111111224455555434469999999754
No 211
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.55 E-value=0.0064 Score=55.14 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+|.|+|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999988764
No 212
>PHA02244 ATPase-like protein
Probab=96.55 E-value=0.04 Score=54.86 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 159 NDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 159 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+..++..+ . -|.|+|++|+|||+||+.+++...
T Consensus 110 ~ri~r~l~~~-~-PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 110 ADIAKIVNAN-I-PVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHHhcC-C-CEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444433 2 467899999999999999998754
No 213
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.049 Score=51.74 Aligned_cols=169 Identities=21% Similarity=0.238 Sum_probs=90.3
Q ss_pred ccccccHHHHHHHHHHhc----------C--CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHH
Q 009411 149 EAFESRMSTLNDVINALK----------N--PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKK 216 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~ 216 (535)
..+.|-+...+.|.+... . ...+-|.++|++|.||+.||++|+...... |++||.. +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-------FFSvSSS----D 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-------FFSVSSS----D 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-------eEEeehH----H
Confidence 344555555555555432 1 235789999999999999999999876521 3344432 2
Q ss_pred HHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCc---------ccccccC-----CC----CCCCCeEE
Q 009411 217 IQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN---------LDLENVG-----IP----FGVRGCRV 278 (535)
Q Consensus 217 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~---------~~~~~~~-----~~----~~~~gs~i 278 (535)
+..+. +| ..+.....+.+--+..++.+|.+|.++.. +.-+.+. .. .+..|.-|
T Consensus 202 LvSKW---mG------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 202 LVSKW---MG------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred HHHHH---hc------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 22222 11 12334556666666789999999999642 1111111 11 11445556
Q ss_pred EEeecCchhhhccc--CCcceEecCCCCHHHH-HHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 009411 279 LMTARSQDVLSSKM--DCQNNFLIGVLNESEA-RDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (535)
Q Consensus 279 lvTtR~~~v~~~~~--~~~~~~~l~~L~~~ea-~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~Gl 339 (535)
|-.|..+-++.... .....|-+ ||.+..| ..+|+-+.|..... -.+.-.+++.++..|.
T Consensus 273 LgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~-LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHV-LTEQDFKELARKTEGY 334 (439)
T ss_pred EecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCccc-cchhhHHHHHhhcCCC
Confidence 66676665442111 11123333 3444444 45566666643221 1123355667777664
No 214
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.54 E-value=0.0032 Score=65.76 Aligned_cols=48 Identities=15% Similarity=0.338 Sum_probs=41.5
Q ss_pred cccccccHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 148 YEAFESRMSTLNDVINALK------NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+.+++|-++.+++|++.|. +...+++.++|++|+||||||+.+++-..
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 3467899999999999883 55668999999999999999999998765
No 215
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.53 E-value=0.067 Score=50.41 Aligned_cols=204 Identities=12% Similarity=0.163 Sum_probs=111.3
Q ss_pred cccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhcccc----CcceEEEEEeCCC----------C---
Q 009411 150 AFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADK----LFDEVVYAEVSQR----------P--- 212 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~wv~v~~~----------~--- 212 (535)
.+.++++....+.........+-..++|++|.||-|.+..+.++.-.-+ .-+..-|.+-+.. +
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 4556666666666665566788999999999999999988887743211 1233344433322 1
Q ss_pred --------CHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcE-EEEEeCCCCc--ccccccCCCCC--CCCeEEE
Q 009411 213 --------DVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKI-LVILDDIWTN--LDLENVGIPFG--VRGCRVL 279 (535)
Q Consensus 213 --------~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~-LlVlDdv~~~--~~~~~~~~~~~--~~gs~il 279 (535)
.-.-+..++++.++...+-.. ...++| ++|+-.++.. +.-..++.... .+.+|+|
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qie~------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQIET------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcchhh------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 112344444444432211100 112344 4555555432 11111111000 4466766
Q ss_pred EeecCch-hhhcccCCcceEecCCCCHHHHHHHHHHHhCCCC-CCchhHHHHHHHHHHcCCChHHHHHHHHHhh--c---
Q 009411 280 MTARSQD-VLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKI-ENNDLKSLAMNIVKACRGLPIAIVTIARALR--N--- 352 (535)
Q Consensus 280 vTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~--~--- 352 (535)
+.-.+.. +........-.+++...+++|....+++.+.... .-| .+++.+|+++++|+---.-.+.-.++ +
T Consensus 162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~ 239 (351)
T KOG2035|consen 162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPF 239 (351)
T ss_pred EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccc
Confidence 6433321 1111122234788999999999999998885322 222 56899999999997543333333333 1
Q ss_pred ----C--CHHHHHHHHHHhcC
Q 009411 353 ----K--NTFEWKSALRELTR 367 (535)
Q Consensus 353 ----~--~~~~w~~~l~~l~~ 367 (535)
. +.-+|+-++..+..
T Consensus 240 ~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 240 TANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred cccCCCCCCccHHHHHHHHHH
Confidence 1 45579888877543
No 216
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.019 Score=57.27 Aligned_cols=90 Identities=17% Similarity=0.223 Sum_probs=57.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC-CCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (535)
+.+++.++|+.|+||||++..++.....++ ..+.+++... .....+-++...+.++.+.....+........+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 458999999999999999999987764332 3466666643 2334566777777777654433333334444444431
Q ss_pred -CCcEEEEEeCCCC
Q 009411 248 -EKKILVILDDIWT 260 (535)
Q Consensus 248 -~~~~LlVlDdv~~ 260 (535)
+..=+|++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 2346888888743
No 217
>PRK06547 hypothetical protein; Provisional
Probab=96.52 E-value=0.0042 Score=55.63 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 160 DVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 160 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+...+......+|+|.|++|+||||+|+.+.+...
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344455567788999999999999999999998754
No 218
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.52 E-value=0.008 Score=59.41 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=26.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
..+..++|+|++|.|||.+|+.+++.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 346789999999999999999999998753
No 219
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.50 E-value=0.012 Score=59.43 Aligned_cols=85 Identities=25% Similarity=0.280 Sum_probs=54.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCC--CchHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEE--SESGRARKLCERLKK 247 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 247 (535)
..++.|.|.+|+|||||+.+++...... -..++|++..+. ...+ ..-+..++...+.. ........+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4689999999999999999998776533 246778876543 2332 23345565443221 111234556666655
Q ss_pred CCcEEEEEeCCC
Q 009411 248 EKKILVILDDIW 259 (535)
Q Consensus 248 ~~~~LlVlDdv~ 259 (535)
.+.-+||+|.+.
T Consensus 157 ~~~~lVVIDSIq 168 (372)
T cd01121 157 LKPDLVIIDSIQ 168 (372)
T ss_pred cCCcEEEEcchH
Confidence 567899999984
No 220
>PRK07667 uridine kinase; Provisional
Probab=96.50 E-value=0.004 Score=57.09 Aligned_cols=38 Identities=29% Similarity=0.535 Sum_probs=29.6
Q ss_pred HHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 159 NDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 159 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
+.|.+.+. .+...+|+|.|.+|+||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44555554 344579999999999999999999987653
No 221
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.49 E-value=0.043 Score=54.50 Aligned_cols=150 Identities=13% Similarity=0.122 Sum_probs=78.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccc---------------------CcceEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADK---------------------LFDEVVYAEVSQRPDVKKIQGQIADKLGLK 228 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~---------------------~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 228 (535)
...+.++|+.|+|||++|..++...--.. |.| ..++.-...... -+ .
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD-~~~~~p~~~~~~----------~g-~ 88 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPD-FYEITPLSDEPE----------NG-R 88 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCC-EEEEeccccccc----------cc-c
Confidence 45688999999999999999988743110 111 111111000000 00 0
Q ss_pred ccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCccc------ccccCCCCCCCCeEEEEeecCch-hhhcccCCcce
Q 009411 229 FYEESESGRARKLCERLK----KEKKILVILDDIWTNLD------LENVGIPFGVRGCRVLMTARSQD-VLSSKMDCQNN 297 (535)
Q Consensus 229 ~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~~------~~~~~~~~~~~gs~ilvTtR~~~-v~~~~~~~~~~ 297 (535)
....-..+.++.+.+.+. .+++-++|+|++...+. +..+..| ..++.+|++|.+.. +..........
T Consensus 89 ~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep--~~~~~~Ilvth~~~~ll~ti~SRc~~ 166 (325)
T PRK08699 89 KLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP--PPQVVFLLVSHAADKVLPTIKSRCRK 166 (325)
T ss_pred cCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhC--cCCCEEEEEeCChHhChHHHHHHhhh
Confidence 000012334444544443 13344556688765431 2223223 23455666776654 33333344568
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHH
Q 009411 298 FLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIA 342 (535)
Q Consensus 298 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLa 342 (535)
+.+.+++.+++.+.+... +. ... . ..+..++|.|+.
T Consensus 167 ~~~~~~~~~~~~~~L~~~-~~---~~~--~---~~l~~~~g~p~~ 202 (325)
T PRK08699 167 MVLPAPSHEEALAYLRER-GV---AEP--E---ERLAFHSGAPLF 202 (325)
T ss_pred hcCCCCCHHHHHHHHHhc-CC---CcH--H---HHHHHhCCChhh
Confidence 999999999999888664 21 111 1 123568899964
No 222
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.013 Score=59.40 Aligned_cols=85 Identities=21% Similarity=0.262 Sum_probs=47.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC-CCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (535)
..++.++|++|+||||++..++........+ .+..++... .......+...++.++.+.... .....+...+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~---~~~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV---KDIKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeeh---HHHHHHHHHHHhC
Confidence 4689999999999999999998755322112 233333221 2233445555566666543222 1233444444432
Q ss_pred CcEEEEEeCC
Q 009411 249 KKILVILDDI 258 (535)
Q Consensus 249 ~~~LlVlDdv 258 (535)
..-++++|-.
T Consensus 299 ~~D~VLIDTa 308 (432)
T PRK12724 299 GSELILIDTA 308 (432)
T ss_pred CCCEEEEeCC
Confidence 3346888854
No 223
>PRK06526 transposase; Provisional
Probab=96.48 E-value=0.0065 Score=58.06 Aligned_cols=73 Identities=22% Similarity=0.256 Sum_probs=43.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 249 (535)
..-+.|+|++|+|||+||..+.+....++ + .+.|+ +..+++..+..... . .........+. +
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g-~-~v~f~------t~~~l~~~l~~~~~----~----~~~~~~l~~l~--~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG-H-RVLFA------TAAQWVARLAAAHH----A----GRLQAELVKLG--R 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC-C-chhhh------hHHHHHHHHHHHHh----c----CcHHHHHHHhc--c
Confidence 45689999999999999999988765432 2 23332 33445555433211 1 11122233333 3
Q ss_pred cEEEEEeCCCC
Q 009411 250 KILVILDDIWT 260 (535)
Q Consensus 250 ~~LlVlDdv~~ 260 (535)
.-|||+||+..
T Consensus 160 ~dlLIIDD~g~ 170 (254)
T PRK06526 160 YPLLIVDEVGY 170 (254)
T ss_pred CCEEEEccccc
Confidence 46999999964
No 224
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.47 E-value=0.032 Score=55.89 Aligned_cols=100 Identities=19% Similarity=0.185 Sum_probs=61.0
Q ss_pred HHHHHHHhcCC----CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC-CCCHHHHHHHHHHHhCCCccCC
Q 009411 158 LNDVINALKNP----DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYEE 232 (535)
Q Consensus 158 ~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~ 232 (535)
+..+..++.++ +.++|.++|+.|+||||-...++....-...=..+..|+... .....+-++..++-++.+....
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv 266 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVV 266 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEe
Confidence 44444555443 479999999999999965555554443111123455665532 3356677778888888887765
Q ss_pred CchHHHHHHHHHHhcCCcEEEEEeCCC
Q 009411 233 SESGRARKLCERLKKEKKILVILDDIW 259 (535)
Q Consensus 233 ~~~~~~~~l~~~l~~~~~~LlVlDdv~ 259 (535)
.+..........+.. .=+|.+|-+-
T Consensus 267 ~~~~el~~ai~~l~~--~d~ILVDTaG 291 (407)
T COG1419 267 YSPKELAEAIEALRD--CDVILVDTAG 291 (407)
T ss_pred cCHHHHHHHHHHhhc--CCEEEEeCCC
Confidence 555555555555542 2466677764
No 225
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.47 E-value=0.018 Score=57.05 Aligned_cols=57 Identities=25% Similarity=0.369 Sum_probs=41.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccc----CcceEEEEEeCCCCCHHHHHHHHHHHhCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADK----LFDEVVYAEVSQRPDVKKIQGQIADKLGL 227 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 227 (535)
..++-|+|++|+|||+++.+++....... .=..++||+....++..++ .++++.++.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl-~~~~~~~gl 155 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERI-MQMAEARGL 155 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 57889999999999999999987643210 1136899999888877654 345555554
No 226
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.46 E-value=0.028 Score=48.55 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=73.1
Q ss_pred chhH-HHHHHHHHHHHhhhhhhccccccchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 009411 2 VEIA-VAIAVKVAECLVHPIIHPFAYCYNYKSNLEKLKNEVQKLRGAKESVQQKIDDAKRSGEDIEQRVENWLITADEIL 80 (535)
Q Consensus 2 ae~~-~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~L~~~l~~i~~~l~~a~~~~~~~~~~v~~wl~~l~~~~ 80 (535)
+|++ .+++|.+++.+...+.........+.. -++.|...+++|...+++.+..+...+..-+.-++++.+..
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~-------~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L 75 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKS-------ILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELL 75 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHH
Confidence 4555 456777777777776666655444444 45555555555566666666544444444467788999999
Q ss_pred HHHHHHhccccccccccCCChhHHhHHHHHHHHHHHHHHHH
Q 009411 81 DAAARIIEGTEDTTNRLCPNLNTRYQVSKKAAREVKAAAEL 121 (535)
Q Consensus 81 ~d~ed~ld~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i 121 (535)
.++++++..+..-. ++++...++.+++|+++.+.+...
T Consensus 76 ~~g~~LV~k~sk~~---r~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 76 EKGKELVEKCSKVR---RWNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHHHHHHHHhcccc---HHHHHhhHhHHHHHHHHHHHHHHH
Confidence 99999998875422 345666777888888888887765
No 227
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.45 E-value=0.022 Score=53.75 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=33.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLG 226 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 226 (535)
..++.|.|.+|+||||||.+++.....++ ..++|++... +..++++.+ .+++
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~--~~~~~~~~~-~~~g 75 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQL--TTTEFIKQM-MSLG 75 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCC--CHHHHHHHH-HHhC
Confidence 45899999999999999877766543222 3456766333 445555555 3444
No 228
>PRK14974 cell division protein FtsY; Provisional
Probab=96.45 E-value=0.035 Score=55.14 Aligned_cols=89 Identities=24% Similarity=0.242 Sum_probs=50.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC--CHHHHHHHHHHHhCCCccCC----CchHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP--DVKKIQGQIADKLGLKFYEE----SESGRARKLC 242 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~----~~~~~~~~l~ 242 (535)
+..+|.++|++|+||||++..++......+ + .++.+.. +.+ ...+-+......++.+.... +....+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g-~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNG-F-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-C-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999999999887765432 3 2333432 222 23345566777777653321 1112222222
Q ss_pred HHHhcCCcEEEEEeCCCC
Q 009411 243 ERLKKEKKILVILDDIWT 260 (535)
Q Consensus 243 ~~l~~~~~~LlVlDdv~~ 260 (535)
+.......-++++|..-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 222222223899998854
No 229
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.43 E-value=0.026 Score=53.61 Aligned_cols=47 Identities=11% Similarity=0.207 Sum_probs=33.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 220 (535)
..++.|.|.+|+|||++|.++......+ -..++|++.... ..++.+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeCC--HHHHHHH
Confidence 4789999999999999999977654322 345788887653 3444444
No 230
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.13 Score=47.57 Aligned_cols=128 Identities=20% Similarity=0.272 Sum_probs=72.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (535)
+++-+.++|++|.|||-||+.++++-. ..|+.+|.. ++..+.+.. .......++--.+..
T Consensus 180 QPKGvlLygppgtGktLlaraVahht~-------c~firvsgs----elvqk~ige---------gsrmvrelfvmareh 239 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGS----ELVQKYIGE---------GSRMVRELFVMAREH 239 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechH----HHHHHHhhh---------hHHHHHHHHHHHHhc
Confidence 567788999999999999999987654 446666653 233322111 011233333333345
Q ss_pred CcEEEEEeCCCCcc------------c--------ccccCCCCCCCCeEEEEeecCchhhh-ccc---CCcceEecCCCC
Q 009411 249 KKILVILDDIWTNL------------D--------LENVGIPFGVRGCRVLMTARSQDVLS-SKM---DCQNNFLIGVLN 304 (535)
Q Consensus 249 ~~~LlVlDdv~~~~------------~--------~~~~~~~~~~~gs~ilvTtR~~~v~~-~~~---~~~~~~~l~~L~ 304 (535)
-+.+|..|.+++.. . +.++...-..++.+||..|..-++.. ... .-.+.++.++-+
T Consensus 240 apsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~ 319 (404)
T KOG0728|consen 240 APSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPN 319 (404)
T ss_pred CCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCC
Confidence 67888888876421 0 11111111156678888776655441 112 223467777777
Q ss_pred HHHHHHHHHHHh
Q 009411 305 ESEARDLFKKLV 316 (535)
Q Consensus 305 ~~ea~~Lf~~~~ 316 (535)
.+.-.++++-+.
T Consensus 320 e~ar~~ilkihs 331 (404)
T KOG0728|consen 320 EEARLDILKIHS 331 (404)
T ss_pred HHHHHHHHHHhh
Confidence 776677776444
No 231
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.05 Score=50.79 Aligned_cols=92 Identities=18% Similarity=0.302 Sum_probs=59.3
Q ss_pred cccccccHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH
Q 009411 148 YEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 214 (535)
+..+-|-.+.+++|.+... -+..+-|.++|++|.|||-+|++++|+-.. .|+.|-.
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda-------cfirvig---- 244 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA-------CFIRVIG---- 244 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc-------eEEeehh----
Confidence 4566688888888777543 134567889999999999999999987652 2333221
Q ss_pred HHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCC
Q 009411 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIW 259 (535)
Q Consensus 215 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~ 259 (535)
.++.++... ........+.+-.+.+|-|+|.+|.++
T Consensus 245 selvqkyvg---------egarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 245 SELVQKYVG---------EGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HHHHHHHhh---------hhHHHHHHHHHHhcccceEEEEeeccc
Confidence 122222211 112344556666666788999999885
No 232
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.37 E-value=0.02 Score=52.80 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=54.4
Q ss_pred cccccccHHHHHHHHH----HhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHH
Q 009411 148 YEAFESRMSTLNDVIN----ALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~----~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 223 (535)
...++|-+...+.|++ .+.....--|.++|.-|+|||+|++++.+....+ .-. -|.|...
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr--LVEV~k~------------ 122 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR--LVEVDKE------------ 122 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe--EEEEcHH------------
Confidence 3456676666665553 3334455678899999999999999999988754 211 2222221
Q ss_pred HhCCCccCCCchHHHHHHHHHHhc-CCcEEEEEeCCCC
Q 009411 224 KLGLKFYEESESGRARKLCERLKK-EKKILVILDDIWT 260 (535)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~ 260 (535)
+......+.+.|+. ..+|+|..||+.-
T Consensus 123 ----------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSF 150 (287)
T COG2607 123 ----------DLATLPDLVELLRARPEKFILFCDDLSF 150 (287)
T ss_pred ----------HHhhHHHHHHHHhcCCceEEEEecCCCC
Confidence 11122334444432 5789999999953
No 233
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.019 Score=58.20 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccc--CcceEEEEEeCC-CCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADK--LFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYEESESGRARKLCERL 245 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~--~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 245 (535)
..++|.++|+.|+||||.+..++....... .-..+..+++.. .....+-++..++.++.+................+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 357999999999999999999987754321 122455555543 22334446667777777654433333333333333
Q ss_pred hcCCcEEEEEeCCC
Q 009411 246 KKEKKILVILDDIW 259 (535)
Q Consensus 246 ~~~~~~LlVlDdv~ 259 (535)
.+.-++++|.+.
T Consensus 253 --~~~DlVLIDTaG 264 (388)
T PRK12723 253 --KDFDLVLVDTIG 264 (388)
T ss_pred --CCCCEEEEcCCC
Confidence 234688899884
No 234
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.36 E-value=0.0031 Score=53.31 Aligned_cols=22 Identities=45% Similarity=0.745 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 009411 173 IGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~ 194 (535)
|+|.|.+|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 235
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.36 E-value=0.02 Score=53.55 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+|+|.|.+|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 236
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.34 E-value=0.0082 Score=51.70 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=32.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHH
Q 009411 173 IGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 220 (535)
|.|+|++|+|||+||+.+++.... ...-+.++...+..+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccceee
Confidence 679999999999999999988732 2445677777777765544
No 237
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.33 E-value=0.018 Score=51.73 Aligned_cols=54 Identities=24% Similarity=0.379 Sum_probs=32.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC-CCCHHHHHHHHHHHhCC
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGL 227 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~ 227 (535)
++.++|++|+||||++..++......+ ..++.++... .....+.+...+...+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g--~~v~~i~~D~~~~~~~~~l~~~~~~~~~ 56 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG--KKVLLVAADTYRPAAIEQLRVLGEQVGV 56 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEEcCCCChHHHHHHHHhcccCCe
Confidence 678999999999999999988765431 1234444332 12333444444444443
No 238
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.32 E-value=0.015 Score=53.90 Aligned_cols=85 Identities=32% Similarity=0.531 Sum_probs=53.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC-CHHHHHHHHHHHhCCC-------ccCCCchH------
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESESG------ 236 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------ 236 (535)
.-++|.|.+|+|||+|+..+.+... -+.++++.+++.. ...++.+++...-... ..+.+...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 6788999999999999999998875 3445888888764 4555555553321111 11111111
Q ss_pred HHHHHHHHHh-cCCcEEEEEeCCC
Q 009411 237 RARKLCERLK-KEKKILVILDDIW 259 (535)
Q Consensus 237 ~~~~l~~~l~-~~~~~LlVlDdv~ 259 (535)
..-.+.+++. .++++|+++||+.
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHH
T ss_pred cchhhhHHHhhcCCceeehhhhhH
Confidence 1223334443 4789999999984
No 239
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.32 E-value=0.016 Score=59.79 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=50.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc-cccCcceEEEEEeCCC-CCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK-ADKLFDEVVYAEVSQR-PDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~-~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (535)
.+++.++|++|+||||++..++.... ..+ -..+..++.... ....+.+....+.++.+................+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-
Confidence 36899999999999999999887654 221 234566665331 11233445555666655433322223333333333
Q ss_pred CCcEEEEEeCC
Q 009411 248 EKKILVILDDI 258 (535)
Q Consensus 248 ~~~~LlVlDdv 258 (535)
..=+|++|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3468888976
No 240
>PHA00729 NTP-binding motif containing protein
Probab=96.31 E-value=0.0059 Score=56.60 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=28.9
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 160 DVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 160 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+++.+...+...|.|.|.+|+||||||..+.+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555556667899999999999999999998753
No 241
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.31 E-value=0.019 Score=53.65 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=31.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP 212 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~ 212 (535)
..++.|.|.+|+||||++.+++.....+ -..++|++....+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~ 59 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLS 59 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCC
Confidence 4789999999999999999998776432 2457788765444
No 242
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.31 E-value=0.0059 Score=52.65 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=36.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCcc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY 230 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 230 (535)
+|.|.|++|+||||+|+.++++..-. .+ +.-.+++++++..|.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCHH
Confidence 68999999999999999999988743 11 234688899988887643
No 243
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.31 E-value=0.021 Score=56.44 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=40.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc---cc-CcceEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKA---DK-LFDEVVYAEVSQRPDVKKIQGQIADKLGLK 228 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~---~~-~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 228 (535)
..++.|+|.+|+|||+|+..++..... .+ .-..++|++....++..+ +.++++.++..
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~ 157 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLN 157 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCC
Confidence 578999999999999999998763221 11 113578999887777665 44555655543
No 244
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.029 Score=59.87 Aligned_cols=95 Identities=17% Similarity=0.332 Sum_probs=66.1
Q ss_pred CcccccccHHHHHHHHHHhc---------CCC---ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH
Q 009411 147 GYEAFESRMSTLNDVINALK---------NPD---VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~---------~~~---~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 214 (535)
...++-|-++.+.+|.+.+. ..+ ..-|.++|++|.|||-||++|+....-. |++|-.+
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGP--- 739 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGP--- 739 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-------EEeecCH---
Confidence 34566788888888887664 222 4568899999999999999999876532 4555432
Q ss_pred HHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 009411 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN 261 (535)
Q Consensus 215 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 261 (535)
+++..... ..++..+.+.++-+.-++|+|.||.+++.
T Consensus 740 -ELLNMYVG---------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 -ELLNMYVG---------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred -HHHHHHhc---------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 33333221 22445677888877789999999999753
No 245
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.29 E-value=0.026 Score=54.41 Aligned_cols=124 Identities=17% Similarity=0.141 Sum_probs=66.9
Q ss_pred HHHHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCC-Cc-------
Q 009411 159 NDVINALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGL-KF------- 229 (535)
Q Consensus 159 ~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~-~~------- 229 (535)
+.++..|. +....-++|.|+.|.|||||.+.++..... ..+.+++.-.. ....+-..++...... +.
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~~~~r~ 174 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKK-VGIVDERSEIAGCVNGVPQHDVGIRT 174 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEE-eecchhHHHHHHHhcccccccccccc
Confidence 34444444 344578999999999999999999976542 23333332100 0000111233222211 11
Q ss_pred cCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcccccccCCCCCCCCeEEEEeecCchh
Q 009411 230 YEESESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDV 287 (535)
Q Consensus 230 ~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTtR~~~v 287 (535)
+..+.......+...+....+-++++|.+-..+.+..+.... ..|..+|+||....+
T Consensus 175 ~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~-~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 175 DVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL-HAGVSIIATAHGRDV 231 (270)
T ss_pred cccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH-hCCCEEEEEechhHH
Confidence 111111123344444544568899999987666555442222 357789999987655
No 246
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.04 Score=58.50 Aligned_cols=130 Identities=20% Similarity=0.279 Sum_probs=75.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (535)
..+.+.++|++|.|||.||+++++..+.. |- .+... +++.+.+ ......+..+...-...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--fi-----~v~~~----~l~sk~v---------Gesek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--FI-----SVKGS----ELLSKWV---------GESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--EE-----EeeCH----HHhcccc---------chHHHHHHHHHHHHHcC
Confidence 45688899999999999999999965532 42 22211 1111110 01122344444444456
Q ss_pred CcEEEEEeCCCCcccc-------------cccCCCC----CCCCeEEEEeecCchhhhcc-c---CCcceEecCCCCHHH
Q 009411 249 KKILVILDDIWTNLDL-------------ENVGIPF----GVRGCRVLMTARSQDVLSSK-M---DCQNNFLIGVLNESE 307 (535)
Q Consensus 249 ~~~LlVlDdv~~~~~~-------------~~~~~~~----~~~gs~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e 307 (535)
.++.|.+|.++....+ ..+.... ...+..||-||......... . .-...+.+++-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 7899999999643211 1111111 13344455566555432111 1 224588899999999
Q ss_pred HHHHHHHHhCC
Q 009411 308 ARDLFKKLVGD 318 (535)
Q Consensus 308 a~~Lf~~~~~~ 318 (535)
..+.|..+...
T Consensus 415 r~~i~~~~~~~ 425 (494)
T COG0464 415 RLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHhcc
Confidence 99999998863
No 247
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.28 E-value=0.028 Score=55.86 Aligned_cols=57 Identities=26% Similarity=0.399 Sum_probs=41.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccC----cceEEEEEeCCCCCHHHHHHHHHHHhCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKL----FDEVVYAEVSQRPDVKKIQGQIADKLGL 227 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 227 (535)
..++-|+|++|+|||+++.+++........ =..++|++....++..++. ++++.++.
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 578889999999999999999866432111 1468999998887776544 44555554
No 248
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.27 E-value=0.026 Score=54.91 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+.+|+|.|..|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999988765543
No 249
>PRK09183 transposase/IS protein; Provisional
Probab=96.27 E-value=0.02 Score=54.98 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
...+.|+|++|+|||+||..+++....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 356779999999999999999877543
No 250
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.27 E-value=0.022 Score=56.77 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=41.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc---cc-CcceEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKA---DK-LFDEVVYAEVSQRPDVKKIQGQIADKLGLK 228 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~---~~-~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 228 (535)
..++-|+|.+|+|||+|+..++-.... .+ .-..++|++....++..++ .++++.++..
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 478889999999999999988754321 11 1136899999988887665 5666766654
No 251
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.25 E-value=0.019 Score=52.08 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR 211 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~ 211 (535)
++.|.|++|+|||+|+.++....... =..++|++....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCC
Confidence 36799999999999999987765422 234778876543
No 252
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.25 E-value=0.035 Score=53.11 Aligned_cols=92 Identities=23% Similarity=0.246 Sum_probs=59.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc--cccCcceEEEEEeCCCC-CHHHHHHHHHHHhCCCc-------cCCCch---
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK--ADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLKF-------YEESES--- 235 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~--~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~--- 235 (535)
.-+-++|.|..|+|||+|+..+.++.. .+++-+.++++-+++.. ...++..++...-.... .+.+..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 346789999999999999999988754 12234678899998876 45556655544321110 111111
Q ss_pred ---HHHHHHHHHHhc--CCcEEEEEeCCCC
Q 009411 236 ---GRARKLCERLKK--EKKILVILDDIWT 260 (535)
Q Consensus 236 ---~~~~~l~~~l~~--~~~~LlVlDdv~~ 260 (535)
.....+.+++.. ++++|+++||+..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 123356666643 6899999999854
No 253
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.24 E-value=0.0043 Score=56.92 Aligned_cols=26 Identities=38% Similarity=0.553 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
||+|.|++|+||||+|+.+.......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999987643
No 254
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.23 E-value=0.0076 Score=62.09 Aligned_cols=50 Identities=12% Similarity=0.220 Sum_probs=40.3
Q ss_pred cccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcc
Q 009411 150 AFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFD 201 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~ 201 (535)
.++||++.++.+...+..+ .-|.|.|++|+|||+||+.+.......+.|.
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 4789999999998887755 4578999999999999999998765433443
No 255
>PTZ00035 Rad51 protein; Provisional
Probab=96.20 E-value=0.036 Score=55.39 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=39.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc---c-cCcceEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKA---D-KLFDEVVYAEVSQRPDVKKIQGQIADKLGLK 228 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~---~-~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 228 (535)
..++.|+|.+|+|||+|+..++-.... . +.-..++|++-...++..+ +.++++.++..
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~ 179 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLD 179 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCC
Confidence 478899999999999999988754331 0 1123577998877776655 45556665543
No 256
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.19 E-value=0.0092 Score=53.67 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
.|.|.|++|+||||+|+.+.+....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998543
No 257
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.19 E-value=0.0046 Score=53.49 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999986654
No 258
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.18 E-value=0.0049 Score=45.95 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
+|+|.|.+|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 259
>PRK04328 hypothetical protein; Provisional
Probab=96.18 E-value=0.029 Score=53.68 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=31.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP 212 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~ 212 (535)
...++.|.|.+|+|||+|+.++......+ -..++|++....+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~~ 63 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEHP 63 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCCH
Confidence 35789999999999999999987664322 3457888876643
No 260
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.046 Score=59.75 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC-CCCHHHHHHHHHHHhCCCc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKF 229 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~ 229 (535)
.+++.++|+.|+||||++.+++...........+..++... .....+-++...+.++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc
Confidence 47999999999999999999987653221112344444321 2224455555666666544
No 261
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.022 Score=60.24 Aligned_cols=158 Identities=18% Similarity=0.130 Sum_probs=89.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC--CHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP--DVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (535)
.+-|.|.|+.|+|||+||+.+++... +.+...+.+++.+.-. ....+++.+-. ...+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~----------------vfse~~~- 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN----------------VFSEALW- 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH----------------HHHHHHh-
Confidence 35788999999999999999999887 4555566677665432 23333333211 1223333
Q ss_pred CCcEEEEEeCCCCc--------ccccc-----------cCCCCCCCCe--EEEEeecCchhhhc----ccCCcceEecCC
Q 009411 248 EKKILVILDDIWTN--------LDLEN-----------VGIPFGVRGC--RVLMTARSQDVLSS----KMDCQNNFLIGV 302 (535)
Q Consensus 248 ~~~~LlVlDdv~~~--------~~~~~-----------~~~~~~~~gs--~ilvTtR~~~v~~~----~~~~~~~~~l~~ 302 (535)
..+.+|||||++.. .+|.. +...+...+. .+|.|.....-... ..-......|.+
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 46899999999632 11211 1011112233 34555444322211 112234788899
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC-hHHHHHH
Q 009411 303 LNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL-PIAIVTI 346 (535)
Q Consensus 303 L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~Gl-PLai~~~ 346 (535)
+...+-.++++........ ........-+..+|+|. |.-+.++
T Consensus 573 p~~~~R~~IL~~~~s~~~~-~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLS-DITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred cchhHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCCccchhHHHH
Confidence 9988888888776643221 11222344488889874 5544443
No 262
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.13 E-value=0.029 Score=49.99 Aligned_cols=80 Identities=21% Similarity=0.182 Sum_probs=48.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcC-CcE
Q 009411 173 IGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE-KKI 251 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~~ 251 (535)
+.|.|.+|+|||++|.++.... ...++|+.-...++. ++...|.......+......+....+.+.+... +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 6799999999999999997652 234667766666654 455555443333333333333334444444321 234
Q ss_pred EEEEeCC
Q 009411 252 LVILDDI 258 (535)
Q Consensus 252 LlVlDdv 258 (535)
.+++|.+
T Consensus 76 ~VLIDcl 82 (169)
T cd00544 76 VVLIDCL 82 (169)
T ss_pred EEEEEcH
Confidence 7999987
No 263
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.043 Score=56.08 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=50.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC-CCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (535)
...+++++|+.|+||||++..++...........+..+.... .....+-+..+.+.++.+................+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~- 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR- 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc-
Confidence 347999999999999999998887543221123344444322 223444456666777766544333333333334443
Q ss_pred CCcEEEEEeCC
Q 009411 248 EKKILVILDDI 258 (535)
Q Consensus 248 ~~~~LlVlDdv 258 (535)
..-++++|-.
T Consensus 269 -~~d~VLIDTa 278 (420)
T PRK14721 269 -GKHMVLIDTV 278 (420)
T ss_pred -CCCEEEecCC
Confidence 2356667765
No 264
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.11 E-value=0.012 Score=56.12 Aligned_cols=59 Identities=24% Similarity=0.370 Sum_probs=44.0
Q ss_pred HHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHH
Q 009411 159 NDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKI 217 (535)
Q Consensus 159 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 217 (535)
.+|+..+. .++..+|+|.|.||+|||||...+......++|=-.++=|+-|.+++--.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsi 98 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSI 98 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccc
Confidence 34555554 456789999999999999999999999887776666776766666643333
No 265
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.11 E-value=0.048 Score=52.78 Aligned_cols=89 Identities=21% Similarity=0.265 Sum_probs=49.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC-CCCHHHHHHHHHHHhCCCccC----CCchHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYE----ESESGRARKLCE 243 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~ 243 (535)
+.+++.++|++|+||||++..++......+ ..+..++... .....+-+....+..+.+... .+..........
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g--~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQG--KSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH
Confidence 458999999999999999999988765332 2455565442 112234444556666544211 111121112222
Q ss_pred HHhcCCcEEEEEeCCC
Q 009411 244 RLKKEKKILVILDDIW 259 (535)
Q Consensus 244 ~l~~~~~~LlVlDdv~ 259 (535)
.......-++++|-.-
T Consensus 149 ~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 149 KAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHCCCCEEEEeCCC
Confidence 2222334578888874
No 266
>PRK08233 hypothetical protein; Provisional
Probab=96.11 E-value=0.0054 Score=55.50 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+|+|.|.+|+||||||..++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 267
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.10 E-value=0.0098 Score=54.74 Aligned_cols=109 Identities=8% Similarity=0.112 Sum_probs=56.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHH-HHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCC
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK-KIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 249 (535)
.+|.|+|+.|+||||++..+....... ....++. +.++.... .-...+..+-.. ..........+...+.. .
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t-~e~~~E~~~~~~~~~i~q~~v---g~~~~~~~~~i~~aLr~-~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILT-IEDPIEFVHESKRSLINQREV---GLDTLSFENALKAALRQ-D 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEE-EcCCccccccCccceeeeccc---CCCccCHHHHHHHHhcC-C
Confidence 578999999999999999887765422 2333332 22211100 000001111000 11112234455555654 4
Q ss_pred cEEEEEeCCCCcccccccCCCCCCCCeEEEEeecCchh
Q 009411 250 KILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDV 287 (535)
Q Consensus 250 ~~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTtR~~~v 287 (535)
+=++++|.+.+.+.+...... ...|..++.|+....+
T Consensus 75 pd~ii~gEird~e~~~~~l~~-a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 75 PDVILVGEMRDLETIRLALTA-AETGHLVMSTLHTNSA 111 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHHH-HHcCCEEEEEecCCcH
Confidence 679999999876654432111 1345557777766544
No 268
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.06 E-value=0.032 Score=52.78 Aligned_cols=117 Identities=20% Similarity=0.236 Sum_probs=66.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC-----CCCHHHHHHHHHHHhCCCcc-------CCCchH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-----RPDVKKIQGQIADKLGLKFY-------EESESG 236 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~-----~~~~~~~~~~i~~~l~~~~~-------~~~~~~ 236 (535)
...+++|+|.+|.|||||++.+..-... -.+.+++.-.+ .....+-..+++..++.+.. +.+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 3478999999999999999999876542 23333333211 22233455666777664432 122233
Q ss_pred HHHH-HHHHHhcCCcEEEEEeCCCCcccc------cccCCCCC-CCCeEEEEeecCchhhh
Q 009411 237 RARK-LCERLKKEKKILVILDDIWTNLDL------ENVGIPFG-VRGCRVLMTARSQDVLS 289 (535)
Q Consensus 237 ~~~~-l~~~l~~~~~~LlVlDdv~~~~~~------~~~~~~~~-~~gs~ilvTtR~~~v~~ 289 (535)
..+- +.+.+. -++-++|.|..-+..+. -.+..-+. ..|...+..|.+-.++.
T Consensus 115 rQRi~IARALa-l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 115 RQRIGIARALA-LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVR 174 (268)
T ss_pred hhhHHHHHHHh-hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhh
Confidence 3333 344444 57899999997544221 11111111 33556777777776654
No 269
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.04 E-value=0.021 Score=63.05 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=57.8
Q ss_pred cccccHHHHHHHHHHhc-------C--CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHH
Q 009411 150 AFESRMSTLNDVINALK-------N--PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~-------~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 220 (535)
.++|.++.++.|.+.+. + .....+.++|++|+|||++|+.++..... ..+.++.+.-.... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccc----c
Confidence 35787888888777765 1 12357889999999999999999887632 12334443321111 1
Q ss_pred HHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 009411 221 IADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN 261 (535)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 261 (535)
+..-+|.+..-. .......+.+.+......+|+||+++..
T Consensus 530 ~~~LiG~~~gyv-g~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGYV-GFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCcc-cccccchHHHHHHhCCCcEEEeccHhhh
Confidence 222233321111 0111123334444344579999999764
No 270
>PRK06762 hypothetical protein; Provisional
Probab=96.03 E-value=0.0064 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+|.|+|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 271
>PRK05439 pantothenate kinase; Provisional
Probab=96.03 E-value=0.05 Score=53.35 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...-+|+|.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999887654
No 272
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.02 E-value=0.0071 Score=56.24 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.+..+|+|.|.+|+|||||++.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 273
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.02 E-value=0.0095 Score=51.98 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=27.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEE
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAE 207 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~ 207 (535)
..+|.|+|.+|+||||||+.+.+.....+ ..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g--~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG--IKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--S-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEec
Confidence 36899999999999999999999887543 3344543
No 274
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.02 E-value=0.027 Score=51.44 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCc--------ceEEEEEeCCC
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLF--------DEVVYAEVSQR 211 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f--------~~~~wv~v~~~ 211 (535)
.++.|.|++|+|||+++..++........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 588899999999999999998876542222 35788877665
No 275
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.32 Score=47.61 Aligned_cols=162 Identities=10% Similarity=0.075 Sum_probs=89.2
Q ss_pred HHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHh--------ccccCcceEEEEEe-CCCCCHHHHHHHHHHHhCCC
Q 009411 159 NDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQA--------KADKLFDEVVYAEV-SQRPDVKKIQGQIADKLGLK 228 (535)
Q Consensus 159 ~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~--------~~~~~f~~~~wv~v-~~~~~~~~~~~~i~~~l~~~ 228 (535)
+.+.+.+..+. .++..++|..|.||+++|..+.+.. ....|.+.+.++.. +......++. ++.+.+...
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~ 84 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFS 84 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccC
Confidence 34445555444 4677799999999999999998875 22223333444432 1222222222 333333221
Q ss_pred ccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc------ccccCCCCCCCCeEEEEeec-CchhhhcccCCcceEecC
Q 009411 229 FYEESESGRARKLCERLKKEKKILVILDDIWTNLD------LENVGIPFGVRGCRVLMTAR-SQDVLSSKMDCQNNFLIG 301 (535)
Q Consensus 229 ~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~------~~~~~~~~~~~gs~ilvTtR-~~~v~~~~~~~~~~~~l~ 301 (535)
+- ..+++-++|+|++..... +..+..| +.++.+|++|. ...+..........+++.
T Consensus 85 ~~---------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEP--p~~t~~il~~~~~~kll~TI~SRc~~~~f~ 147 (299)
T PRK07132 85 SF---------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEP--PKDTYFLLTTKNINKVLPTIVSRCQVFNVK 147 (299)
T ss_pred Cc---------------ccCCceEEEEecccccCHHHHHHHHHHhhCC--CCCeEEEEEeCChHhChHHHHhCeEEEECC
Confidence 10 114667889999865432 2223233 45666666554 444433334456789999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHH
Q 009411 302 VLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (535)
Q Consensus 302 ~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 345 (535)
+++.++..+.+... + .++ +.+..++...+|.--|+..
T Consensus 148 ~l~~~~l~~~l~~~-~---~~~---~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 148 EPDQQKILAKLLSK-N---KEK---EYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCHHHHHHHHHHc-C---CCh---hHHHHHHHHcCCHHHHHHH
Confidence 99999998877764 2 111 2355666666662244433
No 276
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.00 E-value=0.033 Score=49.55 Aligned_cols=117 Identities=18% Similarity=0.250 Sum_probs=66.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEe---C------------------CCC---------------
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV---S------------------QRP--------------- 212 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v---~------------------~~~--------------- 212 (535)
....+.|+|++|.|||||.+.+|...+.. .+.+|+.- + |++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 34688999999999999999999876532 23333321 0 000
Q ss_pred ------CHHHHHH---HHHHHhCCCcc------CCCch-HHHHHHHHHHhcCCcEEEEEeCC----CCcccccccC--CC
Q 009411 213 ------DVKKIQG---QIADKLGLKFY------EESES-GRARKLCERLKKEKKILVILDDI----WTNLDLENVG--IP 270 (535)
Q Consensus 213 ------~~~~~~~---~i~~~l~~~~~------~~~~~-~~~~~l~~~l~~~~~~LlVlDdv----~~~~~~~~~~--~~ 270 (535)
...++-+ +.++..+.... .-+.. +.-..+.+.+- +++-+|+-|.- +....|+-+. ..
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV-~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIV-NQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHc-cCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 1122222 23333333211 11222 22334555665 57889998864 3333444432 23
Q ss_pred CCCCCeEEEEeecCchhhh
Q 009411 271 FGVRGCRVLMTARSQDVLS 289 (535)
Q Consensus 271 ~~~~gs~ilvTtR~~~v~~ 289 (535)
++..|..||++|.+..+..
T Consensus 183 inr~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 183 INRLGTTVLMATHDLELVN 201 (223)
T ss_pred HhhcCcEEEEEeccHHHHH
Confidence 3467999999999987753
No 277
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.99 E-value=0.045 Score=53.79 Aligned_cols=84 Identities=17% Similarity=0.240 Sum_probs=51.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC------CCchHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE------ESESGRARKLCE 243 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 243 (535)
.+++-|.|+.|+||||||..+....... -..++|+.....++. ..+..+|.+.+. ...++....+..
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4789999999999999999998776433 355889998776654 445566655432 122333333333
Q ss_pred HHhcCCcEEEEEeCCCC
Q 009411 244 RLKKEKKILVILDDIWT 260 (535)
Q Consensus 244 ~l~~~~~~LlVlDdv~~ 260 (535)
.++.+.--++|+|.|-.
T Consensus 126 lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHTTSESEEEEE-CTT
T ss_pred HhhcccccEEEEecCcc
Confidence 34555556999999854
No 278
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.99 E-value=0.041 Score=57.19 Aligned_cols=88 Identities=19% Similarity=0.203 Sum_probs=50.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC-CCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (535)
.+|++++|+.|+||||++.+++.....+..-..+..++... .....+-++...+.++.+................+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~-- 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELR-- 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhcc--
Confidence 47999999999999999999998764322112344554432 223445566666776665433222211112222333
Q ss_pred CcEEEEEeCCC
Q 009411 249 KKILVILDDIW 259 (535)
Q Consensus 249 ~~~LlVlDdv~ 259 (535)
....+++|-.-
T Consensus 334 d~d~VLIDTaG 344 (484)
T PRK06995 334 NKHIVLIDTIG 344 (484)
T ss_pred CCCeEEeCCCC
Confidence 23577777764
No 279
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.96 E-value=0.03 Score=53.19 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=60.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccc----------CcceEEEEEeCCCC-CHHHHHHHHHHHhCCCcc----------
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKADK----------LFDEVVYAEVSQRP-DVKKIQGQIADKLGLKFY---------- 230 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~~~----------~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~---------- 230 (535)
+-.|+|++|+|||+|+..++.....-. .-..+++++...+. .+.+-+..+...++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 557899999999999999987643211 11235666655433 233334444443321100
Q ss_pred -------C---CCchHHHHHHHHHHhcCCcEEEEEeCCCC--------cccccccCCCC----CCCCeEEEEeecCc
Q 009411 231 -------E---ESESGRARKLCERLKKEKKILVILDDIWT--------NLDLENVGIPF----GVRGCRVLMTARSQ 285 (535)
Q Consensus 231 -------~---~~~~~~~~~l~~~l~~~~~~LlVlDdv~~--------~~~~~~~~~~~----~~~gs~ilvTtR~~ 285 (535)
. .........+.+.+...+.-+||+|-+-. ......+...+ ...|+.||+++...
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 0 01223445555555444678999996531 11122211111 13477788887765
No 280
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.95 E-value=0.015 Score=54.68 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=36.4
Q ss_pred HHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 158 LNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 158 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
..++++.+. ..+..+|+|.|+||+|||||...+......+++=-.++=|.-|.+++
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence 345555554 34678999999999999999999998877654444455555454443
No 281
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.94 E-value=0.025 Score=57.78 Aligned_cols=88 Identities=23% Similarity=0.344 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC-HHHHHHHHHHHhCCC-------ccCCCch-----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD-VKKIQGQIADKLGLK-------FYEESES----- 235 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~----- 235 (535)
....++|.|..|+|||||++.+++... .+.++.+-+++... ..++..+++..-+.. ..+.+..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 346799999999999999999986433 35666677777654 344555544332211 1111111
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 236 -GRARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 236 -~~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
..+..+.+++. .++++||++||+..
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 12334555553 47899999999854
No 282
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.94 E-value=0.093 Score=50.73 Aligned_cols=93 Identities=12% Similarity=0.141 Sum_probs=53.3
Q ss_pred HHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCC-------Cc
Q 009411 162 INALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEE-------SE 234 (535)
Q Consensus 162 ~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~-------~~ 234 (535)
.+++...+..+|.|.|.+|+|||||+..+.+..... . .++.+ ..+..+..+ ...+...+.+.-.. ..
T Consensus 96 r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~-~~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~ 169 (290)
T PRK10463 96 RARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--V-PCAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLD 169 (290)
T ss_pred HHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--C-CEEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCc
Confidence 344456778999999999999999999999886543 2 22222 222222222 22234444332111 22
Q ss_pred hHHHHHHHHHHhcCCcEEEEEeCCCC
Q 009411 235 SGRARKLCERLKKEKKILVILDDIWT 260 (535)
Q Consensus 235 ~~~~~~l~~~l~~~~~~LlVlDdv~~ 260 (535)
.......+..|.....-+||++++-+
T Consensus 170 a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 170 AQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 23344445555443446788999864
No 283
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.94 E-value=0.063 Score=51.66 Aligned_cols=87 Identities=17% Similarity=0.264 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH-hCCC-ccCCCchHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK-LGLK-FYEESESGRARKLCERLKK 247 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~-l~~~-~~~~~~~~~~~~l~~~l~~ 247 (535)
.+++=|+|+.|+||||+|.+++-..... -..++|++.-..+++..+. ++... +..- .......+.+..+.+.+..
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 4788899999999999999987665432 3378999998888876543 33333 2111 1111222333333333321
Q ss_pred -C--CcEEEEEeCCC
Q 009411 248 -E--KKILVILDDIW 259 (535)
Q Consensus 248 -~--~~~LlVlDdv~ 259 (535)
. +--|+|+|.+-
T Consensus 137 ~~~~~i~LvVVDSva 151 (279)
T COG0468 137 SGAEKIDLLVVDSVA 151 (279)
T ss_pred hccCCCCEEEEecCc
Confidence 1 35699999874
No 284
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.94 E-value=0.047 Score=48.57 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|.|++|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999876
No 285
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.93 E-value=0.033 Score=62.78 Aligned_cols=106 Identities=21% Similarity=0.253 Sum_probs=58.4
Q ss_pred ccccccHHHHHHHHHHhc-------CCC--ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHH
Q 009411 149 EAFESRMSTLNDVINALK-------NPD--VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~-------~~~--~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 219 (535)
..++|.+..++.+...+. +++ ..++.++|+.|+|||+||+.+++..... -...+.++.+.-.. ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~-~~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFME-KH--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhh-hh---
Confidence 356788888888777765 111 2478899999999999999998765321 12234444433211 11
Q ss_pred HHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 009411 220 QIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN 261 (535)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 261 (535)
.+...+|.++.-. ..+....+.+.+.....-+|+||++...
T Consensus 642 ~~~~LiG~~pgy~-g~~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 642 SVSRLVGAPPGYV-GYEEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred hHHHHhCCCCccc-ccchhHHHHHHHHhCCCCeEEEeehhhC
Confidence 1122233222111 1111123344444333469999999744
No 286
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.92 E-value=0.041 Score=56.37 Aligned_cols=88 Identities=22% Similarity=0.306 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH-HHHHHHHHHHhCCC-------ccCCCch-----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV-KKIQGQIADKLGLK-------FYEESES----- 235 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~i~~~l~~~-------~~~~~~~----- 235 (535)
....++|.|..|+|||||++.+++... .+.++++-+++.... .+...+.+..-+.. ..+.+..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 457889999999999999999987654 345566777776543 34444443332211 0111111
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 236 -GRARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 236 -~~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
..+..+.+++. .++.+|+++||+..
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 12334555553 47899999999954
No 287
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.91 E-value=0.0053 Score=55.08 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
+.|.+.|.+|+||||+|++++...+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 567899999999999999999876643
No 288
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.90 E-value=0.0085 Score=55.61 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+...+|+|+|++|+|||||++.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998754
No 289
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.90 E-value=0.031 Score=58.21 Aligned_cols=85 Identities=24% Similarity=0.320 Sum_probs=52.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCC--CchHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEE--SESGRARKLCERLKK 247 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 247 (535)
..++.|.|.+|+|||||+.+++......+ ..++|++..+. ..++.. -+..++...+.. ........+...+..
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 47899999999999999999987654322 35778876543 333222 234454432211 011123455566655
Q ss_pred CCcEEEEEeCCC
Q 009411 248 EKKILVILDDIW 259 (535)
Q Consensus 248 ~~~~LlVlDdv~ 259 (535)
.+.-++|+|.+.
T Consensus 169 ~~~~~vVIDSIq 180 (454)
T TIGR00416 169 ENPQACVIDSIQ 180 (454)
T ss_pred cCCcEEEEecch
Confidence 566789999984
No 290
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.88 E-value=0.02 Score=55.22 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
+.|.|+|.+|+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999987664
No 291
>PTZ00301 uridine kinase; Provisional
Probab=95.88 E-value=0.0082 Score=55.59 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+|+|.|.+|+||||||+.+.....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999987754
No 292
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.87 E-value=0.049 Score=55.96 Aligned_cols=91 Identities=20% Similarity=0.353 Sum_probs=59.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC-HHHHHHHHHHHhCCC-------ccCCCch-----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD-VKKIQGQIADKLGLK-------FYEESES----- 235 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~----- 235 (535)
..+-++|.|.+|+|||+|+.++.+.... .+-+.++|+-+++... ..++..++...-... ..+.+..
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 3467899999999999999998877542 2346788888887763 455555554431111 1111111
Q ss_pred -HHHHHHHHHHhc--CCcEEEEEeCCCC
Q 009411 236 -GRARKLCERLKK--EKKILVILDDIWT 260 (535)
Q Consensus 236 -~~~~~l~~~l~~--~~~~LlVlDdv~~ 260 (535)
..+..+.+++.. ++++||++||+..
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 123456667653 7899999999954
No 293
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.86 E-value=0.026 Score=58.74 Aligned_cols=85 Identities=25% Similarity=0.311 Sum_probs=53.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCC--CchHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEE--SESGRARKLCERLKK 247 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 247 (535)
..++.|.|.+|+|||||+.+++.....+ -..++|++..+.. ..+. .-++.++...+.. ........+.+.+..
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees~--~qi~-~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEESA--SQIK-LRAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccccH--HHHH-HHHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4689999999999999999998876522 2357888765433 3332 2245565432211 011124455566655
Q ss_pred CCcEEEEEeCCC
Q 009411 248 EKKILVILDDIW 259 (535)
Q Consensus 248 ~~~~LlVlDdv~ 259 (535)
.+.-++|+|.+.
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 566799999984
No 294
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.84 E-value=0.057 Score=53.29 Aligned_cols=87 Identities=14% Similarity=0.203 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC-HHHHHHHHHHHh----CCC----------ccCCC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD-VKKIQGQIADKL----GLK----------FYEES 233 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~l----~~~----------~~~~~ 233 (535)
..+.++|.|..|+|||+|++++.++.. -+.++++-+++..+ +.+++.++-+.- +.. ..+.+
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p 231 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMP 231 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCC
Confidence 346889999999999999999998753 35688888887653 455555543211 110 01111
Q ss_pred ch------HHHHHHHHHHh-cCCcEEEEEeCCC
Q 009411 234 ES------GRARKLCERLK-KEKKILVILDDIW 259 (535)
Q Consensus 234 ~~------~~~~~l~~~l~-~~~~~LlVlDdv~ 259 (535)
.. ...-.+.+++. .++.+|+++|++.
T Consensus 232 ~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~t 264 (369)
T cd01134 232 VAAREASIYTGITIAEYFRDMGYNVALMADSTS 264 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChh
Confidence 11 12234555553 4789999999983
No 295
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.83 E-value=0.0087 Score=54.46 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+.++|.|.|++|+||||+|+.++....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999987653
No 296
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.82 E-value=0.05 Score=56.22 Aligned_cols=91 Identities=23% Similarity=0.350 Sum_probs=59.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC-HHHHHHHHHHHhCCC-------ccCCCch-----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD-VKKIQGQIADKLGLK-------FYEESES----- 235 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~----- 235 (535)
..+-++|.|.+|+|||||+.++.+..... +-+.++++-+++... ..++..++...-... ..+.+..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 34678999999999999999998876643 567888888887653 455555554432111 1111111
Q ss_pred -HHHHHHHHHHh-c-CCcEEEEEeCCCC
Q 009411 236 -GRARKLCERLK-K-EKKILVILDDIWT 260 (535)
Q Consensus 236 -~~~~~l~~~l~-~-~~~~LlVlDdv~~ 260 (535)
..+..+.+++. . ++++||++||+..
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 12345666664 2 6899999999954
No 297
>PRK03839 putative kinase; Provisional
Probab=95.81 E-value=0.0084 Score=54.24 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.|.|.|++|+||||+++.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999875
No 298
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.78 E-value=0.053 Score=52.15 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=30.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR 211 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~ 211 (535)
..++.|.|++|+|||+++.+++.....+ =..++|++...+
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee~ 75 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVESP 75 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC
Confidence 4789999999999999999987664322 235778887643
No 299
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.77 E-value=0.049 Score=57.49 Aligned_cols=85 Identities=19% Similarity=0.242 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC----------------CC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE----------------ES 233 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~----------------~~ 233 (535)
..++.|.|++|+|||||+.+++.....+ =..++|++..+. ..++...+ +.++.+..+ ..
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~~ 337 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESAG 337 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccCC
Confidence 4789999999999999999998876433 235677776554 34444443 455543211 12
Q ss_pred chHHHHHHHHHHhcCCcEEEEEeCCC
Q 009411 234 ESGRARKLCERLKKEKKILVILDDIW 259 (535)
Q Consensus 234 ~~~~~~~l~~~l~~~~~~LlVlDdv~ 259 (535)
..+.+..+.+.+...+.-++|+|.+.
T Consensus 338 ~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 338 LEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 24456666666665556688888874
No 300
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.76 E-value=0.043 Score=61.08 Aligned_cols=179 Identities=20% Similarity=0.267 Sum_probs=88.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh-c-c------------ccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCC
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQA-K-A------------DKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEES 233 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~-~-~------------~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~ 233 (535)
.+.+++.|+|+.+.||||+.+.+.-.. - . -..|+. ++..++..-++..-+..+...+
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStfS~~m-------- 395 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTFSGHM-------- 395 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhHHHHHH--------
Confidence 345789999999999999999886431 0 0 011222 2333333322222111111110
Q ss_pred chHHHHHHHHHHhcCCcEEEEEeCCCCccc---cccc----CCCCCCCCeEEEEeecCchhhhcccCCcc--eEecCCCC
Q 009411 234 ESGRARKLCERLKKEKKILVILDDIWTNLD---LENV----GIPFGVRGCRVLMTARSQDVLSSKMDCQN--NFLIGVLN 304 (535)
Q Consensus 234 ~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~---~~~~----~~~~~~~gs~ilvTtR~~~v~~~~~~~~~--~~~l~~L~ 304 (535)
.....+...+ ..+.|+++|..-...+ -..+ ...+...|+.+|+||....+......... ...+. ++
T Consensus 396 --~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d 470 (782)
T PRK00409 396 --TNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVE-FD 470 (782)
T ss_pred --HHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Ee
Confidence 1122333333 3578999999864322 1111 11122457899999999776532211111 11111 11
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhhcCCHHHHHHHHHHhc
Q 009411 305 ESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEWKSALRELT 366 (535)
Q Consensus 305 ~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~~~~~~~w~~~l~~l~ 366 (535)
. +......+...+... ...|-.|++++ |+|-.+..-|.-+..........++..+.
T Consensus 471 ~-~~l~~~Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 471 E-ETLRPTYRLLIGIPG----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred c-CcCcEEEEEeeCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1 111110111111111 22467788777 78888887777776555556666666553
No 301
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.76 E-value=0.011 Score=65.47 Aligned_cols=184 Identities=16% Similarity=0.182 Sum_probs=85.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh-ccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCc------cC-CCchHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA-KADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKF------YE-ESESGRARK 240 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~-~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~------~~-~~~~~~~~~ 240 (535)
+.+++.|+|+.|.|||||.+.+.-.. ... .-++|.+.....+ ..+.++...++... .. .........
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq----~G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQ----SGIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHH----hCCCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 45789999999999999999987551 110 0011111111000 00111111111000 00 000111222
Q ss_pred HHHHHhcCCcEEEEEeCCCCccc---cccc----CCCCCCCCeEEEEeecCchhhhcccCCcc--eEecCCCCHHHHHHH
Q 009411 241 LCERLKKEKKILVILDDIWTNLD---LENV----GIPFGVRGCRVLMTARSQDVLSSKMDCQN--NFLIGVLNESEARDL 311 (535)
Q Consensus 241 l~~~l~~~~~~LlVlDdv~~~~~---~~~~----~~~~~~~gs~ilvTtR~~~v~~~~~~~~~--~~~l~~L~~~ea~~L 311 (535)
+...+ ..+-|+++|..-...+ -..+ ...+...|+.+|+||....+......... ...+. ++. +....
T Consensus 396 il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~p 471 (771)
T TIGR01069 396 ILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLSP 471 (771)
T ss_pred HHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCce
Confidence 33332 3679999999864322 1111 11112457889999999876422111111 11111 111 11000
Q ss_pred HHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhhcCCHHHHHHHHHHhc
Q 009411 312 FKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEWKSALRELT 366 (535)
Q Consensus 312 f~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~~~~~~~w~~~l~~l~ 366 (535)
..+...+. +. ...|-.|++++ |+|-.+..-|..+.+.....+..++..+.
T Consensus 472 ~Ykl~~G~-~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 472 TYKLLKGI-PG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred EEEECCCC-CC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 00111111 11 12466777776 78888887777776555556666666553
No 302
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.75 E-value=0.056 Score=51.16 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=52.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC------------------
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE------------------ 231 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~------------------ 231 (535)
..++.|.|.+|+|||+|+.++......+ =..++|++..+. ..++.+.+ .+++....+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccc
Confidence 5789999999999999999997653222 245788888654 34444443 333322111
Q ss_pred ---CCchHHHHHHHHHHhcCCcEEEEEeCCC
Q 009411 232 ---ESESGRARKLCERLKKEKKILVILDDIW 259 (535)
Q Consensus 232 ---~~~~~~~~~l~~~l~~~~~~LlVlDdv~ 259 (535)
.........+.+.+...+.-++|+|.+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 1112344455555554456689999875
No 303
>PRK08149 ATP synthase SpaL; Validated
Probab=95.74 E-value=0.032 Score=57.09 Aligned_cols=88 Identities=18% Similarity=0.268 Sum_probs=53.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC-CHHHHHHHHHHHhCCC-------ccCCCch-----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESES----- 235 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 235 (535)
....++|.|.+|+|||||+..+++... .+.+++..++... +..++..+........ ..+.+..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 446889999999999999999987543 2344445555443 4555555555432211 1111111
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 236 -GRARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 236 -~~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
..+..+.+++. .++++||++||+..
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 12334555553 47899999999854
No 304
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.67 E-value=0.023 Score=52.25 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=35.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCcc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY 230 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 230 (535)
.|+|+|-||+||||+|..+......++.| .++-|+...++++. .+||...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL~-------~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNLP-------EALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCChH-------HhcCCCCC
Confidence 58999999999999999976665544323 35566666666544 35665544
No 305
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.67 E-value=0.0088 Score=48.99 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 009411 173 IGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
|.|+|++|+|||+||+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999887754
No 306
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.64 E-value=0.012 Score=53.93 Aligned_cols=29 Identities=38% Similarity=0.558 Sum_probs=25.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
.+.+|+|.|.+|+||||+|+.++......
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 45799999999999999999999988743
No 307
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.64 E-value=0.015 Score=53.24 Aligned_cols=125 Identities=18% Similarity=0.261 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC----C-----CHHH----HHHHH
Q 009411 155 MSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR----P-----DVKK----IQGQI 221 (535)
Q Consensus 155 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~----~-----~~~~----~~~~i 221 (535)
..+-...++.|. +..++.+.|++|.|||.||...+-+.-..+.|+.++++.-.-. . +..+ .+.-+
T Consensus 6 ~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~ 83 (205)
T PF02562_consen 6 NEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPI 83 (205)
T ss_dssp SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHH
T ss_pred CHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHH
Confidence 344455555555 4578999999999999999999877655578888887743211 0 0000 11112
Q ss_pred HHHhCCCccCCCchHHHHHHHH----------HHhc--CCcEEEEEeCCCCc--ccccccCCCCCCCCeEEEEeecCch
Q 009411 222 ADKLGLKFYEESESGRARKLCE----------RLKK--EKKILVILDDIWTN--LDLENVGIPFGVRGCRVLMTARSQD 286 (535)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~----------~l~~--~~~~LlVlDdv~~~--~~~~~~~~~~~~~gs~ilvTtR~~~ 286 (535)
...+..-.... ..+.+.+ ++++ =...++|+|++.+. .++..+.... +.|||+|++--...
T Consensus 84 ~d~l~~~~~~~----~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~-g~~skii~~GD~~Q 157 (205)
T PF02562_consen 84 YDALEELFGKE----KLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI-GEGSKIIITGDPSQ 157 (205)
T ss_dssp HHHHTTTS-TT----CHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB--TT-EEEEEE----
T ss_pred HHHHHHHhChH----hHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc-CCCcEEEEecCcee
Confidence 22221111111 1122221 1111 12479999999654 4666664433 68999999876553
No 308
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.63 E-value=0.026 Score=60.97 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=58.5
Q ss_pred CCcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHh
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL 225 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 225 (535)
.....+.|.++.++.|...+... +.+.++|++|+||||+|+.+.+.... .+++..+|..- ...+....++.++..+
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 34567889998888887766654 47889999999999999999987543 34677788655 3346677777777666
Q ss_pred CCC
Q 009411 226 GLK 228 (535)
Q Consensus 226 ~~~ 228 (535)
|..
T Consensus 104 G~~ 106 (637)
T PRK13765 104 GKQ 106 (637)
T ss_pred CHH
Confidence 543
No 309
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.16 Score=53.92 Aligned_cols=197 Identities=23% Similarity=0.295 Sum_probs=101.7
Q ss_pred CcccccccHHH---HHHHHHHhcCCC---------ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH
Q 009411 147 GYEAFESRMST---LNDVINALKNPD---------VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 147 ~~~~~~gR~~~---~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 214 (535)
.+.+..|.++. +.++++.|.++. ++-+.++|++|.|||.||++++....+- | .+.|.+. .
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~-F 219 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSD-F 219 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchh-h
Confidence 34556677654 555666666432 4668899999999999999999888764 2 2222210 1
Q ss_pred HHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc------------c----ccccC---CCCC-CC
Q 009411 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL------------D----LENVG---IPFG-VR 274 (535)
Q Consensus 215 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~----~~~~~---~~~~-~~ 274 (535)
.+ +.-. ......+.+...-++.-+|++++|.++... . +.++. .-+. +.
T Consensus 220 Ve----mfVG--------vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 220 VE----MFVG--------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred hh----hhcC--------CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 11 1100 111234445544444568999999886331 1 12221 1122 23
Q ss_pred CeEEEEeecCchhh-hc---ccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHH--HHHH--
Q 009411 275 GCRVLMTARSQDVL-SS---KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIA--IVTI-- 346 (535)
Q Consensus 275 gs~ilvTtR~~~v~-~~---~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLa--i~~~-- 346 (535)
|..|+..|...+|. .. ...-.+.+.++.-+-..-.+.++-++....-.+. .. ...|++.+-|.-.| .+++
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~-Vd-l~~iAr~tpGfsGAdL~nl~NE 365 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAED-VD-LKKIARGTPGFSGADLANLLNE 365 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCc-CC-HHHHhhhCCCcccchHhhhHHH
Confidence 44444444444443 11 1223356667766666666777755532221111 11 22377888776433 1222
Q ss_pred HHHhh---cC---CHHHHHHHHHHh
Q 009411 347 ARALR---NK---NTFEWKSALREL 365 (535)
Q Consensus 347 ~~~L~---~~---~~~~w~~~l~~l 365 (535)
|.++. ++ +..+.....+++
T Consensus 366 Aal~aar~n~~~i~~~~i~ea~drv 390 (596)
T COG0465 366 AALLAARRNKKEITMRDIEEAIDRV 390 (596)
T ss_pred HHHHHHHhcCeeEeccchHHHHHHH
Confidence 33333 22 445556666654
No 310
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.62 E-value=0.028 Score=52.91 Aligned_cols=86 Identities=17% Similarity=0.265 Sum_probs=49.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCcc-------------------
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY------------------- 230 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~------------------- 230 (535)
..++.|.|.+|+|||+|+.++......+ .=..++|++...++ .++.+.+ ..++.+..
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~~--~~l~~~~-~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEPP--EELIENM-KSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS-H--HHHHHHH-HTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCCH--HHHHHHH-HHcCCcHHHHhhcCCEEEEeccccccc
Confidence 4789999999999999999977554322 01347788876543 4444443 23332210
Q ss_pred --CCCchHHHHHHHHHHhcCCcEEEEEeCCC
Q 009411 231 --EESESGRARKLCERLKKEKKILVILDDIW 259 (535)
Q Consensus 231 --~~~~~~~~~~l~~~l~~~~~~LlVlDdv~ 259 (535)
..+.......+.+.+...+...+|+|.+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 11223344555555544455799999873
No 311
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.011 Score=50.10 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
.+-|.|.|-+|+|||||+..++....- -|+++|+-..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd~vk 43 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISDLVK 43 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhhHHh
Confidence 356889999999999999999966553 3777765433
No 312
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.61 E-value=0.19 Score=59.70 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
.+-|.++|++|+|||.||++++....+
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 567889999999999999999998764
No 313
>PRK00625 shikimate kinase; Provisional
Probab=95.60 E-value=0.011 Score=52.98 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.|.|+|++|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988865
No 314
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.60 E-value=0.0093 Score=57.67 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 159 NDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 159 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+++.+...+ +-+.++|+.|+|||++++.......
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCST
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCC
Confidence 44555555544 4557999999999999999887644
No 315
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.60 E-value=0.025 Score=51.30 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
..+|+|-||=|+||||||+.+.++...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC
Confidence 468999999999999999999999874
No 316
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.60 E-value=0.013 Score=52.60 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...|.|+|++|+||||+|+.++....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998875
No 317
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.067 Score=52.79 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
..+-|.++|++|.|||-||++|+.....
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 3567889999999999999999988764
No 318
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.58 E-value=0.012 Score=50.64 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~ 210 (535)
++|.|+|..|+|||||++.+.+....++ +...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g-~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRG-YRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcC-CceEEEEEccC
Confidence 4799999999999999999999987543 54444555544
No 319
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.51 Score=44.16 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=40.5
Q ss_pred ccCCcccccccHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 144 SIKGYEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 144 ~~~~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+...+..+-|-++.+++|++.+. -..++-+..+|++|.|||-+|+..+.+-.
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 33456677788999999998765 12356688999999999999999887654
No 320
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.58 E-value=0.042 Score=49.40 Aligned_cols=109 Identities=25% Similarity=0.304 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccc---c---Ccc--eEEEEEeCCCCCHHHHHHHHHHHhCCCcc--CC-----C
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKAD---K---LFD--EVVYAEVSQRPDVKKIQGQIADKLGLKFY--EE-----S 233 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~---~---~f~--~~~wv~v~~~~~~~~~~~~i~~~l~~~~~--~~-----~ 233 (535)
...+++|+|+.|+|||||.+.+..+...- . .|. .+.|+ .+ .+.+..++.... .. +
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34689999999999999999886431110 0 010 12232 11 355666664321 11 1
Q ss_pred chH-HHHHHHHHHhcCC--cEEEEEeCCCCccc---ccccC---CCCCCCCeEEEEeecCchhh
Q 009411 234 ESG-RARKLCERLKKEK--KILVILDDIWTNLD---LENVG---IPFGVRGCRVLMTARSQDVL 288 (535)
Q Consensus 234 ~~~-~~~~l~~~l~~~~--~~LlVlDdv~~~~~---~~~~~---~~~~~~gs~ilvTtR~~~v~ 288 (535)
..+ ..-.+...+.. + +-++++|+.-..-+ .+.+. ..+...|..||++|.+....
T Consensus 90 gGq~qrl~laral~~-~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~ 152 (176)
T cd03238 90 GGELQRVKLASELFS-EPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL 152 (176)
T ss_pred HHHHHHHHHHHHHhh-CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 111 12234444543 5 67889999754321 11111 11112466688888887653
No 321
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.55 E-value=0.084 Score=47.69 Aligned_cols=114 Identities=22% Similarity=0.288 Sum_probs=60.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEE---eCCCCCHHHHH------HHHHHHhCCCc------cCCC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAE---VSQRPDVKKIQ------GQIADKLGLKF------YEES 233 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~---v~~~~~~~~~~------~~i~~~l~~~~------~~~~ 233 (535)
...+++|.|+.|.|||||++.++..... ..+.+++. +.. .+..... .++++.++... ..-+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 3468999999999999999999875432 34444432 211 1221111 11445554331 1112
Q ss_pred chH-HHHHHHHHHhcCCcEEEEEeCCCCccc---ccccC---CCCCCC-CeEEEEeecCchh
Q 009411 234 ESG-RARKLCERLKKEKKILVILDDIWTNLD---LENVG---IPFGVR-GCRVLMTARSQDV 287 (535)
Q Consensus 234 ~~~-~~~~l~~~l~~~~~~LlVlDdv~~~~~---~~~~~---~~~~~~-gs~ilvTtR~~~v 287 (535)
..+ ..-.+...+.. .+-++++|+-...-+ ...+. ...... +..||++|.+...
T Consensus 100 ~G~~qrl~laral~~-~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 100 GGERQRVLLARALAQ-EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 122 22234555553 678999999754322 11111 111122 5678888887654
No 322
>PRK04040 adenylate kinase; Provisional
Probab=95.53 E-value=0.013 Score=53.37 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+|+|+|++|+||||+++.+.....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998864
No 323
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.53 E-value=0.023 Score=56.62 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=40.1
Q ss_pred CcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
++..++|.++.+..++-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 345678999998888777777777778899999999999999998654
No 324
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.29 Score=52.17 Aligned_cols=147 Identities=18% Similarity=0.264 Sum_probs=84.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (535)
.-|.++|++|.|||-||.+++.....+ +|+|-.+ +++.+.+ | ..++..+.+..+-+.-++
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~KyI---G------aSEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----ELLSKYI---G------ASEQNVRDLFERAQSAKP 761 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----HHHHHHh---c------ccHHHHHHHHHHhhccCC
Confidence 457899999999999999998876543 5565443 4444432 2 123456677777777799
Q ss_pred EEEEEeCCCCcc-------------cccccCCCCC----CCCeEEEE-eecCchhhhcccCCc---ceEecCCCCHHHHH
Q 009411 251 ILVILDDIWTNL-------------DLENVGIPFG----VRGCRVLM-TARSQDVLSSKMDCQ---NNFLIGVLNESEAR 309 (535)
Q Consensus 251 ~LlVlDdv~~~~-------------~~~~~~~~~~----~~gs~ilv-TtR~~~v~~~~~~~~---~~~~l~~L~~~ea~ 309 (535)
|+|.+|..++.. ...++..-+. -.|.-|+. |||..-+-.....+. +.+.-+.-++.+-.
T Consensus 762 CiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl 841 (952)
T KOG0735|consen 762 CILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERL 841 (952)
T ss_pred eEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHH
Confidence 999999986531 1222222221 33555554 555543222222222 23334445667777
Q ss_pred HHHHHHhCC--CCCCchhHHHHHHHHHHcCCChH
Q 009411 310 DLFKKLVGD--KIENNDLKSLAMNIVKACRGLPI 341 (535)
Q Consensus 310 ~Lf~~~~~~--~~~~~~l~~~~~~i~~~~~GlPL 341 (535)
++|...... .....+ .+.++.+..|..-
T Consensus 842 ~il~~ls~s~~~~~~vd----l~~~a~~T~g~tg 871 (952)
T KOG0735|consen 842 EILQVLSNSLLKDTDVD----LECLAQKTDGFTG 871 (952)
T ss_pred HHHHHHhhccCCccccc----hHHHhhhcCCCch
Confidence 888776642 112222 4466777777653
No 325
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.52 E-value=0.096 Score=54.01 Aligned_cols=91 Identities=23% Similarity=0.384 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC-CHHHHHHHHHHHhCCC-------ccCCCch-----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESES----- 235 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 235 (535)
..+-++|.|.+|+|||||+..+........ -+.++++-+++.. ...++..++...-... ..+.+..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 346789999999999999999887655321 2467788887765 3455666655432211 1111111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEeCCCC
Q 009411 236 -GRARKLCERLK--KEKKILVILDDIWT 260 (535)
Q Consensus 236 -~~~~~l~~~l~--~~~~~LlVlDdv~~ 260 (535)
..+..+.+++. .++++||++||+..
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 12335666663 47999999999854
No 326
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.50 E-value=0.056 Score=59.31 Aligned_cols=83 Identities=18% Similarity=0.214 Sum_probs=54.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC------CCchHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE------ESESGRARKLCE 243 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 243 (535)
.+++-|.|++|+|||||+.+++...... =..++|++....++. ..+++++.+.+. ...+.....+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 5788899999999999998876654322 245789987776663 366777765432 122223333334
Q ss_pred HHhcCCcEEEEEeCCC
Q 009411 244 RLKKEKKILVILDDIW 259 (535)
Q Consensus 244 ~l~~~~~~LlVlDdv~ 259 (535)
.+..++.-|||+|.+.
T Consensus 133 lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 133 LIRSGALDIVVIDSVA 148 (790)
T ss_pred HhhcCCCeEEEEcchh
Confidence 3445567799999985
No 327
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.50 E-value=0.091 Score=54.35 Aligned_cols=92 Identities=21% Similarity=0.223 Sum_probs=58.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCc--ceEEEEEeCCCC-CHHHHHHHHHHHhCCCc-------cCCCc----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLF--DEVVYAEVSQRP-DVKKIQGQIADKLGLKF-------YEESE---- 234 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f--~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~-------~~~~~---- 234 (535)
.-+-++|.|..|+|||+|+..+.++....+.+ ..++++-+++.. ...+++..+...-.... .+.+.
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 34678999999999999999999876532111 156777777765 44555555543322110 11111
Q ss_pred --hHHHHHHHHHHh--cCCcEEEEEeCCCC
Q 009411 235 --SGRARKLCERLK--KEKKILVILDDIWT 260 (535)
Q Consensus 235 --~~~~~~l~~~l~--~~~~~LlVlDdv~~ 260 (535)
......+.+++. .++++||++||+..
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 112445777776 48899999999854
No 328
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.50 E-value=0.022 Score=60.08 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=42.6
Q ss_pred cccccccHHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEE
Q 009411 148 YEAFESRMSTLNDVINALKN-----PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAE 207 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~ 207 (535)
..++.-..+.++++..||.. ...+++.+.|++|+||||.++.+++... |+.+=|.+
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 34455556677888888862 2357999999999999999999998875 66666764
No 329
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.46 E-value=0.014 Score=52.49 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999987754
No 330
>PRK01184 hypothetical protein; Provisional
Probab=95.42 E-value=0.06 Score=48.83 Aligned_cols=22 Identities=45% Similarity=0.792 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
.+|+|+|++|+||||+++ ++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 479999999999999987 4443
No 331
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.41 E-value=0.023 Score=50.45 Aligned_cols=111 Identities=16% Similarity=0.207 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC--CCHHHHHHHHHHHhCCCccCCCchH-HHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR--PDVKKIQGQIADKLGLKFYEESESG-RARKLCERL 245 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~l~~~l 245 (535)
...+++|.|+.|.|||||.+.++.... ...+.+++.-..- .+..+..+ ..++.-.. -+..+ ..-.+...+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~q-LS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDARR---AGIAMVYQ-LSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHHh---cCeEEEEe-cCHHHHHHHHHHHHH
Confidence 346899999999999999999986543 2345555432111 11111111 11111111 22222 222344555
Q ss_pred hcCCcEEEEEeCCCCccc---cccc---CCCCCCCCeEEEEeecCchh
Q 009411 246 KKEKKILVILDDIWTNLD---LENV---GIPFGVRGCRVLMTARSQDV 287 (535)
Q Consensus 246 ~~~~~~LlVlDdv~~~~~---~~~~---~~~~~~~gs~ilvTtR~~~v 287 (535)
.. ++-++++|+....-+ .+.+ ...+...|..||++|.+...
T Consensus 98 ~~-~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 98 AR-NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred hc-CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 53 678999999854322 1111 11111336668888888653
No 332
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.41 E-value=0.064 Score=48.24 Aligned_cols=26 Identities=42% Similarity=0.510 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+++|.|+.|.|||||.+.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34689999999999999999998754
No 333
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.40 E-value=1 Score=44.53 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=33.0
Q ss_pred eEecCCCCHHHHHHHHHHHhCCCCCC--chhHHHHHHHHHHcCCChHHH
Q 009411 297 NFLIGVLNESEARDLFKKLVGDKIEN--NDLKSLAMNIVKACRGLPIAI 343 (535)
Q Consensus 297 ~~~l~~L~~~ea~~Lf~~~~~~~~~~--~~l~~~~~~i~~~~~GlPLai 343 (535)
++++++++.+|+..++.-........ ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999998776421111 222445667777779999643
No 334
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.40 E-value=0.15 Score=52.96 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHhcc-----ccCcceEEEEEeCCCCCHHHHHHHHHHHhC-CCc-------cCCCc
Q 009411 169 DVHMIGAYGMAGVGKTMLV-KEVARQAKA-----DKLFDEVVYAEVSQRPDVKKIQGQIADKLG-LKF-------YEESE 234 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa-~~~~~~~~~-----~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~-~~~-------~~~~~ 234 (535)
..+-++|.|..|+|||+|| ..+.++... .+.-+.++++.+++..+...-+.+.++.-+ ... .+.+.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3467899999999999997 666776532 123456889999988754333444444433 111 11111
Q ss_pred hH------HHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 235 SG------RARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 235 ~~------~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
.. ..-.+.+++. .++.+|+|+||+..
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 11 2234555553 47899999999954
No 335
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.39 E-value=0.064 Score=52.85 Aligned_cols=31 Identities=23% Similarity=0.497 Sum_probs=26.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
.....+|+|.|++|+|||||+..+......+
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3457899999999999999999998876543
No 336
>PRK14531 adenylate kinase; Provisional
Probab=95.37 E-value=0.053 Score=49.16 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..|.|+|++|+||||+++.++....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998765
No 337
>PRK06851 hypothetical protein; Provisional
Probab=95.37 E-value=0.3 Score=49.01 Aligned_cols=43 Identities=26% Similarity=0.287 Sum_probs=32.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC
Q 009411 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (535)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~ 210 (535)
.+-.+++.|.|++|+|||||++.++.....++ ++..++-|.+.
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G-~~v~~~hC~~d 253 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEERG-FDVEVYHCGFD 253 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhCC-CeEEEEeCCCC
Confidence 44458899999999999999999999886554 55555544433
No 338
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.37 E-value=0.039 Score=46.83 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
..+|.+.|.-|.||||+++.+++.....
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 4689999999999999999999986543
No 339
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.37 E-value=0.036 Score=52.76 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=51.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcccccc
Q 009411 32 SNLEKLKNEVQKLRGAKESVQQKIDDAKRSGEDIEQRVENWLITADEILDAAARIIEGTEDT 93 (535)
Q Consensus 32 ~~~~~l~~~l~~L~~~l~~i~~~l~~a~~~~~~~~~~v~~wl~~l~~~~~d~ed~ld~~~~~ 93 (535)
..+..++.+++-++.+++++|.|++.....++...+..+....++.+.||++|.++|.+...
T Consensus 314 dSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi~k 375 (402)
T PF12061_consen 314 DSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACISK 375 (402)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhhcC
Confidence 34677999999999999999999998755433334559999999999999999999986543
No 340
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.36 E-value=0.012 Score=54.06 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
+|+|.|++|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 341
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.36 E-value=0.022 Score=56.80 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=42.8
Q ss_pred CCcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
-++..++|-++.+..|+..+.+++..-|.|.|..|+||||+|+.+++-..
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35567899999999988888888888888999999999999999977643
No 342
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.36 E-value=0.015 Score=52.46 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+++|+|++|+|||||++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 343
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.34 E-value=0.078 Score=52.60 Aligned_cols=39 Identities=23% Similarity=0.470 Sum_probs=29.9
Q ss_pred HHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 159 NDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 159 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
..+++.+. ..+..+|+|.|.+|+|||||+..+.......
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443 3567899999999999999999988877643
No 344
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.33 E-value=0.056 Score=54.74 Aligned_cols=47 Identities=30% Similarity=0.309 Sum_probs=34.8
Q ss_pred cccccHHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 150 AFESRMSTLNDVINALKN--------------PDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
.++|.++.++.+.-.+.+ ...+.|.++|++|+|||++|+.++.....
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 366777777666544432 12367889999999999999999988754
No 345
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.32 E-value=0.021 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 009411 173 IGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
|.|.|++|+||||+|+.++....
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998765
No 346
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.32 E-value=0.12 Score=49.48 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHhccccCcceE-EEEEeCCCC-CHHHHHHHHHHHhCCC-------ccCCCchH--
Q 009411 169 DVHMIGAYGMAGVGKTMLV-KEVARQAKADKLFDEV-VYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESESG-- 236 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa-~~~~~~~~~~~~f~~~-~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-- 236 (535)
.-+-++|.|.+|+|||+|| ..+.++.. -+.+ +++-+++.. ...++..++...-... ..+.+...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~~----~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQKG----KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhcC----CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 3467899999999999996 55655432 3334 677777765 3455555554332111 11111111
Q ss_pred ----HHHHHHHHHh-cCCcEEEEEeCCCCc-cccccc
Q 009411 237 ----RARKLCERLK-KEKKILVILDDIWTN-LDLENV 267 (535)
Q Consensus 237 ----~~~~l~~~l~-~~~~~LlVlDdv~~~-~~~~~~ 267 (535)
.+-.+.+++. .++.+||++||+..- ..++++
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 1234444443 378999999998543 345554
No 347
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.31 E-value=0.02 Score=51.49 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
...+|+|+|++|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999988753
No 348
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.31 E-value=0.071 Score=55.87 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=54.0
Q ss_pred HHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceE-EEEEeCCCCCH-HHHHHHHHHHh-CCCccCCCc--
Q 009411 161 VINALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEV-VYAEVSQRPDV-KKIQGQIADKL-GLKFYEESE-- 234 (535)
Q Consensus 161 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~-~wv~v~~~~~~-~~~~~~i~~~l-~~~~~~~~~-- 234 (535)
+++.+. -..-.-..|+|++|+|||||++.+++..... +-++. +.+-|++.+.. .++.+.+-..+ ....+....
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~ 484 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDH 484 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHH
Confidence 344444 2234667899999999999999999876432 23333 35566665532 22322220001 011111111
Q ss_pred ---hHHHHHHHHHH-hcCCcEEEEEeCCCC
Q 009411 235 ---SGRARKLCERL-KKEKKILVILDDIWT 260 (535)
Q Consensus 235 ---~~~~~~l~~~l-~~~~~~LlVlDdv~~ 260 (535)
......+.+++ ..++.+||++|++..
T Consensus 485 ~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 485 TTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 11233444455 347899999999853
No 349
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.31 E-value=0.048 Score=47.27 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+++|.|..|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34789999999999999999998754
No 350
>PF13245 AAA_19: Part of AAA domain
Probab=95.30 E-value=0.04 Score=41.84 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=18.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
+.+++.|.|++|.|||+++......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567888999999999555544443
No 351
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.30 E-value=0.014 Score=52.86 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 352
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.30 E-value=0.051 Score=53.95 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 009411 173 IGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+++.|++|.||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998765
No 353
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.29 E-value=0.028 Score=50.97 Aligned_cols=36 Identities=28% Similarity=0.319 Sum_probs=28.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEE
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAE 207 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~ 207 (535)
.++|.|+|+.|+|||||+..+...... .|..++..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~--~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPD--KFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTT--TEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccc--ccccceeec
Confidence 478999999999999999999998763 375444443
No 354
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.29 E-value=0.014 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 355
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.28 E-value=0.059 Score=48.13 Aligned_cols=80 Identities=20% Similarity=0.151 Sum_probs=43.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCC---CchHHHHHHHHHHhcC
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEE---SESGRARKLCERLKKE 248 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~l~~~l~~~ 248 (535)
++.|.|.+|+|||++|..+...... .++++.-... .-.+....|........... .....+..+......
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~- 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA- 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC-
Confidence 6889999999999999999876432 1344443333 33455555544443332221 111123333333222
Q ss_pred CcEEEEEeCC
Q 009411 249 KKILVILDDI 258 (535)
Q Consensus 249 ~~~LlVlDdv 258 (535)
+.-++++|.+
T Consensus 76 ~~~~VlID~L 85 (170)
T PRK05800 76 PGRCVLVDCL 85 (170)
T ss_pred CCCEEEehhH
Confidence 2337888887
No 356
>PRK06217 hypothetical protein; Validated
Probab=95.28 E-value=0.016 Score=52.67 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCc--ceEEEE
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKADKLF--DEVVYA 206 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~~~~f--~~~~wv 206 (535)
.|.|.|.+|+||||+|+.+...... .+| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeec
Confidence 4899999999999999999988754 233 445553
No 357
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.28 E-value=0.025 Score=56.19 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=39.1
Q ss_pred CCcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.++..++|.+..++.+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3456788999988887765555555668899999999999999998764
No 358
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.28 E-value=0.074 Score=47.97 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|.|+.|.|||||++.++...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4689999999999999999998764
No 359
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.25 E-value=0.07 Score=54.71 Aligned_cols=92 Identities=23% Similarity=0.256 Sum_probs=59.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc------c-----cCcceEEEEEeCCCCCHHHHHHHHHHHhC-CCc-------
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA------D-----KLFDEVVYAEVSQRPDVKKIQGQIADKLG-LKF------- 229 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~------~-----~~f~~~~wv~v~~~~~~~~~~~~i~~~l~-~~~------- 229 (535)
..+-++|.|-+|+|||||+..+.++... . +.-..++++-+++.....+.+.+.+..-+ ...
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 3467899999999999999999987652 0 01115677888887655555555555444 111
Q ss_pred cCCCch------HHHHHHHHHHh--cCCcEEEEEeCCCC
Q 009411 230 YEESES------GRARKLCERLK--KEKKILVILDDIWT 260 (535)
Q Consensus 230 ~~~~~~------~~~~~l~~~l~--~~~~~LlVlDdv~~ 260 (535)
.+.+.. ..+..+.+++. .++++||++||+..
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 111111 12345667776 47999999999943
No 360
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.25 E-value=0.11 Score=53.16 Aligned_cols=88 Identities=23% Similarity=0.393 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC-HHHHHHHHHHHhCCC-------ccCCCchH----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD-VKKIQGQIADKLGLK-------FYEESESG---- 236 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~---- 236 (535)
....++|.|..|+|||||.+.+++... .+.++++-+++... ..++....+..-+.. ..+.+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 456899999999999999999988754 35678888887653 344443333221111 01111111
Q ss_pred --HHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 237 --RARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 237 --~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
.+..+.+++. .++++|+++||+..
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 2334555553 47899999999854
No 361
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.24 E-value=0.048 Score=55.99 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=49.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHh-----CCCc-cCCCch------HH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL-----GLKF-YEESES------GR 237 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l-----~~~~-~~~~~~------~~ 237 (535)
...++|+|..|+|||||++.++..... ..++++..--...++.++....+... +.-. .+.+.. ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 467999999999999999988765431 23444443223334444444333322 1101 111111 12
Q ss_pred HHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 238 ARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 238 ~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
...+.+++. .++.+|+++||+..
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHH
Confidence 234555553 37899999999854
No 362
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.24 E-value=0.14 Score=52.78 Aligned_cols=98 Identities=21% Similarity=0.319 Sum_probs=61.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC-HHHHHHHHHHHhCCC-------ccCCCch-----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD-VKKIQGQIADKLGLK-------FYEESES----- 235 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~----- 235 (535)
..+-++|.|.+|+|||+|+..+....... +-..++++-+++... ..+++.++...-... ..+.+..
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34678999999999999999988765432 234677888877653 455666664432111 1111111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEeCCCCc-cccccc
Q 009411 236 -GRARKLCERLK--KEKKILVILDDIWTN-LDLENV 267 (535)
Q Consensus 236 -~~~~~l~~~l~--~~~~~LlVlDdv~~~-~~~~~~ 267 (535)
..+..+.+++. +++++||++||+..- ...+++
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REi 256 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEV 256 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHH
Confidence 12345666774 368999999999543 334443
No 363
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.23 E-value=0.039 Score=54.37 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=36.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 220 (535)
.+++.+.|.||+||||+|.+.+-.....+ ..++-|+..+..++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999776655433 44777777776666666554
No 364
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.22 E-value=0.045 Score=45.60 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=30.8
Q ss_pred ccccHHHHHHHH----HHhcC---CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 151 FESRMSTLNDVI----NALKN---PDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 151 ~~gR~~~~~~l~----~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
++|-.-..+.++ +.+.+ ..+-|++.+|.+|+|||.+++.+++..
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 445544444444 44443 345688999999999999999998873
No 365
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.21 E-value=0.016 Score=50.16 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+|.|.|++|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 366
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.20 E-value=0.022 Score=50.71 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
..++++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4579999999999999999999987754
No 367
>PLN02165 adenylate isopentenyltransferase
Probab=95.19 E-value=0.025 Score=55.70 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=25.7
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 166 KNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 166 ~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+....+|+|+|+.|+|||+||..++....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 455567999999999999999999988754
No 368
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.18 E-value=0.029 Score=54.05 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=36.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP 212 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~ 212 (535)
+..+++.|.|.+|+|||+++.++....... ...++||+..+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCCH
Confidence 345899999999999999999999887644 7779999988753
No 369
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.18 E-value=0.014 Score=48.75 Aligned_cols=24 Identities=42% Similarity=0.527 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 173 IGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
|.|.|.+|+|||++|+.++.....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 679999999999999999998764
No 370
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.16 E-value=0.062 Score=50.70 Aligned_cols=118 Identities=21% Similarity=0.290 Sum_probs=64.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc-c---cC-------c---ceEEEEEeCCC----C--CH---------------
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKA-D---KL-------F---DEVVYAEVSQR----P--DV--------------- 214 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~-~---~~-------f---~~~~wv~v~~~----~--~~--------------- 214 (535)
...++|+|+.|.|||||.+.+..-... + .. + ..+.||.=... + ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 378999999999999999999873221 0 01 1 23555532111 1 11
Q ss_pred -------HHHHHHHHHHhCCCc------cCCCchHHHHH-HHHHHhcCCcEEEEEeCCCCcc------cccccCCCCCCC
Q 009411 215 -------KKIQGQIADKLGLKF------YEESESGRARK-LCERLKKEKKILVILDDIWTNL------DLENVGIPFGVR 274 (535)
Q Consensus 215 -------~~~~~~i~~~l~~~~------~~~~~~~~~~~-l~~~l~~~~~~LlVlDdv~~~~------~~~~~~~~~~~~ 274 (535)
.+...+.++.++... ..-+..+..+. +.+.|. .++=|++||.--..- .+-.+...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~-~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALA-QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhc-cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 134444555554431 12233333443 344554 578899999854321 122221222344
Q ss_pred CeEEEEeecCchhh
Q 009411 275 GCRVLMTARSQDVL 288 (535)
Q Consensus 275 gs~ilvTtR~~~v~ 288 (535)
|+-||++|.+-...
T Consensus 189 g~tIl~vtHDL~~v 202 (254)
T COG1121 189 GKTVLMVTHDLGLV 202 (254)
T ss_pred CCEEEEEeCCcHHh
Confidence 88899999887543
No 371
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.78 Score=42.75 Aligned_cols=73 Identities=27% Similarity=0.357 Sum_probs=44.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhc
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (535)
+..+-|.++|++|.|||.||+.++++-... | +.|... +...+ .||.. ......+.+--+.
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~--f-----irvvgs----efvqk---ylgeg------prmvrdvfrlake 246 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAA--F-----IRVVGS----EFVQK---YLGEG------PRMVRDVFRLAKE 246 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchh--e-----eeeccH----HHHHH---HhccC------cHHHHHHHHHHhc
Confidence 456778899999999999999999986532 3 333221 11221 12211 1223344444445
Q ss_pred CCcEEEEEeCCCC
Q 009411 248 EKKILVILDDIWT 260 (535)
Q Consensus 248 ~~~~LlVlDdv~~ 260 (535)
+.+.+|.+|.++.
T Consensus 247 napsiifideida 259 (408)
T KOG0727|consen 247 NAPSIIFIDEIDA 259 (408)
T ss_pred cCCcEEEeehhhh
Confidence 6788889998853
No 372
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.15 E-value=0.024 Score=52.62 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=28.1
Q ss_pred HHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 163 NALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 163 ~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+.+...++++|+++|..|+|||||...+.+...
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344567899999999999999999999988753
No 373
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.14 E-value=0.096 Score=46.62 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+++|+|+.|.|||||++.+.....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999987643
No 374
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=95.13 E-value=0.12 Score=53.65 Aligned_cols=92 Identities=22% Similarity=0.229 Sum_probs=58.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcccc--CcceEEEEEeCCCC-CHHHHHHHHHHHhCCC-------ccCCCc----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADK--LFDEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESE---- 234 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~--~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~---- 234 (535)
..+-++|.|..|+|||+|+..+.++....+ .=-.++++-+++.. ...+++.++...-... ..+.+.
T Consensus 142 ~GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~ 221 (460)
T PRK04196 142 RGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERI 221 (460)
T ss_pred CCCEEEeeCCCCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHH
Confidence 346788999999999999999998765321 01156778887765 4556666665532211 011111
Q ss_pred --hHHHHHHHHHHh--cCCcEEEEEeCCCC
Q 009411 235 --SGRARKLCERLK--KEKKILVILDDIWT 260 (535)
Q Consensus 235 --~~~~~~l~~~l~--~~~~~LlVlDdv~~ 260 (535)
.-....+.+++. .++++||++||+..
T Consensus 222 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 222 LTPRMALTAAEYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcChHH
Confidence 113446777776 57999999999854
No 375
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.13 E-value=0.1 Score=48.62 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.|.|.|++|+||||+|+.++....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987765
No 376
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.12 E-value=0.092 Score=53.05 Aligned_cols=41 Identities=27% Similarity=0.321 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR 211 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~ 211 (535)
.++.|.|.+|+|||.||..++.+...........+++.+..
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecch
Confidence 57899999999999999999998822233555666666553
No 377
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.11 E-value=0.22 Score=46.93 Aligned_cols=40 Identities=25% Similarity=0.387 Sum_probs=30.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR 211 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~ 211 (535)
..++.|.|.+|+|||+|+.+++.....+ -..++|++....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~ 59 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEES 59 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCC
Confidence 4789999999999999999887654322 346788877443
No 378
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.09 E-value=0.083 Score=47.40 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|.|+.|.|||||.+.++...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4689999999999999999998754
No 379
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.09 E-value=0.04 Score=48.41 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=27.9
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 165 LKNPDVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 165 L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
+...+..+|.+.|.+|.||||+|..+.......
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 345567899999999999999999999887654
No 380
>PRK05973 replicative DNA helicase; Provisional
Probab=95.09 E-value=0.16 Score=47.85 Aligned_cols=48 Identities=19% Similarity=0.181 Sum_probs=33.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI 221 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 221 (535)
..++.|.|.+|+|||+++.++......+ =..++|++.... ..++...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC--HHHHHHHH
Confidence 4688999999999999999988765432 234677776654 34444443
No 381
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.08 E-value=0.064 Score=49.20 Aligned_cols=118 Identities=21% Similarity=0.249 Sum_probs=64.3
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccc-cCcceEEEEEeCCCCCHHHHHHHHHHHh--------CCCccC
Q 009411 161 VINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKAD-KLFDEVVYAEVSQRPDVKKIQGQIADKL--------GLKFYE 231 (535)
Q Consensus 161 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~wv~v~~~~~~~~~~~~i~~~l--------~~~~~~ 231 (535)
++..|-..+..-..|.|++|+|||||.+.+++-.... +.|-..--+-+.... +|+..+ +...+-
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers-------EIag~~~gvpq~~~g~R~dV 200 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS-------EIAGCLNGVPQHGRGRRMDV 200 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc-------hhhccccCCchhhhhhhhhh
Confidence 5555655665667899999999999999998875542 234322111122211 121111 111111
Q ss_pred CCchHHHHHHHHHHhcCCcEEEEEeCCCCcccccccCCCCCCCCeEEEEeecCch
Q 009411 232 ESESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQD 286 (535)
Q Consensus 232 ~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTtR~~~ 286 (535)
.+..-..+-+.....+-.+=++|+|.+-..++...+.... ..|.+++.|..-..
T Consensus 201 ld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~-~~GVkli~TaHG~~ 254 (308)
T COG3854 201 LDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL-HAGVKLITTAHGNG 254 (308)
T ss_pred cccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH-hcCcEEEEeecccc
Confidence 1111123344445555567899999998776554442221 45787777765443
No 382
>PRK14527 adenylate kinase; Provisional
Probab=95.08 E-value=0.024 Score=51.81 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
...+|.|+|++|+||||+|+.+++....
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4578999999999999999999887753
No 383
>PRK13947 shikimate kinase; Provisional
Probab=95.07 E-value=0.02 Score=51.23 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
-|.|+|++|+||||+|+.+.+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999988753
No 384
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.06 E-value=0.05 Score=51.10 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
+..|.|++|.|||+++..+....
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 78899999999998777777665
No 385
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.04 E-value=0.019 Score=51.83 Aligned_cols=24 Identities=33% Similarity=0.623 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+|+|.|.+|+||||||+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998765
No 386
>COG4240 Predicted kinase [General function prediction only]
Probab=95.04 E-value=0.16 Score=46.50 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=53.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhC-----CCccCCCchHHHHHH
Q 009411 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLG-----LKFYEESESGRARKL 241 (535)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~l 241 (535)
.++.-+++|.|+-|+||||++..+++....++- ..+...++.+-+-...-...++++.. ...+...+......+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 445678999999999999999999998776542 36666766665544444455555531 112233444556667
Q ss_pred HHHHhcCC
Q 009411 242 CERLKKEK 249 (535)
Q Consensus 242 ~~~l~~~~ 249 (535)
++.+.+++
T Consensus 126 Lnai~~g~ 133 (300)
T COG4240 126 LNAIARGG 133 (300)
T ss_pred HHHHhcCC
Confidence 77776554
No 387
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.03 E-value=0.064 Score=58.03 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=50.5
Q ss_pred cccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCC
Q 009411 148 YEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGL 227 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 227 (535)
...++|.++.++.+...+... +.+.++|++|+||||+|+.+.+..... .|...+++.-+. .+...+++.++..++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n~~-~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPNPE-DPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeCCC-CCchHHHHHHHHhhch
Confidence 456789888888777766654 356699999999999999999877543 343344333222 2344556666665543
No 388
>PRK13949 shikimate kinase; Provisional
Probab=95.03 E-value=0.021 Score=51.03 Aligned_cols=24 Identities=42% Similarity=0.433 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
-|.|+|++|+||||+++.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998875
No 389
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.02 E-value=0.06 Score=47.20 Aligned_cols=114 Identities=21% Similarity=0.208 Sum_probs=58.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEE---EEeCCCCCHHHHHHHHH--H--HhCCC--ccCCCchH---H-
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVY---AEVSQRPDVKKIQGQIA--D--KLGLK--FYEESESG---R- 237 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~w---v~v~~~~~~~~~~~~i~--~--~l~~~--~~~~~~~~---~- 237 (535)
..|-|++..|.||||+|...+-+....+ + .+.+ +.-........+++.+- . ..+.. .......+ .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g-~-~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG-Y-RVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 4678888889999999998887755432 2 2333 33332344444444430 0 00110 00011111 1
Q ss_pred ---HHHHHHHHhcCCcEEEEEeCCCCcccc-----cccC--CCCCCCCeEEEEeecCch
Q 009411 238 ---ARKLCERLKKEKKILVILDDIWTNLDL-----ENVG--IPFGVRGCRVLMTARSQD 286 (535)
Q Consensus 238 ---~~~l~~~l~~~~~~LlVlDdv~~~~~~-----~~~~--~~~~~~gs~ilvTtR~~~ 286 (535)
.....+.+..+.-=|||||++-..-.+ +.+. ......+.-||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 122333344445569999998543211 1111 111145678999999964
No 390
>PRK14529 adenylate kinase; Provisional
Probab=95.01 E-value=0.08 Score=49.39 Aligned_cols=83 Identities=17% Similarity=0.136 Sum_probs=46.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccCcce--EEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCc
Q 009411 173 IGAYGMAGVGKTMLVKEVARQAKADKLFDE--VVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~~~~~~f~~--~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (535)
|.|.|++|+||||+++.++...... +.+. .+.-.+..........++++..- .-.++.-....+.+++.....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G----~lvpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRG----DLVPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhcc----CcchHHHHHHHHHHHHhccCC
Confidence 7889999999999999999887642 2321 11112222233334444444332 122233344455566643224
Q ss_pred EEEEEeCCCC
Q 009411 251 ILVILDDIWT 260 (535)
Q Consensus 251 ~LlVlDdv~~ 260 (535)
.-+|||..-.
T Consensus 78 ~g~iLDGfPR 87 (223)
T PRK14529 78 NGWLLDGFPR 87 (223)
T ss_pred CcEEEeCCCC
Confidence 5688999843
No 391
>PRK14530 adenylate kinase; Provisional
Probab=95.00 E-value=0.023 Score=53.11 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+.|.|+|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999988764
No 392
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.00 E-value=0.09 Score=51.70 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=41.2
Q ss_pred ccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHH
Q 009411 149 EAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKK 216 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~ 216 (535)
+.++=..+....++.++... +.|.|.|++|+||||+|+.++...... .+.|..+...+..+
T Consensus 45 ~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~D 105 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRID 105 (327)
T ss_pred CCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhh
Confidence 34444555566677777543 468899999999999999999987632 23455555444433
No 393
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.98 E-value=0.12 Score=49.23 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
+|+|.|.+|+||||+++.+.+..+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999887653
No 394
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.96 E-value=0.02 Score=51.78 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
++|+|+|+.|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999999854
No 395
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.96 E-value=0.036 Score=49.36 Aligned_cols=23 Identities=48% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 009411 173 IGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
|.|.|.+|+|||||++.+++..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 68999999999999999998874
No 396
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.95 E-value=0.02 Score=50.12 Aligned_cols=20 Identities=40% Similarity=0.600 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 009411 172 MIGAYGMAGVGKTMLVKEVA 191 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~ 191 (535)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 397
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.95 E-value=0.25 Score=48.84 Aligned_cols=93 Identities=20% Similarity=0.332 Sum_probs=61.9
Q ss_pred ccccccHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeC----CCC---CHH
Q 009411 149 EAFESRMSTLNDVINALK------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVS----QRP---DVK 215 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~----~~~---~~~ 215 (535)
..|+|-++.++++++.+. +..-+++.++|+.|.|||||+..+.+-... | .+|.-.. +.+ -+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~---y--~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE---Y--PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe---E--EEEEecCCccccChhhhCCH
Confidence 378999999999999886 445689999999999999999999887653 2 3333221 111 134
Q ss_pred HHHHHHHHHhCCCccCCCchHHHHHHHHHHh
Q 009411 216 KIQGQIADKLGLKFYEESESGRARKLCERLK 246 (535)
Q Consensus 216 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 246 (535)
++-..+.+.++......-.......+.+...
T Consensus 136 ~~r~~~~~~~~~~i~g~l~p~~~~~L~~~y~ 166 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGELCPWCRKRLLEEYG 166 (358)
T ss_pred hHHHHHHHHhCcccCCCcCHHHHHHHHHHhC
Confidence 5556667777765544433333344444443
No 398
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.93 E-value=0.068 Score=53.48 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=46.2
Q ss_pred ccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHH
Q 009411 151 FESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI 221 (535)
Q Consensus 151 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 221 (535)
++|+++.+..+...+..+ +-+.+.|++|+|||+||+.++...... .+++.........++....
T Consensus 26 ~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~~~-----~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALGLP-----FVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhCCC-----eEEEecCCCCCHHHhcCch
Confidence 678888777776666544 457799999999999999999887632 3456666666665555443
No 399
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.93 E-value=0.029 Score=52.54 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=38.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeC---------CCCCHHHH--HHHHHHHhCCCccC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVS---------QRPDVKKI--QGQIADKLGLKFYE 231 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~---------~~~~~~~~--~~~i~~~l~~~~~~ 231 (535)
....|.++||+|+||||..+.++.+...++. ...-|++. -+.++++. .++..++.+..+.+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~--ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKT--PPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccC--CCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 3567889999999999999999988765532 22223322 22344443 34666766655443
No 400
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.92 E-value=0.17 Score=52.12 Aligned_cols=88 Identities=24% Similarity=0.402 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC-CHHHHHHHHHHHhCCCc-------cCCCch-----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLKF-------YEESES----- 235 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~----- 235 (535)
....++|.|..|+|||||++.+..... .+.++...++... ...++...+...-+... .+.+..
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 346799999999999999998876432 3444444555443 44555555544322211 111111
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 236 -GRARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 236 -~~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
..+..+.+++. .++++||++||+..
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 12234555553 47899999999854
No 401
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.92 E-value=0.16 Score=50.14 Aligned_cols=88 Identities=26% Similarity=0.383 Sum_probs=51.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC-CCHHHHHHHHHHHhCCC-------ccCCCch-----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-PDVKKIQGQIADKLGLK-------FYEESES----- 235 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~----- 235 (535)
....++|.|..|.|||||.+.+..... .+.....-++.. ....++.......-+.. ..+.+..
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 346789999999999999998887654 233444455433 34555555554432211 1111111
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 236 -GRARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 236 -~~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
.....+.+++. .++.+|+++||+..
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 12234444442 47899999999854
No 402
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=94.92 E-value=0.11 Score=53.97 Aligned_cols=91 Identities=22% Similarity=0.331 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC-HHHHHHHHHHHhCCCc--------------cCCC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD-VKKIQGQIADKLGLKF--------------YEES 233 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~l~~~~--------------~~~~ 233 (535)
..+-++|.|.+|+|||+|+..+....... +-+.++++-+++... ..++...+...-.... .+.+
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 34678999999999999999988773321 126788888887753 4566666655211110 0111
Q ss_pred ch------HHHHHHHHHHhc-C-CcEEEEEeCCCC
Q 009411 234 ES------GRARKLCERLKK-E-KKILVILDDIWT 260 (535)
Q Consensus 234 ~~------~~~~~l~~~l~~-~-~~~LlVlDdv~~ 260 (535)
.. ..+..+.+++.. + +++||++||+..
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR 273 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFR 273 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchH
Confidence 11 123456777753 4 489999999954
No 403
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.92 E-value=0.077 Score=54.42 Aligned_cols=88 Identities=17% Similarity=0.276 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC-CHHHHHHHHHHHhCCC-------ccCCCch-----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESES----- 235 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 235 (535)
....++|.|..|+|||||++.+++... .+..++..+++.. .+.+.+.+....-... ..+.+..
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 456889999999999999998887543 4445666666654 3335455443211000 0111111
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 236 -GRARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 236 -~~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
..+..+.+++. .++++||++||+..
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 12334555553 47899999999954
No 404
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.25 Score=54.85 Aligned_cols=102 Identities=19% Similarity=0.227 Sum_probs=62.1
Q ss_pred ccccHHHHHHHHHHhc-------CC-CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHH
Q 009411 151 FESRMSTLNDVINALK-------NP-DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (535)
Q Consensus 151 ~~gR~~~~~~l~~~L~-------~~-~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 222 (535)
++|-++.+..|.+.+. +. ....+.+.|+.|+|||-||+.++...-. ..+..+-++.+. ... +.
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fg--se~~~IriDmse------~~e-vs 634 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFG--SEENFIRLDMSE------FQE-VS 634 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcC--CccceEEechhh------hhh-hh
Confidence 4566666677766665 11 3456778999999999999999987642 233344444333 112 22
Q ss_pred HHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc
Q 009411 223 DKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL 262 (535)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~ 262 (535)
+..+. ++.-...+...++-+.++...-.+|+||||+..+
T Consensus 635 kligs-p~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 635 KLIGS-PPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred hccCC-CcccccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 22232 2322333445578888876444688899997653
No 405
>PRK05922 type III secretion system ATPase; Validated
Probab=94.90 E-value=0.12 Score=52.96 Aligned_cols=88 Identities=23% Similarity=0.350 Sum_probs=52.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC-CHHHHHHHHHHHhCCCc-------cCCCch-----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLKF-------YEESES----- 235 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~----- 235 (535)
....++|.|..|+|||||.+.+..... .+...++.++... ...+.+.+......... .+.+..
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 346789999999999999999987643 3334444444432 33455544443332211 011111
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 236 -GRARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 236 -~~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
..+..+.+++. .++++||++||+..
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 12334556663 47899999999954
No 406
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.90 E-value=0.028 Score=51.55 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+|.|.|.+|+||||+|+.++....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998753
No 407
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.89 E-value=0.044 Score=53.98 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQ 218 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 218 (535)
+++.+.|-||+||||+|...+-....++ ..++-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHh
Confidence 6899999999999999988877655433 225555555555544444
No 408
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.89 E-value=0.22 Score=49.37 Aligned_cols=28 Identities=36% Similarity=0.477 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
+..++.++|++|+||||++..++.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4689999999999999999999987764
No 409
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.87 E-value=0.026 Score=46.94 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 173 IGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
|.|+|..|+|||||.+.++.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999976543
No 410
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.86 E-value=0.14 Score=45.53 Aligned_cols=117 Identities=17% Similarity=0.077 Sum_probs=60.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceE-EEEEeCCCCCHHHHHHHHH---HHhCCC--ccCCCc---hHH---
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEV-VYAEVSQRPDVKKIQGQIA---DKLGLK--FYEESE---SGR--- 237 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~-~wv~v~~~~~~~~~~~~i~---~~l~~~--~~~~~~---~~~--- 237 (535)
...|-|++..|.||||.|..++-+....+.--.+ =|+.-+........+..+. .+.+.. +...+. ...
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 3678888889999999999888776543321111 2444333344444444430 001111 111111 111
Q ss_pred -HHHHHHHHhcCCcEEEEEeCCCCccccc-----ccC--CCCCCCCeEEEEeecCch
Q 009411 238 -ARKLCERLKKEKKILVILDDIWTNLDLE-----NVG--IPFGVRGCRVLMTARSQD 286 (535)
Q Consensus 238 -~~~l~~~l~~~~~~LlVlDdv~~~~~~~-----~~~--~~~~~~gs~ilvTtR~~~ 286 (535)
.....+.+..++-=|||||.+-..-.+. .+. +.....+..||+|-|+..
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 2233344444555699999985332211 111 111245678999999874
No 411
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.86 E-value=0.057 Score=55.37 Aligned_cols=46 Identities=22% Similarity=0.166 Sum_probs=33.8
Q ss_pred cccccHHHHHHHHHHhc-------CC---------CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 150 AFESRMSTLNDVINALK-------NP---------DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~-------~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.++|.+..++.+...+. .. ..+.+.++|++|+|||+||+.++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 36788888777654431 10 135688999999999999999987654
No 412
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.85 E-value=0.027 Score=52.06 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+|+|+|++|+|||||++.++....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 347899999999999999999998653
No 413
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.84 E-value=0.027 Score=51.21 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
+..+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998764
No 414
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.84 E-value=0.046 Score=47.97 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 158 LNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 158 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
+++|.+.|.+ ++++++|..|+|||||...+....
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 5677777755 789999999999999999998654
No 415
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.80 E-value=0.18 Score=53.30 Aligned_cols=86 Identities=16% Similarity=0.160 Sum_probs=51.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCcc------------------
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY------------------ 230 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~------------------ 230 (535)
..+++.|.|++|+||||||.++......+ .=..++||+..+. ..++.+. +..++....
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE~--~~~l~~~-~~~~G~~~~~~~~~g~l~~~~~~~~~~ 95 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEES--PQDIIKN-ARSFGWDLQKLVDEGKLFILDASPDPE 95 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEecC--HHHHHHH-HHHcCCCHHHHhhcCceEEEecCchhc
Confidence 35789999999999999999987653221 0145788887643 3333333 333332211
Q ss_pred ------CCCchHHHHHHHHHHhcCCcEEEEEeCC
Q 009411 231 ------EESESGRARKLCERLKKEKKILVILDDI 258 (535)
Q Consensus 231 ------~~~~~~~~~~l~~~l~~~~~~LlVlDdv 258 (535)
..........+...+..+++-.+|+|.+
T Consensus 96 ~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl 129 (484)
T TIGR02655 96 GQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV 129 (484)
T ss_pred cccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh
Confidence 0111234455566666666778999954
No 416
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.80 E-value=0.046 Score=50.31 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=25.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.....+|+|+|++|+||||||+.+.....
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999998764
No 417
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.79 E-value=0.12 Score=52.78 Aligned_cols=88 Identities=27% Similarity=0.389 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC-CHHHHHHHHHHHhCCC-------ccCCCch-----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESES----- 235 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 235 (535)
....++|.|..|+|||||++.+.+... .+..+...+++.. ...++...+...-... ..+.+..
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 346799999999999999998886543 2344455666554 3444444443321111 1111111
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 236 -GRARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 236 -~~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
..+..+.+++. .++++|+++||+..
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 12334555553 47899999999853
No 418
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.78 E-value=0.022 Score=50.57 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 009411 173 IGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
|.|+|++|+||||+|+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999988763
No 419
>PRK15453 phosphoribulokinase; Provisional
Probab=94.77 E-value=0.21 Score=47.95 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+|+|.|.+|+||||+|+.+.+..+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999987654
No 420
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.75 E-value=0.028 Score=49.24 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 009411 173 IGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
|.|+|++|+||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999988764
No 421
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.73 E-value=0.029 Score=49.22 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=26.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKL 199 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~ 199 (535)
.++++|+|..|+|||||...+....+.+++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~ 31 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGY 31 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCc
Confidence 478999999999999999999998876543
No 422
>PRK13975 thymidylate kinase; Provisional
Probab=94.71 E-value=0.031 Score=51.25 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
..|+|.|+.|+||||+++.++.....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999988763
No 423
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.71 E-value=0.1 Score=48.06 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
+....|+|+|.+|+|||||...+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 345789999999999999999998764
No 424
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.70 E-value=0.029 Score=49.27 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
|++|+|+.|+|||||+..+....+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58899999999999999999987643
No 425
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.70 E-value=0.025 Score=48.59 Aligned_cols=24 Identities=33% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.|+|+|+.|+|||||++.+.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999997643
No 426
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.088 Score=50.49 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
+..+.|||++|.|||-+|+.++....+.
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 5678999999999999999999988765
No 427
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.68 E-value=0.028 Score=49.07 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998764
No 428
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.67 E-value=0.074 Score=51.93 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=40.6
Q ss_pred cccccccHHHHHH---HHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHHhccccCcc
Q 009411 148 YEAFESRMSTLND---VINALKNP--DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFD 201 (535)
Q Consensus 148 ~~~~~gR~~~~~~---l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~ 201 (535)
..+|+|..+..+. ++++..+. ..+.|.|+|++|.|||+||..+.+.....-+|.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 4678887665443 44555443 358899999999999999999999988765663
No 429
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.64 E-value=0.15 Score=49.00 Aligned_cols=90 Identities=17% Similarity=0.255 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC-CHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (535)
+..+++++|.+|+||||++..+......++ ..+.+++..... ....-+......++.+................+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 447999999999999999999887754322 234555543221 22233344444455443332233333444444542
Q ss_pred -CCcEEEEEeCCCC
Q 009411 248 -EKKILVILDDIWT 260 (535)
Q Consensus 248 -~~~~LlVlDdv~~ 260 (535)
.+.-++++|..-.
T Consensus 152 ~~~~D~ViIDt~Gr 165 (270)
T PRK06731 152 EARVDYILIDTAGK 165 (270)
T ss_pred cCCCCEEEEECCCC
Confidence 2346888898743
No 430
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.64 E-value=0.13 Score=49.49 Aligned_cols=59 Identities=25% Similarity=0.381 Sum_probs=38.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc-cccCc-------ceEEEEEeCCC-CCHHHHHHHHHHHhCCCcc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK-ADKLF-------DEVVYAEVSQR-PDVKKIQGQIADKLGLKFY 230 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~-~~~~f-------~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~ 230 (535)
++.|.|.||+|||||+..++-... .++-| ..+++|++... .++-+-++.+..+++.++.
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPa 158 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPA 158 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChH
Confidence 445679999999999988765432 22223 35788887643 3455556667777776643
No 431
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.63 E-value=0.93 Score=43.99 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=27.7
Q ss_pred HHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 159 NDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 159 ~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
+.|...+..+. .....++|+.|+||+++|..++...
T Consensus 7 ~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 7 EALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 45566666554 4577799999999999999988764
No 432
>PLN02200 adenylate kinase family protein
Probab=94.61 E-value=0.036 Score=52.39 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+|.|.|++|+||||+|+.++....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346889999999999999999987654
No 433
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.60 E-value=0.038 Score=48.05 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999999887665
No 434
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.59 E-value=0.11 Score=53.24 Aligned_cols=96 Identities=20% Similarity=0.330 Sum_probs=50.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC-CCHHHHHHHHHHHhCCC-------ccCCCc-----
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-PDVKKIQGQIADKLGLK-------FYEESE----- 234 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~-------~~~~~~----- 234 (535)
.....++|.|..|+|||||++.+..... .+..+...++.. ....++....+..-+.. ..+.+.
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~ 228 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIK 228 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHH
Confidence 3457899999999999999999887543 233323333332 22333333333332211 111111
Q ss_pred -hHHHHHHHHHHh-cCCcEEEEEeCCCCc-cccccc
Q 009411 235 -SGRARKLCERLK-KEKKILVILDDIWTN-LDLENV 267 (535)
Q Consensus 235 -~~~~~~l~~~l~-~~~~~LlVlDdv~~~-~~~~~~ 267 (535)
...+..+.+++. .++++||++||+..- ...+++
T Consensus 229 a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REi 264 (434)
T PRK07196 229 ATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREI 264 (434)
T ss_pred HHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHH
Confidence 112223333332 378999999998543 334444
No 435
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.57 E-value=0.083 Score=53.11 Aligned_cols=112 Identities=12% Similarity=0.086 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (535)
....|.|.|+.|+||||+...+.+.... +....++. +.++... ........+...............+...+. .
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~--~~~~~i~t-iEdp~E~--~~~~~~~~i~q~evg~~~~~~~~~l~~~lr-~ 194 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINK--NAAGHIIT-IEDPIEY--VHRNKRSLINQREVGLDTLSFANALRAALR-E 194 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCc--CCCCEEEE-EcCChhh--hccCccceEEccccCCCCcCHHHHHHHhhc-c
Confidence 3578999999999999999998876542 23333332 2222111 000000000000001111223444555565 3
Q ss_pred CcEEEEEeCCCCcccccccCCCCCCCCeEEEEeecCchh
Q 009411 249 KKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDV 287 (535)
Q Consensus 249 ~~~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTtR~~~v 287 (535)
.+=.|++|.+.+.+.+...... ...|..|+.|......
T Consensus 195 ~pd~i~vgEird~~~~~~~l~a-a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 195 DPDVILIGEMRDLETVELALTA-AETGHLVFGTLHTNSA 232 (343)
T ss_pred CCCEEEEeCCCCHHHHHHHHHH-HHcCCcEEEEEcCCCH
Confidence 6789999999877665442111 1345556666655443
No 436
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.57 E-value=0.11 Score=46.30 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=29.5
Q ss_pred cccHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 152 ESRMSTLNDVINALK---NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 152 ~gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+|....+.++.+.+. ... .-|.|+|..|+||+.+|+.+.+...
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~-~pVlI~GE~GtGK~~lA~~IH~~s~ 47 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSD-LPVLITGETGTGKELLARAIHNNSP 47 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTST-S-EEEECSTTSSHHHHHHHHHHCST
T ss_pred EeCCHHHHHHHHHHHHHhCCC-CCEEEEcCCCCcHHHHHHHHHHhhh
Confidence 455666666666554 333 4566999999999999999998543
No 437
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=94.55 E-value=0.13 Score=52.83 Aligned_cols=86 Identities=21% Similarity=0.276 Sum_probs=50.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH-HHHHHHHHHHhCCCc---------cCCCc---
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV-KKIQGQIADKLGLKF---------YEESE--- 234 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~i~~~l~~~~---------~~~~~--- 234 (535)
.....++|.|..|+|||||++.++.... -+.....-+++.... .+.... .++... .+.+.
T Consensus 155 ~~Gq~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGergrev~e~~~~---~l~~~l~~tvvV~atsddsp~~R 227 (434)
T PRK08472 155 GKGQKLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERGREIPEFIEK---NLGGDLENTVIVVATSDDSPLMR 227 (434)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccchhHHHHHHH---HhcCcccceEEEEECCCCCHHHh
Confidence 3446899999999999999999986543 234444555555432 222222 222210 00111
Q ss_pred ---hHHHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 235 ---SGRARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 235 ---~~~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
......+.+++. .++++||++||+..
T Consensus 228 ~~~~~~a~~iAEyFrd~G~~Vll~~DslTr 257 (434)
T PRK08472 228 KYGAFCAMSVAEYFKNQGLDVLFIMDSVTR 257 (434)
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEecccchH
Confidence 112344556653 47899999999954
No 438
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.54 E-value=0.03 Score=50.97 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.+++|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997654
No 439
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.52 E-value=0.038 Score=49.57 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...|.|+|+.|+||||+++.+.....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35689999999999999999998764
No 440
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=94.51 E-value=0.24 Score=51.54 Aligned_cols=88 Identities=17% Similarity=0.287 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHhccccCcce-EEEEEeCCCC-CHHHHHHHHHHHhCCCc-------cCCCchH--
Q 009411 169 DVHMIGAYGMAGVGKTMLV-KEVARQAKADKLFDE-VVYAEVSQRP-DVKKIQGQIADKLGLKF-------YEESESG-- 236 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa-~~~~~~~~~~~~f~~-~~wv~v~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~-- 236 (535)
..+-++|.|..|+|||||| ..+.++.. -+. ++++-+++.. ...++...+...-.... .+.+...
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q~~----~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~ 236 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQKG----RNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHhcC----CCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence 3467899999999999996 57777643 343 6888888875 44555555554322211 1111111
Q ss_pred ----HHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 237 ----RARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 237 ----~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
....+.+++. .++++|||+||+..
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~DdlTr 265 (497)
T TIGR03324 237 IAPYAATSIGEHFMEQGRDVLIVYDDLTQ 265 (497)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcChhH
Confidence 2334555553 47899999999854
No 441
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.49 E-value=0.03 Score=49.67 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 009411 173 IGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~ 193 (535)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 442
>PRK00698 tmk thymidylate kinase; Validated
Probab=94.47 E-value=0.1 Score=48.03 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
.+|+|.|+.|+||||+++.+.+.....
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999876543
No 443
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.47 E-value=0.12 Score=53.16 Aligned_cols=88 Identities=24% Similarity=0.373 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC-CHHHHHHHHHHHhCCC-------ccCCCch-----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESES----- 235 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 235 (535)
....++|.|..|+|||||++.++..... +....+-+++.. ...++...+...-+.. ..+.+..
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 4578999999999999999999865432 233334444443 3444444444332211 0111111
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 236 -GRARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 236 -~~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
.....+.+++. .++++|+++||+..
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 12334555553 47899999999854
No 444
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.46 E-value=0.35 Score=45.90 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=35.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 223 (535)
..++.|.|.+|+|||+++.+++.+...+. =..++|++... +..++...++.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHHH
Confidence 36899999999999999999887754331 23467777655 34555665543
No 445
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.45 E-value=0.26 Score=52.58 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=53.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCcc----------------CCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY----------------EES 233 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----------------~~~ 233 (535)
..++.|.|.+|+|||+|+.+++...... -..++|++.... ..++.+.+ ..++.+.. ...
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 347 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRR--GERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESYG 347 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccCC
Confidence 4688899999999999999998765433 356888877654 33443333 44443211 111
Q ss_pred chHHHHHHHHHHhcCCcEEEEEeCCC
Q 009411 234 ESGRARKLCERLKKEKKILVILDDIW 259 (535)
Q Consensus 234 ~~~~~~~l~~~l~~~~~~LlVlDdv~ 259 (535)
.......+.+.+...+.-++|+|.+.
T Consensus 348 ~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 348 LEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 12334455555544455689999974
No 446
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.43 E-value=0.28 Score=54.38 Aligned_cols=48 Identities=13% Similarity=0.306 Sum_probs=36.5
Q ss_pred cccccccHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 148 YEAFESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...++|+...+..+.+.+. .....-|.|+|..|+|||++|+.+++...
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 3467888888777766554 23335678999999999999999988654
No 447
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.43 E-value=0.18 Score=54.12 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
....++|+|+.|.|||||++.+..-.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999997654
No 448
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.43 E-value=0.04 Score=36.80 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=27.2
Q ss_pred cceEEEeccCcccccCCcc-CCCCCceeecccCC
Q 009411 503 ICTAISLHNCKIGELVEGF-GNLSSSLCRCFEDS 535 (535)
Q Consensus 503 ~~r~lsl~~~~~~~~~~~~-~~~~lr~L~~~~~~ 535 (535)
++++|++++|.+.++|..+ .|++|++|.+.++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 6789999999999999854 88999999998863
No 449
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.43 E-value=0.039 Score=44.81 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVA 191 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~ 191 (535)
...++|.|++|.|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4688999999999999999986
No 450
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.42 E-value=0.038 Score=51.19 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
..+.|.|+|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4678999999999999999999754
No 451
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.42 E-value=0.11 Score=47.46 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
+|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988753
No 452
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.41 E-value=0.034 Score=50.58 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEE
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAE 207 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~ 207 (535)
...|++|+|++|+|||||.+.+..-... -++.+|+.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~ 62 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVD 62 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEEC
Confidence 3479999999999999999998755432 35566664
No 453
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.41 E-value=0.24 Score=46.42 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=30.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR 211 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~ 211 (535)
..++.|.|.+|+|||+++.+++.....+ =..++|++....
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~ 55 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEER 55 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCC
Confidence 4789999999999999999988664322 245778877664
No 454
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.39 E-value=0.81 Score=48.54 Aligned_cols=129 Identities=21% Similarity=0.244 Sum_probs=69.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccc-c-----CcceEEEEEeCCC---------------C-C-HHHHHHHHHHHhC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD-K-----LFDEVVYAEVSQR---------------P-D-VKKIQGQIADKLG 226 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~-~-----~f~~~~wv~v~~~---------------~-~-~~~~~~~i~~~l~ 226 (535)
...|+|+|+.|+|||||.+.+....... + .--.+.|+.-... + . ...-.+..+..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 4678999999999999999996654321 1 1111223322110 0 1 1344455555555
Q ss_pred CCccCC-------CchHHHHHHHHHHhcCCcEEEEEeCCCCccccccc---CCCCC-CCCeEEEEeecCchhhhcccCCc
Q 009411 227 LKFYEE-------SESGRARKLCERLKKEKKILVILDDIWTNLDLENV---GIPFG-VRGCRVLMTARSQDVLSSKMDCQ 295 (535)
Q Consensus 227 ~~~~~~-------~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~---~~~~~-~~gs~ilvTtR~~~v~~~~~~~~ 295 (535)
.+.+.. +..+...-.+..+.-.++-+||||.--+.-+++.+ ...+. -+|+ ||+.|.++..... -+.
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gt-vl~VSHDr~Fl~~--va~ 504 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGT-VLLVSHDRYFLDR--VAT 504 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCe-EEEEeCCHHHHHh--hcc
Confidence 543321 23334444444444467899999987655443322 11111 2355 8888888866532 123
Q ss_pred ceEecC
Q 009411 296 NNFLIG 301 (535)
Q Consensus 296 ~~~~l~ 301 (535)
..+.+.
T Consensus 505 ~i~~~~ 510 (530)
T COG0488 505 RIWLVE 510 (530)
T ss_pred eEEEEc
Confidence 444444
No 455
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.38 E-value=0.15 Score=46.78 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVAR 192 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~ 192 (535)
..+|+|+|+.|+||||+|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 456
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.37 E-value=0.038 Score=52.34 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=23.4
Q ss_pred EEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC
Q 009411 175 AYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (535)
Q Consensus 175 I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~ 210 (535)
|+|++|+||||+++.+.+.....+ ..++-|++.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEcch
Confidence 689999999999999999876543 3355555543
No 457
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.36 E-value=0.2 Score=51.30 Aligned_cols=88 Identities=28% Similarity=0.404 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC-CHHHHHHHHHHHhCCCc-------cCCCch-----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLKF-------YEESES----- 235 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~----- 235 (535)
....++|.|..|+|||||++.++.... .+....+.+++.. ...++....+..-+... .+.+..
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 346799999999999999998886543 2233334444433 34445454433322111 111111
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 236 -GRARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 236 -~~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
..+..+.+++. .++++||++||+..
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 12334555553 47899999999854
No 458
>PRK14532 adenylate kinase; Provisional
Probab=94.36 E-value=0.037 Score=50.42 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 009411 173 IGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
|.|.|++|+||||+|+.++....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 77899999999999999987654
No 459
>PRK13948 shikimate kinase; Provisional
Probab=94.35 E-value=0.049 Score=49.22 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+.|.++|+.|+||||+++.+.+...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999998865
No 460
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.35 E-value=0.12 Score=47.21 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
..|+|.|..|+||||+++.+.+.....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999887653
No 461
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.32 E-value=0.075 Score=52.62 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=36.6
Q ss_pred cccccccHHHHHH---HHHHhcCCC--ceEEEEEcCCCCcHHHHHHHHHHHhccccCc
Q 009411 148 YEAFESRMSTLND---VINALKNPD--VHMIGAYGMAGVGKTMLVKEVARQAKADKLF 200 (535)
Q Consensus 148 ~~~~~gR~~~~~~---l~~~L~~~~--~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f 200 (535)
..+++|..+..+. +++++...+ .+.|.+.|++|.|||+||..+++....+-.|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 4588898765443 455555443 5889999999999999999999998765344
No 462
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.31 E-value=0.038 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 009411 173 IGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
|.|.|++|+||||+|+.++....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998754
No 463
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.31 E-value=0.4 Score=46.44 Aligned_cols=52 Identities=19% Similarity=0.143 Sum_probs=36.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
..++.|.|.+|+||||++.+++...... +=..++|++.... ..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEcccC--HHHHHHHHHHH
Confidence 3588899999999999999988775422 1245788887653 34555555443
No 464
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.31 E-value=0.063 Score=47.31 Aligned_cols=27 Identities=33% Similarity=0.535 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
+++.|+|..|+|||||+..+......+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999887644
No 465
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.31 E-value=0.034 Score=53.18 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
.|.++|++|+||||+|+.+......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987653
No 466
>PRK13946 shikimate kinase; Provisional
Probab=94.29 E-value=0.042 Score=49.87 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
.+.|.++|++|+||||+++.+.+....
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 357999999999999999999998753
No 467
>PRK04182 cytidylate kinase; Provisional
Probab=94.28 E-value=0.043 Score=49.39 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+|.|.|+.|+||||+|+.++....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998765
No 468
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.25 E-value=0.039 Score=51.17 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+++|+|.+|+|||||++.+.--.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 34689999999999999999997543
No 469
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.65 Score=50.11 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=34.6
Q ss_pred ccccHHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 151 FESRMSTLNDVINALKNP---------DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 151 ~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+++..+..+.+.+... ...++.++|.+|+||||+++.++....
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg 456 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELG 456 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhC
Confidence 345666666777777621 246888999999999999999998866
No 470
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.19 E-value=0.11 Score=52.59 Aligned_cols=47 Identities=30% Similarity=0.297 Sum_probs=36.0
Q ss_pred cccccHHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 150 AFESRMSTLNDVINALKN--------------PDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
.++|.++.++.+..++.+ ...+.|.++|++|+|||+||+.+......
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467888887777766632 01367899999999999999999987653
No 471
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.18 E-value=0.047 Score=48.70 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+|.|.|+.|+||||+|+.+.+...
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999988754
No 472
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=94.18 E-value=0.26 Score=51.04 Aligned_cols=88 Identities=17% Similarity=0.259 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCCcHHHHHH-HHHHHhccccCcceE-EEEEeCCCC-CHHHHHHHHHHHhCCC-------ccCCCchH--
Q 009411 169 DVHMIGAYGMAGVGKTMLVK-EVARQAKADKLFDEV-VYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESESG-- 236 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~-~~~~~~~~~~~f~~~-~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-- 236 (535)
..+-++|.|..|+|||+||. .+.++.. -+.+ +++-+++.. ...++...+...-... ..+.+...
T Consensus 140 rGQR~~I~g~~g~GKt~Lal~~I~~q~~----~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~ 215 (485)
T CHL00059 140 RGQRELIIGDRQTGKTAVATDTILNQKG----QNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQY 215 (485)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHhccc----CCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHH
Confidence 34678999999999999965 4555432 3434 788888765 4455555554432111 01111111
Q ss_pred ----HHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 237 ----RARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 237 ----~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
....+.+++. +++++|||+||+..
T Consensus 216 ~ap~~a~aiAEyfr~~G~~VLlv~DdlTr 244 (485)
T CHL00059 216 LAPYTGAALAEYFMYRGRHTLIIYDDLSK 244 (485)
T ss_pred HHHHHHhhHHHHHHHcCCCEEEEEcChhH
Confidence 1234555553 37899999999954
No 473
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.16 E-value=0.049 Score=43.09 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
++.+.|.+|+||||++..++.....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999988764
No 474
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.16 E-value=0.2 Score=51.42 Aligned_cols=89 Identities=26% Similarity=0.345 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC-CCHHHHHHHHHHHhCCCc-------cCCCchH----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-PDVKKIQGQIADKLGLKF-------YEESESG---- 236 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~---- 236 (535)
....++|.|..|+|||||+..++..... ..+++. -+++. ....+.+...+..-+... .+.+...
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~-~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVIS-LVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEE-eCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 3468899999999999999999876542 222332 33433 455566665554432211 1111111
Q ss_pred --HHHHHHHHHh-cCCcEEEEEeCCCCc
Q 009411 237 --RARKLCERLK-KEKKILVILDDIWTN 261 (535)
Q Consensus 237 --~~~~l~~~l~-~~~~~LlVlDdv~~~ 261 (535)
.+..+.+++. .+++.||++||+..-
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 1223444443 378999999998543
No 475
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.15 E-value=0.25 Score=47.62 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHH
Q 009411 158 LNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGR 237 (535)
Q Consensus 158 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 237 (535)
+.+|...|..++ +-..++|.||+||+||++.++.-..-+ ++-+.+++.++..+.-.++-.
T Consensus 20 i~ri~RvL~~~~-Gh~LLvG~~GsGr~sl~rLaa~i~~~~-----~~~i~~~~~y~~~~f~~dLk~-------------- 79 (268)
T PF12780_consen 20 IARISRVLSQPR-GHALLVGVGGSGRQSLARLAAFICGYE-----VFQIEITKGYSIKDFKEDLKK-------------- 79 (268)
T ss_dssp HHHHHHHHCSTT-EEEEEECTTTSCHHHHHHHHHHHTTEE-----EE-TTTSTTTHHHHHHHHHHH--------------
T ss_pred HHHHHHHHcCCC-CCeEEecCCCccHHHHHHHHHHHhccc-----eEEEEeeCCcCHHHHHHHHHH--------------
Confidence 455556666554 455699999999999999887654422 223334555554443222211
Q ss_pred HHHHHHHHhcCCcEEEEEeCCC
Q 009411 238 ARKLCERLKKEKKILVILDDIW 259 (535)
Q Consensus 238 ~~~l~~~l~~~~~~LlVlDdv~ 259 (535)
.+...-..+++..++++|-+
T Consensus 80 --~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 80 --ALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp --HHHHHHCS-S-EEEEEECCC
T ss_pred --HHHHHhccCCCeEEEecCcc
Confidence 11111123678888888854
No 476
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.13 E-value=0.044 Score=53.28 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeC
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVS 209 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~ 209 (535)
+.|+|.|-||+||||++..++.....++ + .++-++..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D 37 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCD 37 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCC
Confidence 4689999999999999999988766543 2 34444443
No 477
>PRK13236 nitrogenase reductase; Reviewed
Probab=94.12 E-value=0.054 Score=53.26 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=25.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
+++.++|++.|-||+||||++..++.-...
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~ 32 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAE 32 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHH
Confidence 567899999999999999999888776554
No 478
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.11 E-value=0.11 Score=47.72 Aligned_cols=107 Identities=20% Similarity=0.235 Sum_probs=53.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHh-
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK- 246 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~- 246 (535)
.+-++..|.|++|+||||++..+.......+ ..++++. .. ......+.+..+.... .+..+.....
T Consensus 16 ~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~a-pT----~~Aa~~L~~~~~~~a~------Ti~~~l~~~~~ 82 (196)
T PF13604_consen 16 SGDRVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLA-PT----NKAAKELREKTGIEAQ------TIHSFLYRIPN 82 (196)
T ss_dssp CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEE-SS----HHHHHHHHHHHTS-EE------EHHHHTTEECC
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEEC-Cc----HHHHHHHHHhhCcchh------hHHHHHhcCCc
Confidence 4457888999999999999999887766532 2233332 22 2233334444332110 0001100000
Q ss_pred --------cCCcEEEEEeCCCCcc--cccccCCCCCCCCeEEEEeecCchh
Q 009411 247 --------KEKKILVILDDIWTNL--DLENVGIPFGVRGCRVLMTARSQDV 287 (535)
Q Consensus 247 --------~~~~~LlVlDdv~~~~--~~~~~~~~~~~~gs~ilvTtR~~~v 287 (535)
..+.-+||+|++.-.+ .+..+.......|+|+|+.--....
T Consensus 83 ~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD~~QL 133 (196)
T PF13604_consen 83 GDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGDPNQL 133 (196)
T ss_dssp EECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-TTSH
T ss_pred ccccccccCCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECCcchh
Confidence 1234699999986543 3444422223457888877655543
No 479
>PRK13695 putative NTPase; Provisional
Probab=94.10 E-value=0.071 Score=47.86 Aligned_cols=25 Identities=48% Similarity=0.607 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
.|+|+|.+|+|||||++.+++....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999887543
No 480
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.08 E-value=0.05 Score=50.63 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
++|+|.|-||+||||++..++......
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~ 27 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEM 27 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHC
Confidence 578999999999999999888776543
No 481
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.05 E-value=0.18 Score=52.02 Aligned_cols=90 Identities=18% Similarity=0.255 Sum_probs=49.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCC-------CccCCCch-----
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGL-------KFYEESES----- 235 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~-------~~~~~~~~----- 235 (535)
.....++|+|..|+|||||++.+...... -.+++++.--...+..++..+.+..-+. ...+.+..
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~ 232 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNTSA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKG 232 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHH
Confidence 34578999999999999999988876542 1233433222222344443332211100 01111111
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 236 -GRARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 236 -~~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
..+..+.+++. .++++||++||+..
T Consensus 233 ~~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 233 AYTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 12334555553 47899999999853
No 482
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.05 E-value=0.052 Score=48.82 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+++|+|++|.|||||++.++....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998765
No 483
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.02 E-value=0.066 Score=51.73 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEe
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV 208 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v 208 (535)
++|+|+|.+|+|||||+..+......++ .+..+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G---~V~~IKh 36 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG---RVGTVKH 36 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC---CEEEEEE
Confidence 5899999999999999999999887654 2555554
No 484
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.00 E-value=0.07 Score=46.59 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEe
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV 208 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v 208 (535)
.-.++++|++|+||+||.+.+|..+... .+.+|+.-
T Consensus 37 GECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H 72 (235)
T COG4778 37 GECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRH 72 (235)
T ss_pred ccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEe
Confidence 3568899999999999999999887653 56777753
No 485
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.99 E-value=0.34 Score=49.66 Aligned_cols=88 Identities=27% Similarity=0.402 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC-CHHHHHHHHHHHhCCC-------ccCCCch-----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESES----- 235 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 235 (535)
....++|.|..|+|||||++.+.+.... +..+..-+++.. ...+...+.+..-+.. ..+.+..
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~~----~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~ 211 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAKA----DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKA 211 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 4578999999999999999988875442 222333445443 3444444433321111 0111111
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 236 -GRARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 236 -~~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
..+..+.+++. .++++||++||+..
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 212 AFTATAIAEYFRDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCcHH
Confidence 12334555553 47899999999854
No 486
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=93.99 E-value=0.28 Score=51.45 Aligned_cols=88 Identities=20% Similarity=0.267 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHhccccCcceE-EEEEeCCCC-CHHHHHHHHHHHhCCC-------ccCCCch---
Q 009411 169 DVHMIGAYGMAGVGKTMLV-KEVARQAKADKLFDEV-VYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESES--- 235 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa-~~~~~~~~~~~~f~~~-~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~--- 235 (535)
..+-++|.|..|+|||+|| ..+.++.. .+.+ +++-+++.. ...++...+...-... ..+.+..
T Consensus 160 rGQr~~I~g~~g~GKt~Lal~~i~~~~~----~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~ 235 (501)
T TIGR00962 160 RGQRELIIGDRQTGKTAVAIDTIINQKD----SDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQY 235 (501)
T ss_pred cCCEEEeecCCCCCccHHHHHHHHhhcC----CCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHH
Confidence 3467899999999999996 56666532 3553 888888865 3455555555432211 1111111
Q ss_pred ---HHHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 236 ---GRARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 236 ---~~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
-....+.+++. +++++|||+||+..
T Consensus 236 ~a~~~a~aiAEyfrd~G~~VLlv~Ddltr 264 (501)
T TIGR00962 236 LAPYTGCTMAEYFRDNGKHALIIYDDLSK 264 (501)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecchHH
Confidence 12334555554 36899999999954
No 487
>PRK06761 hypothetical protein; Provisional
Probab=93.97 E-value=0.052 Score=52.42 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
++|.|.|++|+||||+++.+++....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 57999999999999999999998764
No 488
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.95 E-value=0.1 Score=47.66 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=30.9
Q ss_pred cccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 148 YEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
+..++|.+..+..+.-...+ ..-+.+.|++|+|||++|+.+..-
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHh
Confidence 34567877777666554444 367889999999999999998754
No 489
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=93.91 E-value=0.14 Score=52.67 Aligned_cols=88 Identities=24% Similarity=0.359 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC-CHHHHHHHHHHHhCCC-------ccCCCchH----
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESESG---- 236 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 236 (535)
....++|.|..|+|||||.+.+++... .+.++...++... ...+....+...-... ..+.+...
T Consensus 174 ~Gqri~I~G~sG~GKTTLL~~Ia~~~~----~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~ 249 (455)
T PRK07960 174 RGQRMGLFAGSGVGKSVLLGMMARYTQ----ADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQG 249 (455)
T ss_pred CCcEEEEECCCCCCccHHHHHHhCCCC----CCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHHH
Confidence 457899999999999999998887543 2333333444332 3344443332211100 01111111
Q ss_pred --HHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 237 --RARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 237 --~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
.+..+.+++. .++++|+++||+..
T Consensus 250 ~~~a~tiAEyfrd~G~~Vll~~DslTr 276 (455)
T PRK07960 250 AAYATRIAEDFRDRGQHVLLIMDSLTR 276 (455)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecchhH
Confidence 2234455553 47899999999854
No 490
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.88 E-value=0.12 Score=43.11 Aligned_cols=28 Identities=36% Similarity=0.401 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
..+|.+.|.=|.||||+++.++.....+
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4799999999999999999999987654
No 491
>PRK13768 GTPase; Provisional
Probab=93.88 E-value=0.06 Score=51.60 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
.++.|.|+||+||||++..+......
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~ 28 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEE 28 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHh
Confidence 57899999999999999998877654
No 492
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=93.87 E-value=0.11 Score=50.38 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
++|+|.|-||+||||++..++.....+++ .++-|+.....+
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~--kVlliD~Dpq~n 42 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGK--KVMIVGCDPKAD 42 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCC--eEEEEEcCCCCC
Confidence 57888899999999999998887654322 355566554433
No 493
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.87 E-value=0.058 Score=48.21 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..|.|+|++|+||||+++.+.+...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578899999999999999998865
No 494
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.85 E-value=0.053 Score=50.38 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 009411 173 IGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
|.|.|++|+||||+|+.++....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67999999999999999987664
No 495
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.32 Score=46.25 Aligned_cols=92 Identities=26% Similarity=0.385 Sum_probs=57.3
Q ss_pred CcccccccHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 147 GYEAFESRMSTLNDVINALK----N---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
.+.++-|-+..+++|.+... . ..++-|.++|.+|.|||-||++|+|+-... |-.+
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--FlRv---------- 250 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--FLRV---------- 250 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--hhhh----------
Confidence 35566677888888777654 1 234567799999999999999999987632 4211
Q ss_pred HHHHHHHHHHH-hCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCC
Q 009411 214 VKKIQGQIADK-LGLKFYEESESGRARKLCERLKKEKKILVILDDIW 259 (535)
Q Consensus 214 ~~~~~~~i~~~-l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~ 259 (535)
+-.++++. +|. ......++++......+.++.+|.++
T Consensus 251 ---vGseLiQkylGd------GpklvRqlF~vA~e~apSIvFiDEId 288 (440)
T KOG0726|consen 251 ---VGSELIQKYLGD------GPKLVRELFRVAEEHAPSIVFIDEID 288 (440)
T ss_pred ---hhHHHHHHHhcc------chHHHHHHHHHHHhcCCceEEeehhh
Confidence 11222222 221 12345555555555567888888874
No 496
>PRK06820 type III secretion system ATPase; Validated
Probab=93.84 E-value=0.34 Score=49.87 Aligned_cols=85 Identities=21% Similarity=0.358 Sum_probs=49.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHh-CCC----------ccCCCchH-
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL-GLK----------FYEESESG- 236 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l-~~~----------~~~~~~~~- 236 (535)
....++|.|.+|+|||||++.++.... .+.+++.-++.... + ..++.+.. ... ..+.+...
T Consensus 162 ~Gqri~I~G~sG~GKStLl~~I~~~~~----~dv~V~~~iGergr--E-v~ef~e~~l~~~~~~rtvvv~atsd~p~~~r 234 (440)
T PRK06820 162 EGQRIGIFAAAGVGKSTLLGMLCADSA----ADVMVLALIGERGR--E-VREFLEQVLTPEARARTVVVVATSDRPALER 234 (440)
T ss_pred CCCEEEEECCCCCChHHHHHHHhccCC----CCEEEEEEEccChH--H-HHHHHHHhhccCCceeEEEEEeCCCCCHHHH
Confidence 346789999999999999998876543 34455566666532 2 22222222 111 01111111
Q ss_pred -----HHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 237 -----RARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 237 -----~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
.+..+.+++. .++++||++||+..
T Consensus 235 ~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr 264 (440)
T PRK06820 235 LKGLSTATTIAEYFRDRGKKVLLMADSLTR 264 (440)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEccchhH
Confidence 2234555553 47899999999854
No 497
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.83 E-value=0.055 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.+|.+.|++|+||||+|+.+....
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998775
No 498
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=93.80 E-value=0.059 Score=52.51 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
++|+|+|-||+||||++..++......
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~ 28 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAES 28 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhC
Confidence 578899999999999999988876543
No 499
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.75 E-value=0.14 Score=49.36 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=48.3
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHH
Q 009411 165 LKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCER 244 (535)
Q Consensus 165 L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~ 244 (535)
+......+|.|.|+.|+||||++..+.+..... -..++.+.-+....... + .++.. ...........+...
T Consensus 75 ~~~~~~GlilisG~tGSGKTT~l~all~~i~~~--~~~iitiEdp~E~~~~~----~-~q~~v--~~~~~~~~~~~l~~~ 145 (264)
T cd01129 75 LLEKPHGIILVTGPTGSGKTTTLYSALSELNTP--EKNIITVEDPVEYQIPG----I-NQVQV--NEKAGLTFARGLRAI 145 (264)
T ss_pred HHhcCCCEEEEECCCCCcHHHHHHHHHhhhCCC--CCeEEEECCCceecCCC----c-eEEEe--CCcCCcCHHHHHHHH
Confidence 334445689999999999999999887664321 11222221111111100 0 01111 111112233445555
Q ss_pred HhcCCcEEEEEeCCCCccccc
Q 009411 245 LKKEKKILVILDDIWTNLDLE 265 (535)
Q Consensus 245 l~~~~~~LlVlDdv~~~~~~~ 265 (535)
++. .+=.|+++++.+.+...
T Consensus 146 lR~-~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 146 LRQ-DPDIIMVGEIRDAETAE 165 (264)
T ss_pred hcc-CCCEEEeccCCCHHHHH
Confidence 553 57889999998877544
No 500
>PRK08356 hypothetical protein; Provisional
Probab=93.74 E-value=0.064 Score=49.20 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVA 191 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~ 191 (535)
..+|+|+|++|+||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999994
Done!