Query 009411
Match_columns 535
No_of_seqs 388 out of 3278
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 04:35:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.8E-49 6.2E-54 423.0 19.3 309 152-481 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 3.1E-40 1.1E-44 386.1 29.9 316 144-480 119-453 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.8E-40 6.1E-45 359.2 20.4 282 151-472 130-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 8.6E-38 3E-42 337.3 29.2 309 145-477 120-450 (591)
5 2qen_A Walker-type ATPase; unk 99.7 2.6E-16 9E-21 157.6 22.9 290 145-473 8-349 (350)
6 2fna_A Conserved hypothetical 99.7 1.6E-15 5.4E-20 152.3 22.1 288 146-472 10-356 (357)
7 1w5s_A Origin recognition comp 99.7 2.9E-15 9.8E-20 153.7 20.5 298 149-468 22-387 (412)
8 2qby_B CDC6 homolog 3, cell di 99.5 2.1E-12 7.2E-17 131.0 22.1 278 149-455 20-338 (384)
9 2qby_A CDC6 homolog 1, cell di 99.5 2.7E-12 9.1E-17 130.1 20.6 287 148-455 19-347 (386)
10 2v1u_A Cell division control p 99.4 1.3E-11 4.5E-16 125.0 21.6 283 149-455 19-350 (387)
11 1fnn_A CDC6P, cell division co 99.4 4.7E-11 1.6E-15 121.1 21.8 285 149-455 17-350 (389)
12 2chg_A Replication factor C sm 99.3 2E-11 7E-16 113.3 16.4 188 146-349 14-206 (226)
13 1njg_A DNA polymerase III subu 99.3 2.1E-11 7.1E-16 114.9 16.0 197 146-350 20-231 (250)
14 3qfl_A MLA10; coiled-coil, (CC 99.3 1.4E-12 4.8E-17 107.2 5.2 66 29-94 16-82 (115)
15 1sxj_B Activator 1 37 kDa subu 99.1 4.1E-10 1.4E-14 111.0 13.1 189 146-349 18-212 (323)
16 1iqp_A RFCS; clamp loader, ext 99.0 1.7E-09 5.7E-14 106.9 10.8 187 146-350 22-215 (327)
17 1hqc_A RUVB; extended AAA-ATPa 98.9 4.5E-08 1.5E-12 96.5 19.0 174 147-350 10-214 (324)
18 3te6_A Regulatory protein SIR3 98.9 6E-08 2E-12 94.3 17.3 168 150-317 21-212 (318)
19 2chq_A Replication factor C sm 98.8 4.2E-08 1.4E-12 96.3 14.4 185 146-348 14-205 (319)
20 1jbk_A CLPB protein; beta barr 98.8 1.9E-08 6.7E-13 90.6 9.0 153 147-312 20-194 (195)
21 1jr3_A DNA polymerase III subu 98.7 1E-07 3.4E-12 95.9 14.8 194 147-348 14-222 (373)
22 2qz4_A Paraplegin; AAA+, SPG7, 98.6 2.1E-06 7.2E-11 81.5 19.0 179 148-346 5-221 (262)
23 3pvs_A Replication-associated 98.6 9.3E-07 3.2E-11 90.6 16.6 179 146-348 23-216 (447)
24 3h4m_A Proteasome-activating n 98.6 8.9E-07 3E-11 85.4 15.1 179 146-346 14-230 (285)
25 3bos_A Putative DNA replicatio 98.6 1E-07 3.6E-12 89.3 8.1 173 148-348 27-218 (242)
26 1sxj_D Activator 1 41 kDa subu 98.6 3.9E-07 1.3E-11 90.8 12.7 195 146-347 34-235 (353)
27 1sxj_A Activator 1 95 kDa subu 98.6 3.9E-07 1.3E-11 95.7 12.8 191 146-348 36-254 (516)
28 3u61_B DNA polymerase accessor 98.5 1.3E-06 4.3E-11 86.0 12.9 177 146-344 23-213 (324)
29 3pfi_A Holliday junction ATP-d 98.4 2.1E-06 7.1E-11 85.0 14.1 174 146-348 26-228 (338)
30 1d2n_A N-ethylmaleimide-sensit 98.4 5.3E-06 1.8E-10 79.3 16.2 193 150-367 34-263 (272)
31 3b9p_A CG5977-PA, isoform A; A 98.4 1.2E-05 4E-10 78.0 18.7 181 146-347 18-233 (297)
32 1xwi_A SKD1 protein; VPS4B, AA 98.4 2.8E-05 9.5E-10 76.2 20.9 182 147-348 10-224 (322)
33 3d8b_A Fidgetin-like protein 1 98.4 7.5E-06 2.6E-10 81.6 16.8 181 147-348 82-296 (357)
34 3eie_A Vacuolar protein sortin 98.4 6.4E-06 2.2E-10 80.9 15.2 181 146-347 15-228 (322)
35 1sxj_E Activator 1 40 kDa subu 98.4 2E-06 6.8E-11 85.7 11.7 195 146-348 11-238 (354)
36 3uk6_A RUVB-like 2; hexameric 98.3 4.8E-06 1.6E-10 83.4 13.8 195 148-346 43-302 (368)
37 3pxg_A Negative regulator of g 98.3 2.9E-06 1E-10 87.7 12.2 151 147-317 178-339 (468)
38 2z4s_A Chromosomal replication 98.3 6.7E-06 2.3E-10 84.3 14.8 181 148-346 104-305 (440)
39 1sxj_C Activator 1 40 kDa subu 98.3 5.3E-06 1.8E-10 82.1 13.7 182 146-343 22-208 (340)
40 3cf0_A Transitional endoplasmi 98.3 1.3E-05 4.5E-10 77.8 16.2 172 147-342 13-223 (301)
41 3vfd_A Spastin; ATPase, microt 98.3 2.1E-05 7E-10 79.4 18.0 181 146-347 112-326 (389)
42 3syl_A Protein CBBX; photosynt 98.3 1.7E-06 5.7E-11 84.5 9.3 152 150-317 32-218 (309)
43 2zan_A Vacuolar protein sortin 98.3 2.3E-05 7.8E-10 80.5 18.0 183 146-348 131-346 (444)
44 2p65_A Hypothetical protein PF 98.2 1.8E-06 6.1E-11 77.1 7.7 49 147-195 20-68 (187)
45 4b4t_J 26S protease regulatory 98.2 2.3E-05 7.7E-10 78.1 16.2 172 147-340 146-354 (405)
46 2qp9_X Vacuolar protein sortin 98.2 1.4E-05 5E-10 79.4 14.6 182 146-348 48-262 (355)
47 1qvr_A CLPB protein; coiled co 98.2 5.9E-06 2E-10 92.1 12.2 157 147-316 168-345 (854)
48 1a5t_A Delta prime, HOLB; zinc 98.2 2.6E-05 9E-10 76.9 15.6 165 154-345 7-203 (334)
49 4b4t_L 26S protease subunit RP 98.2 3.6E-05 1.2E-09 77.8 16.2 170 147-340 179-387 (437)
50 1l8q_A Chromosomal replication 98.2 8.7E-06 3E-10 80.0 11.5 165 157-342 22-203 (324)
51 4b4t_H 26S protease regulatory 98.2 4E-05 1.4E-09 77.4 15.9 170 148-339 208-414 (467)
52 4b4t_M 26S protease regulatory 98.1 1.9E-05 6.5E-10 79.8 13.3 170 146-339 178-386 (434)
53 4b4t_I 26S protease regulatory 98.1 5.2E-05 1.8E-09 75.8 15.5 170 146-339 179-387 (437)
54 1r6b_X CLPA protein; AAA+, N-t 98.1 3.6E-05 1.2E-09 84.8 15.7 157 147-316 184-362 (758)
55 3pxi_A Negative regulator of g 98.1 1.6E-05 5.3E-10 87.6 12.0 153 147-317 178-339 (758)
56 1lv7_A FTSH; alpha/beta domain 98.0 0.00014 4.6E-09 68.8 16.1 178 146-345 9-223 (257)
57 4b4t_K 26S protease regulatory 98.0 8.6E-05 2.9E-09 75.0 14.4 169 147-339 170-378 (428)
58 3ec2_A DNA replication protein 97.9 9.7E-06 3.3E-10 72.2 5.8 115 154-285 19-143 (180)
59 2w58_A DNAI, primosome compone 97.9 2.2E-05 7.6E-10 71.2 7.8 112 156-285 36-159 (202)
60 2ce7_A Cell division protein F 97.8 0.00026 8.8E-09 72.7 15.2 198 147-366 14-257 (476)
61 3hu3_A Transitional endoplasmi 97.8 0.00023 8E-09 73.5 14.9 177 148-346 203-414 (489)
62 2gno_A DNA polymerase III, gam 97.8 0.00013 4.5E-09 70.7 12.1 141 154-316 2-152 (305)
63 1in4_A RUVB, holliday junction 97.8 0.0018 6.3E-08 63.5 19.8 173 146-347 22-223 (334)
64 2r62_A Cell division protease 97.7 2.1E-05 7.2E-10 74.9 5.1 150 148-317 10-197 (268)
65 1ofh_A ATP-dependent HSL prote 97.7 0.00013 4.6E-09 70.7 10.3 46 150-195 16-75 (310)
66 4fcw_A Chaperone protein CLPB; 97.6 0.00012 4.1E-09 71.2 7.7 105 150-261 18-131 (311)
67 3cf2_A TER ATPase, transitiona 97.5 0.00039 1.3E-08 75.6 11.5 169 148-340 203-407 (806)
68 3n70_A Transport activator; si 97.5 0.0001 3.4E-09 63.0 5.0 46 150-195 2-49 (145)
69 2c9o_A RUVB-like 1; hexameric 97.4 0.0015 5.2E-08 67.1 14.2 48 148-195 36-88 (456)
70 1ixz_A ATP-dependent metallopr 97.4 0.0017 5.8E-08 61.0 13.0 147 172-340 51-221 (254)
71 2x8a_A Nuclear valosin-contain 97.3 0.0039 1.3E-07 59.3 14.7 148 148-317 9-192 (274)
72 1iy2_A ATP-dependent metallopr 97.3 0.0028 9.7E-08 60.3 13.3 173 146-340 37-245 (278)
73 3m6a_A ATP-dependent protease 97.2 0.002 6.8E-08 67.7 11.8 155 150-316 82-266 (543)
74 1ojl_A Transcriptional regulat 97.2 0.0011 3.6E-08 64.3 8.9 46 150-195 3-50 (304)
75 2dhr_A FTSH; AAA+ protein, hex 97.1 0.004 1.4E-07 64.2 13.2 169 147-340 29-236 (499)
76 1n0w_A DNA repair protein RAD5 97.1 0.0041 1.4E-07 57.6 11.7 89 170-259 24-129 (243)
77 3io5_A Recombination and repai 97.1 0.0035 1.2E-07 60.1 11.1 84 172-260 30-122 (333)
78 3pxi_A Negative regulator of g 97.1 0.0012 4.1E-08 72.6 9.1 146 149-315 491-674 (758)
79 3co5_A Putative two-component 97.0 0.00021 7E-09 60.9 2.1 45 150-194 5-51 (143)
80 2qgz_A Helicase loader, putati 97.0 0.00058 2E-08 66.3 4.9 53 154-208 133-189 (308)
81 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.0012 4.1E-08 63.5 6.9 68 171-260 124-193 (331)
82 1r6b_X CLPA protein; AAA+, N-t 97.0 0.0017 5.9E-08 71.3 9.1 45 150-194 459-512 (758)
83 3dm5_A SRP54, signal recogniti 96.9 0.03 1E-06 56.5 16.9 29 169-197 99-127 (443)
84 2cvh_A DNA repair and recombin 96.9 0.0063 2.2E-07 55.4 11.1 44 170-218 20-63 (220)
85 1ypw_A Transitional endoplasmi 96.9 0.0033 1.1E-07 69.3 10.6 150 148-317 203-386 (806)
86 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.0023 7.9E-08 58.9 8.0 39 170-210 23-61 (235)
87 3hr8_A Protein RECA; alpha and 96.9 0.0046 1.6E-07 60.8 10.4 84 170-260 61-150 (356)
88 3kl4_A SRP54, signal recogniti 96.8 0.02 6.7E-07 57.8 14.9 29 169-197 96-124 (433)
89 1v5w_A DMC1, meiotic recombina 96.8 0.0073 2.5E-07 59.4 11.4 58 170-228 122-183 (343)
90 3t15_A Ribulose bisphosphate c 96.8 0.001 3.5E-08 64.0 4.8 26 170-195 36-61 (293)
91 2kjq_A DNAA-related protein; s 96.8 0.0016 5.6E-08 55.7 5.6 47 162-210 28-74 (149)
92 2i1q_A DNA repair and recombin 96.7 0.0077 2.6E-07 58.7 10.7 89 170-259 98-214 (322)
93 2z43_A DNA repair and recombin 96.7 0.0097 3.3E-07 58.0 11.0 89 170-259 107-213 (324)
94 1xp8_A RECA protein, recombina 96.6 0.0083 2.8E-07 59.4 10.5 83 170-259 74-162 (366)
95 2zr9_A Protein RECA, recombina 96.6 0.0084 2.9E-07 59.0 10.1 83 170-259 61-149 (349)
96 2xxa_A Signal recognition part 96.6 0.088 3E-06 53.3 17.6 89 169-258 99-192 (433)
97 1u94_A RECA protein, recombina 96.5 0.0092 3.1E-07 58.8 10.0 83 170-259 63-151 (356)
98 3lda_A DNA repair protein RAD5 96.5 0.0082 2.8E-07 60.1 9.6 88 170-258 178-282 (400)
99 1qvr_A CLPB protein; coiled co 96.5 0.0024 8.2E-08 71.0 6.1 46 150-195 559-613 (854)
100 2px0_A Flagellar biosynthesis 96.5 0.01 3.5E-07 57.0 9.6 86 169-258 104-191 (296)
101 2ehv_A Hypothetical protein PH 96.5 0.0016 5.5E-08 60.8 3.9 23 170-192 30-52 (251)
102 1rz3_A Hypothetical protein rb 96.3 0.004 1.4E-07 56.2 5.4 43 153-195 2-47 (201)
103 1j8m_F SRP54, signal recogniti 96.3 0.11 3.7E-06 49.7 15.6 88 170-259 98-190 (297)
104 3cf2_A TER ATPase, transitiona 96.3 0.0033 1.1E-07 68.4 5.3 170 148-339 476-682 (806)
105 4a74_A DNA repair and recombin 96.2 0.023 7.9E-07 51.9 10.2 90 170-260 25-136 (231)
106 2bjv_A PSP operon transcriptio 96.2 0.0036 1.2E-07 59.1 4.6 61 148-210 5-67 (265)
107 3ice_A Transcription terminati 96.2 0.0063 2.1E-07 59.9 6.3 97 160-260 163-272 (422)
108 3c8u_A Fructokinase; YP_612366 96.1 0.006 2.1E-07 55.3 5.2 40 156-195 6-47 (208)
109 1fx0_B ATP synthase beta chain 96.0 0.022 7.6E-07 57.9 9.4 97 162-259 156-276 (498)
110 3bh0_A DNAB-like replicative h 96.0 0.05 1.7E-06 52.6 11.7 51 170-224 68-118 (315)
111 1qhx_A CPT, protein (chloramph 96.0 0.0043 1.5E-07 54.5 3.7 25 171-195 4-28 (178)
112 3kb2_A SPBC2 prophage-derived 95.9 0.0046 1.6E-07 53.9 3.7 25 171-195 2-26 (173)
113 1jr3_D DNA polymerase III, del 95.9 0.049 1.7E-06 53.4 11.4 157 168-346 16-184 (343)
114 1sky_E F1-ATPase, F1-ATP synth 95.9 0.027 9.3E-07 57.1 9.4 88 171-259 152-255 (473)
115 3lw7_A Adenylate kinase relate 95.9 0.0049 1.7E-07 53.7 3.6 23 171-194 2-24 (179)
116 1g8p_A Magnesium-chelatase 38 95.9 0.0043 1.5E-07 61.1 3.5 49 147-195 22-70 (350)
117 2ck3_D ATP synthase subunit be 95.8 0.04 1.4E-06 55.7 10.4 98 161-259 143-263 (482)
118 3umf_A Adenylate kinase; rossm 95.8 0.024 8.1E-07 51.6 7.9 27 169-195 28-54 (217)
119 1pzn_A RAD51, DNA repair and r 95.8 0.03 1E-06 55.0 9.2 57 169-226 130-190 (349)
120 2r44_A Uncharacterized protein 95.8 0.014 4.9E-07 56.9 6.9 45 149-195 27-71 (331)
121 2dr3_A UPF0273 protein PH0284; 95.7 0.043 1.5E-06 50.7 9.7 39 170-210 23-61 (247)
122 3vaa_A Shikimate kinase, SK; s 95.7 0.0069 2.4E-07 54.4 3.9 27 169-195 24-50 (199)
123 4akg_A Glutathione S-transfera 95.7 0.21 7E-06 61.5 17.6 79 171-259 1268-1346(2695)
124 1ly1_A Polynucleotide kinase; 95.7 0.0067 2.3E-07 53.2 3.7 22 171-192 3-24 (181)
125 3trf_A Shikimate kinase, SK; a 95.6 0.0078 2.7E-07 53.2 3.8 26 170-195 5-30 (185)
126 1kag_A SKI, shikimate kinase I 95.6 0.0068 2.3E-07 52.9 3.4 25 171-195 5-29 (173)
127 1zp6_A Hypothetical protein AT 95.5 0.0078 2.7E-07 53.5 3.7 24 170-193 9-32 (191)
128 1kgd_A CASK, peripheral plasma 95.5 0.0078 2.7E-07 53.1 3.6 26 170-195 5-30 (180)
129 3uie_A Adenylyl-sulfate kinase 95.5 0.0098 3.4E-07 53.4 4.1 29 167-195 22-50 (200)
130 1nks_A Adenylate kinase; therm 95.5 0.0082 2.8E-07 53.3 3.6 25 171-195 2-26 (194)
131 3nbx_X ATPase RAVA; AAA+ ATPas 95.5 0.0085 2.9E-07 61.9 4.0 44 150-195 23-66 (500)
132 2rhm_A Putative kinase; P-loop 95.4 0.0099 3.4E-07 52.8 4.0 26 170-195 5-30 (193)
133 3t61_A Gluconokinase; PSI-biol 95.4 0.0078 2.7E-07 54.2 3.3 26 170-195 18-43 (202)
134 3iij_A Coilin-interacting nucl 95.4 0.009 3.1E-07 52.6 3.6 26 170-195 11-36 (180)
135 2yvu_A Probable adenylyl-sulfa 95.4 0.011 3.9E-07 52.3 4.3 28 169-196 12-39 (186)
136 4eun_A Thermoresistant glucoki 95.4 0.01 3.4E-07 53.4 3.9 27 168-194 27-53 (200)
137 3tqc_A Pantothenate kinase; bi 95.4 0.051 1.8E-06 52.5 9.1 27 169-195 91-117 (321)
138 1kht_A Adenylate kinase; phosp 95.4 0.0093 3.2E-07 52.9 3.6 25 171-195 4-28 (192)
139 2hf9_A Probable hydrogenase ni 95.3 0.014 4.9E-07 53.3 4.9 37 159-195 27-63 (226)
140 1vma_A Cell division protein F 95.3 0.066 2.3E-06 51.5 9.7 87 169-259 103-196 (306)
141 2j37_W Signal recognition part 95.3 0.16 5.4E-06 52.3 13.0 28 169-196 100-127 (504)
142 3hws_A ATP-dependent CLP prote 95.3 0.018 6.3E-07 57.0 5.8 45 151-195 17-76 (363)
143 3tau_A Guanylate kinase, GMP k 95.3 0.011 3.8E-07 53.5 3.9 27 169-195 7-33 (208)
144 2qor_A Guanylate kinase; phosp 95.3 0.0096 3.3E-07 53.7 3.4 27 169-195 11-37 (204)
145 1ex7_A Guanylate kinase; subst 95.3 0.0095 3.3E-07 52.8 3.3 25 171-195 2-26 (186)
146 1zuh_A Shikimate kinase; alpha 95.3 0.011 3.9E-07 51.3 3.8 27 169-195 6-32 (168)
147 1knq_A Gluconate kinase; ALFA/ 95.3 0.014 4.6E-07 51.1 4.3 25 170-194 8-32 (175)
148 1gvn_B Zeta; postsegregational 95.3 0.017 5.8E-07 55.2 5.3 26 169-194 32-57 (287)
149 2ze6_A Isopentenyl transferase 95.3 0.011 3.8E-07 55.3 3.9 25 171-195 2-26 (253)
150 1via_A Shikimate kinase; struc 95.2 0.01 3.5E-07 52.0 3.3 25 171-195 5-29 (175)
151 1ukz_A Uridylate kinase; trans 95.2 0.014 4.7E-07 52.5 4.3 27 169-195 14-40 (203)
152 1tev_A UMP-CMP kinase; ploop, 95.2 0.013 4.4E-07 52.1 3.9 26 170-195 3-28 (196)
153 2c95_A Adenylate kinase 1; tra 95.2 0.013 4.4E-07 52.2 3.9 26 170-195 9-34 (196)
154 2b8t_A Thymidine kinase; deoxy 95.2 0.012 4.1E-07 53.8 3.7 111 169-286 11-127 (223)
155 2iyv_A Shikimate kinase, SK; t 95.2 0.01 3.5E-07 52.4 3.2 25 171-195 3-27 (184)
156 3tr0_A Guanylate kinase, GMP k 95.2 0.013 4.5E-07 52.6 3.9 25 170-194 7-31 (205)
157 2jaq_A Deoxyguanosine kinase; 95.2 0.012 4.3E-07 52.6 3.8 24 172-195 2-25 (205)
158 1xjc_A MOBB protein homolog; s 95.2 0.014 4.8E-07 50.7 3.9 28 169-196 3-30 (169)
159 1y63_A LMAJ004144AAA protein; 95.1 0.014 4.9E-07 51.6 4.0 25 169-193 9-33 (184)
160 1odf_A YGR205W, hypothetical 3 95.1 0.026 8.9E-07 53.9 6.0 29 168-196 29-57 (290)
161 2wsm_A Hydrogenase expression/ 95.1 0.014 4.7E-07 53.2 3.9 40 156-195 16-55 (221)
162 2plr_A DTMP kinase, probable t 95.1 0.015 5.1E-07 52.5 4.1 26 171-196 5-30 (213)
163 2ga8_A Hypothetical 39.9 kDa p 95.1 0.025 8.6E-07 55.2 5.7 41 155-195 5-49 (359)
164 2j41_A Guanylate kinase; GMP, 95.1 0.015 5.1E-07 52.3 3.9 25 170-194 6-30 (207)
165 3cm0_A Adenylate kinase; ATP-b 95.0 0.016 5.4E-07 51.2 4.0 26 170-195 4-29 (186)
166 1e6c_A Shikimate kinase; phosp 95.0 0.013 4.3E-07 51.1 3.3 25 171-195 3-27 (173)
167 3l0o_A Transcription terminati 95.0 0.011 3.8E-07 58.0 3.1 53 159-212 163-217 (427)
168 3a00_A Guanylate kinase, GMP k 95.0 0.012 4.1E-07 52.2 3.2 25 171-195 2-26 (186)
169 2bwj_A Adenylate kinase 5; pho 95.0 0.014 4.9E-07 52.1 3.7 26 170-195 12-37 (199)
170 2bdt_A BH3686; alpha-beta prot 95.0 0.015 5E-07 51.7 3.7 22 171-192 3-24 (189)
171 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.015 5.3E-07 54.6 4.0 26 170-195 4-29 (260)
172 3cmu_A Protein RECA, recombina 95.0 0.042 1.4E-06 65.3 8.3 84 169-259 1426-1515(2050)
173 1uj2_A Uridine-cytidine kinase 95.0 0.016 5.5E-07 54.2 4.1 28 168-195 20-47 (252)
174 1um8_A ATP-dependent CLP prote 95.0 0.025 8.7E-07 56.3 5.8 26 170-195 72-97 (376)
175 1ypw_A Transitional endoplasmi 95.0 0.0035 1.2E-07 69.0 -0.7 150 148-317 476-662 (806)
176 1uf9_A TT1252 protein; P-loop, 95.0 0.016 5.5E-07 51.9 3.9 26 168-193 6-31 (203)
177 3asz_A Uridine kinase; cytidin 95.0 0.015 5.3E-07 52.5 3.8 27 169-195 5-31 (211)
178 3tlx_A Adenylate kinase 2; str 95.0 0.03 1E-06 52.0 5.8 28 168-195 27-54 (243)
179 2cdn_A Adenylate kinase; phosp 94.9 0.019 6.3E-07 51.6 4.2 26 170-195 20-45 (201)
180 3fwy_A Light-independent proto 94.9 0.017 5.8E-07 55.9 4.1 41 168-210 46-86 (314)
181 3ney_A 55 kDa erythrocyte memb 94.9 0.017 5.9E-07 51.6 3.9 27 169-195 18-44 (197)
182 2vli_A Antibiotic resistance p 94.9 0.011 3.7E-07 52.1 2.6 26 170-195 5-30 (183)
183 1qf9_A UMP/CMP kinase, protein 94.9 0.017 5.8E-07 51.2 3.8 26 170-195 6-31 (194)
184 1cke_A CK, MSSA, protein (cyti 94.9 0.017 5.6E-07 52.9 3.7 25 171-195 6-30 (227)
185 1aky_A Adenylate kinase; ATP:A 94.8 0.019 6.5E-07 52.3 4.0 26 170-195 4-29 (220)
186 2pt5_A Shikimate kinase, SK; a 94.8 0.019 6.4E-07 49.7 3.7 24 172-195 2-25 (168)
187 1lvg_A Guanylate kinase, GMP k 94.8 0.015 5.1E-07 52.2 3.1 26 170-195 4-29 (198)
188 2bbw_A Adenylate kinase 4, AK4 94.8 0.019 6.5E-07 53.4 4.0 26 170-195 27-52 (246)
189 1ye8_A Protein THEP1, hypothet 94.8 0.018 6.2E-07 50.7 3.6 24 172-195 2-25 (178)
190 2if2_A Dephospho-COA kinase; a 94.8 0.017 5.7E-07 51.9 3.4 22 171-192 2-23 (204)
191 2wwf_A Thymidilate kinase, put 94.7 0.019 6.3E-07 51.9 3.7 32 170-202 10-41 (212)
192 2pbr_A DTMP kinase, thymidylat 94.7 0.02 6.7E-07 50.9 3.7 24 172-195 2-25 (195)
193 1nn5_A Similar to deoxythymidy 94.7 0.021 7.3E-07 51.6 4.0 27 170-196 9-35 (215)
194 2qt1_A Nicotinamide riboside k 94.7 0.02 6.8E-07 51.6 3.7 25 170-194 21-45 (207)
195 1ls1_A Signal recognition part 94.7 0.13 4.3E-06 49.3 9.5 88 169-258 97-189 (295)
196 1zd8_A GTP:AMP phosphotransfer 94.6 0.02 6.8E-07 52.5 3.6 26 170-195 7-32 (227)
197 1zak_A Adenylate kinase; ATP:A 94.6 0.02 6.7E-07 52.3 3.6 26 170-195 5-30 (222)
198 3fb4_A Adenylate kinase; psych 94.6 0.021 7.2E-07 51.8 3.8 24 172-195 2-25 (216)
199 4gp7_A Metallophosphoesterase; 94.6 0.018 6.2E-07 50.3 3.1 22 170-191 9-30 (171)
200 2p5t_B PEZT; postsegregational 94.6 0.025 8.7E-07 52.8 4.3 27 169-195 31-57 (253)
201 3vr4_D V-type sodium ATPase su 94.5 0.078 2.7E-06 53.3 7.8 89 171-259 152-258 (465)
202 1jjv_A Dephospho-COA kinase; P 94.5 0.021 7.1E-07 51.4 3.4 22 171-192 3-24 (206)
203 3dl0_A Adenylate kinase; phosp 94.5 0.023 8E-07 51.5 3.7 24 172-195 2-25 (216)
204 2grj_A Dephospho-COA kinase; T 94.5 0.025 8.4E-07 50.5 3.7 26 169-194 11-36 (192)
205 3e70_C DPA, signal recognition 94.4 0.28 9.4E-06 47.6 11.4 58 168-227 127-185 (328)
206 2z0h_A DTMP kinase, thymidylat 94.4 0.025 8.4E-07 50.4 3.7 24 172-195 2-25 (197)
207 2v54_A DTMP kinase, thymidylat 94.4 0.025 8.4E-07 50.7 3.7 25 170-194 4-28 (204)
208 4e22_A Cytidylate kinase; P-lo 94.4 0.028 9.6E-07 52.5 4.1 27 169-195 26-52 (252)
209 1tue_A Replication protein E1; 94.4 0.033 1.1E-06 49.8 4.3 38 158-195 45-83 (212)
210 2zts_A Putative uncharacterize 94.4 0.064 2.2E-06 49.6 6.6 48 170-220 30-77 (251)
211 1znw_A Guanylate kinase, GMP k 94.4 0.027 9.1E-07 50.9 3.8 26 169-194 19-44 (207)
212 1z6g_A Guanylate kinase; struc 94.4 0.023 7.9E-07 51.8 3.4 25 170-194 23-47 (218)
213 2jeo_A Uridine-cytidine kinase 94.3 0.028 9.7E-07 52.2 4.0 26 169-194 24-49 (245)
214 3aez_A Pantothenate kinase; tr 94.3 0.027 9.4E-07 54.4 4.0 28 168-195 88-115 (312)
215 2ffh_A Protein (FFH); SRP54, s 94.3 0.14 4.8E-06 51.5 9.3 87 169-258 97-189 (425)
216 1gtv_A TMK, thymidylate kinase 94.3 0.014 4.8E-07 52.9 1.7 24 172-195 2-25 (214)
217 1s96_A Guanylate kinase, GMP k 94.3 0.028 9.7E-07 51.2 3.8 27 169-195 15-41 (219)
218 3gqb_B V-type ATP synthase bet 94.3 0.085 2.9E-06 53.1 7.4 90 170-259 147-261 (464)
219 3cmw_A Protein RECA, recombina 94.2 0.11 3.6E-06 61.1 9.2 84 170-260 732-821 (1706)
220 1m7g_A Adenylylsulfate kinase; 94.2 0.033 1.1E-06 50.4 4.1 28 168-195 23-50 (211)
221 3sr0_A Adenylate kinase; phosp 94.2 0.03 1E-06 50.5 3.8 24 172-195 2-25 (206)
222 2pez_A Bifunctional 3'-phospho 94.2 0.032 1.1E-06 48.9 3.9 26 170-195 5-30 (179)
223 1rj9_A FTSY, signal recognitio 94.2 0.031 1.1E-06 53.7 4.0 28 169-196 101-128 (304)
224 2f1r_A Molybdopterin-guanine d 94.1 0.023 7.7E-07 49.7 2.7 27 171-197 3-29 (171)
225 3vr4_A V-type sodium ATPase ca 94.1 0.15 5.3E-06 52.5 9.1 95 161-259 222-339 (600)
226 1htw_A HI0065; nucleotide-bind 94.1 0.036 1.2E-06 47.6 3.9 27 168-194 31-57 (158)
227 3p32_A Probable GTPase RV1496/ 94.1 0.067 2.3E-06 52.7 6.3 38 158-195 65-104 (355)
228 2q6t_A DNAB replication FORK h 94.0 0.28 9.7E-06 49.8 11.1 52 170-224 200-251 (444)
229 3end_A Light-independent proto 94.0 0.068 2.3E-06 51.4 6.1 43 167-211 38-80 (307)
230 1np6_A Molybdopterin-guanine d 94.0 0.058 2E-06 47.2 5.0 26 170-195 6-31 (174)
231 3k1j_A LON protease, ATP-depen 94.0 0.034 1.1E-06 59.2 4.2 47 147-195 39-85 (604)
232 2c61_A A-type ATP synthase non 94.0 0.052 1.8E-06 54.9 5.3 98 162-259 143-259 (469)
233 1vht_A Dephospho-COA kinase; s 93.9 0.039 1.3E-06 50.1 4.0 23 170-192 4-26 (218)
234 2r6a_A DNAB helicase, replicat 93.9 0.21 7.3E-06 50.9 9.9 50 170-222 203-252 (454)
235 3be4_A Adenylate kinase; malar 93.9 0.03 1E-06 50.9 3.1 25 171-195 6-30 (217)
236 3d3q_A TRNA delta(2)-isopenten 93.9 0.037 1.3E-06 53.8 3.9 25 171-195 8-32 (340)
237 3ake_A Cytidylate kinase; CMP 93.9 0.037 1.3E-06 49.6 3.8 24 172-195 4-27 (208)
238 1ak2_A Adenylate kinase isoenz 93.9 0.042 1.4E-06 50.6 4.1 26 170-195 16-41 (233)
239 2f6r_A COA synthase, bifunctio 93.9 0.037 1.3E-06 52.6 3.8 24 169-192 74-97 (281)
240 3mfy_A V-type ATP synthase alp 93.8 0.11 3.7E-06 53.4 7.3 96 161-260 217-335 (588)
241 3upu_A ATP-dependent DNA helic 93.8 0.1 3.5E-06 53.4 7.3 44 153-197 29-72 (459)
242 3r20_A Cytidylate kinase; stru 93.8 0.039 1.3E-06 50.7 3.7 26 170-195 9-34 (233)
243 3nwj_A ATSK2; P loop, shikimat 93.8 0.034 1.2E-06 51.8 3.4 26 170-195 48-73 (250)
244 1g41_A Heat shock protein HSLU 93.8 0.043 1.5E-06 55.5 4.3 47 150-196 16-76 (444)
245 2xb4_A Adenylate kinase; ATP-b 93.8 0.039 1.3E-06 50.4 3.7 24 172-195 2-25 (223)
246 3cmu_A Protein RECA, recombina 93.8 0.15 5.1E-06 60.7 9.3 83 170-259 383-471 (2050)
247 1e4v_A Adenylate kinase; trans 93.8 0.038 1.3E-06 50.1 3.6 24 172-195 2-25 (214)
248 2i3b_A HCR-ntpase, human cance 93.7 0.035 1.2E-06 49.3 3.2 25 171-195 2-26 (189)
249 3crm_A TRNA delta(2)-isopenten 93.7 0.041 1.4E-06 53.1 3.8 25 171-195 6-30 (323)
250 2yhs_A FTSY, cell division pro 93.7 0.32 1.1E-05 49.6 10.5 42 169-213 292-333 (503)
251 4a1f_A DNAB helicase, replicat 93.7 0.18 6.1E-06 49.0 8.4 50 171-224 47-96 (338)
252 1g5t_A COB(I)alamin adenosyltr 93.6 0.036 1.2E-06 49.2 3.0 113 171-286 29-164 (196)
253 3lnc_A Guanylate kinase, GMP k 93.6 0.028 9.6E-07 51.7 2.4 25 170-194 27-52 (231)
254 1q57_A DNA primase/helicase; d 93.6 0.2 6.9E-06 51.8 9.2 52 170-224 242-293 (503)
255 3hjn_A DTMP kinase, thymidylat 93.6 0.2 6.7E-06 44.7 7.9 50 172-223 2-51 (197)
256 4eaq_A DTMP kinase, thymidylat 93.5 0.092 3.1E-06 48.2 5.8 28 169-196 25-52 (229)
257 3b9q_A Chloroplast SRP recepto 93.5 0.048 1.6E-06 52.4 4.0 27 169-195 99-125 (302)
258 1sq5_A Pantothenate kinase; P- 93.5 0.047 1.6E-06 52.7 3.9 28 168-195 78-105 (308)
259 3lv8_A DTMP kinase, thymidylat 93.5 0.12 4.1E-06 47.5 6.5 37 170-207 27-63 (236)
260 3exa_A TRNA delta(2)-isopenten 93.5 0.048 1.7E-06 52.2 3.8 26 170-195 3-28 (322)
261 1yrb_A ATP(GTP)binding protein 93.4 0.059 2E-06 50.4 4.4 27 169-195 13-39 (262)
262 3vkg_A Dynein heavy chain, cyt 93.4 0.73 2.5E-05 57.4 14.7 231 173-452 1307-1575(3245)
263 1cr0_A DNA primase/helicase; R 93.3 0.16 5.4E-06 48.5 7.4 52 170-224 35-86 (296)
264 2onk_A Molybdate/tungstate ABC 93.3 0.049 1.7E-06 50.4 3.6 24 171-194 25-48 (240)
265 3foz_A TRNA delta(2)-isopenten 93.3 0.062 2.1E-06 51.3 4.3 26 170-195 10-35 (316)
266 4tmk_A Protein (thymidylate ki 93.3 0.15 5E-06 46.2 6.6 52 171-223 4-55 (213)
267 3bgw_A DNAB-like replicative h 93.3 0.32 1.1E-05 49.3 9.9 50 170-223 197-246 (444)
268 3a8t_A Adenylate isopentenyltr 93.3 0.045 1.6E-06 53.0 3.3 26 170-195 40-65 (339)
269 1ltq_A Polynucleotide kinase; 93.2 0.051 1.7E-06 52.1 3.7 23 171-193 3-25 (301)
270 3ld9_A DTMP kinase, thymidylat 93.2 0.13 4.6E-06 46.8 6.2 56 167-223 18-74 (223)
271 3tif_A Uncharacterized ABC tra 93.2 0.047 1.6E-06 50.4 3.2 26 169-194 30-55 (235)
272 1a7j_A Phosphoribulokinase; tr 93.1 0.029 9.9E-07 53.6 1.7 27 169-195 4-30 (290)
273 2ck3_A ATP synthase subunit al 93.1 0.25 8.4E-06 50.4 8.6 99 161-259 152-272 (510)
274 1zu4_A FTSY; GTPase, signal re 93.0 0.069 2.4E-06 51.7 4.2 28 169-196 104-131 (320)
275 3zvl_A Bifunctional polynucleo 92.9 0.05 1.7E-06 54.9 3.2 28 167-194 255-282 (416)
276 2og2_A Putative signal recogni 92.9 0.066 2.2E-06 52.6 4.0 27 169-195 156-182 (359)
277 2pcj_A ABC transporter, lipopr 92.9 0.047 1.6E-06 50.0 2.7 25 170-194 30-54 (224)
278 1oix_A RAS-related protein RAB 92.9 0.061 2.1E-06 47.6 3.4 25 170-194 29-53 (191)
279 2cbz_A Multidrug resistance-as 92.9 0.056 1.9E-06 49.9 3.2 26 169-194 30-55 (237)
280 2qe7_A ATP synthase subunit al 92.8 0.25 8.4E-06 50.3 8.1 95 161-259 152-264 (502)
281 3io3_A DEHA2D07832P; chaperone 92.8 0.15 5.1E-06 49.9 6.3 48 165-214 13-62 (348)
282 2eyu_A Twitching motility prot 92.8 0.076 2.6E-06 49.8 4.0 110 168-287 23-135 (261)
283 3oaa_A ATP synthase subunit al 92.8 0.68 2.3E-05 47.0 11.1 94 162-259 153-264 (513)
284 3b85_A Phosphate starvation-in 92.8 0.045 1.5E-06 49.5 2.3 24 170-193 22-45 (208)
285 2dyk_A GTP-binding protein; GT 92.7 0.077 2.6E-06 45.0 3.7 24 171-194 2-25 (161)
286 1b0u_A Histidine permease; ABC 92.7 0.06 2E-06 50.6 3.2 26 169-194 31-56 (262)
287 4edh_A DTMP kinase, thymidylat 92.7 0.22 7.5E-06 45.0 6.9 28 170-197 6-33 (213)
288 2qmh_A HPR kinase/phosphorylas 92.7 0.052 1.8E-06 48.2 2.6 25 170-194 34-58 (205)
289 1u0j_A DNA replication protein 92.7 0.13 4.5E-06 48.0 5.4 37 158-194 90-128 (267)
290 3cmw_A Protein RECA, recombina 92.7 0.27 9.3E-06 57.7 9.2 83 170-259 1431-1519(1706)
291 2v9p_A Replication protein E1; 92.7 0.073 2.5E-06 51.0 3.8 27 168-194 124-150 (305)
292 2f9l_A RAB11B, member RAS onco 92.7 0.066 2.3E-06 47.7 3.3 24 171-194 6-29 (199)
293 1q3t_A Cytidylate kinase; nucl 92.6 0.086 2.9E-06 48.5 4.2 27 169-195 15-41 (236)
294 4gzl_A RAS-related C3 botulinu 92.6 0.074 2.5E-06 47.6 3.6 36 159-194 19-54 (204)
295 2d2e_A SUFC protein; ABC-ATPas 92.6 0.068 2.3E-06 49.8 3.4 24 170-193 29-52 (250)
296 3gfo_A Cobalt import ATP-bindi 92.6 0.057 1.9E-06 51.1 2.8 24 170-193 34-57 (275)
297 2r8r_A Sensor protein; KDPD, P 92.5 0.096 3.3E-06 47.6 4.2 37 172-210 8-44 (228)
298 2zu0_C Probable ATP-dependent 92.5 0.077 2.6E-06 50.0 3.7 25 169-193 45-69 (267)
299 2wji_A Ferrous iron transport 92.5 0.079 2.7E-06 45.5 3.5 23 171-193 4-26 (165)
300 1mv5_A LMRA, multidrug resista 92.5 0.069 2.3E-06 49.5 3.3 25 169-193 27-51 (243)
301 2olj_A Amino acid ABC transpor 92.5 0.066 2.3E-06 50.3 3.2 26 169-194 49-74 (263)
302 2ged_A SR-beta, signal recogni 92.5 0.1 3.5E-06 46.0 4.3 26 169-194 47-72 (193)
303 1g8f_A Sulfate adenylyltransfe 92.5 0.12 4.2E-06 53.2 5.4 45 152-196 375-421 (511)
304 1nlf_A Regulatory protein REPA 92.4 0.067 2.3E-06 50.7 3.2 25 170-194 30-54 (279)
305 3iqw_A Tail-anchored protein t 92.4 0.17 5.9E-06 49.2 6.2 48 166-215 12-59 (334)
306 2ocp_A DGK, deoxyguanosine kin 92.4 0.086 2.9E-06 48.7 3.9 26 170-195 2-27 (241)
307 2zej_A Dardarin, leucine-rich 92.4 0.059 2E-06 47.3 2.6 22 172-193 4-25 (184)
308 1sgw_A Putative ABC transporte 92.4 0.055 1.9E-06 49.1 2.4 25 170-194 35-59 (214)
309 1ji0_A ABC transporter; ATP bi 92.4 0.062 2.1E-06 49.7 2.9 25 170-194 32-56 (240)
310 4g1u_C Hemin import ATP-bindin 92.4 0.062 2.1E-06 50.6 2.8 25 170-194 37-61 (266)
311 1g6h_A High-affinity branched- 92.4 0.063 2.2E-06 50.3 2.9 25 170-194 33-57 (257)
312 2pze_A Cystic fibrosis transme 92.3 0.064 2.2E-06 49.2 2.9 25 170-194 34-58 (229)
313 1svm_A Large T antigen; AAA+ f 92.3 0.085 2.9E-06 52.3 3.9 27 168-194 167-193 (377)
314 1vpl_A ABC transporter, ATP-bi 92.3 0.072 2.5E-06 49.8 3.2 26 169-194 40-65 (256)
315 2r9v_A ATP synthase subunit al 92.3 0.28 9.7E-06 49.9 7.7 95 161-259 165-277 (515)
316 2ghi_A Transport protein; mult 92.3 0.073 2.5E-06 49.9 3.2 26 169-194 45-70 (260)
317 2ff7_A Alpha-hemolysin translo 92.3 0.067 2.3E-06 49.8 2.9 25 170-194 35-59 (247)
318 2ixe_A Antigen peptide transpo 92.2 0.075 2.6E-06 50.2 3.2 26 169-194 44-69 (271)
319 2orw_A Thymidine kinase; TMTK, 92.2 0.097 3.3E-06 46.2 3.7 26 171-196 4-29 (184)
320 1cp2_A CP2, nitrogenase iron p 92.2 0.095 3.2E-06 49.2 3.9 38 171-210 2-39 (269)
321 2afh_E Nitrogenase iron protei 92.1 0.097 3.3E-06 49.8 4.0 39 170-210 2-40 (289)
322 2ce2_X GTPase HRAS; signaling 92.1 0.083 2.8E-06 44.9 3.2 23 172-194 5-27 (166)
323 1z2a_A RAS-related protein RAB 92.1 0.087 3E-06 45.0 3.3 24 171-194 6-29 (168)
324 3eph_A TRNA isopentenyltransfe 92.1 0.088 3E-06 52.3 3.6 25 171-195 3-27 (409)
325 1tf7_A KAIC; homohexamer, hexa 92.1 0.23 8E-06 51.7 7.1 26 170-195 281-306 (525)
326 2yz2_A Putative ABC transporte 92.0 0.081 2.8E-06 49.8 3.2 25 169-193 32-56 (266)
327 2qi9_C Vitamin B12 import ATP- 92.0 0.075 2.6E-06 49.4 2.8 25 170-194 26-50 (249)
328 3f9v_A Minichromosome maintena 91.9 0.048 1.6E-06 57.7 1.6 23 172-194 329-351 (595)
329 3kjh_A CO dehydrogenase/acetyl 91.8 0.18 6.2E-06 46.5 5.4 41 173-215 3-43 (254)
330 2nq2_C Hypothetical ABC transp 91.8 0.079 2.7E-06 49.4 2.8 25 170-194 31-55 (253)
331 2ihy_A ABC transporter, ATP-bi 91.8 0.08 2.7E-06 50.2 2.8 25 170-194 47-71 (279)
332 2v3c_C SRP54, signal recogniti 91.8 0.059 2E-06 54.5 2.0 27 170-196 99-125 (432)
333 3sop_A Neuronal-specific septi 91.7 0.096 3.3E-06 49.4 3.4 24 172-195 4-27 (270)
334 3con_A GTPase NRAS; structural 91.7 0.1 3.4E-06 45.9 3.3 24 171-194 22-45 (190)
335 2wjg_A FEOB, ferrous iron tran 91.7 0.11 3.9E-06 45.4 3.7 23 171-193 8-30 (188)
336 1nrj_B SR-beta, signal recogni 91.7 0.12 4.2E-06 46.6 3.9 26 169-194 11-36 (218)
337 1r8s_A ADP-ribosylation factor 91.7 0.11 3.8E-06 44.2 3.5 22 173-194 3-24 (164)
338 3gqb_A V-type ATP synthase alp 91.7 0.15 5E-06 52.4 4.7 48 161-212 211-259 (578)
339 1u8z_A RAS-related protein RAL 91.6 0.11 3.6E-06 44.3 3.3 24 171-194 5-28 (168)
340 2www_A Methylmalonic aciduria 91.6 0.2 6.9E-06 49.1 5.6 27 169-195 73-99 (349)
341 2lkc_A Translation initiation 91.6 0.11 3.9E-06 44.8 3.5 25 169-193 7-31 (178)
342 1zj6_A ADP-ribosylation factor 91.6 0.17 5.8E-06 44.3 4.7 34 159-193 6-39 (187)
343 1kao_A RAP2A; GTP-binding prot 91.6 0.11 3.7E-06 44.2 3.3 23 172-194 5-27 (167)
344 2nzj_A GTP-binding protein REM 91.6 0.1 3.4E-06 45.0 3.1 23 171-193 5-27 (175)
345 1c1y_A RAS-related protein RAP 91.6 0.11 3.8E-06 44.3 3.3 23 172-194 5-27 (167)
346 1fzq_A ADP-ribosylation factor 91.5 0.15 5.1E-06 44.5 4.2 26 168-193 14-39 (181)
347 2vp4_A Deoxynucleoside kinase; 91.5 0.081 2.8E-06 48.5 2.5 25 169-193 19-43 (230)
348 1moz_A ARL1, ADP-ribosylation 91.5 0.11 3.7E-06 45.2 3.3 33 160-192 7-40 (183)
349 1z08_A RAS-related protein RAB 91.4 0.11 3.9E-06 44.4 3.3 24 171-194 7-30 (170)
350 1z0j_A RAB-22, RAS-related pro 91.4 0.11 3.6E-06 44.5 3.1 24 171-194 7-30 (170)
351 1ek0_A Protein (GTP-binding pr 91.4 0.12 4E-06 44.2 3.3 23 172-194 5-27 (170)
352 3ihw_A Centg3; RAS, centaurin, 91.4 0.11 3.9E-06 45.5 3.3 24 171-194 21-44 (184)
353 1m7b_A RND3/RHOE small GTP-bin 91.3 0.11 3.8E-06 45.4 3.2 24 171-194 8-31 (184)
354 3gmt_A Adenylate kinase; ssgci 91.3 0.12 4.2E-06 47.1 3.5 25 171-195 9-33 (230)
355 3q85_A GTP-binding protein REM 91.3 0.11 3.9E-06 44.4 3.2 22 171-192 3-24 (169)
356 2axn_A 6-phosphofructo-2-kinas 91.2 0.14 4.7E-06 53.2 4.2 27 169-195 34-60 (520)
357 2gj8_A MNME, tRNA modification 91.2 0.11 3.8E-06 45.0 3.0 23 171-193 5-27 (172)
358 1tq4_A IIGP1, interferon-induc 91.2 0.13 4.6E-06 51.4 3.9 25 169-193 68-92 (413)
359 2pjz_A Hypothetical protein ST 91.2 0.1 3.4E-06 49.0 2.8 24 170-193 30-53 (263)
360 1ky3_A GTP-binding protein YPT 91.2 0.12 4.2E-06 44.7 3.3 26 169-194 7-32 (182)
361 2h92_A Cytidylate kinase; ross 91.2 0.12 4.1E-06 46.8 3.3 25 171-195 4-28 (219)
362 1nij_A Hypothetical protein YJ 91.2 0.1 3.6E-06 50.5 3.0 26 169-194 3-28 (318)
363 3cr8_A Sulfate adenylyltranfer 91.2 0.18 6E-06 52.7 4.9 27 169-195 368-394 (552)
364 1wms_A RAB-9, RAB9, RAS-relate 91.1 0.13 4.3E-06 44.5 3.3 24 171-194 8-31 (177)
365 2erx_A GTP-binding protein DI- 91.1 0.11 3.6E-06 44.6 2.8 23 171-193 4-26 (172)
366 3q72_A GTP-binding protein RAD 91.1 0.11 3.8E-06 44.3 2.8 21 172-192 4-24 (166)
367 1g16_A RAS-related protein SEC 91.1 0.13 4.3E-06 44.0 3.2 24 171-194 4-27 (170)
368 3jvv_A Twitching mobility prot 91.0 0.15 5.2E-06 50.0 4.1 111 170-287 123-233 (356)
369 3c5c_A RAS-like protein 12; GD 91.0 0.13 4.4E-06 45.2 3.3 25 170-194 21-45 (187)
370 1r2q_A RAS-related protein RAB 91.0 0.13 4.5E-06 43.8 3.3 23 171-193 7-29 (170)
371 3v9p_A DTMP kinase, thymidylat 91.0 0.28 9.4E-06 44.8 5.5 27 170-196 25-51 (227)
372 3fvq_A Fe(3+) IONS import ATP- 91.0 0.13 4.5E-06 50.4 3.6 25 170-194 30-54 (359)
373 2cjw_A GTP-binding protein GEM 91.0 0.14 4.8E-06 45.3 3.5 23 171-193 7-29 (192)
374 3nh6_A ATP-binding cassette SU 91.0 0.09 3.1E-06 50.5 2.3 26 169-194 79-104 (306)
375 1svi_A GTP-binding protein YSX 90.9 0.13 4.5E-06 45.3 3.3 25 169-193 22-46 (195)
376 1m2o_B GTP-binding protein SAR 90.9 0.13 4.4E-06 45.4 3.2 24 170-193 23-46 (190)
377 2hxs_A RAB-26, RAS-related pro 90.9 0.12 4.2E-06 44.6 3.0 23 171-193 7-29 (178)
378 2bbs_A Cystic fibrosis transme 90.9 0.12 4.1E-06 49.2 3.1 26 169-194 63-88 (290)
379 1p5z_B DCK, deoxycytidine kina 90.9 0.073 2.5E-06 49.9 1.6 26 169-194 23-48 (263)
380 3t1o_A Gliding protein MGLA; G 90.9 0.13 4.5E-06 45.2 3.2 24 171-194 15-38 (198)
381 3cwq_A Para family chromosome 90.9 0.35 1.2E-05 43.4 6.1 41 172-215 2-43 (209)
382 3tqf_A HPR(Ser) kinase; transf 90.9 0.16 5.3E-06 44.0 3.4 24 170-193 16-39 (181)
383 1upt_A ARL1, ADP-ribosylation 90.8 0.14 4.8E-06 43.8 3.3 24 171-194 8-31 (171)
384 1f6b_A SAR1; gtpases, N-termin 90.8 0.19 6.6E-06 44.6 4.3 24 169-192 24-47 (198)
385 3tui_C Methionine import ATP-b 90.8 0.15 5E-06 50.2 3.7 26 169-194 53-78 (366)
386 1z0f_A RAB14, member RAS oncog 90.8 0.14 4.9E-06 44.1 3.3 25 170-194 15-39 (179)
387 3kta_A Chromosome segregation 90.8 0.14 4.8E-06 44.8 3.2 24 171-194 27-50 (182)
388 3kkq_A RAS-related protein M-R 90.8 0.13 4.5E-06 44.7 3.1 25 170-194 18-42 (183)
389 3geh_A MNME, tRNA modification 90.7 1.7 5.7E-05 44.2 11.6 88 65-194 161-248 (462)
390 2fn4_A P23, RAS-related protei 90.7 0.18 6.1E-06 43.6 3.9 25 170-194 9-33 (181)
391 2qm8_A GTPase/ATPase; G protei 90.7 0.16 5.4E-06 49.6 3.8 29 167-195 52-80 (337)
392 3bc1_A RAS-related protein RAB 90.7 0.15 5E-06 44.7 3.3 24 171-194 12-35 (195)
393 3fdi_A Uncharacterized protein 90.7 0.16 5.6E-06 45.4 3.7 26 171-196 7-32 (201)
394 4dsu_A GTPase KRAS, isoform 2B 90.7 0.15 5E-06 44.6 3.3 24 171-194 5-28 (189)
395 2bme_A RAB4A, RAS-related prot 90.6 0.13 4.5E-06 44.8 3.0 25 170-194 10-34 (186)
396 2iwr_A Centaurin gamma 1; ANK 90.6 0.11 3.7E-06 45.0 2.4 24 171-194 8-31 (178)
397 2ewv_A Twitching motility prot 90.6 0.21 7.2E-06 49.4 4.7 28 168-195 134-161 (372)
398 1z47_A CYSA, putative ABC-tran 90.6 0.14 4.9E-06 50.1 3.4 25 170-194 41-65 (355)
399 2yyz_A Sugar ABC transporter, 90.6 0.16 5.5E-06 49.9 3.7 26 169-194 28-53 (359)
400 2oil_A CATX-8, RAS-related pro 90.6 0.15 5.2E-06 44.9 3.3 25 170-194 25-49 (193)
401 3tmk_A Thymidylate kinase; pho 90.6 0.38 1.3E-05 43.5 6.0 27 170-196 5-31 (216)
402 2y8e_A RAB-protein 6, GH09086P 90.6 0.14 4.6E-06 44.3 3.0 24 171-194 15-38 (179)
403 2yv5_A YJEQ protein; hydrolase 90.6 0.24 8.3E-06 47.4 5.0 33 158-194 156-188 (302)
404 3pqc_A Probable GTP-binding pr 90.6 0.15 5.2E-06 44.7 3.3 26 169-194 22-47 (195)
405 1mh1_A RAC1; GTP-binding, GTPa 90.5 0.16 5.3E-06 44.3 3.3 23 172-194 7-29 (186)
406 3dz8_A RAS-related protein RAB 90.5 0.16 5.3E-06 44.8 3.3 24 171-194 24-47 (191)
407 2it1_A 362AA long hypothetical 90.5 0.16 5.6E-06 49.9 3.7 26 169-194 28-53 (362)
408 3bwd_D RAC-like GTP-binding pr 90.4 0.16 5.5E-06 44.0 3.3 23 171-193 9-31 (182)
409 3cbq_A GTP-binding protein REM 90.4 0.12 4E-06 45.9 2.5 22 170-191 23-44 (195)
410 3rlf_A Maltose/maltodextrin im 90.4 0.17 5.7E-06 50.1 3.7 25 170-194 29-53 (381)
411 1fx0_A ATP synthase alpha chai 90.4 0.34 1.2E-05 49.4 6.0 86 170-259 163-265 (507)
412 1m8p_A Sulfate adenylyltransfe 90.4 0.27 9.3E-06 51.6 5.5 27 169-195 395-421 (573)
413 3t5g_A GTP-binding protein RHE 90.4 0.16 5.4E-06 44.1 3.2 25 170-194 6-30 (181)
414 2a9k_A RAS-related protein RAL 90.4 0.16 5.6E-06 44.1 3.3 25 170-194 18-42 (187)
415 1lw7_A Transcriptional regulat 90.3 0.15 5.2E-06 50.3 3.4 26 170-195 170-195 (365)
416 2cxx_A Probable GTP-binding pr 90.3 0.14 4.9E-06 44.7 2.9 22 172-193 3-24 (190)
417 2efe_B Small GTP-binding prote 90.3 0.16 5.6E-06 43.9 3.3 24 171-194 13-36 (181)
418 2g6b_A RAS-related protein RAB 90.3 0.17 5.7E-06 43.8 3.3 24 171-194 11-34 (180)
419 2atv_A RERG, RAS-like estrogen 90.3 0.16 5.6E-06 44.8 3.3 26 169-194 27-52 (196)
420 1v43_A Sugar-binding transport 90.3 0.17 6E-06 49.9 3.7 25 169-193 36-60 (372)
421 2bov_A RAla, RAS-related prote 90.2 0.15 5.3E-06 45.2 3.1 25 170-194 14-38 (206)
422 3tw8_B RAS-related protein RAB 90.2 0.15 5.2E-06 44.1 3.0 24 170-193 9-32 (181)
423 4hlc_A DTMP kinase, thymidylat 90.2 0.54 1.8E-05 42.1 6.6 25 171-195 3-27 (205)
424 2ew1_A RAS-related protein RAB 90.1 0.17 5.7E-06 45.3 3.2 25 170-194 26-50 (201)
425 1p9r_A General secretion pathw 90.1 0.28 9.7E-06 49.2 5.2 29 167-195 164-192 (418)
426 1zd9_A ADP-ribosylation factor 90.1 0.18 6E-06 44.3 3.3 24 171-194 23-46 (188)
427 1gwn_A RHO-related GTP-binding 90.1 0.17 5.7E-06 45.4 3.2 25 170-194 28-52 (205)
428 1g29_1 MALK, maltose transport 90.1 0.16 5.6E-06 50.1 3.4 25 170-194 29-53 (372)
429 1vg8_A RAS-related protein RAB 90.1 0.17 5.9E-06 45.0 3.3 25 170-194 8-32 (207)
430 3oes_A GTPase rhebl1; small GT 90.0 0.17 5.8E-06 45.0 3.2 26 169-194 23-48 (201)
431 3clv_A RAB5 protein, putative; 90.0 0.18 6E-06 44.6 3.3 25 170-194 7-31 (208)
432 3reg_A RHO-like small GTPase; 90.0 0.18 6.1E-06 44.4 3.3 25 170-194 23-47 (194)
433 2fh5_B SR-beta, signal recogni 90.0 0.18 6.1E-06 45.3 3.3 25 170-194 7-31 (214)
434 2gf9_A RAS-related protein RAB 90.0 0.17 5.7E-06 44.4 3.1 25 170-194 22-46 (189)
435 3ug7_A Arsenical pump-driving 90.0 0.41 1.4E-05 46.9 6.2 41 168-210 24-64 (349)
436 4dkx_A RAS-related protein RAB 90.0 0.17 5.7E-06 45.9 3.1 22 172-193 15-36 (216)
437 4dzz_A Plasmid partitioning pr 90.0 0.34 1.2E-05 43.1 5.2 42 171-214 2-44 (206)
438 2p67_A LAO/AO transport system 89.9 0.2 6.8E-06 49.0 3.8 29 167-195 53-81 (341)
439 1bif_A 6-phosphofructo-2-kinas 89.9 0.2 6.8E-06 51.3 4.0 27 169-195 38-64 (469)
440 2fg5_A RAB-22B, RAS-related pr 89.9 0.18 6E-06 44.5 3.2 24 171-194 24-47 (192)
441 2a5j_A RAS-related protein RAB 89.9 0.19 6.4E-06 44.2 3.3 24 171-194 22-45 (191)
442 3d31_A Sulfate/molybdate ABC t 89.9 0.15 5E-06 49.9 2.8 25 170-194 26-50 (348)
443 2g3y_A GTP-binding protein GEM 89.8 0.18 6.1E-06 45.6 3.1 23 170-192 37-59 (211)
444 3fkq_A NTRC-like two-domain pr 89.8 0.38 1.3E-05 47.6 5.8 44 168-213 141-185 (373)
445 3tkl_A RAS-related protein RAB 89.8 0.19 6.6E-06 44.1 3.3 25 170-194 16-40 (196)
446 1pui_A ENGB, probable GTP-bind 89.7 0.13 4.3E-06 46.1 2.1 26 168-193 24-49 (210)
447 1ihu_A Arsenical pump-driving 89.7 0.42 1.4E-05 50.5 6.4 40 168-209 6-45 (589)
448 1z06_A RAS-related protein RAB 89.7 0.2 6.7E-06 44.0 3.3 25 170-194 20-44 (189)
449 2b6h_A ADP-ribosylation factor 89.7 0.16 5.5E-06 44.8 2.7 27 167-193 26-52 (192)
450 3llm_A ATP-dependent RNA helic 89.7 0.57 1.9E-05 42.9 6.6 22 171-192 77-98 (235)
451 2gf0_A GTP-binding protein DI- 89.7 0.19 6.4E-06 44.4 3.2 24 170-193 8-31 (199)
452 2p5s_A RAS and EF-hand domain 89.6 0.2 6.8E-06 44.4 3.3 26 169-194 27-52 (199)
453 2gks_A Bifunctional SAT/APS ki 89.6 0.39 1.3E-05 50.1 5.9 44 153-196 353-398 (546)
454 1x3s_A RAS-related protein RAB 89.6 0.21 7E-06 43.9 3.3 24 171-194 16-39 (195)
455 2woj_A ATPase GET3; tail-ancho 89.5 0.58 2E-05 45.9 6.8 47 168-216 16-64 (354)
456 1ksh_A ARF-like protein 2; sma 89.5 0.23 7.8E-06 43.3 3.5 27 168-194 16-42 (186)
457 1zbd_A Rabphilin-3A; G protein 89.5 0.17 6E-06 44.9 2.8 24 171-194 9-32 (203)
458 2qnr_A Septin-2, protein NEDD5 89.4 0.16 5.4E-06 48.7 2.6 21 172-192 20-40 (301)
459 2obl_A ESCN; ATPase, hydrolase 89.4 0.22 7.4E-06 48.8 3.6 27 169-195 70-96 (347)
460 2bcg_Y Protein YP2, GTP-bindin 89.3 0.21 7E-06 44.5 3.2 24 171-194 9-32 (206)
461 2woo_A ATPase GET3; tail-ancho 89.3 0.51 1.7E-05 45.8 6.2 44 167-212 16-59 (329)
462 1x6v_B Bifunctional 3'-phospho 89.3 0.24 8.1E-06 52.3 4.0 27 169-195 51-77 (630)
463 1oxx_K GLCV, glucose, ABC tran 89.3 0.14 4.8E-06 50.3 2.1 25 169-193 30-54 (353)
464 3zq6_A Putative arsenical pump 89.3 0.53 1.8E-05 45.5 6.3 45 170-216 14-58 (324)
465 3llu_A RAS-related GTP-binding 89.3 0.17 5.7E-06 44.8 2.5 24 170-193 20-43 (196)
466 1ega_A Protein (GTP-binding pr 89.3 0.22 7.4E-06 47.7 3.5 25 169-193 7-31 (301)
467 3gd7_A Fusion complex of cysti 89.3 0.22 7.6E-06 49.4 3.6 25 169-193 46-70 (390)
468 2qu8_A Putative nucleolar GTP- 89.2 0.26 8.7E-06 44.9 3.8 25 169-193 28-52 (228)
469 1u0l_A Probable GTPase ENGC; p 89.2 0.34 1.2E-05 46.4 4.8 34 158-194 160-193 (301)
470 2gza_A Type IV secretion syste 89.2 0.18 6E-06 49.8 2.8 26 170-195 175-200 (361)
471 4b3f_X DNA-binding protein smu 89.2 0.55 1.9E-05 50.2 6.9 61 157-222 194-254 (646)
472 3ch4_B Pmkase, phosphomevalona 89.1 0.31 1.1E-05 43.4 4.0 26 169-194 10-35 (202)
473 4bas_A ADP-ribosylation factor 89.1 0.24 8.3E-06 43.6 3.5 25 169-193 16-40 (199)
474 2q3h_A RAS homolog gene family 89.1 0.22 7.5E-06 44.1 3.2 24 170-193 20-43 (201)
475 2fv8_A H6, RHO-related GTP-bin 89.0 0.22 7.6E-06 44.5 3.2 24 171-194 26-49 (207)
476 2atx_A Small GTP binding prote 89.0 0.23 7.7E-06 43.7 3.2 23 171-193 19-41 (194)
477 3lxx_A GTPase IMAP family memb 89.0 0.26 8.8E-06 45.3 3.6 26 169-194 28-53 (239)
478 3cph_A RAS-related protein SEC 89.0 0.24 8.1E-06 44.3 3.3 25 170-194 20-44 (213)
479 2j0v_A RAC-like GTP-binding pr 88.9 0.23 7.8E-06 44.5 3.2 24 171-194 10-33 (212)
480 2fu5_C RAS-related protein RAB 88.9 0.14 4.7E-06 44.6 1.6 23 171-193 9-31 (183)
481 3q3j_B RHO-related GTP-binding 88.9 0.24 8.3E-06 44.6 3.3 24 171-194 28-51 (214)
482 2hup_A RAS-related protein RAB 88.9 0.23 8E-06 44.1 3.2 25 170-194 29-53 (201)
483 2o52_A RAS-related protein RAB 88.9 0.22 7.6E-06 44.2 3.0 24 170-193 25-48 (200)
484 2rcn_A Probable GTPase ENGC; Y 88.9 0.23 8E-06 48.6 3.4 24 171-194 216-239 (358)
485 2gco_A H9, RHO-related GTP-bin 88.8 0.24 8.2E-06 44.0 3.2 24 171-194 26-49 (201)
486 2h17_A ADP-ribosylation factor 88.7 0.17 6E-06 44.0 2.2 23 171-193 22-44 (181)
487 2j1l_A RHO-related GTP-binding 88.7 0.23 7.8E-06 44.7 3.0 24 170-193 34-57 (214)
488 2il1_A RAB12; G-protein, GDP, 88.5 0.24 8.2E-06 43.6 3.0 23 171-193 27-49 (192)
489 1c9k_A COBU, adenosylcobinamid 88.4 0.24 8.1E-06 43.3 2.8 34 173-212 2-35 (180)
490 2npi_A Protein CLP1; CLP1-PCF1 88.4 0.22 7.6E-06 50.7 3.0 26 169-194 137-162 (460)
491 3k53_A Ferrous iron transport 88.4 0.28 9.5E-06 46.1 3.5 24 170-193 3-26 (271)
492 3hdt_A Putative kinase; struct 88.4 0.32 1.1E-05 44.3 3.7 45 170-228 14-58 (223)
493 2aka_B Dynamin-1; fusion prote 88.2 0.52 1.8E-05 44.7 5.4 26 169-194 25-50 (299)
494 3iev_A GTP-binding protein ERA 88.1 0.29 9.9E-06 47.0 3.5 25 169-193 9-33 (308)
495 1byi_A Dethiobiotin synthase; 88.1 0.34 1.2E-05 43.8 3.8 27 171-197 2-29 (224)
496 1f2t_A RAD50 ABC-ATPase; DNA d 88.0 0.34 1.2E-05 40.9 3.5 25 170-194 23-47 (149)
497 2fz4_A DNA repair protein RAD2 87.9 1.6 5.6E-05 39.8 8.4 38 154-194 95-132 (237)
498 2pt7_A CAG-ALFA; ATPase, prote 87.9 0.19 6.5E-06 48.9 2.0 105 171-286 172-276 (330)
499 1h65_A Chloroplast outer envel 87.9 0.57 1.9E-05 43.9 5.3 38 157-194 24-63 (270)
500 2qag_B Septin-6, protein NEDD5 87.8 0.24 8.1E-06 49.7 2.7 21 173-193 45-65 (427)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.8e-49 Score=422.97 Aligned_cols=309 Identities=15% Similarity=0.139 Sum_probs=241.0
Q ss_pred cccHHHHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHH--HhccccCcceEEEEEeCCCC--CHHHHHHHHHHH
Q 009411 152 ESRMSTLNDVINALKNP---DVHMIGAYGMAGVGKTMLVKEVAR--QAKADKLFDEVVYAEVSQRP--DVKKIQGQIADK 224 (535)
Q Consensus 152 ~gR~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~~~~--~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~ 224 (535)
+||+.++++|.++|... +.++|+|+||||+||||||+++|+ +.+.+.+|++++||++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999733 679999999999999999999999 56777899999999999986 789999999999
Q ss_pred hCCCcc--C------CCchHHHHHHHHHHhcCCcEEEEEeCCCCcccccccCCCCCCCCeEEEEeecCchhhhcccCCcc
Q 009411 225 LGLKFY--E------ESESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDVLSSKMDCQN 296 (535)
Q Consensus 225 l~~~~~--~------~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTtR~~~v~~~~~~~~~ 296 (535)
++.... . .+.......+.+.+..++||||||||||+.+++ .+ + ..+||+||||||+..++........
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~--~-~~~gs~ilvTTR~~~v~~~~~~~~~ 286 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW--A-QELRLRCLVTTRDVEISNAASQTCE 286 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH--H-HHTTCEEEEEESBGGGGGGCCSCEE
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc--c-ccCCCEEEEEcCCHHHHHHcCCCCe
Confidence 986532 1 112234567777777434999999999998765 22 1 1269999999999998753222446
Q ss_pred eEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhhcCCHHHHHHHHHH-hcCCCCCCCCc
Q 009411 297 NFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEWKSALRE-LTRPSSGSFSG 375 (535)
Q Consensus 297 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~~~~~~~w~~~l~~-l~~~~~~~~~~ 375 (535)
.|+|++|+.++||+||.+.++.....+++.+++++|+++|+|+||||+++|+.|+.++ ++|...+.. +....
T Consensus 287 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~------ 359 (549)
T 2a5y_B 287 FIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRG------ 359 (549)
T ss_dssp EEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHC------
T ss_pred EEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhccc------
Confidence 7999999999999999999876554578888999999999999999999999998764 333333332 21100
Q ss_pred chHHHHHHHHhhhcCCCCCchHHHHH-----------HhhccCCCCCCCHHHHHHHhhhc--ccccCCC---cHHHHHHH
Q 009411 376 VAAEAYKTSELSYNHLEGEELKSTFL-----------LCCLMDFIENPSVLYLLSYGMGL--GLFKGTH---TMEEARDR 439 (535)
Q Consensus 376 ~~~~v~~~l~~sy~~L~~~~~k~c~~-----------~ls~fp~~~~i~~~~Li~~W~a~--g~i~~~~---~~~~~~~~ 439 (535)
...+..++.+||+.||++ +|.||+ |||+||+++.|+ +++|+|+ ||+.... +.+++.
T Consensus 360 -~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~-- 431 (549)
T 2a5y_B 360 -LVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA-- 431 (549)
T ss_dssp -SSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH--
T ss_pred -HHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH--
Confidence 234688899999999998 999999 999999999988 8899999 9997532 233332
Q ss_pred HHHHHHHHHHccccccCC--CCCcEEecHHHHHHHHHHhccccc
Q 009411 440 ALTLVDKLKNSYLLLDDP--ESETFSEHDVVRHVAMSIASRDQH 481 (535)
Q Consensus 440 ~~~~l~~L~~~sll~~~~--~~~~~~mH~lv~~~a~~~~~~e~~ 481 (535)
. ++++|+++||++... ...+|+|||+||+||++++.+++.
T Consensus 432 -~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 432 -D-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp -H-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred -H-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 2 799999999998642 346899999999999999987653
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.1e-40 Score=386.07 Aligned_cols=316 Identities=19% Similarity=0.243 Sum_probs=248.7
Q ss_pred ccCCcccccccHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhcc-cc-CcceEEEEEeCCCCC--HHHH
Q 009411 144 SIKGYEAFESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKA-DK-LFDEVVYAEVSQRPD--VKKI 217 (535)
Q Consensus 144 ~~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~-~~-~f~~~~wv~v~~~~~--~~~~ 217 (535)
.|+....|+||++++++|.++|. +++.++|+|+||||+||||||+++|++... .. +|++++|+++++..+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 34556779999999999999995 466899999999999999999999988543 23 457899999998643 4445
Q ss_pred HHHHHHHhCCCccC-----CCchHHHHHHHHHHhc-CCcEEEEEeCCCCcccccccCCCCCCCCeEEEEeecCchhhhcc
Q 009411 218 QGQIADKLGLKFYE-----ESESGRARKLCERLKK-EKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDVLSSK 291 (535)
Q Consensus 218 ~~~i~~~l~~~~~~-----~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTtR~~~v~~~~ 291 (535)
+..++..+...... .........+...+.. ++|+||||||||+..+|..+ ++||+||||||++.++...
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-----~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-----DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-----CSSCEEEEEESSTTTTTTC
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-----cCCCEEEEEcCCHHHHHhh
Confidence 66777777654321 1223344455555542 24999999999999888776 4689999999999887444
Q ss_pred cCCcceEecCC-CCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC
Q 009411 292 MDCQNNFLIGV-LNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEWKSALRELTRPSS 370 (535)
Q Consensus 292 ~~~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~~~ 370 (535)
.+....+.+++ |+.+++++||...++... +++.+++++|+++|+|+||||+++|++|+.++ ..|..+++.+.....
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~--~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMKK--EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQF 350 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSCS--TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCC
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCCCh--hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhh
Confidence 56677899996 999999999999886432 33445799999999999999999999999765 468888888865543
Q ss_pred CCC----CcchHHHHHHHHhhhcCCCCCchHHHHHHhhccCCCCCCCHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHH
Q 009411 371 GSF----SGVAAEAYKTSELSYNHLEGEELKSTFLLCCLMDFIENPSVLYLLSYGMGLGLFKGTHTMEEARDRALTLVDK 446 (535)
Q Consensus 371 ~~~----~~~~~~v~~~l~~sy~~L~~~~~k~c~~~ls~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~l~~ 446 (535)
... ......+..+|.+||+.||++ +|.||+|||+||+++.|+.+.++.+|.+++ ..+.+++++
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~ 417 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDILQE 417 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHHHH
T ss_pred hhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHHHHH
Confidence 321 222467999999999999998 999999999999999999999999996542 234567999
Q ss_pred HHHccccccCCC--CCcEEecHHHHHHHHHHhcccc
Q 009411 447 LKNSYLLLDDPE--SETFSEHDVVRHVAMSIASRDQ 480 (535)
Q Consensus 447 L~~~sll~~~~~--~~~~~mH~lv~~~a~~~~~~e~ 480 (535)
|+++||++.... ..+|+||++||+|++.++.++.
T Consensus 418 L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 418 FVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp HHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred HHhccceEEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence 999999985432 2369999999999999987663
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.8e-40 Score=359.19 Aligned_cols=282 Identities=17% Similarity=0.195 Sum_probs=224.0
Q ss_pred ccccHHHHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcce-EEEEEeCCCCCHHHHHHHHHHHhCCC
Q 009411 151 FESRMSTLNDVINALKN-PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDE-VVYAEVSQRPDVKKIQGQIADKLGLK 228 (535)
Q Consensus 151 ~~gR~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i~~~l~~~ 228 (535)
.+||+.++++|.++|.+ ++.++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|+..++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999974 56799999999999999999999998777778976 99999999999888888887754321
Q ss_pred ---ccCC-----Cc----hHHHHHHHHHHh--cCCcEEEEEeCCCCcccccccCCCCCCCCeEEEEeecCchhhhcccCC
Q 009411 229 ---FYEE-----SE----SGRARKLCERLK--KEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDVLSSKMDC 294 (535)
Q Consensus 229 ---~~~~-----~~----~~~~~~l~~~l~--~~~~~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTtR~~~v~~~~~~~ 294 (535)
.... .. ......+.+.+. .++|+||||||||+.+.|+.+. +||+||||||+..++.. +..
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-----pGSRILVTTRd~~Va~~-l~g 283 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-----LSCKILLTTRFKQVTDF-LSA 283 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-----SSCCEEEECSCSHHHHH-HHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-----CCeEEEEeccChHHHHh-cCC
Confidence 1100 11 122334444441 3689999999999988888762 68999999999988632 222
Q ss_pred cceEecC------CCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhhcC--CHHHHHHHHHHhc
Q 009411 295 QNNFLIG------VLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNK--NTFEWKSALRELT 366 (535)
Q Consensus 295 ~~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~~~--~~~~w~~~l~~l~ 366 (535)
...|.++ +|+.+|||+||.+..+.. .. ++..+| |+|+||||+++|+.|+++ +...|...
T Consensus 284 ~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~e---eL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----- 350 (1221)
T 1vt4_I 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--PQ---DLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----- 350 (1221)
T ss_dssp HSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--TT---THHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-----
T ss_pred CeEEEecCccccCCcCHHHHHHHHHHHcCCC--HH---HHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-----
Confidence 2356666 899999999999986543 12 233343 999999999999999976 77888652
Q ss_pred CCCCCCCCcchHHHHHHHHhhhcCCCCCch-HHHHHHhhccCCCCCCCHHHHHHHhhhcccccCCCcHHHHHHHHHHHHH
Q 009411 367 RPSSGSFSGVAAEAYKTSELSYNHLEGEEL-KSTFLLCCLMDFIENPSVLYLLSYGMGLGLFKGTHTMEEARDRALTLVD 445 (535)
Q Consensus 367 ~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~-k~c~~~ls~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~l~ 445 (535)
. ...+..+|.+||+.||++ . |.||++||+||+++.|+.+.++.+|+++|. + .+..+++
T Consensus 351 -----~----~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e----dAe~~L~ 409 (1221)
T 1vt4_I 351 -----N----CDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S----DVMVVVN 409 (1221)
T ss_dssp -----S----CHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H----HHHHHHH
T ss_pred -----C----hhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------H----HHHHHHH
Confidence 1 467899999999999998 8 999999999999999999999999998871 1 2456899
Q ss_pred HHHHccccccCCCCCcEEecHHHHHHH
Q 009411 446 KLKNSYLLLDDPESETFSEHDVVRHVA 472 (535)
Q Consensus 446 ~L~~~sll~~~~~~~~~~mH~lv~~~a 472 (535)
+|+++||++..+...+|+||||+++++
T Consensus 410 eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 410 KLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 999999998765567899999999955
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=8.6e-38 Score=337.28 Aligned_cols=309 Identities=20% Similarity=0.274 Sum_probs=234.3
Q ss_pred cCCcccccccHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhcc-ccCc-ceEEEEEeCCCCCHHHHHHH
Q 009411 145 IKGYEAFESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKA-DKLF-DEVVYAEVSQRPDVKKIQGQ 220 (535)
Q Consensus 145 ~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~-~~~f-~~~~wv~v~~~~~~~~~~~~ 220 (535)
|+.+..|+||+.++++|.++|. .++.++|+|+||||+||||||.+++++... ..+| ++++|++++... ...++..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~-~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD-KSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC-HHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc-hHHHHHH
Confidence 3456679999999999999997 356789999999999999999999987654 5668 589999998763 3333333
Q ss_pred ---HHHHhCCCc-----cCCCchHHHHHHHHHHhc-CCcEEEEEeCCCCcccccccCCCCCCCCeEEEEeecCchhhhcc
Q 009411 221 ---IADKLGLKF-----YEESESGRARKLCERLKK-EKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDVLSSK 291 (535)
Q Consensus 221 ---i~~~l~~~~-----~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTtR~~~v~~~~ 291 (535)
++..++... ...........+...+.. .+++||||||+|+...+..+ ++|++||||||+..++...
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-----~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-----DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-----CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-----cCCCeEEEECCCcHHHHhc
Confidence 344555211 112233445556666653 26899999999998777654 4589999999999875422
Q ss_pred cCCcceEec---CCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhhcCCHHHHHHHHHHhcCC
Q 009411 292 MDCQNNFLI---GVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEWKSALRELTRP 368 (535)
Q Consensus 292 ~~~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~ 368 (535)
. ...+.+ ++|+.+++++||...++... ....+.+.+|+++|+|+||||+++|+.|+... ..|...++.+...
T Consensus 274 ~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~--~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 274 M--GPKYVVPVESSLGKEKGLEILSLFVNMKK--ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNK 348 (591)
T ss_dssp C--SCEEEEECCSSCCHHHHHHHHHHHHTSCG--GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSC
T ss_pred C--CCceEeecCCCCCHHHHHHHHHHHhCCCc--ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHh
Confidence 2 234444 58999999999999987522 22234688999999999999999999999763 3688888887654
Q ss_pred CCCC----CCcchHHHHHHHHhhhcCCCCCchHHHHHHhhccCCCCCCCHHHHHHHhhhcccccCCCcHHHHHHHHHHHH
Q 009411 369 SSGS----FSGVAAEAYKTSELSYNHLEGEELKSTFLLCCLMDFIENPSVLYLLSYGMGLGLFKGTHTMEEARDRALTLV 444 (535)
Q Consensus 369 ~~~~----~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~ls~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~l 444 (535)
.... ......++..+|..||+.||++ .|.||++||+||+++.|+.+.+..+|.++ .+ .+.+++
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~--------~~----~~~~~l 415 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME--------TE----EVEDIL 415 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC--------HH----HHHHHH
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccC--------HH----HHHHHH
Confidence 3221 1122468999999999999998 99999999999999999999999999643 12 245679
Q ss_pred HHHHHccccccC--CCCCcEEecHHHHHHHHHHhc
Q 009411 445 DKLKNSYLLLDD--PESETFSEHDVVRHVAMSIAS 477 (535)
Q Consensus 445 ~~L~~~sll~~~--~~~~~~~mH~lv~~~a~~~~~ 477 (535)
++|+++||++.. +...+|+||+++|+|++....
T Consensus 416 ~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 416 QEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 999999999743 233479999999999998844
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.73 E-value=2.6e-16 Score=157.64 Aligned_cols=290 Identities=13% Similarity=0.109 Sum_probs=174.5
Q ss_pred cCCcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC------CHHHHH
Q 009411 145 IKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP------DVKKIQ 218 (535)
Q Consensus 145 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~------~~~~~~ 218 (535)
+..+..|+||+.+++.|.+++..+ +++.|+|++|+|||||++++++... .+|+++.... +...++
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHHH
Confidence 345567999999999999988754 7999999999999999999997751 6777765432 566667
Q ss_pred HHHHHHhCC-----------------Ccc--CCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc---------ccccCCC
Q 009411 219 GQIADKLGL-----------------KFY--EESESGRARKLCERLKKEKKILVILDDIWTNLD---------LENVGIP 270 (535)
Q Consensus 219 ~~i~~~l~~-----------------~~~--~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~---------~~~~~~~ 270 (535)
..+...+.. ..+ ..........+.+.....++++|||||++.... +..+...
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 777666542 000 011112222333333222389999999976432 1212111
Q ss_pred CC-CCCeEEEEeecCchhhhc----------ccCC-cceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC
Q 009411 271 FG-VRGCRVLMTARSQDVLSS----------KMDC-QNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRG 338 (535)
Q Consensus 271 ~~-~~gs~ilvTtR~~~v~~~----------~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~G 338 (535)
.. .++.++|+|++....... ..+. ...+.+.+|+.+|+.+++...+........ .+.+..|++.|+|
T Consensus 159 ~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~-~~~~~~i~~~tgG 237 (350)
T 2qen_A 159 YDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP-ENEIEEAVELLDG 237 (350)
T ss_dssp HHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHHTT
T ss_pred HHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhCC
Confidence 11 247889999887542110 0111 247999999999999999886532111111 3467899999999
Q ss_pred ChHHHHHHHHHhhc-CCHHHHH-HHHHHhcCCCCCCCCcchHHHHHHHHhhhcCC---CCCchHHHHHHhhccCCCCCCC
Q 009411 339 LPIAIVTIARALRN-KNTFEWK-SALRELTRPSSGSFSGVAAEAYKTSELSYNHL---EGEELKSTFLLCCLMDFIENPS 413 (535)
Q Consensus 339 lPLai~~~~~~L~~-~~~~~w~-~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L---~~~~~k~c~~~ls~fp~~~~i~ 413 (535)
+|+++..++..+.. .+...+. ...+. +...+.-.+..+ ++. .+..+..+|. . ..+
T Consensus 238 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~l~~~~~~-~~~~l~~la~-g---~~~ 297 (350)
T 2qen_A 238 IPGWLVVFGVEYLRNGDFGRAMKRTLEV---------------AKGLIMGELEELRRRSPR-YVDILRAIAL-G---YNR 297 (350)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHH---------------HHHHHHHHHHHHHHHCHH-HHHHHHHHHT-T---CCS
T ss_pred CHHHHHHHHHHHhccccHhHHHHHHHHH---------------HHHHHHHHHHHHHhCChh-HHHHHHHHHh-C---CCC
Confidence 99999999876542 2322221 11111 111111111222 555 8889988887 2 245
Q ss_pred HHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHHccccccCCCCCcEEe-cHHHHHHHH
Q 009411 414 VLYLLSYGMGLGLFKGTHTMEEARDRALTLVDKLKNSYLLLDDPESETFSE-HDVVRHVAM 473 (535)
Q Consensus 414 ~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~m-H~lv~~~a~ 473 (535)
...+........ .+ .+. .....+++.|.+.+|+... .+.|++ |+++++|.+
T Consensus 298 ~~~l~~~~~~~~--~~-~~~----~~~~~~l~~L~~~gli~~~--~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 298 WSLIRDYLAVKG--TK-IPE----PRLYALLENLKKMNWIVEE--DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHTT--CC-CCH----HHHHHHHHHHHHTTSEEEE--TTEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHHh--CC-CCH----HHHHHHHHHHHhCCCEEec--CCEEEEecHHHHHHHc
Confidence 555544321110 00 111 2344578899999999764 245655 889998864
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.69 E-value=1.6e-15 Score=152.34 Aligned_cols=288 Identities=10% Similarity=0.129 Sum_probs=171.3
Q ss_pred CCcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC-----CCHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-----PDVKKIQGQ 220 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-----~~~~~~~~~ 220 (535)
..+..|+||+++++.|.+ +.. +++.|+|++|+|||+|++.+++.... ..+|+++... .+....+..
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHH
Confidence 345679999999999999 765 69999999999999999999987642 2578887642 344555555
Q ss_pred HHHHhC------------------CCccCC--C------chHHHHHHHHHHhc-C-CcEEEEEeCCCCccc-----cc-c
Q 009411 221 IADKLG------------------LKFYEE--S------ESGRARKLCERLKK-E-KKILVILDDIWTNLD-----LE-N 266 (535)
Q Consensus 221 i~~~l~------------------~~~~~~--~------~~~~~~~l~~~l~~-~-~~~LlVlDdv~~~~~-----~~-~ 266 (535)
+.+.+. .+.+.. . .......+.+.+.. . ++++|||||++.... +. .
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHH
Confidence 444331 000000 0 01123344444432 1 489999999965322 21 1
Q ss_pred cCCCCC-CCCeEEEEeecCchhhhc----------ccCC-cceEecCCCCHHHHHHHHHHHhCC-CCCCchhHHHHHHHH
Q 009411 267 VGIPFG-VRGCRVLMTARSQDVLSS----------KMDC-QNNFLIGVLNESEARDLFKKLVGD-KIENNDLKSLAMNIV 333 (535)
Q Consensus 267 ~~~~~~-~~gs~ilvTtR~~~v~~~----------~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~l~~~~~~i~ 333 (535)
+..... ..+.++|+|++....... ..+. ...+.+.+|+.+++.+++...+.. ...... ...|+
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~ 236 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVY 236 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHH
T ss_pred HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHH
Confidence 111011 247889999997643110 1111 257999999999999999886531 111222 27899
Q ss_pred HHcCCChHHHHHHHHHhhc-CCHHHHHH-HHHHhcCCCCCCCCcchHHHHHHHH-hhhc--CCCCCchHHHHHHhhccCC
Q 009411 334 KACRGLPIAIVTIARALRN-KNTFEWKS-ALRELTRPSSGSFSGVAAEAYKTSE-LSYN--HLEGEELKSTFLLCCLMDF 408 (535)
Q Consensus 334 ~~~~GlPLai~~~~~~L~~-~~~~~w~~-~l~~l~~~~~~~~~~~~~~v~~~l~-~sy~--~L~~~~~k~c~~~ls~fp~ 408 (535)
+.|+|+|+++..++..+.. .+...|.. ..+.. ...+...+. +.++ .||+. .+..+..+|. .
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~-g- 302 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-----------KKLILKEFENFLHGREIARKR-YLNIMRTLSK-C- 302 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT-C-
T ss_pred HHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-----------HHHHHHHHHHHhhccccccHH-HHHHHHHHHc-C-
Confidence 9999999999999887653 23333321 11110 111111121 1111 57776 8899999887 2
Q ss_pred CCCCCHHHHHHHhh-hcccccCCCcHHHHHHHHHHHHHHHHHccccccCCCCCcEE-ecHHHHHHH
Q 009411 409 IENPSVLYLLSYGM-GLGLFKGTHTMEEARDRALTLVDKLKNSYLLLDDPESETFS-EHDVVRHVA 472 (535)
Q Consensus 409 ~~~i~~~~Li~~W~-a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~-mH~lv~~~a 472 (535)
. +...+....- ..|. ..+. ....++++.|.+.+||...+ +.|+ .|++++++.
T Consensus 303 -~--~~~~l~~~~~~~~g~---~~~~----~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 303 -G--KWSDVKRALELEEGI---EISD----SEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp -B--CHHHHHHHHHHHHCS---CCCH----HHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred -C--CHHHHHHHHHHhcCC---CCCH----HHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 2 4555432210 1120 0011 23446789999999997642 4566 589999874
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.66 E-value=2.9e-15 Score=153.71 Aligned_cols=298 Identities=13% Similarity=0.050 Sum_probs=179.5
Q ss_pred ccccccHHHHHHHHHHh-c----C--CCceEEEE--EcCCCCcHHHHHHHHHHHhccc---cCcc-eEEEEEeCCCCCHH
Q 009411 149 EAFESRMSTLNDVINAL-K----N--PDVHMIGA--YGMAGVGKTMLVKEVARQAKAD---KLFD-EVVYAEVSQRPDVK 215 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L-~----~--~~~~vi~I--~G~gGiGKTtLa~~~~~~~~~~---~~f~-~~~wv~v~~~~~~~ 215 (535)
..|+||+.+++.|.+++ . . ...+.+.| +|++|+|||||++.+++..... ..|. .++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999888 4 2 34567777 9999999999999999876532 1122 36788877777888
Q ss_pred HHHHHHHHHhCCCccC--CCchHHHHHHHHHHh-cCCcEEEEEeCCCCcc--------cccccCCC---CC--C--CCeE
Q 009411 216 KIQGQIADKLGLKFYE--ESESGRARKLCERLK-KEKKILVILDDIWTNL--------DLENVGIP---FG--V--RGCR 277 (535)
Q Consensus 216 ~~~~~i~~~l~~~~~~--~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~~--------~~~~~~~~---~~--~--~gs~ 277 (535)
.++..++..++...+. .+.......+...+. .+++++|||||++... .+..+... .. + ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 9999999999765432 222334455555553 2578999999997532 22211111 11 2 4456
Q ss_pred EEEeecCchhhhc-------c-cCCcceEecCCCCHHHHHHHHHHHhC---CCCCCchhHHHHHHHHHHcC------CCh
Q 009411 278 VLMTARSQDVLSS-------K-MDCQNNFLIGVLNESEARDLFKKLVG---DKIENNDLKSLAMNIVKACR------GLP 340 (535)
Q Consensus 278 ilvTtR~~~v~~~-------~-~~~~~~~~l~~L~~~ea~~Lf~~~~~---~~~~~~~l~~~~~~i~~~~~------GlP 340 (535)
+|+||+...+... . ......+.+++|+.++++++|...+. .... --.+....|++.|+ |+|
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV--WEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS--CCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC--CChHHHHHHHHHHHHhccCCCcH
Confidence 8888875542210 0 01112399999999999999986542 2111 11346788999999 999
Q ss_pred HHHHHHHHHhh------cC---CHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHhhhcCCCCCchHHHHHHhhccC--CC
Q 009411 341 IAIVTIARALR------NK---NTFEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGEELKSTFLLCCLMD--FI 409 (535)
Q Consensus 341 Lai~~~~~~L~------~~---~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~ls~fp--~~ 409 (535)
..+..+..... +. +...+...+..... ...+.-++..||++ .+.++..++.+. .+
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATLGGM 325 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCC
Confidence 76655543221 11 33444444433210 12344567789887 888888888653 23
Q ss_pred CCCCHHHHHHHhh--h---cccccCCCcHHHHHHHHHHHHHHHHHccccccC----CCCCcEEecHHH
Q 009411 410 ENPSVLYLLSYGM--G---LGLFKGTHTMEEARDRALTLVDKLKNSYLLLDD----PESETFSEHDVV 468 (535)
Q Consensus 410 ~~i~~~~Li~~W~--a---~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~----~~~~~~~mH~lv 468 (535)
..+....+...+. + .|. .+ .+ ...+.++++.|.+.+|+... +..++|++|.+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~----~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMYNV-KP-RG----YTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHSCC-CC-CC----HHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCccHHHHHHHHHHHHHhhcCC-CC-CC----HHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 4566655544332 1 111 00 01 12345678999999999642 233456666554
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=2.1e-12 Score=130.98 Aligned_cols=278 Identities=13% Similarity=0.071 Sum_probs=171.2
Q ss_pred ccccccHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhcccc-----C-cceEEEEEeCCCC-CHHHH
Q 009411 149 EAFESRMSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADK-----L-FDEVVYAEVSQRP-DVKKI 217 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-----~-f~~~~wv~v~~~~-~~~~~ 217 (535)
..|+||+++++.+.+++. ....+.+.|+|++|+|||+||+.+++...... . ....+|++++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 679999999999887765 44467899999999999999999998763321 1 2346788877666 78888
Q ss_pred HHHHHHHh-CCCcc--CCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc-------ccccCCCCCCCCeEEEEeecCchh
Q 009411 218 QGQIADKL-GLKFY--EESESGRARKLCERLKKEKKILVILDDIWTNLD-------LENVGIPFGVRGCRVLMTARSQDV 287 (535)
Q Consensus 218 ~~~i~~~l-~~~~~--~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------~~~~~~~~~~~gs~ilvTtR~~~v 287 (535)
+..++..+ +.... ..........+...+... +.+|||||++.... +..+.... .+..+|+||+....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~~~~~l~~l~~~~--~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRGGDIVLYQLLRSD--ANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTTSHHHHHHHHTSS--SCEEEEEECSSTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCCCceeHHHHhcCC--cceEEEEEECCCch
Confidence 88888887 33222 122344566666767643 44999999975421 22221111 57889999987632
Q ss_pred h----hccc-CCcceEecCCCCHHHHHHHHHHHhC---C-CCCCchhHHHHHHHHHHcC---CChH-HHHHHHHHhh---
Q 009411 288 L----SSKM-DCQNNFLIGVLNESEARDLFKKLVG---D-KIENNDLKSLAMNIVKACR---GLPI-AIVTIARALR--- 351 (535)
Q Consensus 288 ~----~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~---~-~~~~~~l~~~~~~i~~~~~---GlPL-ai~~~~~~L~--- 351 (535)
. .... .....+.+++++.++..++|...+. . ...++ +....|++.|+ |.|. ++..+-....
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1 1100 1123899999999999999998753 1 22222 35667888888 9886 4444433331
Q ss_pred c--C-CHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHhhhcCCCCCchHHHHHHhhccCCC-CCCCHHHHHHHhhhcccc
Q 009411 352 N--K-NTFEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGEELKSTFLLCCLMDFI-ENPSVLYLLSYGMGLGLF 427 (535)
Q Consensus 352 ~--~-~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~ls~fp~~-~~i~~~~Li~~W~a~g~i 427 (535)
+ . +.+.+..+++... ...+.-++..|+++ .+..+..++. ... .++. +.....--..|.
T Consensus 254 ~~~~i~~~~v~~~~~~~~--------------~~~~~~~~~~l~~~-~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g~- 315 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE--------------QERLIEAVKALPFH-YKLALRSLIE-SEDVMSAH-KMYTDLCNKFKQ- 315 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHT-CCBHHHHH-HHHHHHHHHTTC-
T ss_pred CCCccCHHHHHHHHHHHh--------------cchHHHHHHcCCHH-HHHHHHHHHH-hcccChHH-HHHHHHHHHcCC-
Confidence 1 2 6667776666531 23456677888876 6666666665 211 1111 111111111221
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHcccccc
Q 009411 428 KGTHTMEEARDRALTLVDKLKNSYLLLD 455 (535)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~L~~~sll~~ 455 (535)
.. .+ ...+.++++.|...|++..
T Consensus 316 ~~-~~----~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 316 KP-LS----YRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp CC-CC----HHHHHHHHHHHHHTTSEEE
T ss_pred CC-CC----HHHHHHHHHHHHhCCCEEE
Confidence 11 11 2345568899999999964
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=2.7e-12 Score=130.12 Aligned_cols=287 Identities=15% Similarity=0.099 Sum_probs=169.9
Q ss_pred cccccccHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhccccC-cceEEEEEeCCCCCHHHHHHHHH
Q 009411 148 YEAFESRMSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKL-FDEVVYAEVSQRPDVKKIQGQIA 222 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~-f~~~~wv~v~~~~~~~~~~~~i~ 222 (535)
+..|+||+.+++.+.+++. ....+.+.|+|++|+|||||++.+++....... -..++|++.....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999887 445678999999999999999999987643210 12467787766667778888888
Q ss_pred HHhCCCccCC--CchHHHHHHHHHHhc-CCcEEEEEeCCCCcc------cccccCCCC---CCCCeEEEEeecCchhhhc
Q 009411 223 DKLGLKFYEE--SESGRARKLCERLKK-EKKILVILDDIWTNL------DLENVGIPF---GVRGCRVLMTARSQDVLSS 290 (535)
Q Consensus 223 ~~l~~~~~~~--~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~------~~~~~~~~~---~~~gs~ilvTtR~~~v~~~ 290 (535)
..++...... ........+.+.+.. +++.+||||+++... .+..+.... ...+..+|+||+.......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 8776543322 223334555566543 458999999996532 222221111 2345677888876643211
Q ss_pred cc------CCcceEecCCCCHHHHHHHHHHHhCC-CCCCchhHHHHHHHHHHcC---CChHHHHHHHH-Hhh-----c--
Q 009411 291 KM------DCQNNFLIGVLNESEARDLFKKLVGD-KIENNDLKSLAMNIVKACR---GLPIAIVTIAR-ALR-----N-- 352 (535)
Q Consensus 291 ~~------~~~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~l~~~~~~i~~~~~---GlPLai~~~~~-~L~-----~-- 352 (535)
.. -....+.+++++.++..+++...+.. .....-..++...+++.++ |.|..+..+.. ... +
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~ 258 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDT 258 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 00 11258999999999999999986531 0011112345667888887 99974433332 221 1
Q ss_pred C-CHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHhhhcCCCCCchHHHHHHhhccCC-C-CCCCHHHHHHHhh--h--cc
Q 009411 353 K-NTFEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGEELKSTFLLCCLMDF-I-ENPSVLYLLSYGM--G--LG 425 (535)
Q Consensus 353 ~-~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~ls~fp~-~-~~i~~~~Li~~W~--a--~g 425 (535)
. +.+.+..++.... ...+.-++..||+. .+..+..++.+-+ + ..+....+.+... + .|
T Consensus 259 ~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 259 KVKEEYVYMAKEEIE--------------RDRVRDIILTLPFH-SKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp SCCHHHHHHHHHHHH--------------HHHHHHHHHTSCHH-HHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 1 4555555554421 23455667788876 6666665553211 1 2233433322221 1 12
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHHcccccc
Q 009411 426 LFKGTHTMEEARDRALTLVDKLKNSYLLLD 455 (535)
Q Consensus 426 ~i~~~~~~~~~~~~~~~~l~~L~~~sll~~ 455 (535)
. .+ .+ ...+..+++.|...|++..
T Consensus 324 ~-~~-~~----~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 324 V-EA-VT----QRRVSDIINELDMVGILTA 347 (386)
T ss_dssp C-CC-CC----HHHHHHHHHHHHHHTSEEE
T ss_pred C-CC-CC----HHHHHHHHHHHHhCCCEEE
Confidence 1 11 01 1345567889999999964
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.41 E-value=1.3e-11 Score=125.05 Aligned_cols=283 Identities=17% Similarity=0.159 Sum_probs=174.2
Q ss_pred ccccccHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhccc----cCcceEEEEEeCCCCCHHHHHHH
Q 009411 149 EAFESRMSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAKAD----KLFDEVVYAEVSQRPDVKKIQGQ 220 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~----~~f~~~~wv~v~~~~~~~~~~~~ 220 (535)
..|+||+.+++.+..++. ....+.+.|+|++|+|||+||+.+++..... +.-...+|++.....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 679999999999999884 3456789999999999999999999876432 11124677888787888899999
Q ss_pred HHHHhCCCccCC--CchHHHHHHHHHHhc-CCcEEEEEeCCCCccc-------cccc-CCCC--C-CCCeEEEEeecCch
Q 009411 221 IADKLGLKFYEE--SESGRARKLCERLKK-EKKILVILDDIWTNLD-------LENV-GIPF--G-VRGCRVLMTARSQD 286 (535)
Q Consensus 221 i~~~l~~~~~~~--~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~-------~~~~-~~~~--~-~~gs~ilvTtR~~~ 286 (535)
++..++...+.. ........+...+.. +++.+||||+++.... +..+ .... . ..+..+|+||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 999997654332 233445566666643 4689999999975421 1111 1111 1 34567777777653
Q ss_pred hh----hcccCC--cceEecCCCCHHHHHHHHHHHhC---C-CCCCchhHHHHHHHHHHcC---CChH-HHHHHHHHhh-
Q 009411 287 VL----SSKMDC--QNNFLIGVLNESEARDLFKKLVG---D-KIENNDLKSLAMNIVKACR---GLPI-AIVTIARALR- 351 (535)
Q Consensus 287 v~----~~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~---~-~~~~~~l~~~~~~i~~~~~---GlPL-ai~~~~~~L~- 351 (535)
.. ...... ...+.+++++.++..+++...+. . ....+ +....+++.++ |.|- ++..+.....
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 21 111111 14799999999999999998753 1 12222 24667888888 9993 3333333221
Q ss_pred ----c--C-CHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHhhhcCCCCCchHHHHHHhh-ccCCCCCCCHHHHHHHhh-
Q 009411 352 ----N--K-NTFEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGEELKSTFLLCC-LMDFIENPSVLYLLSYGM- 422 (535)
Q Consensus 352 ----~--~-~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~ls-~fp~~~~i~~~~Li~~W~- 422 (535)
+ . +.+.+..++.... ...+.-++..|+++ .+..+..++ ++.....+....+.+...
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEIE--------------RDRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 1 1 5666666665531 22355567888886 666665555 443223454554443321
Q ss_pred ---hcccccCCCcHHHHHHHHHHHHHHHHHcccccc
Q 009411 423 ---GLGLFKGTHTMEEARDRALTLVDKLKNSYLLLD 455 (535)
Q Consensus 423 ---a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~ 455 (535)
..|. .+ .+ ...+.++++.|...|++..
T Consensus 321 ~~~~~~~-~~-~~----~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 321 LTSTLGL-EH-VT----LRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHHHTTC-CC-CC----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHhcCC-CC-CC----HHHHHHHHHHHHhCCCeEE
Confidence 1121 11 11 2345567889999999864
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.36 E-value=4.7e-11 Score=121.12 Aligned_cols=285 Identities=15% Similarity=0.094 Sum_probs=174.4
Q ss_pred ccccccHHHHHHHHHHhcC----CCce--EEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHH
Q 009411 149 EAFESRMSTLNDVINALKN----PDVH--MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 222 (535)
..++||+.+++.+..++.. .... .+.|+|++|+|||||++.+++...... -..++|++.+...+...++..++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 5799999999999988863 3334 899999999999999999998865321 12467777777778889999999
Q ss_pred HHhCCCccCC--CchHHHHHHHHHHh-cCCcEEEEEeCCCCcc--cccccCCCC---CC---CCeEEEEeecCchhhhcc
Q 009411 223 DKLGLKFYEE--SESGRARKLCERLK-KEKKILVILDDIWTNL--DLENVGIPF---GV---RGCRVLMTARSQDVLSSK 291 (535)
Q Consensus 223 ~~l~~~~~~~--~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~~--~~~~~~~~~---~~---~gs~ilvTtR~~~v~~~~ 291 (535)
..++...+.. ........+...+. .+++.+||||+++... .+..+.... .. .+..||+||+........
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 9987654322 23334444555443 2468999999997642 222221111 12 477888888776432111
Q ss_pred c------CCcceEecCCCCHHHHHHHHHHHhCC-CCCCchhHHHHHHHHHHc---------CCChHHHHHHHHHhh----
Q 009411 292 M------DCQNNFLIGVLNESEARDLFKKLVGD-KIENNDLKSLAMNIVKAC---------RGLPIAIVTIARALR---- 351 (535)
Q Consensus 292 ~------~~~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~l~~~~~~i~~~~---------~GlPLai~~~~~~L~---- 351 (535)
. -....+.+++++.++..+++...+.. .....--.+....|++.+ +|.|..+..+.....
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 0 01236999999999999999887632 000111134677899999 788754444333221
Q ss_pred --cC---CHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHhhhcCCCCCchHHHHHHhhccC---CCCCCCHHHHHHHhhh
Q 009411 352 --NK---NTFEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGEELKSTFLLCCLMD---FIENPSVLYLLSYGMG 423 (535)
Q Consensus 352 --~~---~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~ls~fp---~~~~i~~~~Li~~W~a 423 (535)
+. +.+....+....... .+.-.+..||.+ .+.++..++.+. .+..+....+...+..
T Consensus 256 ~~~~~~i~~~~v~~~~~~~~~~--------------~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 256 QNGRKHIAPEDVRKSSKEVLFG--------------ISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HTTCSSCCHHHHHHHHHHHSCC--------------CCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HhCCCCcCHHHHHHHHHHHhhh--------------hHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 11 444444444443211 112335567776 777777666554 2224555666554422
Q ss_pred ----cccccCCCcHHHHHHHHHHHHHHHHHcccccc
Q 009411 424 ----LGLFKGTHTMEEARDRALTLVDKLKNSYLLLD 455 (535)
Q Consensus 424 ----~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~ 455 (535)
.|... -+ ...+..++++|...+++..
T Consensus 321 ~~~~~~~~~--~~----~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 321 VCEEYGERP--RV----HSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp HHHHTTCCC--CC----HHHHHHHHHHHHHTTSSEE
T ss_pred HHHHcCCCC--CC----HHHHHHHHHHHHhCCCeEE
Confidence 12111 01 2345678999999999964
No 12
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.34 E-value=2e-11 Score=113.33 Aligned_cols=188 Identities=9% Similarity=0.083 Sum_probs=116.9
Q ss_pred CCcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHh
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL 225 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 225 (535)
.....++||+..++.+.+++.....+.+.|+|++|+|||+||+.+++.......-...+.++.+.......+...+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 34567899999999999999876666699999999999999999998754322112234444444333333222221111
Q ss_pred CCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEEEeecCchhh-hcccCCcceEec
Q 009411 226 GLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLMTARSQDVL-SSKMDCQNNFLI 300 (535)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~ilvTtR~~~v~-~~~~~~~~~~~l 300 (535)
.... ...+++.+||+||++... ....+...+ ...++++|+||+..... .........+.+
T Consensus 94 ~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 94 RTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp TSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred cccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 1100 112467999999997642 222221111 14567888888775422 111223348999
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHH
Q 009411 301 GVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARA 349 (535)
Q Consensus 301 ~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~ 349 (535)
.+++.++..+++...+....... -.+....|++.++|.|..+..+...
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGVKI-TEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999998774211111 1345778999999999865554443
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.33 E-value=2.1e-11 Score=114.92 Aligned_cols=197 Identities=11% Similarity=0.148 Sum_probs=116.0
Q ss_pred CCcccccccHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
.....++||+.+++.+..++.... .+.+.|+|++|+||||||+.+++.......+.. ........ ...+...
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~ 92 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQG 92 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHTT
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhcc
Confidence 345679999999999999887443 458899999999999999999987653221100 00000000 0011000
Q ss_pred hCCC-----ccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCc--ccccccCCCC--CCCCeEEEEeecCchhh-hc
Q 009411 225 LGLK-----FYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPF--GVRGCRVLMTARSQDVL-SS 290 (535)
Q Consensus 225 l~~~-----~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~~~~~~--~~~gs~ilvTtR~~~v~-~~ 290 (535)
.... ............+.+.+. .+++.+||+||++.. ..+..+...+ ...+..+|+||+..... ..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp CCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 0000 000011112223333321 246799999999653 2333331111 14578888888765422 11
Q ss_pred ccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHh
Q 009411 291 KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (535)
Q Consensus 291 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L 350 (535)
.......+.+++++.++..+++...+....... -.+....|++.|+|+|..+..+...+
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 122346899999999999999998774221111 13457789999999999888776544
No 14
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.30 E-value=1.4e-12 Score=107.16 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=58.5
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHHHHHhccccccc
Q 009411 29 NYKSNLEKLKNEVQKLRGAKESVQQKIDDAKRSG-EDIEQRVENWLITADEILDAAARIIEGTEDTT 94 (535)
Q Consensus 29 ~~~~~~~~l~~~l~~L~~~l~~i~~~l~~a~~~~-~~~~~~v~~wl~~l~~~~~d~ed~ld~~~~~~ 94 (535)
+++..+.++++++++|+++|++|+++|.+++.+. ...++.++.|+++||+++||+||+||+|.++.
T Consensus 16 ~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 16 EEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQV 82 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556788999999999999999999999999874 24588999999999999999999999997654
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.12 E-value=4.1e-10 Score=111.03 Aligned_cols=189 Identities=14% Similarity=0.109 Sum_probs=115.5
Q ss_pred CCcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHh
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL 225 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 225 (535)
.....++|++..++.+..++..+..+.+.|+|++|+|||++|+.+++..........+++++.+....... .++++..+
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~ 96 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV-VRNQIKHF 96 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH-HHTHHHHH
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH-HHHHHHHH
Confidence 34567899999999999999877666699999999999999999998854321112244444443323222 22222221
Q ss_pred CCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEEEeecCchhh-hcccCCcceEec
Q 009411 226 GLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLMTARSQDVL-SSKMDCQNNFLI 300 (535)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~ilvTtR~~~v~-~~~~~~~~~~~l 300 (535)
..... .+..+++.++|+||++... ....+...+ +..++.+|+||+...-. .........+.+
T Consensus 97 ~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~ 163 (323)
T 1sxj_B 97 AQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRY 163 (323)
T ss_dssp HHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred Hhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEee
Confidence 10000 0002457999999997642 222221111 14567888888664321 112233458999
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH-HHHHHHHH
Q 009411 301 GVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI-AIVTIARA 349 (535)
Q Consensus 301 ~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~~~~ 349 (535)
.+++.++..+++...+....... -.+....|++.|+|.|. ++..+...
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 164 SKLSDEDVLKRLLQIIKLEDVKY-TNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999998763211111 12457789999999995 45554443
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=1.7e-09 Score=106.85 Aligned_cols=187 Identities=10% Similarity=0.092 Sum_probs=113.1
Q ss_pred CCcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHh
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL 225 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 225 (535)
.....++|++..++.+..++..+..+.+.|+|++|+|||++|+.+++.......-...+.+..+...... .....+.
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-- 98 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGIN-VIREKVK-- 98 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHH-TTHHHHH--
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchH-HHHHHHH--
Confidence 3456789999999999999887666669999999999999999999875422111123333332211111 0111111
Q ss_pred CCCccCCCchHHHHHHHHH--HhcCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEEEeecCchhh-hcccCCcceE
Q 009411 226 GLKFYEESESGRARKLCER--LKKEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLMTARSQDVL-SSKMDCQNNF 298 (535)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~--l~~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~ilvTtR~~~v~-~~~~~~~~~~ 298 (535)
..... +..+++.++|+|+++... ....+...+ ...++++|+||....-. .........+
T Consensus 99 --------------~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 99 --------------EFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp --------------HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred --------------HHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 00000 111467899999997542 222221111 14577888888765321 1111223478
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHh
Q 009411 299 LIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (535)
Q Consensus 299 ~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L 350 (535)
.+.+++.++...++...+...... --.+....|++.++|.|..+..+...+
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 999999999999999876432211 113467789999999998665544443
No 17
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.93 E-value=4.5e-08 Score=96.48 Aligned_cols=174 Identities=11% Similarity=0.086 Sum_probs=106.7
Q ss_pred CcccccccHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHH
Q 009411 147 GYEAFESRMSTLNDVINALK-----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI 221 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 221 (535)
....|+|++..+..+..++. ......+.|+|++|+|||+||+.+++..... .++++.+......++.
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~-----~~~~~~~~~~~~~~l~--- 81 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN-----LRVTSGPAIEKPGDLA--- 81 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC-----EEEECTTTCCSHHHHH---
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC-----EEEEeccccCChHHHH---
Confidence 45679999999888887775 2344678899999999999999999876421 2344433322222221
Q ss_pred HHHhCCCccCCCchHHHHHHHHHHhc--CCcEEEEEeCCCCccc--cccc-------C--CCC-----------CCCCeE
Q 009411 222 ADKLGLKFYEESESGRARKLCERLKK--EKKILVILDDIWTNLD--LENV-------G--IPF-----------GVRGCR 277 (535)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~~--~~~~LlVlDdv~~~~~--~~~~-------~--~~~-----------~~~gs~ 277 (535)
..+.. .++.+|+||++..... ...+ . ... ..++..
T Consensus 82 ---------------------~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 82 ---------------------AILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ---------------------HHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ---------------------HHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 11211 3457888999875421 1111 0 000 012456
Q ss_pred EEEeecCchhh-hcccCC-cceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHh
Q 009411 278 VLMTARSQDVL-SSKMDC-QNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (535)
Q Consensus 278 ilvTtR~~~v~-~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L 350 (535)
+|.||...... ...... ...+.+.+++.++...++...+......- -.+....|++.++|+|-.+..+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI-TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 77776654321 111122 25799999999999999988774221111 13467889999999998777666554
No 18
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.87 E-value=6e-08 Score=94.26 Aligned_cols=168 Identities=7% Similarity=0.056 Sum_probs=105.4
Q ss_pred cccccHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhccccC---c--ceEEEEEeCCCCCHHHHHHH
Q 009411 150 AFESRMSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKL---F--DEVVYAEVSQRPDVKKIQGQ 220 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~---f--~~~~wv~v~~~~~~~~~~~~ 220 (535)
.+.||++++++|...|. .+..+.+.|+|++|+|||++++.+++....... . -..++++...-.+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 36799999999987776 566788999999999999999999998753211 1 13556666666788899999
Q ss_pred HHHHhCCCcc-CCCchHHHHHHHHHH--hcCCcEEEEEeCCCCccccccc----CCC-CCCCCeEEEEeecCchhhhcc-
Q 009411 221 IADKLGLKFY-EESESGRARKLCERL--KKEKKILVILDDIWTNLDLENV----GIP-FGVRGCRVLMTARSQDVLSSK- 291 (535)
Q Consensus 221 i~~~l~~~~~-~~~~~~~~~~l~~~l--~~~~~~LlVlDdv~~~~~~~~~----~~~-~~~~gs~ilvTtR~~~v~~~~- 291 (535)
|++++..... ..........+...+ ..+++++++||+++....-+.+ ..+ .......||.++.........
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhc
Confidence 9999954321 122233445555544 2357899999999765321111 001 111222344444332221100
Q ss_pred ------cCCcceEecCCCCHHHHHHHHHHHhC
Q 009411 292 ------MDCQNNFLIGVLNESEARDLFKKLVG 317 (535)
Q Consensus 292 ------~~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (535)
.-....+.+.+++.+|-.+++..++.
T Consensus 181 ~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 181 NIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 01124799999999999999998763
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.82 E-value=4.2e-08 Score=96.33 Aligned_cols=185 Identities=8% Similarity=0.104 Sum_probs=112.1
Q ss_pred CCcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHh
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL 225 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 225 (535)
.....++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++.......-...+.++.+.......+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------- 85 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV-------- 85 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTS--------
T ss_pred CCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHH--------
Confidence 345678999999999999888766666899999999999999999987532211112233444332111000
Q ss_pred CCCccCCCchHHHHHHHHH--HhcCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEEEeecCchh-hhcccCCcceE
Q 009411 226 GLKFYEESESGRARKLCER--LKKEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLMTARSQDV-LSSKMDCQNNF 298 (535)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~--l~~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~ilvTtR~~~v-~~~~~~~~~~~ 298 (535)
.......... +..+++.++|+|+++... ....+...+ ...++++|+||....- ..........+
T Consensus 86 ---------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i 156 (319)
T 2chq_A 86 ---------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (319)
T ss_dssp ---------SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEE
T ss_pred ---------HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEE
Confidence 0011111100 112457899999997542 222221111 1456778888766532 11122334589
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 009411 299 LIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIAR 348 (535)
Q Consensus 299 ~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 348 (535)
.+.+++.++...++...+......-+ .+....|++.++|.+..+.....
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 157 RFKPVPKEAMKKRLLEICEKEGVKIT-EDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCCCBC-HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999887643222111 34577899999999976554443
No 20
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.76 E-value=1.9e-08 Score=90.58 Aligned_cols=153 Identities=13% Similarity=0.162 Sum_probs=87.6
Q ss_pred CcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhcccc-----CcceEEEEEeCCCCCHHHHHHHH
Q 009411 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADK-----LFDEVVYAEVSQRPDVKKIQGQI 221 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-----~f~~~~wv~v~~~~~~~~~~~~i 221 (535)
....++||+++++.+.+.+.....+.+.|+|++|+|||+||+.+++...... ....+++++.+. +.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--- 90 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV--- 90 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH---
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh---
Confidence 3457899999999999999877677889999999999999999998764311 012234443211 10
Q ss_pred HHHhCCCccCCCchHHHHHHHHHH-hcCCcEEEEEeCCCCcc---------ccc-ccCCCCCCCCeEEEEeecCchhh--
Q 009411 222 ADKLGLKFYEESESGRARKLCERL-KKEKKILVILDDIWTNL---------DLE-NVGIPFGVRGCRVLMTARSQDVL-- 288 (535)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~~LlVlDdv~~~~---------~~~-~~~~~~~~~gs~ilvTtR~~~v~-- 288 (535)
...............+...+ ..+++.+|||||++... .+. .+.......+..+|+||......
T Consensus 91 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~ 166 (195)
T 1jbk_A 91 ----AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQY 166 (195)
T ss_dssp ----TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHH
T ss_pred ----ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHHHHH
Confidence 00000000111223333333 23567899999996542 111 11111113345677777655321
Q ss_pred ----hcccCCcceEecCCCCHHHHHHHH
Q 009411 289 ----SSKMDCQNNFLIGVLNESEARDLF 312 (535)
Q Consensus 289 ----~~~~~~~~~~~l~~L~~~ea~~Lf 312 (535)
.........+.+.+++.++..+++
T Consensus 167 ~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 167 IEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 111222336889999988876654
No 21
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.75 E-value=1e-07 Score=95.89 Aligned_cols=194 Identities=11% Similarity=0.132 Sum_probs=110.8
Q ss_pred CcccccccHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHh
Q 009411 147 GYEAFESRMSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL 225 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 225 (535)
....++|++..++.+...+..+. ...+.|+|++|+||||+|+.+++.......+.. ..+........+....
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~~~~ 86 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQGR 86 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHHTSC
T ss_pred chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHhccC
Confidence 34568999999999999887544 457889999999999999999987653221100 0000000111111000
Q ss_pred CCC-----ccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--cccccCCC--CCCCCeEEEEeecCch-hhhcc
Q 009411 226 GLK-----FYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIP--FGVRGCRVLMTARSQD-VLSSK 291 (535)
Q Consensus 226 ~~~-----~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~--~~~~gs~ilvTtR~~~-v~~~~ 291 (535)
... .......+....+.+.+. .+++.++|+||++... ....+... ....+..+|++|.... +....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 000 000011112333444432 2457899999996542 22222111 1134667777776543 21212
Q ss_pred cCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 009411 292 MDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIAR 348 (535)
Q Consensus 292 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 348 (535)
......+.+.+++.++..+++...+....... -.+....|++.++|.|..+..+..
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~-~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 23346899999999999999987763211111 124577899999999987766543
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.62 E-value=2.1e-06 Score=81.53 Aligned_cols=179 Identities=18% Similarity=0.203 Sum_probs=98.2
Q ss_pred cccccccHHHHHHHHHHh---cC---------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHH
Q 009411 148 YEAFESRMSTLNDVINAL---KN---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK 215 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~ 215 (535)
...++|.+..++.+.+.+ .. ...+.+.|+|++|+|||++|+.+++..... .+.++.+.-.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP-----FLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEechHHHHhh-
Confidence 456778877766665443 21 234568899999999999999999876421 233443322110
Q ss_pred HHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc-------------c----ccccC---CCC-CCC
Q 009411 216 KIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL-------------D----LENVG---IPF-GVR 274 (535)
Q Consensus 216 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~-------------~----~~~~~---~~~-~~~ 274 (535)
. ..........+........+.+|+||+++... . +..+. ... ...
T Consensus 79 -------------~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 -------------I-GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------S-TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------c-cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0 00011223334444443467999999997541 0 11110 011 134
Q ss_pred CeEEEEeecCchhhhc-cc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH-HHHHH
Q 009411 275 GCRVLMTARSQDVLSS-KM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI-AIVTI 346 (535)
Q Consensus 275 gs~ilvTtR~~~v~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~ 346 (535)
+..||.||........ .. .....+.++..+.++-.+++...+...............+++.+.|.+- .|..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 5667777765542211 11 1225788999999999999988764222222222234678888887643 44433
No 23
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.59 E-value=9.3e-07 Score=90.63 Aligned_cols=179 Identities=15% Similarity=0.193 Sum_probs=106.2
Q ss_pred CCcccccccHHHH---HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC-CCHHHHHHHH
Q 009411 146 KGYEAFESRMSTL---NDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-PDVKKIQGQI 221 (535)
Q Consensus 146 ~~~~~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i 221 (535)
.....++|.+..+ ..|...+.....+.+.|+|++|+||||||+.+++..... | +.++.. ....+ ++.+
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~--f-----~~l~a~~~~~~~-ir~~ 94 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD--V-----ERISAVTSGVKE-IREA 94 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE--E-----EEEETTTCCHHH-HHHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC--e-----EEEEeccCCHHH-HHHH
Confidence 4456789999888 677777777777889999999999999999999886432 2 233222 12222 1222
Q ss_pred HHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccCCCCCCCCeEEEE-eecCch--hhhcccCCcc
Q 009411 222 ADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENVGIPFGVRGCRVLM-TARSQD--VLSSKMDCQN 296 (535)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~~~~~~~~~gs~ilv-TtR~~~--v~~~~~~~~~ 296 (535)
+. ........+++.+|+||+++... ....+...+......+|. ||.+.. +.........
T Consensus 95 ~~----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~ 158 (447)
T 3pvs_A 95 IE----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRAR 158 (447)
T ss_dssp HH----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEE
T ss_pred HH----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCcee
Confidence 11 11111123567999999997642 222221111122334444 444432 1122223445
Q ss_pred eEecCCCCHHHHHHHHHHHhCCC------CCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 009411 297 NFLIGVLNESEARDLFKKLVGDK------IENNDLKSLAMNIVKACRGLPIAIVTIAR 348 (535)
Q Consensus 297 ~~~l~~L~~~ea~~Lf~~~~~~~------~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 348 (535)
.+.+.+++.++...++.+.+... ....--.+....|++.++|.+-.+..+..
T Consensus 159 v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 159 VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 88999999999999998876421 11111235677888999998865554443
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.57 E-value=8.9e-07 Score=85.41 Aligned_cols=179 Identities=17% Similarity=0.193 Sum_probs=104.9
Q ss_pred CCcccccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC
Q 009411 146 KGYEAFESRMSTLNDVINALKN-------------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP 212 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~ 212 (535)
..+..++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++..... .+.+..+.-.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~~ 88 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSELV 88 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGGC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHHH
Confidence 3456788999999888877641 345678999999999999999999876432 2233322211
Q ss_pred CHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc----------------ccccc----CCCCC
Q 009411 213 DVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------DLENV----GIPFG 272 (535)
Q Consensus 213 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------------~~~~~----~~~~~ 272 (535)
. ... .........+.......++.+|+||+++... .+..+ .....
T Consensus 89 ~--------------~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 89 K--------------KFI-GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp C--------------CST-THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred H--------------hcc-chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0 000 0111223344444444567899999996420 01111 00111
Q ss_pred CCCeEEEEeecCchhhhc-cc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChHHHHHH
Q 009411 273 VRGCRVLMTARSQDVLSS-KM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRG-LPIAIVTI 346 (535)
Q Consensus 273 ~~gs~ilvTtR~~~v~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~G-lPLai~~~ 346 (535)
..+..||.||........ .. .....+.+++.+.++-.++|...+.......+ .....|++.+.| .|-.+..+
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHHHHHH
Confidence 346778888876543211 11 12247899999999999999988753222111 114567777777 45444443
No 25
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.56 E-value=1e-07 Score=89.28 Aligned_cols=173 Identities=11% Similarity=0.113 Sum_probs=102.3
Q ss_pred ccccccc---HHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 148 YEAFESR---MSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 148 ~~~~~gR---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
...|+|+ ...++.+..+......+.+.|+|++|+|||+||+.+++..... ...+.|++.+..... +
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~--- 95 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------S--- 95 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------C---
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------H---
Confidence 4456653 3566666666666567889999999999999999999886543 234566665432110 0
Q ss_pred hCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc----ccccCCCC---CCCC-eEEEEeecCchhh-----hcc
Q 009411 225 LGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD----LENVGIPF---GVRG-CRVLMTARSQDVL-----SSK 291 (535)
Q Consensus 225 l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----~~~~~~~~---~~~g-s~ilvTtR~~~v~-----~~~ 291 (535)
......+ .++.+||+||++.... ...+...+ ...+ .++|+||+...-. ...
T Consensus 96 --------------~~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l 159 (242)
T 3bos_A 96 --------------TALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDL 159 (242)
T ss_dssp --------------GGGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHH
T ss_pred --------------HHHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhh
Confidence 0001111 2457999999965421 11121110 1122 2477877654210 000
Q ss_pred c---CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 009411 292 M---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIAR 348 (535)
Q Consensus 292 ~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 348 (535)
. .....+.+.+++.++..+++...+...... --.+....|++.++|.+-.+..+..
T Consensus 160 ~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 160 VSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ-LPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC-CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHccCCHHHHHHHHH
Confidence 1 112689999999999999999876421111 1134677899999998876655443
No 26
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.56 E-value=3.9e-07 Score=90.76 Aligned_cols=195 Identities=13% Similarity=0.142 Sum_probs=110.8
Q ss_pred CCcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCc-ceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLF-DEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
.....++|+++.++.+..++.....+.+.|+|++|+||||+|+.+++.......+ ..+..++.+.......+ .+....
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 112 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKN 112 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHH
Confidence 3456789999999999999987655558999999999999999999875421111 12333444433333222 222111
Q ss_pred hC-CCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccCCCC--CCCCeEEEEeecCch-hhhcccCCcceE
Q 009411 225 LG-LKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLMTARSQD-VLSSKMDCQNNF 298 (535)
Q Consensus 225 l~-~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~~~~~~--~~~gs~ilvTtR~~~-v~~~~~~~~~~~ 298 (535)
+. ......... .......+++-+|++|+++... ....+...+ .....++|++|.... +..........+
T Consensus 113 ~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 113 FARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred Hhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 11 000000000 0011112345799999986542 112221101 134567777775443 211111223478
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 009411 299 LIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIA 347 (535)
Q Consensus 299 ~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 347 (535)
.+.+++.++....+...+......- -.+....|++.++|.|-.+..+.
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~i-~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVKC-DDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHTSSCHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999988764221111 13467899999999997654443
No 27
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.55 E-value=3.9e-07 Score=95.68 Aligned_cols=191 Identities=10% Similarity=0.081 Sum_probs=107.7
Q ss_pred CCcccccccHHHHHHHHHHhcC-----------------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEe
Q 009411 146 KGYEAFESRMSTLNDVINALKN-----------------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV 208 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v 208 (535)
.....++|++..++.+.+++.. +..+.+.|+|++|+|||++|+.+++... + .++.++.
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~ 110 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNA 110 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeC
Confidence 4467799999999999999864 1347899999999999999999998873 2 2344555
Q ss_pred CCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHH-HhcCCcEEEEEeCCCCccc-----ccccCCCCCCCCeEEEEee
Q 009411 209 SQRPDVKKIQGQIADKLGLKFYEESESGRARKLCER-LKKEKKILVILDDIWTNLD-----LENVGIPFGVRGCRVLMTA 282 (535)
Q Consensus 209 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~~~~~LlVlDdv~~~~~-----~~~~~~~~~~~gs~ilvTt 282 (535)
+...... +....+........-.. ........ ...+++.+|++|+++.... +..+.......+..||+++
T Consensus 111 s~~~~~~-~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~ 186 (516)
T 1sxj_A 111 SDVRSKT-LLNAGVKNALDNMSVVG---YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILIC 186 (516)
T ss_dssp TSCCCHH-HHHHTGGGGTTBCCSTT---TTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEE
T ss_pred CCcchHH-HHHHHHHHHhccccHHH---HHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEE
Confidence 5444432 22222221111000000 00000000 1125678999999965421 1222111112233455555
Q ss_pred cCchh--hhcccCCcceEecCCCCHHHHHHHHHHHhC--CCCCCchhHHHHHHHHHHcCCC-hHHHHHHHH
Q 009411 283 RSQDV--LSSKMDCQNNFLIGVLNESEARDLFKKLVG--DKIENNDLKSLAMNIVKACRGL-PIAIVTIAR 348 (535)
Q Consensus 283 R~~~v--~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~--~~~~~~~l~~~~~~i~~~~~Gl-PLai~~~~~ 348 (535)
..... ..........+.+.+++.++..+++...+. +...++ +....|++.++|. +-++..+..
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHTH
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHHH
Confidence 44321 111223345799999999999999987663 111222 2467889999995 455555543
No 28
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.45 E-value=1.3e-06 Score=86.05 Aligned_cols=177 Identities=10% Similarity=0.094 Sum_probs=101.3
Q ss_pred CCcccccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
.....++|++..++.+.+++..... .++.+.|++|+|||++|+.+++.... .++.++.+.. .. +.++..+..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~-~~-~~i~~~~~~ 95 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDC-KI-DFVRGPLTN 95 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTC-CH-HHHHTHHHH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEccccc-CH-HHHHHHHHH
Confidence 4467789999999999999986554 56777888999999999999987642 2445554332 22 222222111
Q ss_pred hCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc---cccccCCCCC--CCCeEEEEeecCchhh-hcccCCcceE
Q 009411 225 LGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL---DLENVGIPFG--VRGCRVLMTARSQDVL-SSKMDCQNNF 298 (535)
Q Consensus 225 l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---~~~~~~~~~~--~~gs~ilvTtR~~~v~-~~~~~~~~~~ 298 (535)
...... ..+++.+|++|+++... ....+...+. ..++++|+||....-. .........+
T Consensus 96 ~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i 160 (324)
T 3u61_B 96 FASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVI 160 (324)
T ss_dssp HHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEE
T ss_pred HHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEE
Confidence 100000 01367899999998654 2222211111 2456788887765321 1111223579
Q ss_pred ecCCCCHHHHHHHH-------HHHhCCCCCCchhHHHHHHHHHHcCCChHHHH
Q 009411 299 LIGVLNESEARDLF-------KKLVGDKIENNDLKSLAMNIVKACRGLPIAIV 344 (535)
Q Consensus 299 ~l~~L~~~ea~~Lf-------~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~ 344 (535)
.+++++.++-.+++ ...+......-.-.+....|++.++|.+-.+.
T Consensus 161 ~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 161 TFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHH
Confidence 99999988844333 22222111111102457788899988775433
No 29
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.44 E-value=2.1e-06 Score=85.01 Aligned_cols=174 Identities=15% Similarity=0.180 Sum_probs=103.1
Q ss_pred CCcccccccHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALK-----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 220 (535)
.....++|++..++.+..++. ......+.|+|++|+|||+||+.+++..... | +.++.+......
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~--~---~~~~~~~~~~~~----- 95 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN--I---KTTAAPMIEKSG----- 95 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC--E---EEEEGGGCCSHH-----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC--e---EEecchhccchh-----
Confidence 345679999999998888776 2345678999999999999999998875422 2 233322221111
Q ss_pred HHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--c-------ccccCC-------------CCCCCCeEE
Q 009411 221 IADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--D-------LENVGI-------------PFGVRGCRV 278 (535)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~-------~~~~~~-------------~~~~~gs~i 278 (535)
......... .+..+|+||+++... . ++.... ....++..+
T Consensus 96 ----------------~~~~~~~~~--~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 96 ----------------DLAAILTNL--SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp ----------------HHHHHHHTC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred ----------------HHHHHHHhc--cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 111111111 356788899887541 1 111000 001123566
Q ss_pred EEeecCchhh-hcccC-CcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 009411 279 LMTARSQDVL-SSKMD-CQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIAR 348 (535)
Q Consensus 279 lvTtR~~~v~-~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 348 (535)
|.+|...... ..... ....+.+.+++.++...++...+..... .--.+....|++.+.|.|-.+..+..
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 6666654321 11112 2368999999999999999887742211 11134677888999999955544433
No 30
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.43 E-value=5.3e-06 Score=79.34 Aligned_cols=193 Identities=16% Similarity=0.183 Sum_probs=100.0
Q ss_pred cccccHHHHHHHHH-------Hhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHH
Q 009411 150 AFESRMSTLNDVIN-------ALK---NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (535)
Q Consensus 150 ~~~gR~~~~~~l~~-------~L~---~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 219 (535)
.++|....++++.. .+. ....+.+.|+|++|+|||+||+.+++..... | +.+..+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~--~---~~i~~~~~~------- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP--F---IKICSPDKM------- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS--E---EEEECGGGC-------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEeCHHHh-------
Confidence 45666555555444 332 4456788999999999999999999875321 2 222222110
Q ss_pred HHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCc-----------c-ccccc---CCCC--CCCCeEEEEee
Q 009411 220 QIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN-----------L-DLENV---GIPF--GVRGCRVLMTA 282 (535)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~-----------~-~~~~~---~~~~--~~~gs~ilvTt 282 (535)
.+. ...........+.......+..+|+||+++.. . .+..+ .... .+....||.||
T Consensus 102 -----~g~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt 174 (272)
T 1d2n_A 102 -----IGF--SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT 174 (272)
T ss_dssp -----TTC--CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE
T ss_pred -----cCC--chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec
Confidence 000 00000112233333333356789999998542 0 11111 1111 12344567777
Q ss_pred cCchhhhc--ccCC-cceEecCCCCH-HHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC------hHHHHHHHHHhhc
Q 009411 283 RSQDVLSS--KMDC-QNNFLIGVLNE-SEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL------PIAIVTIARALRN 352 (535)
Q Consensus 283 R~~~v~~~--~~~~-~~~~~l~~L~~-~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~Gl------PLai~~~~~~L~~ 352 (535)
........ .... ...+.+++++. ++...++.... . . . .+....|++.+.|. +-++..+-.....
T Consensus 175 n~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-~-~-~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 175 SRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-N-F-K---DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp SCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-C-S-C---HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS
T ss_pred CChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-C-C-C---HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh
Confidence 76643221 1122 35688999988 66666666532 1 1 1 23467888888873 3333333333222
Q ss_pred CCHHHHHHHHHHhcC
Q 009411 353 KNTFEWKSALRELTR 367 (535)
Q Consensus 353 ~~~~~w~~~l~~l~~ 367 (535)
.+...+..+++.+..
T Consensus 249 ~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 249 DPEYRVRKFLALLRE 263 (272)
T ss_dssp CGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 244556666555433
No 31
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.42 E-value=1.2e-05 Score=78.00 Aligned_cols=181 Identities=14% Similarity=0.199 Sum_probs=102.6
Q ss_pred CCcccccccHHHHHHHHHHhcC------------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 146 KGYEAFESRMSTLNDVINALKN------------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
.....++|.+..++.+.+.+.. ...+.+.|+|++|+|||++|+.+++..... .+.++.+.-..
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~-----~~~i~~~~l~~ 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT-----FLNISAASLTS 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE-----EEEEESTTTSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEeeHHHHhh
Confidence 3456789999998888877631 235688999999999999999999876421 23333332111
Q ss_pred HHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc-----------------ccccC-CCCC--C
Q 009411 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD-----------------LENVG-IPFG--V 273 (535)
Q Consensus 214 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-----------------~~~~~-~~~~--~ 273 (535)
... .........+.......++.+|+||+++.... +..+. .+.. +
T Consensus 93 --------------~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 --------------KYV-GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp --------------SSC-SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred --------------ccc-chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 000 11122233344444345678999999964311 00110 1111 2
Q ss_pred CCeEEEEeecCchhhh-ccc-CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH-HHHHHH
Q 009411 274 RGCRVLMTARSQDVLS-SKM-DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI-AIVTIA 347 (535)
Q Consensus 274 ~gs~ilvTtR~~~v~~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~~ 347 (535)
.+..||.||....... ... .....+.+...+.++-..++...+........ ......|++.+.|.+- ++..+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD-TEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC-HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456777777643211 001 12246778888888888888877642211111 2356788888988775 454443
No 32
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.40 E-value=2.8e-05 Score=76.25 Aligned_cols=182 Identities=17% Similarity=0.164 Sum_probs=105.4
Q ss_pred CcccccccHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH
Q 009411 147 GYEAFESRMSTLNDVINALK------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 214 (535)
....+.|-+..++.|.+.+. ....+.|.|+|++|+|||+||+.+++..... ..+.++.+.-.+
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~~i~~~~l~~- 84 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDLVS- 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC----EEEEEECCSSCC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC----cEEEEEhHHHHh-
Confidence 45567888887777776552 1234678999999999999999999876211 123333332110
Q ss_pred HHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------cccc----CCC-CCCCCe
Q 009411 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD-------------LENV----GIP-FGVRGC 276 (535)
Q Consensus 215 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~~----~~~-~~~~gs 276 (535)
... .........+.......++.+|+||+++.... ...+ ... ....+.
T Consensus 85 -------------~~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 85 -------------KWL-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp -------------SSC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred -------------hhh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 001 11223344455544445789999999975410 0111 000 113456
Q ss_pred EEEEeecCchhhhc-c-cCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC-hHHHHHHHH
Q 009411 277 RVLMTARSQDVLSS-K-MDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL-PIAIVTIAR 348 (535)
Q Consensus 277 ~ilvTtR~~~v~~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~Gl-PLai~~~~~ 348 (535)
.||.||........ . ......+.++..+.++-.+++...+........ ......|++.+.|. +-.|..+..
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT-EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC-HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66667755432210 1 122357888999999999999988754322111 23467889999886 444555443
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.39 E-value=7.5e-06 Score=81.62 Aligned_cols=181 Identities=14% Similarity=0.121 Sum_probs=103.9
Q ss_pred CcccccccHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH
Q 009411 147 GYEAFESRMSTLNDVINALK------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 214 (535)
....++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++.... ..+.++.+.-..
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~- 155 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTS- 155 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC-
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhc-
Confidence 45568899998888887763 134567899999999999999999987642 133444432111
Q ss_pred HHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc-------------ccccc----C-CC-CCCCC
Q 009411 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL-------------DLENV----G-IP-FGVRG 275 (535)
Q Consensus 215 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~-------------~~~~~----~-~~-~~~~g 275 (535)
... .........+.......++.+|+||+++... ....+ . .. ....+
T Consensus 156 -------------~~~-g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 156 -------------KWV-GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp -------------SST-THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred -------------ccc-chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 000 0011222333333333567999999984320 01111 1 00 01235
Q ss_pred eEEEEeecCchhh-hccc-CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChHHHHHHHH
Q 009411 276 CRVLMTARSQDVL-SSKM-DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRG-LPIAIVTIAR 348 (535)
Q Consensus 276 s~ilvTtR~~~v~-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~G-lPLai~~~~~ 348 (535)
..||.||...... .... .....+.+...+.++..+++...+......- .......|++.+.| .+-.|..+..
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l-~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL-SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc-cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5666677554322 1111 2224778899999999999987764221111 12456788999988 4556655544
No 34
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.36 E-value=6.4e-06 Score=80.89 Aligned_cols=181 Identities=17% Similarity=0.168 Sum_probs=106.3
Q ss_pred CCcccccccHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 146 KGYEAFESRMSTLNDVINALK------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
.....++|.+..++.|.+.+. ....+-+.|+|++|+|||+||+.+++..... | +.++.+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~--~---~~v~~~---- 85 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST--F---FSVSSS---- 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE--E---EEEEHH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC--E---EEEchH----
Confidence 446678899999988888762 1124578999999999999999999876421 2 223221
Q ss_pred HHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------cccc----CCC-CCCCC
Q 009411 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD-------------LENV----GIP-FGVRG 275 (535)
Q Consensus 214 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~~----~~~-~~~~g 275 (535)
++... .. .........+.......++.+|+||+++.... ...+ ... ....+
T Consensus 86 --~l~~~--------~~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 --DLVSK--------WM-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp --HHHTT--------TG-GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred --HHhhc--------cc-chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 11110 00 11122334444444445679999999974311 1111 101 12345
Q ss_pred eEEEEeecCchhhhc-c-cCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC-hHHHHHHH
Q 009411 276 CRVLMTARSQDVLSS-K-MDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL-PIAIVTIA 347 (535)
Q Consensus 276 s~ilvTtR~~~v~~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~Gl-PLai~~~~ 347 (535)
..||.||........ . ......+.++..+.++-.++|...+........ ......|++.+.|. +-.|..+.
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT-KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC-HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 667767766433210 0 112356788899999999999998864332211 23467888888874 54444443
No 35
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=2e-06 Score=85.69 Aligned_cols=195 Identities=12% Similarity=0.087 Sum_probs=105.3
Q ss_pred CCcccccccHHHHHHHHHHh-cCCCceEEEEEcCCCCcHHHHHHHHHHHhcccc----Ccce------------------
Q 009411 146 KGYEAFESRMSTLNDVINAL-KNPDVHMIGAYGMAGVGKTMLVKEVARQAKADK----LFDE------------------ 202 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~------------------ 202 (535)
.....++|++..++.+..++ ..+..+.+.|+|++|+||||+++.++....... .+++
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 34567889999999999988 655555599999999999999999988532110 0111
Q ss_pred --EEEEEeCCCC-CHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc--ccc----cCCCCCC
Q 009411 203 --VVYAEVSQRP-DVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD--LEN----VGIPFGV 273 (535)
Q Consensus 203 --~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--~~~----~~~~~~~ 273 (535)
.+.+..+... ......++++..+.....-... . . ...+. +++-++|||++...+. ... +..+ .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~-~-ls~l~-~~~~vlilDE~~~L~~~~~~~L~~~le~~--~ 162 (354)
T 1sxj_E 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ---D-S-KDGLA-HRYKCVIINEANSLTKDAQAALRRTMEKY--S 162 (354)
T ss_dssp SSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS--T
T ss_pred cceEEecHhhcCCcchHHHHHHHHHHHHhcccccc---c-c-ccccC-CCCeEEEEeCccccCHHHHHHHHHHHHhh--c
Confidence 1111111100 0000122222222111000000 0 0 00011 3567999999976421 111 1111 3
Q ss_pred CCeEEEEeecCch-hhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 009411 274 RGCRVLMTARSQD-VLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIAR 348 (535)
Q Consensus 274 ~gs~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 348 (535)
.++.+|++|.... +..........+.+.+++.++..+.+...+......-+-.+....|++.++|.+-.+..+..
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4677887776643 22222233468999999999999999987632111000013567899999999865544443
No 36
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.33 E-value=4.8e-06 Score=83.37 Aligned_cols=195 Identities=9% Similarity=0.062 Sum_probs=100.2
Q ss_pred cccccccHHHHHH---HHHHhcCCCc--eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeC----CCCCHHHHH
Q 009411 148 YEAFESRMSTLND---VINALKNPDV--HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVS----QRPDVKKIQ 218 (535)
Q Consensus 148 ~~~~~gR~~~~~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~----~~~~~~~~~ 218 (535)
...|+|++..++. +.+.+..... +.+.|+|++|+|||++|+.+++.......| +.+... ......+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence 5679999988665 4455554433 589999999999999999999987632222 122211 122333444
Q ss_pred HHHHHHhC-C--------------------Ccc-------C--CCchHHHH----HHHHH-HhcCC----cEEEEEeCCC
Q 009411 219 GQIADKLG-L--------------------KFY-------E--ESESGRAR----KLCER-LKKEK----KILVILDDIW 259 (535)
Q Consensus 219 ~~i~~~l~-~--------------------~~~-------~--~~~~~~~~----~l~~~-l~~~~----~~LlVlDdv~ 259 (535)
.+.+.... . ... . ........ ..... ...++ +.+|+||+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 43333210 0 000 0 00011111 11111 11233 4599999997
Q ss_pred Ccc--cccccCCCCC-CCCeEEEEeecC------------c-hhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCc
Q 009411 260 TNL--DLENVGIPFG-VRGCRVLMTARS------------Q-DVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENN 323 (535)
Q Consensus 260 ~~~--~~~~~~~~~~-~~gs~ilvTtR~------------~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 323 (535)
... ....+...+. .....++++|.. . .+..........+.+.+++.++..+++...+......-
T Consensus 200 ~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~~ 279 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEM 279 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCCB
T ss_pred ccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 542 1111111111 111234444431 1 11111122334689999999999999998764211111
Q ss_pred hhHHHHHHHHHHcC-CChHHHHHH
Q 009411 324 DLKSLAMNIVKACR-GLPIAIVTI 346 (535)
Q Consensus 324 ~l~~~~~~i~~~~~-GlPLai~~~ 346 (535)
-.+....|++.+. |.|-.+..+
T Consensus 280 -~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 280 -SEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp -CHHHHHHHHHHHHHSCHHHHHHH
T ss_pred -CHHHHHHHHHHhcCCCHHHHHHH
Confidence 1345778888887 777554433
No 37
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.32 E-value=2.9e-06 Score=87.74 Aligned_cols=151 Identities=13% Similarity=0.170 Sum_probs=86.9
Q ss_pred CcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccC---cce--EEEEEeCCCCCHHHHHHHH
Q 009411 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKL---FDE--VVYAEVSQRPDVKKIQGQI 221 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~---f~~--~~wv~v~~~~~~~~~~~~i 221 (535)
...+++||+.+++.+...|......-+.|+|++|+|||++|+.+++....... ... ++.++.+.
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~----------- 246 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT----------- 246 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-----------
Confidence 34579999999999999998665667789999999999999999988532110 111 22222220
Q ss_pred HHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcccccccCCCCCCCCeEEEEeecCchh------hhcccCCc
Q 009411 222 ADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDV------LSSKMDCQ 295 (535)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTtR~~~v------~~~~~~~~ 295 (535)
.. .. ........+...+...++.+|++| ...+....+...+.....++|.+|..... ........
T Consensus 247 --~~----~g-~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf 317 (468)
T 3pxg_A 247 --KY----RG-EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRF 317 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSE
T ss_pred --cc----cc-hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhC
Confidence 00 00 001123345555554567899999 22222222322222334566666655431 11111233
Q ss_pred ceEecCCCCHHHHHHHHHHHhC
Q 009411 296 NNFLIGVLNESEARDLFKKLVG 317 (535)
Q Consensus 296 ~~~~l~~L~~~ea~~Lf~~~~~ 317 (535)
..+.+++.+.++..+++.....
T Consensus 318 ~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 318 QPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp EEEECCCCCHHHHHHHHHHTTT
T ss_pred ccceeCCCCHHHHHHHHHHHHH
Confidence 4799999999999999997663
No 38
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.32 E-value=6.7e-06 Score=84.27 Aligned_cols=181 Identities=13% Similarity=0.188 Sum_probs=103.7
Q ss_pred ccccc-ccH--HHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHH
Q 009411 148 YEAFE-SRM--STLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (535)
Q Consensus 148 ~~~~~-gR~--~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 223 (535)
+..|+ |.. .....+.......+ ...+.|+|++|+||||||+.+++.......-..+++++.. .+..++..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~ 177 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVD 177 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHH
Confidence 34565 533 23344444444433 6788999999999999999999876432111224555433 23344444
Q ss_pred HhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc----ccccCCCC---CCCCeEEEEeecCchhh-----h--
Q 009411 224 KLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD----LENVGIPF---GVRGCRVLMTARSQDVL-----S-- 289 (535)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----~~~~~~~~---~~~gs~ilvTtR~~~v~-----~-- 289 (535)
.+... ....+...+. .++.+|+|||++.... .+.+...+ ...|..||+||.+..-. .
T Consensus 178 ~~~~~--------~~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 178 SMKEG--------KLNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp HHHTT--------CHHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred HHHcc--------cHHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 33211 0122333333 2567999999965431 11121111 14577899998864211 0
Q ss_pred -cccCCcceEecCCCCHHHHHHHHHHHhC--CCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 009411 290 -SKMDCQNNFLIGVLNESEARDLFKKLVG--DKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (535)
Q Consensus 290 -~~~~~~~~~~l~~L~~~ea~~Lf~~~~~--~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 346 (535)
........+.+++++.++-.+++.+.+. +...++ +....|++.++|.+-.+.-+
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHH
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHH
Confidence 0112235789999999999999988763 111222 24678889999988655443
No 39
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=5.3e-06 Score=82.15 Aligned_cols=182 Identities=11% Similarity=0.095 Sum_probs=103.3
Q ss_pred CCcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHh
Q 009411 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL 225 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 225 (535)
.....++|.+..++.|...+..++.+.+.++|++|+||||+|+.+++.......-..+..++.+.......+. +++..+
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir-~~i~~~ 100 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVR-NQIKDF 100 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHH-THHHHH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHH-HHHHHH
Confidence 3455678999999998888887766568999999999999999999875422100112333333322222211 111111
Q ss_pred CCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccCCC--CCCCCeEEEEeecCch-hhhcccCCcceEec
Q 009411 226 GLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENVGIP--FGVRGCRVLMTARSQD-VLSSKMDCQNNFLI 300 (535)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~~~~~--~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~l 300 (535)
..... ...+.+-++|+|+++... ....+... .+...+++|++|.... +..........+.+
T Consensus 101 ~~~~~--------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~ 166 (340)
T 1sxj_C 101 ASTRQ--------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRF 166 (340)
T ss_dssp HHBCC--------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred Hhhcc--------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEec
Confidence 00000 001246789999986432 11111100 0134566777765442 21112223357899
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHH
Q 009411 301 GVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (535)
Q Consensus 301 ~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 343 (535)
.+++.++..+.+...+......-+ ....+.|++.++|.+--+
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~~i~-~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 167 QPLPQEAIERRIANVLVHEKLKLS-PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCCBC-HHHHHHHHHHHTTCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 999999999988877632111111 245678889999987643
No 40
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.32 E-value=1.3e-05 Score=77.81 Aligned_cols=172 Identities=13% Similarity=0.213 Sum_probs=100.6
Q ss_pred CcccccccHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 147 GYEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
....+.|.+..++.|.+++. -...+.+.|+|++|+|||+||+.+++..... ++.++
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-------~i~v~---- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIK---- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-------EEEEC----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-------EEEEE----
Confidence 34568888887777776553 1345678999999999999999999876421 22222
Q ss_pred HHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--------------------cccccCCCCCC
Q 009411 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--------------------DLENVGIPFGV 273 (535)
Q Consensus 214 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--------------------~~~~~~~~~~~ 273 (535)
..++.... .+.. ......+........+.+|+||+++... .+..+......
T Consensus 82 ~~~l~~~~---~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 82 GPELLTMW---FGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHHHHHHH---HTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred hHHHHhhh---cCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 22333322 1211 1223444444444568999999996321 01111111113
Q ss_pred CCeEEEEeecCchhhh-cccC---CcceEecCCCCHHHHHHHHHHHhCCCC--CCchhHHHHHHHHHHcCCChHH
Q 009411 274 RGCRVLMTARSQDVLS-SKMD---CQNNFLIGVLNESEARDLFKKLVGDKI--ENNDLKSLAMNIVKACRGLPIA 342 (535)
Q Consensus 274 ~gs~ilvTtR~~~v~~-~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~--~~~~l~~~~~~i~~~~~GlPLa 342 (535)
.+..||.||....... .... ....+.++..+.++-.+++...+.... ...+ ...++..+.|.|-+
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 4567777887654321 1111 235788999999999999988775322 1222 23566677777644
No 41
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.31 E-value=2.1e-05 Score=79.44 Aligned_cols=181 Identities=15% Similarity=0.176 Sum_probs=103.2
Q ss_pred CCcccccccHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 146 KGYEAFESRMSTLNDVINALK------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
.....++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++.... ..+.++.+.-..
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~~ 186 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLTS 186 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC--
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhhc
Confidence 446678999999999888773 123467899999999999999999887542 123333322111
Q ss_pred HHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--------c-----ccccCC-----C-CCCC
Q 009411 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--------D-----LENVGI-----P-FGVR 274 (535)
Q Consensus 214 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--------~-----~~~~~~-----~-~~~~ 274 (535)
.. .. ........+........+.+|+||+++... . ...+.. . ....
T Consensus 187 --~~------------~g-~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 --KY------------VG-EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred --cc------------cc-hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 00 00 111223344444444466899999996430 0 001100 0 0123
Q ss_pred CeEEEEeecCchhh-hcccC-CcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh-HHHHHHH
Q 009411 275 GCRVLMTARSQDVL-SSKMD-CQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP-IAIVTIA 347 (535)
Q Consensus 275 gs~ilvTtR~~~v~-~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP-Lai~~~~ 347 (535)
...||.||...... ..... ....+.+...+.++-.+++...+......-. ......|++.+.|.. -+|..+.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~-~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT-QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC-HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 45566667654322 11112 2246889999999999999988753222111 235678888888854 3554443
No 42
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.29 E-value=1.7e-06 Score=84.51 Aligned_cols=152 Identities=9% Similarity=0.078 Sum_probs=83.1
Q ss_pred cccccHHHHHHHHHHhc---------------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH
Q 009411 150 AFESRMSTLNDVINALK---------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 214 (535)
.++|.+..++.|.+.+. ......+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 46787777776665443 234457899999999999999999887654332222223333211
Q ss_pred HHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCc-----------ccccccCCCC--CCCCeEEEEe
Q 009411 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN-----------LDLENVGIPF--GVRGCRVLMT 281 (535)
Q Consensus 215 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~-----------~~~~~~~~~~--~~~gs~ilvT 281 (535)
.+...... ........+.... +..+|+||+++.. .....+...+ ...+..||+|
T Consensus 109 ---------~l~~~~~g-~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYIG-HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSSTT-CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhccc-ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 00000001 0111122222222 3469999999733 1112221111 1345677777
Q ss_pred ecCchhh------hccc-CCcceEecCCCCHHHHHHHHHHHhC
Q 009411 282 ARSQDVL------SSKM-DCQNNFLIGVLNESEARDLFKKLVG 317 (535)
Q Consensus 282 tR~~~v~------~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (535)
|...... .... .....+.+++++.++-..++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 7543210 0001 1126899999999999999987764
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.29 E-value=2.3e-05 Score=80.46 Aligned_cols=183 Identities=16% Similarity=0.190 Sum_probs=104.8
Q ss_pred CCcccccccHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 146 KGYEAFESRMSTLNDVINALK------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
..+..++|.+..++.|.+.+. ....+.|.|+|++|+|||+||+.+++.... .-++.++...
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~------~~~~~v~~~~- 203 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSISSSD- 203 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS------SEEEEECCC--
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC------CCEEEEeHHH-
Confidence 345678899988888887663 123467899999999999999999987621 1233333221
Q ss_pred HHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc-------------cccccCCCC-----CCCC
Q 009411 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL-------------DLENVGIPF-----GVRG 275 (535)
Q Consensus 214 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~-------------~~~~~~~~~-----~~~g 275 (535)
+.... .+. .......+.......++.+|+||+++... ....+...+ ...+
T Consensus 204 ---l~~~~---~g~------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 204 ---LVSKW---LGE------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp --------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred ---HHhhh---cch------HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 11111 110 01123344444444568999999997541 011111111 1345
Q ss_pred eEEEEeecCchhhh-ccc-CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC-hHHHHHHHH
Q 009411 276 CRVLMTARSQDVLS-SKM-DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL-PIAIVTIAR 348 (535)
Q Consensus 276 s~ilvTtR~~~v~~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~Gl-PLai~~~~~ 348 (535)
..||.||....... ... .....+.++..+.++-..+|...+........ ......|++.+.|. +-.|..+..
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT-EADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC-HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66777776553321 111 22347888888999999999988754321111 23467888899884 445544443
No 44
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.25 E-value=1.8e-06 Score=77.12 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=43.1
Q ss_pred CcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
....++||+.+++.+.+.+.....+.+.|+|++|+|||+||+.+++...
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3557899999999999999877677889999999999999999998764
No 45
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=2.3e-05 Score=78.13 Aligned_cols=172 Identities=13% Similarity=0.195 Sum_probs=101.3
Q ss_pred CcccccccHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 147 GYEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
.+.++.|-++.+++|.+.+. -...+-|.++|++|+|||.||+++++..... | +.++.+.-.+
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~--f---~~v~~s~l~s 220 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK--F---IRVSGAELVQ 220 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE--E---EEEEGGGGSC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC--c---eEEEhHHhhc
Confidence 35567787777777665543 1235678899999999999999999987643 2 3343332111
Q ss_pred HHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc----------c------ccc----cCCCCCC
Q 009411 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------D------LEN----VGIPFGV 273 (535)
Q Consensus 214 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------~------~~~----~~~~~~~ 273 (535)
... ......+..++.......+++|++|+++... . +.. +......
T Consensus 221 --------------k~v-Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 221 --------------KYI-GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp --------------SST-THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred --------------ccc-chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 000 0112234445554445678999999997431 0 011 1111124
Q ss_pred CCeEEEEeecCchhhhc-c---cCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 009411 274 RGCRVLMTARSQDVLSS-K---MDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (535)
Q Consensus 274 ~gs~ilvTtR~~~v~~~-~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP 340 (535)
.+..||.||........ . ..-...+.++.-+.++-.++|+.+........+. -...|++.+.|.-
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv--dl~~lA~~t~G~S 354 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI--NLRKVAEKMNGCS 354 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC--CHHHHHHHCCSCC
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHCCCCC
Confidence 45667777776654311 1 1234689999999999999998877532222111 1456778887753
No 46
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.23 E-value=1.4e-05 Score=79.42 Aligned_cols=182 Identities=16% Similarity=0.164 Sum_probs=104.2
Q ss_pred CCcccccccHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 146 KGYEAFESRMSTLNDVINALK------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
.....++|.+..++.|.+.+. ....+-|.|+|++|+|||+||+.+++..... .+.++.+
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~---- 118 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS---- 118 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH----
Confidence 345678899888888887662 1123468899999999999999999887421 2223221
Q ss_pred HHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------ccccCC----C-CCCCC
Q 009411 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD-------------LENVGI----P-FGVRG 275 (535)
Q Consensus 214 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~~~~----~-~~~~g 275 (535)
++... ... ........+.......++.+|+||+++.... ...+.. . ....+
T Consensus 119 --~l~~~--------~~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 --DLVSK--------WMG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp --HHHSC--------C----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred --HHhhh--------hcc-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 11110 001 1122334444444445789999999974321 111100 0 01345
Q ss_pred eEEEEeecCchhhh-cc-cCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChHHHHHHHH
Q 009411 276 CRVLMTARSQDVLS-SK-MDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRG-LPIAIVTIAR 348 (535)
Q Consensus 276 s~ilvTtR~~~v~~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~G-lPLai~~~~~ 348 (535)
..||.||....... .. ......+.+...+.++-.+++...+........ ......|++.+.| .+-.|..+..
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~-~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT-KEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC-HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66666776553221 01 123357788999999999999988764321111 2346788899988 4544554443
No 47
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.20 E-value=5.9e-06 Score=92.06 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=88.5
Q ss_pred CcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhcccc---Cc--ceEEEEEeCCCCCHHHHHHHH
Q 009411 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADK---LF--DEVVYAEVSQRPDVKKIQGQI 221 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~---~f--~~~~wv~v~~~~~~~~~~~~i 221 (535)
...+++||++++..+++.|.......+.|+|++|+|||++|+.+++...... .. ..+++++.+.-..
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------- 239 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------- 239 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred CCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc--------
Confidence 4567899999999999999876666788999999999999999998763211 11 1233443321100
Q ss_pred HHHhCCCccCCCchHHHHHHHHHHhc-CCcEEEEEeCCCCccc-------cccc--CCC-CCCCCeEEEEeecCchh---
Q 009411 222 ADKLGLKFYEESESGRARKLCERLKK-EKKILVILDDIWTNLD-------LENV--GIP-FGVRGCRVLMTARSQDV--- 287 (535)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~-------~~~~--~~~-~~~~gs~ilvTtR~~~v--- 287 (535)
+.. ...........+...+.. +++.+|++|+++.... +... ..+ +...+..+|.+|.....
T Consensus 240 ----g~~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~~ 314 (854)
T 1qvr_A 240 ----GAK-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREI 314 (854)
T ss_dssp -----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHH
T ss_pred ----cCc-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhhh
Confidence 000 001122234445555543 3679999999975420 1111 011 11334456665544321
Q ss_pred --hhcccCCcceEecCCCCHHHHHHHHHHHh
Q 009411 288 --LSSKMDCQNNFLIGVLNESEARDLFKKLV 316 (535)
Q Consensus 288 --~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (535)
..........+.+++++.++..+++....
T Consensus 315 ~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 315 EKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp TTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred ccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 11122233469999999999999997544
No 48
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.20 E-value=2.6e-05 Score=76.88 Aligned_cols=165 Identities=13% Similarity=0.137 Sum_probs=100.1
Q ss_pred cHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhcccc--------------------CcceEEEEEeCCCC
Q 009411 154 RMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADK--------------------LFDEVVYAEVSQRP 212 (535)
Q Consensus 154 R~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~--------------------~f~~~~wv~v~~~~ 212 (535)
.++..+.+...+..++. ..+.++|++|+|||++|+.+++...... |++ ..++.....
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~- 84 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKG- 84 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTT-
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecccc-
Confidence 35556777777776554 5689999999999999999998754321 122 222222100
Q ss_pred CHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHh----cCCcEEEEEeCCCCcc--c----ccccCCCCCCCCeEEEEee
Q 009411 213 DVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTNL--D----LENVGIPFGVRGCRVLMTA 282 (535)
Q Consensus 213 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~----~~~~~~~~~~~gs~ilvTt 282 (535)
......+.+..+.+.+. .+++-++|+|+++... . +..+..| ..++.+|++|
T Consensus 85 -----------------~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep--~~~~~~Il~t 145 (334)
T 1a5t_A 85 -----------------KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP--PAETWFFLAT 145 (334)
T ss_dssp -----------------CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC--CTTEEEEEEE
T ss_pred -----------------CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC--CCCeEEEEEe
Confidence 00111122333333332 1457899999997542 1 2222222 4467777777
Q ss_pred cCch-hhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHH
Q 009411 283 RSQD-VLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (535)
Q Consensus 283 R~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 345 (535)
.+.. +..........+.+.+++.++..+.+.... . .. .+.+..+++.++|.|..+..
T Consensus 146 ~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~--~-~~---~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 146 REPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV--T-MS---QDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC--C-CC---HHHHHHHHHHTTTCHHHHHH
T ss_pred CChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc--C-CC---HHHHHHHHHHcCCCHHHHHH
Confidence 6653 332233444689999999999999998876 1 11 23467899999999975543
No 49
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=3.6e-05 Score=77.84 Aligned_cols=170 Identities=18% Similarity=0.246 Sum_probs=99.5
Q ss_pred CcccccccHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 147 GYEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
.+.++.|-++.+++|.+.+. -...+-|.++|++|+|||.||+++++..... .+.++.+.-.+
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s 253 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD 253 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc
Confidence 35566787777777665543 1235788899999999999999999987642 23344332211
Q ss_pred HHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc----------------cccc----CCCCCC
Q 009411 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD----------------LENV----GIPFGV 273 (535)
Q Consensus 214 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----------------~~~~----~~~~~~ 273 (535)
... .........+........+++|++|+++.... +..+ ......
T Consensus 254 --------------k~~-Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 --------------KYI-GESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp --------------SSS-SHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred --------------ccc-hHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 000 01112333444444446789999999974210 0111 011113
Q ss_pred CCeEEEEeecCchhhhc-ccC---CcceEecCCCCHHHHHHHHHHHhCCCC--CCchhHHHHHHHHHHcCCCh
Q 009411 274 RGCRVLMTARSQDVLSS-KMD---CQNNFLIGVLNESEARDLFKKLVGDKI--ENNDLKSLAMNIVKACRGLP 340 (535)
Q Consensus 274 ~gs~ilvTtR~~~v~~~-~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~--~~~~l~~~~~~i~~~~~GlP 340 (535)
.+..||.||........ ... -...+.++..+.++-.++|+.++.... ...+ ...|++.+.|.-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 45667778876654321 112 234788888888888899987764322 2223 356777887753
No 50
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.17 E-value=8.7e-06 Score=80.02 Aligned_cols=165 Identities=16% Similarity=0.127 Sum_probs=92.3
Q ss_pred HHHHHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCc
Q 009411 157 TLNDVINALKNP--DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESE 234 (535)
Q Consensus 157 ~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~ 234 (535)
....+...+..+ ....+.|+|++|+||||||+.+++..... -..+++++. .++...+...+...
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~------~~~~~~~~~~~~~~------ 87 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSA------DDFAQAMVEHLKKG------ 87 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEH------HHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEH------HHHHHHHHHHHHcC------
Confidence 344444544443 34678999999999999999999876432 112445543 23333333332110
Q ss_pred hHHHHHHHHHHhcCCcEEEEEeCCCCccc---c-cccCCCC---CCCCeEEEEeecCchh-----hhc---ccCCcceEe
Q 009411 235 SGRARKLCERLKKEKKILVILDDIWTNLD---L-ENVGIPF---GVRGCRVLMTARSQDV-----LSS---KMDCQNNFL 299 (535)
Q Consensus 235 ~~~~~~l~~~l~~~~~~LlVlDdv~~~~~---~-~~~~~~~---~~~gs~ilvTtR~~~v-----~~~---~~~~~~~~~ 299 (535)
........+. +..+|+|||+..... + ..+...+ ...+..||+||.+... ... .......+.
T Consensus 88 --~~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~ 163 (324)
T 1l8q_A 88 --TINEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVE 163 (324)
T ss_dssp --CHHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEE
T ss_pred --cHHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEE
Confidence 1122233333 357999999965431 1 1121111 1346678888865421 000 112225689
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHH
Q 009411 300 IGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIA 342 (535)
Q Consensus 300 l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLa 342 (535)
+++ +.++..+++...+......- -.+....|++.+ |.+-.
T Consensus 164 l~~-~~~e~~~il~~~~~~~~~~l-~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 164 IEL-DNKTRFKIIKEKLKEFNLEL-RKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CCC-CHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-SSHHH
T ss_pred eCC-CHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHhC-CCHHH
Confidence 999 99999999998774211111 134567888888 77643
No 51
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=4e-05 Score=77.41 Aligned_cols=170 Identities=15% Similarity=0.186 Sum_probs=99.5
Q ss_pred cccccccHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH
Q 009411 148 YEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 214 (535)
+..+.|-++.+++|.+.+. -...+-|.++|++|+|||.||+++++..... | +.++.+.-.+
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~--f---i~vs~s~L~s- 281 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT--F---IRVIGSELVQ- 281 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE--E---EEEEGGGGCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC--e---EEEEhHHhhc-
Confidence 4466788877777766532 1346788899999999999999999987642 2 3333322110
Q ss_pred HHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc--------------------ccccCCCCCCC
Q 009411 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD--------------------LENVGIPFGVR 274 (535)
Q Consensus 215 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--------------------~~~~~~~~~~~ 274 (535)
... ......+..+........+++|++|+++.... +..+.......
T Consensus 282 -------------k~v-Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 -------------KYV-GEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -------------CSS-SHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -------------ccC-CHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 000 01122334444444446789999999974310 11111111134
Q ss_pred CeEEEEeecCchhhhc-cc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 009411 275 GCRVLMTARSQDVLSS-KM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (535)
Q Consensus 275 gs~ilvTtR~~~v~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~Gl 339 (535)
+..||.||........ .. .-...+.++..+.++-.++|+.++.......+. -...|++.|.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv--dl~~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI--RWELISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHCCCC
Confidence 5566777765543311 11 234678889899999999998877533222211 135677888875
No 52
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=1.9e-05 Score=79.81 Aligned_cols=170 Identities=14% Similarity=0.180 Sum_probs=98.1
Q ss_pred CCcccccccHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC
Q 009411 146 KGYEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP 212 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~ 212 (535)
..+..+.|-++.+++|.+.+. -...+-|.++|++|+|||.||+++++..... .+.++.+.-.
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~ 252 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQLV 252 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGC
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhhh
Confidence 345677888888888776542 1235778899999999999999999987642 2333332211
Q ss_pred CHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCc-------cc-------------ccccCCCCC
Q 009411 213 DVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN-------LD-------------LENVGIPFG 272 (535)
Q Consensus 213 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~-------~~-------------~~~~~~~~~ 272 (535)
+ .... ........+........+++|++|+++.. .. +..+.....
T Consensus 253 ~--------------~~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 253 Q--------------MYIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp S--------------SCSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred h--------------cccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 0 0000 11122334444333456899999998521 00 111111111
Q ss_pred CCCeEEEEeecCchhhhcc-c---CCcceEecCCCCHHHHHHHHHHHhCCCC--CCchhHHHHHHHHHHcCCC
Q 009411 273 VRGCRVLMTARSQDVLSSK-M---DCQNNFLIGVLNESEARDLFKKLVGDKI--ENNDLKSLAMNIVKACRGL 339 (535)
Q Consensus 273 ~~gs~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~--~~~~l~~~~~~i~~~~~Gl 339 (535)
..+..||.||......... . .-...+.++..+.++-.++|+.++.... ...+ ...|++.+.|.
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 3445666677666543211 1 1234788888899988899887664211 2222 35677888775
No 53
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=5.2e-05 Score=75.82 Aligned_cols=170 Identities=17% Similarity=0.204 Sum_probs=98.9
Q ss_pred CCcccccccHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC
Q 009411 146 KGYEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP 212 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~ 212 (535)
..+.++.|-++.+++|.+.+. -...+-|.++|++|+|||.||+++++..... | +.++.+.-.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--f---i~v~~s~l~ 253 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--F---LRIVGSELI 253 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--E---EEEESGGGC
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--E---EEEEHHHhh
Confidence 345566787777777665442 1235778999999999999999999987642 2 233322211
Q ss_pred CHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc--------------------ccccCCCCC
Q 009411 213 DVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD--------------------LENVGIPFG 272 (535)
Q Consensus 213 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--------------------~~~~~~~~~ 272 (535)
+ ... ......+..++.......+++|++|+++.... +..+.....
T Consensus 254 s--------------k~v-Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 254 Q--------------KYL-GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp C--------------SSS-SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred h--------------ccC-chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 0 000 11122334444444456789999999863210 001101111
Q ss_pred CCCeEEEEeecCchhhhc-ccC---CcceEecCCCCHHHHHHHHHHHhCCCCC--CchhHHHHHHHHHHcCCC
Q 009411 273 VRGCRVLMTARSQDVLSS-KMD---CQNNFLIGVLNESEARDLFKKLVGDKIE--NNDLKSLAMNIVKACRGL 339 (535)
Q Consensus 273 ~~gs~ilvTtR~~~v~~~-~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~--~~~l~~~~~~i~~~~~Gl 339 (535)
..+..||.||........ ... -...+.++.-+.++-.++|+.++..... ..+ ...|++.+.|.
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 345667778776654321 121 2246888888899999999887753222 223 34677777775
No 54
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.10 E-value=3.6e-05 Score=84.82 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=94.3
Q ss_pred CcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhcccc----CcceEEE-EEeCCCCCHHHHHHHH
Q 009411 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADK----LFDEVVY-AEVSQRPDVKKIQGQI 221 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~w-v~v~~~~~~~~~~~~i 221 (535)
...+++||+.++..+.+.|......-+.|+|++|+|||++|+.+++...... .....+| ++.+.-
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 4567899999999999999876667788999999999999999998753221 1122222 111110
Q ss_pred HHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--------c---ccccCCCCCCCCeEEEEeecCchhh--
Q 009411 222 ADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--------D---LENVGIPFGVRGCRVLMTARSQDVL-- 288 (535)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--------~---~~~~~~~~~~~gs~ilvTtR~~~v~-- 288 (535)
+...............+...+...++.+|++|+++... . ...+...+...+..+|.+|......
T Consensus 254 ---~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~ 330 (758)
T 1r6b_X 254 ---LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNI 330 (758)
T ss_dssp ----CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCC
T ss_pred ---hccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhh
Confidence 00000111222344455555554457999999997541 1 1122222234456666666544321
Q ss_pred ----hcccCCcceEecCCCCHHHHHHHHHHHh
Q 009411 289 ----SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (535)
Q Consensus 289 ----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (535)
.........+.+++.+.++..+++....
T Consensus 331 ~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 0011223468999999999999988654
No 55
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.07 E-value=1.6e-05 Score=87.59 Aligned_cols=153 Identities=13% Similarity=0.167 Sum_probs=87.8
Q ss_pred CcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccC---cceEEEEEeCCCCCHHHHHHHHHH
Q 009411 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKL---FDEVVYAEVSQRPDVKKIQGQIAD 223 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~---f~~~~wv~v~~~~~~~~~~~~i~~ 223 (535)
...+++||+.+++.+...|......-+.++|++|+|||++|+.+++....... ....-++.++-
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 35679999999999999998666666889999999999999999988532110 01111111111
Q ss_pred HhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcccccccCCCCCCCCeEEEEeecCchh------hhcccCCcce
Q 009411 224 KLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDV------LSSKMDCQNN 297 (535)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTtR~~~v------~~~~~~~~~~ 297 (535)
+..... ........+.......++.+|++| ...+....+...+.....++|.||..... ..........
T Consensus 245 --g~~~~G-~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~ 319 (758)
T 3pxi_A 245 --GTKYRG-EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQP 319 (758)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEE
T ss_pred --cccccc-hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCcE
Confidence 000000 011123344555544567899999 22222222322222445667766665441 1111122357
Q ss_pred EecCCCCHHHHHHHHHHHhC
Q 009411 298 FLIGVLNESEARDLFKKLVG 317 (535)
Q Consensus 298 ~~l~~L~~~ea~~Lf~~~~~ 317 (535)
+.+++.+.++..+++.....
T Consensus 320 i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 320 IQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp EECCCCCHHHHHHHHHHTTT
T ss_pred EEeCCCCHHHHHHHHHHHHH
Confidence 99999999999999997653
No 56
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.02 E-value=0.00014 Score=68.78 Aligned_cols=178 Identities=20% Similarity=0.233 Sum_probs=95.4
Q ss_pred CCcccccccHHHHHHHHHH---hcC---------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 146 KGYEAFESRMSTLNDVINA---LKN---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~---L~~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
.....++|.+..++++.+. +.. ...+-+.|+|++|+||||||+.+++.... .| +.++.+.-.+
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~~---~~i~~~~~~~ 83 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--PF---FTISGSDFVE 83 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC--CE---EEECSCSSTT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--CE---EEEeHHHHHH
Confidence 3456678887766655443 322 12345889999999999999999987642 12 3332221110
Q ss_pred HHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc----------------ccccc----CCCCCC
Q 009411 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------DLENV----GIPFGV 273 (535)
Q Consensus 214 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------------~~~~~----~~~~~~ 273 (535)
.... ........+.+......+.++++|+++... ....+ ......
T Consensus 84 --------------~~~~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 --------------MFVG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp --------------SCCC-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred --------------Hhhh-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 0001 112233344444444567899999984210 00111 011113
Q ss_pred CCeEEEEeecCchhh-hccc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChHHHHH
Q 009411 274 RGCRVLMTARSQDVL-SSKM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRG-LPIAIVT 345 (535)
Q Consensus 274 ~gs~ilvTtR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~G-lPLai~~ 345 (535)
.+..||.||...... .... .....+.++..+.++-.+++..........++. ....++..+.| .+--|..
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHHHH
Confidence 456677777665422 1111 123467888888888888888776432211111 13456777777 6644443
No 57
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.98 E-value=8.6e-05 Score=74.99 Aligned_cols=169 Identities=18% Similarity=0.231 Sum_probs=93.8
Q ss_pred CcccccccHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 147 GYEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
.+.++.|-++.+++|.+.+. -...+-|.++|++|+|||+||+++++..... .+.++.+.-.+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~ 244 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH 244 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc
Confidence 45667788887777766543 1235678899999999999999999987632 23344333211
Q ss_pred HHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc------------c----cccc----CCCCCC
Q 009411 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL------------D----LENV----GIPFGV 273 (535)
Q Consensus 214 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~----~~~~----~~~~~~ 273 (535)
... ......+..++.......+++|++|+++... . +..+ ......
T Consensus 245 --------------~~~-Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 245 --------------KYL-GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp --------------SSC-SHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred --------------ccc-chhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 000 0112233444444444678999999985210 0 1111 011124
Q ss_pred CCeEEEEeecCchhhh-cccC---CcceEecCCC-CHHHHHHHHHHHhCCCC--CCchhHHHHHHHHHHcCCC
Q 009411 274 RGCRVLMTARSQDVLS-SKMD---CQNNFLIGVL-NESEARDLFKKLVGDKI--ENNDLKSLAMNIVKACRGL 339 (535)
Q Consensus 274 ~gs~ilvTtR~~~v~~-~~~~---~~~~~~l~~L-~~~ea~~Lf~~~~~~~~--~~~~l~~~~~~i~~~~~Gl 339 (535)
.+..||.||....... .... -...+.+..+ +.++-..+|+.+..... ...+ ...|++.+.|.
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCC
Confidence 4566777886654331 1111 2245777655 45555667766653221 1222 34677777775
No 58
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.93 E-value=9.7e-06 Score=72.23 Aligned_cols=115 Identities=15% Similarity=0.120 Sum_probs=64.0
Q ss_pred cHHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCcc
Q 009411 154 RMSTLNDVINALKN---PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY 230 (535)
Q Consensus 154 R~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 230 (535)
....++.+.+++.+ .....+.|+|++|+|||||++.+++.......+. +++++ ..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH
Confidence 44455555555542 2357899999999999999999998865221121 23333 34455544433321111
Q ss_pred CCCchHHHHHHHHHHhcCCcEEEEEeCCCC--cccccc--cCCCC---CCCCeEEEEeecCc
Q 009411 231 EESESGRARKLCERLKKEKKILVILDDIWT--NLDLEN--VGIPF---GVRGCRVLMTARSQ 285 (535)
Q Consensus 231 ~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~--~~~~~~--~~~~~---~~~gs~ilvTtR~~ 285 (535)
. .+...+. +.-+|||||++. .+.|.. +...+ ...|..+|+||...
T Consensus 92 ----~----~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 ----T----KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp ----S----HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ----H----HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 0 2333343 457999999973 233321 11111 13567788888765
No 59
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.90 E-value=2.2e-05 Score=71.25 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCC----CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC
Q 009411 156 STLNDVINALKNP----DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE 231 (535)
Q Consensus 156 ~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~ 231 (535)
..++.+..++... ..+.+.|+|++|+|||+||+.+++..... ...++|++++ ++...+......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~---- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQD---- 103 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhcc----
Confidence 3455555555522 12688999999999999999999887543 3345666542 444444332211
Q ss_pred CCchHHHHHHHHHHhcCCcEEEEEeCCCCc--cccccc--CC-CCC---CCCeEEEEeecCc
Q 009411 232 ESESGRARKLCERLKKEKKILVILDDIWTN--LDLENV--GI-PFG---VRGCRVLMTARSQ 285 (535)
Q Consensus 232 ~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~~--~~-~~~---~~gs~ilvTtR~~ 285 (535)
.. ...+...+.. .-+|||||++.. ..|..- .. .+. ..+.++|+||...
T Consensus 104 ~~----~~~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 104 QT----MNEKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp CC----CHHHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred ch----HHHHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 11 1223344432 249999999643 333221 11 111 2456788888754
No 60
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.83 E-value=0.00026 Score=72.70 Aligned_cols=198 Identities=19% Similarity=0.273 Sum_probs=108.0
Q ss_pred CcccccccHHHHHHHHHH---hcCC---------CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH
Q 009411 147 GYEAFESRMSTLNDVINA---LKNP---------DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~---L~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 214 (535)
.+..+.|.++.++++.+. +... -.+-|.|+|++|+|||+||+.+++..... | +.++.+.-...
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~--f---~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP--F---FHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC--E---EEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC--e---eeCCHHHHHHH
Confidence 345678887766555543 3221 13458899999999999999999876432 2 33443322110
Q ss_pred HHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc----------------cccccCC---CCC-CC
Q 009411 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------DLENVGI---PFG-VR 274 (535)
Q Consensus 215 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------------~~~~~~~---~~~-~~ 274 (535)
... ........+........+.+|+||+++... .+..+.. .+. ..
T Consensus 89 --------------~~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 --------------FVG-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp --------------CTT-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred --------------Hhc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 000 011223344444444578999999995421 0111111 011 34
Q ss_pred CeEEEEeecCchhhhc-ccC---CcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH-HHHHHHH-
Q 009411 275 GCRVLMTARSQDVLSS-KMD---CQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI-AIVTIAR- 348 (535)
Q Consensus 275 gs~ilvTtR~~~v~~~-~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~~~- 348 (535)
+..||.||........ ... ....+.++..+.++-.+++..++......++. ....|++.+.|..- -|..+..
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~sgadL~~lv~~ 231 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFVGADLENLVNE 231 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCcHHHHHHHHHH
Confidence 6677777777654321 111 22378888888888888888777532211111 13457888888762 2322211
Q ss_pred --Hh--h-cC---CHHHHHHHHHHhc
Q 009411 349 --AL--R-NK---NTFEWKSALRELT 366 (535)
Q Consensus 349 --~L--~-~~---~~~~w~~~l~~l~ 366 (535)
.+ + +. +...+...+++..
T Consensus 232 Aal~A~~~~~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 232 AALLAAREGRDKITMKDFEEAIDRVI 257 (476)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCeecHHHHHHHHHHHh
Confidence 11 1 21 6677777777653
No 61
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.83 E-value=0.00023 Score=73.54 Aligned_cols=177 Identities=15% Similarity=0.189 Sum_probs=99.8
Q ss_pred cccccccHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH
Q 009411 148 YEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 214 (535)
+..++|.+..+++|.+.+. ....+-|.|+|++|+|||++|+.+++.... . .+.++.+
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~--~---fv~vn~~----- 272 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--F---FFLINGP----- 272 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS--E---EEEEEHH-----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC--C---EEEEEch-----
Confidence 4568899988888877664 234467889999999999999999887632 1 2333321
Q ss_pred HHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc-------------c----ccccCCCCCCCCeE
Q 009411 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL-------------D----LENVGIPFGVRGCR 277 (535)
Q Consensus 215 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~-------------~----~~~~~~~~~~~gs~ 277 (535)
++. ..+ . .........+......+++.+|+||+++... . +..+.......+..
T Consensus 273 -~l~----~~~----~-g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 273 -EIM----SKL----A-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp -HHH----TSC----T-THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred -Hhh----hhh----c-chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 111 000 0 0111223334444444678999999984210 0 11111011134566
Q ss_pred EEEeecCchhhh-ccc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC-hHHHHHH
Q 009411 278 VLMTARSQDVLS-SKM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL-PIAIVTI 346 (535)
Q Consensus 278 ilvTtR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~Gl-PLai~~~ 346 (535)
||.||....... ... .....+.+...+.++-.++|...+.......+. ...++++.+.|. +-.+..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~--~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTC--CHHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchh--hHHHHHHHccCCcHHHHHHH
Confidence 777776653221 111 222468999999999999999887532211110 134567777774 4444433
No 62
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=0.00013 Score=70.66 Aligned_cols=141 Identities=16% Similarity=0.074 Sum_probs=86.1
Q ss_pred cHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccc--cCcceEEEEEeCC-CCCHHHHHHHHHHHhCCCcc
Q 009411 154 RMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKAD--KLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFY 230 (535)
Q Consensus 154 R~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~--~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~ 230 (535)
-++.++.|...+..++.+...++|++|+||||+|..+++..... .+.+ ..++..+. ...+.+ .+++.+.+...+.
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~~~~~p~ 79 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDFLNYSPE 79 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHHHTSCCS
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHHHhhccc
Confidence 34556777777776667889999999999999999998753211 2333 34454432 233322 2334444332111
Q ss_pred CCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccc----cCCCCCCCCeEEEEeecCc-hhhhcccCCcceEecCCC
Q 009411 231 EESESGRARKLCERLKKEKKILVILDDIWTNL--DLEN----VGIPFGVRGCRVLMTARSQ-DVLSSKMDCQNNFLIGVL 303 (535)
Q Consensus 231 ~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~----~~~~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~l~~L 303 (535)
.+++-++|+|+++... ..+. +..| .+.+.+|++|.+. .+....... .+++.++
T Consensus 80 ----------------~~~~kvviIdead~lt~~a~naLLk~LEep--~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l 139 (305)
T 2gno_A 80 ----------------LYTRKYVIVHDCERMTQQAANAFLKALEEP--PEYAVIVLNTRRWHYLLPTIKSR--VFRVVVN 139 (305)
T ss_dssp ----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSC--CTTEEEEEEESCGGGSCHHHHTT--SEEEECC
T ss_pred ----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCC--CCCeEEEEEECChHhChHHHHce--eEeCCCC
Confidence 1356799999997542 2222 2222 4567777776554 332222222 9999999
Q ss_pred CHHHHHHHHHHHh
Q 009411 304 NESEARDLFKKLV 316 (535)
Q Consensus 304 ~~~ea~~Lf~~~~ 316 (535)
+.++..+.+.+.+
T Consensus 140 ~~~~i~~~L~~~~ 152 (305)
T 2gno_A 140 VPKEFRDLVKEKI 152 (305)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998876
No 63
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.77 E-value=0.0018 Score=63.52 Aligned_cols=173 Identities=17% Similarity=0.160 Sum_probs=92.8
Q ss_pred CCcccccccHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHH
Q 009411 146 KGYEAFESRMSTLNDVINALK-----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 220 (535)
.....++|.+..++.+...+. +.....+.|+|++|+||||||+.+++..... |. ..+.+-.....+
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~~---~~sg~~~~~~~~---- 92 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--IH---VTSGPVLVKQGD---- 92 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--EE---EEETTTCCSHHH----
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EE---EEechHhcCHHH----
Confidence 345567888877777666554 2344679999999999999999999886432 11 111111111111
Q ss_pred HHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccc-------CCC----CC---------CCCeEE
Q 009411 221 IADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENV-------GIP----FG---------VRGCRV 278 (535)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~~-------~~~----~~---------~~gs~i 278 (535)
...+...+ .++.++++|++.... ..+.+ ... .. .+...+
T Consensus 93 -----------------l~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 93 -----------------MAAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp -----------------HHHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred -----------------HHHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 11111122 134567778775321 11100 000 00 011222
Q ss_pred E-EeecCchhhhccc-CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 009411 279 L-MTARSQDVLSSKM-DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIA 347 (535)
Q Consensus 279 l-vTtR~~~v~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 347 (535)
+ .|++...+..... .....+.+++.+.++-.+++.+.+...... -..+.+..|++.++|.|-.+..+.
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~-~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE-IEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHhcCCChHHHHHHH
Confidence 2 3444333221111 112358899999999999999876321111 113468899999999996554433
No 64
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.74 E-value=2.1e-05 Score=74.91 Aligned_cols=150 Identities=20% Similarity=0.241 Sum_probs=78.6
Q ss_pred cccccccHHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHH
Q 009411 148 YEAFESRMSTLNDVINALK---N---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK 215 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~ 215 (535)
...++|.+..++.+.+.+. . ...+-+.|+|++|+|||+||+.+++..... |- .+..+.-.+.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~~---~v~~~~~~~~- 83 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP--FF---SMGGSSFIEM- 83 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC--CC---CCCSCTTTTS-
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--EE---EechHHHHHh-
Confidence 4567777766655555432 1 123447799999999999999999876532 21 1111110000
Q ss_pred HHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc-----------------cccccCCCCC-----C
Q 009411 216 KIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL-----------------DLENVGIPFG-----V 273 (535)
Q Consensus 216 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~-----------------~~~~~~~~~~-----~ 273 (535)
..+.. .. ....+.......++.+|+||+++... .+..+...+. .
T Consensus 84 --------~~~~~--~~----~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 84 --------FVGLG--AS----RVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp --------CSSSC--SS----SSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred --------hcchH--HH----HHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 00000 00 01122222222456899999995421 1122211111 1
Q ss_pred CCeEEEEeecCchhhh-cccC---CcceEecCCCCHHHHHHHHHHHhC
Q 009411 274 RGCRVLMTARSQDVLS-SKMD---CQNNFLIGVLNESEARDLFKKLVG 317 (535)
Q Consensus 274 ~gs~ilvTtR~~~v~~-~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (535)
....||.||....... .... ....+.++..+.++-.+++...+.
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 2355777776654221 1111 224678888888888888887764
No 65
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.70 E-value=0.00013 Score=70.71 Aligned_cols=46 Identities=28% Similarity=0.313 Sum_probs=36.8
Q ss_pred cccccHHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 150 AFESRMSTLNDVINALKN--------------PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.++|++..++.+...+.. .....+.|+|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 478998888888776643 2345688999999999999999998764
No 66
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.57 E-value=0.00012 Score=71.15 Aligned_cols=105 Identities=15% Similarity=0.187 Sum_probs=59.2
Q ss_pred cccccHHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHH
Q 009411 150 AFESRMSTLNDVINALKNP---------DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 220 (535)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++..... -...+.++.+...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeecccccccc-cHHH
Confidence 4668888888777766521 13578999999999999999999876432 1224455554432211 1111
Q ss_pred HHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 009411 221 IADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN 261 (535)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 261 (535)
.++........ .....+...+......+|+||+++..
T Consensus 95 ---l~g~~~~~~~~-~~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 95 ---LIGAPPGYVGY-EEGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp ---HHCCCTTSTTT-TTCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred ---hcCCCCccccc-cccchHHHHHHhCCCeEEEEeChhhc
Confidence 22322111110 00012333443334579999999754
No 67
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.52 E-value=0.00039 Score=75.64 Aligned_cols=169 Identities=14% Similarity=0.232 Sum_probs=95.0
Q ss_pred cccccccHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH
Q 009411 148 YEAFESRMSTLNDVINALK----N---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 214 (535)
+..+.|-++.+++|.+.+. . ...+-|.++|++|+|||+||+.+++..... .+.++.+.
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~---- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE---- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHH----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHH----
Confidence 3445666666655555432 1 235678999999999999999999876532 23343211
Q ss_pred HHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--------c-----ccccCC---CCC-CCCeE
Q 009411 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--------D-----LENVGI---PFG-VRGCR 277 (535)
Q Consensus 215 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--------~-----~~~~~~---~~~-~~gs~ 277 (535)
+. + .. ..........+.+......+++|++|+++... . ...+.. .+. ..+..
T Consensus 274 --l~-------s-k~-~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 --IM-------S-KL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp --HH-------S-SC-TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred --hh-------c-cc-chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 11 0 00 01112234445555555678999999986421 0 111110 011 23445
Q ss_pred EEEeecCchhhhccc----CCcceEecCCCCHHHHHHHHHHHhCCCC--CCchhHHHHHHHHHHcCCCh
Q 009411 278 VLMTARSQDVLSSKM----DCQNNFLIGVLNESEARDLFKKLVGDKI--ENNDLKSLAMNIVKACRGLP 340 (535)
Q Consensus 278 ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~--~~~~l~~~~~~i~~~~~GlP 340 (535)
||.||.......... .-...+.++..+.++-.++|+.+..... ...+ ...|++++.|..
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 666666544321111 2235788999999999999988775322 1222 456788888764
No 68
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.47 E-value=0.0001 Score=63.03 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=34.8
Q ss_pred cccccHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 150 AFESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.++|+...+.++.+.+. .....-|.|+|++|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 46788888888887764 22334567999999999999999988653
No 69
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.43 E-value=0.0015 Score=67.10 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=36.4
Q ss_pred cccccccHHHHHHHHHH---hcCC--CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 148 YEAFESRMSTLNDVINA---LKNP--DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~---L~~~--~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...++|.++.++.+..+ +... ..+-+.++|++|+|||+||+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 46788998887755443 3332 235788999999999999999998765
No 70
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.39 E-value=0.0017 Score=60.98 Aligned_cols=147 Identities=20% Similarity=0.256 Sum_probs=76.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcE
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKI 251 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 251 (535)
-+.|+|++|+|||||++.++..... +.+.++.. ++. ... ..........+.+......+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~~------~~~----~~~-----~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS------DFV----EMF-----VGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH------HHH----HSC-----TTHHHHHHHHHHHHHTTSSSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeHH------HHH----HHH-----hhHHHHHHHHHHHHHHhcCCe
Confidence 3889999999999999999987642 22333211 111 000 000111233344444333568
Q ss_pred EEEEeCCCCcc------------c----ccccCCC---CC-CCCeEEEEeecCchhhhcc-c---CCcceEecCCCCHHH
Q 009411 252 LVILDDIWTNL------------D----LENVGIP---FG-VRGCRVLMTARSQDVLSSK-M---DCQNNFLIGVLNESE 307 (535)
Q Consensus 252 LlVlDdv~~~~------------~----~~~~~~~---~~-~~gs~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e 307 (535)
++++|+++... . ...+... .. .....++.||......... . .-...+.++..+.++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 99999984210 0 1111000 01 2234455566665543211 1 223478889899988
Q ss_pred HHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 009411 308 ARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (535)
Q Consensus 308 a~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP 340 (535)
-.++++..+......++. ....|++.+.|.-
T Consensus 191 r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 191 REQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 888888766432111110 1335677777653
No 71
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.33 E-value=0.0039 Score=59.27 Aligned_cols=148 Identities=13% Similarity=0.220 Sum_probs=81.2
Q ss_pred cccccccHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC-
Q 009411 148 YEAFESRMSTLNDVINALK----N---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD- 213 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~- 213 (535)
...+.|-++.++.|.+.+. . .-.+-+.|+|++|+||||||+.++..... ..+++....-.+
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM 83 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh
Confidence 4456676666666655432 0 11123899999999999999999987642 234444322111
Q ss_pred -HHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc---------c----cccCCCC----CCCC
Q 009411 214 -VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD---------L----ENVGIPF----GVRG 275 (535)
Q Consensus 214 -~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~---------~----~~~~~~~----~~~g 275 (535)
..+ ....+..+.+......++++++|+++.... . ..+...+ ....
T Consensus 84 ~~~~-----------------~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 84 YVGE-----------------SERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp TTHH-----------------HHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred hhhH-----------------HHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 000 011223344433234678999999964210 0 0000000 1234
Q ss_pred eEEEEeecCchhhhccc----CCcceEecCCCCHHHHHHHHHHHhC
Q 009411 276 CRVLMTARSQDVLSSKM----DCQNNFLIGVLNESEARDLFKKLVG 317 (535)
Q Consensus 276 s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (535)
.-++.+|....+..... .-...+.++..+.++-.++|+....
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 55666777765542111 2335788899999999999988764
No 72
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.29 E-value=0.0028 Score=60.35 Aligned_cols=173 Identities=18% Similarity=0.218 Sum_probs=88.9
Q ss_pred CCcccccccHHHHHHHHHH---hcC---------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 146 KGYEAFESRMSTLNDVINA---LKN---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 146 ~~~~~~~gR~~~~~~l~~~---L~~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
.....++|.+..+.++.+. +.. .-.+-+.|+|++|+|||||++.++..... ..+.++..
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~---- 107 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS---- 107 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC-----CEEEecHH----
Confidence 3355677877665554433 211 01123889999999999999999987641 22333211
Q ss_pred HHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCc------------cc----ccccCCCC---C-C
Q 009411 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN------------LD----LENVGIPF---G-V 273 (535)
Q Consensus 214 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~------------~~----~~~~~~~~---~-~ 273 (535)
++.. .. ..........+.+......+.++++|+++.. .. +..+...+ . .
T Consensus 108 --~~~~----~~-----~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 108 --DFVE----MF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp --HHHH----ST-----TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred --HHHH----HH-----hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 1110 00 0001112233444443335689999998421 00 11110000 1 2
Q ss_pred CCeEEEEeecCchhhhcc-c---CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 009411 274 RGCRVLMTARSQDVLSSK-M---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (535)
Q Consensus 274 ~gs~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP 340 (535)
....++.||......... . .-...+.++..+.++-.+++...+......++. ....++..+.|..
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 234455566665443111 1 233578899999998888888776432111111 1335677777754
No 73
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.18 E-value=0.002 Score=67.68 Aligned_cols=155 Identities=19% Similarity=0.188 Sum_probs=75.1
Q ss_pred cccccHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHH
Q 009411 150 AFESRMSTLNDVINALK------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 223 (535)
.++|-++....+.+.+. ......+.++|++|+||||||+.++...... | ..++++...+...+......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~---~~i~~~~~~~~~~~~g~~~~ 156 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK--F---VRISLGGVRDESEIRGHRRT 156 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE--E---EEECCCC-------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC--e---EEEEecccchhhhhhhHHHH
Confidence 35666665555544332 2345689999999999999999999876421 2 12222222221121111111
Q ss_pred HhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc------ccccCCCC--------C---------CCCeEEEE
Q 009411 224 KLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD------LENVGIPF--------G---------VRGCRVLM 280 (535)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~------~~~~~~~~--------~---------~~gs~ilv 280 (535)
..+.. ............. ..-+++||+++.... ...+...+ . .....||.
T Consensus 157 ~ig~~------~~~~~~~~~~a~~-~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ 229 (543)
T 3m6a_A 157 YVGAM------PGRIIQGMKKAGK-LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIA 229 (543)
T ss_dssp -------------CHHHHHHTTCS-SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEE
T ss_pred HhccC------chHHHHHHHHhhc-cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEe
Confidence 11110 0011112222221 234888999875321 11111000 0 13456666
Q ss_pred eecCchhh-hcccCCcceEecCCCCHHHHHHHHHHHh
Q 009411 281 TARSQDVL-SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (535)
Q Consensus 281 TtR~~~v~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (535)
||...... .........+.+.+++.++-..++..+.
T Consensus 230 ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 230 TANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp ECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred ccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 66654322 1111222478999999999988887754
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.16 E-value=0.0011 Score=64.30 Aligned_cols=46 Identities=13% Similarity=0.283 Sum_probs=35.8
Q ss_pred cccccHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 150 AFESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.++|+...+.++.+.+. ......|.|+|.+|+|||++|+.+++...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 46788888888777665 23345677999999999999999998653
No 75
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.12 E-value=0.004 Score=64.21 Aligned_cols=169 Identities=18% Similarity=0.199 Sum_probs=90.1
Q ss_pred CcccccccHHHHHHHHH---HhcCC---------CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH
Q 009411 147 GYEAFESRMSTLNDVIN---ALKNP---------DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~---~L~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 214 (535)
.+..+.|.++.+.++.+ .+.+. -.+-+.|+|++|+|||+||+.++..... ..+.++.+.-...
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVEM 103 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTSS
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHHHh
Confidence 45567888776555544 33221 1234899999999999999999987642 2334443221100
Q ss_pred HHHHHHHHHHhCCCccCCCchHHHHHHHHHHh---cCCcEEEEEeCCCCcc------------c----ccccC---CCCC
Q 009411 215 KKIQGQIADKLGLKFYEESESGRARKLCERLK---KEKKILVILDDIWTNL------------D----LENVG---IPFG 272 (535)
Q Consensus 215 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~---~~~~~LlVlDdv~~~~------------~----~~~~~---~~~~ 272 (535)
........+...+. ...+.++++|+++... . +..+. ....
T Consensus 104 ------------------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 104 ------------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp ------------------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred ------------------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 00011111222222 1245899999995321 0 11111 0011
Q ss_pred -CCCeEEEEeecCchhhhc-cc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 009411 273 -VRGCRVLMTARSQDVLSS-KM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (535)
Q Consensus 273 -~~gs~ilvTtR~~~v~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlP 340 (535)
..+..|+.||........ .. .....+.++..+.++-.+++..++......++. ....|++.+.|+.
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCC
Confidence 234556667766654321 11 123478899999998888988776432111110 1345777787765
No 76
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.07 E-value=0.0041 Score=57.62 Aligned_cols=89 Identities=13% Similarity=0.139 Sum_probs=54.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccc----CcceEEEEEeCCCCCHHHHHHHHHHHhCCCcc----------CCCch
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADK----LFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY----------EESES 235 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----------~~~~~ 235 (535)
..++.|.|++|+|||||+..++....... .-..++|++....+....+ ..++..++.... .....
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 36899999999999999999988532211 1356888887765554433 344555554321 11111
Q ss_pred H---HHHHHHHHHhcCCcEEEEEeCCC
Q 009411 236 G---RARKLCERLKKEKKILVILDDIW 259 (535)
Q Consensus 236 ~---~~~~l~~~l~~~~~~LlVlDdv~ 259 (535)
+ ....+...+...+.-+||+|.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 1 12234444444567899999874
No 77
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.07 E-value=0.0035 Score=60.11 Aligned_cols=84 Identities=8% Similarity=0.046 Sum_probs=56.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC-----CCchHHH-HHHHHHH
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE-----ESESGRA-RKLCERL 245 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~l~~~l 245 (535)
++-|.|++|+|||||+.+++.....+..=..++|++....++.. .+++++.+.+. ....+.+ -.+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68899999999999999988765432112458899887777653 36778776543 1222332 3334443
Q ss_pred ---hcCCcEEEEEeCCCC
Q 009411 246 ---KKEKKILVILDDIWT 260 (535)
Q Consensus 246 ---~~~~~~LlVlDdv~~ 260 (535)
..++.-|||+|-+..
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 456788999999854
No 78
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.06 E-value=0.0012 Score=72.57 Aligned_cols=146 Identities=16% Similarity=0.239 Sum_probs=79.2
Q ss_pred ccccccHHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHH
Q 009411 149 EAFESRMSTLNDVINALKN-------P--DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 219 (535)
..++|.+..++.+...+.. . ....+.++|++|+|||++|+.+++..... -...+.++.+.-....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccc----
Confidence 3578999888888777651 1 12368999999999999999999886321 2234455554322100
Q ss_pred HHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccc-------CCC------CCCCCeEEEEeecC
Q 009411 220 QIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENV-------GIP------FGVRGCRVLMTARS 284 (535)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~~-------~~~------~~~~gs~ilvTtR~ 284 (535)
... ...+...+......+|+||++.... ....+ ... ....+.+||+||..
T Consensus 565 ----------~~~-----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 ----------STS-----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ----------CCC--------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ----------ccc-----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 000 1111222222344699999996542 11111 000 01345688888874
Q ss_pred ch-------------hhhcccC-CcceEecCCCCHHHHHHHHHHH
Q 009411 285 QD-------------VLSSKMD-CQNNFLIGVLNESEARDLFKKL 315 (535)
Q Consensus 285 ~~-------------v~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~ 315 (535)
.. ....... -...+.+.+++.++-..++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 21 0000111 1247888888888777776654
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.03 E-value=0.00021 Score=60.91 Aligned_cols=45 Identities=7% Similarity=0.047 Sum_probs=32.0
Q ss_pred cccccHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 150 AFESRMSTLNDVINALKN--PDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.++|+...++++.+.+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 467888887777776541 223457799999999999999987654
No 80
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.97 E-value=0.00058 Score=66.27 Aligned_cols=53 Identities=17% Similarity=0.331 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHHHhc-cccCcceEEEEEe
Q 009411 154 RMSTLNDVINALKNP---DVHMIGAYGMAGVGKTMLVKEVARQAK-ADKLFDEVVYAEV 208 (535)
Q Consensus 154 R~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~~~~~~~-~~~~f~~~~wv~v 208 (535)
+...++.+.+++... ....+.|+|++|+|||+||..+++... ..+ ..+.++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g--~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG--VSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSC--CCEEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEH
Confidence 344555555665531 246788999999999999999999766 432 23455544
No 81
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.96 E-value=0.0012 Score=63.54 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=42.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEe--CCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcC
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV--SQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (535)
+++.|+|++|+|||+||.+++.... ..++|+++ .+..+. ...........+.+.+..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~~- 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAMLQ- 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHHH-
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHhh-
Confidence 5678999999999999999987621 12456666 222110 002223344455566654
Q ss_pred CcEEEEEeCCCC
Q 009411 249 KKILVILDDIWT 260 (535)
Q Consensus 249 ~~~LlVlDdv~~ 260 (535)
.+ +||+|++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 34 999999854
No 82
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.95 E-value=0.0017 Score=71.34 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=35.4
Q ss_pred cccccHHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 150 AFESRMSTLNDVINALKN---------PDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 467888888877776641 123478999999999999999999877
No 83
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.89 E-value=0.03 Score=56.52 Aligned_cols=29 Identities=28% Similarity=0.372 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
...+|.++|.+|+||||++..++.....+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999998876543
No 84
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.89 E-value=0.0063 Score=55.40 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=33.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQ 218 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 218 (535)
..++.|.|++|+|||||+..++. .. -..++|++.....+...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHH
Confidence 46899999999999999999988 21 2467888877655554443
No 85
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.89 E-value=0.0033 Score=69.27 Aligned_cols=150 Identities=15% Similarity=0.220 Sum_probs=83.4
Q ss_pred cccccccHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH
Q 009411 148 YEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 214 (535)
+..++|.+..+++|.+++. -.....|.|+|++|+||||||+.++..... .| +.++.+.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~--~~---i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--FF---FLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC--EE---EEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--cE---EEEEchH----
Confidence 4567888887777776653 123457899999999999999999887542 12 3333211
Q ss_pred HHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------ccc----cCCCCCCCCeE
Q 009411 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD-------------LEN----VGIPFGVRGCR 277 (535)
Q Consensus 215 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~----~~~~~~~~gs~ 277 (535)
+..... .........+.+......+.++++|+++.... ... +.......+..
T Consensus 274 ----------l~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 ----------IMSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ----------HSSSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred ----------hhhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 000000 01112233344444334678999999843210 011 11111123455
Q ss_pred EEEeecCchhhhccc----CCcceEecCCCCHHHHHHHHHHHhC
Q 009411 278 VLMTARSQDVLSSKM----DCQNNFLIGVLNESEARDLFKKLVG 317 (535)
Q Consensus 278 ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (535)
+|.||.......... .....+.+...+.++-.+++...+.
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 666665543221111 1224578888899999999987764
No 86
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.87 E-value=0.0023 Score=58.89 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~ 210 (535)
..++.|.|++|+|||||++.++...... -..++|+....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE 61 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc
Confidence 3689999999999999999998664422 12466665443
No 87
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.87 E-value=0.0046 Score=60.83 Aligned_cols=84 Identities=15% Similarity=0.231 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC------CCchHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE------ESESGRARKLCE 243 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 243 (535)
..++.|.|++|+|||||+.+++......+ ..++|++....++.. .++.++..... ....+....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 36999999999999999999998754321 347788877666643 45666655332 112222223333
Q ss_pred HHhcCCcEEEEEeCCCC
Q 009411 244 RLKKEKKILVILDDIWT 260 (535)
Q Consensus 244 ~l~~~~~~LlVlDdv~~ 260 (535)
.+...+.-++|+|.+..
T Consensus 134 l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHTSCCSEEEEECTTT
T ss_pred HhhhcCCCeEEehHhhh
Confidence 33334567999999843
No 88
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.82 E-value=0.02 Score=57.82 Aligned_cols=29 Identities=28% Similarity=0.221 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
...+|.++|++|+||||++..++.....+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999998876543
No 89
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.80 E-value=0.0073 Score=59.39 Aligned_cols=58 Identities=17% Similarity=0.320 Sum_probs=41.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccc----CcceEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADK----LFDEVVYAEVSQRPDVKKIQGQIADKLGLK 228 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 228 (535)
..++.|.|++|+||||||..++....... .-..++|++....++...+. .++..++..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~ 183 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVD 183 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCC
Confidence 47899999999999999999987643211 12468899988876665543 445556544
No 90
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.77 E-value=0.001 Score=64.01 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+.+.++|++|+|||+||+.+++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46788999999999999999999875
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.77 E-value=0.0016 Score=55.65 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=32.3
Q ss_pred HHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC
Q 009411 162 INALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (535)
Q Consensus 162 ~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~ 210 (535)
+..|.+-....+.|+|+.|+|||||++.+++.....+ + .++++....
T Consensus 28 ~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g-~-~~~~~~~~~ 74 (149)
T 2kjq_A 28 VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALEAG-K-NAAYIDAAS 74 (149)
T ss_dssp HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHTTT-C-CEEEEETTT
T ss_pred HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHhcC-C-cEEEEcHHH
Confidence 3334332557899999999999999999998765321 1 256665443
No 92
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.70 E-value=0.0077 Score=58.68 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccc---------Cc-----ceEEEEEeCCCCCHHHHHHHHHHHhCCCcc-----
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADK---------LF-----DEVVYAEVSQRPDVKKIQGQIADKLGLKFY----- 230 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~---------~f-----~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----- 230 (535)
..++.|.|.+|+|||+||.+++....... .. ..++|++....++..++. +++..++.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhcC
Confidence 47899999999999999999987632110 01 468899988877666555 34556655431
Q ss_pred ----CCCchH----HHHHHHHHHhc-CCcEEEEEeCCC
Q 009411 231 ----EESESG----RARKLCERLKK-EKKILVILDDIW 259 (535)
Q Consensus 231 ----~~~~~~----~~~~l~~~l~~-~~~~LlVlDdv~ 259 (535)
.....+ ....+...+.. .+.-+||+|.+.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 111111 22334444443 455688888874
No 93
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.65 E-value=0.0097 Score=58.02 Aligned_cols=89 Identities=21% Similarity=0.296 Sum_probs=55.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccC----cceEEEEEeCCCCCHHHHHHHHHHHhCCCcc---------CCCchH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKL----FDEVVYAEVSQRPDVKKIQGQIADKLGLKFY---------EESESG 236 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 236 (535)
..++.|.|++|+|||+||.+++........ -..++|++....++..++. +++..++.... .....+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 468999999999999999999876432110 2468899888876665544 44566655431 011111
Q ss_pred ----HHHHHHHHHhc-CCcEEEEEeCCC
Q 009411 237 ----RARKLCERLKK-EKKILVILDDIW 259 (535)
Q Consensus 237 ----~~~~l~~~l~~-~~~~LlVlDdv~ 259 (535)
....+...+.. .+.-+||+|.+.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 22334444443 456788888874
No 94
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.64 E-value=0.0083 Score=59.37 Aligned_cols=83 Identities=22% Similarity=0.261 Sum_probs=52.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC-----CCchHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE-----ESESGRARKLCER 244 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 244 (535)
..++.|.|.+|+||||||..++...... -..++|++....++.. .+..++.+... ....+....+.+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 3688999999999999999998765432 2368899988766543 24556654321 1122222233333
Q ss_pred H-hcCCcEEEEEeCCC
Q 009411 245 L-KKEKKILVILDDIW 259 (535)
Q Consensus 245 l-~~~~~~LlVlDdv~ 259 (535)
+ ...+.-+||+|.+.
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 3 33455699999984
No 95
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.60 E-value=0.0084 Score=59.02 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC-----CCchHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE-----ESESGRARKLCER 244 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 244 (535)
..++.|.|++|+||||||.+++...... =..++|++....++.. .++.++..... ....+....+...
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4789999999999999999998765432 2357899887766543 35556654322 1122222233333
Q ss_pred H-hcCCcEEEEEeCCC
Q 009411 245 L-KKEKKILVILDDIW 259 (535)
Q Consensus 245 l-~~~~~~LlVlDdv~ 259 (535)
+ ...+.-+||+|.+.
T Consensus 134 l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHTTTCCSEEEEECGG
T ss_pred HHhcCCCCEEEEcChH
Confidence 3 33456799999984
No 96
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.56 E-value=0.088 Score=53.26 Aligned_cols=89 Identities=17% Similarity=0.259 Sum_probs=48.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeC-CCCCHHHHHHHHHHHhCCCccC----CCchHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVS-QRPDVKKIQGQIADKLGLKFYE----ESESGRARKLCE 243 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~ 243 (535)
..++|.++|.+|+||||++..++.....+... .+.-++.. +.+...+.+.......+.+.-. .+..........
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 46799999999999999999999877643112 24445543 2333444444444444433211 122222234444
Q ss_pred HHhcCCcEEEEEeCC
Q 009411 244 RLKKEKKILVILDDI 258 (535)
Q Consensus 244 ~l~~~~~~LlVlDdv 258 (535)
.+....-=++|+|-.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 444222236677775
No 97
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.54 E-value=0.0092 Score=58.84 Aligned_cols=83 Identities=20% Similarity=0.369 Sum_probs=52.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC-----CCchHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE-----ESESGRARKLCER 244 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 244 (535)
.+++.|.|.+|+||||||.+++......+ ..++|++....++.. .+..++...+. ....+....+.+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 46899999999999999999987754332 358899987776643 24556554322 1122223333333
Q ss_pred H-hcCCcEEEEEeCCC
Q 009411 245 L-KKEKKILVILDDIW 259 (535)
Q Consensus 245 l-~~~~~~LlVlDdv~ 259 (535)
+ ...+.-+||+|.+.
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 3 23455699999973
No 98
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.52 E-value=0.0082 Score=60.12 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcccc----CcceEEEEEeCCCCCHHHHHHHHHHHhCCCcc---------CCCch-
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADK----LFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY---------EESES- 235 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---------~~~~~- 235 (535)
..++.|+|++|+|||||+..++-...... .-..++|++....+.... +..+++.++.... .....
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~r-l~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR-LVSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH-HHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHH-HHHHHHHcCCChHhHhhcEEEeccCChH
Confidence 36899999999999999998764322111 234588888776655544 3446666665422 01111
Q ss_pred ---HHHHHHHHHHhcCCcEEEEEeCC
Q 009411 236 ---GRARKLCERLKKEKKILVILDDI 258 (535)
Q Consensus 236 ---~~~~~l~~~l~~~~~~LlVlDdv 258 (535)
.....+...+...+.-+||+|.+
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecch
Confidence 12233334444446778889986
No 99
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.50 E-value=0.0024 Score=71.03 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=36.2
Q ss_pred cccccHHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 150 AFESRMSTLNDVINALKN-------P--DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.++|.+..++.+...+.. . ....+.|+|++|+|||++|+.+++...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468998888887776641 1 125788999999999999999998763
No 100
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.48 E-value=0.01 Score=57.00 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=48.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc-ccCcceEEEEEeCC-CCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA-DKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK 246 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~-~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 246 (535)
...+++|+|++|+||||++..++..... .+ ..+..+.... .....+.+.......+.+................+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFS 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhc
Confidence 4579999999999999999999877653 22 1344554432 233444444444444443322222222333333332
Q ss_pred cCCcEEEEEeCC
Q 009411 247 KEKKILVILDDI 258 (535)
Q Consensus 247 ~~~~~LlVlDdv 258 (535)
+.=++|+|-.
T Consensus 182 --~~dlvIiDT~ 191 (296)
T 2px0_A 182 --EYDHVFVDTA 191 (296)
T ss_dssp --GSSEEEEECC
T ss_pred --CCCEEEEeCC
Confidence 3458889944
No 101
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.47 E-value=0.0016 Score=60.78 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVAR 192 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~ 192 (535)
..+++|.|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 47899999999999999999884
No 102
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.32 E-value=0.004 Score=56.16 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 153 SRMSTLNDVINALKN---PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 153 gR~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.|.+.++.|.+.+.. ....+|+|.|+.|+||||+++.+.....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 355667777777663 3457999999999999999999987653
No 103
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.28 E-value=0.11 Score=49.72 Aligned_cols=88 Identities=24% Similarity=0.289 Sum_probs=51.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC-CCCHHHHHHHHHHHhCCCccC----CCchHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYE----ESESGRARKLCER 244 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~~ 244 (535)
..+++++|.+|+||||++..++......+ ..+.++.... .+...+.+.......+.+.-. .+.........+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 57899999999999999999987765432 2355555432 223334445555555554221 1222333445555
Q ss_pred HhcCCcEEEEEeCCC
Q 009411 245 LKKEKKILVILDDIW 259 (535)
Q Consensus 245 l~~~~~~LlVlDdv~ 259 (535)
+....-=++|+|-.-
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 542222378888753
No 104
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.28 E-value=0.0033 Score=68.41 Aligned_cols=170 Identities=12% Similarity=0.250 Sum_probs=80.8
Q ss_pred cccccccHHHHHHHHHHhc----------C---CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH
Q 009411 148 YEAFESRMSTLNDVINALK----------N---PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~----------~---~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 214 (535)
...+.|-++.+++|.+.+. . ...+-|.++|++|.|||.||+.+++..... ++.++ .
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~----~ 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIK----G 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECC----H
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEec----c
Confidence 3455676766666665443 0 123567899999999999999999987632 23332 1
Q ss_pred HHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc--------c--------ccccC---CCCC-CC
Q 009411 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--------D--------LENVG---IPFG-VR 274 (535)
Q Consensus 215 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--------~--------~~~~~---~~~~-~~ 274 (535)
.+++. .+.. .....+..+++..+...+++|++|+++... . ...+. .-+. ..
T Consensus 545 ~~l~s--------~~vG-ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 545 PELLT--------MWFG-ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp HHHHT--------TTCS-SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred chhhc--------cccc-hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 12111 1111 123456667666666678999999986321 0 11110 0111 23
Q ss_pred CeEEEEeecCchhhh-ccc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 009411 275 GCRVLMTARSQDVLS-SKM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (535)
Q Consensus 275 gs~ilvTtR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~Gl 339 (535)
+.-||.||....... ... .-...+.++.-+.++-.++|+.+........+. -...|++.+.|.
T Consensus 616 ~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~--dl~~la~~t~g~ 682 (806)
T 3cf2_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGF 682 (806)
T ss_dssp SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------------
T ss_pred CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHhCCCC
Confidence 444454665443321 111 223567777777777778887766432222211 134566666654
No 105
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.22 E-value=0.023 Score=51.95 Aligned_cols=90 Identities=19% Similarity=0.224 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccc---c-CcceEEEEEeCCCCCHHHHHHHHHHHhCCCcc----------CCCch
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD---K-LFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY----------EESES 235 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~---~-~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----------~~~~~ 235 (535)
..+++|+|++|+|||||++.++...... . .-..++|+.-....... -+..+.+..+.... .....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE-RIREIAQNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH-HHHHHHHHTTSCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH-HHHHHHHHcCCCHHHHhhcEEEEecCChH
Confidence 3699999999999999999998743321 1 13457787765543332 23444454443321 00111
Q ss_pred ---HHHHHHHHHHh-----cCCcEEEEEeCCCC
Q 009411 236 ---GRARKLCERLK-----KEKKILVILDDIWT 260 (535)
Q Consensus 236 ---~~~~~l~~~l~-----~~~~~LlVlDdv~~ 260 (535)
.....+...+. ..++-+||+|....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 11233333333 45678999998754
No 106
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.19 E-value=0.0036 Score=59.10 Aligned_cols=61 Identities=10% Similarity=0.170 Sum_probs=38.5
Q ss_pred cccccccHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC
Q 009411 148 YEAFESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~ 210 (535)
+..++|+...+..+.+.+. ......|.|+|++|+|||++|+.+++.....+ ...+.++.+.
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~--~~~~~v~~~~ 67 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ--GPFISLNCAA 67 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTT--SCEEEEEGGG
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccC--CCeEEEecCC
Confidence 3457888888877776554 22335677999999999999999998754221 1234455544
No 107
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.18 E-value=0.0063 Score=59.87 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=54.1
Q ss_pred HHHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHHhccc-cCcceEEEEEeCCCCCHHHHHHHHHHHhCC----CccCCC
Q 009411 160 DVINALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKAD-KLFDEVVYAEVSQRPDVKKIQGQIADKLGL----KFYEES 233 (535)
Q Consensus 160 ~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~----~~~~~~ 233 (535)
+.++.+. -.....++|+|++|+|||||++.+.+....+ ..+. ++++-+++...... ++.+.+.. ...+.+
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~---~~~~~~~~~vV~atadep 238 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVT---EMQRLVKGEVVASTFDEP 238 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHH---HHHTTCSSEEEEECTTSC
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHH---HHHHHhCeEEEEeCCCCC
Confidence 3445554 2345689999999999999999988765432 1233 44677887653221 22222211 001111
Q ss_pred chH------HHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 234 ESG------RARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 234 ~~~------~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
... ..-.+.+++. .++.+||++||+..
T Consensus 239 ~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 239 ASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 111 1112333332 47899999999853
No 108
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.05 E-value=0.006 Score=55.27 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 156 STLNDVINALKN--PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 156 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+.+++|.+.+.. ....+|+|+|+.|+|||||++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345566666653 4567999999999999999999987765
No 109
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.00 E-value=0.022 Score=57.85 Aligned_cols=97 Identities=24% Similarity=0.346 Sum_probs=63.2
Q ss_pred HHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC-HHHHHHHHHHHhCCC-------c---
Q 009411 162 INALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD-VKKIQGQIADKLGLK-------F--- 229 (535)
Q Consensus 162 ~~~L~-~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~l~~~-------~--- 229 (535)
++.|. =...+-++|.|.+|+|||+|+..+.+.... .+-+.++++-+++... ..++..++...-... .
T Consensus 156 ID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvv 234 (498)
T 1fx0_B 156 VNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVAL 234 (498)
T ss_dssp HHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEE
T ss_pred eeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEE
Confidence 44444 233467899999999999999999987532 2356788888988774 556666665542221 0
Q ss_pred ----cCCCc------hHHHHHHHHHHhc--CCcEEEEEeCCC
Q 009411 230 ----YEESE------SGRARKLCERLKK--EKKILVILDDIW 259 (535)
Q Consensus 230 ----~~~~~------~~~~~~l~~~l~~--~~~~LlVlDdv~ 259 (535)
.+.+. ....-.+.+++.. ++.+||++||+.
T Consensus 235 V~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 235 VYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 01111 1123455666654 789999999984
No 110
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.98 E-value=0.05 Score=52.64 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=37.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
..++.|.|.+|+||||||..++.....++ ..++|++... +..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~--s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSS--CHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCC--CHHHHHHHHHHH
Confidence 36899999999999999999987755433 5678887653 456666666554
No 111
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.97 E-value=0.0043 Score=54.52 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+|.|+|++|+||||+|+.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 112
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.94 E-value=0.0046 Score=53.89 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+|+|.|++|+||||+++.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988764
No 113
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.89 E-value=0.049 Score=53.36 Aligned_cols=157 Identities=8% Similarity=-0.089 Sum_probs=92.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhc
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (535)
.-.++..++|+.|.||++.+..+....... .|+....+.+....++.++...+.. .-+ .
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~pl-f 74 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA-------------------MSL-F 74 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH-------------------HHH-C
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC-------------------cCC-c
Confidence 345789999999999999999998865432 2432222233333444443332210 011 2
Q ss_pred CCcEEEEEeCCCC-c--ccccccC--CCCCCCCeEEEEeecC-------chhhhcccCCcceEecCCCCHHHHHHHHHHH
Q 009411 248 EKKILVILDDIWT-N--LDLENVG--IPFGVRGCRVLMTARS-------QDVLSSKMDCQNNFLIGVLNESEARDLFKKL 315 (535)
Q Consensus 248 ~~~~LlVlDdv~~-~--~~~~~~~--~~~~~~gs~ilvTtR~-------~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 315 (535)
+++-++|+|+++. . ..++.+. ..-+.+++.+|++|.. ..+..........++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 4567889999865 3 2333321 1112457777766643 1232323344568999999999999888877
Q ss_pred hCCCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 009411 316 VGDKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (535)
Q Consensus 316 ~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 346 (535)
+......- -.+.+..|++.++|.+..+...
T Consensus 155 ~~~~g~~i-~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNLEL-DDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTCEE-CHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCCCC-CHHHHHHHHHHhchHHHHHHHH
Confidence 64221111 1346788999999988777653
No 114
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.86 E-value=0.027 Score=57.07 Aligned_cols=88 Identities=24% Similarity=0.389 Sum_probs=52.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC-HHHHHHHHHHHhCC--------CccCCCchH-----
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD-VKKIQGQIADKLGL--------KFYEESESG----- 236 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~l~~--------~~~~~~~~~----- 236 (535)
+.++|+|.+|+|||||+..+......+ +-+.++++.+++..+ ..+++.++...-.. ...+.+...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 468899999999999999998875532 224456677777653 34455445332100 011111111
Q ss_pred HHHHHHHHHh--cCCcEEEEEeCCC
Q 009411 237 RARKLCERLK--KEKKILVILDDIW 259 (535)
Q Consensus 237 ~~~~l~~~l~--~~~~~LlVlDdv~ 259 (535)
..-.+.+++. .++++||++||+.
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1224455554 3789999999994
No 115
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.86 E-value=0.0049 Score=53.73 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 443
No 116
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.85 E-value=0.0043 Score=61.08 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=36.5
Q ss_pred CcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+..++|.+..+..+...+......-+.|+|++|+|||+||+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 4566889888666554444433344588999999999999999998764
No 117
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.83 E-value=0.04 Score=55.73 Aligned_cols=98 Identities=22% Similarity=0.347 Sum_probs=62.7
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC-HHHHHHHHHHHhCCC------c---
Q 009411 161 VINALKN-PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD-VKKIQGQIADKLGLK------F--- 229 (535)
Q Consensus 161 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~l~~~------~--- 229 (535)
.++.|.. ...+-++|.|.+|+|||+|+..+.+.... .+-+.++++-+++... ..++.+++...-... .
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvv 221 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVAL 221 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEE
Confidence 4455541 23467899999999999999999887532 2346678888888763 456667776552221 0
Q ss_pred ----cCCCch------HHHHHHHHHHh--cCCcEEEEEeCCC
Q 009411 230 ----YEESES------GRARKLCERLK--KEKKILVILDDIW 259 (535)
Q Consensus 230 ----~~~~~~------~~~~~l~~~l~--~~~~~LlVlDdv~ 259 (535)
.+.+.. ...-.+.+++. .++.+||++||+.
T Consensus 222 V~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 222 VYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 011111 12334555554 3799999999984
No 118
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.78 E-value=0.024 Score=51.58 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..++|.|.|++|+||||.|+.++....
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 468999999999999999999998765
No 119
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.77 E-value=0.03 Score=55.05 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=37.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCc----ceEEEEEeCCCCCHHHHHHHHHHHhC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLF----DEVVYAEVSQRPDVKKIQGQIADKLG 226 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f----~~~~wv~v~~~~~~~~~~~~i~~~l~ 226 (535)
...++.|+|++|+|||||+..++......... ..++|++....+.... +..+++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~ 190 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 190 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcC
Confidence 34799999999999999999998765211111 2358888766543333 334454443
No 120
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.76 E-value=0.014 Score=56.92 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=37.1
Q ss_pred ccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 149 EAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 149 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..++|++..++.+...+..+ .-+.++|++|+|||+||+.+++...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35789999888888777653 3578999999999999999998764
No 121
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.71 E-value=0.043 Score=50.71 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~ 210 (535)
..++.|.|++|+|||||+..++...... =..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 3689999999999999999887664322 23577777554
No 122
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.69 E-value=0.0069 Score=54.42 Aligned_cols=27 Identities=37% Similarity=0.367 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+|.|+|++|+||||+++.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999998764
No 123
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.69 E-value=0.21 Score=61.51 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=47.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (535)
+-+.++|++|+|||++|+.+..... .+ ..+.++.+...+...++..+-..+.......... ..-...+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCce
Confidence 5677999999999999988776532 12 3456777777777766666655543211000000 000002578
Q ss_pred EEEEEeCCC
Q 009411 251 ILVILDDIW 259 (535)
Q Consensus 251 ~LlVlDdv~ 259 (535)
+++.+||+.
T Consensus 1338 ~VlFiDEin 1346 (2695)
T 4akg_A 1338 LVLFCDEIN 1346 (2695)
T ss_dssp EEEEEETTT
T ss_pred EEEEecccc
Confidence 899999974
No 124
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.66 E-value=0.0067 Score=53.24 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVAR 192 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~ 192 (535)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 125
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.59 E-value=0.0078 Score=53.22 Aligned_cols=26 Identities=31% Similarity=0.426 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+.|.|+|++|+||||+|+.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998764
No 126
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.58 E-value=0.0068 Score=52.91 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+|+|+|++|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988754
No 127
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.55 E-value=0.0078 Score=53.50 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999865
No 128
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.52 E-value=0.0078 Score=53.11 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999987653
No 129
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.48 E-value=0.0098 Score=53.43 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=25.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.....+|+|+|++|+|||||++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999998765
No 130
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.48 E-value=0.0082 Score=53.30 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+|.|.|++|+||||+|+.+.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998765
No 131
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.45 E-value=0.0085 Score=61.87 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=36.4
Q ss_pred cccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 150 AFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.++|++..++.+...+..+ .-|.|+|++|+|||+||+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4779988888887776644 4678999999999999999998764
No 132
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.45 E-value=0.0099 Score=52.82 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+|.|.|++|+||||+++.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999987663
No 133
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.44 E-value=0.0078 Score=54.16 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+|+|.|++|+||||+|+.+.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988763
No 134
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.42 E-value=0.009 Score=52.60 Aligned_cols=26 Identities=42% Similarity=0.463 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.++|.|+|++|+||||+++.+.....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999997764
No 135
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.41 E-value=0.011 Score=52.27 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
...+|.|.|++|+||||+++.++.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999987654
No 136
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.41 E-value=0.01 Score=53.37 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
....+|+|+|+.|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998765
No 137
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.40 E-value=0.051 Score=52.53 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+|+|.|+.|+|||||++.+.....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456999999999999999999987654
No 138
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.39 E-value=0.0093 Score=52.89 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+|.|.|++|+||||+++.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 139
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.35 E-value=0.014 Score=53.27 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=28.4
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 159 NDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 159 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+.+...+.......|+|+|.+|+|||||+..+.....
T Consensus 27 ~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 27 DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3444444445678899999999999999999988754
No 140
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.34 E-value=0.066 Score=51.46 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=48.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH--HHHHHHHHHHhCCCccCC---Cch-HH-HHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV--KKIQGQIADKLGLKFYEE---SES-GR-ARKL 241 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~--~~~~~~i~~~l~~~~~~~---~~~-~~-~~~l 241 (535)
...++.|+|++|+||||++..++......+ ..+.++... .+.. .+-+...++.++.+.... .+. .. ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 457999999999999999999998765421 234455443 2222 223344555555432211 111 11 1233
Q ss_pred HHHHhcCCcEEEEEeCCC
Q 009411 242 CERLKKEKKILVILDDIW 259 (535)
Q Consensus 242 ~~~l~~~~~~LlVlDdv~ 259 (535)
...+.. +.-++|+|-.-
T Consensus 180 ~~a~~~-~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALAR-NKDVVIIDTAG 196 (306)
T ss_dssp HHHHHT-TCSEEEEEECC
T ss_pred HHHHhc-CCCEEEEECCC
Confidence 333443 44588888764
No 141
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.32 E-value=0.16 Score=52.33 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
..++|.|+|.+|+||||++..++.....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4579999999999999999999877654
No 142
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.31 E-value=0.018 Score=57.00 Aligned_cols=45 Identities=22% Similarity=0.179 Sum_probs=35.3
Q ss_pred ccccHHHHHHHHHHhc-------------C--CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 151 FESRMSTLNDVINALK-------------N--PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 151 ~~gR~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
++|.+..++.+...+. . .....+.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5788888887777662 1 1346788999999999999999998874
No 143
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.31 E-value=0.011 Score=53.48 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+|+|+|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987754
No 144
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.30 E-value=0.0096 Score=53.70 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+|+|+|++|+|||||++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999988763
No 145
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.29 E-value=0.0095 Score=52.82 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
|.|+|+|++|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5688999999999999999987654
No 146
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.29 E-value=0.011 Score=51.25 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+|+|.|++|+||||+++.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999998765
No 147
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.28 E-value=0.014 Score=51.11 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+|+|+|++|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 148
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.28 E-value=0.017 Score=55.19 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 149
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.26 E-value=0.011 Score=55.32 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+|.|.|++|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988754
No 150
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.24 E-value=0.01 Score=51.97 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..|.|.|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998764
No 151
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.22 E-value=0.014 Score=52.46 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+|+|.|++|+||||+++.+.+...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999987653
No 152
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.20 E-value=0.013 Score=52.12 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+|+|.|++|+||||+|+.+.....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36799999999999999999987654
No 153
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.20 E-value=0.013 Score=52.21 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+|+|.|++|+||||+|+.+.....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987654
No 154
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.19 E-value=0.012 Score=53.80 Aligned_cols=111 Identities=11% Similarity=0.043 Sum_probs=60.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhc-
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK- 247 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~- 247 (535)
...++.|+|..|+||||++..+.+....++ ..++.+...... . ....+++.++........ .....+.+.+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~-~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEV-ESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEE-SSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEeccCc--h-HHHHHHHhcCCCcccccc-CCHHHHHHHHHHH
Confidence 347899999999999999999988876432 224444332221 1 112344445543322111 112234444332
Q ss_pred ---CCcEEEEEeCCCCc--ccccccCCCCCCCCeEEEEeecCch
Q 009411 248 ---EKKILVILDDIWTN--LDLENVGIPFGVRGCRVLMTARSQD 286 (535)
Q Consensus 248 ---~~~~LlVlDdv~~~--~~~~~~~~~~~~~gs~ilvTtR~~~ 286 (535)
++.-+||+|.+... +.++.+.. +...|..||+|.+..+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANI-LAENGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHH-HHHTTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHH-HHhCCCeEEEEecccc
Confidence 33459999998542 23333211 1123778999988654
No 155
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.18 E-value=0.01 Score=52.38 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988764
No 156
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.17 E-value=0.013 Score=52.63 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 157
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.17 E-value=0.012 Score=52.65 Aligned_cols=24 Identities=25% Similarity=0.584 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 158
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.15 E-value=0.014 Score=50.73 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
..+++.|.|..|+|||||+..+......
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 3578999999999999999999987653
No 159
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.14 E-value=0.014 Score=51.55 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
....|+|+|++|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999886
No 160
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.12 E-value=0.026 Score=53.91 Aligned_cols=29 Identities=17% Similarity=0.097 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
....+|+|+|..|+||||||+.+......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45679999999999999999998877653
No 161
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.12 E-value=0.014 Score=53.19 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 156 STLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 156 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+..+.+...+...+.++|+|+|.+|+|||||+..+.....
T Consensus 16 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 16 RLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3344444444445678999999999999999999988754
No 162
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.08 E-value=0.015 Score=52.46 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
.+|+|.|++|+||||+|+.+......
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 57999999999999999999988654
No 163
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.05 E-value=0.025 Score=55.18 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 155 MSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 155 ~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+...+.+++.+. .+....|.|+|++|+||||+++.++....
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 334444554443 45566799999999999999999988755
No 164
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.05 E-value=0.015 Score=52.31 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 165
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.04 E-value=0.016 Score=51.20 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...|+|.|++|+||||+++.+.....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999987653
No 166
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.04 E-value=0.013 Score=51.08 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998754
No 167
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.02 E-value=0.011 Score=58.02 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=36.4
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhccc-cCcceEEEEEeCCCC
Q 009411 159 NDVINALKN-PDVHMIGAYGMAGVGKTMLVKEVARQAKAD-KLFDEVVYAEVSQRP 212 (535)
Q Consensus 159 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~wv~v~~~~ 212 (535)
-+.++.+.. ...+-++|.|.+|+|||+|+..+.+....+ ..+. ++++-+++..
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER~ 217 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDERP 217 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCCH
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccCc
Confidence 345666662 344678999999999999999999875432 1133 3567777654
No 168
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.02 E-value=0.012 Score=52.17 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998764
No 169
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.02 E-value=0.014 Score=52.05 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+|+|.|++|+||||+|+.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988764
No 170
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.01 E-value=0.015 Score=51.66 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVAR 192 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~ 192 (535)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 171
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.00 E-value=0.015 Score=54.61 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998743
No 172
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.00 E-value=0.042 Score=65.25 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC------CCchHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE------ESESGRARKLC 242 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~ 242 (535)
..+.+.|+|++|+|||+||.++......++ ..++|+++....+... ++.++.+.+. .+.+.....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G--~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 357899999999999999999988755332 3477888877766544 4555533221 12223333333
Q ss_pred HHHhcCCcEEEEEeCCC
Q 009411 243 ERLKKEKKILVILDDIW 259 (535)
Q Consensus 243 ~~l~~~~~~LlVlDdv~ 259 (535)
......+..+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 34444678899999984
No 173
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.00 E-value=0.016 Score=54.17 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
....+|+|.|++|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999988654
No 174
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.99 E-value=0.025 Score=56.26 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998764
No 175
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.96 E-value=0.0035 Score=69.03 Aligned_cols=150 Identities=12% Similarity=0.235 Sum_probs=80.1
Q ss_pred cccccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH
Q 009411 148 YEAFESRMSTLNDVINALKN-------------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 148 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 214 (535)
...+.|-+...+.|.+.+.- .....+.++|++|+|||+||+.+++..... |- .++.+.-.+
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~--~i---~v~~~~l~~- 549 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN--FI---SIKGPELLT- 549 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC--CC---CCCCSSSTT-
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC--EE---EEechHhhh-
Confidence 34556777777776665531 123568899999999999999999887532 21 111111100
Q ss_pred HHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCcEEEEEeCCCCcc----------------cccccCCCCC----CC
Q 009411 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------DLENVGIPFG----VR 274 (535)
Q Consensus 215 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------------~~~~~~~~~~----~~ 274 (535)
.... ........+.+......+++|++|+++... ....+...+. ..
T Consensus 550 -------------~~~g-~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~ 615 (806)
T 1ypw_A 550 -------------MWFG-ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp -------------CCTT-TSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------
T ss_pred -------------hhcC-ccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccC
Confidence 0001 111233444444433346788899875310 0122211111 23
Q ss_pred CeEEEEeecCchhhh-cccC---CcceEecCCCCHHHHHHHHHHHhC
Q 009411 275 GCRVLMTARSQDVLS-SKMD---CQNNFLIGVLNESEARDLFKKLVG 317 (535)
Q Consensus 275 gs~ilvTtR~~~v~~-~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (535)
+..||.||....... .... ....+.++..+.++-.++++.+..
T Consensus 616 ~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTS
T ss_pred CeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhc
Confidence 445666665543221 1111 224677788888888888887764
No 176
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.96 E-value=0.016 Score=51.88 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
.+..+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999875
No 177
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.96 E-value=0.015 Score=52.52 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988654
No 178
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.95 E-value=0.03 Score=51.98 Aligned_cols=28 Identities=14% Similarity=0.026 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.....|+|.|++|+||||+|+.+.+...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3557899999999999999999987653
No 179
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.94 E-value=0.019 Score=51.57 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+|+|.|++|+||||+|+.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988764
No 180
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.93 E-value=0.017 Score=55.91 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=30.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~ 210 (535)
++.+||+|.|-|||||||.+..+..-....++ .+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~Gk--kVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK--RVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCC--eEEEEecCC
Confidence 46799999999999999999988877654332 355666653
No 181
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.92 E-value=0.017 Score=51.60 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987653
No 182
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.92 E-value=0.011 Score=52.10 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+|.|.|++|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987754
No 183
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.88 E-value=0.017 Score=51.19 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+|+|.|++|+||||+|+.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988754
No 184
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.85 E-value=0.017 Score=52.93 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+|+|+|++|+||||+++.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987654
No 185
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.80 E-value=0.019 Score=52.34 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...|.|.|++|+||||+|+.+.....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999988764
No 186
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.80 E-value=0.019 Score=49.75 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.|+|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 187
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.79 E-value=0.015 Score=52.22 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+.++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36789999999999999999987653
No 188
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.78 E-value=0.019 Score=53.41 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+|+|+|+.|+|||||++.++....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999997654
No 189
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.77 E-value=0.018 Score=50.70 Aligned_cols=24 Identities=42% Similarity=0.509 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.++|+|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998765
No 190
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.75 E-value=0.017 Score=51.94 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVAR 192 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~ 192 (535)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4789999999999999999987
No 191
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.74 E-value=0.019 Score=51.91 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=25.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcce
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDE 202 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~ 202 (535)
..+|+|.|+.|+||||+++.+....... +++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999876542 3444
No 192
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.71 E-value=0.02 Score=50.85 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998763
No 193
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.69 E-value=0.021 Score=51.60 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
..+|+|.|+.|+||||+++.+......
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987653
No 194
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.69 E-value=0.02 Score=51.65 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+|+|+|++|+||||+++.+....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998653
No 195
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.67 E-value=0.13 Score=49.27 Aligned_cols=88 Identities=20% Similarity=0.300 Sum_probs=48.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC-CHHHHHHHHHHHhCCCccC----CCchHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLKFYE----ESESGRARKLCE 243 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~ 243 (535)
...+++|+|.+|+||||++..++......+ ..+.++...... .....+..+....+.+.-. ....+.......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999998765331 234455443221 1112233445555543221 122223333444
Q ss_pred HHhcCCcEEEEEeCC
Q 009411 244 RLKKEKKILVILDDI 258 (535)
Q Consensus 244 ~l~~~~~~LlVlDdv 258 (535)
.+...+.=++|+|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 442123457888976
No 196
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.63 E-value=0.02 Score=52.55 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...|.|.|++|+||||+|+.+.....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999988654
No 197
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.62 E-value=0.02 Score=52.33 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...|.|.|++|+||||+++.++....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998765
No 198
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.62 E-value=0.021 Score=51.80 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.|+|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987764
No 199
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.59 E-value=0.018 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVA 191 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~ 191 (535)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999643
No 200
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.59 E-value=0.025 Score=52.84 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+|.|+|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999988754
No 201
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.50 E-value=0.078 Score=53.33 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc--cCcceEEEEEeCCCC-CHHHHHHHHHHHhCCC-------ccCCCchH----
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKAD--KLFDEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESESG---- 236 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~--~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 236 (535)
+-++|.|.+|+|||+|+.+++++.... +.-..++++-+++.. ...++..++...-... ..+.+...
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 457899999999999999999886542 111156778888765 3455555554431111 11111111
Q ss_pred --HHHHHHHHHh--cCCcEEEEEeCCC
Q 009411 237 --RARKLCERLK--KEKKILVILDDIW 259 (535)
Q Consensus 237 --~~~~l~~~l~--~~~~~LlVlDdv~ 259 (535)
....+.+++. .++.+||++||+.
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 2335666666 3799999999984
No 202
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.49 E-value=0.021 Score=51.44 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVAR 192 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~ 192 (535)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 203
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.48 E-value=0.023 Score=51.53 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.|+|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987654
No 204
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.46 E-value=0.025 Score=50.48 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.-.+|+|+|+.|+||||+++.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998764
No 205
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.44 E-value=0.28 Score=47.60 Aligned_cols=58 Identities=24% Similarity=0.262 Sum_probs=37.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC-CCCHHHHHHHHHHHhCC
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGL 227 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~ 227 (535)
....+++|+|+.|+||||+++.++......+ ..+.++...- .....+-+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~--g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG--FSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CEEEEEeecccccchHHHHHHHHHHcCc
Confidence 4568999999999999999999988765421 1233333321 22344455555666664
No 206
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.43 E-value=0.025 Score=50.38 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 207
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.41 E-value=0.025 Score=50.72 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998876
No 208
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.38 E-value=0.028 Score=52.53 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+|+|.|+.|+||||+++.+.....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999997765
No 209
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.37 E-value=0.033 Score=49.75 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=27.6
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 158 LNDVINALKN-PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 158 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+..+..++.+ +....+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444443 2234789999999999999999998764
No 210
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.36 E-value=0.064 Score=49.56 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=31.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 220 (535)
..++.|.|.+|+|||++|.+++.....+ .-..++|++... +...+...
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~--~~~~~~~~ 77 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE--RARDLRRE 77 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS--CHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccC--CHHHHHHH
Confidence 3689999999999999999976543221 123466666554 34444444
No 211
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.36 E-value=0.027 Score=50.85 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998765
No 212
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.35 E-value=0.023 Score=51.82 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 213
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.35 E-value=0.028 Score=52.21 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44789999999999999999998764
No 214
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.34 E-value=0.027 Score=54.38 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
....+|+|.|+.|+|||||++.+..-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3457999999999999999999987654
No 215
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.32 E-value=0.14 Score=51.47 Aligned_cols=87 Identities=21% Similarity=0.282 Sum_probs=46.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHH--HHHHHHHHHhCCCccC----CCchHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK--KIQGQIADKLGLKFYE----ESESGRARKLC 242 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~--~~~~~i~~~l~~~~~~----~~~~~~~~~l~ 242 (535)
...++.|+|++|+||||++..++......+ ..+..+.. +.+... +.+.......+.+.-. .+.........
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g--~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 357899999999999999999998775432 22444443 223322 2234445555543211 11222223344
Q ss_pred HHHhcCCcEEEEEeCC
Q 009411 243 ERLKKEKKILVILDDI 258 (535)
Q Consensus 243 ~~l~~~~~~LlVlDdv 258 (535)
+.+....-=++|+|-.
T Consensus 174 ~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 174 EKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHHCCCCEEEEcCC
Confidence 4443122226677754
No 216
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.27 E-value=0.014 Score=52.85 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988765
No 217
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.27 E-value=0.028 Score=51.25 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 347899999999999999999988654
No 218
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.27 E-value=0.085 Score=53.06 Aligned_cols=90 Identities=20% Similarity=0.233 Sum_probs=55.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccc--------cCcc-eEEEEEeCCCCC-HHHHHHHHHHHhCCC-------ccCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD--------KLFD-EVVYAEVSQRPD-VKKIQGQIADKLGLK-------FYEE 232 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~--------~~f~-~~~wv~v~~~~~-~~~~~~~i~~~l~~~-------~~~~ 232 (535)
-+-++|.|.+|+|||+|+.+++++.... ++-+ .++++-+++... ..++..++...-... ..+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3567899999999999999999886542 1122 567778887653 445555543321010 1111
Q ss_pred CchH------HHHHHHHHHh--cCCcEEEEEeCCC
Q 009411 233 SESG------RARKLCERLK--KEKKILVILDDIW 259 (535)
Q Consensus 233 ~~~~------~~~~l~~~l~--~~~~~LlVlDdv~ 259 (535)
+... ..-.+.+++. .++.+||++||+.
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1111 2335666665 3789999999984
No 219
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.24 E-value=0.11 Score=61.08 Aligned_cols=84 Identities=17% Similarity=0.241 Sum_probs=53.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC------CCchHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE------ESESGRARKLCE 243 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 243 (535)
..++.|.|++|+||||||.+++......+ ..++|++........ +++.++.+.+. .+..+....+..
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 46899999999999999999988765332 257888777665542 15666654321 122222222322
Q ss_pred HHhcCCcEEEEEeCCCC
Q 009411 244 RLKKEKKILVILDDIWT 260 (535)
Q Consensus 244 ~l~~~~~~LlVlDdv~~ 260 (535)
.....+.-+||+|.+..
T Consensus 805 lv~~~~~~lVVIDsLq~ 821 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAA 821 (1706)
T ss_dssp HHHHTCCSEEEESCSTT
T ss_pred HHHccCCCEEEEechhh
Confidence 22335667999999864
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.24 E-value=0.033 Score=50.42 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999988764
No 221
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.21 E-value=0.03 Score=50.50 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+|.|.|++|+||||.|+.++....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998765
No 222
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.19 E-value=0.032 Score=48.90 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+|+|.|+.|+||||+++.+.....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46889999999999999999988753
No 223
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.18 E-value=0.031 Score=53.72 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
...+++|+|++|+|||||+..++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999877653
No 224
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.15 E-value=0.023 Score=49.66 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
++++|+|..|+|||||++.+..-....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 689999999999999999998876543
No 225
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.14 E-value=0.15 Score=52.51 Aligned_cols=95 Identities=17% Similarity=0.263 Sum_probs=57.3
Q ss_pred HHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC-CHHHHHHHHHH----HhCCC------
Q 009411 161 VINALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIAD----KLGLK------ 228 (535)
Q Consensus 161 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~----~l~~~------ 228 (535)
.++.|. =...+-++|.|..|+|||+|+.++.+... -+.++++-+++.. ...+++.++-+ .++..
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtv 297 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTV 297 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEE
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceE
Confidence 455555 23346789999999999999999988743 3568888888774 33344433321 11111
Q ss_pred ----ccCCCchH------HHHHHHHHHh-cCCcEEEEEeCCC
Q 009411 229 ----FYEESESG------RARKLCERLK-KEKKILVILDDIW 259 (535)
Q Consensus 229 ----~~~~~~~~------~~~~l~~~l~-~~~~~LlVlDdv~ 259 (535)
..+.+... ..-.+.+++. .++.+||++|++.
T Consensus 298 vV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 298 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 00111111 1224445554 3789999999984
No 226
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.12 E-value=0.036 Score=47.64 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
....+++|.|+.|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345799999999999999999998865
No 227
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.09 E-value=0.067 Score=52.73 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=29.4
Q ss_pred HHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 158 LNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 158 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+++.+. ..+..+|+|+|.+|+|||||+..+.....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344454454 45678999999999999999999987754
No 228
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.03 E-value=0.28 Score=49.79 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=36.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
..++.|.|.+|+||||||..++....... =..++|++... +..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~--~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEM--PAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCC--CHHHHHHHHHHH
Confidence 36899999999999999999988765321 13477777653 455666665543
No 229
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.01 E-value=0.068 Score=51.40 Aligned_cols=43 Identities=14% Similarity=0.263 Sum_probs=31.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCC
Q 009411 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR 211 (535)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~ 211 (535)
....++|+|+|-||+||||+|..++......+ ..++-|.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 44678999999999999999999988765432 24666666543
No 230
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.99 E-value=0.058 Score=47.16 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.++++|+|+.|+|||||+..+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999988754
No 231
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.99 E-value=0.034 Score=59.18 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=39.1
Q ss_pred CcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 147 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3467889998888877777655 5789999999999999999998764
No 232
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.96 E-value=0.052 Score=54.91 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=60.5
Q ss_pred HHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHHhccccC--cceEEEEEeCCCC-CHHHHHHHHHHHhCCC-------cc
Q 009411 162 INALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKL--FDEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FY 230 (535)
Q Consensus 162 ~~~L~-~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~--f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~ 230 (535)
++.|. =...+-++|.|.+|+|||+|+.+++++....+. =+.++++-+++.. ...++..++...-... ..
T Consensus 143 ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ts 222 (469)
T 2c61_A 143 IDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLA 222 (469)
T ss_dssp HHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEET
T ss_pred eeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECC
Confidence 45454 123356778899999999999999998764221 1457788888765 3456666665432111 11
Q ss_pred CCCch------HHHHHHHHHHh--cCCcEEEEEeCCC
Q 009411 231 EESES------GRARKLCERLK--KEKKILVILDDIW 259 (535)
Q Consensus 231 ~~~~~------~~~~~l~~~l~--~~~~~LlVlDdv~ 259 (535)
+.+.. ...-.+.+++. .++.+||++||+.
T Consensus 223 d~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 223 DDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 11111 12335556665 4899999999973
No 233
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.93 E-value=0.039 Score=50.12 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVAR 192 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~ 192 (535)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 234
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.90 E-value=0.21 Score=50.88 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 222 (535)
..++.|.|.+|+|||||+..++....... =..++|++... +...+...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 36899999999999999999988765321 12477777554 3455555553
No 235
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.90 E-value=0.03 Score=50.95 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..|.|.|++|+||||+|+.+.....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998764
No 236
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.89 E-value=0.037 Score=53.78 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+|+|.|+.|+||||||..++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 237
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.89 E-value=0.037 Score=49.64 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+|+|.|+.|+||||+++.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988654
No 238
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.86 E-value=0.042 Score=50.57 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...|.|.|++|+||||+|+.+.....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 239
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.85 E-value=0.037 Score=52.63 Aligned_cols=24 Identities=21% Similarity=0.540 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVAR 192 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~ 192 (535)
...+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 240
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.84 E-value=0.11 Score=53.39 Aligned_cols=96 Identities=17% Similarity=0.220 Sum_probs=58.0
Q ss_pred HHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH-HHHHHHHHH----HhCCC------
Q 009411 161 VINALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV-KKIQGQIAD----KLGLK------ 228 (535)
Q Consensus 161 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~i~~----~l~~~------ 228 (535)
.++.|. =...+-++|.|..|+|||+|+.++.+... -+.++++-+++..+. .+++.++-+ ..+..
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtv 292 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTV 292 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEE
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceE
Confidence 455555 22346789999999999999999887643 356888889987753 444444321 01100
Q ss_pred ----ccCCCchH------HHHHHHHHHh-cCCcEEEEEeCCCC
Q 009411 229 ----FYEESESG------RARKLCERLK-KEKKILVILDDIWT 260 (535)
Q Consensus 229 ----~~~~~~~~------~~~~l~~~l~-~~~~~LlVlDdv~~ 260 (535)
..+.+... ..-.+.+++. .++.+||++||+..
T Consensus 293 vV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR 335 (588)
T 3mfy_A 293 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSR 335 (588)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTT
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHH
Confidence 01111111 1223444443 37899999999953
No 241
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.82 E-value=0.1 Score=53.42 Aligned_cols=44 Identities=27% Similarity=0.375 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 153 SRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 153 gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
+....+..+...+.+.+ +.+.|.|.+|+|||+++..+.......
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 34455666666666544 489999999999999999998876543
No 242
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.81 E-value=0.039 Score=50.71 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+|+|.|++|+||||+++.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999987764
No 243
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.80 E-value=0.034 Score=51.81 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+|+|+|+.|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36899999999999999999998764
No 244
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.79 E-value=0.043 Score=55.45 Aligned_cols=47 Identities=30% Similarity=0.323 Sum_probs=34.8
Q ss_pred cccccHHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 150 AFESRMSTLNDVINALKN--------------PDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 150 ~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
.++|.++.++.+...+.. ...+-|.++|++|+|||++|+.++.....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 456777777766655421 13456889999999999999999988653
No 245
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.78 E-value=0.039 Score=50.43 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987753
No 246
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.78 E-value=0.15 Score=60.70 Aligned_cols=83 Identities=19% Similarity=0.348 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC-----CCchHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE-----ESESGRARKLCER 244 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 244 (535)
.+++.|.|++|+||||||.+++......+ ..++|++.....+.. .++.++.+.+. ....+.+....+.
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 46899999999999999999988765332 358888887776643 25666654322 1122222222222
Q ss_pred -HhcCCcEEEEEeCCC
Q 009411 245 -LKKEKKILVILDDIW 259 (535)
Q Consensus 245 -l~~~~~~LlVlDdv~ 259 (535)
....+.-+||+|.+.
T Consensus 456 lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHTCCSEEEESCGG
T ss_pred HHHhcCCcEEEECCHH
Confidence 223456799999984
No 247
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.76 E-value=0.038 Score=50.06 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.|+|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988763
No 248
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.71 E-value=0.035 Score=49.29 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999987654
No 249
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.70 E-value=0.041 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.200 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
++|.|+|+.|+||||||..++....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 250
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.69 E-value=0.32 Score=49.60 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=30.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
...+++|+|..|+|||||++.++...... .+.+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 35799999999999999999998876532 3445554444444
No 251
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.68 E-value=0.18 Score=49.04 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=36.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
.++.|.|.+|+||||||..++...... =..++|++.. -+..++...++..
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCC--CCHHHHHHHHHHH
Confidence 689999999999999999998876542 2356777654 3456666666544
No 252
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.61 E-value=0.036 Score=49.21 Aligned_cols=113 Identities=13% Similarity=0.078 Sum_probs=56.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC---CCCHHHHHHHHH---HHhCC--CccCCC---chH---
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ---RPDVKKIQGQIA---DKLGL--KFYEES---ESG--- 236 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~---~~~~~~~~~~i~---~~l~~--~~~~~~---~~~--- 236 (535)
..|.|++..|.||||+|-...-+.-..+ -.+.++..-. .+....++..+. ...+. .+.... +..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G--~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG--KNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT--CCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4566666677999999998887755432 2344443322 233344444430 00000 011111 011
Q ss_pred -HHHHHHHHHhcCCcEEEEEeCCCCc--------ccccccCCCCCCCCeEEEEeecCch
Q 009411 237 -RARKLCERLKKEKKILVILDDIWTN--------LDLENVGIPFGVRGCRVLMTARSQD 286 (535)
Q Consensus 237 -~~~~l~~~l~~~~~~LlVlDdv~~~--------~~~~~~~~~~~~~gs~ilvTtR~~~ 286 (535)
......+.+..++-=|||||++-.. +++-.+... ......||+|+|...
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCc
Confidence 2233444444445459999998332 111111111 134667999999974
No 253
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.59 E-value=0.028 Score=51.65 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-HHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVA-RQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~-~~~ 194 (535)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 254
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.57 E-value=0.2 Score=51.81 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=37.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
..++.|.|.+|+||||||.+++.....+ +=..++|++... +..++...++..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHH
Confidence 3688999999999999999998876543 112477877654 455666665443
No 255
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.56 E-value=0.2 Score=44.73 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=33.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHH
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 223 (535)
.|+|-|.-|+||||.++.+++....+++ .+++..-+......+..+.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~--~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGK--KVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC--cEEEEECCCCCcHHHHHHHHhh
Confidence 4788899999999999999988765432 2344433333444555555543
No 256
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.53 E-value=0.092 Score=48.18 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
....|+|.|++|+||||+++.+......
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999988764
No 257
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.51 E-value=0.048 Score=52.38 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+++|+|+.|+||||+++.++....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999999988765
No 258
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.50 E-value=0.047 Score=52.69 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
....+|+|.|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999987654
No 259
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.49 E-value=0.12 Score=47.54 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEE
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAE 207 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~ 207 (535)
...|+|.|+.|+||||+++.+....... .+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeec
Confidence 4689999999999999999999887653 355344433
No 260
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.48 E-value=0.048 Score=52.19 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.++|+|.|+.|+||||||..++....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 36899999999999999999987653
No 261
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.43 E-value=0.059 Score=50.38 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...++.+.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357888999999999999999987765
No 262
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.40 E-value=0.73 Score=57.39 Aligned_cols=231 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHh--------CCCccCCCchHHHHHHHHH
Q 009411 173 IGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL--------GLKFYEESESGRARKLCER 244 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l--------~~~~~~~~~~~~~~~l~~~ 244 (535)
|.++|++|+|||+++..+...... ...+.++.+...+...++..+-..+ |.-......
T Consensus 1307 vLL~GptGtGKT~li~~~L~~l~~----~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~---------- 1372 (3245)
T 3vkg_A 1307 LILCGPPGSGKTMTLTSTLRAFPD----FEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQL---------- 1372 (3245)
T ss_dssp CEEESSTTSSHHHHHHHHGGGCTT----EEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESST----------
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC----CceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcC----------
Q ss_pred HhcCCcEEEEEeCCCCcc-----------------cccccCCCCC-----CCCeEEEEeecCch------hhhcccCCcc
Q 009411 245 LKKEKKILVILDDIWTNL-----------------DLENVGIPFG-----VRGCRVLMTARSQD------VLSSKMDCQN 296 (535)
Q Consensus 245 l~~~~~~LlVlDdv~~~~-----------------~~~~~~~~~~-----~~gs~ilvTtR~~~------v~~~~~~~~~ 296 (535)
|++.++.+||+.-+. +...+..+.. -.+..+|.|..... +..+......
T Consensus 1373 ---Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~ 1449 (3245)
T 3vkg_A 1373 ---GKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAP 1449 (3245)
T ss_dssp ---TCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCC
T ss_pred ---CceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhce
Q ss_pred eEecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCCCcc
Q 009411 297 NFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEWKSALRELTRPSSGSFSGV 376 (535)
Q Consensus 297 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~~~~~~~~~ 376 (535)
.+.++..+.++-..+|.. |.+..-...-.+..++..+......-|..+...+.........-.
T Consensus 1450 vi~i~~ps~esL~~If~t-----------------il~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~Fn 1512 (3245)
T 3vkg_A 1450 ILLVDFPSTSSLTQIYGT-----------------FNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYS 1512 (3245)
T ss_dssp EEECCCCCHHHHHHHHHH-----------------HHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCC
T ss_pred EEEeCCCCHHHHHHHHHH-----------------HHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccc
Q ss_pred hHHHHHHHHhhhcCCCCCchHHHHHHhhccCCCCCCCHHHHHHHhh--hcccccCCCcHHHHHHHHHHHHHHHHHccc
Q 009411 377 AAEAYKTSELSYNHLEGEELKSTFLLCCLMDFIENPSVLYLLSYGM--GLGLFKGTHTMEEARDRALTLVDKLKNSYL 452 (535)
Q Consensus 377 ~~~v~~~l~~sy~~L~~~~~k~c~~~ls~fp~~~~i~~~~Li~~W~--a~g~i~~~~~~~~~~~~~~~~l~~L~~~sl 452 (535)
.+++..+++--+..+++. .....+.++++|. +.....+.-..++....+.+++.+.....|
T Consensus 1513 LRDLsrv~qGll~~~~~~---------------~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F 1575 (3245)
T 3vkg_A 1513 PRELSRWDRALLEAIQTM---------------DGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHF 1575 (3245)
T ss_dssp HHHHHHHHHHHHHHHHTS---------------SCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCcc---------------ccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
No 263
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.34 E-value=0.16 Score=48.47 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=34.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (535)
..+++|.|++|+|||||++.++....... =..++|++... +..++...+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHHHH
Confidence 46899999999999999999987765321 01366665443 344444444443
No 264
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.33 E-value=0.049 Score=50.39 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.+++|+|+.|+|||||.+.++.-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 789999999999999999997654
No 265
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.30 E-value=0.062 Score=51.33 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.++|.|.|+.|+||||||..++....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 46899999999999999999997754
No 266
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.29 E-value=0.15 Score=46.19 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 223 (535)
..|++.|+.|+||||+++.+.......+ +..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~-~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLG-IRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC-CCcceeeeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999998876543 433333333333334455555554
No 267
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.27 E-value=0.32 Score=49.33 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 223 (535)
..++.|.|.+|+||||+|..++.....++ ..++|++.... ..++...++.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEms--~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMG--KKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSSC--TTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCCC--HHHHHHHHHH
Confidence 36899999999999999999988765432 35777766543 3344444443
No 268
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.26 E-value=0.045 Score=53.01 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.++|+|+|+.|+|||||+..++....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999987653
No 269
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.22 E-value=0.051 Score=52.08 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 270
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.21 E-value=0.13 Score=46.76 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=34.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhcc-ccCcceEEEEEeCCCCCHHHHHHHHHH
Q 009411 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAKA-DKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (535)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~-~~~f~~~~wv~v~~~~~~~~~~~~i~~ 223 (535)
......|+|.|+.|+||||+++.+.+.... .+ +..+....-.......+.+++++.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g-~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYG-VNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC-GGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccC-ceeeEeeeCCCCChHHHHHHHHHh
Confidence 344678999999999999999999988764 32 333331222222233444555544
No 271
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.20 E-value=0.047 Score=50.38 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+++|+|+.|+|||||.+.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999987544
No 272
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.15 E-value=0.029 Score=53.64 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+..+|+|.|+.|+||||+|+.+.....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987654
No 273
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.13 E-value=0.25 Score=50.42 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=57.5
Q ss_pred HHHHhc-CCCceEEEEEcCCCCcHHHHH-HHHHHHhcc----ccCcc-eEEEEEeCCCCC-HHHHHHHHHHHhCCC----
Q 009411 161 VINALK-NPDVHMIGAYGMAGVGKTMLV-KEVARQAKA----DKLFD-EVVYAEVSQRPD-VKKIQGQIADKLGLK---- 228 (535)
Q Consensus 161 l~~~L~-~~~~~vi~I~G~gGiGKTtLa-~~~~~~~~~----~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~l~~~---- 228 (535)
.++.+. =...+-++|.|.+|+|||+|| ..+.++... .++-+ .++++-+++..+ ..++.+.+...-...
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 345554 233456889999999999995 566666542 11234 477888888764 455555554422111
Q ss_pred ---ccCCCchH------HHHHHHHHHh-cCCcEEEEEeCCC
Q 009411 229 ---FYEESESG------RARKLCERLK-KEKKILVILDDIW 259 (535)
Q Consensus 229 ---~~~~~~~~------~~~~l~~~l~-~~~~~LlVlDdv~ 259 (535)
..+.+... ..-.+.+++. .++.+||++||+.
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 11111111 1224445553 3789999999984
No 274
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.00 E-value=0.069 Score=51.71 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
...+|+|+|.+|+||||++..++.....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999887653
No 275
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.94 E-value=0.05 Score=54.94 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=23.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 167 NPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.....+|.|+|++|+||||+|+.+....
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456899999999999999999998654
No 276
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.92 E-value=0.066 Score=52.65 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+++|+|+.|+||||+++.++....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 357999999999999999999988765
No 277
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.92 E-value=0.047 Score=49.98 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|+|+.|+|||||.+.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987543
No 278
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.88 E-value=0.061 Score=47.64 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998764
No 279
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.86 E-value=0.056 Score=49.91 Aligned_cols=26 Identities=19% Similarity=0.426 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998654
No 280
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.84 E-value=0.25 Score=50.29 Aligned_cols=95 Identities=20% Similarity=0.201 Sum_probs=56.5
Q ss_pred HHHHhc-CCCceEEEEEcCCCCcHHHHHH-HHHHHhccccCcc-eEEEEEeCCCCC-HHHHHHHHHHHhCCC-------c
Q 009411 161 VINALK-NPDVHMIGAYGMAGVGKTMLVK-EVARQAKADKLFD-EVVYAEVSQRPD-VKKIQGQIADKLGLK-------F 229 (535)
Q Consensus 161 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~-~~~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~l~~~-------~ 229 (535)
.++.+. =...+-++|.|.+|+|||+||. .+.++.. -+ .++++-+++..+ ..++.+++...-... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 345554 2234568899999999999964 6666642 44 357888888763 455555655432211 1
Q ss_pred cCCCchH------HHHHHHHHHh-cCCcEEEEEeCCC
Q 009411 230 YEESESG------RARKLCERLK-KEKKILVILDDIW 259 (535)
Q Consensus 230 ~~~~~~~------~~~~l~~~l~-~~~~~LlVlDdv~ 259 (535)
.+.+... ..-.+.+++. .++.+||++||+.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 1111111 1224445554 3789999999984
No 281
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.79 E-value=0.15 Score=49.94 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=33.9
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHHHHhc--cccCcceEEEEEeCCCCCH
Q 009411 165 LKNPDVHMIGAYGMAGVGKTMLVKEVARQAK--ADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 165 L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~--~~~~f~~~~wv~v~~~~~~ 214 (535)
+.+...+++.+.|.||+||||+|..++.... ..+ ..++-++.....++
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g--~~vllid~D~~~~l 62 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPN--EQFLLISTDPAHNL 62 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTT--SCEEEEECCSSCHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCC--CeEEEEECCCCCCh
Confidence 3355678999999999999999999987765 322 23556666544433
No 282
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.78 E-value=0.076 Score=49.81 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=55.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC-CCCHHHHHHHHHH--HhCCCccCCCchHHHHHHHHH
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIAD--KLGLKFYEESESGRARKLCER 244 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~l~~~ 244 (535)
....+++|+|+.|+|||||++.+....... +.+.+++.-.. .+-.... ..+.. .++. ........+...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl-----~~~~l~~~la~a 94 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGE-----DTKSFADALRAA 94 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTT-----TBSCHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCC-----CHHHHHHHHHHH
Confidence 345799999999999999999988765321 12333322111 0000000 00000 0000 011223455566
Q ss_pred HhcCCcEEEEEeCCCCcccccccCCCCCCCCeEEEEeecCchh
Q 009411 245 LKKEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDV 287 (535)
Q Consensus 245 l~~~~~~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTtR~~~v 287 (535)
+.. ++-+|++|...+.+....+... ...|.-|++||.....
T Consensus 95 L~~-~p~illlDEp~D~~~~~~~l~~-~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 95 LRE-DPDVIFVGEMRDLETVETALRA-AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHH-CCSEEEESCCCSHHHHHHHHHH-HHTTCEEEEEECCSSH
T ss_pred Hhh-CCCEEEeCCCCCHHHHHHHHHH-HccCCEEEEEeCcchH
Confidence 654 4668888998755433222111 1235668888876543
No 283
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.77 E-value=0.68 Score=47.04 Aligned_cols=94 Identities=17% Similarity=0.247 Sum_probs=55.4
Q ss_pred HHHhc-CCCceEEEEEcCCCCcHHHHH-HHHHHHhccccCcc-eEEEEEeCCCCC-HHHHHHHHHHHhCCCc-------c
Q 009411 162 INALK-NPDVHMIGAYGMAGVGKTMLV-KEVARQAKADKLFD-EVVYAEVSQRPD-VKKIQGQIADKLGLKF-------Y 230 (535)
Q Consensus 162 ~~~L~-~~~~~vi~I~G~gGiGKTtLa-~~~~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~l~~~~-------~ 230 (535)
++.|. =...+-++|.|..|+|||+|+ ..+.++.. -+ .++++-+++..+ ..++..++...-.... .
T Consensus 153 ID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~----~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~ata 228 (513)
T 3oaa_A 153 VDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRD----SGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATA 228 (513)
T ss_dssp HHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTSS----SSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECT
T ss_pred eccccccccCCEEEeecCCCCCcchHHHHHHHhhcc----CCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECC
Confidence 44444 223456789999999999996 46666422 33 367888888764 4556666544321110 1
Q ss_pred CCCchH------HHHHHHHHHh-cCCcEEEEEeCCC
Q 009411 231 EESESG------RARKLCERLK-KEKKILVILDDIW 259 (535)
Q Consensus 231 ~~~~~~------~~~~l~~~l~-~~~~~LlVlDdv~ 259 (535)
+.+... ..-.+.+++. .++.+||++||+.
T Consensus 229 d~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 229 SESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 111111 1223444443 4789999999984
No 284
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.76 E-value=0.045 Score=49.46 Aligned_cols=24 Identities=38% Similarity=0.373 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
..+++|+|+.|+|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999865
No 285
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.71 E-value=0.077 Score=45.02 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
+-|.|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998753
No 286
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.70 E-value=0.06 Score=50.58 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+++|+|+.|+|||||.+.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987543
No 287
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.69 E-value=0.22 Score=45.04 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~ 197 (535)
...|+|.|+.|+||||+++.+.......
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3688999999999999999999887643
No 288
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.69 E-value=0.052 Score=48.22 Aligned_cols=25 Identities=24% Similarity=0.229 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.+.|.|.|++|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999998764
No 289
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.67 E-value=0.13 Score=48.02 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=29.0
Q ss_pred HHHHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 158 LNDVINALKNP--DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 158 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+..||... ....|.++|++|+|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 44566777643 24579999999999999999999864
No 290
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.67 E-value=0.27 Score=57.70 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=59.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccC------CCchHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE------ESESGRARKLCE 243 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 243 (535)
-++|-|+|+.|+||||||.++....... =...+|+......+..- ++.+|.+.+. ...++.+..+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 4799999999999999999998765433 34578888887777643 7788877554 122334444555
Q ss_pred HHhcCCcEEEEEeCCC
Q 009411 244 RLKKEKKILVILDDIW 259 (535)
Q Consensus 244 ~l~~~~~~LlVlDdv~ 259 (535)
.++.+..-+||+|-|.
T Consensus 1504 ~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHTCCSEEEESCST
T ss_pred HHHcCCCCEEEEccHH
Confidence 5566777899999984
No 291
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.66 E-value=0.073 Score=51.01 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
+...+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345789999999999999999998765
No 292
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.65 E-value=0.066 Score=47.68 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
-.|+|+|..|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998753
No 293
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.63 E-value=0.086 Score=48.54 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+|+|.|+.|+||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999987654
No 294
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.61 E-value=0.074 Score=47.62 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=21.6
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 159 NDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 159 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
+.+.........--|+|+|.+|+|||||...+.+..
T Consensus 19 ~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 333333334445577899999999999999988653
No 295
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.58 E-value=0.068 Score=49.77 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
..+++|+|+.|.|||||.+.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 296
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.55 E-value=0.057 Score=51.07 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
..+++|+|+.|+|||||++.+..-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999998754
No 297
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.53 E-value=0.096 Score=47.60 Aligned_cols=37 Identities=22% Similarity=0.165 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~ 210 (535)
.|.+.|.||+||||+|..++.....++ ++ +..+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G-~~-V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG-VR-VMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT-CC-EEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC-CC-EEEEEeCC
Confidence 477899999999999999988876543 33 44455544
No 298
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.52 E-value=0.077 Score=49.95 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
...+++|+|+.|.|||||.+.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 299
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.50 E-value=0.079 Score=45.54 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999753
No 300
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.50 E-value=0.069 Score=49.54 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
...+++|+|+.|.|||||.+.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999998754
No 301
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.50 E-value=0.066 Score=50.26 Aligned_cols=26 Identities=15% Similarity=0.301 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+++|+|+.|+|||||.+.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34689999999999999999987543
No 302
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.48 E-value=0.1 Score=45.98 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998754
No 303
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.46 E-value=0.12 Score=53.18 Aligned_cols=45 Identities=9% Similarity=-0.147 Sum_probs=32.9
Q ss_pred cccHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 152 ESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 152 ~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
..|.+..+.+.+... ..+..+|.+.|++|+||||+|+.+......
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 345555555555442 234578999999999999999999998763
No 304
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.45 E-value=0.067 Score=50.70 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..++.|+|++|+|||||+..++...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998654
No 305
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.44 E-value=0.17 Score=49.18 Aligned_cols=48 Identities=21% Similarity=0.201 Sum_probs=34.5
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHH
Q 009411 166 KNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK 215 (535)
Q Consensus 166 ~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~ 215 (535)
.+...+++.+.|.||+||||+|..++......+ ..++-|+.....++.
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g--~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVR--RSVLLLSTDPAHNLS 59 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSS--SCEEEEECCSSCHHH
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCC--CcEEEEECCCCCChh
Confidence 345578889999999999999999988766432 246666666544433
No 306
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.41 E-value=0.086 Score=48.68 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...|+|.|..|+||||+++.++....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999998763
No 307
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.40 E-value=0.059 Score=47.33 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998763
No 308
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.40 E-value=0.055 Score=49.08 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|+|+.|.|||||.+.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999987643
No 309
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.40 E-value=0.062 Score=49.71 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|+|+.|.|||||.+.++.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999987643
No 310
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.36 E-value=0.062 Score=50.56 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|+|+.|.|||||++.+..-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999997644
No 311
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.36 E-value=0.063 Score=50.26 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|+|+.|+|||||.+.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999987543
No 312
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.35 E-value=0.064 Score=49.22 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|+|+.|.|||||.+.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998654
No 313
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.34 E-value=0.085 Score=52.26 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
....+++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445799999999999999999999754
No 314
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.31 E-value=0.072 Score=49.79 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+++|+|+.|+|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997643
No 315
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.31 E-value=0.28 Score=49.93 Aligned_cols=95 Identities=16% Similarity=0.189 Sum_probs=55.8
Q ss_pred HHHHhc-CCCceEEEEEcCCCCcHHHHHH-HHHHHhccccCcce-EEEEEeCCCCC-HHHHHHHHHHHhCCC-------c
Q 009411 161 VINALK-NPDVHMIGAYGMAGVGKTMLVK-EVARQAKADKLFDE-VVYAEVSQRPD-VKKIQGQIADKLGLK-------F 229 (535)
Q Consensus 161 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~-~~~~~~~~~~~f~~-~~wv~v~~~~~-~~~~~~~i~~~l~~~-------~ 229 (535)
.++.+. =...+-++|.|.+|+|||+||. .+.++.. -+. ++++-+++..+ ..++.+.+...-... .
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~at 240 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVAS 240 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEEC
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEEC
Confidence 344454 1233568899999999999964 6666542 453 57888888763 455555554421111 1
Q ss_pred cCCCchH------HHHHHHHHHh-cCCcEEEEEeCCC
Q 009411 230 YEESESG------RARKLCERLK-KEKKILVILDDIW 259 (535)
Q Consensus 230 ~~~~~~~------~~~~l~~~l~-~~~~~LlVlDdv~ 259 (535)
.+.+... ..-.+.+++. .++.+||++||+.
T Consensus 241 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 241 ASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 1111111 1224445554 3789999999984
No 316
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.29 E-value=0.073 Score=49.90 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+++|+|+.|+|||||.+.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999997643
No 317
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.28 E-value=0.067 Score=49.75 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|+|+.|.|||||.+.++.-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987654
No 318
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.22 E-value=0.075 Score=50.16 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+++|+|+.|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997643
No 319
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.18 E-value=0.097 Score=46.20 Aligned_cols=26 Identities=19% Similarity=0.036 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
.++.|+|+.|+||||++..++.....
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999777766543
No 320
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.16 E-value=0.095 Score=49.20 Aligned_cols=38 Identities=16% Similarity=0.351 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~ 210 (535)
++|+|.|-||+||||+|..++.....++ ..++-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G--~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG--KTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC--CcEEEEcCCC
Confidence 5788899999999999999998766432 2466666653
No 321
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.14 E-value=0.097 Score=49.80 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~ 210 (535)
.++|+|.|-||+||||+|..++......+ ..++-|+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G--~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMG--KKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 46888899999999999999988765432 2356666654
No 322
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.13 E-value=0.083 Score=44.86 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 323
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.12 E-value=0.087 Score=44.98 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|.|+|.+|+|||||...+....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999998753
No 324
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.12 E-value=0.088 Score=52.27 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
++|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999997754
No 325
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.06 E-value=0.23 Score=51.66 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..++.|.|++|+|||||++.++....
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999987654
No 326
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.04 E-value=0.081 Score=49.78 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
...+++|+|+.|+|||||.+.++.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999998754
No 327
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.96 E-value=0.075 Score=49.44 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|+|+.|.|||||.+.++.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999987654
No 328
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.94 E-value=0.048 Score=57.74 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
-|.++|++|+|||+||+.+++..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 58899999999999999998764
No 329
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.85 E-value=0.18 Score=46.49 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=30.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHH
Q 009411 173 IGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK 215 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~ 215 (535)
|+|.|-||+||||+|..++......+ ..++-|+.....+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChH
Confidence 56699999999999999998876543 346777776555443
No 330
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.79 E-value=0.079 Score=49.45 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|+|+.|+|||||.+.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998653
No 331
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.78 E-value=0.08 Score=50.19 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|+|+.|.|||||.+.++.-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999997654
No 332
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.76 E-value=0.059 Score=54.53 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
..+|.|+|.+|+||||++..++.....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999887653
No 333
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.74 E-value=0.096 Score=49.36 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.++|+|+.|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999997653
No 334
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.73 E-value=0.1 Score=45.88 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999998754
No 335
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.70 E-value=0.11 Score=45.37 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 336
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.70 E-value=0.12 Score=46.55 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
....|.|+|.+|+|||||+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998764
No 337
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.69 E-value=0.11 Score=44.21 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 009411 173 IGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~ 194 (535)
|+|+|.+|+|||||...+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998654
No 338
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=91.67 E-value=0.15 Score=52.44 Aligned_cols=48 Identities=23% Similarity=0.278 Sum_probs=35.8
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC
Q 009411 161 VINALKN-PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP 212 (535)
Q Consensus 161 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~ 212 (535)
.++.|.. ...+-++|.|..|+|||+|+.++.+... -+.++++-+++..
T Consensus 211 vID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~----~~v~V~~~iGER~ 259 (578)
T 3gqb_A 211 ILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSN----ADVVVYVGSGERG 259 (578)
T ss_dssp HHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECH
T ss_pred hhhhcccccCCCEEeeeCCCCccHHHHHHHHHhccC----CCEEEEEEecccH
Confidence 3455541 2346789999999999999999988743 3568888888774
No 339
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.64 E-value=0.11 Score=44.31 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.-|+|+|.+|+|||||...+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 457899999999999999998754
No 340
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.59 E-value=0.2 Score=49.09 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
+..+|+|+|.+|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 467999999999999999999987543
No 341
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.59 E-value=0.11 Score=44.83 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
+...|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999764
No 342
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.58 E-value=0.17 Score=44.30 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 159 NDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 159 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
..+.+ +......-|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34445 34455567889999999999999999854
No 343
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.58 E-value=0.11 Score=44.22 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
-|+|+|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999988654
No 344
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.58 E-value=0.1 Score=44.98 Aligned_cols=23 Identities=35% Similarity=0.348 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
--|+|+|.+|+|||||...+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46889999999999999998754
No 345
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.56 E-value=0.11 Score=44.28 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
-|+|+|.+|+|||||...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 346
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.53 E-value=0.15 Score=44.54 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
.....|+|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998754
No 347
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.52 E-value=0.081 Score=48.53 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
...+|+|.|+.|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998765
No 348
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.47 E-value=0.11 Score=45.24 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=24.5
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHH
Q 009411 160 DVINALKN-PDVHMIGAYGMAGVGKTMLVKEVAR 192 (535)
Q Consensus 160 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~ 192 (535)
++.+.+.. ....-|+|+|.+|+|||||...+..
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 33443444 4556788999999999999988764
No 349
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.44 E-value=0.11 Score=44.39 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999998653
No 350
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.40 E-value=0.11 Score=44.53 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999998764
No 351
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.38 E-value=0.12 Score=44.19 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
-|+|+|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 352
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.38 E-value=0.11 Score=45.49 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||+..+.+..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999888753
No 353
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.34 E-value=0.11 Score=45.41 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||+..+....
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999998753
No 354
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.34 E-value=0.12 Score=47.12 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
-.++|.|++|+||||+|+.+.....
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4579999999999999999998765
No 355
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.32 E-value=0.11 Score=44.40 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVAR 192 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~ 192 (535)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999863
No 356
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.21 E-value=0.14 Score=53.19 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+|.++|++|.||||+|+.+.....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988764
No 357
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.20 E-value=0.11 Score=44.98 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999865
No 358
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.20 E-value=0.13 Score=51.43 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
...+++|+|+.|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4569999999999999999999873
No 359
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.20 E-value=0.1 Score=49.01 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
..+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998754
No 360
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.18 E-value=0.12 Score=44.69 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...-|+|+|.+|+|||||...+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34568899999999999999998754
No 361
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.17 E-value=0.12 Score=46.76 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.+|+|.|+.|+||||+++.+.....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999987654
No 362
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.17 E-value=0.1 Score=50.46 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..++++|+|+.|.|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999998754
No 363
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.17 E-value=0.18 Score=52.67 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+++|+|+.|+|||||++.++....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 347899999999999999999998765
No 364
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.15 E-value=0.13 Score=44.49 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||...+....
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999998653
No 365
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.11 E-value=0.11 Score=44.57 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 366
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.11 E-value=0.11 Score=44.32 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 009411 172 MIGAYGMAGVGKTMLVKEVAR 192 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~ 192 (535)
-|+|+|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998864
No 367
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.05 E-value=0.13 Score=44.04 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 457899999999999999998653
No 368
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.05 E-value=0.15 Score=50.03 Aligned_cols=111 Identities=9% Similarity=0.070 Sum_probs=58.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 249 (535)
..+++|+|+.|+|||||.+.+....... ....+ +.+.+..... .......+...............+...|.. .
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i-~t~ed~~e~~--~~~~~~~v~q~~~~~~~~~~~~~La~aL~~-~ 196 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHI-LTIEDPIEFV--HESKKCLVNQREVHRDTLGFSEALRSALRE-D 196 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEE-EEEESSCCSC--CCCSSSEEEEEEBTTTBSCHHHHHHHHTTS-C
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEE-EEccCcHHhh--hhccccceeeeeeccccCCHHHHHHHHhhh-C
Confidence 3599999999999999999988765421 11122 2222221100 000000000000001112233456666664 6
Q ss_pred cEEEEEeCCCCcccccccCCCCCCCCeEEEEeecCchh
Q 009411 250 KILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDV 287 (535)
Q Consensus 250 ~~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTtR~~~v 287 (535)
+=+|++|...+.+.+..+... ...|..||+||.....
T Consensus 197 PdvillDEp~d~e~~~~~~~~-~~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 197 PDIILVGEMRDLETIRLALTA-AETGHLVFGTLHTTSA 233 (356)
T ss_dssp CSEEEESCCCSHHHHHHHHHH-HHTTCEEEEEESCSSH
T ss_pred cCEEecCCCCCHHHHHHHHHH-HhcCCEEEEEEccChH
Confidence 788999999876555443111 1336668888887654
No 369
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.04 E-value=0.13 Score=45.22 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.--|+|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 3467899999999999999998754
No 370
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.04 E-value=0.13 Score=43.84 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999875
No 371
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.02 E-value=0.28 Score=44.82 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
...|+|.|+.|+||||+++.+++....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999988754
No 372
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.01 E-value=0.13 Score=50.37 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|.|+.|.|||||.+.++.-.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 4689999999999999999998643
No 373
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.97 E-value=0.14 Score=45.31 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
--|+|+|.+|+|||||...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998853
No 374
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.96 E-value=0.09 Score=50.47 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+++|+|+.|.|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 44789999999999999999987643
No 375
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.95 E-value=0.13 Score=45.27 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
+...|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999764
No 376
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.91 E-value=0.13 Score=45.37 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
...|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999864
No 377
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.90 E-value=0.12 Score=44.64 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
--|+|+|.+|+|||||...+.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998864
No 378
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.90 E-value=0.12 Score=49.25 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+++|+|+.|.|||||.+.++.-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999998654
No 379
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.87 E-value=0.073 Score=49.92 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
+...|+|.|..|+||||+++.+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999988765
No 380
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.87 E-value=0.13 Score=45.21 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||.+.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999997666543
No 381
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.86 E-value=0.35 Score=43.43 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=30.4
Q ss_pred EEEE-EcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHH
Q 009411 172 MIGA-YGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK 215 (535)
Q Consensus 172 vi~I-~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~ 215 (535)
+|+| .+-||+||||+|..++......+ .++-++.....+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~ 43 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSAT 43 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHH
Confidence 4555 48899999999999998876543 57777777655443
No 382
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.85 E-value=0.16 Score=44.02 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
-+-|.|.|.+|+||||||..+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 357889999999999999999875
No 383
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.85 E-value=0.14 Score=43.81 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.-|+|+|.+|+|||||...+....
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999997653
No 384
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.84 E-value=0.19 Score=44.60 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVAR 192 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~ 192 (535)
...-|+|+|.+|+|||||...+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345688999999999999998864
No 385
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.84 E-value=0.15 Score=50.16 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+++|+|+.|.|||||.+.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34789999999999999999987643
No 386
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.82 E-value=0.14 Score=44.15 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..-|.|+|.+|+|||||...+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998764
No 387
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.77 E-value=0.14 Score=44.78 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.+.+|+|+.|.|||||+..++--.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999987654
No 388
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.76 E-value=0.13 Score=44.72 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.--|.|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3567899999999999999998753
No 389
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.72 E-value=1.7 Score=44.23 Aligned_cols=88 Identities=13% Similarity=0.153 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccccccccccCCChhHHhHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCcccccc
Q 009411 65 IEQRVENWLITADEILDAAARIIEGTEDTTNRLCPNLNTRYQVSKKAAREVKAAAELLQQEGRFDKVSYRTVPEDVWLTS 144 (535)
Q Consensus 65 ~~~~v~~wl~~l~~~~~d~ed~ld~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 144 (535)
....+..|..++.++.-.+|-.+|--. .. ....+..+..++..+..++.++....
T Consensus 161 ~~~~~~~~r~~l~~~~a~iEa~iDf~e--d~----~~~~~~~~~~~i~~l~~~l~~~~~~~------------------- 215 (462)
T 3geh_A 161 LAHPIRQLRANCLDILAEIEARIDFEE--DL----PPLDDEAIISDIENIAAEISQLLATK------------------- 215 (462)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSSS--SS----CCCCTTTHHHHHHHHHHHHHHHTTTH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc--cC----ChhhHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 367788999999999888888877322 10 01122345556667776666652111
Q ss_pred cCCcccccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 145 IKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 145 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
. ..+.. ..+. .|+|+|.+|+|||||...+....
T Consensus 216 ----------~--~~~~~----r~~~-kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 216 ----------D--KGELL----RTGL-KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp ----------H--HHHHH----HHCE-EEEEEECTTSSHHHHHHHHHHHH
T ss_pred ----------h--hhhhh----cCCC-EEEEEcCCCCCHHHHHHHHhCCC
Confidence 0 00011 1233 37899999999999999998764
No 390
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.70 E-value=0.18 Score=43.59 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..-|+|+|.+|+|||||...+....
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568899999999999999998763
No 391
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.69 E-value=0.16 Score=49.59 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=24.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
-....+++|+|++|+|||||.+.+.....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 34568999999999999999999986543
No 392
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.68 E-value=0.15 Score=44.73 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||...+....
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999998753
No 393
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=90.67 E-value=0.16 Score=45.40 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
.+|.|.|+.|+||||+++.++.....
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 58999999999999999999998763
No 394
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.67 E-value=0.15 Score=44.56 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999998754
No 395
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.63 E-value=0.13 Score=44.82 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.--|.|+|.+|+|||||...+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3467899999999999999998754
No 396
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.63 E-value=0.11 Score=45.04 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||...+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999998753
No 397
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.61 E-value=0.21 Score=49.44 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
....+++|+|+.|+|||||++.+.....
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4457899999999999999999987654
No 398
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.61 E-value=0.14 Score=50.14 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|.|+.|+|||||.+.++.-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999998643
No 399
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.57 E-value=0.16 Score=49.87 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+++|.|+.|.|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34689999999999999999998643
No 400
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.57 E-value=0.15 Score=44.85 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.--|+|+|.+|+|||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998753
No 401
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.57 E-value=0.38 Score=43.51 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
...|.+.|+.|+||||+++.+.+....
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999998763
No 402
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.56 E-value=0.14 Score=44.27 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||...+....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999998653
No 403
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.56 E-value=0.24 Score=47.42 Aligned_cols=33 Identities=18% Similarity=0.401 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 158 LNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 158 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
+++|.+.+. ..+++|+|+.|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 455666554 3588999999999999999998 54
No 404
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.56 E-value=0.15 Score=44.73 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
....|+|+|.+|+|||||...+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578899999999999999998764
No 405
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.52 E-value=0.16 Score=44.26 Aligned_cols=23 Identities=30% Similarity=0.275 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
-|+|+|.+|+|||||...+.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999988653
No 406
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.51 E-value=0.16 Score=44.77 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||...+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 457899999999999999998764
No 407
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.50 E-value=0.16 Score=49.89 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+++|.|+.|.|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999998643
No 408
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.45 E-value=0.16 Score=44.04 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
--|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998865
No 409
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.42 E-value=0.12 Score=45.92 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVA 191 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~ 191 (535)
.--|+|+|.+|+|||||...+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999999985
No 410
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.41 E-value=0.17 Score=50.07 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|+|+.|.|||||.+.++.-.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 4689999999999999999998643
No 411
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.38 E-value=0.34 Score=49.37 Aligned_cols=86 Identities=19% Similarity=0.245 Sum_probs=50.5
Q ss_pred ceEEEEEcCCCCcHHHHHH-HHHHHhccccCcc-eEEEEEeCCCCC-HHHHHHHHHHHhCC--------CccCCCc----
Q 009411 170 VHMIGAYGMAGVGKTMLVK-EVARQAKADKLFD-EVVYAEVSQRPD-VKKIQGQIADKLGL--------KFYEESE---- 234 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~-~~~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~l~~--------~~~~~~~---- 234 (535)
.+-++|.|.+|+|||+||. .+.++.. -+ .++++-+++..+ ..++.+++...-.. +.++...
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 3567899999999999964 6666542 34 357888888753 34444444331100 0111111
Q ss_pred -hHHHHHHHHHHh-cCCcEEEEEeCCC
Q 009411 235 -SGRARKLCERLK-KEKKILVILDDIW 259 (535)
Q Consensus 235 -~~~~~~l~~~l~-~~~~~LlVlDdv~ 259 (535)
....-.+.+++. .++.+||++||+.
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 112334444443 3789999999974
No 412
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.36 E-value=0.27 Score=51.59 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+|.|.|++|+||||+|+.+.....
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 456899999999999999999998765
No 413
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.36 E-value=0.16 Score=44.13 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..-|+|+|.+|+|||||...+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568899999999999999998653
No 414
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.36 E-value=0.16 Score=44.10 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..-|.|+|.+|+|||||...+....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3568899999999999999998754
No 415
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.34 E-value=0.15 Score=50.32 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...++|+|+.|.|||||++.+.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46889999999999999999987754
No 416
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.33 E-value=0.14 Score=44.73 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998865
No 417
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.32 E-value=0.16 Score=43.91 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|.|+|.+|+|||||...+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999998753
No 418
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.32 E-value=0.17 Score=43.83 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||...+....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 467899999999999999998754
No 419
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.30 E-value=0.16 Score=44.84 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..--|+|+|.+|+|||||...+....
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34568899999999999999998763
No 420
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.26 E-value=0.17 Score=49.86 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
...+++|.|+.|.|||||.+.++.-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3468999999999999999999864
No 421
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.22 E-value=0.15 Score=45.22 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..-|+|+|.+|+|||||...+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568899999999999999998654
No 422
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.21 E-value=0.15 Score=44.05 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
..-|+|+|.+|+|||||...+...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998754
No 423
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.18 E-value=0.54 Score=42.13 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..|+|-|.-|+||||+++.+++...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4688999999999999999998875
No 424
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.14 E-value=0.17 Score=45.26 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..-|+|+|.+|+|||||+..+....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3568899999999999999988753
No 425
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.11 E-value=0.28 Score=49.23 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=24.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
.....+++|+|+.|+|||||.+.+.....
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 34557999999999999999999988654
No 426
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.11 E-value=0.18 Score=44.31 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||...+....
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999998754
No 427
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.11 E-value=0.17 Score=45.39 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.--|+|+|.+|+|||||+..+....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999998753
No 428
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.11 E-value=0.16 Score=50.11 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|.|+.|.|||||.+.++.-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 4689999999999999999998643
No 429
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.10 E-value=0.17 Score=44.99 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..-|+|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998764
No 430
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.05 E-value=0.17 Score=44.98 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...-|+|+|.+|+|||||...+....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34568899999999999999998754
No 431
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.03 E-value=0.18 Score=44.58 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.--|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3457899999999999999998764
No 432
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.03 E-value=0.18 Score=44.44 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.--|+|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998764
No 433
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.00 E-value=0.18 Score=45.29 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999998764
No 434
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.00 E-value=0.17 Score=44.42 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.--|+|+|.+|+|||||...+....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568899999999999999998764
No 435
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=89.99 E-value=0.41 Score=46.89 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=27.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCC
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~ 210 (535)
....++.+.|.||+||||+|..++......++ .++-|+...
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~--rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGL--KVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSC--CEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCC--eEEEEeCCC
Confidence 34456667799999999999998877654321 344555433
No 436
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.97 E-value=0.17 Score=45.94 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009411 172 MIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
-|.|+|.+|+|||+|+..+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4679999999999999998764
No 437
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.97 E-value=0.34 Score=43.09 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=30.1
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCH
Q 009411 171 HMIGAY-GMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (535)
Q Consensus 171 ~vi~I~-G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 214 (535)
++|+|+ +-||+||||+|..++......+ ..++-++.....+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g--~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSG--YNIAVVDTDPQMSL 44 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCC--CeEEEEECCCCCCH
Confidence 577777 7899999999999988766432 24666776654443
No 438
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.95 E-value=0.2 Score=48.99 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=24.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+..+|+|+|.+|+|||||+..+.....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45668999999999999999999986653
No 439
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.93 E-value=0.2 Score=51.35 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+|.++|++|+||||+++.+.....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346889999999999999999998765
No 440
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.91 E-value=0.18 Score=44.48 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||...+....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998764
No 441
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.90 E-value=0.19 Score=44.24 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|.|+|.+|+|||||...+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 457899999999999999998753
No 442
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.90 E-value=0.15 Score=49.92 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+++|.|+.|.|||||.+.++.-.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 4689999999999999999998643
No 443
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.82 E-value=0.18 Score=45.56 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVAR 192 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~ 192 (535)
.--|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34688999999999999999874
No 444
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.81 E-value=0.38 Score=47.59 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=31.8
Q ss_pred CCceEEEEEc-CCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCC
Q 009411 168 PDVHMIGAYG-MAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (535)
Q Consensus 168 ~~~~vi~I~G-~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 213 (535)
.+.++|+|+| -||+||||+|..++.....++ ..++.++.....+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g--~rVlliD~D~~~~ 185 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMG--KKVFYLNIEQCGT 185 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHT--CCEEEEECCTTCC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCC--CCEEEEECCCCCC
Confidence 3568888885 999999999999987765432 2467777664333
No 445
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.76 E-value=0.19 Score=44.15 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.--|+|+|.+|+|||||...+....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998754
No 446
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.75 E-value=0.13 Score=46.12 Aligned_cols=26 Identities=15% Similarity=0.182 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
.....|+|+|.+|+|||||.+.+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999987643
No 447
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=89.72 E-value=0.42 Score=50.51 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=29.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeC
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVS 209 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~ 209 (535)
...+++.+.|.||+||||+|..++......+ ..++.|+..
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G--~rVLlvd~D 45 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQG--KRVLLVSTD 45 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCC--CcEEEEECC
Confidence 4467889999999999999999887765432 235555554
No 448
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.72 E-value=0.2 Score=43.97 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..-|+|+|.+|+|||||...+....
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998653
No 449
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=89.71 E-value=0.16 Score=44.84 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=21.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 167 NPDVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
....--|+|+|.+|+|||||...+...
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhC
Confidence 334456889999999999999998643
No 450
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.68 E-value=0.57 Score=42.85 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVAR 192 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~ 192 (535)
+.+.|.|+.|+||||+...+.-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 6789999999999987765543
No 451
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.66 E-value=0.19 Score=44.35 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 346889999999999999999874
No 452
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.64 E-value=0.2 Score=44.41 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...-|+|+|.+|+|||||...+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34678899999999999999998653
No 453
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=89.59 E-value=0.39 Score=50.09 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhcc
Q 009411 153 SRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (535)
Q Consensus 153 gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 196 (535)
.|.+..+.+.+... .....+|.+.|++|+||||+|+.+......
T Consensus 353 ~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 353 TRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 34444445555442 234578999999999999999999887543
No 454
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.56 E-value=0.21 Score=43.89 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999998764
No 455
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=89.50 E-value=0.58 Score=45.86 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=32.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhc--cccCcceEEEEEeCCCCCHHH
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK--ADKLFDEVVYAEVSQRPDVKK 216 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~--~~~~f~~~~wv~v~~~~~~~~ 216 (535)
....++...|-||+||||+|..++.... ..+ ..++-|+.....++..
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G--~rVLLvD~D~~~~l~~ 64 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPN--KQFLLISTDPAHNLSD 64 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTT--SCEEEEECCSSCCHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCC--CeEEEEECCCCCCHHH
Confidence 3456677779999999999999887765 332 2356666655555544
No 456
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.49 E-value=0.23 Score=43.33 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 168 PDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
....-|+|+|.+|+|||||...+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 445678899999999999999998654
No 457
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.48 E-value=0.17 Score=44.87 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||...+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999998653
No 458
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.43 E-value=0.16 Score=48.71 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 009411 172 MIGAYGMAGVGKTMLVKEVAR 192 (535)
Q Consensus 172 vi~I~G~gGiGKTtLa~~~~~ 192 (535)
-|+|+|..|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 348999999999999999764
No 459
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.38 E-value=0.22 Score=48.78 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+++|+|+.|+|||||.+.+.+...
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 447899999999999999999999865
No 460
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.35 E-value=0.21 Score=44.54 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||...+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999998754
No 461
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=89.34 E-value=0.51 Score=45.78 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=30.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC
Q 009411 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP 212 (535)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~ 212 (535)
+...+++.+.|.||+||||+|..++......+ ..+.-++.....
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G--~rVllvD~D~~~ 59 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVR--SSVLLISTDPAH 59 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHTSS--SCEEEEECCTTC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CeEEEEECCCCc
Confidence 34456777889999999999999988766432 235556555443
No 462
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.32 E-value=0.24 Score=52.31 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
...+|.|.|++|+||||+|+.+.....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998763
No 463
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.32 E-value=0.14 Score=50.25 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
...+++|+|+.|.|||||.+.++.-
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999999864
No 464
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=89.31 E-value=0.53 Score=45.50 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=31.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKK 216 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~ 216 (535)
..++...|.||+||||+|..++......+ ..++-|+.....++..
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G--~rVLlvD~D~~~~l~~ 58 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSG--KKTLVISTDPAHSLSD 58 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEECCSSCCHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCC--CcEEEEeCCCCcCHHH
Confidence 35667779999999999999988765432 2366666655555543
No 465
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.27 E-value=0.17 Score=44.85 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 356789999999999999876654
No 466
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=89.27 E-value=0.22 Score=47.75 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999864
No 467
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.27 E-value=0.22 Score=49.45 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
...+++|+|+.|+|||||.+.++.-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3478999999999999999999853
No 468
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.23 E-value=0.26 Score=44.88 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999765
No 469
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.21 E-value=0.34 Score=46.36 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 158 LNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 158 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
++++.+++.. .+++|+|++|+|||||.+.+....
T Consensus 160 v~~lf~~l~g---eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLKG---KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHSS---SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhcC---CeEEEECCCCCcHHHHHHHhcccc
Confidence 4555666543 588999999999999999997654
No 470
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.18 E-value=0.18 Score=49.79 Aligned_cols=26 Identities=31% Similarity=0.426 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhc
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 195 (535)
..+++|+|+.|.|||||++.+.....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35899999999999999999987644
No 471
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=89.18 E-value=0.55 Score=50.23 Aligned_cols=61 Identities=25% Similarity=0.223 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHH
Q 009411 157 TLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (535)
Q Consensus 157 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 222 (535)
..+.+...|... .+..|+||+|+|||+.+.++....-.. ...+.++...+..+..++..+.
T Consensus 194 Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 194 QKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHH
Confidence 344555555433 467899999999997666655543322 2246666665555556655553
No 472
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.10 E-value=0.31 Score=43.40 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+|+|+|++|+||+|+|..+.+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45799999999999999999987654
No 473
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=89.08 E-value=0.24 Score=43.60 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
....|+|+|.+|+|||||...+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998754
No 474
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.06 E-value=0.22 Score=44.10 Aligned_cols=24 Identities=29% Similarity=0.160 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999998754
No 475
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.05 E-value=0.22 Score=44.47 Aligned_cols=24 Identities=21% Similarity=0.283 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.-|+|+|.+|+|||||...+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999988643
No 476
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.00 E-value=0.23 Score=43.73 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
--|+|+|.+|+|||||...+.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999876
No 477
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=88.98 E-value=0.26 Score=45.29 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45678999999999999999998653
No 478
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.96 E-value=0.24 Score=44.28 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..-|+|+|.+|+|||||...+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3568899999999999999998653
No 479
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=88.94 E-value=0.23 Score=44.47 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||...+.+..
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999988653
No 480
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.91 E-value=0.14 Score=44.64 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=9.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
--|+|+|.+|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999988754
No 481
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=88.87 E-value=0.24 Score=44.57 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
--|+|+|.+|+|||||...+....
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 457899999999999999998754
No 482
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.86 E-value=0.23 Score=44.14 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.--|+|+|.+|+|||||+..+....
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC
Confidence 4568899999999999999997653
No 483
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=88.86 E-value=0.22 Score=44.21 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999998754
No 484
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.85 E-value=0.23 Score=48.60 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.+++|+|++|+|||||.+.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 589999999999999999987543
No 485
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=88.78 E-value=0.24 Score=43.99 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.-|+|+|.+|+|||||...+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999998753
No 486
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.75 E-value=0.17 Score=43.99 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
--|+|+|.+|+|||||...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999864
No 487
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=88.68 E-value=0.23 Score=44.72 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
.--|+|+|.+|+|||||...+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998754
No 488
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=88.51 E-value=0.24 Score=43.62 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
--|+|+|.+|+|||||...+...
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998754
No 489
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=88.45 E-value=0.24 Score=43.34 Aligned_cols=34 Identities=26% Similarity=0.239 Sum_probs=24.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCC
Q 009411 173 IGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP 212 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~ 212 (535)
+.|.|.+|+|||++|.+++.. . ..++|+.-...+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~-----~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A-----PQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C-----SSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHHhc-C-----CCeEEEecCCCC
Confidence 679999999999999999854 2 135566544433
No 490
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.44 E-value=0.22 Score=50.70 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
...+++|+|+.|+|||||++.++.-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44789999999999999999998764
No 491
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=88.41 E-value=0.28 Score=46.12 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
...|+|+|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999765
No 492
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=88.37 E-value=0.32 Score=44.28 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=32.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLK 228 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 228 (535)
..+|+|.|+.|+||||+|+.++...... ++ + .+++..++...+.+
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~-------~~------d-~~~~~~~a~~~g~~ 58 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIH-------FY------D-DDILKLASEKSAVG 58 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCE-------EE------C-HHHHHHHHHCC---
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCc-------EE------c-HHHHHHHHHHcCCC
Confidence 4699999999999999999999887532 11 3 45666666666554
No 493
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=88.17 E-value=0.52 Score=44.73 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
....|+|+|.+|+|||||...+....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 35689999999999999999998653
No 494
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=88.09 E-value=0.29 Score=47.03 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 009411 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~~~~~ 193 (535)
....|+|+|.+|+|||||...+...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3578999999999999999999865
No 495
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=88.06 E-value=0.34 Score=43.80 Aligned_cols=27 Identities=30% Similarity=0.206 Sum_probs=21.6
Q ss_pred eEEEEEc-CCCCcHHHHHHHHHHHhccc
Q 009411 171 HMIGAYG-MAGVGKTMLVKEVARQAKAD 197 (535)
Q Consensus 171 ~vi~I~G-~gGiGKTtLa~~~~~~~~~~ 197 (535)
++|.|.| -||+||||++..++.....+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~ 29 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAA 29 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4677777 58999999999998876543
No 496
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.98 E-value=0.34 Score=40.90 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
..+.+|+|+.|.||||+..+++--.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3688999999999999999987543
No 497
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=87.93 E-value=1.6 Score=39.82 Aligned_cols=38 Identities=16% Similarity=-0.014 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 154 RMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 154 R~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
|....+.+..++... -+.|+|+.|.|||.+|..+....
T Consensus 95 ~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 444444444444332 27789999999999999888765
No 498
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.91 E-value=0.19 Score=48.87 Aligned_cols=105 Identities=16% Similarity=0.137 Sum_probs=54.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhccccCcceEEEEEeCCCCCHHHHHHHHHHHhCCCccCCCchHHHHHHHHHHhcCCc
Q 009411 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (535)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (535)
..++|+|+.|.|||||++.+...... -.+.+.+.-......... + +.++.-. . ........+...+.. ++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~---~~g~i~i~~~~e~~~~~~-~---~~i~~~~-g-gg~~~r~~la~aL~~-~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK---EERIISIEDTEEIVFKHH-K---NYTQLFF-G-GNITSADCLKSCLRM-RP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT---TSCEEEEESSCCCCCSSC-S---SEEEEEC-B-TTBCHHHHHHHHTTS-CC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC---CCcEEEECCeeccccccc-h---hEEEEEe-C-CChhHHHHHHHHhhh-CC
Confidence 58999999999999999999876542 234555442211110000 0 0000000 0 112233455556653 67
Q ss_pred EEEEEeCCCCcccccccCCCCCCCCeEEEEeecCch
Q 009411 251 ILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQD 286 (535)
Q Consensus 251 ~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTtR~~~ 286 (535)
-+|++|.+.+.+.++.+.. ....+.-+|+||....
T Consensus 242 ~ilildE~~~~e~~~~l~~-~~~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 242 DRIILGELRSSEAYDFYNV-LCSGHKGTLTTLHAGS 276 (330)
T ss_dssp SEEEECCCCSTHHHHHHHH-HHTTCCCEEEEEECSS
T ss_pred CEEEEcCCChHHHHHHHHH-HhcCCCEEEEEEcccH
Confidence 7899999877544443321 1111222666665543
No 499
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=87.90 E-value=0.57 Score=43.90 Aligned_cols=38 Identities=26% Similarity=0.386 Sum_probs=26.7
Q ss_pred HHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 009411 157 TLNDVINALKN--PDVHMIGAYGMAGVGKTMLVKEVARQA 194 (535)
Q Consensus 157 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~ 194 (535)
.+.+++..+.. .....|+++|.+|+|||||...+....
T Consensus 24 ~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 24 KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444444442 234678899999999999999998653
No 500
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.83 E-value=0.24 Score=49.74 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 009411 173 IGAYGMAGVGKTMLVKEVARQ 193 (535)
Q Consensus 173 i~I~G~gGiGKTtLa~~~~~~ 193 (535)
++|+|+.|+|||||.+.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999998764
Done!