Query 009413
Match_columns 535
No_of_seqs 151 out of 2040
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 04:38:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 3E-32 1E-36 290.0 28.1 451 2-526 10-479 (491)
2 2xut_A Proton/peptide symporte 100.0 7.6E-31 2.6E-35 281.5 23.9 462 2-528 9-512 (524)
3 1pw4_A Glycerol-3-phosphate tr 100.0 9.2E-28 3.1E-32 251.8 26.3 397 5-525 28-440 (451)
4 4gc0_A D-xylose-proton symport 99.9 2E-26 6.9E-31 244.8 23.5 408 39-532 53-476 (491)
5 3o7q_A L-fucose-proton symport 99.9 3.2E-25 1.1E-29 231.7 31.0 349 5-478 26-407 (438)
6 2gfp_A EMRD, multidrug resista 99.9 4.1E-24 1.4E-28 219.0 17.1 347 8-477 3-351 (375)
7 2cfq_A Lactose permease; trans 99.9 1.3E-23 4.3E-28 219.2 11.9 393 4-524 6-405 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 3.8E-13 1.3E-17 140.3 14.7 179 4-207 251-433 (451)
9 3o7q_A L-fucose-proton symport 99.3 1.1E-11 3.8E-16 128.7 16.5 167 4-200 257-425 (438)
10 2cfq_A Lactose permease; trans 99.3 6.6E-12 2.2E-16 130.4 12.8 174 7-207 222-399 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 4.3E-10 1.5E-14 118.7 12.2 184 8-210 286-474 (491)
12 4gc0_A D-xylose-proton symport 98.9 2.5E-08 8.5E-13 105.1 17.8 182 5-209 276-464 (491)
13 2gfp_A EMRD, multidrug resista 98.8 1.7E-09 5.8E-14 109.9 3.2 162 5-194 199-363 (375)
14 2xut_A Proton/peptide symporte 98.4 1.6E-06 5.4E-11 92.0 11.6 137 340-518 58-198 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=3e-32 Score=289.97 Aligned_cols=451 Identities=16% Similarity=0.199 Sum_probs=299.1
Q ss_pred CCcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhh-----cCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-cccchHHH
Q 009413 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDV-----VKMSNSSAAKTVNSWCGFTSMLPLVLAPLADS-YWDRYSTI 75 (535)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Grk~~~ 75 (535)
+|+|.++.+.+..+++.+++|++.++++.|++++ +|+|..+.+++.+.+.++..++++++|+++|| + |||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~ 88 (491)
T 4aps_A 10 GQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAV 88 (491)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHH
Confidence 5788899999999999999999999999999988 99999999999999999999999999999999 6 999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccch
Q 009413 76 LAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKK 155 (535)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r 155 (535)
..+.++..++.+++++++ +.+.++++|+++|++.|...|...++++|.+|+ ++ ++|
T Consensus 89 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~----~~r 144 (491)
T 4aps_A 89 FWGGVLIMLGHIVLALPF-------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDE-------HD----RRR 144 (491)
T ss_dssp HHHHHHHHHHHHHHHSCC-------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-------CT----THH
T ss_pred HHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc-------cc----ccc
Confidence 999999999999998887 889999999999999999999999999999998 22 247
Q ss_pred hhhhhhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHH-
Q 009413 156 SLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKA- 234 (535)
Q Consensus 156 ~~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 234 (535)
+.+++.++.+.++|..++|.+++++.++.||++.|++.++..+++.++.+...++..+++.++.+++....+..+....
T Consensus 145 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (491)
T 4aps_A 145 DAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKV 224 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHC
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHH
Confidence 8899999999999999999999999998999999999877766665555544333222111100000011111111100
Q ss_pred ------------HHhcccccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHH
Q 009413 235 ------------AASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIW 302 (535)
Q Consensus 235 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (535)
...... ..+.. +...... .... .... .......+. ......++++......++
T Consensus 225 g~~l~~~~~~~~~~~~~~------~~~~~--~~~~~~~-~~~~--~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 289 (491)
T 4aps_A 225 SLAVAGFIAIIVVMNLVG------WNSLP--AYINLLT-IVAI--AIPV-FYFAWMISS---VKVTSTEHLRVVSYIPLF 289 (491)
T ss_dssp CCCCHHHHHHHHHHHHHS------SCCTT--HHHHHHH-HHHH--HHHH-HHHHHHC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc------Ccccc--cchhhhh-HHHH--HHHH-HHHHHHhhc---ccccHHHHHHHHHHHHHH
Confidence 000000 00000 0000000 0000 0000 000000000 000012334444455555
Q ss_pred HHHHHHHHHhcCCCceeeeecccccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHH
Q 009413 303 TMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGI 382 (535)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~ 382 (535)
.....++..+.+..+.+..+... ..+. .....+.+...+.+..++..++.+++.+++.|| +....+.+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r------~~~~~~~~~~ 359 (491)
T 4aps_A 290 IAAVLFWAIEEQGSVVLATFAAE---RVDS-SWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKN------QPSSPTKFAV 359 (491)
T ss_dssp HHHHHHHHHHGGGGTHHHHHHHH---SCCC-SSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHH---Hhcc-CccCHHHHhccchHHHHHHHHHHHHHHHHHhcc------CCCchHHHHH
Confidence 55566666666655543332211 1110 113456666777777888888887765554443 2344566778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 009413 383 GMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFG 462 (535)
Q Consensus 383 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 462 (535)
+.++.++++.++....... +.....+.+++++.+++.+++.+...+..++++.|..|++.||+++|+.+....
T Consensus 360 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 360 GLMFAGLSFLLMAIPGALY-------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp HHHHHHHHHTTTHHHHHHC-------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8888888877766543210 001134667788888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 009413 463 VGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRT 526 (535)
Q Consensus 463 lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 526 (535)
+|+.+++.+.+++.+ .+....|++.+++++++.++.+...++.+++.
T Consensus 433 ~g~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 433 VGSALNAQLVTLYNA-----------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp HHHHHHHHHGGGGGG-----------------SSTTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887664 22345677777777777777777766665543
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=7.6e-31 Score=281.53 Aligned_cols=462 Identities=22% Similarity=0.371 Sum_probs=287.4
Q ss_pred CCcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcC------CChhhHHHHHHHHHHHHhhhhhhhHHhhhhcc-cchHH
Q 009413 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVK------MSNSSAAKTVNSWCGFTSMLPLVLAPLADSYW-DRYST 74 (535)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grk~~ 74 (535)
.++|.++.+.+..++.++++|++.++++.|+++++| +|..+.+++.+.+.++..++++++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~ 87 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNT 87 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHH
Confidence 467888999999999999999999999999999999 999999999999999999999999999999 7 99999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccc
Q 009413 75 ILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDK 154 (535)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 154 (535)
+..+.++..++.+++.++.. +.+.++++|++.|++.+...|...++++|.+|+ +++ .+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~r---~~ 145 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFEH------------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ-------SNK---SL 145 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTSS------------CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST-------TTT---TH
T ss_pred HHHHHHHHHHHHHHHHHhcc------------cHHHHHHHHHHHHHhccccchhHHHHHHHHcCc-------cch---HH
Confidence 99999999999888887641 677889999999999999999999999999998 221 12
Q ss_pred hhhhhhhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHH
Q 009413 155 KSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKA 234 (535)
Q Consensus 155 r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (535)
+...+++++.+.++|..++|.+++++.+..||++.|++.++..+++.+..+...++.++++++++ +..+..+....
T Consensus 146 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 221 (524)
T 2xut_A 146 AQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPK----DPHGFLPVIRS 221 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCc----cchhHHHHHHH
Confidence 34556669999999999999999999988899999998887766665555544443322222211 11111111000
Q ss_pred HHhccccccc-----------------ccCCCCC--------------C-ccchhh--ccccccccccCCCCCccccccc
Q 009413 235 AASKLKNSKI-----------------VLPIDNS--------------D-TVELEL--QEQKPLCGNKKLGSSKELDEDE 280 (535)
Q Consensus 235 ~~~~~~~~~~-----------------~~~~~~~--------------~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 280 (535)
..+++..... ....... | .....| .+ ..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------------- 283 (524)
T 2xut_A 222 ALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLE-RA----------------- 283 (524)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHH-HS-----------------
T ss_pred HHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHh-hh-----------------
Confidence 0000000000 0000000 0 000001 00 00
Q ss_pred CCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeeecccccccCCCccccCccccccchhHHHHHHHHhhhhHH
Q 009413 281 YPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKIL 360 (535)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 360 (535)
....++...+++++.......+.....++..+.+..+.+..+....+... + .+.+.+...+.+..++..++.+++.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (524)
T 2xut_A 284 RKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVL 359 (524)
T ss_dssp CCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC-
T ss_pred hccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhh
Confidence 00011111233444444444444445555556665554444322222110 0 2445566667778888888888876
Q ss_pred HhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 009413 361 IPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEF 440 (535)
Q Consensus 361 ~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~ 440 (535)
.+..+|.++ +.++.+.+.++.++.+++++++...+... +.....+.+++++.+++.+++++...+..+++
T Consensus 360 ~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 429 (524)
T 2xut_A 360 YPAIERMGV---KLTALRKMGAGIAITGLSWIVVGTIQLMM-------DGGSALSIFWQILPYALLTFGEVLVSATGLEF 429 (524)
T ss_dssp --------------CCHHHHHTHHHHHHHHHHTTTTTTTTT-------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555432 24555667778888877776654421100 00012356677888999999999999999999
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc-ccchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 009413 441 FYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSD-DMKEARLDLYYWVLALASALSLLLYVMLC 519 (535)
Q Consensus 441 ~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 519 (535)
+.|.+|++.||+++|+.++..++|+.+++.+.+.+.+.+. .+|.++ ..+. ....|++.+++++++.+++++..
T Consensus 430 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 503 (524)
T 2xut_A 430 AYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYA 503 (524)
T ss_dssp HHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccccc--cccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998765210 012110 0010 12236777777888777777766
Q ss_pred ccccccccc
Q 009413 520 KFFKSRTDN 528 (535)
Q Consensus 520 ~~~~~~~~~ 528 (535)
++.++++++
T Consensus 504 ~~~~~~~~~ 512 (524)
T 2xut_A 504 RSYQMQDHY 512 (524)
T ss_dssp ---------
T ss_pred HHhccchhh
Confidence 666555433
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=9.2e-28 Score=251.79 Aligned_cols=397 Identities=12% Similarity=0.001 Sum_probs=254.8
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
+.++.+++..+...+..+.+.+.++.+. +++ .|..+.+++.+.+.++..++++++|+++||+ |||++++.+.++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHH
Confidence 4455566666666666666656655444 567 9999999999999999999999999999995 999999999999999
Q ss_pred HHHHHHh----hcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhh
Q 009413 85 GLVALTS----TAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFK 160 (535)
Q Consensus 85 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~ 160 (535)
+.+++++ ++ +++.++++|+++|++.+...+...++++|.+|+ ++|+++.+
T Consensus 105 ~~~~~~~~~~~~~-------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------------~~r~~~~~ 158 (451)
T 1pw4_A 105 VMLFMGFVPWATS-------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------------KERGGIVS 158 (451)
T ss_dssp HHHHHHHCHHHHS-------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------------THHHHHHH
T ss_pred HHHHHHhhhhccc-------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------------hhhhHHHH
Confidence 9999988 66 888999999999999999999999999999998 67999999
Q ss_pred hhhhHhhhhhhhhhhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhccccccccCCCcccc--cchHHHHHHHHHHHHh
Q 009413 161 WWYFGVCSGSLLGVTVMSYIQDTFG-WVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKC--TVSLINIVQAIKAAAS 237 (535)
Q Consensus 161 ~~~~~~~lg~~i~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 237 (535)
+.+.+.++|..++|.+++++.+..| ||+.|++.++..++..++.++..++.+++....+++ ++...+ .
T Consensus 159 ~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 229 (451)
T 1pw4_A 159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD---------D 229 (451)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccc---------c
Confidence 9999999999999999999888888 999999888766655444444333322211110000 000000 0
Q ss_pred cccccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcc---hhhhHHHhhHHhHH-HHHHHHHHHhc
Q 009413 238 KLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHL---VKNAKVVLKLFPIW-TMLLMFAVIFQ 313 (535)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~-~~~~~~~~~~~ 313 (535)
.+. +.. +. .+.++.. ....+..+...... .....+.....
T Consensus 230 ~~~--------~~~--~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (451)
T 1pw4_A 230 YNE--------KAE--QE--------------------------LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD 273 (451)
T ss_dssp ---------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chh--------hhh--cc--------------------------cccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000 00 0000000 01112222222111 11111112211
Q ss_pred CCCceeeeecccccccCCCccccCc---cccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHH-H
Q 009413 314 QPATFFTKQGMTMKRNIGSNFKIPP---ATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSI-I 389 (535)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~-~ 389 (535)
..+.+ .... ++.+. +.+.....++.+++..+.+++.+++.+ ++.+.+.++..+.. +
T Consensus 274 ~~~~~-------~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~---------~~~~~~~~~~~~~~~~ 333 (451)
T 1pw4_A 274 WSPTY-------LKEV----KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR---------GNRGATGVFFMTLVTI 333 (451)
T ss_dssp HHHHH-------BTTB----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---------TCHHHHHHHHHHHHHH
T ss_pred HHHHH-------HHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCchhHHHHHHHHHHH
Confidence 11111 1111 11222 233344445555555555554433200 12233444444443 4
Q ss_pred HHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHH-HHHHH
Q 009413 390 AMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGV-GSFLS 468 (535)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l-g~~lg 468 (535)
+++++... ...+.+...+..++.|++.....+..+++..|..|++.||+++|+.+....+ |..++
T Consensus 334 ~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~ 399 (451)
T 1pw4_A 334 ATIVYWMN--------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 399 (451)
T ss_dssp HHHHTTSC--------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHH
Confidence 44333221 0124556667777888888888888889999999999999999999999999 99999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 009413 469 ALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSR 525 (535)
Q Consensus 469 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 525 (535)
+.+.+.+.+. .++...|++.+++.+++.+..+...++.+++
T Consensus 400 ~~~~g~l~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (451)
T 1pw4_A 400 SAIVGYTVDF----------------FGWDGGFMVMIGGSILAVILLIVVMIGEKRR 440 (451)
T ss_dssp HHHHHHHHHS----------------SCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----------------cCcHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999998872 1245667777777777777666655443333
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=2e-26 Score=244.76 Aligned_cols=408 Identities=12% Similarity=0.030 Sum_probs=226.5
Q ss_pred ChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhccccccccc-----CccccchHHHHH
Q 009413 39 SNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTT-----NKISSSSAFLFW 113 (535)
Q Consensus 39 s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 113 (535)
+..+.+++.+++.++..++++++|+++||+ |||++++.+.+++.++.++++++......... ...+.|++.+++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 131 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI 131 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence 346778999999999999999999999995 99999999999999999998864311100000 001118899999
Q ss_pred HHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhcc--------ccc
Q 009413 114 SLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQD--------TFG 185 (535)
Q Consensus 114 ~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~--------~~g 185 (535)
+|+++|+|.|+..+..+.+++|..|+ ++|++..+..+.+..+|..+++.++..+.. ..+
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~-------------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPA-------------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDG 198 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCG-------------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCH-------------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchh
Confidence 99999999999999999999999998 789999999999999999998887665432 234
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccccc---ccCCCcccccchHHHHHHHHHHHHhcccccccccCCCCCCccchhhcccc
Q 009413 186 WVLGFAIPTIAMVTSTAFFSFGSQIYR---YKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLPIDNSDTVELELQEQK 262 (535)
Q Consensus 186 w~~~f~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (535)
|+..+.+..+..++.++..+. .++.+ ..+.+.+ +..+.......+....... . +.....+ .
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~-~peSp~~L~~~~~~~-------~a~~~l~~~~~~~~~~~~~-----~--~~~~~~~-~ 262 (491)
T 4gc0_A 199 WRYMFASECIPALLFLMLLYT-VPESPRWLMSRGKQE-------QAEGILRKIMGNTLATQAV-----Q--EIKHSLD-H 262 (491)
T ss_dssp HHHHHHTTHHHHHHHHHHGGG-SCCCHHHHHHTTCHH-------HHHHHHHHHHHHHHHHHHH-----H--HHHHHHH-H
T ss_pred hHHHhhhhhhhhhhhhhhhhc-CCCChHHHHHcCchh-------HHHHhHHHhcCCchhHHHH-----H--HHHHHHH-h
Confidence 776666555544433333222 22111 1111111 1111111111110000000 0 0000000 0
Q ss_pred ccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeeecccccccCCCccccCccccc
Q 009413 263 PLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQ 342 (535)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 342 (535)
.. ++........+++.........+... ..++ ....+........+. .........
T Consensus 263 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~ 318 (491)
T 4gc0_A 263 GR-----------------KTGGRLLMFGVGVIVIGVMLSIFQQF--VGIN----VVLYYAPEVFKTLGA-STDIALLQT 318 (491)
T ss_dssp HH-----------------HHTTHHHHSCCTHHHHHHHHHHHHHH--TCHH----HHHHHHHHHHHHSSC-CHHHHHHHH
T ss_pred hh-----------------hhhhHHHHhcccHHHHHHHHHHHHHH--hhhh----HHHhcchHHHHhcCC-CccchhhHH
Confidence 00 00000001111111111111111100 0000 000000011111110 000111112
Q ss_pred cchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHH
Q 009413 343 SAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQ 422 (535)
Q Consensus 343 ~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (535)
....+..++...+...+.++++|| +.+..+...+.++++.+...... .......++..
T Consensus 319 ~~~~~~~~~~~~~~~~l~dr~Grr-----------~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~ 376 (491)
T 4gc0_A 319 IIVGVINLTFTVLAIMTVDKFGRK-----------PLQIIGALGMAIGMFSLGTAFYT-----------QAPGIVALLSM 376 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSH-----------HHHHHHHHHHHHHHHHHHHHHHT-----------TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCc-----------chhccchHHHHHHHHHHHHHHhc-----------ccchHHHHHHH
Confidence 222333334444444444433333 44556666666665554433210 01122222222
Q ss_pred HHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHH
Q 009413 423 YILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYW 502 (535)
Q Consensus 423 ~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (535)
.++.........|..+.+..|.+|++.|++++|+.+..+++++.+++.+.+.+.+.... ....+....|+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~----------~~~~~~~~~~~ 446 (491)
T 4gc0_A 377 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL----------VAHFHNGFSYW 446 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH----------HHHHTTCHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhhhhhHHHH
Confidence 23333333344577788999999999999999999999999999999988876541100 00112234677
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccccc
Q 009413 503 VLALASALSLLLYVMLCKFFKSRTDNLDNE 532 (535)
Q Consensus 503 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 532 (535)
+++++++++.+..+++.||+|+|+.||+++
T Consensus 447 i~~~~~~~~~i~~~~~~PETkg~tLeei~~ 476 (491)
T 4gc0_A 447 IYGCMGVLAALFMWKFVPETKGKTLEELEA 476 (491)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTTCCHHHHGG
T ss_pred HHHHHHHHHHHHHHheecCCCCCCHHHHHH
Confidence 888999999999999999999999998766
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=3.2e-25 Score=231.69 Aligned_cols=349 Identities=8% Similarity=0.009 Sum_probs=227.7
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
+.+..++...++..+....+.+. .+++.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||++++.+.+++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYAL 103 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHH
Confidence 34455555556666665544444 4557779999999999999999999999999999999995 999999999999999
Q ss_pred HHHHH---HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 85 GLVAL---TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 85 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
+.+++ ..++ +++.++++|++.|++.|...+...++++|.+|+ ++|+++.++
T Consensus 104 ~~~~~~~~~~~~-------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------------~~r~~~~~~ 157 (438)
T 3o7q_A 104 GAALFWPAAEIM-------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------------SSGHFRLNL 157 (438)
T ss_dssp HHHHHHHHHHTT-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS-------------TTHHHHHHH
T ss_pred HHHHHHhccccc-------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc-------------hhHHHHHHH
Confidence 99888 6666 899999999999999999999999999999998 679999999
Q ss_pred hhhHhhhhhhhhhhhhhhhc-cccc-------------------------hhHHHHHHHHHHHHHHHHHHhccccccccC
Q 009413 162 WYFGVCSGSLLGVTVMSYIQ-DTFG-------------------------WVLGFAIPTIAMVTSTAFFSFGSQIYRYKS 215 (535)
Q Consensus 162 ~~~~~~lg~~i~~~~~~~l~-~~~g-------------------------w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (535)
.+.+.++|..++|.+++++. +..+ ||+.|++.+...++..++.+..+. ++.+
T Consensus 158 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~ 235 (438)
T 3o7q_A 158 AQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQ 235 (438)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Cccc
Confidence 99999999999999999987 5554 999997766555444443333211 1111
Q ss_pred CCcccccchHHHHHHHHHHHHhcccccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHH
Q 009413 216 DETLKCTVSLINIVQAIKAAASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVV 295 (535)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (535)
+++++++ ...+ ....+.+ . .++ +..
T Consensus 236 ~~~~~~~-~~~~--------------------------~~~~~~~---~------------------------~~~-~~~ 260 (438)
T 3o7q_A 236 SDNHSDA-KQGS--------------------------FSASLSR---L------------------------ARI-RHW 260 (438)
T ss_dssp TTCCCCS-STTS--------------------------HHHHHHH---H------------------------TTC-SHH
T ss_pred ccccccc-cccc--------------------------hhhhHHH---H------------------------HhC-hHH
Confidence 1110000 0000 0000000 0 011 111
Q ss_pred hhH-HhHHHHHHHHHHHhcCCCceeeeecccccccCCCccccC---ccccccchhHHHHHHHHhhhhHHHhhhhHhhhcc
Q 009413 296 LKL-FPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIP---PATLQSAITVSIILLMPLYDKILIPFIHIIIRCE 371 (535)
Q Consensus 296 ~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~ 371 (535)
+.. +...+............+.++. +.. ++.+ .+.+.....++.+++.++.+++.+++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~------ 324 (438)
T 3o7q_A 261 RWAVLAQFCYVGAQTACWSYLIRYAV------EEI----PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAP------ 324 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHS----TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh------hcc----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 111 1111111112122222221101 111 1112 2233333444455555555555443322
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHH
Q 009413 372 KGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRT 451 (535)
Q Consensus 372 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg 451 (535)
.+.+..+.++..+++++.... .+. +.+...++.+++.+...|..+++..|..|++ ++
T Consensus 325 -----~~~~~~~~~~~~~~~~~~~~~----------------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 381 (438)
T 3o7q_A 325 -----HKVLAAYALIAMALCLISAFA----------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK 381 (438)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHC----------------CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HH
T ss_pred -----hHHHHHHHHHHHHHHHHHHHc----------------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc
Confidence 245566666666666555442 222 3344457778888888899999999999988 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009413 452 MGFALYTSVFGVGSFLSALLITVIEAL 478 (535)
Q Consensus 452 ~~~g~~~~~~~lg~~lg~~~~~~i~~~ 478 (535)
.++++.. ...+|+.+++.+.+++.+.
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999887 6679999999999998874
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.91 E-value=4.1e-24 Score=218.96 Aligned_cols=347 Identities=10% Similarity=0.044 Sum_probs=228.8
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHH
Q 009413 8 IMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLV 87 (535)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~ 87 (535)
+.++...++..+......+.++.+ .+++|.|..+.+++.+.+.++..+++++.|+++||+ |||++++.+.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 445666677777776666666654 568999999999999999999999999999999995 999999999999999999
Q ss_pred HHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhh
Q 009413 88 ALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVC 167 (535)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 167 (535)
+..+++ +.+.+++.|++.|++.+...+...+++.|.+|+ ++|+++.+..+...+
T Consensus 81 ~~~~~~-------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 134 (375)
T 2gfp_A 81 VAVTTS-------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYER-------------TQLRHANSLLNMGIL 134 (375)
T ss_dssp HHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------------SSCCSHHHHHHHHHH
T ss_pred HHHHhc-------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH-------------HHHHHHHHHHHHHHH
Confidence 998887 899999999999999999999999999999988 578999999999999
Q ss_pred hhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccccccC
Q 009413 168 SGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLP 247 (535)
Q Consensus 168 lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (535)
+|..++|.+++++.++.+|++.|++.++..++..+..+...+ ++++++++ . ++
T Consensus 135 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~--------------~~------- 187 (375)
T 2gfp_A 135 VSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMP---ETRPVDAP---R--------------TR------- 187 (375)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSC---CCSTTTCC---C--------------CC-------
T ss_pred HHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCc---ccCCCCcc---c--------------cc-------
Confidence 999999999999999899999998776655444332222222 11111110 0 00
Q ss_pred CCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhH-HHHHHHHHHHhcCCCceeeeecccc
Q 009413 248 IDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPI-WTMLLMFAVIFQQPATFFTKQGMTM 326 (535)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (535)
....+.+ ..+.|+.+..... ..............+.++. +..+.
T Consensus 188 ------~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~ 232 (375)
T 2gfp_A 188 ------LLTSYKT----------------------------LFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMG-AVLGL 232 (375)
T ss_dssp ------TTTCSTH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSH-HHHHH
T ss_pred ------HHHHHHH----------------------------HhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 0000000 1111222222212 2222222222222222111 10111
Q ss_pred cccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHH-HHHHHHHHHHHHHHHhhhh
Q 009413 327 KRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFL-SIIAMIIAAIVETKRLEMN 405 (535)
Q Consensus 327 ~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~ 405 (535)
+. ...+.+.....++.++..++.+++ .+|.++ ++..+..+ ...+..........
T Consensus 233 ~~-------~~~g~~~~~~~~~~~~~~~~~~~l----~~r~~~---------~~~~~~~~~~~~~~~~~~~~~~~----- 287 (375)
T 2gfp_A 233 SS-------MTVSILFILPIPAAFFGAWFAGRP----NKRFST---------LMWQSVICCLLAGLLMWIPDWFG----- 287 (375)
T ss_dssp HH-------HHHHHHHHTHHHHHHHHHHHHHTT----TTHHHH---------HHHHHHHHHHHTSSSSSHHHHHH-----
T ss_pred CH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---------HHHHHHHHHHHHHHHHHHHhhhc-----
Confidence 10 112233334444555555555443 233211 22333332 22222211111000
Q ss_pred ccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009413 406 QQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~ 477 (535)
..+.+...+..++.+++.+...+...++..|..| +.||+++|+.+..+.+|..+++.+.+.+.+
T Consensus 288 -------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 288 -------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred -------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1244556677788899999999999999999999 889999999999999999999998888765
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.89 E-value=1.3e-23 Score=219.25 Aligned_cols=393 Identities=12% Similarity=0.021 Sum_probs=221.8
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
.|..+.+....++....+..+.++++.|+++++|+|..+.+++.+.+.++..++++++|+++||+ ||||+++.+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML 84 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 35667777777777777777788999999999999999999999999999999999999999995 99999998887765
Q ss_pred HHHHHH---HhhcccccccccCccccch-HHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhh
Q 009413 84 VGLVAL---TSTAFSWAWSTTNKISSSS-AFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFF 159 (535)
Q Consensus 84 ~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~ 159 (535)
++.... .+.. .. ..++.++++.+++.|...+.......+..++ . . ++|+..+
T Consensus 85 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~-~---~~~~~~~ 140 (417)
T 2cfq_A 85 VMFAPFFIFIFGP-------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK-------V-S---RRSNFEF 140 (417)
T ss_dssp SCHHHHHHHTHHH-------------HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH-------H-H---HHHTCCH
T ss_pred HHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-------h-h---hhcccch
Confidence 432211 1211 11 1123455555555554444444444444332 1 0 2356667
Q ss_pred hhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcc
Q 009413 160 KWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKL 239 (535)
Q Consensus 160 ~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (535)
+..+...++|..++|.+++++.+ .+|++.|++.++..++..+..+...++ ++++.+++ .
T Consensus 141 g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~--------------- 199 (417)
T 2cfq_A 141 GRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD---APSSATVA--N--------------- 199 (417)
T ss_dssp HHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC---CSCSSCSS--S---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc---cccccccc--c---------------
Confidence 77777789999999999998876 589998887655433322222211111 11100000 0
Q ss_pred cccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHH-HHHHHHHhcCCCce
Q 009413 240 KNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTM-LLMFAVIFQQPATF 318 (535)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 318 (535)
+.+ . +..+.+..++.+ . .++ ++.+......+. ...+....++.+.+
T Consensus 200 ~~~---~--~~~~~~~~~~~~---~------------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (417)
T 2cfq_A 200 AVG---A--NHSAFSLKLALE---L------------------------FRQ-PKLWFLSLYVIGVSCTYDVFDQQFANF 246 (417)
T ss_dssp SSS---S--CCCCCCHHHHHH---H------------------------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc---c--ccccccHHHHHH---H------------------------hcC-CchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 000000000000 0 111 222222211111 11111111111111
Q ss_pred eeeecccccccCCCcccc-CccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 009413 319 FTKQGMTMKRNIGSNFKI-PPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIV 397 (535)
Q Consensus 319 ~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 397 (535)
+..+ .... + .+. ..+....++.+..++...+.+++.+++.+| +.+..+.++.++.++....
T Consensus 247 ~~~~---~~~~--~-~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~- 308 (417)
T 2cfq_A 247 FTSF---FATG--E-QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSF- 308 (417)
T ss_dssp HHHT---SSSH--H-HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHH---Hhcc--C-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHH-
Confidence 1100 0000 0 000 012223333344444555555554443322 3455566666665544432
Q ss_pred HHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 009413 398 ETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALY-TSVFGVGSFLSALLITVIE 476 (535)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~lg~~lg~~~~~~i~ 476 (535)
..+.+.+++..++.+++.....+..+.+..|.+|++.||++.+.. +..+++|+.++|.+.|++.
T Consensus 309 ---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 309 ---------------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp ---------------CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred ---------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 123445555556667776666677788999999999999999994 7888999999999999887
Q ss_pred hhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009413 477 ALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKS 524 (535)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 524 (535)
+. .++...|.+.+++++++.++.+...++.++
T Consensus 374 ~~----------------~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 374 ES----------------IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HH----------------SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred Hh----------------cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 61 234556777777777777766655554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.46 E-value=3.8e-13 Score=140.31 Aligned_cols=179 Identities=12% Similarity=0.042 Sum_probs=151.5
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcc--cchHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYW--DRYSTILAFSFI 81 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Grk~~~~~~~~~ 81 (535)
.|.++.+.+..++..+.++++..+++.|+++.+|++..+.++..+...++..++.++.|+++|| + |||+.+..+.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 3567788888888899999999999999998899999999999999999999999999999999 8 999988887776
Q ss_pred HH-HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhh
Q 009413 82 YV-VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFK 160 (535)
Q Consensus 82 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~ 160 (535)
.. ++.++..+.+.. +.+.+.+..++.|++.+...+...+++.|.+|+ +.|+++.+
T Consensus 330 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~~ 385 (451)
T 1pw4_A 330 LVTIATIVYWMNPAG-----------NPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------------KAAGTAAG 385 (451)
T ss_dssp HHHHHHHHTTSCCTT-----------CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------------THHHHHHH
T ss_pred HHHHHHHHHHHhccc-----------CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-------------hhhhhHHH
Confidence 66 565555554311 566677777888988888888888999999998 57999999
Q ss_pred hhhhHhhh-hhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhc
Q 009413 161 WWYFGVCS-GSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFG 207 (535)
Q Consensus 161 ~~~~~~~l-g~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 207 (535)
..+...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+..
T Consensus 386 ~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 386 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999988777766665554443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.35 E-value=1.1e-11 Score=128.67 Aligned_cols=167 Identities=15% Similarity=0.077 Sum_probs=138.1
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHH-hhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTY-LTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIY 82 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 82 (535)
.|.++...+..++....++.+..+++.| +++.+|.+..++++..+.+.++..++.++.|+++|| +|||+++..+.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHH
Confidence 3556777777788888888888999999 888889999999999999999999999999999999 59999999999888
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
.++.++..+.+ +.+.+ +..++.|++.+...|...++..|.+|+ + ++.+.++.
T Consensus 336 ~~~~~~~~~~~-------------~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~ 387 (438)
T 3o7q_A 336 MALCLISAFAG-------------GHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQ-------------D-TKYGSSFI 387 (438)
T ss_dssp HHHHHHHHHCC-------------HHHHH-HHHHHHHHHHTTHHHHHHHHHHSSCGG-------------G-HHHHHHHH
T ss_pred HHHHHHHHHcC-------------CcHHH-HHHHHHHHHHHHHHHHHHHHHHhhccc-------------c-ccchhhHH
Confidence 88877777665 44443 444778888899999999999998887 2 56666655
Q ss_pred hhHhhhhhhhhhhhhhhhccccc-hhHHHHHHHHHHHHH
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFG-WVLGFAIPTIAMVTS 200 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~g-w~~~f~~~~~~~~~~ 200 (535)
. ...+|..++|.+.+++.+..| ++..|++..++.++.
T Consensus 388 ~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 388 V-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp H-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 5 567999999999999999988 999998766554443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.32 E-value=6.6e-12 Score=130.37 Aligned_cols=174 Identities=7% Similarity=0.016 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCC---ChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 7 CIMLIVIAGKERFAFKGVASNLVTYLTDVVKM---SNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~---s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
++...+..++....++....+++.|+.+.++. +....+...+...++..++.++.|+++||+ |||+++..+.++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence 44444444444445555556788888766653 244556777777778888999999999995 99999998888887
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh-h
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW-W 162 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~ 162 (535)
++.++..+.+ +.+.+++..++.+++.+...+....+++|.+|+ +.|+++.+. +
T Consensus 301 ~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------------~~~g~~~g~~~ 354 (417)
T 2cfq_A 301 VRIIGSSFAT-------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------------RFSATIYLVCF 354 (417)
T ss_dssp HHHHHHTTCC-------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------------HHHHHHHHHHH
T ss_pred HHHHHHHHhc-------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------------HHHHHHHHHHH
Confidence 7766666554 666677777777777666667778899999998 678998888 5
Q ss_pred hhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhc
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFG 207 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 207 (535)
+....+|..++|.++|++.++.|++..|.+.++..+++.++.+..
T Consensus 355 ~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 355 CFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp TTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 778889999999999999888889888887777666665554443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.08 E-value=4.3e-10 Score=118.71 Aligned_cols=184 Identities=16% Similarity=0.097 Sum_probs=133.7
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHH-----HHHHHH
Q 009413 8 IMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTIL-----AFSFIY 82 (535)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~-----~~~~~~ 82 (535)
+.+.+...+....+......++.|+++.++.+..+.++......++..++.++.|+++||+ |||+... .+.++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~ 364 (491)
T 4aps_A 286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFA 364 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHH
Confidence 4445555666666777778899999988888878888888888999999999999999995 9986544 666666
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
.++.++........ ...+.. +.+.+.+..++.|++.+...|...+++.|.+|+ +.|+++.++.
T Consensus 365 ~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-------------~~~g~~~g~~ 427 (491)
T 4aps_A 365 GLSFLLMAIPGALY--GTSGKV--SPLWLVGSWALVILGEMLISPVGLSVTTKLAPK-------------AFNSQMMSMW 427 (491)
T ss_dssp HHHHTTTHHHHHHC--CCCTTC--CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT-------------TCSSSSTHHH
T ss_pred HHHHHHHHHHHHhc--CCCCCc--cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------------HHHHHHHHHH
Confidence 66655554432100 000001 566777788889999999999999999999998 5689999999
Q ss_pred hhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcccc
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQI 210 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~ 210 (535)
+...++|..++|.+.+++.+. ++...|.+.+...+++.+..+...++
T Consensus 428 ~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 428 FLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887654 66667776666555555555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.91 E-value=2.5e-08 Score=105.05 Aligned_cols=182 Identities=8% Similarity=0.011 Sum_probs=121.0
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
+..........+..+..+.......+++.+..+.+............+...++.++++++.||+ |||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence 3344444445555554444445555666667888888888887888888999999999999995 999999999888887
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHH-HHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCL-ISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
+.+.......... +....++..++ ......+..|....+.+|.+|. +.|+++.++.+
T Consensus 355 ~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt-------------~~R~~~~g~~~ 412 (491)
T 4gc0_A 355 GMFSLGTAFYTQA---------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN-------------AIRGKALAIAV 412 (491)
T ss_dssp HHHHHHHHHHTTC---------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT-------------TTHHHHHHHHH
T ss_pred HHHHHHHHHhccc---------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH-------------hHHHHHHHHHH
Confidence 7766554332110 11222222222 2222233447778999999998 67999999999
Q ss_pred hHhhhhhhhhhhhhhhhcc------ccchhHHHHHHHHHHHHHHHHHHhccc
Q 009413 164 FGVCSGSLLGVTVMSYIQD------TFGWVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~------~~gw~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
....++..+++.+.+.+.+ ..++...|++.+...+++.+..++..|
T Consensus 413 ~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 413 AAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp HHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 9999999988887766543 234555677666666665555555444
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.78 E-value=1.7e-09 Score=109.90 Aligned_cols=162 Identities=9% Similarity=-0.068 Sum_probs=126.7
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHH-HH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFI-YV 83 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~-~~ 83 (535)
|.++...+..++....++.+..+++.|+++++|.|..+.+.+.+...++..++.++.|+++||+ || + +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~-~-~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST-L-MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH-H-HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-H-HHHHHHHHHH
Confidence 4566777777888888888889999999988999999999999999999999999999999995 87 2 2333322 22
Q ss_pred HHHH--HHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 84 VGLV--ALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 84 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
.+.. ........ +.+.+++..++.|++.+...+...+++.|.+|+ +|+++.+.
T Consensus 276 ~~~~~~~~~~~~~~-----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--------------~~g~~~g~ 330 (375)
T 2gfp_A 276 AGLLMWIPDWFGVM-----------NVWTLLVPAALFFFGAGMLFPLATSGAMEPFPF--------------LAGTAGAL 330 (375)
T ss_dssp TSSSSSHHHHHHHH-----------HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHH--------------HHHHHHHH
T ss_pred HHHHHHHHhhhccc-----------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCc--------------ccchHHHH
Confidence 2222 12221100 556667778888999999999999999998764 58999999
Q ss_pred hhhHhhhhhhhhhhhhhhhccccchhHHHHHHH
Q 009413 162 WYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPT 194 (535)
Q Consensus 162 ~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~ 194 (535)
.+...++|..++|.+.+.+.+..+|...+.+..
T Consensus 331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999999988778887776543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.35 E-value=1.6e-06 Score=92.04 Aligned_cols=137 Identities=9% Similarity=0.068 Sum_probs=96.5
Q ss_pred ccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccc-hhHH
Q 009413 340 TLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPL-SIFW 418 (535)
Q Consensus 340 ~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 418 (535)
.+.+...++..+..++.+++.+++ .++.+.+.++.++..++.++... .. +.+.
T Consensus 58 ~~~~~~~~~~~~~~~~~G~l~dr~----------~g~r~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 111 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGWIADRF----------FGKYNTILWLSLIYCVGHAFLAI----------------FEHSVQG 111 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTTS----------SCSHHHHHHHHHHHHHHHHHHHH----------------TSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------hcchHHHHHHHHHHHHHHHHHHH----------------hcccHHH
Confidence 344444555556666666654443 02335667777777777776665 23 5667
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchh
Q 009413 419 LLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFAL---YTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEA 495 (535)
Q Consensus 419 ~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~ 495 (535)
+++..++.|++.+...+...+++.|.+|++.|+++.+. .+....+|..+++.+.+.+.+. .
T Consensus 112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~----------------~ 175 (524)
T 2xut_A 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN----------------F 175 (524)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT----------------S
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------c
Confidence 77888899999999999999999999999999877666 8888999999999998887651 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 009413 496 RLDLYYWVLALASALSLLLYVML 518 (535)
Q Consensus 496 ~~~~~~~~~~~~~~~~~i~~~~~ 518 (535)
++...|++.+++.+++.+..++.
T Consensus 176 g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 176 GAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 24556666666666655554443
Done!