BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009415
(535 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9WUV0|ORC5_MOUSE Origin recognition complex subunit 5 OS=Mus musculus GN=Orc5 PE=2
SV=1
Length = 435
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 126/480 (26%), Positives = 220/480 (45%), Gaps = 67/480 (13%)
Query: 63 RRVQILELLRLLGTLNS-SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPR 121
R Q+ L L G + S P +F+YG ++GKT + + + L P + +C+ C++ R
Sbjct: 11 REAQVSTLQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHAFVNCVECFTSR 70
Query: 122 ILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKL 181
+L E ILN+ L H ++ G S+ CE +DFV ++ TS L
Sbjct: 71 LLLEQILNK-LSHLNSSDAGCSTEMTCETFNDFVQLFKQV--------------TSAEHL 115
Query: 182 KGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSN 241
K Q +Y++ D E +R D +++LP L L ++ V +IF+S + + N
Sbjct: 116 KDQT----VYIVLDKAEYLR--DMEANLLPGLLRLQELTDR-NVTVIFLSEIIWEKFRPN 168
Query: 242 TGYVAPIHVYFPECTEDDLRQIFMRN---QANQKLYSSFLDIVLRPFCRITKRVDELSTA 298
TG P +YFP+ + +L++I + + + Y+++++I+L F + + + EL
Sbjct: 169 TGCFEPFVLYFPDYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHL 228
Query: 299 FSLLFKRYCEPLSDLGVLPNGEM----KRRLFSHLQPHIAPSLNEIF-RVASQPCLECGV 353
L F +YCEP+ GE R+L+ +++PH+ ++ ++ R S E
Sbjct: 229 AVLNFPKYCEPVV------KGEAGERDTRKLWRNIEPHLKKAMQTVYLREISSSQWE--K 280
Query: 354 NQETRRKGGARKSVGSGDLDDIGFHMSTSAKYLLVSAFLASRNPATLDASLFDTTGVSDS 413
Q+ G K + + ++ ++ +K++L++A+LAS NPA D F
Sbjct: 281 LQKDNTDPGQLKGLSAYTHMELPYY----SKFILIAAYLASYNPARTDKRFF-------L 329
Query: 414 RKRKRKASEKSLEQKEAAEQELLMKGPGTFSLERLLAIFQCITSVGEEEEGNDGLRVDEG 473
+ + L++ E LL GP F L+RLLAI I +
Sbjct: 330 KHHGKIKKTNFLKKHEKTSNHLL--GPKPFPLDRLLAILYSIV---------------DS 372
Query: 474 SNALMSDILLQLTSLCNSNFIVNGGSCPLEGSTRYRSTLSEDLAMKVARSIKFPLSKYLY 533
A ++I Q+TSL + G +Y+ T+S D +AR + F + KYLY
Sbjct: 373 RVAPTANIFSQITSLVTLQLLTIVGHEDQLNGPKYKCTVSLDFIRAIARMVNFDIIKYLY 432
>sp|O43913|ORC5_HUMAN Origin recognition complex subunit 5 OS=Homo sapiens GN=ORC5 PE=1
SV=1
Length = 435
Score = 145 bits (366), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 123/483 (25%), Positives = 219/483 (45%), Gaps = 73/483 (15%)
Query: 63 RRVQILELLRLLGTLNS-SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPR 121
R Q+ L L G + S P +F+YG ++GKT + + + L P V+ +C+ C++ R
Sbjct: 11 RESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVFVNCVECFTLR 70
Query: 122 ILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKL 181
+L E ILN+ L H ++ +G S+ CE +DFV ++ T+ L
Sbjct: 71 LLLEQILNK-LNHLSSSEDGCSTEITCETFNDFVRLFKQV--------------TTAENL 115
Query: 182 KGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSN 241
K Q +Y++ D E +R D +++LP L ++ V ++F+S + + N
Sbjct: 116 KDQT----VYIVLDKAEYLR--DMEANLLPGFLRLQELADR-NVTVLFLSEIVWEKFRPN 168
Query: 242 TGYVAPIHVYFPECTEDDLRQIFMRN---QANQKLYSSFLDIVLRPFCRITKRVDELSTA 298
TG P +YFP+ + +L++I + + + Y+++++I+L F + + + EL
Sbjct: 169 TGCFEPFVLYFPDYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHL 228
Query: 299 FSLLFKRYCEPLSDLGVLPNGEMK----RRLFSHLQPHIAPSLNEIFRVASQPCLECGVN 354
L F +YCEP+ GE R+L+ +++PH+ ++ ++ E +
Sbjct: 229 AVLNFPKYCEPVV------KGEASERDTRKLWRNIEPHLKKAMQTVY------LREISSS 276
Query: 355 QETRRKGGARKSVGSGDLDDIGFHMSTS----AKYLLVSAFLASRNPATLDASLFDTTGV 410
Q + + + G L + H +K++L++A+LAS NPA D F
Sbjct: 277 QWEKLQ---KDDTDPGQLKGLSAHTHVELPYYSKFILIAAYLASYNPARTDKRFF----- 328
Query: 411 SDSRKRKRKASEKSLEQKEAAEQELLMKGPGTFSLERLLAIFQCITSVGEEEEGNDGLRV 470
+ + L++ E LL GP F L+RLLAI I
Sbjct: 329 --LKHHGKIKKTNFLKKHEKTSNHLL--GPKPFPLDRLLAILYSIV-------------- 370
Query: 471 DEGSNALMSDILLQLTSLCNSNFIVNGGSCPLEGSTRYRSTLSEDLAMKVARSIKFPLSK 530
+ A ++I Q+TSL + G +Y+ T+S D +AR++ F + K
Sbjct: 371 -DSRVAPTANIFSQITSLVTLQLLTLVGHDDQLDGPKYKCTVSLDFIRAIARTVNFDIIK 429
Query: 531 YLY 533
YLY
Sbjct: 430 YLY 432
>sp|Q24169|ORC5_DROME Origin recognition complex subunit 5 OS=Drosophila melanogaster
GN=Orc5 PE=2 SV=1
Length = 460
Score = 102 bits (253), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 116/508 (22%), Positives = 225/508 (44%), Gaps = 98/508 (19%)
Query: 60 FPGRRVQILELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHL-SRPFVYTSCLS- 116
FP R I L L+G + + P ++++G + TGKT++ + R V T+ L+
Sbjct: 12 FPCREAAIETLGELIGDSSETYPSAIYLFGHSGTGKTALTRAFLKECGKRQNVRTAHLNA 71
Query: 117 --CYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAE 174
CY+ +I+ E +L+ L + +A + + DFV E
Sbjct: 72 IECYTTKIMLEILLDSLAPDQGDAL-------KVDNMLDFV---------------EQLR 109
Query: 175 KTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS 234
+ + ++++ Q G +I + DN E +R+ D +++LP L L ++ + + +I +S
Sbjct: 110 RQAATRVEDQ--GFLIAV--DNAERLRDMD--ANVLPVLLRLQELTNL-NLCVILLSQLP 162
Query: 235 PDTYHSNTGYVAPIHVYFPECTEDDLRQIF------MRNQ------------------AN 270
+ +++ TG + ++ + + + ++I +RNQ
Sbjct: 163 FEKFYNKTGLSEIVCLHLAQYNKAETQRILGSDFQQVRNQLLEQFAQDKKRLEICQEAVT 222
Query: 271 QKLYSSFLDIVLRPFCRITKRVDELSTAFSLLFKRYCEPLSDLGVLPNGEMKRRLFSHLQ 330
+ Y+++L++ L F + + V EL Y EP+ D G + ++ R L+ H+
Sbjct: 223 EDFYNNYLNLFLSVFYKACRDVPELQLTARKCLSTYLEPVLD-GTVDATDISR-LWRHIA 280
Query: 331 PHIAPSLNEIFRVASQPCLEC----GVNQETRRKGGARKSVGSGDLDDIGFHMSTSAKYL 386
+ +L +I+ +P E + ++ RK + AK+L
Sbjct: 281 GPLRSALTQIYMRIEKPAEEVEDFTAIEDQSVRKLAQ------------SLELPYYAKFL 328
Query: 387 LVSAFLASRNPATLDASLFDTTGVSDSRKRKRKASEKSLEQKEAAEQELLMKGPGTFSLE 446
L++AFLAS N A D LF RKR + + ++ + E+ GP +FS++
Sbjct: 329 LIAAFLASHNAAKQDKRLF-VKHHGKQRKRMQTVNARA----KTTEKMSTTLGPKSFSID 383
Query: 447 RLLAIFQCITSVGEEEEGNDGLRVDEGSNALMSDILLQLTSLCNSNFI--VNGGSCPLEG 504
RLLAIF I EE+ G L ++L Q+++L + N + V+G +EG
Sbjct: 384 RLLAIFYAIL---EEKVG------------LTCNLLSQISTLVHLNLLSFVSGEQNIMEG 428
Query: 505 STRYRSTLSEDLAMKVARSIKFPLSKYL 532
S R + T+ + +++ + + F + +YL
Sbjct: 429 SARLQCTIGLEFVLQIGKVVGFNVRQYL 456
>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=orc5 PE=1 SV=2
Length = 455
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 121/507 (23%), Positives = 211/507 (41%), Gaps = 89/507 (17%)
Query: 54 DDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113
D+L R QI +L LL + +P + +YG AST KT ++ F V+ +
Sbjct: 8 DELKKNVFCREDQIKKLSCLLFNKDCRVPSIVLYGVASTAKTFLLRTAFDLSKEENVWIN 67
Query: 114 CLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENA 173
C++ + IL ++ + K A K+ S F+ + +A+
Sbjct: 68 LQDCFTVAHFWYRILIKVGVDKDIAL------KKGINISGFIYLLEQAM----------- 110
Query: 174 EKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSIL-PFLFGLSDILKMPEVGMIFISS 232
K Y F + + ++ ++S+IL L L + +P + +IF+
Sbjct: 111 -------------SKRDYHTFLVLDQIDDFAEASTILFSQLAQLPIVANIPNLSIIFVLH 157
Query: 233 TSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFCRITKRV 292
+ P Y G ++ ++FP+ T+ ++ +I + N LD + R + +
Sbjct: 158 SHPAQY---LGTLSIAVIFFPQYTQAEILEICQKTPPN-------LDFLDRSGDSVFEDE 207
Query: 293 DELSTAFSLLFKRYCEPL-SDLGVLPNGE-------MKRRLFSHLQPHIAPSLN-----E 339
ELS ++ +YC L S GV + + R +QP + ++ +
Sbjct: 208 IELS-----VWMQYCSFLWSVFGVQCLNDYRSFRSVLDRYWPKFIQPIVEGDIHPADYAQ 262
Query: 340 IFRVASQPCLECGVNQETRRKGGARKSVGSGDLDDIGFHMSTSAKYLLVSAFLASRNPAT 399
+ ++A + T+R + LD ++S +KYLLVSAFLAS NP+
Sbjct: 263 LHKLAKNFLVSDAT--VTKRLHIINPTEIKNLLDSKSINLSLVSKYLLVSAFLASYNPSR 320
Query: 400 LDASLFDTTGVSDSRKRKRKASE------------KSLEQKEAAEQELLMKGPGTFSLER 447
LDA F + S R RKRK + + + A + L GP F +ER
Sbjct: 321 LDAQFFSFSKTSKRRGRKRKQIQDEGVLFSKIPRTAGSKGRSAVKISQLTLGPKPFEVER 380
Query: 448 LLAIFQCITSVGEEEEGNDGLRVDEGSNALMSDILLQLTSLCNSNFIVNGGSCPLEG--S 505
L+AI+ I+S E+ L +D+ +Q+ +L + I++ L S
Sbjct: 381 LIAIYYAISSPVEK--------------VLTADVFVQIATLASLKMILSASKGVLRSLDS 426
Query: 506 TRYRSTLSEDLAMKVARSIKFPLSKYL 532
RY +S + +K+A S+ FPL YL
Sbjct: 427 PRYIVNVSREYVLKIADSLSFPLDSYL 453
>sp|P50874|ORC5_YEAST Origin recognition complex subunit 5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ORC5 PE=1 SV=1
Length = 479
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 360 KGGARKSVGSGDLDDI----GFHMSTSAKYLLVSAFLASRNPATLDASLFDTTGVSDSRK 415
+ G +S + + DD+ + +S +KYLL+++++ S DAS+F SRK
Sbjct: 301 ENGQGESAITTNRDDLENSQTYDLSIISKYLLIASYICSYLEPRYDASIF-------SRK 353
Query: 416 RKRKASEKSLEQKEAAEQELLMKGPGTFSLERLLAIFQCITSV-GEEEEGNDGLRVDEGS 474
+ + +++ E P F++ERLLAIFQ I + G+ E G+ +E
Sbjct: 354 TRIIQGRAAYGRRKKKEVNPRYLQPSLFAIERLLAIFQAIFPIQGKAESGSLSALREESL 413
Query: 475 NALMSDILLQLTSLCNSNFI---VNGGSCPLEGSTRYRSTLSEDLAMKVARSIKFPLSKY 531
++ L+ L I +N L R++ + ++ +++ S+ F +S Y
Sbjct: 414 MKANIEVFQNLSELHTLKLIATTMNKNIDYLSPKVRWKVNVPWEIIKEISESVHFNISDY 473
Query: 532 L 532
Sbjct: 474 F 474
>sp|P28787|NTRC_PROHU Nitrogen regulation protein NR(I) OS=Proteus hauseri GN=ntrC PE=3
SV=1
Length = 473
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 52 SLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR---P 108
S+ D++ P + E+ R++G L+ S + + G + TGK + + RH R P
Sbjct: 137 SVSDMIGEAPAMQ----EVYRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRALAP 192
Query: 109 FVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAK--RCEKPSDFVIFVRE 160
F+ + + P+ L ES +L H+K AF G S + R E+ + +F+ E
Sbjct: 193 FIALNMAAI--PKDLIES---ELFGHEKGAFTGASQVRQGRFEQANGGSLFLDE 241
>sp|P03029|NTRC_KLEPN Nitrogen assimilation regulatory protein OS=Klebsiella pneumoniae
GN=ntrC PE=1 SV=1
Length = 469
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 69 ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR---PFVYTSCLSCYSPRILFE 125
++ R++G L+ S + + G + TGK + + RH R PF+ + + P+ L E
Sbjct: 149 DVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAI--PKDLIE 206
Query: 126 SILNQLLLHKKNAFNGYSSAK--RCEKPSDFVIFVRE 160
S +L H+K AF G ++ + R E+ +F+ E
Sbjct: 207 S---ELFGHEKGAFTGANTVRQGRFEQADGGTLFLDE 240
>sp|P0AFB8|NTRC_ECOLI Nitrogen regulation protein NR(I) OS=Escherichia coli (strain K12)
GN=glnG PE=3 SV=1
Length = 469
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 69 ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR---PFVYTSCLSCYSPRILFE 125
++ R++G L+ S + + G + TGK + + RH R PF+ + + P+ L E
Sbjct: 149 DVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAI--PKDLIE 206
Query: 126 SILNQLLLHKKNAFNGYSSAK--RCEKPSDFVIFVRE 160
S +L H+K AF G ++ + R E+ +F+ E
Sbjct: 207 S---ELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240
>sp|P0AFB9|NTRC_ECO57 Nitrogen regulation protein NR(I) OS=Escherichia coli O157:H7
GN=glnG PE=3 SV=1
Length = 469
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 69 ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR---PFVYTSCLSCYSPRILFE 125
++ R++G L+ S + + G + TGK + + RH R PF+ + + P+ L E
Sbjct: 149 DVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAI--PKDLIE 206
Query: 126 SILNQLLLHKKNAFNGYSSAK--RCEKPSDFVIFVRE 160
S +L H+K AF G ++ + R E+ +F+ E
Sbjct: 207 S---ELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240
>sp|Q54C22|ORC5_DICDI Origin recognition complex subunit 5 OS=Dictyostelium discoideum
GN=orcE PE=3 SV=1
Length = 571
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 83/208 (39%), Gaps = 29/208 (13%)
Query: 265 MRNQANQKLYSSFLDIVLRPFCRITKRVDELSTAFSLLFKRYCEPLSDLGVLPNGEMKRR 324
++ + N KLY+ +++V+R F T+ + ++ LF Y EP+ + G +
Sbjct: 311 LKEEDNIKLYNKLVELVVRVFHTTTRDIIDIIFVCHNLFPNYIEPIYN-GTCGVEDSDSI 369
Query: 325 LFSHLQPHIAPSLNEIFRVASQPCLECGVNQETRR-------------------KGGARK 365
L+ +++ I SL I + QET + K R+
Sbjct: 370 LYQNIESKIVKSLRNITEKDEIVLEDQKRQQETYQIYPPQQVPQQQKQQEKEKEKEKGRQ 429
Query: 366 SVGSGDLDDIGFHMSTSAKYLLVSAFLASRNPATLDASLFDTTGVSDSRKRKRKASEKSL 425
D +I +HM K +L+S FLAS D L+ V KR+ ++EK+
Sbjct: 430 LASYSDAKNIPYHM----KIVLISCFLASSFSRNKDKLLYTKEAV----KRQSLSNEKTT 481
Query: 426 EQKEAAEQELLMKGPGTFSLERLLAIFQ 453
K Q G F E+ A+FQ
Sbjct: 482 GSKWFHFQRAREIGYKLFPSEK-KALFQ 508
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQL 131
+FV+G STGK + I V SR + C YS LF S+L+ L
Sbjct: 26 IFVWGPKSTGKYTTIKHVLESNSRIYCEADCNEHYSTASLFRSLLSTL 73
>sp|P41789|NTRC_SALTY Nitrogen regulation protein NR(I) OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=glnG PE=1 SV=2
Length = 469
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 69 ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR---PFVYTSCLSCYSPRILFE 125
++ R++G L+ S + + G + TGK + + RH R PF+ + + P+ L E
Sbjct: 149 DVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAI--PKDLIE 206
Query: 126 SILNQLLLHKKNAFNGYSSAK--RCEKPSDFVIFVRE 160
S +L H+K AF G ++ + R E+ +F+ E
Sbjct: 207 S---ELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240
>sp|Q4JAS8|CDC61_SULAC Cell division control protein 6 homolog 1 OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=cdc6-1 PE=3 SV=1
Length = 397
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 60 FPGRRVQILELLRLLGTLNSSMPP--LFVYGSASTGKTSIIIQVFRHLSRP------FVY 111
P R QI +L+ +L + S P +F+YG TGKT++ V +L R F+Y
Sbjct: 33 LPHREDQIRKLVEILAPITRSEKPSNVFIYGLTGTGKTAVTRFVLSNLQRKFPSKFTFIY 92
Query: 112 TSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAK 146
+ +P + +L L + + F G S+A+
Sbjct: 93 INTRQNDTPYRILADVLEALGI--RVPFTGLSTAE 125
>sp|Q7MM78|LUXO_VIBVY Regulatory protein LuxO OS=Vibrio vulnificus (strain YJ016) GN=luxO
PE=3 SV=2
Length = 453
Score = 37.4 bits (85), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGK---TSIIIQVFRHLSRPFVYTSCLS 116
F G ++ ++ R + + SS +F+ G + TGK I R +PF+ +C +
Sbjct: 133 FIGSSQKMQQVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAA 192
Query: 117 CYSPRILFESILNQLLLHKKNAFNGYSSAKR 147
P+ L ES +L H K AF G ++ ++
Sbjct: 193 I--PKDLIES---ELFGHVKGAFTGAATDRQ 218
>sp|Q8CWJ5|LUXO_VIBVU Regulatory protein LuxO OS=Vibrio vulnificus (strain CMCP6) GN=luxO
PE=3 SV=2
Length = 453
Score = 37.4 bits (85), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGK---TSIIIQVFRHLSRPFVYTSCLS 116
F G ++ ++ R + + SS +F+ G + TGK I R +PF+ +C +
Sbjct: 133 FIGSSQKMQQVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAA 192
Query: 117 CYSPRILFESILNQLLLHKKNAFNGYSSAKR 147
P+ L ES +L H K AF G ++ ++
Sbjct: 193 I--PKDLIES---ELFGHVKGAFTGAATDRQ 218
>sp|Q975X3|CDC61_SULTO Cell division control protein 6 homolog 1 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=cdc6-1 PE=3 SV=1
Length = 398
Score = 37.4 bits (85), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 60 FPGRRVQILELLRLLGTLNSSMPP--LFVYGSASTGKTSIIIQVFRHLSRP------FVY 111
P R QI L+ +L L P +F+YG TGKT++ V + L +VY
Sbjct: 33 LPHREEQIKRLVEILSPLMRGEKPNNIFIYGLTGTGKTAVTKFVVKKLHEKISNSFIYVY 92
Query: 112 TSCLSCYSP-RILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSL 169
+ +P RIL + + N L K F G S+A+ + V+ ++ L+ V+D +
Sbjct: 93 INTRQTDTPYRILADLLEN---LGSKVPFTGISTAELYRRFIKKVLELKPILVIVLDEI 148
>sp|P41411|CDC18_SCHPO Cell division control protein 18 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cdc18 PE=1 SV=1
Length = 577
Score = 35.8 bits (81), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 19/144 (13%)
Query: 84 LFVYGSASTGKTSIIIQVFRHLSRPF-----VYTSCLSCYSPRILFESILNQLLLHKKNA 138
L+V G+ TGKT ++ V H+ + Y +C++ P+ +FE I ++++ +
Sbjct: 195 LYVSGAPGTGKTVLLHNVLDHVVSDYPKVNVCYINCMTINEPKAIFEKIHSKIVKEEILE 254
Query: 139 FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFE 198
+ +CE S F E VI L E + + +++Y +F
Sbjct: 255 NEDHHINFQCELESHFTQSANELYNPVIIVLDEMDHLIAREQ-------QVLYTLF---- 303
Query: 199 LVREWDKSSSILPFLFGLSDILKM 222
EW + L G+++ L M
Sbjct: 304 ---EWPSRPTSRLILVGIANALDM 324
>sp|Q00934|PILR_PSEAE Type 4 fimbriae expression regulatory protein PilR OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=pilR PE=3 SV=2
Length = 445
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 74 LGTLNSSMPPLFVYGSASTGK---TSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQ 130
+G L S P+++ G + +GK +I + + RPFV +C + P L ES +
Sbjct: 149 IGKLARSQAPVYISGESGSGKELVARLIHEQGPRIERPFVPVNCGAI--PSELMES---E 203
Query: 131 LLLHKKNAFNG 141
HKK +F G
Sbjct: 204 FFGHKKGSFTG 214
>sp|P0CR73|SPT6_CRYNB Transcription elongation factor SPT6 OS=Cryptococcus neoformans
var. neoformans serotype D (strain B-3501A) GN=SPT6 PE=3
SV=1
Length = 1506
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 409 GVSDSRKRKRKASEKSLEQKEAAEQELLMKGPGTFSLERLLAIFQCITSVGEEEEGNDGL 468
G ++ ++R+RK +EK L+++E A + G S + + A+F EG DG+
Sbjct: 165 GETEEQRRERKRAEK-LKRREQARSRPELTGVDRSSWDEIFAVFGDGQDYDWALEGEDGM 223
Query: 469 RVDEGSNALMSDILLQ 484
+DE A D+ L+
Sbjct: 224 DLDEEEEAAKKDLRLE 239
>sp|P0CR72|SPT6_CRYNJ Transcription elongation factor SPT6 OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SPT6 PE=3 SV=1
Length = 1506
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 409 GVSDSRKRKRKASEKSLEQKEAAEQELLMKGPGTFSLERLLAIFQCITSVGEEEEGNDGL 468
G ++ ++R+RK +EK L+++E A + G S + + A+F EG DG+
Sbjct: 165 GETEEQRRERKRAEK-LKRREQARSRPELTGVDRSSWDEIFAVFGDGQDYDWALEGEDGM 223
Query: 469 RVDEGSNALMSDILLQ 484
+DE A D+ L+
Sbjct: 224 DLDEEEEAAKKDLRLE 239
>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana
GN=WRKY19 PE=2 SV=1
Length = 1895
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 25/143 (17%)
Query: 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPR 121
G +Q+ E+L LL + + + ++G+ GKT+I ++FR +S Y +C+
Sbjct: 818 GMDMQVEEILSLLCIESLDVRSIGIWGTVGIGKTTIAEEIFRKIS--VQYETCV------ 869
Query: 122 ILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKL 181
+L LHK+ G+ + + +F+ V E +VI TS L
Sbjct: 870 -----VLKD--LHKEVEVKGHDAVRE-----NFLSEVLEVEPHVI-----RISDIKTSFL 912
Query: 182 KGQVNGKMIYLIFDNFELVREWD 204
+ ++ K I +I D+ R+ D
Sbjct: 913 RSRLQRKRILVILDDVNDYRDVD 935
>sp|Q5HJZ9|DNAA_STAEQ Chromosomal replication initiator protein DnaA OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=dnaA PE=3
SV=1
Length = 451
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 24 NNNGIELGKPNDSYIPTLGDLVFGQEPISLDDLLSRF---PGRRVQILELLRLLGTLNSS 80
N N E+ +P + ++ D +G+E ++ + F PG R L + +
Sbjct: 88 NVNTQEVQEPQVQH-SSIDDKTWGKEQFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEA 146
Query: 81 MPPLFVYGSASTGKTSIIIQVFRHL--SRP---FVYTSC 114
PLF+YG GKT ++ + H+ ++P +YTS
Sbjct: 147 YNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAKVIYTSS 185
>sp|Q8CQK7|DNAA_STAES Chromosomal replication initiator protein DnaA OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=dnaA PE=3 SV=1
Length = 451
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 24 NNNGIELGKPNDSYIPTLGDLVFGQEPISLDDLLSRF---PGRRVQILELLRLLGTLNSS 80
N N E+ +P + ++ D +G+E ++ + F PG R L + +
Sbjct: 88 NVNTQEVQEPQVQH-SSIDDKTWGKEQFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEA 146
Query: 81 MPPLFVYGSASTGKTSIIIQVFRHL--SRP---FVYTSC 114
PLF+YG GKT ++ + H+ ++P +YTS
Sbjct: 147 YNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAKVIYTSS 185
>sp|P81415|RADB_PYRFU DNA repair and recombination protein RadB OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=radB
PE=1 SV=1
Length = 225
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 73/182 (40%), Gaps = 34/182 (18%)
Query: 73 LLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLL 132
LLG + L VYG +TGKT+ +QV Y +SP L + +
Sbjct: 17 LLGGGVAKGVILQVYGPFATGKTTFAMQVGLLNEGKVAYVDTEGGFSPERLAQ------M 70
Query: 133 LHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYL 192
+N K EK FVIF + + N ++ ++LK VN K +
Sbjct: 71 AESRN----LDVEKALEK---FVIF---------EPMDLNEQRQVIARLKNIVNEKFSLV 114
Query: 193 IFDNF------ELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVA 246
+ D+F E RE+ + S L L I + V +I ++ Y SN+G +
Sbjct: 115 VVDSFTAHYRAEGSREYGELSKQLQV---LQWIARRKNVAVIVVNQVY---YDSNSGILK 168
Query: 247 PI 248
PI
Sbjct: 169 PI 170
>sp|Q87MX7|LUXO_VIBPA Regulatory protein LuxO OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=luxO PE=3 SV=1
Length = 453
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGK---TSIIIQVFRHLSRPFVYTSCLS 116
F G + ++ R + + SS +F+ G + TGK I + +PF+ +C +
Sbjct: 133 FIGSSQTMQQVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAA 192
Query: 117 CYSPRILFESILNQLLLHKKNAFNGYSSAKR 147
P+ L ES +L H K AF G ++ ++
Sbjct: 193 I--PKDLIES---ELFGHVKGAFTGAANDRQ 218
>sp|A7MVC2|LUXO_VIBHB Luminescence regulatory protein LuxO OS=Vibrio harveyi (strain ATCC
BAA-1116 / BB120) GN=luxO PE=1 SV=2
Length = 453
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGK---TSIIIQVFRHLSRPFVYTSCLS 116
F G + ++ R + + SS +F+ G + TGK I + +PF+ +C +
Sbjct: 133 FIGSSQTMQQVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAA 192
Query: 117 CYSPRILFESILNQLLLHKKNAFNGYSSAKR 147
P+ L ES +L H K AF G ++ ++
Sbjct: 193 I--PKDLIES---ELFGHVKGAFTGAANDRQ 218
>sp|P0C5S5|LUXO_VIBHA Luminescence regulatory protein LuxO OS=Vibrio harveyi GN=luxO PE=3
SV=1
Length = 453
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGK---TSIIIQVFRHLSRPFVYTSCLS 116
F G + ++ R + + SS +F+ G + TGK I + +PF+ +C +
Sbjct: 133 FIGSSQTMQQVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAA 192
Query: 117 CYSPRILFESILNQLLLHKKNAFNGYSSAKR 147
P+ L ES +L H K AF G ++ ++
Sbjct: 193 I--PKDLIES---ELFGHVKGAFTGAANDRQ 218
>sp|Q980N4|CDC61_SULSO Cell division control protein 6 homolog 1 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=cdc6-1 PE=1 SV=1
Length = 397
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 60 FPGRRVQILELLRLLGTLNSSMPP--LFVYGSASTGKTSIIIQVFRHLSRPF------VY 111
P R QI ++ +L L P +F+YG TGKT+++ V L + F VY
Sbjct: 33 LPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVY 92
Query: 112 TSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAK 146
+ +P + +L L + K F G S A+
Sbjct: 93 INTRQIDTPYRVLADLLESLDV--KVPFTGLSIAE 125
>sp|Q0VA77|ENPP4_XENTR Ectonucleotide pyrophosphatase/phosphodiesterase family member 4
OS=Xenopus tropicalis GN=enpp4 PE=2 SV=1
Length = 452
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 220 LKMPEVGMIFISSTSPDTYHSNTGYVAPIH-VYFPECTEDDLRQIFMRNQANQKLY 274
+++ EV +FI+ T P+ Y TG A H + ++D RQ+F N +N K +
Sbjct: 59 VQVEEVKNVFITKTFPNHYSLVTGLYAESHGIVANHMYDNDTRQVFHMNDSNSKWW 114
>sp|Q4A180|DNAA_STAS1 Chromosomal replication initiator protein DnaA OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=dnaA PE=3 SV=1
Length = 455
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 32 KPNDSYIPTLGDLVFGQEPISLDDLLSRF---PGRRVQILELLRLLGTLNSSMPPLFVYG 88
+P Y P + + V G E + + F PG R L + + PLF+YG
Sbjct: 99 QPAKKYTPGVDEAVIGGEQFNTHNTFETFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYG 158
Query: 89 SASTGKTSII 98
GKT ++
Sbjct: 159 GVGLGKTHLM 168
>sp|Q8A5U5|DNAA_BACTN Chromosomal replication initiator protein DnaA OS=Bacteroides
thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC
10582 / E50 / VPI-5482) GN=dnaA PE=3 SV=1
Length = 470
Score = 33.1 bits (74), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 26/157 (16%)
Query: 79 SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYS-PRILFESI-LNQLLLHKK 136
++ PLF+YG++ GKT HL+ + T Y+ R+L+ S L Q+
Sbjct: 164 TAFNPLFLYGASGVGKT--------HLANA-IGTKIKELYADKRVLYVSAHLFQV----- 209
Query: 137 NAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQV------NGKMI 190
Y+ + R +DF+ F + + +ID ++E A T T + NGK +
Sbjct: 210 ----QYTDSVRNNTTNDFINFYQTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQL 265
Query: 191 YLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGM 227
L D ++ + + + F +G+ L+ P V +
Sbjct: 266 ILTSDRAPVLLQGMEERLLTRFKWGMVAELEKPTVEL 302
>sp|O29995|CDC61_ARCFU Cell division control protein 6 homolog 1 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=cdc6-1 PE=3 SV=1
Length = 409
Score = 32.7 bits (73), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 59 RFPGRRVQILELLRLLGTLNSSMPP--LFVYGSASTGKTSIIIQVFRHL 105
+ P R QI +L LL + P +F+YG TGKT+ ++ V R L
Sbjct: 28 KLPHREEQINQLALLLSPMLRGGTPSNIFIYGKTGTGKTATVLFVARQL 76
>sp|Q8G7Q3|KUP2_BIFLO Probable potassium transport system protein kup 2
OS=Bifidobacterium longum (strain NCC 2705) GN=kup2 PE=3
SV=1
Length = 736
Score = 32.3 bits (72), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 183 GQVNGKMIYLIFDNFELV------REWDKSSSILP-----FLFGLSDILKMPEVGMIFIS 231
G+V G M+ + F +V +W ++ P FLF ++ + +G +F+S
Sbjct: 157 GKVFGSMVLVWFGFLAIVGVTNLSNDWSVFEALNPVYGIKFLFSPNNAAGIALMGTVFLS 216
Query: 232 STSPDTYHSNTGYVAPIHVYF 252
+T + +S+ G+V ++YF
Sbjct: 217 TTGAEALYSDMGHVGRGNIYF 237
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,814,814
Number of Sequences: 539616
Number of extensions: 7612361
Number of successful extensions: 23486
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 23444
Number of HSP's gapped (non-prelim): 63
length of query: 535
length of database: 191,569,459
effective HSP length: 122
effective length of query: 413
effective length of database: 125,736,307
effective search space: 51929094791
effective search space used: 51929094791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)